Citrus Sinensis ID: 038673
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 548 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FFG8 | 657 | Pentatricopeptide repeat- | yes | no | 0.998 | 0.832 | 0.602 | 0.0 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.979 | 0.727 | 0.407 | 1e-130 | |
| Q9FG16 | 622 | Pentatricopeptide repeat- | no | no | 0.979 | 0.863 | 0.400 | 1e-124 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.987 | 0.872 | 0.396 | 1e-123 | |
| Q9LUJ2 | 842 | Pentatricopeptide repeat- | no | no | 0.983 | 0.640 | 0.401 | 1e-122 | |
| P0C899 | 686 | Putative pentatricopeptid | no | no | 0.983 | 0.785 | 0.386 | 1e-120 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.979 | 0.831 | 0.405 | 1e-119 | |
| Q9SZT8 | 632 | Pentatricopeptide repeat- | no | no | 0.972 | 0.843 | 0.387 | 1e-116 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.927 | 0.710 | 0.374 | 1e-115 | |
| O23337 | 722 | Pentatricopeptide repeat- | no | no | 0.989 | 0.750 | 0.372 | 1e-114 |
| >sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/561 (60%), Positives = 423/561 (75%), Gaps = 14/561 (2%)
Query: 1 MDSFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFK 60
MD + R V E V+++NPFLWTA+IRGY ++G ++I++Y MR+E I PVSFT SAL K
Sbjct: 98 MDPYARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLK 157
Query: 61 ACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVV 120
AC + D++LG+Q HAQT L GF +YVGNTMI MYVKC + C+RKVFDEMPERDV+
Sbjct: 158 ACGTMKDLNLGRQFHAQTFRLRGFCF-VYVGNTMIDMYVKCESIDCARKVFDEMPERDVI 216
Query: 121 SWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAG 180
SWTELI AYA G+ME A LF LP KD VAWTAMVTG+ QNAKP+EA+EYF+RM+ +G
Sbjct: 217 SWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSG 276
Query: 181 VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD 240
+ D VT+ G ISACAQLG KYA+ +IA+ SG+ P ++VV+GSALIDMYSKCG++++
Sbjct: 277 IRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEE 336
Query: 241 AYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMV-KTETKPNGVTFIGVLTACS 299
A +F+ M +NVF+YSSMILG A HGRA A+ LF MV +TE KPN VTF+G L ACS
Sbjct: 337 AVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACS 396
Query: 300 HVGL------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVW 347
H GL + +GV P+ DHY CMVDLLGR G L+EAL++++ M VEP+GGVW
Sbjct: 397 HSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVW 456
Query: 348 GALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407
GALLGAC+IH NPEIA+IAA HLFELEPD IGNYI+LSN+YASAG W V RVR+L+K
Sbjct: 457 GALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEK 516
Query: 408 GLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYD 467
GLKK P SW+ G +H+F G+L HP S +IQ L +L++RL GYQP+L SV YD
Sbjct: 517 GLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYD 576
Query: 468 VSDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIV 527
VSD K+ IL+ H+EKLALAF LLTT+ +T+ IMKNLR+C DCH FM AS+V G+ I+
Sbjct: 577 VSDNAKRLILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVII 636
Query: 528 VRDNMRFHHFQDGKCSCGNYW 548
+RDNMRFHHF+ G CSCG++W
Sbjct: 637 MRDNMRFHHFRSGDCSCGDFW 657
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 467 bits (1201), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/555 (40%), Positives = 347/555 (62%), Gaps = 18/555 (3%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD 67
VF +K K+ W ++I G++ +G ++ L+ M E + T+ + AC ++ +
Sbjct: 188 VFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRN 247
Query: 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIV 127
+ G+Q+ I +L + N M+ MY KCG + ++++FD M E+D V+WT ++
Sbjct: 248 LEFGRQV-CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLD 306
Query: 128 AYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQY-AGVETDYV 186
YA + D E+A + N +P KD VAW A+++ Y QN KP EA+ F +Q ++ + +
Sbjct: 307 GYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQI 366
Query: 187 TLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFV 246
TLV +SACAQ+G ++ W+ + G N V SALI MYSKCG ++ + +F
Sbjct: 367 TLVSTLSACAQVGALELGRWIHSYIKKHGIR--MNFHVTSALIHMYSKCGDLEKSREVFN 424
Query: 247 GMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL--- 303
+++R+VF +S+MI G AMHG + A+ +F M + KPNGVTF V ACSH GL
Sbjct: 425 SVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDE 484
Query: 304 ---------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGAC 354
YG+ P HYAC+VD+LGR+G LE+A+K +E MP+ P+ VWGALLGAC
Sbjct: 485 AESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGAC 544
Query: 355 QIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPG 414
+IH N +A++A L ELEP G +++LSNIYA G W++VS +R+ +++TGLKK PG
Sbjct: 545 KIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPG 604
Query: 415 YSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEE-K 473
S +E D G+IHEF +GD HP S ++ L +++++L+++GY+P + VL + +EE K
Sbjct: 605 CSSIEID-GMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMK 663
Query: 474 KRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMR 533
++ L HSEKLA+ +GL++T +R++KNLR+C DCH SQ+ REI+VRD R
Sbjct: 664 EQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYR 723
Query: 534 FHHFQDGKCSCGNYW 548
FHHF++G+CSC ++W
Sbjct: 724 FHHFRNGQCSCNDFW 738
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 447 bits (1149), Expect = e-124, Method: Compositional matrix adjust.
Identities = 222/554 (40%), Positives = 340/554 (61%), Gaps = 17/554 (3%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD 67
+F Q++ N F++ LIR + + Y M + I P + T L KA +E+
Sbjct: 73 IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMEC 132
Query: 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIV 127
V +G+Q H+Q + G F +D+YV N+++ MY CGF+ + ++F +M RDVVSWT ++
Sbjct: 133 VLVGEQTHSQIVRFG-FQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVA 191
Query: 128 AYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVT 187
Y G +E+A +F+E+P ++ W+ M+ GY +N +AI+ FE M+ GV +
Sbjct: 192 GYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETV 251
Query: 188 LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVG 247
+V VIS+CA LG +++ E S N+++G+AL+DM+ +CG I+ A +F G
Sbjct: 252 MVSVISSCAHLGALEFGERAYEYVVKSHMTV--NLILGTALVDMFWRCGDIEKAIHVFEG 309
Query: 248 MKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL---- 303
+ + + S+SS+I G A+HG AH A+ F M+ P VTF VL+ACSH GL
Sbjct: 310 LPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKG 369
Query: 304 --------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQ 355
K +G+ P +HY C+VD+LGRAG L EA + KM V+PN + GALLGAC+
Sbjct: 370 LEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACK 429
Query: 356 IHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGY 415
I++N E+A+ N L +++P+ G Y++LSNIYA AG WD + +R ++K +KK PG+
Sbjct: 430 IYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGW 489
Query: 416 SWLEGDRGVIHEFRAGD-LTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKK 474
S +E D G I++F GD HP +I++ ++L +++ GY+ N +DV +EEK+
Sbjct: 490 SLIEID-GKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKE 548
Query: 475 RILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRF 534
+ HSEKLA+A+G++ T PG T+RI+KNLR+CEDCH S+V GRE++VRD RF
Sbjct: 549 SSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRF 608
Query: 535 HHFQDGKCSCGNYW 548
HHF++G CSC +YW
Sbjct: 609 HHFRNGVCSCRDYW 622
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 442 bits (1138), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/558 (39%), Positives = 332/558 (59%), Gaps = 17/558 (3%)
Query: 4 FPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACT 63
+ ++VF+ + FLW +IRG+ + S+ LY M ++T +L KAC+
Sbjct: 67 YAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACS 126
Query: 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWT 123
+ QIHAQ LG + +D+Y N++I Y G + +FD +PE D VSW
Sbjct: 127 NLSAFEETTQIHAQITKLG-YENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWN 185
Query: 124 ELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET 183
+I Y G M+ A LF ++ K+ ++WT M++GYVQ +EA++ F MQ + VE
Sbjct: 186 SVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEP 245
Query: 184 DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYR 243
D V+L +SACAQLG ++ W+ + + V+G LIDMY+KCG +++A
Sbjct: 246 DNVSLANALSACAQLGALEQGKWIHSYLNKTRIRM--DSVLGCVLIDMYAKCGEMEEALE 303
Query: 244 IFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL 303
+F +K+++V +++++I G+A HG AI F +M K KPN +TF VLTACS+ GL
Sbjct: 304 VFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGL 363
Query: 304 ------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALL 351
+ Y + P+ +HY C+VDLLGRAG L+EA + +++MP++PN +WGALL
Sbjct: 364 VEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALL 423
Query: 352 GACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKK 411
AC+IH+N E+ + L ++P G Y+ +NI+A WD + RRL+K G+ K
Sbjct: 424 KACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAK 483
Query: 412 NPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYD-VSD 470
PG S + + G HEF AGD +HP +IQ + +L+ +GY P L +L D V D
Sbjct: 484 VPGCSTISLE-GTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDD 542
Query: 471 EEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRD 530
+E++ I+ HSEKLA+ +GL+ T PG +RIMKNLR+C+DCH S++ R+IV+RD
Sbjct: 543 DEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRD 602
Query: 531 NMRFHHFQDGKCSCGNYW 548
RFHHF+DGKCSCG+YW
Sbjct: 603 RTRFHHFRDGKCSCGDYW 620
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust.
Identities = 223/556 (40%), Positives = 345/556 (62%), Gaps = 17/556 (3%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
+ +F++ N L A+ Y+ QG ++++ ++ M G+ P ++ + +C+++
Sbjct: 291 KRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQL 350
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
++ G+ H +L GF S + N +I MY+KC + ++FD M + VV+W +
Sbjct: 351 RNILWGKSCHGY-VLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSI 409
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQ-YAGVETD 184
+ Y NG++++A F +P K+ V+W +++G VQ + EAIE F MQ GV D
Sbjct: 410 VAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNAD 469
Query: 185 YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRI 244
VT++ + SAC LG + A W+ E +G +V +G+ L+DM+S+CG + A I
Sbjct: 470 GVTMMSIASACGHLGALDLAKWIYYYIEKNGIQL--DVRLGTTLVDMFSRCGDPESAMSI 527
Query: 245 FVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL- 303
F + R+V ++++ I AM G A AI+LF DM++ KP+GV F+G LTACSH GL
Sbjct: 528 FNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLV 587
Query: 304 -----------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLG 352
K +GVSP HY CMVDLLGRAG LEEA++++E MP+EPN +W +LL
Sbjct: 588 QQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLA 647
Query: 353 ACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKN 412
AC++ N E+A AA + L P++ G+Y++LSN+YASAG W+D+++VR +K GL+K
Sbjct: 648 ACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKP 707
Query: 413 PGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEE 472
PG S ++ RG HEF +GD +HP I+ L ++ R G+ P+L +VL DV ++E
Sbjct: 708 PGTSSIQ-IRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKE 766
Query: 473 KKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNM 532
K +L HSEKLA+A+GL++++ G T+RI+KNLR+C DCH F AS+V REI++RDN
Sbjct: 767 KIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNN 826
Query: 533 RFHHFQDGKCSCGNYW 548
RFH+ + GKCSCG++W
Sbjct: 827 RFHYIRQGKCSCGDFW 842
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 434 bits (1115), Expect = e-120, Method: Compositional matrix adjust.
Identities = 231/597 (38%), Positives = 341/597 (57%), Gaps = 58/597 (9%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
R VF+++ +N + +IR Y+ G + + ++ +M + P +T + KAC+
Sbjct: 94 RKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCS 153
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
+ +G++IH +G +S L+VGN ++ MY KCGFL +R V DEM RDVVSW L
Sbjct: 154 GTIVIGRKIHGSATKVG-LSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSL 212
Query: 126 IVAYANNG----------DMES------AGGLFNELPL---------------------K 148
+V YA N +MES AG + + LP K
Sbjct: 213 VVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKK 272
Query: 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVC 208
V+W M+ Y++NA P EA+E + RM+ G E D V++ V+ AC + +
Sbjct: 273 SLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIH 332
Query: 209 EIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGR 268
E P N+++ +ALIDMY+KCG ++ A +F MK R+V S+++MI + GR
Sbjct: 333 GYIERKKLIP--NLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGR 390
Query: 269 AHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL-----KC-------YGVSPSTDHYA 316
A+ LF + + P+ + F+ L ACSH GL C Y ++P +H A
Sbjct: 391 GCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLA 450
Query: 317 CMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPD 376
CMVDLLGRAG ++EA + ++ M +EPN VWGALLGAC++H + +I +AA+ LF+L P+
Sbjct: 451 CMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPE 510
Query: 377 KIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHP 436
+ G Y++LSNIYA AG W++V+ +R ++K GLKKNPG S +E +R +IH F GD +HP
Sbjct: 511 QSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNR-IIHTFLVGDRSHP 569
Query: 437 NSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKKRILMTHSEKLALAFGLLTTS-- 494
S EI + L L+ +++ GY P+ S L+DV +E+K+ L HSEKLA+ F L+ T
Sbjct: 570 QSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEE 629
Query: 495 ---PGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRFHHFQDGKCSCGNYW 548
T+RI KNLRIC DCH+ SQ+ REI++RD RFH F+ G CSCG+YW
Sbjct: 630 EEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 431 bits (1107), Expect = e-119, Method: Compositional matrix adjust.
Identities = 231/570 (40%), Positives = 342/570 (60%), Gaps = 33/570 (5%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISL---YCSMRREGIGPVSFTLSALFKACTE 64
+F Q+ +N F W +IRG+ K I++ Y M E + P FT ++ KAC +
Sbjct: 81 IFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAK 140
Query: 65 VLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVF-DEMPERD----- 118
+ G+QIH L GF D +V + ++ MYV CGF+ +R +F + E+D
Sbjct: 141 TGKIQEGKQIHGLA-LKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMT 199
Query: 119 --------VVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAI 170
+V W +I Y GD ++A LF+++ + V+W M++GY N ++A+
Sbjct: 200 DRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAV 259
Query: 171 EYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALID 230
E F M+ + +YVTLV V+ A ++LG ++ W+ AE SG I++V+ GSALID
Sbjct: 260 EVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGI-RIDDVL-GSALID 317
Query: 231 MYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVT 290
MYSKCG I+ A +F + + NV ++S+MI GFA+HG+A AI F M + +P+ V
Sbjct: 318 MYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVA 377
Query: 291 FIGVLTACSHVGL------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKM 338
+I +LTACSH GL G+ P +HY CMVDLLGR+G L+EA + + M
Sbjct: 378 YINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNM 437
Query: 339 PVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVS 398
P++P+ +W ALLGAC++ N E+ + AN L ++ P G Y+ LSN+YAS G W +VS
Sbjct: 438 PIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVS 497
Query: 399 RVRRLLKMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQ 458
+R +K ++K+PG S ++ D GV+HEF D +HP + EI L ++ D+L+ GY+
Sbjct: 498 EMRLRMKEKDIRKDPGCSLIDID-GVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYR 556
Query: 459 PNLRSVLYDVSDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGA 518
P VL ++ +E+K+ +L HSEK+A AFGL++TSPG +RI+KNLRICEDCH +
Sbjct: 557 PITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLI 616
Query: 519 SQVIGREIVVRDNMRFHHFQDGKCSCGNYW 548
S+V R+I VRD RFHHFQDG CSC +YW
Sbjct: 617 SKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/555 (38%), Positives = 335/555 (60%), Gaps = 22/555 (3%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD 67
+F Q + FL+TA I + G + LY + I P FT S+L K+C+
Sbjct: 86 LFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCS---- 141
Query: 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIV 127
G+ IH +L G D YV ++ +Y K G + ++KVFD MPER +VS T +I
Sbjct: 142 TKSGKLIHTH-VLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMIT 200
Query: 128 AYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGV-ETDYV 186
YA G++E+A LF+ + +D V+W M+ GY Q+ P +A+ F+++ G + D +
Sbjct: 201 CYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEI 260
Query: 187 TLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFV 246
T+V +SAC+Q+G ++ W+ + S NV V + LIDMYSKCGS+++A +F
Sbjct: 261 TVVAALSACSQIGALETGRWIHVFVKSSRIRL--NVKVCTGLIDMYSKCGSLEEAVLVFN 318
Query: 247 GMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVK-TETKPNGVTFIGVLTACSHVGL-- 303
++++ ++++MI G+AMHG + A++LF +M T +P +TFIG L AC+H GL
Sbjct: 319 DTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVN 378
Query: 304 ----------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGA 353
+ YG+ P +HY C+V LLGRAG L+ A + ++ M ++ + +W ++LG+
Sbjct: 379 EGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGS 438
Query: 354 CQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNP 413
C++H + + + A +L L G Y++LSNIYAS G ++ V++VR L+K G+ K P
Sbjct: 439 CKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEP 498
Query: 414 GYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEK 473
G S +E + V HEFRAGD H S EI L + +R+++ GY PN +VL D+ + EK
Sbjct: 499 GISTIEIENKV-HEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEK 557
Query: 474 KRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMR 533
++ L HSE+LA+A+GL++T PG+ ++I KNLR+C DCH S++ GR+IV+RD R
Sbjct: 558 EQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNR 617
Query: 534 FHHFQDGKCSCGNYW 548
FHHF DG CSCG++W
Sbjct: 618 FHHFTDGSCSCGDFW 632
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/555 (37%), Positives = 323/555 (58%), Gaps = 47/555 (8%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
R VFE + K+ + +I GY G +D++ + M + P SFTLS++ +E
Sbjct: 196 RRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEY 255
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
+DV G++IH ++ G SD+Y+G++++ MY K
Sbjct: 256 VDVIKGKEIHGY-VIRKGIDSDVYIGSSLVDMYAK------------------------- 289
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
+ +E + +F+ L +D ++W ++V GYVQN + EA+ F +M A V+
Sbjct: 290 ------SARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGA 343
Query: 186 VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIF 245
V VI ACA L + + GFG +N+ + SAL+DMYSKCG+I A +IF
Sbjct: 344 VAFSSVIPACAHLATLHLGKQLHGYVLRGGFG--SNIFIASALVDMYSKCGNIKAARKIF 401
Query: 246 VGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL-- 303
M + S++++I+G A+HG H A+ LF +M + KPN V F+ VLTACSHVGL
Sbjct: 402 DRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVD 461
Query: 304 ----------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGA 353
K YG++ +HYA + DLLGRAG LEEA + KM VEP G VW LL +
Sbjct: 462 EAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSS 521
Query: 354 CQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNP 413
C +H+N E+A+ A +F ++ + +G Y+++ N+YAS G W +++++R ++ GL+K P
Sbjct: 522 CSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKP 581
Query: 414 GYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEK 473
SW+E + H F +GD +HP+ +I + L ++++++ +GY + VL+DV +E K
Sbjct: 582 ACSWIEM-KNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHK 640
Query: 474 KRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMR 533
+ +L HSE+LA+AFG++ T PG T+R+ KN+RIC DCH+ + S++ REI+VRDN R
Sbjct: 641 RELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSR 700
Query: 534 FHHFQDGKCSCGNYW 548
FHHF G CSCG+YW
Sbjct: 701 FHHFNRGNCSCGDYW 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/564 (37%), Positives = 325/564 (57%), Gaps = 22/564 (3%)
Query: 3 SFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKAC 62
++ R VF+++ +++ W +I Y G + ++ L+ M+ + P L + AC
Sbjct: 163 NYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSAC 222
Query: 63 TEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSW 122
++ + I+ + ++ D ++ ++ MY G + +R+ F +M R++
Sbjct: 223 GRTGNMRYNRAIY-EFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVS 281
Query: 123 TELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVE 182
T ++ Y+ G ++ A +F++ KD V WT M++ YV++ P+EA+ FE M +G++
Sbjct: 282 TAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIK 341
Query: 183 TDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY 242
D V++ VISACA LG++ A WV +G + + + +ALI+MY+KCG +D
Sbjct: 342 PDVVSMFSVISACANLGILDKAKWVHSCIHVNGLE--SELSINNALINMYAKCGGLDATR 399
Query: 243 RIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302
+F M +RNV S+SSMI +MHG A A+ LF M + +PN VTF+GVL CSH G
Sbjct: 400 DVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSG 459
Query: 303 L------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGAL 350
L Y ++P +HY CMVDL GRA L EAL+++E MPV N +WG+L
Sbjct: 460 LVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSL 519
Query: 351 LGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLK 410
+ AC+IH E+ + AA + ELEPD G +++SNIYA W+DV +RR+++ +
Sbjct: 520 MSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVF 579
Query: 411 KNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSD 470
K G S ++ + G HEF GD H S EI L +++ +L+ GY P+ SVL DV +
Sbjct: 580 KEKGLSRIDQN-GKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEE 638
Query: 471 EEKKRILMTHSEKLALAFGLLTTSPG------ATVRIMKNLRICEDCHLFMCGASQVIGR 524
EEKK +++ HSEKLAL FGL+ +RI+KNLR+CEDCHLF S+V R
Sbjct: 639 EEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYER 698
Query: 525 EIVVRDNMRFHHFQDGKCSCGNYW 548
EI+VRD RFH +++G CSC +YW
Sbjct: 699 EIIVRDRTRFHCYKNGLCSCRDYW 722
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 548 | ||||||
| 225431281 | 647 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.846 | 0.725 | 0.0 | |
| 449457516 | 650 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.843 | 0.703 | 0.0 | |
| 449525261 | 650 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.843 | 0.701 | 0.0 | |
| 224133790 | 654 | predicted protein [Populus trichocarpa] | 1.0 | 0.837 | 0.678 | 0.0 | |
| 356510957 | 617 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.888 | 0.639 | 0.0 | |
| 357518907 | 616 | Pentatricopeptide repeat-containing prot | 0.989 | 0.879 | 0.616 | 0.0 | |
| 297794983 | 658 | pentatricopeptide repeat-containing prot | 0.998 | 0.831 | 0.611 | 0.0 | |
| 15241448 | 657 | pentatricopeptide repeat-containing prot | 0.998 | 0.832 | 0.602 | 0.0 | |
| 115469684 | 648 | Os06g0694300 [Oryza sativa Japonica Grou | 0.983 | 0.831 | 0.543 | 1e-172 | |
| 242094040 | 653 | hypothetical protein SORBIDRAFT_10g02837 | 0.983 | 0.825 | 0.538 | 1e-168 |
| >gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein At5g44230-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 868 bits (2243), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/560 (72%), Positives = 480/560 (85%), Gaps = 12/560 (2%)
Query: 1 MDSFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFK 60
MD +PRLVF+QV+Y NPFLWTALIRGY LQG +S+ LY SMRR+GIGPVSFT +AL K
Sbjct: 88 MDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLK 147
Query: 61 ACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVV 120
AC+ LDV+LG+Q+H QTIL+GGF SDLYVGNT+I MYVKCG LGC +VFDEM +RDV+
Sbjct: 148 ACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVI 207
Query: 121 SWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAG 180
SWT LIVAYA G+ME+A LF+ LP+KD VAWTAMVTGY QNA+PREA+E FERMQ AG
Sbjct: 208 SWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAG 267
Query: 181 VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD 240
V+TD VTLVGVISACAQLG KYANWV ++AE SGFGP +NVVVGSALIDMY+KCGS++D
Sbjct: 268 VKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVED 327
Query: 241 AYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSH 300
AY++F M++RNV+SYSSMI+GFAMHG A AA++LF +M+KTE KPN VTFIGVLTACSH
Sbjct: 328 AYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSH 387
Query: 301 VGL------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWG 348
G+ +C+GV+PS DHYACMVDLLGRAG LEEAL +V+ MP+ P+GGVWG
Sbjct: 388 AGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWG 447
Query: 349 ALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408
ALLGAC+IH NP++AQIAA+HLFELEP+ IGNYI+LSNIYASAG WDDVS+VR+L++ G
Sbjct: 448 ALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKG 507
Query: 409 LKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDV 468
LKKNPG SW+EG +G+IHEF AGD++HP S EI+QAL DLLDRL+ GYQPNL SV YD+
Sbjct: 508 LKKNPGCSWVEGKKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDI 567
Query: 469 SDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVV 528
SDEEKKR+LM+HSEKLALAFGLLTT+ G T+RI+KNLRICEDCH MCGASQ+ GREIVV
Sbjct: 568 SDEEKKRLLMSHSEKLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVV 627
Query: 529 RDNMRFHHFQDGKCSCGNYW 548
RDNMRFHHF+DG+CSCGN+W
Sbjct: 628 RDNMRFHHFRDGRCSCGNFW 647
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein At5g44230-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 851 bits (2199), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/560 (70%), Positives = 471/560 (84%), Gaps = 12/560 (2%)
Query: 1 MDSFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFK 60
M S+P LVF QV Y NPFLWTA+IRGY LQG L +S + Y MRR+G+GPVSFT SALFK
Sbjct: 91 MGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFK 150
Query: 61 ACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVV 120
AC L++ LG+Q+HAQTIL+GGF SDLYVGN+MI +YVKCGFLGC+RKVFDEM ERDVV
Sbjct: 151 ACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVV 210
Query: 121 SWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAG 180
SWTELIVAYA GDMESA GLF++LPLKD VAWTAMVTGY QN +P+EA+EYF++MQ G
Sbjct: 211 SWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVG 270
Query: 181 VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD 240
+ETD VTL GVISACAQLG +K+ANW+ +IAE SGFGP NVVVGSALIDMYSKCGS D+
Sbjct: 271 METDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDE 330
Query: 241 AYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSH 300
AY++F MK+RNVFSYSSMILG+AMHGRAH+A+QLF DM+KTE +PN VTFIG+L+ACSH
Sbjct: 331 AYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSH 390
Query: 301 VGL------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWG 348
GL K +GV+PS DHYACMVDLLGRAGCLEEAL +V+ MP+EPNGGVWG
Sbjct: 391 AGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWG 450
Query: 349 ALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408
ALLGAC+IH NP+IAQIAAN LF+LEP+ IGNYI+LSNIYASAG W++VS++R++++ G
Sbjct: 451 ALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKG 510
Query: 409 LKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDV 468
KKNPG SW EG G IH+F AGD THP S+EI+QAL L++RL++ GY+PNL S YD+
Sbjct: 511 FKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDL 570
Query: 469 SDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVV 528
+D+EK+RILM+HSEKLALA+GLL T G T++IMKN+RICEDCH MC AS++ GREI+V
Sbjct: 571 TDDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIV 630
Query: 529 RDNMRFHHFQDGKCSCGNYW 548
RDNMRFHHF +G CSCGN+W
Sbjct: 631 RDNMRFHHFHNGTCSCGNFW 650
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein At5g44230-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/560 (70%), Positives = 470/560 (83%), Gaps = 12/560 (2%)
Query: 1 MDSFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFK 60
M S+P LVF QV Y NPFLWTA+IRGY LQG L +S + Y MRR+G+GPVSFT SALFK
Sbjct: 91 MGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFK 150
Query: 61 ACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVV 120
AC L++ LG+Q+HAQTIL+GGF SDLYVGN+MI +YVKCGFLGC+RKVFDEM ERDVV
Sbjct: 151 ACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVV 210
Query: 121 SWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAG 180
SWTELIVAYA GDMESA GLF++LP KD VAWTAMVTGY QN +P+EA+EYF++MQ G
Sbjct: 211 SWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVG 270
Query: 181 VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD 240
+ETD VTL GVISACAQLG +K+ANW+ +IAE SGFGP NVVVGSALIDMYSKCGS D+
Sbjct: 271 METDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDE 330
Query: 241 AYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSH 300
AY++F MK+RNVFSYSSMILG+AMHGRAH+A+QLF DM+KTE +PN VTFIG+L+ACSH
Sbjct: 331 AYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSH 390
Query: 301 VGL------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWG 348
GL K +GV+PS DHYACMVDLLGRAGCLEEAL +V+ MP+EPNGGVWG
Sbjct: 391 AGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWG 450
Query: 349 ALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408
ALLGAC+IH NP+IAQIAAN LF+LEP+ IGNYI+LSNIYASAG W++VS++R++++ G
Sbjct: 451 ALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKG 510
Query: 409 LKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDV 468
KKNPG SW EG G IH+F AGD THP S+EI+QAL L++RL++ GY+PNL S YD+
Sbjct: 511 FKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDL 570
Query: 469 SDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVV 528
+D+EK+RILM+HSEKLALA+GLL T G T++IMKN+RICEDCH MC AS++ GREI+V
Sbjct: 571 TDDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIV 630
Query: 529 RDNMRFHHFQDGKCSCGNYW 548
RDNMRFHHF +G CSCGN+W
Sbjct: 631 RDNMRFHHFHNGTCSCGNFW 650
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa] gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/560 (67%), Positives = 463/560 (82%), Gaps = 12/560 (2%)
Query: 1 MDSFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFK 60
+D +P +F QV Y NPFL+ ALIRGY+++ LK+S Y MR+EG+ PVSFT +ALFK
Sbjct: 95 VDPYPLSIFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFK 154
Query: 61 ACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVV 120
AC +DV LG+QIH QTIL+GGF DL+VGN+MI MY+KCGFL C RKVFDEMP RDV+
Sbjct: 155 ACGAKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVI 214
Query: 121 SWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAG 180
SWTELI AY +G+MESAG LF+ LP+KD VAWT MV+G+ QNAKPREAI +FE+MQ G
Sbjct: 215 SWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFG 274
Query: 181 VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD 240
VETD +TL+GVISACAQLG KYA+W+ ++AE S FG ++VVVGSALIDMYSKCGS+ D
Sbjct: 275 VETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGD 334
Query: 241 AYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSH 300
AYR+F GMK+RNV+SYSSMILGFAMHGR H A++LF +MVKTE KPN VTFIGVLTACSH
Sbjct: 335 AYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSH 394
Query: 301 VGL------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWG 348
G+ KCYG+ PS DHY CMVDLLGRAG L+EA ++V+ MP+EP+GGVWG
Sbjct: 395 AGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWG 454
Query: 349 ALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408
ALLGAC+IH++P+IA IAANHLFELEP IGNYI+L+NIYAS G W+DVS VR+L++ G
Sbjct: 455 ALLGACRIHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRG 514
Query: 409 LKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDV 468
L+KNP +SW+E ++G++HEF +GD+THP S EI+QAL DLLDRL+A GYQP+L SV YDV
Sbjct: 515 LRKNPAFSWIESEKGMVHEFFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDV 574
Query: 469 SDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVV 528
+DE+K+RILMTHSEKLALAFGL++T PG+ +RI+KNLRICEDCH +CGASQ+ GREI+V
Sbjct: 575 NDEDKRRILMTHSEKLALAFGLISTIPGSKIRIVKNLRICEDCHSVICGASQITGREIIV 634
Query: 529 RDNMRFHHFQDGKCSCGNYW 548
RD MRFHHF DG CSCGN+W
Sbjct: 635 RDIMRFHHFHDGICSCGNFW 654
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein At5g44230-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/560 (63%), Positives = 441/560 (78%), Gaps = 12/560 (2%)
Query: 1 MDSFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFK 60
+ S+PRL+F Q+ NPF WTALIR Y L+G L ++S Y SMR+ + P+SFT SALF
Sbjct: 58 LHSYPRLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFS 117
Query: 61 ACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVV 120
AC V +LG Q+HAQT+LLGGF+SDLYV N +I MYVKCG L C+R VFDEMPERDV+
Sbjct: 118 ACAAVRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVI 177
Query: 121 SWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAG 180
SWT LIVAY GDM +A LF+ LP+KD V WTAMVTGY QNA P +A+E F R++ G
Sbjct: 178 SWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEG 237
Query: 181 VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD 240
VE D VTLVGVISACAQLG KYANW+ +IAE SGFG +NV+VGSALIDMYSKCG++++
Sbjct: 238 VEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEE 297
Query: 241 AYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSH 300
AY +F GM++RNVFSYSSMI+GFA+HGRA AAI+LF DM++T KPN VTF+GVLTACSH
Sbjct: 298 AYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSH 357
Query: 301 VGL------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWG 348
GL KCYGV+P+ + YACM DLL RAG LE+AL++VE MP+E +G VWG
Sbjct: 358 AGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWG 417
Query: 349 ALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408
ALLGA +H NP++A+IA+ LFELEPD IGNY++LSN YASAG WDDVS+VR+LL+
Sbjct: 418 ALLGASHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKN 477
Query: 409 LKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDV 468
LKKNPG+SW+E G+IH+F AGD++HP EI++ L DLL+RL+ GYQPNL S+ Y +
Sbjct: 478 LKKNPGWSWVEAKNGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGI 537
Query: 469 SDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVV 528
+D EK+ +LM HSEKLALAFGLL+T G+T++IMKNLRICEDCH+ MCGAS+V GR+IVV
Sbjct: 538 NDREKRLLLMAHSEKLALAFGLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVV 597
Query: 529 RDNMRFHHFQDGKCSCGNYW 548
RDN RFHHF +G CSC N+W
Sbjct: 598 RDNTRFHHFLNGACSCSNFW 617
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/558 (61%), Positives = 430/558 (77%), Gaps = 16/558 (2%)
Query: 3 SFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKAC 62
++P L+F QV NPFL++ALIR Y G SI LY SM + PVSFT SALF
Sbjct: 63 TYPHLLFSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALF--- 119
Query: 63 TEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSW 122
+ + + SLG Q+H L G F +DLYVGNT+I MYVK G L C+RKVFDEMP RDVV+W
Sbjct: 120 SLLKNPSLGSQLHLHAFLFG-FVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTW 178
Query: 123 TELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVE 182
TELIVAYA +GDM+SA LF LP+KD VAWT+MVTGY QNA P++A+++F +M+ AGV
Sbjct: 179 TELIVAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVV 238
Query: 183 TDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY 242
TD +TLVG ISACAQLGV YA+W+ EIAE S FG +NV VGSALIDMYSKCG++++AY
Sbjct: 239 TDEITLVGAISACAQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAY 298
Query: 243 RIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302
+F GMK+ NVFSYSSMI+GFA+HGRA +AI+LF +M++ KPN VTF+G+ TACSH G
Sbjct: 299 NVFKGMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAG 358
Query: 303 L------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGAL 350
+ +CYGVSP+ DHYACM DLLGRAG LE+AL++V+ MP+EPNGGVWGAL
Sbjct: 359 MVEQGQQLFGAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGAL 418
Query: 351 LGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLK 410
LGA IH NP++A+IA+ LFELEPD +GNY++LS YA A WDDVSRVR+L++ L+
Sbjct: 419 LGASHIHGNPDVAEIASRSLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLR 478
Query: 411 KNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSD 470
KNPG SW+E G+IHEF AGD+ HP EI++AL DLL RL+ GYQP L SV YD+ D
Sbjct: 479 KNPGCSWVEAKNGIIHEFFAGDVKHPEINEIKKALDDLLQRLKCTGYQPKLNSVPYDIDD 538
Query: 471 EEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRD 530
E K+ +L++HSEKLALA+GLL+T G+T++IMKNLRICEDCH+ MCGAS++ GR+I+VRD
Sbjct: 539 EGKRCLLVSHSEKLALAYGLLSTDAGSTIKIMKNLRICEDCHIVMCGASKLTGRKIIVRD 598
Query: 531 NMRFHHFQDGKCSCGNYW 548
NMRFHHF +G CSC N+W
Sbjct: 599 NMRFHHFLNGACSCNNFW 616
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/561 (61%), Positives = 429/561 (76%), Gaps = 14/561 (2%)
Query: 1 MDSFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFK 60
MD +PR V E V+++NPFLWTA+IRGY ++G ++I++Y MR+E I PVSFT SAL K
Sbjct: 99 MDPYPRRVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLK 158
Query: 61 ACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVV 120
AC + D++LG+Q HAQT L GF +YVGNTMI MYVKCG + C+RKVFDEMPERDV+
Sbjct: 159 ACGSMGDLNLGRQFHAQTFRLRGFCF-VYVGNTMIDMYVKCGSIVCARKVFDEMPERDVI 217
Query: 121 SWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAG 180
SWTELI AYA G+MESA LF LP KD VAWTAMVTG+ QNAKP+EA+EYF+RM+ +G
Sbjct: 218 SWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSG 277
Query: 181 VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD 240
+ D VT+ G ISACAQLG KYA+ +IA+ SG+ P ++VV+GSALIDMYSKCG++++
Sbjct: 278 IRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEE 337
Query: 241 AYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMV-KTETKPNGVTFIGVLTACS 299
A +FV M +NVFSYSSMILG A HGRA A+ LF MV +T KPN VTF+G LTACS
Sbjct: 338 AVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACS 397
Query: 300 HVGL------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVW 347
H GL + +GV P+ DHY CMVDLLGRAG L+EAL++++ M VEP+GGVW
Sbjct: 398 HSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVW 457
Query: 348 GALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407
GALLGAC+IH NP+IA+IAA HLFELEPD IGNYI+LSN+Y+SAG W V VR+L+K
Sbjct: 458 GALLGACRIHNNPDIAEIAAEHLFELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEK 517
Query: 408 GLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYD 467
GLKK P SW+ G +H+F G+L HP S +IQ L +L++RL A GYQP+L SV YD
Sbjct: 518 GLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSKKIQDKLEELVERLTALGYQPDLSSVPYD 577
Query: 468 VSDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIV 527
VSD K+ IL+ H+EKLALAF LLTT+ T++IMKNLR+C+DCH+FM AS+V GR I+
Sbjct: 578 VSDNAKRLILIQHTEKLALAFSLLTTNRDYTIKIMKNLRMCQDCHMFMRLASEVTGRVII 637
Query: 528 VRDNMRFHHFQDGKCSCGNYW 548
+RDNMRFHHF+ G CSCG++W
Sbjct: 638 MRDNMRFHHFRSGACSCGDFW 658
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana] gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/561 (60%), Positives = 423/561 (75%), Gaps = 14/561 (2%)
Query: 1 MDSFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFK 60
MD + R V E V+++NPFLWTA+IRGY ++G ++I++Y MR+E I PVSFT SAL K
Sbjct: 98 MDPYARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLK 157
Query: 61 ACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVV 120
AC + D++LG+Q HAQT L GF +YVGNTMI MYVKC + C+RKVFDEMPERDV+
Sbjct: 158 ACGTMKDLNLGRQFHAQTFRLRGFCF-VYVGNTMIDMYVKCESIDCARKVFDEMPERDVI 216
Query: 121 SWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAG 180
SWTELI AYA G+ME A LF LP KD VAWTAMVTG+ QNAKP+EA+EYF+RM+ +G
Sbjct: 217 SWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSG 276
Query: 181 VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD 240
+ D VT+ G ISACAQLG KYA+ +IA+ SG+ P ++VV+GSALIDMYSKCG++++
Sbjct: 277 IRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEE 336
Query: 241 AYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMV-KTETKPNGVTFIGVLTACS 299
A +F+ M +NVF+YSSMILG A HGRA A+ LF MV +TE KPN VTF+G L ACS
Sbjct: 337 AVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACS 396
Query: 300 HVGL------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVW 347
H GL + +GV P+ DHY CMVDLLGR G L+EAL++++ M VEP+GGVW
Sbjct: 397 HSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVW 456
Query: 348 GALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407
GALLGAC+IH NPEIA+IAA HLFELEPD IGNYI+LSN+YASAG W V RVR+L+K
Sbjct: 457 GALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEK 516
Query: 408 GLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYD 467
GLKK P SW+ G +H+F G+L HP S +IQ L +L++RL GYQP+L SV YD
Sbjct: 517 GLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYD 576
Query: 468 VSDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIV 527
VSD K+ IL+ H+EKLALAF LLTT+ +T+ IMKNLR+C DCH FM AS+V G+ I+
Sbjct: 577 VSDNAKRLILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVII 636
Query: 528 VRDNMRFHHFQDGKCSCGNYW 548
+RDNMRFHHF+ G CSCG++W
Sbjct: 637 MRDNMRFHHFRSGDCSCGDFW 657
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group] gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group] gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group] gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group] gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 303/557 (54%), Positives = 393/557 (70%), Gaps = 18/557 (3%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREG---IGPVSFTLSALFKACTE 64
VF V +PFL AL+R L ++ +RR + + F S L K+ T
Sbjct: 94 VFSAVSPPDPFLAAALLRFAFLTQPPLLPFRVFSHLRRAHGAELPFLPFAFSTLAKSATA 153
Query: 65 VLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTE 124
+ HA ++L+GGF +V N++IG YV CG +G +RKVFDEM E+DV+SWT
Sbjct: 154 SRSLPAAAAAHAVSVLVGGFDRHRFVENSLIGAYVACGDVGAARKVFDEMVEKDVISWTS 213
Query: 125 LIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD 184
++VAY +GDM SA +F P+KD VAWTAMVTGY QNA P +A+E F+RM G+ D
Sbjct: 214 IVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVID 273
Query: 185 YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRI 244
V+L G ISACAQLG ++ A WV EIAE +GFG NNVVVGS L+DMY+KCG ID+A ++
Sbjct: 274 EVSLTGAISACAQLGALRRAAWVQEIAERTGFG--NNVVVGSGLVDMYAKCGLIDEASKV 331
Query: 245 FVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMV-KTETKPNGVTFIGVLTACSHVGL 303
F GM+++NV++YSSMI G A HGRA AI LF +MV + +PN VTFIGVLTACSH G+
Sbjct: 332 FYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGM 391
Query: 304 ------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALL 351
YG+ PS DHYACMVDLLGRAG ++EAL +V M V P+GGVWGALL
Sbjct: 392 VGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALL 451
Query: 352 GACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKK 411
GAC+IH EIA++ A HLF+LEP+ IGNY++LSNI ASAG W++VS+VR L++ LKK
Sbjct: 452 GACRIHGKSEIAKVVAEHLFKLEPESIGNYVLLSNILASAGKWEEVSKVRILMRKQRLKK 511
Query: 412 NPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDE 471
+P S EG G++H+F AGD HP + EI++AL +L+ +L+ +GY P L S++YDV+DE
Sbjct: 512 DPAVSLFEGRDGLVHQFFAGDNAHPRTHEIKKALLELVAKLKLEGYVPILSSIVYDVNDE 571
Query: 472 EKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDN 531
EK+R+LM HSEKLAL+FGLLT G T+RI+KNLRIC+DCHLFM S+V EI+VRDN
Sbjct: 572 EKERLLMGHSEKLALSFGLLTLGSGCTIRIIKNLRICDDCHLFMQLVSRVESVEIIVRDN 631
Query: 532 MRFHHFQDGKCSCGNYW 548
MRFHHF++G+CSCG +W
Sbjct: 632 MRFHHFKNGECSCGGFW 648
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor] gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 300/557 (53%), Positives = 394/557 (70%), Gaps = 18/557 (3%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRR---EGIGPVSFTLSALFKACTE 64
VF + +PFL AL+R L ++ ++ +RR + + F S L K+
Sbjct: 99 VFSSLSPPDPFLAAALLRFAHLTQPPLETFRVFSGLRRAHGRDLPFLPFAFSPLAKSAAA 158
Query: 65 VLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTE 124
+ HA ++LLGGF +V N++IG YV CG +G +RKV DEM +DV+SWT
Sbjct: 159 ARSLPAAAGAHAVSLLLGGFDKHRFVENSLIGAYVACGDVGAARKVLDEMVVKDVISWTS 218
Query: 125 LIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD 184
++ AY+ + DM SA +F P+KD VAWTAMVTGY QNA P +A+E FE+M AG+ D
Sbjct: 219 IVAAYSRSRDMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAGAGMPID 278
Query: 185 YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRI 244
V+L G ISACAQLG ++ A W+ EIA+ SG G NVVVGS L+DMY+KCG ID+A R+
Sbjct: 279 EVSLTGAISACAQLGAVRRAVWIQEIADRSGLG--RNVVVGSGLVDMYAKCGLIDEACRV 336
Query: 245 FVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVK-TETKPNGVTFIGVLTACSHVGL 303
F GM+++NV++YSSMI+G A HGRA+ AI LF DMV+ + +PN VTFIGVLTACSH G+
Sbjct: 337 FEGMQEKNVYTYSSMIVGLASHGRANDAIALFNDMVRRADVEPNHVTFIGVLTACSHAGM 396
Query: 304 ------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALL 351
YG+ PS DHY CMVDLLGRAG + EAL +V+ M VEP+GGVWGALL
Sbjct: 397 VKEGRYYFAQMKDRYGILPSADHYTCMVDLLGRAGLVIEALDLVKSMTVEPHGGVWGALL 456
Query: 352 GACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKK 411
GAC+IH N ++A++AA HLF+LEP+ IGNY++LSN ASAG WD+VS+VR+L+++ GLKK
Sbjct: 457 GACRIHGNTKVAKVAAQHLFKLEPEGIGNYVLLSNTLASAGEWDEVSKVRKLMRIRGLKK 516
Query: 412 NPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDE 471
+P S EG G++H+F AGD THP EI++ L +L RL+ GY P L SV+Y+VSDE
Sbjct: 517 DPAVSSFEGRDGLVHQFFAGDNTHPWMHEIKKTLLELRARLKLAGYVPVLSSVVYNVSDE 576
Query: 472 EKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDN 531
EK+R+LM HSEKLAL+FGLLT +++RI+KNLRICEDCHLF+ S+V EI+VRDN
Sbjct: 577 EKERLLMGHSEKLALSFGLLTLESRSSIRIVKNLRICEDCHLFIRLVSKVEPIEIIVRDN 636
Query: 532 MRFHHFQDGKCSCGNYW 548
MRFHHF+DG+CSCG +W
Sbjct: 637 MRFHHFRDGECSCGGFW 653
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 548 | ||||||
| TAIR|locus:2167593 | 657 | AT5G44230 [Arabidopsis thalian | 0.998 | 0.832 | 0.602 | 9.7e-183 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.979 | 0.727 | 0.407 | 3.7e-119 | |
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.766 | 0.705 | 0.399 | 2e-117 | |
| TAIR|locus:2144143 | 622 | AT5G06540 [Arabidopsis thalian | 0.979 | 0.863 | 0.400 | 1e-114 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.987 | 0.872 | 0.396 | 5.9e-112 | |
| TAIR|locus:2078653 | 825 | AT3G02010 [Arabidopsis thalian | 0.768 | 0.510 | 0.400 | 3.9e-108 | |
| TAIR|locus:2126352 | 632 | AT4G37380 [Arabidopsis thalian | 0.970 | 0.841 | 0.392 | 2.7e-107 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.978 | 0.681 | 0.386 | 3.5e-107 | |
| TAIR|locus:2130389 | 684 | LOI1 "lovastatin insensitive 1 | 0.784 | 0.628 | 0.402 | 2.2e-105 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.768 | 0.423 | 0.408 | 5.8e-105 |
| TAIR|locus:2167593 AT5G44230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1773 (629.2 bits), Expect = 9.7e-183, P = 9.7e-183
Identities = 338/561 (60%), Positives = 423/561 (75%)
Query: 1 MDSFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFK 60
MD + R V E V+++NPFLWTA+IRGY ++G ++I++Y MR+E I PVSFT SAL K
Sbjct: 98 MDPYARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLK 157
Query: 61 ACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVV 120
AC + D++LG+Q HAQT L GF +YVGNTMI MYVKC + C+RKVFDEMPERDV+
Sbjct: 158 ACGTMKDLNLGRQFHAQTFRLRGFCF-VYVGNTMIDMYVKCESIDCARKVFDEMPERDVI 216
Query: 121 SWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAG 180
SWTELI AYA G+ME A LF LP KD VAWTAMVTG+ QNAKP+EA+EYF+RM+ +G
Sbjct: 217 SWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSG 276
Query: 181 VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD 240
+ D VT+ G ISACAQLG KYA+ +IA+ SG+ P ++VV+GSALIDMYSKCG++++
Sbjct: 277 IRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEE 336
Query: 241 AYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMV-KTETKPNGVTFIGVLTACS 299
A +F+ M +NVF+YSSMILG A HGRA A+ LF MV +TE KPN VTF+G L ACS
Sbjct: 337 AVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACS 396
Query: 300 HVGL------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVW 347
H GL + +GV P+ DHY CMVDLLGR G L+EAL++++ M VEP+GGVW
Sbjct: 397 HSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVW 456
Query: 348 GALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407
GALLGAC+IH NPEIA+IAA HLFELEPD IGNYI+LSN+YASAG W V RVR+L+K
Sbjct: 457 GALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEK 516
Query: 408 GLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYD 467
GLKK P SW+ G +H+F G+L HP S +IQ L +L++RL GYQP+L SV YD
Sbjct: 517 GLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYD 576
Query: 468 VSDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIV 527
VSD K+ IL+ H+EKLALAF LLTT+ +T+ IMKNLR+C DCH FM AS+V G+ I+
Sbjct: 577 VSDNAKRLILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVII 636
Query: 528 VRDNMRFHHFQDGKCSCGNYW 548
+RDNMRFHHF+ G CSCG++W
Sbjct: 637 MRDNMRFHHFRSGDCSCGDFW 657
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1173 (418.0 bits), Expect = 3.7e-119, P = 3.7e-119
Identities = 226/555 (40%), Positives = 347/555 (62%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD 67
VF +K K+ W ++I G++ +G ++ L+ M E + T+ + AC ++ +
Sbjct: 188 VFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRN 247
Query: 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIV 127
+ G+Q+ I +L + N M+ MY KCG + ++++FD M E+D V+WT ++
Sbjct: 248 LEFGRQV-CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLD 306
Query: 128 AYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYA-GVETDYV 186
YA + D E+A + N +P KD VAW A+++ Y QN KP EA+ F +Q ++ + +
Sbjct: 307 GYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQI 366
Query: 187 TLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFV 246
TLV +SACAQ+G ++ W+ + G N V SALI MYSKCG ++ + +F
Sbjct: 367 TLVSTLSACAQVGALELGRWIHSYIKKHGIRM--NFHVTSALIHMYSKCGDLEKSREVFN 424
Query: 247 GMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL--- 303
+++R+VF +S+MI G AMHG + A+ +F M + KPNGVTF V ACSH GL
Sbjct: 425 SVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDE 484
Query: 304 ---------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGAC 354
YG+ P HYAC+VD+LGR+G LE+A+K +E MP+ P+ VWGALLGAC
Sbjct: 485 AESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGAC 544
Query: 355 QIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPG 414
+IH N +A++A L ELEP G +++LSNIYA G W++VS +R+ +++TGLKK PG
Sbjct: 545 KIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPG 604
Query: 415 YSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEE-K 473
S +E D G+IHEF +GD HP S ++ L +++++L+++GY+P + VL + +EE K
Sbjct: 605 CSSIEID-GMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMK 663
Query: 474 KRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMR 533
++ L HSEKLA+ +GL++T +R++KNLR+C DCH SQ+ REI+VRD R
Sbjct: 664 EQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYR 723
Query: 534 FHHFQDGKCSCGNYW 548
FHHF++G+CSC ++W
Sbjct: 724 FHHFRNGQCSCNDFW 738
|
|
| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 907 (324.3 bits), Expect = 2.0e-117, Sum P(2) = 2.0e-117
Identities = 175/438 (39%), Positives = 278/438 (63%)
Query: 125 LIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD 184
L+ YAN GD+ SA +F+++P KD VAW +++ G+ +N KP EA+ + M G++ D
Sbjct: 162 LLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPD 221
Query: 185 YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRI 244
T+V ++SACA++G + V G N+ + L+D+Y++CG +++A +
Sbjct: 222 GFTIVSLLSACAKIGALTLGKRVHVYMIKVGL--TRNLHSSNVLLDLYARCGRVEEAKTL 279
Query: 245 FVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTE-TKPNGVTFIGVLTACSHVGL 303
F M +N S++S+I+G A++G AI+LF M TE P +TF+G+L ACSH G+
Sbjct: 280 FDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGM 339
Query: 304 ------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALL 351
+ Y + P +H+ CMVDLL RAG +++A + ++ MP++PN +W LL
Sbjct: 340 VKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLL 399
Query: 352 GACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKK 411
GAC +H + ++A+ A + +LEP+ G+Y++LSN+YAS W DV ++R+ + G+KK
Sbjct: 400 GACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKK 459
Query: 412 NPGYSWLE-GDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSD 470
PG+S +E G+R +HEF GD +HP S I L ++ RL+++GY P + +V DV +
Sbjct: 460 VPGHSLVEVGNR--VHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEE 517
Query: 471 EEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRD 530
EEK+ ++ HSEK+A+AF L++T + + ++KNLR+C DCHL + S+V REIVVRD
Sbjct: 518 EEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRD 577
Query: 531 NMRFHHFQDGKCSCGNYW 548
RFHHF++G CSC +YW
Sbjct: 578 RSRFHHFKNGSCSCQDYW 595
|
|
| TAIR|locus:2144143 AT5G06540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
Identities = 222/554 (40%), Positives = 340/554 (61%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD 67
+F Q++ N F++ LIR + + Y M + I P + T L KA +E+
Sbjct: 73 IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMEC 132
Query: 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIV 127
V +G+Q H+Q + G F +D+YV N+++ MY CGF+ + ++F +M RDVVSWT ++
Sbjct: 133 VLVGEQTHSQIVRFG-FQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVA 191
Query: 128 AYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVT 187
Y G +E+A +F+E+P ++ W+ M+ GY +N +AI+ FE M+ GV +
Sbjct: 192 GYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETV 251
Query: 188 LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVG 247
+V VIS+CA LG +++ E S N+++G+AL+DM+ +CG I+ A +F G
Sbjct: 252 MVSVISSCAHLGALEFGERAYEYVVKSHMTV--NLILGTALVDMFWRCGDIEKAIHVFEG 309
Query: 248 MKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL---- 303
+ + + S+SS+I G A+HG AH A+ F M+ P VTF VL+ACSH GL
Sbjct: 310 LPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKG 369
Query: 304 --------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQ 355
K +G+ P +HY C+VD+LGRAG L EA + KM V+PN + GALLGAC+
Sbjct: 370 LEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACK 429
Query: 356 IHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGY 415
I++N E+A+ N L +++P+ G Y++LSNIYA AG WD + +R ++K +KK PG+
Sbjct: 430 IYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGW 489
Query: 416 SWLEGDRGVIHEFRAGD-LTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKK 474
S +E D G I++F GD HP +I++ ++L +++ GY+ N +DV +EEK+
Sbjct: 490 SLIEID-GKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKE 548
Query: 475 RILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRF 534
+ HSEKLA+A+G++ T PG T+RI+KNLR+CEDCH S+V GRE++VRD RF
Sbjct: 549 SSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRF 608
Query: 535 HHFQDGKCSCGNYW 548
HHF++G CSC +YW
Sbjct: 609 HHFRNGVCSCRDYW 622
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
Identities = 221/558 (39%), Positives = 332/558 (59%)
Query: 4 FPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACT 63
+ ++VF+ + FLW +IRG+ + S+ LY M ++T +L KAC+
Sbjct: 67 YAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACS 126
Query: 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWT 123
+ QIHAQ LG + +D+Y N++I Y G + +FD +PE D VSW
Sbjct: 127 NLSAFEETTQIHAQITKLG-YENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWN 185
Query: 124 ELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET 183
+I Y G M+ A LF ++ K+ ++WT M++GYVQ +EA++ F MQ + VE
Sbjct: 186 SVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEP 245
Query: 184 DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYR 243
D V+L +SACAQLG ++ W+ + + V+G LIDMY+KCG +++A
Sbjct: 246 DNVSLANALSACAQLGALEQGKWIHSYLNKTRIRM--DSVLGCVLIDMYAKCGEMEEALE 303
Query: 244 IFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL 303
+F +K+++V +++++I G+A HG AI F +M K KPN +TF VLTACS+ GL
Sbjct: 304 VFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGL 363
Query: 304 ------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALL 351
+ Y + P+ +HY C+VDLLGRAG L+EA + +++MP++PN +WGALL
Sbjct: 364 VEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALL 423
Query: 352 GACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKK 411
AC+IH+N E+ + L ++P G Y+ +NI+A WD + RRL+K G+ K
Sbjct: 424 KACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAK 483
Query: 412 NPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYD-VSD 470
PG S + + G HEF AGD +HP +IQ + +L+ +GY P L +L D V D
Sbjct: 484 VPGCSTISLE-GTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDD 542
Query: 471 EEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRD 530
+E++ I+ HSEKLA+ +GL+ T PG +RIMKNLR+C+DCH S++ R+IV+RD
Sbjct: 543 DEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRD 602
Query: 531 NMRFHHFQDGKCSCGNYW 548
RFHHF+DGKCSCG+YW
Sbjct: 603 RTRFHHFRDGKCSCGDYW 620
|
|
| TAIR|locus:2078653 AT3G02010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 870 (311.3 bits), Expect = 3.9e-108, Sum P(2) = 3.9e-108
Identities = 175/437 (40%), Positives = 260/437 (59%)
Query: 125 LIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD 184
L+ YA E A +F LP + V+WTA+++GYVQ ++ F +M+ + + D
Sbjct: 392 LVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRAD 451
Query: 185 YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRI 244
T V+ A A + + SG + NV GS L+DMY+KCGSI DA ++
Sbjct: 452 QSTFATVLKASASFASLLLGKQLHAFIIRSG--NLENVFSGSGLVDMYAKCGSIKDAVQV 509
Query: 245 FVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL- 303
F M RN S++++I A +G AAI F M+++ +P+ V+ +GVLTACSH G
Sbjct: 510 FEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFV 569
Query: 304 -----------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLG 352
YG++P HYACM+DLLGR G EA K++++MP EP+ +W ++L
Sbjct: 570 EQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLN 629
Query: 353 ACQIHRNPEIAQIAANHLFELEPDK-IGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKK 411
AC+IH+N +A+ AA LF +E + Y+ +SNIYA+AG W+ V V++ ++ G+KK
Sbjct: 630 ACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKK 689
Query: 412 NPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDE 471
P YSW+E + IH F + D THPN EI + + +L ++ +GY+P+ SV+ DV ++
Sbjct: 690 VPAYSWVEVNHK-IHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQ 748
Query: 472 EKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDN 531
K L HSE+LA+AF L++T G + +MKNLR C DCH + S+++ REI VRD
Sbjct: 749 MKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDT 808
Query: 532 MRFHHFQDGKCSCGNYW 548
RFHHF +G CSCG+YW
Sbjct: 809 SRFHHFSEGVCSCGDYW 825
|
|
| TAIR|locus:2126352 AT4G37380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1061 (378.5 bits), Expect = 2.7e-107, P = 2.7e-107
Identities = 218/556 (39%), Positives = 338/556 (60%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKD-SISLYCSMRREGIGPVSFTLSALFKACTEVL 66
+F Q + FL+TA I + G LKD + LY + I P FT S+L K+C+
Sbjct: 86 LFHQTIDPDLFLFTAAINTASING-LKDQAFLLYVQLLSSEINPNEFTFSSLLKSCS--- 141
Query: 67 DVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELI 126
G+ IH +L G D YV ++ +Y K G + ++KVFD MPER +VS T +I
Sbjct: 142 -TKSGKLIHTH-VLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMI 199
Query: 127 VAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGV-ETDY 185
YA G++E+A LF+ + +D V+W M+ GY Q+ P +A+ F+++ G + D
Sbjct: 200 TCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDE 259
Query: 186 VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIF 245
+T+V +SAC+Q+G ++ W+ + S NV V + LIDMYSKCGS+++A +F
Sbjct: 260 ITVVAALSACSQIGALETGRWIHVFVKSSRIRL--NVKVCTGLIDMYSKCGSLEEAVLVF 317
Query: 246 VGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVK-TETKPNGVTFIGVLTACSHVGL- 303
++++ ++++MI G+AMHG + A++LF +M T +P +TFIG L AC+H GL
Sbjct: 318 NDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLV 377
Query: 304 -----------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLG 352
+ YG+ P +HY C+V LLGRAG L+ A + ++ M ++ + +W ++LG
Sbjct: 378 NEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLG 437
Query: 353 ACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKN 412
+C++H + + + A +L L G Y++LSNIYAS G ++ V++VR L+K G+ K
Sbjct: 438 SCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKE 497
Query: 413 PGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEE 472
PG S +E + V HEFRAGD H S EI L + +R+++ GY PN +VL D+ + E
Sbjct: 498 PGISTIEIENKV-HEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETE 556
Query: 473 KKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNM 532
K++ L HSE+LA+A+GL++T PG+ ++I KNLR+C DCH S++ GR+IV+RD
Sbjct: 557 KEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRN 616
Query: 533 RFHHFQDGKCSCGNYW 548
RFHHF DG CSCG++W
Sbjct: 617 RFHHFTDGSCSCGDFW 632
|
|
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1060 (378.2 bits), Expect = 3.5e-107, P = 3.5e-107
Identities = 215/556 (38%), Positives = 334/556 (60%)
Query: 9 FEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGI-GPVSFTLSALFKACTEVLD 67
FEQ+ ++ W ++I G+ +G+ ++ ++ M R+ + P FTL+++ AC +
Sbjct: 235 FEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEK 294
Query: 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERD--VVSWTEL 125
+ +G+QIH+ I+ GF V N +I MY +CG + +R++ ++ +D + +T L
Sbjct: 295 LCIGKQIHSH-IVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTAL 353
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
+ Y GDM A +F L +D VAWTAM+ GY Q+ EAI F M G +
Sbjct: 354 LDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNS 413
Query: 186 VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIF 245
TL ++S + L + + + A SG I +V V +ALI MY+K G+I A R F
Sbjct: 414 YTLAAMLSVASSLASLSHGKQIHGSAVKSG--EIYSVSVSNALITMYAKAGNITSASRAF 471
Query: 246 VGMK-QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLK 304
++ +R+ S++SMI+ A HG A A++LF M+ +P+ +T++GV +AC+H GL
Sbjct: 472 DLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLV 531
Query: 305 CYG------------VSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLG 352
G + P+ HYACMVDL GRAG L+EA + +EKMP+EP+ WG+LL
Sbjct: 532 NQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLS 591
Query: 353 ACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKN 412
AC++H+N ++ ++AA L LEP+ G Y L+N+Y++ G W++ +++R+ +K +KK
Sbjct: 592 ACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKE 651
Query: 413 PGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEE 472
G+SW+E V H F D THP EI + + D ++ GY P+ SVL+D+ +E
Sbjct: 652 QGFSWIEVKHKV-HVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEV 710
Query: 473 KKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNM 532
K++IL HSEKLA+AFGL++T T+RIMKNLR+C DCH + S+++GREI+VRD
Sbjct: 711 KEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTT 770
Query: 533 RFHHFQDGKCSCGNYW 548
RFHHF+DG CSC +YW
Sbjct: 771 RFHHFKDGFCSCRDYW 786
|
|
| TAIR|locus:2130389 LOI1 "lovastatin insensitive 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 863 (308.9 bits), Expect = 2.2e-105, Sum P(2) = 2.2e-105
Identities = 180/447 (40%), Positives = 268/447 (59%)
Query: 116 ERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFER 175
+ DV LI Y + S+ +F E+ K+ V+W ++V YVQN + +A + R
Sbjct: 241 DTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLR 300
Query: 176 MQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKC 235
+ VET + V+SACA + ++ + A + + VGSAL+DMY KC
Sbjct: 301 SRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVE--RTIFVGSALVDMYGKC 358
Query: 236 GSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTET--KPNGVTFIG 293
G I+D+ + F M ++N+ + +S+I G+A G+ A+ LF +M PN +TF+
Sbjct: 359 GCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVS 418
Query: 294 VLTACSHVG-----LKC-------YGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVE 341
+L+ACS G +K YG+ P +HY+C+VD+LGRAG +E A + ++KMP++
Sbjct: 419 LLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQ 478
Query: 342 PNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVR 401
P VWGAL AC++H P++ +AA +LF+L+P GN+++LSN +A+AG W + + VR
Sbjct: 479 PTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVR 538
Query: 402 RLLKMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNL 461
LK G+KK GYSW+ + +H F+A D +H + EIQ L L + ++A GY+P+L
Sbjct: 539 EELKGVGIKKGAGYSWITV-KNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDL 597
Query: 462 RSVLYDVSDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQV 521
+ LYD+ +EEK + HSEKLALAFGLL+ +RI KNLRIC DCH F S
Sbjct: 598 KLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGS 657
Query: 522 IGREIVVRDNMRFHHFQDGKCSCGNYW 548
+ REI+VRDN RFH F+DG CSC +YW
Sbjct: 658 VKREIIVRDNNRFHRFKDGICSCKDYW 684
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 853 (305.3 bits), Expect = 5.8e-105, Sum P(2) = 5.8e-105
Identities = 180/441 (40%), Positives = 266/441 (60%)
Query: 125 LIVAYANNGDMESAGGLFNELP-LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET 183
LI Y G+M+ +F+ + +D V W +M++GY+ N +A++ M G
Sbjct: 558 LIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRL 617
Query: 184 DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYR 243
D V+SA A + ++ V + + ++VVVGSAL+DMYSKCG +D A R
Sbjct: 618 DSFMYATVLSAFASVATLERGMEVHACSVRACLE--SDVVVGSALVDMYSKCGRLDYALR 675
Query: 244 IFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDM-VKTETKPNGVTFIGVLTACSHVG 302
F M RN +S++SMI G+A HG+ A++LF M + +T P+ VTF+GVL+ACSH G
Sbjct: 676 FFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAG 735
Query: 303 L------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGAL 350
L YG++P +H++CM D+LGRAG L++ +EKMP++PN +W +
Sbjct: 736 LLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTV 795
Query: 351 LGAC-QIH-RNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408
LGAC + + R E+ + AA LF+LEP+ NY++L N+YA+ G W+D+ + R+ +K
Sbjct: 796 LGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDAD 855
Query: 409 LKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDV 468
+KK GYSW+ GV H F AGD +HP++ I + L +L +++ GY P LYD+
Sbjct: 856 VKKEAGYSWVTMKDGV-HMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDL 914
Query: 469 SDEEKKRILMTHSEKLALAFGLLTT-SPGATVRIMKNLRICEDCHLFMCGASQVIGREIV 527
E K+ IL HSEKLA+AF L S +RIMKNLR+C DCH S++ GR+I+
Sbjct: 915 EQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQII 974
Query: 528 VRDNMRFHHFQDGKCSCGNYW 548
+RD+ RFHHFQDG CSC ++W
Sbjct: 975 LRDSNRFHHFQDGACSCSDFW 995
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FFG8 | PP417_ARATH | No assigned EC number | 0.6024 | 0.9981 | 0.8325 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 548 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-131 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-124 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-50 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-45 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-34 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 4e-28 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-25 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 397 bits (1022), Expect = e-131
Identities = 190/556 (34%), Positives = 302/556 (54%), Gaps = 49/556 (8%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
R +F+++ +N W +I G + G+ +++ +L+ M +G T + +A +
Sbjct: 178 RRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
GQQ+H +L G D +V +I MY KCG + +R VFD MPE+ V+W +
Sbjct: 238 GSARAGQQLHC-CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSM 296
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
+ YA +G E EA+ + M+ +GV D
Sbjct: 297 LAGYALHGYSE-------------------------------EALCLYYEMRDSGVSIDQ 325
Query: 186 VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIF 245
T +I ++L ++++A +GF ++V +AL+D+YSK G ++DA +F
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP--LDIVANTALVDLYSKWGRMEDARNVF 383
Query: 246 VGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL-- 303
M ++N+ S++++I G+ HGR A+++F M+ PN VTF+ VL+AC + GL
Sbjct: 384 DRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443
Query: 304 ----------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGA 353
+ + + P HYACM++LLGR G L+EA M+ + P +P +W ALL A
Sbjct: 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTA 503
Query: 354 CQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNP 413
C+IH+N E+ ++AA L+ + P+K+ NY++L N+Y S+G + ++V LK GL +P
Sbjct: 504 CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563
Query: 414 GYSWLE-GDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEE 472
+W+E + H F +GD HP S EI Q L +L+ + GY +L DV ++E
Sbjct: 564 ACTWIEVKKQD--HSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDE 621
Query: 473 KKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNM 532
+K HSEKLA+AFGL+ TS ++I ++ RIC+DCH + + V REIVVRD
Sbjct: 622 EKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDAS 681
Query: 533 RFHHFQDGKCSCGNYW 548
RFHHF+ GKCSCG+YW
Sbjct: 682 RFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 383 bits (986), Expect = e-124
Identities = 194/553 (35%), Positives = 314/553 (56%), Gaps = 50/553 (9%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
VF +++ K+ WTA+I GY G ++ Y M ++ + P T++++ AC +
Sbjct: 343 EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
D+ +G ++H G S + V N +I MY KC + + +VF +PE+DV+SWT
Sbjct: 403 GDLDVGVKLHELAER-KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWT-- 459
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
+++ G N + EA+ +F +M ++ +
Sbjct: 460 -----------------------------SIIAGLRLNNRCFEALIFFRQML-LTLKPNS 489
Query: 186 VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIF 245
VTL+ +SACA++G + + +G G + + +AL+D+Y +CG ++ A+ F
Sbjct: 490 VTLIAALSACARIGALMCGKEIHAHVLRTGIG--FDGFLPNALLDLYVRCGRMNYAWNQF 547
Query: 246 VGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL-- 303
+++V S++ ++ G+ HG+ A++LF MV++ P+ VTFI +L ACS G+
Sbjct: 548 -NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606
Query: 304 ----------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGA 353
+ Y ++P+ HYAC+VDLLGRAG L EA + KMP+ P+ VWGALL A
Sbjct: 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNA 666
Query: 354 CQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNP 413
C+IHR+ E+ ++AA H+FEL+P+ +G YI+L N+YA AG WD+V+RVR+ ++ GL +P
Sbjct: 667 CRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726
Query: 414 GYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEK 473
G SW+E +G +H F D +HP EI L ++++A G + S + D + K
Sbjct: 727 GCSWVE-VKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSK 784
Query: 474 KRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMR 533
I HSE+LA+AFGL+ T PG + + KNL +CE+CH + S+++ REI VRD +
Sbjct: 785 DDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQ 844
Query: 534 FHHFQDGKCSCGN 546
FHHF+DG+CSCG+
Sbjct: 845 FHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 4e-50
Identities = 101/301 (33%), Positives = 158/301 (52%), Gaps = 36/301 (11%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
RLVF+++ ++ W A+I GY G + + L+ +MR + P T++++ AC +
Sbjct: 242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL 301
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
D LG+++H + G F D+ V N++I MY+ G G + KVF M +D VSWT
Sbjct: 302 GDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT-- 358
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
AM++GY +N P +A+E + M+ V D
Sbjct: 359 -----------------------------AMISGYEKNGLPDKALETYALMEQDNVSPDE 389
Query: 186 VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIF 245
+T+ V+SACA LG + + E+AE G I+ VVV +ALI+MYSKC ID A +F
Sbjct: 390 ITIASVLSACACLGDLDVGVKLHELAERKGL--ISYVVVANALIEMYSKCKCIDKALEVF 447
Query: 246 VGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG-LK 304
+ +++V S++S+I G ++ R A+ F M+ T KPN VT I L+AC+ +G L
Sbjct: 448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALM 506
Query: 305 C 305
C
Sbjct: 507 C 507
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 3e-45
Identities = 101/383 (26%), Positives = 184/383 (48%), Gaps = 47/383 (12%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD 67
VF ++ ++ F W L+ GY G+ +++ LY M G+ P +T + + C + D
Sbjct: 143 VFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202
Query: 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIV 127
++ G+++HA + G F D+ V N +I MYVKCG + +R VFD MP RD +SW
Sbjct: 203 LARGREVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWN---- 257
Query: 128 AYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVT 187
AM++GY +N + E +E F M+ V+ D +T
Sbjct: 258 ---------------------------AMISGYFENGECLEGLELFFTMRELSVDPDLMT 290
Query: 188 LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVG 247
+ VISAC LG + + +GF +V V ++LI MY GS +A ++F
Sbjct: 291 ITSVISACELLGDERLGREMHGYVVKTGF--AVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348
Query: 248 MKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACS-----HVG 302
M+ ++ S+++MI G+ +G A++ + M + P+ +T VL+AC+ VG
Sbjct: 349 METKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG 408
Query: 303 LKCYGVSPSTDHYA------CMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALL-GACQ 355
+K + ++ + ++++ + C+++AL++ +P E + W +++ G
Sbjct: 409 VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRL 467
Query: 356 IHRNPEIAQIAANHLFELEPDKI 378
+R E L L+P+ +
Sbjct: 468 NNRCFEALIFFRQMLLTLKPNSV 490
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 4e-34
Identities = 90/321 (28%), Positives = 141/321 (43%), Gaps = 51/321 (15%)
Query: 50 PVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRK 109
P S T AL +AC + + + + + GF D Y+ N ++ M+VKCG L +R+
Sbjct: 122 PAS-TYDALVEACIALKSIRCVKAV-YWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARR 179
Query: 110 VFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREA 169
+FDEMPER++ SW ++ G V REA
Sbjct: 180 LFDEMPERNLASWG-------------------------------TIIGGLVDAGNYREA 208
Query: 170 IEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANW--VCEIAEGSGFGPINNVVVGSA 227
F M G + + T V ++ A A LG + C + G + V A
Sbjct: 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV----GDTFVSCA 264
Query: 228 LIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPN 287
LIDMYSKCG I+DA +F GM ++ +++SM+ G+A+HG + A+ L+ +M + +
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324
Query: 288 GVTFIGVLTACS-----------HVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVE 336
TF ++ S H GL G +VDL + G +E+A + +
Sbjct: 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384
Query: 337 KMPVEPNGGVWGALLGACQIH 357
+MP + N W AL+ H
Sbjct: 385 RMPRK-NLISWNALIAGYGNH 404
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 4e-28
Identities = 51/132 (38%), Positives = 72/132 (54%), Gaps = 24/132 (18%)
Query: 413 PGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEE 472
PG W EG + +GD +HP + +L R++ +G P + + +DV EE
Sbjct: 1 PGCVWSEG-----KKTLSGDGSHP------TSKEELFQRIKVEGVVPETKEIGHDVDAEE 49
Query: 473 KKR------ILMTHSEKLALAFGLLTTSPGATVRIMKNL-RICEDCHLFMCGASQVIGRE 525
+ +L +H+EK ALA+GLLTT RI+K L R+C DCH F ++ GRE
Sbjct: 50 FRDNGIKGKLLASHAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGRE 103
Query: 526 IVVRDNMRFHHF 537
I+VRD RFHHF
Sbjct: 104 IIVRDPSRFHHF 115
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 2e-25
Identities = 101/390 (25%), Positives = 165/390 (42%), Gaps = 55/390 (14%)
Query: 21 TALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTIL 80
+ +R G L+ ++ L SM+ + ALF+ C V G ++ +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCS--RA 112
Query: 81 LGGFTS-DLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAG 139
L S + +GN M+ M+V+ G L + VF +MPERD+ SW L+ YA G +
Sbjct: 113 LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFD--- 169
Query: 140 GLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLG 199
EA+ + RM +AGV D T V+ C G
Sbjct: 170 ----------------------------EALCLYHRMLWAGVRPDVYTFPCVLRTCG--G 199
Query: 200 VIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSM 259
+ A A FG +V V +ALI MY KCG + A +F M +R+ S+++M
Sbjct: 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAM 259
Query: 260 ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG-------LKCYGVSP-- 310
I G+ +G ++LF M + P+ +T V++AC +G + Y V
Sbjct: 260 ISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319
Query: 311 STDHYAC--MVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAAN 368
+ D C ++ + G EA K+ +M + + W A++ + + P+ A +
Sbjct: 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMISGYEKNGLPDKA-LETY 377
Query: 369 HLFELE---PDKIGNYIILSNIYASAGMWD 395
L E + PD+I I S + A A + D
Sbjct: 378 ALMEQDNVSPDEI---TIASVLSACACLGD 404
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 6e-14
Identities = 60/213 (28%), Positives = 98/213 (46%), Gaps = 23/213 (10%)
Query: 167 REAIEYFERMQYAGVET-DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGP----INN 221
REA+E FE ++ T T ++ AC L I+ V E SGF P +N
Sbjct: 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163
Query: 222 VVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281
V++ M+ KCG + DA R+F M +RN+ S+ ++I G G A LF +M +
Sbjct: 164 VLL------MHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE 217
Query: 282 TETKPNGVTFIGVLTACSHVG-------LKCYGVSPST--DHY-AC-MVDLLGRAGCLEE 330
+ TF+ +L A + +G L C + D + +C ++D+ + G +E+
Sbjct: 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277
Query: 331 ALKMVEKMPVEPNGGVWGALLGACQIHRNPEIA 363
A + + MP E W ++L +H E A
Sbjct: 278 ARCVFDGMP-EKTTVAWNSMLAGYALHGYSEEA 309
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 29/181 (16%)
Query: 192 ISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK-- 249
+S CA I A V + + +G + + + LI +K G +D + +F M
Sbjct: 444 MSVCASSQDIDGALRVLRLVQEAGLKA--DCKLYTTLISTCAKSGKVDAMFEVFHEMVNA 501
Query: 250 --QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG 307
+ NV ++ ++I G A G+ A +G M KP+ V F +++AC G
Sbjct: 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG----A 557
Query: 308 VSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGAC----QIHRNPEIA 363
V + D A M +A E P++P+ GAL+ AC Q+ R E+
Sbjct: 558 VDRAFDVLAEM-----KA----------ETHPIDPDHITVGALMKACANAGQVDRAKEVY 602
Query: 364 Q 364
Q
Sbjct: 603 Q 603
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 3e-07
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 252 NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSH 300
+V +Y+++I G+ G+ A++LF +M K KPN T+ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 70/307 (22%), Positives = 125/307 (40%), Gaps = 42/307 (13%)
Query: 83 GFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMP----ERDVVSWTELIVAYANNGDMESA 138
G +D + T+I K G + +VF EM E +V ++ LI A G + A
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526
Query: 139 GGLFNELPLK----DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET-----DYVTLV 189
G + + K D+V + A+++ Q+ A + M ET D++T+
Sbjct: 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM---KAETHPIDPDHITVG 583
Query: 190 GVISACAQLGVIKYANWVCEIAEGS---GFGPINNVVVGSALIDMYSKCGSIDDAYRIFV 246
++ ACA G + A V ++ G + + V S S+ G D A I+
Sbjct: 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC-----SQKGDWDFALSIYD 638
Query: 247 GMKQRNVFS---YSSMILGFAMH-GRAHAAIQLFGDMVKTETKPNGVTFIGVLTACS--- 299
MK++ V + S ++ A H G A ++ D K K V++ ++ ACS
Sbjct: 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698
Query: 300 --------HVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP---VEPNGGVWG 348
+ +K + P+ ++ L L +AL+++ +M + PN +
Sbjct: 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758
Query: 349 ALLGACQ 355
LL A +
Sbjct: 759 ILLVASE 765
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 59/265 (22%), Positives = 113/265 (42%), Gaps = 26/265 (9%)
Query: 114 MPERDVVSWTELIVAYANNGDMESAGG---LFNELPLK-DKVAWTAMVTGYVQNAKPREA 169
+ + ++ L+ A++ D++ A L E LK D +T +++ ++ K
Sbjct: 432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAM 491
Query: 170 IEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229
E F M AGVE + T +I CA+ G + A I P + VV +ALI
Sbjct: 492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP--DRVVFNALI 549
Query: 230 DMYSKCGSIDDAYRIFVGMKQR------NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTE 283
+ G++D A+ + MK + + +++ A G+ A +++ + +
Sbjct: 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609
Query: 284 TKPNGVTFIGVLTACSHVG-----LKCY------GVSPSTDHYACMVDLLGRAGCLEEAL 332
K + + +CS G L Y GV P ++ +VD+ G AG L++A
Sbjct: 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669
Query: 333 KMVEKMPVE---PNGGVWGALLGAC 354
++++ + + +L+GAC
Sbjct: 670 EILQDARKQGIKLGTVSYSSLMGAC 694
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 2e-06
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQR----NVFSYSSMILGFA 264
+VV + LID Y K G +++A ++F MK+R NV++YS +I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKAC 62
+ + LI GY +G +++++ L+ M++ GI P +T S L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 148 KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQ 197
D V + ++ GY + K EA++ F M+ G++ + T +I +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 151 VAWTAMVTGYVQNAKPREAIEYFERMQYAGV 181
V + ++++GY + K EA+E F+ M+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 118 DVVSWTELIVAYANNGDMESAGGLFNELPLK----DKVAWTAMVTGY 160
DVV++ LI Y G +E A LFNE+ + + ++ ++ G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPN 287
+Y+++I G GR A++LF +M + +P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 18 FLWTALIRGYILQGHLKDSISLYCSMRREGIGP 50
+ LI G G +++++ L+ M+ GI P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 548 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.83 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.76 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.74 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.73 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.73 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.64 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.63 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.57 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.52 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.51 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.51 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.47 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.47 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.47 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.47 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.45 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.44 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.43 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.43 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.43 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.36 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.36 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.35 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.35 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.33 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.33 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.32 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.27 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.27 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.25 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.24 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.21 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.2 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.18 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.17 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.16 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.16 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.15 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.14 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.07 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.07 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.06 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.06 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.03 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.01 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.01 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.94 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.94 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.93 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.92 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.91 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.9 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.9 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.89 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.88 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.88 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.84 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.76 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.74 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.74 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.7 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.69 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.67 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.65 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.65 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.63 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.61 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.59 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.59 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.57 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.57 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.54 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.54 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.5 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.48 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.46 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.46 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.46 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.46 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.45 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.43 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.43 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.39 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.38 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.38 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.38 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.37 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.35 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.34 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.33 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.26 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.24 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.24 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.23 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.23 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.23 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.22 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.2 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.19 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.16 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.15 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.15 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.14 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.11 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.09 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.08 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.07 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.06 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.04 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.02 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.99 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.98 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.96 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.96 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.94 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.93 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.91 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.9 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.88 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.87 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.85 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.71 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.7 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.67 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.61 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.59 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.55 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.53 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.5 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.46 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.42 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.42 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.41 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.39 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.38 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.36 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.33 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.31 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.28 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.24 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.22 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.2 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.18 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.17 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.17 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.16 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.15 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.15 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.11 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.1 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.09 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.08 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.05 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.05 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.02 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.01 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.99 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.93 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.91 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.86 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.85 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.83 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.8 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.79 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.77 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.77 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.76 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.74 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.7 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.69 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.63 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.52 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.51 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.39 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.38 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.38 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.33 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.32 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.29 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.29 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.19 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.14 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.09 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.04 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.96 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.92 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.79 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.75 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.69 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.62 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.6 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.55 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.5 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.47 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.41 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.33 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.27 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 95.11 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.04 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.99 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.98 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.87 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.76 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.73 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.68 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.67 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.63 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 94.56 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.54 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.48 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 94.42 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.25 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.24 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.11 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.1 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.08 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.05 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.01 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.97 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.89 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.86 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.79 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.6 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.49 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.42 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.39 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.26 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.16 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.15 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.09 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.84 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.79 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.39 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.98 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.95 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.88 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.84 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.82 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.71 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.65 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.49 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.34 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.19 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.12 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.79 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.76 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.69 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.67 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 90.67 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.31 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.04 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.96 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.73 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 89.7 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.64 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.57 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 89.36 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 89.15 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.1 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.82 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.72 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.57 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 87.67 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 87.51 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.4 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.34 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 87.11 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.68 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 86.67 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 86.62 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.09 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.92 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 85.71 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 85.59 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.32 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.19 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.09 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 84.9 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 84.78 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 84.31 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 83.46 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 83.44 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 82.6 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.34 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.23 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.18 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 81.23 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 81.0 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.56 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 80.17 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-111 Score=899.47 Aligned_cols=530 Identities=37% Similarity=0.655 Sum_probs=495.7
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHH
Q 038673 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREG-IGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNT 93 (548)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 93 (548)
++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.+.++|..|.+.| +.||..+||.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~ 163 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNR 163 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHH
Confidence 355678888888888888888888888887654 67888888888888888888888888888888887 8888888888
Q ss_pred HHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHH--------------------------------
Q 038673 94 MIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGL-------------------------------- 141 (548)
Q Consensus 94 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~-------------------------------- 141 (548)
|+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|.++
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 888888888888888888888887777777777777666666666555
Q ss_pred --------------------------------------HccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC
Q 038673 142 --------------------------------------FNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET 183 (548)
Q Consensus 142 --------------------------------------f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 183 (548)
|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 555566789999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHH
Q 038673 184 DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGF 263 (548)
Q Consensus 184 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 263 (548)
|..||++++.+|++.|++++|.++|+.|.+.|+.| +..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~--d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL--DIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC--CeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC------------ccCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 038673 264 AMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL------------KCYGVSPSTDHYACMVDLLGRAGCLEEA 331 (548)
Q Consensus 264 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~------------~~~~~~p~~~~~~~li~~~~~~g~~~~A 331 (548)
+++|+.++|+++|++|.+.|+.||..||+++|.+|++.|. .++|+.|+..+|++|+++|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 9999999999999999999999999999999999999996 4579999999999999999999999999
Q ss_pred HHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 038673 332 LKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKK 411 (548)
Q Consensus 332 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 411 (548)
.+++++|+.+|+..+|++|+.+|..+|+++.|+.+++++.++.|++..+|..|+++|++.|+|++|.++++.|+++|+++
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCCccccccCChHHHhhhhhhhhHHHHHHHhcc
Q 038673 412 NPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKKRILMTHSEKLALAFGLL 491 (548)
Q Consensus 412 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~ 491 (548)
.|++|||+++ +++|.|++|+..||+.++|++.+.++..+|++.||.||+.++++++++++|+..+.+||||||++||++
T Consensus 562 ~~g~s~i~~~-~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~ 640 (697)
T PLN03081 562 HPACTWIEVK-KQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLI 640 (697)
T ss_pred CCCeeEEEEC-CeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCc
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecccccCCCcchhhhhhhhcCceEEEecCCcccccccccccCCCCC
Q 038673 492 TTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRFHHFQDGKCSCGNYW 548 (548)
Q Consensus 492 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~g~~s~~~~w 548 (548)
++|+|.||||+||||+|+|||+|+|+||++.+|+|||||.+|||||+||+|||+|||
T Consensus 641 ~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 641 NTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred cCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-110 Score=918.05 Aligned_cols=539 Identities=39% Similarity=0.759 Sum_probs=519.7
Q ss_pred CCcchHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHH
Q 038673 1 MDSFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTIL 80 (548)
Q Consensus 1 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 80 (548)
++++|+++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..+.+
T Consensus 237 ~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 237 DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred CHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHH-------------------
Q 038673 81 LGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGL------------------- 141 (548)
Q Consensus 81 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~------------------- 141 (548)
.| +.||..+||+|+.+|+++|++++|.++|++|.+||.++||++|.+|++.|++++|.++
T Consensus 317 ~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l 395 (857)
T PLN03077 317 TG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395 (857)
T ss_pred hC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence 99 9999999999999999999999999999999999999999999888888887777776
Q ss_pred ---------------------------------------------------HccCCCCChhHHHHHHHHHHHCCChhHHH
Q 038673 142 ---------------------------------------------------FNELPLKDKVAWTAMVTGYVQNAKPREAI 170 (548)
Q Consensus 142 ---------------------------------------------------f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 170 (548)
|++|.++|+++||+||.+|+++|+.++|+
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHH
Confidence 44455678888999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 038673 171 EYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ 250 (548)
Q Consensus 171 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 250 (548)
.+|++|.. +++||..||++++.+|++.|+++.+.++|..+.+.|+.| +..++|+|+++|+++|++++|.++|+.+ .
T Consensus 476 ~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~--~~~~~naLi~~y~k~G~~~~A~~~f~~~-~ 551 (857)
T PLN03077 476 IFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF--DGFLPNALLDLYVRCGRMNYAWNQFNSH-E 551 (857)
T ss_pred HHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc--cceechHHHHHHHHcCCHHHHHHHHHhc-C
Confidence 99999975 589999999999999999999999999999999999995 9999999999999999999999999999 9
Q ss_pred CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC------------ccCCCCcCHHHHHHH
Q 038673 251 RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL------------KCYGVSPSTDHYACM 318 (548)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~------------~~~~~~p~~~~~~~l 318 (548)
+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+++|.+|++.|+ ..+|+.|+..+|++|
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999996 378999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHH
Q 038673 319 VDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVS 398 (548)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 398 (548)
+++|++.|++++|.+++++|+++||..+|++|+.+|..+++.+.|+.+.+++++++|+++..|..|+++|++.|+|++|.
T Consensus 632 v~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccCCceeEEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCCccccccCChHHHhhhhh
Q 038673 399 RVRRLLKMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKKRILM 478 (548)
Q Consensus 399 ~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~ 478 (548)
++++.|+++|++++||+|||+++ +++|.|++|+.+||+.++|+..|.++..+|++.||.||++.++ ++++++|+..++
T Consensus 712 ~vr~~M~~~g~~k~~g~s~ie~~-~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~ 789 (857)
T PLN03077 712 RVRKTMRENGLTVDPGCSWVEVK-GKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFC 789 (857)
T ss_pred HHHHHHHHcCCCCCCCccEEEEC-CEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHH
Confidence 99999999999999999999999 9999999999999999999999999999999999999999888 558889999999
Q ss_pred hhhHHHHHHHhccCCCCCCcEEEEecccccCCCcchhhhhhhhcCceEEEecCCcccccccccccCCC
Q 038673 479 THSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRFHHFQDGKCSCGN 546 (548)
Q Consensus 479 ~~~e~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~g~~s~~~ 546 (548)
+||||||++|||++||+|.||||+||||+|+|||+++|+||++.+|+|||||.+|||||+||+|||+|
T Consensus 790 ~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 790 GHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred hccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-66 Score=565.78 Aligned_cols=519 Identities=28% Similarity=0.425 Sum_probs=447.2
Q ss_pred CCcchHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHH
Q 038673 1 MDSFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTIL 80 (548)
Q Consensus 1 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 80 (548)
++++|+++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.++|..+++
T Consensus 136 ~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 215 (857)
T PLN03077 136 ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215 (857)
T ss_pred ChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHH----------------------
Q 038673 81 LGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESA---------------------- 138 (548)
Q Consensus 81 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A---------------------- 138 (548)
.| +.||..++|+|+.+|+++|++++|.++|++|++||.++||++|.+|++.|++++|
T Consensus 216 ~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~l 294 (857)
T PLN03077 216 FG-FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294 (857)
T ss_pred cC-CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence 99 9999999999999999999999999999999988888888888777665555554
Q ss_pred ------------------------------------------------HHHHccCCCCChhHHHHHHHHHHHCCChhHHH
Q 038673 139 ------------------------------------------------GGLFNELPLKDKVAWTAMVTGYVQNAKPREAI 170 (548)
Q Consensus 139 ------------------------------------------------~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 170 (548)
.++|++|..+|+++||+||.+|++.|++++|+
T Consensus 295 l~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred HHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHH
Confidence 44566677788999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 038673 171 EYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ 250 (548)
Q Consensus 171 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 250 (548)
++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.| +..++++|+++|+++|++++|.++|++|.+
T Consensus 375 ~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~--~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS--YVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999995 999999999999999999999999999999
Q ss_pred CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC-----------ccCCCCcCHHHHHHHH
Q 038673 251 RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL-----------KCYGVSPSTDHYACMV 319 (548)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----------~~~~~~p~~~~~~~li 319 (548)
+|+++||+||.+|+++|+.++|+.+|++|.. ++.||..||+++|.+|++.|. .+.|+.++..++++|+
T Consensus 453 ~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi 531 (857)
T PLN03077 453 KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALL 531 (857)
T ss_pred CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHH
Confidence 9999999999999999999999999999986 699999999999999999986 6789999999999999
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHH
Q 038673 320 DLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFE--LEPDKIGNYIILSNIYASAGMWDDV 397 (548)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a 397 (548)
++|+++|++++|.++|+++ .||..+|+++|.+|.++|+.++|.++|++|.+ ..|+ ..+|..++.+|++.|++++|
T Consensus 532 ~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQG 608 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHH
Confidence 9999999999999999999 79999999999999999999999999999998 4555 45999999999999999999
Q ss_pred HHHHHHHH-hCCCccCCceeEEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCCccccccCChHHHhhh
Q 038673 398 SRVRRLLK-MTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKKRI 476 (548)
Q Consensus 398 ~~~~~~m~-~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~ 476 (548)
.++|+.|. +.|+.|+.......++ .....++.+++. +++++| ++.||...+...+..+...+.
T Consensus 609 ~~~f~~M~~~~gi~P~~~~y~~lv~---------~l~r~G~~~eA~----~~~~~m---~~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 609 LEYFHSMEEKYSITPNLKHYACVVD---------LLGRAGKLTEAY----NFINKM---PITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHH---------HHHhCCCHHHHH----HHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 99999998 7899887643332232 444556677774 445555 588998776655554433222
Q ss_pred hhhhhHHHH-HHHhccCCCCCCcEEEEecccccCCCcchhhhhhhhcCceEEE-------ecCCccccccccccc
Q 038673 477 LMTHSEKLA-LAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVV-------RDNMRFHHFQDGKCS 543 (548)
Q Consensus 477 ~~~~~e~la-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~~g~~s 543 (548)
+... |..+ ..+.+.|..++..+.+..-+...|+..++.++...|..+.+.- --.+..|-|.-|--|
T Consensus 673 ~e~~-e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 673 VELG-ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred hHHH-HHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 2111 1111 2345566656666555556778899999999998887774321 113577888665443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-58 Score=496.66 Aligned_cols=406 Identities=19% Similarity=0.225 Sum_probs=354.0
Q ss_pred CCcchHHHhccCCCCCcch-----HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHH
Q 038673 1 MDSFPRLVFEQVKYKNPFL-----WTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIH 75 (548)
Q Consensus 1 ~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~ 75 (548)
++++|+++|++|+.++... ++.++.+|.+.|..++|+.+|+.|.. ||..+|+.++.+|++.|+++.|.++|
T Consensus 385 ~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf 460 (1060)
T PLN03218 385 RIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVL 460 (1060)
T ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3578999999998776554 45566778889999999999988874 89999999999999999999999999
Q ss_pred HHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCC----CCCeehHHHHHHHHHhCCChHHHHHHHccCC----C
Q 038673 76 AQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMP----ERDVVSWTELIVAYANNGDMESAGGLFNELP----L 147 (548)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~ 147 (548)
+.|.+.| +.||..+|++||.+|+++|++++|.++|++|. .||..+|++||.+|++.|++++|.++|++|. .
T Consensus 461 ~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 461 RLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred HHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 9999988 99999999999999999999999999999997 3889999999999999999999999999885 5
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHH--CCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHH
Q 038673 148 KDKVAWTAMVTGYVQNAKPREAIEYFERMQY--AGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVG 225 (548)
Q Consensus 148 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 225 (548)
||.++||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+.|.+.|+.| +..+|
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p--~~~ty 617 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG--TPEVY 617 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--ChHHH
Confidence 7889999999999999999999999999976 5789999999999999999999999999999999999885 88999
Q ss_pred HHHHHHHhcCCCHHHHHHHHhcCC----CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhc
Q 038673 226 SALIDMYSKCGSIDDAYRIFVGMK----QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV 301 (548)
Q Consensus 226 ~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 301 (548)
++++.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|+++|.+|++.
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 999999999999999999999987 4788999999999999999999999999999999999999999999999999
Q ss_pred CC-----------ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 038673 302 GL-----------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP---VEPNGGVWGALLGACQIHRNPEIAQIAA 367 (548)
Q Consensus 302 ~~-----------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 367 (548)
|. ...|+.||..+|+.||.+|++.|++++|.++|++|. +.||..||++++.+|.+.|+++.|.+++
T Consensus 698 G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 86 557889999999999999999999999999999884 7899999999999999999999999999
Q ss_pred HHHhhcC-CCCchhHHHHHHHHH----HcC-------------------CchHHHHHHHHHHhCCCccCC
Q 038673 368 NHLFELE-PDKIGNYIILSNIYA----SAG-------------------MWDDVSRVRRLLKMTGLKKNP 413 (548)
Q Consensus 368 ~~~~~~~-p~~~~~~~~l~~~~~----~~g-------------------~~~~a~~~~~~m~~~g~~~~~ 413 (548)
++|.+.. .++..+|..|+.+|. +++ ..++|..+|++|.+.|+.|+.
T Consensus 778 ~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 778 SQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 9998832 234557888876643 222 236799999999999998875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-58 Score=497.77 Aligned_cols=498 Identities=18% Similarity=0.215 Sum_probs=425.9
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHH
Q 038673 14 YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGI-GPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGN 92 (548)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (548)
.+|...|..++..+++.|++++|+++|++|...|+ .|+..+++.++.+|.+.|.+++|..++..| ..||..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M-----~~pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI-----RNPTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc-----CCCCHHHHH
Confidence 35777899999999999999999999999999996 468888899999999999999999999877 359999999
Q ss_pred HHHHHHHHcCChHHHHHHHccCCC----CCeehHHHHHHHHHhCCChHHHHHHHccCC----CCChhHHHHHHHHHHHCC
Q 038673 93 TMIGMYVKCGFLGCSRKVFDEMPE----RDVVSWTELIVAYANNGDMESAGGLFNELP----LKDKVAWTAMVTGYVQNA 164 (548)
Q Consensus 93 ~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g 164 (548)
.|+.+|++.|+++.|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|. .||..+|++||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 999999999999999999999975 899999999999999999999999999998 689999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHH--cCCCCCChHhHHHHHHHHHhcCCCHHHHH
Q 038673 165 KPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEG--SGFGPINNVVVGSALIDMYSKCGSIDDAY 242 (548)
Q Consensus 165 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~p~~~~~~~~~li~~y~~~g~~~~A~ 242 (548)
++++|+++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+ .++.| +..+|++|+.+|+++|++++|.
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P--D~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP--DHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999986 67885 9999999999999999999999
Q ss_pred HHHhcCCC----CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC-----------ccCC
Q 038673 243 RIFVGMKQ----RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL-----------KCYG 307 (548)
Q Consensus 243 ~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----------~~~~ 307 (548)
++|+.|.+ |+..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|. .+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999985 67799999999999999999999999999999999999999999999999996 6789
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCCchhHH
Q 038673 308 VSPSTDHYACMVDLLGRAGCLEEALKMVEKMP---VEPNGGVWGALLGACQIHRNPEIAQIAANHLFE--LEPDKIGNYI 382 (548)
Q Consensus 308 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~ 382 (548)
+.|+..+|+.||.+|++.|++++|.++|++|. +.||..+|++||.+|.+.|++++|.+++++|.+ ..| +..+|.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~ 758 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYS 758 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHH
Confidence 99999999999999999999999999999994 789999999999999999999999999999987 345 556999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEccC------------CeEEEEEeCCCCCCC-hHHHHHHHHHHH
Q 038673 383 ILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSWLEGDR------------GVIHEFRAGDLTHPN-STEIQQALGDLL 449 (548)
Q Consensus 383 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~-~~~~~~~l~~l~ 449 (548)
.|+.+|++.|++++|.+++++|.+.|+.|+.......++. ..+..|-.+ ++. ..........++
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g---~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG---RPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc---ccccccchHHHHHHHH
Confidence 9999999999999999999999999999886433222210 111122111 111 011112345899
Q ss_pred HHHHHCCcccCCccccccCChHH-HhhhhhhhhHHHHHHHhccCCCCCCcE--EEEecccccCCC-cchhhhhhhhcCce
Q 038673 450 DRLQADGYQPNLRSVLYDVSDEE-KKRILMTHSEKLALAFGLLTTSPGATV--RIMKNLRICEDC-HLFMCGASQVIGRE 525 (548)
Q Consensus 450 ~~m~~~g~~pd~~~~~~~~~~~~-~~~~~~~~~e~la~~~~~~~~~~~~~~--~~~~~l~~~~~~-~~~~~~~~~~~~~~ 525 (548)
++|.+.|+.||..++...+ .|- +.+- ....+.+--.++..+.+++... .+++.+ +.. .+|..++..|..+.
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~-~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~G 910 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVL-GCLQLPHD-ATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHH-HHhccccc-HHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcC
Confidence 9999999999998887665 222 1111 1223444455777777666442 344543 322 47999999888886
Q ss_pred EE
Q 038673 526 IV 527 (548)
Q Consensus 526 ~~ 527 (548)
|+
T Consensus 911 i~ 912 (1060)
T PLN03218 911 VV 912 (1060)
T ss_pred CC
Confidence 64
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-56 Score=477.00 Aligned_cols=474 Identities=18% Similarity=0.224 Sum_probs=413.4
Q ss_pred CCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC----CCeehHHH
Q 038673 49 GPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE----RDVVSWTE 124 (548)
Q Consensus 49 ~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~ 124 (548)
.++..+|+.++.++.+.|++++|.++|+.|.+.+++.||..+|+.++.++++.++++.|.+++..|.+ ||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 34667899999999999999999999999998765789999999999999999999999999999974 89999999
Q ss_pred HHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHH
Q 038673 125 LIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYA 204 (548)
Q Consensus 125 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 204 (548)
++.+|++.|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 038673 205 NWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTET 284 (548)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 284 (548)
.++|..+.+.|+.| +..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+
T Consensus 244 ~~l~~~~~~~g~~~--d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 244 QQLHCCVLKTGVVG--DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHhCCCc--cceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999995 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHhhcCC-----------ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHH
Q 038673 285 KPNGVTFIGVLTACSHVGL-----------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGA 353 (548)
Q Consensus 285 ~p~~~t~~~ll~a~~~~~~-----------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 353 (548)
.||..||++++.+|++.|. .+.|+.||..+|++||++|++.|++++|.++|++|. +||..+|++||.+
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~ 400 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAG 400 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHH
Confidence 9999999999999999986 678899999999999999999999999999999998 7999999999999
Q ss_pred HHhcCCHHHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh-CCCccCCceeEEEccCCeEEEEEe
Q 038673 354 CQIHRNPEIAQIAANHLFE--LEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM-TGLKKNPGYSWLEGDRGVIHEFRA 430 (548)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~s~~~~~~~~~~~~~~ 430 (548)
|.++|+.++|.++|++|.+ ..| +..+|..++.+|++.|++++|.++|+.|.+ .|+.|+.......+ .
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li---------~ 470 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI---------E 470 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH---------H
Confidence 9999999999999999988 445 455999999999999999999999999976 68887754332222 3
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHCCcccCCccccccCChHHHhhhhhhhhHHHHHHHhccCCCCCCcEEEEecccccCC
Q 038673 431 GDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICED 510 (548)
Q Consensus 431 ~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~l~~~~~ 510 (548)
+....++.+++++ + +++.++.||..++...+..+.+.+.+..-.+.....+++.+...+..+.+.+-+..+|+
T Consensus 471 ~l~r~G~~~eA~~----~---~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 471 LLGREGLLDEAYA----M---IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHhcCCHHHHHH----H---HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 5566777777753 3 34558899988776655555444333211111112245555545566667788999999
Q ss_pred CcchhhhhhhhcCceEEE-------ecCCcccccccccc
Q 038673 511 CHLFMCGASQVIGREIVV-------RDNMRFHHFQDGKC 542 (548)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~~g~~ 542 (548)
..+|.+++..|..+.+-. .-.+..|.|.-|-.
T Consensus 544 ~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 544 QAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred HHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 999999999999886532 22345677765543
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-31 Score=209.30 Aligned_cols=106 Identities=53% Similarity=0.980 Sum_probs=95.5
Q ss_pred ceeEEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCCccccccCChHHH--------hhhhhhhhHHHH
Q 038673 414 GYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEK--------KRILMTHSEKLA 485 (548)
Q Consensus 414 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~e~la 485 (548)
|+||+++ |.|++|+.+||+. ++..++...||.|++..+.++++++++ ...+..||||||
T Consensus 2 ~~~w~~~-----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlA 68 (116)
T PF14432_consen 2 GCSWIEV-----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLA 68 (116)
T ss_pred CCCccce-----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHH
Confidence 6789633 9999999999988 455677788999999999998877655 568899999999
Q ss_pred HHHhccCCCCCCcEEEEecc-cccCCCcchhhhhhhhcCceEEEecCCcccccc
Q 038673 486 LAFGLLTTSPGATVRIMKNL-RICEDCHLFMCGASQVIGREIVVRDNMRFHHFQ 538 (548)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 538 (548)
++||++++ +|+||+ |||+|||+++|+||++.||+|+|||++|||||+
T Consensus 69 iafgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 69 IAFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HHhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 99999998 899999 999999999999999999999999999999996
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-25 Score=244.25 Aligned_cols=397 Identities=14% Similarity=0.072 Sum_probs=313.1
Q ss_pred cchHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHH
Q 038673 3 SFPRLVFEQVK---YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTI 79 (548)
Q Consensus 3 ~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 79 (548)
++|.++|+.+. +++...|+.+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.++
T Consensus 448 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 448 DKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555555544 2355677888888888888888888888877642 2345566667777777888888888888887
Q ss_pred HhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHH
Q 038673 80 LLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---RDVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAW 153 (548)
Q Consensus 80 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~ 153 (548)
+.. +.+..++..+...|.+.|+.++|...|+++.+ .+...+..++..|.+.|++++|..+++.+. ..+...|
T Consensus 527 ~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 604 (899)
T TIGR02917 527 TID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAW 604 (899)
T ss_pred HhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 765 66777888888888888888888888887754 345567778888888888888888888775 3467788
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHh
Q 038673 154 TAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYS 233 (548)
Q Consensus 154 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~ 233 (548)
..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|..+++.+.+..+. +..++..++..+.
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~ 680 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD---NTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHH
Confidence 888888888899999998888887653 345666777888888888999999988888876544 7788888888999
Q ss_pred cCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC-------
Q 038673 234 KCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL------- 303 (548)
Q Consensus 234 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~------- 303 (548)
+.|++++|.++++.+.+ .+...+..+...+...|++++|++.|+++... .|+..++..+..++.+.|.
T Consensus 681 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999998888864 35567888888889999999999999998884 4666777777788877775
Q ss_pred ---ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 304 ---KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VE-PNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 304 ---~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
.-...+.+...+..+...|...|++++|.+.|+++. .. ++..++..+...+...|+ ++|...++++.+..|+++
T Consensus 759 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~ 837 (899)
T TIGR02917 759 LEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIP 837 (899)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCc
Confidence 111234467888899999999999999999999874 33 457788888899999999 789999999999999999
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 379 GNYIILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 379 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
..+..++.+|...|++++|.++++++.+.+.
T Consensus 838 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 838 AILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999987664
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-23 Score=235.22 Aligned_cols=395 Identities=13% Similarity=0.041 Sum_probs=337.8
Q ss_pred CcchHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHH
Q 038673 2 DSFPRLVFEQVK---YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQT 78 (548)
Q Consensus 2 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~ 78 (548)
+++|.+.|+++. +.+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+...|+.++|...++.+
T Consensus 481 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 559 (899)
T TIGR02917 481 LAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKA 559 (899)
T ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456888887653 3456678889999999999999999999998753 346778888999999999999999999999
Q ss_pred HHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhH
Q 038673 79 ILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---RDVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVA 152 (548)
Q Consensus 79 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~ 152 (548)
.+.. +.+...+..++..|.+.|++++|..+++.+.+ .+..+|..+...|.+.|++++|...|+++. +.+...
T Consensus 560 ~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 637 (899)
T TIGR02917 560 AELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637 (899)
T ss_pred HHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 8875 67788889999999999999999999999864 466789999999999999999999998875 346778
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMY 232 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y 232 (548)
|..+...|.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.++++.+.+.... +...+..+...|
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~ 713 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK---AALGFELEGDLY 713 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC---ChHHHHHHHHHH
Confidence 9999999999999999999999998753 445778889999999999999999999999888754 778889999999
Q ss_pred hcCCCHHHHHHHHhcCCC--CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC-------
Q 038673 233 SKCGSIDDAYRIFVGMKQ--RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL------- 303 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~------- 303 (548)
.+.|++++|.+.|+.+.+ |+..++..++..+...|++++|.+.++++.+. .+.+...+..+...+...|.
T Consensus 714 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~ 792 (899)
T TIGR02917 714 LRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKH 792 (899)
T ss_pred HHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 999999999999998864 55677888899999999999999999999885 34456677777777777775
Q ss_pred ---ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 304 ---KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 304 ---~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
.-...+++..+++.+...+...|+ .+|+..+++.. ..|+ ..++..+...+...|++++|...++++++.+|.++
T Consensus 793 ~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 871 (899)
T TIGR02917 793 YRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAA 871 (899)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Confidence 111224577889999999999999 88999998873 4454 66777888889999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 379 GNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 379 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
.++..++.+|.+.|++++|.+++++|.
T Consensus 872 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 872 AIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999999999999999999999885
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-19 Score=182.52 Aligned_cols=291 Identities=17% Similarity=0.104 Sum_probs=220.5
Q ss_pred HHHHcCChHHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHHHHHHccCCCC-------ChhHHHHHHHHHHHCCCh
Q 038673 97 MYVKCGFLGCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESAGGLFNELPLK-------DKVAWTAMVTGYVQNAKP 166 (548)
Q Consensus 97 ~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~ 166 (548)
.+...|++++|...|+++.+ | +..++..+...+...|++++|..+++.+... ....+..+...|.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34455666666666666654 2 2335555666666666666666666655422 124577788888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCCh---HhHHHHHHHHHhcCCCHHHHHH
Q 038673 167 REAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINN---VVVGSALIDMYSKCGSIDDAYR 243 (548)
Q Consensus 167 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~~~li~~y~~~g~~~~A~~ 243 (548)
++|+.+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+ .. ...+..+...|.+.|++++|.+
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS-LRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 88888888887652 4456778888888888888998988888888766442 11 2345677888889999999999
Q ss_pred HHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHH
Q 038673 244 IFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVD 320 (548)
Q Consensus 244 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~ 320 (548)
.|+++.+ .+...+..+...|...|++++|+++|+++... .|+.. ..+++.++.
T Consensus 202 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~----------------------~~~~~~l~~ 257 (389)
T PRK11788 202 LLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYL----------------------SEVLPKLME 257 (389)
T ss_pred HHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhH----------------------HHHHHHHHH
Confidence 9998764 24557788888999999999999999999874 23211 245678889
Q ss_pred HHHHcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHH---cCCchH
Q 038673 321 LLGRAGCLEEALKMVEKMP-VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYAS---AGMWDD 396 (548)
Q Consensus 321 ~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~ 396 (548)
+|.+.|++++|.+.++++. ..|+...+..+...+.+.|++++|..+++++.+..|++. .+..++..+.. .|+.++
T Consensus 258 ~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~ 336 (389)
T PRK11788 258 CYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKE 336 (389)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchh
Confidence 9999999999999999874 568877778888999999999999999999999999877 56555655553 569999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 038673 397 VSRVRRLLKMTGLKKNPG 414 (548)
Q Consensus 397 a~~~~~~m~~~g~~~~~~ 414 (548)
+..++++|.+++++++|.
T Consensus 337 a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 337 SLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999999999985
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-19 Score=171.03 Aligned_cols=356 Identities=15% Similarity=0.142 Sum_probs=306.6
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChh-HHHHHH
Q 038673 18 FLWTALIRGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLY-VGNTMI 95 (548)
Q Consensus 18 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~li 95 (548)
.+|..+...+-..|++++|+.+++.|.+. +| ....|..+..++...|+.+.|.+.|...++. .|+.. +.+.+-
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lg 191 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---Ccchhhhhcchh
Confidence 57888999999999999999999999984 56 5678999999999999999999999999885 45444 445555
Q ss_pred HHHHHcCChHHHHHHHccCCC--CC-eehHHHHHHHHHhCCChHHHHHHHccCCCCC---hhHHHHHHHHHHHCCChhHH
Q 038673 96 GMYVKCGFLGCSRKVFDEMPE--RD-VVSWTELIVAYANNGDMESAGGLFNELPLKD---KVAWTAMVTGYVQNAKPREA 169 (548)
Q Consensus 96 ~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A 169 (548)
...-..|++++|...+.+..+ |. .+.|+.|...+-..|+.-.|+.-|++..+-| ...|-.|...|-..+.+++|
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 666678999999999888665 43 5789999999999999999999999987544 45888999999999999999
Q ss_pred HHHHHHHHHCCCCCC-HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcC
Q 038673 170 IEYFERMQYAGVETD-YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGM 248 (548)
Q Consensus 170 ~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 248 (548)
+..|.+.... .|+ .+.+..+...|-..|.++.|...|++.++..+. -...|+.|.+++-..|++.+|.+.+.+.
T Consensus 272 vs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~---F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 272 VSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN---FPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC---chHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 9999888764 554 556778888889999999999999999887754 7889999999999999999999999987
Q ss_pred CC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHc
Q 038673 249 KQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRA 325 (548)
Q Consensus 249 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~ 325 (548)
.. ....+.+.|...|...|..++|..+|....+ +.|... ...+.|...|-..
T Consensus 347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~a-----------------------aa~nNLa~i~kqq 401 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFA-----------------------AAHNNLASIYKQQ 401 (966)
T ss_pred HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhh-----------------------hhhhhHHHHHHhc
Confidence 74 3456788899999999999999999999887 555532 4578899999999
Q ss_pred CCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 038673 326 GCLEEALKMVEKM-PVEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRL 403 (548)
Q Consensus 326 g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 403 (548)
|++++|+.-+++. .++|+ ...++.+-..|...|+++.|.+.+.+++..+|.-..++..|+.+|-..|+..+|++-++.
T Consensus 402 gnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~ 481 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRT 481 (966)
T ss_pred ccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHH
Confidence 9999999999887 48898 788999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhCC
Q 038673 404 LKMTG 408 (548)
Q Consensus 404 m~~~g 408 (548)
..+..
T Consensus 482 aLklk 486 (966)
T KOG4626|consen 482 ALKLK 486 (966)
T ss_pred HHccC
Confidence 87533
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-18 Score=181.81 Aligned_cols=355 Identities=13% Similarity=0.017 Sum_probs=267.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 038673 19 LWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMY 98 (548)
Q Consensus 19 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 98 (548)
.+......+.+.|++++|+..|++.+. +.|+...|..+..++...|+++.|...++..++.. +.+...+..+..+|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 355667788899999999999999887 56888889999999999999999999999999875 66778899999999
Q ss_pred HHcCChHHHHHHHccCCC---------------------------------CCeehHHHHHHHH----------------
Q 038673 99 VKCGFLGCSRKVFDEMPE---------------------------------RDVVSWTELIVAY---------------- 129 (548)
Q Consensus 99 ~~~g~~~~A~~~~~~m~~---------------------------------~~~~~~~~li~~~---------------- 129 (548)
...|++++|...|..... ++..++..+...+
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 999999999765533211 1111111110000
Q ss_pred --------------------HhCCChHHHHHHHccCCC------CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC
Q 038673 130 --------------------ANNGDMESAGGLFNELPL------KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET 183 (548)
Q Consensus 130 --------------------~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 183 (548)
...+++++|.+.|++... .....|+.+...+...|++++|+..|++.... .|
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P 362 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DP 362 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC
Confidence 112567777777776542 23456777777888888888888888887764 34
Q ss_pred C-HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHH
Q 038673 184 D-YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSM 259 (548)
Q Consensus 184 ~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 259 (548)
+ ...|..+...+...|++++|...++.+++.... +..++..+...|...|++++|...|++..+ .+...|..+
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l 439 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE---DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH
Confidence 3 446777777778888888888888888776533 777888888888888888888888887764 345567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 260 ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 260 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
...+.+.|++++|+..|++.++ ..|+ +...|+.+..++...|++++|.+.|++..
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~--~~P~-----------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKK--NFPE-----------------------APDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCC-----------------------ChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7788888888888888888776 2343 34568888999999999999999998863
Q ss_pred -CCCCh-hH-------HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 340 -VEPNG-GV-------WGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 340 -~~p~~-~~-------~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
+.|+. .+ ++..+..+...|++++|...++++++++|++...+..++.+|.+.|++++|.+.+++..+.
T Consensus 495 ~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 495 ELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44431 11 1112223344699999999999999999999889999999999999999999999988653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-19 Score=173.81 Aligned_cols=362 Identities=14% Similarity=0.109 Sum_probs=309.7
Q ss_pred CCcchHHHhccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHH-HHHHhhccCCcHHHHHHHH
Q 038673 1 MDSFPRLVFEQVKY---KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSA-LFKACTEVLDVSLGQQIHA 76 (548)
Q Consensus 1 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~a~~~~~~~~~a~~~~~ 76 (548)
++++|...++.+.+ ..+..|-.+..++...|+.+.|.+.|...++ +.|+.....+ +.......|++++|...+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 46788888876653 4667899999999999999999999999887 5676654433 3333445788999999999
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CC-eehHHHHHHHHHhCCChHHHHHHHccCC---CCCh
Q 038673 77 QTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--RD-VVSWTELIVAYANNGDMESAGGLFNELP---LKDK 150 (548)
Q Consensus 77 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~ 150 (548)
..++.. +--..+|+.|...+-..|++..|..-|++... |+ ...|-.|-..|...+.+++|...+.+.. ....
T Consensus 209 kAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A 286 (966)
T KOG4626|consen 209 KAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA 286 (966)
T ss_pred HHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch
Confidence 998864 44466899999999999999999999999876 43 3578889999999999999999987754 3367
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD-YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
+.+..|...|-.+|..+-|+..|++.... .|+ ...|+.+..++-..|++.+|.+.|.......+. .....+.|.
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~---hadam~NLg 361 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN---HADAMNNLG 361 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc---cHHHHHHHH
Confidence 88999999999999999999999998875 555 457999999999999999999999999988765 888999999
Q ss_pred HHHhcCCCHHHHHHHHhcCCCCC---hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccC
Q 038673 230 DMYSKCGSIDDAYRIFVGMKQRN---VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCY 306 (548)
Q Consensus 230 ~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 306 (548)
+.|...|++++|..+|....+-. ....|.|...|-++|+.++|+..|++.+. ++|+..
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fA----------------- 422 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFA----------------- 422 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHH-----------------
Confidence 99999999999999999887532 35789999999999999999999999987 777743
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHH
Q 038673 307 GVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIIL 384 (548)
Q Consensus 307 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 384 (548)
..|+.+...|-..|+.+.|.+.+.+.- +.|. ....+.|.+.+...|++++|+..++..+++.|+.+.+|-.+
T Consensus 423 ------da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 423 ------DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred ------HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 568889999999999999999998774 7787 77889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchH
Q 038673 385 SNIYASAGMWDD 396 (548)
Q Consensus 385 ~~~~~~~g~~~~ 396 (548)
+.++----+|.+
T Consensus 497 lh~lq~vcdw~D 508 (966)
T KOG4626|consen 497 LHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHhcccc
Confidence 888766666666
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-17 Score=188.39 Aligned_cols=395 Identities=12% Similarity=0.015 Sum_probs=275.3
Q ss_pred CcchHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCh---hhHH------------HHHHHhh
Q 038673 2 DSFPRLVFEQVK---YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVS---FTLS------------ALFKACT 63 (548)
Q Consensus 2 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~------------~ll~a~~ 63 (548)
+++|...|++.. +.+...+..+...|.+.|++++|+..|++..+.. |+. ..+. .....+.
T Consensus 285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 285 GGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 456677776543 2356677888888888888888888888877643 322 1111 1233456
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHHHH
Q 038673 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESAGG 140 (548)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~ 140 (548)
..|++++|...++++++.. +.+...+..+..+|...|++++|.+.|++..+ | +...+..+...|. .++.++|..
T Consensus 363 ~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~ 439 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALA 439 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHH
Confidence 7788888888888888864 55667777788888888888888888888764 3 3445555666654 456788888
Q ss_pred HHccCCCCC------------hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHH
Q 038673 141 LFNELPLKD------------KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVC 208 (548)
Q Consensus 141 ~f~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 208 (548)
+++.+.... ...+..+...+...|++++|+..|++..+.. +-+...+..+...+.+.|++++|...+
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l 518 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALM 518 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777665321 1234456677888899999999999988753 224556677888889999999999999
Q ss_pred HHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCC----h---------hhhHHHHHHHHhcCCHHHHHHH
Q 038673 209 EIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRN----V---------FSYSSMILGFAMHGRAHAAIQL 275 (548)
Q Consensus 209 ~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~A~~l 275 (548)
+.+.+..+. +...+..+...+.+.|+.++|...++.+.... . ..+..+...+...|+.++|+.+
T Consensus 519 ~~al~~~P~---~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 519 RRLAQQKPN---DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHcCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 998876543 56666666666777888888888888775321 1 1122345566777888888777
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhhcCC---------ccCCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-
Q 038673 276 FGDMVKTETKPNGVTFIGVLTACSHVGL---------KCYGVSP-STDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN- 343 (548)
Q Consensus 276 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~- 343 (548)
++. .+++...+..+-..+.+.|. ......| +...+..++..|...|++++|++.++... ..|+
T Consensus 596 l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 596 LRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred HHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence 761 22333344444445555554 1111223 56788899999999999999999999875 4555
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc------hhHHHHHHHHHHcCCchHHHHHHHHHH-hCCCc
Q 038673 344 GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKI------GNYIILSNIYASAGMWDDVSRVRRLLK-MTGLK 410 (548)
Q Consensus 344 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~~ 410 (548)
...+..+..++...|++++|.+.++++++..|+++ ..+..++.++...|++++|.+.++... ..|+.
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 55566677888899999999999999998776554 256667899999999999999988775 33443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7e-18 Score=178.35 Aligned_cols=327 Identities=10% Similarity=-0.000 Sum_probs=267.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 038673 20 WTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYV 99 (548)
Q Consensus 20 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 99 (548)
.-.++..+.+.|++++|+.+++...... +-+...+..++.+....|+++.|...++.+++.. |.+...+..+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHH
Confidence 4456777889999999999999998853 2245566667777788999999999999999985 777888999999999
Q ss_pred HcCChHHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHHHHHHccCC--C-CChhHHHHHHHHHHHCCChhHHHHHH
Q 038673 100 KCGFLGCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESAGGLFNELP--L-KDKVAWTAMVTGYVQNAKPREAIEYF 173 (548)
Q Consensus 100 ~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~l~ 173 (548)
..|++++|...|++..+ | +...|..+...+...|++++|...++.+. . .+...+..+ ..+.+.|++++|...+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 99999999999999875 3 56688889999999999999999988763 2 234444444 3488899999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHH----HHHHHhcCC
Q 038673 174 ERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD----AYRIFVGMK 249 (548)
Q Consensus 174 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~----A~~~~~~~~ 249 (548)
+.+.+..-.++...+..+..++...|++++|...++.+.+.... +...+..+...|.+.|++++ |...|++..
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~---~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD---GAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 99877643344455556677888999999999999999987644 88899999999999999986 788998876
Q ss_pred C---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcC
Q 038673 250 Q---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAG 326 (548)
Q Consensus 250 ~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g 326 (548)
+ .+...+..+...+...|++++|+..+++... ..|+. ...+..+..+|.+.|
T Consensus 278 ~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~-----------------------~~a~~~La~~l~~~G 332 (656)
T PRK15174 278 QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDL-----------------------PYVRAMYARALRQVG 332 (656)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC-----------------------HHHHHHHHHHHHHCC
Confidence 4 3556889999999999999999999999987 45553 334666788999999
Q ss_pred CHHHHHHHHHhCC-CCCChhHHHH-HHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 327 CLEEALKMVEKMP-VEPNGGVWGA-LLGACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 327 ~~~~A~~~~~~m~-~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
++++|.+.++++. ..|+...+.. +..++...|+.++|...++++++..|++.
T Consensus 333 ~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 333 QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999885 5677544443 45678999999999999999999999864
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-18 Score=172.71 Aligned_cols=280 Identities=13% Similarity=0.118 Sum_probs=213.3
Q ss_pred hhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC-CC------eehHHHHHHHHHhCCC
Q 038673 62 CTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE-RD------VVSWTELIVAYANNGD 134 (548)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~------~~~~~~li~~~~~~g~ 134 (548)
+...|+++.|...+..+++.. +.+..++..+...|...|++++|..+++.+.. ++ ..++..+...|.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 345566666666666666654 44555666666666677777777766666554 11 1345666777777777
Q ss_pred hHHHHHHHccCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHccCChhHHHHH
Q 038673 135 MESAGGLFNELPL---KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY----VTLVGVISACAQLGVIKYANWV 207 (548)
Q Consensus 135 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~ 207 (548)
+++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+...|++++|...
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7777777777753 46678899999999999999999999999876533322 2345666778889999999999
Q ss_pred HHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--CC--hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038673 208 CEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--RN--VFSYSSMILGFAMHGRAHAAIQLFGDMVKTE 283 (548)
Q Consensus 208 ~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 283 (548)
++++.+.... +...+..+...|.+.|++++|.++|+++.+ |+ ..+++.++.+|...|+.++|...++++.+.
T Consensus 203 ~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 203 LKKALAADPQ---CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHhHCcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 9999887533 677888899999999999999999999874 33 346788999999999999999999999874
Q ss_pred CCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHh---cCC
Q 038673 284 TKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPNGGVWGALLGACQI---HRN 359 (548)
Q Consensus 284 ~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~---~~~ 359 (548)
.|+ ...+..++..+.+.|++++|..+++++- ..|+..+++.++..+.. .|+
T Consensus 279 -~p~------------------------~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~ 333 (389)
T PRK11788 279 -YPG------------------------ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGR 333 (389)
T ss_pred -CCC------------------------chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCcc
Confidence 344 2345778889999999999999998764 67999999988877654 558
Q ss_pred HHHHHHHHHHHhh
Q 038673 360 PEIAQIAANHLFE 372 (548)
Q Consensus 360 ~~~a~~~~~~~~~ 372 (548)
.+++..+++++.+
T Consensus 334 ~~~a~~~~~~~~~ 346 (389)
T PRK11788 334 AKESLLLLRDLVG 346 (389)
T ss_pred chhHHHHHHHHHH
Confidence 8888888888776
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.6e-17 Score=182.53 Aligned_cols=341 Identities=13% Similarity=0.053 Sum_probs=203.1
Q ss_pred hhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CCe---ehHHH------------
Q 038673 62 CTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--RDV---VSWTE------------ 124 (548)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~---~~~~~------------ 124 (548)
+...|++++|...++..++.. +.+..++..|..+|.+.|++++|...|++..+ |+. ..|..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 445677777777777777764 55677777777777777888888777777654 321 11221
Q ss_pred HHHHHHhCCChHHHHHHHccCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH-------
Q 038673 125 LIVAYANNGDMESAGGLFNELPL---KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISA------- 194 (548)
Q Consensus 125 li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~------- 194 (548)
....+.+.|++++|...|++... .+...+..+...+...|++++|++.|++..+.. +.+...+..+...
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHH
Confidence 12345677777777777776642 345566677777777788888887777776542 1222233222222
Q ss_pred -----------------------------------HHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHH
Q 038673 195 -----------------------------------CAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSID 239 (548)
Q Consensus 195 -----------------------------------~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~ 239 (548)
+...|++++|.+.++++++..+. +..++..+...|.+.|+++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~---~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG---SVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHH
Confidence 22334445555555544444322 4444444555555555555
Q ss_pred HHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh---------HHHHHHHHhhcCC----
Q 038673 240 DAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVT---------FIGVLTACSHVGL---- 303 (548)
Q Consensus 240 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---------~~~ll~a~~~~~~---- 303 (548)
+|...|+++.+ .+...+..+...+...|+.++|+..++.+......++... +......+...|.
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 55555544421 1222233333333444555555554444322111111110 1111222222332
Q ss_pred --ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 304 --KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 304 --~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
.-...+++...+..+...+.+.|++++|++.|++.. ..|+ ...+..+...+...|+.++|++.++.+.+..|+++.
T Consensus 593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~ 672 (1157)
T PRK11447 593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLN 672 (1157)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChH
Confidence 000123355566778888888888888888888774 4554 677788888888889999999998888888888888
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 380 NYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 380 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
.+..++.++...|++++|.++++.+.+..
T Consensus 673 ~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 673 TQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 88888888888899999999888887643
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-17 Score=173.22 Aligned_cols=326 Identities=10% Similarity=-0.011 Sum_probs=269.4
Q ss_pred hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--C-CeehHHHHHHH
Q 038673 52 SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--R-DVVSWTELIVA 128 (548)
Q Consensus 52 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~ 128 (548)
..-...++..+.+.|+++.|..+++..+... +.+......++......|++++|...|+++.+ | +...|..+...
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3445667788889999999999999999875 56666777777788889999999999999875 3 45678888999
Q ss_pred HHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHH
Q 038673 129 YANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYAN 205 (548)
Q Consensus 129 ~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 205 (548)
+.+.|++++|...|++.. ..+...|..+...+...|++++|...++.+...... +...+.. +..+...|++++|.
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~-~~~l~~~g~~~eA~ 197 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIAT-CLSFLNKSRLPEDH 197 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHH-HHHHHHcCCHHHHH
Confidence 999999999999999876 336778999999999999999999999988765322 2223333 33478889999999
Q ss_pred HHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHH----HHHHHHH
Q 038673 206 WVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHA----AIQLFGD 278 (548)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~l~~~ 278 (548)
..++.+.+.... .+......+...+.+.|++++|...|+++.+ .+...+..+...|...|++++ |+..|++
T Consensus 198 ~~~~~~l~~~~~--~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 198 DLARALLPFFAL--ERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHhcCCC--cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 999998877543 2455556677889999999999999998774 356778889999999999986 8999999
Q ss_pred HHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHh
Q 038673 279 MVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQI 356 (548)
Q Consensus 279 m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~ 356 (548)
..+ +.|+ +...+..+...+.+.|++++|...+++.. ..|+ ...+..+..++..
T Consensus 276 Al~--l~P~-----------------------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~ 330 (656)
T PRK15174 276 ALQ--FNSD-----------------------NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ 330 (656)
T ss_pred HHh--hCCC-----------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 987 4565 34568888999999999999999999874 5566 5567777789999
Q ss_pred cCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 357 HRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 357 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
.|++++|...++++.+..|+++..+..++.++...|++++|...+++..+..
T Consensus 331 ~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 331 VGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred CCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988777778889999999999999999887653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-17 Score=174.63 Aligned_cols=384 Identities=12% Similarity=0.048 Sum_probs=277.2
Q ss_pred CcchHHHhccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCcHHHHHHHHH
Q 038673 2 DSFPRLVFEQVKY---KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVLDVSLGQQIHAQ 77 (548)
Q Consensus 2 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~ 77 (548)
.++|.+++.+..+ .+...+..+...+.+.|++++|.++|++..+. .| +...+..+...+...|++++|...++.
T Consensus 31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l~~ 108 (765)
T PRK10049 31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALVKAKQ 108 (765)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4567777766543 23345888888888889999999999888774 34 455666777778888889999998888
Q ss_pred HHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHHHHHHccCCCCChh---
Q 038673 78 TILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESAGGLFNELPLKDKV--- 151 (548)
Q Consensus 78 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~--- 151 (548)
+++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+...|..++|++.++.... ++.
T Consensus 109 ~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~ 184 (765)
T PRK10049 109 LVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKR 184 (765)
T ss_pred HHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHH
Confidence 88874 66666 88888888888999999988888765 3 444566677778888888888888887765 211
Q ss_pred -----HHHHHHHHHH-----HCCCh---hHHHHHHHHHHHC-CCCCCHh-hHH----HHHHHHHccCChhHHHHHHHHHH
Q 038673 152 -----AWTAMVTGYV-----QNAKP---REAIEYFERMQYA-GVETDYV-TLV----GVISACAQLGVIKYANWVCEIAE 212 (548)
Q Consensus 152 -----~~~~li~~~~-----~~g~~---~~A~~l~~~m~~~-g~~p~~~-t~~----~ll~~~~~~g~~~~a~~~~~~~~ 212 (548)
....++..+. ..+++ ++|+..++.+.+. ...|+.. .+. ..+.++...|+.++|...|+.+.
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 1222222222 12233 6788888888753 2233321 111 11334566788999999999988
Q ss_pred HcCCC-CCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCC-------hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 038673 213 GSGFG-PINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRN-------VFSYSSMILGFAMHGRAHAAIQLFGDMVKTET 284 (548)
Q Consensus 213 ~~~~~-p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 284 (548)
+.+.. | .... ..+...|...|++++|...|+++.+.+ ...+..+..++...|++++|..+++++...
T Consensus 265 ~~~~~~P-~~a~--~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~-- 339 (765)
T PRK10049 265 AEGQIIP-PWAQ--RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN-- 339 (765)
T ss_pred ccCCCCC-HHHH--HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc--
Confidence 87643 2 2222 335778999999999999999876422 123555666788899999999999998873
Q ss_pred CCCHhhHHHHHHHHhhcCCccCCCCcC---HHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCC
Q 038673 285 KPNGVTFIGVLTACSHVGLKCYGVSPS---TDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRN 359 (548)
Q Consensus 285 ~p~~~t~~~ll~a~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~ 359 (548)
.|.......+ ..-.|+ ...+..+..++...|++++|+++++++. ..|+ ...+..+...+...|+
T Consensus 340 ~P~~~~~~~~-----------~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 340 SPPFLRLYGS-----------PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW 408 (765)
T ss_pred CCceEeecCC-----------CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 3332110000 011233 2345677888999999999999999974 4455 6778888899999999
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 360 PEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 360 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
++.|++.++++++++|+++..+..++..+.+.|+|++|..+++.+.+.
T Consensus 409 ~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 409 PRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-15 Score=159.11 Aligned_cols=352 Identities=11% Similarity=0.006 Sum_probs=269.0
Q ss_pred CcchHHHhccCC--CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCcHHHHHHHHHH
Q 038673 2 DSFPRLVFEQVK--YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVLDVSLGQQIHAQT 78 (548)
Q Consensus 2 ~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~ 78 (548)
++.|.+.|++.- .|+...|..+..+|.+.|++++|++.++..++. .| +...|..+..++...|++++|..-+..+
T Consensus 143 ~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~ 220 (615)
T TIGR00990 143 FNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGKYADALLDLTAS 220 (615)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567888887644 467788999999999999999999999999874 45 5568888999999999999997665444
Q ss_pred HHhCCC----------------------------CCChhHHHHH------------------------------HHHH--
Q 038673 79 ILLGGF----------------------------TSDLYVGNTM------------------------------IGMY-- 98 (548)
Q Consensus 79 ~~~~~~----------------------------~~~~~~~~~l------------------------------i~~~-- 98 (548)
...+++ +++...+..+ +..+
T Consensus 221 ~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (615)
T TIGR00990 221 CIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLK 300 (615)
T ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHH
Confidence 322101 1111111100 1111
Q ss_pred ----HHcCChHHHHHHHccCCCC------CeehHHHHHHHHHhCCChHHHHHHHccCCC--C-ChhHHHHHHHHHHHCCC
Q 038673 99 ----VKCGFLGCSRKVFDEMPER------DVVSWTELIVAYANNGDMESAGGLFNELPL--K-DKVAWTAMVTGYVQNAK 165 (548)
Q Consensus 99 ----~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~ 165 (548)
...+++++|.+.|+...+. +...|+.+...+...|++++|...|++... | +..+|..+...+...|+
T Consensus 301 ~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~ 380 (615)
T TIGR00990 301 SPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGD 380 (615)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC
Confidence 1125788899999877642 345688888889999999999999998753 3 46688899999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHH
Q 038673 166 PREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIF 245 (548)
Q Consensus 166 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~ 245 (548)
+++|+..|++..+.. +.+...+..+...+...|++++|...++..++..+. +...+..+...|.+.|++++|...|
T Consensus 381 ~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~---~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 381 PDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD---FIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc---CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998763 345678888889999999999999999999988754 7888999999999999999999999
Q ss_pred hcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHhhcCCccCCCCcCHHHHHHHHHH
Q 038673 246 VGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGV-TFIGVLTACSHVGLKCYGVSPSTDHYACMVDL 321 (548)
Q Consensus 246 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~ 321 (548)
++..+ .+...|+.+...+...|++++|++.|++.... .|+.. ++..+ ...++.....
T Consensus 457 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~-----------------~~l~~~a~~~ 517 (615)
T TIGR00990 457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNV-----------------LPLINKALAL 517 (615)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccH-----------------HHHHHHHHHH
Confidence 98764 45678999999999999999999999999873 34321 11000 0112223334
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 322 LGRAGCLEEALKMVEKM-PVEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 322 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
+...|++++|.+++++. ...|+ ...+..+...+...|++++|...++++.++.+...
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 45579999999999885 45566 45688888999999999999999999999877543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-14 Score=157.05 Aligned_cols=347 Identities=10% Similarity=-0.015 Sum_probs=262.5
Q ss_pred CcchHHHhcc---CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCcHHHHHHHHH
Q 038673 2 DSFPRLVFEQ---VKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVLDVSLGQQIHAQ 77 (548)
Q Consensus 2 ~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~ 77 (548)
+++|.++|++ ..+.+...+..+...+...|++++|+..+++..+. .| +.. +..+..++...|+.+.|...++.
T Consensus 65 ~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 65 WQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 4678888887 44556677888999999999999999999999885 44 455 88888889999999999999999
Q ss_pred HHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC-CCe------ehHHHHHHHHH-----hCCCh---HHHHHHH
Q 038673 78 TILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE-RDV------VSWTELIVAYA-----NNGDM---ESAGGLF 142 (548)
Q Consensus 78 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~------~~~~~li~~~~-----~~g~~---~~A~~~f 142 (548)
+++.. +.+...+..+..++...|..+.|.+.++.... |+. .....++.... ..+++ ++|++.+
T Consensus 142 al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 142 ALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHH
Confidence 99985 66777888889999999999999999998776 221 01122222222 22234 6677777
Q ss_pred ccCCC---CChh---H----HHHHHHHHHHCCChhHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHccCChhHHHHHHHHH
Q 038673 143 NELPL---KDKV---A----WTAMVTGYVQNAKPREAIEYFERMQYAGVE-TDYVTLVGVISACAQLGVIKYANWVCEIA 211 (548)
Q Consensus 143 ~~m~~---~~~~---~----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 211 (548)
+.+.. .++. . ....+..+...|++++|+..|+++.+.+-+ |+. ....+..++...|++++|...++.+
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 76652 1211 1 112234556789999999999999887632 332 2223567889999999999999998
Q ss_pred HHcCCCC-CChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCC------------------hhhhHHHHHHHHhcCCHHHH
Q 038673 212 EGSGFGP-INNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRN------------------VFSYSSMILGFAMHGRAHAA 272 (548)
Q Consensus 212 ~~~~~~p-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------------------~~~~~~li~~~~~~g~~~~A 272 (548)
.+..... .........|..++.+.|++++|.++++.+.+.+ ...+..+...+...|+.++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 8755321 0123556777778999999999999999887422 12345667788899999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHH
Q 038673 273 IQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGAL 350 (548)
Q Consensus 273 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~l 350 (548)
+++++++.. ..|+. ...+..+...+...|++++|++.+++.. ..|+ ...+..+
T Consensus 379 ~~~l~~al~--~~P~n-----------------------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~ 433 (765)
T PRK10049 379 EMRARELAY--NAPGN-----------------------QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ 433 (765)
T ss_pred HHHHHHHHH--hCCCC-----------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 999999987 35553 4567888899999999999999999885 6687 5556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 351 LGACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 351 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
...+...|++++|+.+++.+++..|+++.
T Consensus 434 a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 434 AWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 67888999999999999999999999984
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-14 Score=153.68 Aligned_cols=372 Identities=12% Similarity=0.046 Sum_probs=254.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhc-cCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc
Q 038673 23 LIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTE-VLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKC 101 (548)
Q Consensus 23 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 101 (548)
+...|.+.|++++|++++.++.+.+. .+..-...+-.++.. .++ +.+..++.. . ...|+.++..++..|.+.
T Consensus 188 ~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~-lk~d~~l~~ala~~yi~~ 260 (987)
T PRK09782 188 LLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----G-IFTDPQSRITYATALAYR 260 (987)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----h-cccCHHHHHHHHHHHHHC
Confidence 37788888888888888888888642 234445555566665 355 666666332 2 456788888899999999
Q ss_pred CChHHHHHHHccCCC-----CCeehHH------------------------------HHHHHHHhCCChHHHHHH-----
Q 038673 102 GFLGCSRKVFDEMPE-----RDVVSWT------------------------------ELIVAYANNGDMESAGGL----- 141 (548)
Q Consensus 102 g~~~~A~~~~~~m~~-----~~~~~~~------------------------------~li~~~~~~g~~~~A~~~----- 141 (548)
|+.++|.+++.+++. |...+|. .++..+.+.++++.++++
T Consensus 261 G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (987)
T PRK09782 261 GEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLP 340 (987)
T ss_pred CCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 999999998888863 2222221 113344455555544444
Q ss_pred ----------------------------------------------------------HccCCC--C----ChhHHHHHH
Q 038673 142 ----------------------------------------------------------FNELPL--K----DKVAWTAMV 157 (548)
Q Consensus 142 ----------------------------------------------------------f~~m~~--~----~~~~~~~li 157 (548)
|..... + +...-+-++
T Consensus 341 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 341 ANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred cchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 222211 1 122233455
Q ss_pred HHHHHCCC---hhHHHHH----------------------HHHHHH-CCC-CC--CHhhHHHHHHHHHccCChhHHHHHH
Q 038673 158 TGYVQNAK---PREAIEY----------------------FERMQY-AGV-ET--DYVTLVGVISACAQLGVIKYANWVC 208 (548)
Q Consensus 158 ~~~~~~g~---~~~A~~l----------------------~~~m~~-~g~-~p--~~~t~~~ll~~~~~~g~~~~a~~~~ 208 (548)
..|.+.+. ..+++.+ +..... .+. ++ +...+..+..++.. +..++|...+
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 55555544 2233222 111111 122 33 45566666666665 7888899988
Q ss_pred HHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 038673 209 EIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKP 286 (548)
Q Consensus 209 ~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 286 (548)
....... | +......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..+. .|
T Consensus 500 ~~Al~~~--P--d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P 573 (987)
T PRK09782 500 LQAEQRQ--P--DAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GL 573 (987)
T ss_pred HHHHHhC--C--chHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 8777665 3 223344455666789999999999987764 44556777778889999999999999999885 35
Q ss_pred CHhhHH-HHHHHHhhcCC---------ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHH
Q 038673 287 NGVTFI-GVLTACSHVGL---------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGAC 354 (548)
Q Consensus 287 ~~~t~~-~ll~a~~~~~~---------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~ 354 (548)
+..... .+.......|. ......|+...|..+..++.+.|++++|...+++.. ..|+ ...+..+-.++
T Consensus 574 ~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 574 GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL 653 (987)
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 543322 22233333343 334456788899999999999999999999999874 6676 56666777889
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 355 QIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 355 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
...|+.++|...++++++..|+++..+..++.+|...|++++|...+++..+..
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999987543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.6e-14 Score=150.02 Aligned_cols=385 Identities=12% Similarity=0.055 Sum_probs=232.2
Q ss_pred cchHHHhccCCCCCcc---hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh-hH--HHHHHHhhccCCcHHHHHHHH
Q 038673 3 SFPRLVFEQVKYKNPF---LWTALIRGYILQGHLKDSISLYCSMRREGIGPVSF-TL--SALFKACTEVLDVSLGQQIHA 76 (548)
Q Consensus 3 ~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~--~~ll~a~~~~~~~~~a~~~~~ 76 (548)
+.|+..|++..+.++. .-..++..+...|+.++|+..+++.. .|+.. .+ ..+...+...|+++.|.++++
T Consensus 51 ~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 51 APVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred HHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4566666655532222 12266666667777777777777666 23222 22 222345566677777777777
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CCeehHHHHHHHHHhCCChHHHHHHHccCCC--C-Chh
Q 038673 77 QTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--RDVVSWTELIVAYANNGDMESAGGLFNELPL--K-DKV 151 (548)
Q Consensus 77 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~ 151 (548)
.+++.. +.|..++..++..|...++.++|++.++++.. |+...+..++..+...++..+|++.++++.+ | +..
T Consensus 127 kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e 204 (822)
T PRK14574 127 SSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEE 204 (822)
T ss_pred HHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH
Confidence 777764 55566666666777777777777777777665 3333332333333334444446666666541 2 333
Q ss_pred HHHHHHHHHHHCCChhHHHHH------------------------------------------------HHHHHH-CCCC
Q 038673 152 AWTAMVTGYVQNAKPREAIEY------------------------------------------------FERMQY-AGVE 182 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l------------------------------------------------~~~m~~-~g~~ 182 (548)
.+..+..+..+.|-...|+++ ++.+.. .+-.
T Consensus 205 ~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~ 284 (822)
T PRK14574 205 VLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKD 284 (822)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCC
Confidence 334444444443333333322 222221 1111
Q ss_pred CCHh-h----HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC------
Q 038673 183 TDYV-T----LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR------ 251 (548)
Q Consensus 183 p~~~-t----~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------ 251 (548)
|... - ..-.+-++...++..++.+.++.+...+.+ ....+-.++.++|...+.+++|..+|..+...
T Consensus 285 p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~--~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~ 362 (822)
T PRK14574 285 PEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK--MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFR 362 (822)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC--CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccC
Confidence 2111 1 112334455566666677777666666544 34556666777777777777777777665431
Q ss_pred ---ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHhhcCCccCCCCcCH-HHHHHHHHHHHHcC
Q 038673 252 ---NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVT-FIGVLTACSHVGLKCYGVSPST-DHYACMVDLLGRAG 326 (548)
Q Consensus 252 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~~~~p~~-~~~~~li~~~~~~g 326 (548)
+......|.-+|...+++++|..+++++.+. .|..+. | |.......||- ..+..++..+...|
T Consensus 363 ~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~----------~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 363 NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVY----------GLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEecc----------CCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 1122345666666777777777777777652 221000 0 00001112222 34455678889999
Q ss_pred CHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 038673 327 CLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLL 404 (548)
Q Consensus 327 ~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 404 (548)
++.+|++.++++. ..| |...+..+-..+...|.+..|++.++.+..++|++..+...++..+...|+|++|..+.+..
T Consensus 431 dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999999985 345 57778888899999999999999999999999999999999999999999999999998777
Q ss_pred HhC
Q 038673 405 KMT 407 (548)
Q Consensus 405 ~~~ 407 (548)
.+.
T Consensus 511 ~~~ 513 (822)
T PRK14574 511 ISR 513 (822)
T ss_pred Hhh
Confidence 654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-13 Score=129.01 Aligned_cols=368 Identities=14% Similarity=0.135 Sum_probs=232.7
Q ss_pred hHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCC
Q 038673 5 PRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGF 84 (548)
Q Consensus 5 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 84 (548)
|.-+|+.. +++..++.+||.++++--..+.|.+++++-.....+.+..+||.+|.+.+-. .++++..+|++.. +
T Consensus 196 AdL~~E~~-PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqk-m 269 (625)
T KOG4422|consen 196 ADLLFETL-PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQK-M 269 (625)
T ss_pred HHHHHhhc-CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhh-c
Confidence 44444444 4566789999999999999999999999999888889999999999886543 3488899999998 9
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCC----CCChhHHHHHHHHH
Q 038673 85 TSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELP----LKDKVAWTAMVTGY 160 (548)
Q Consensus 85 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~ 160 (548)
.||.+|+|+++++.++.|+++.|++.+- +++.+|. +|...+|..+|..+
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aal---------------------------qil~EmKeiGVePsLsSyh~iik~f 322 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAAL---------------------------QILGEMKEIGVEPSLSSYHLIIKNF 322 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHH---------------------------HHHHHHHHhCCCcchhhHHHHHHHh
Confidence 9999999999999999999988776532 2233332 45555666666666
Q ss_pred HHCCChhH-HHHHHHHHHH----CCCCC----CHhhHHHHHHHHHccCChhHHHHHHHHHHHcC----CCC-CChHhHHH
Q 038673 161 VQNAKPRE-AIEYFERMQY----AGVET----DYVTLVGVISACAQLGVIKYANWVCEIAEGSG----FGP-INNVVVGS 226 (548)
Q Consensus 161 ~~~g~~~~-A~~l~~~m~~----~g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~p-~~~~~~~~ 226 (548)
.+.++..+ |..++.+... ..++| |...|.+.++.|.+..+.+.|.+++....... +.| .....-|.
T Consensus 323 ~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr 402 (625)
T KOG4422|consen 323 KRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYR 402 (625)
T ss_pred cccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHH
Confidence 66555533 3333333332 22222 44567788888889999999999888765321 111 01234566
Q ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcC
Q 038673 227 ALIDMYSKCGSIDDAYRIFVGMKQ----RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302 (548)
Q Consensus 227 ~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 302 (548)
.+....+....++.-...++.|.. |+..+..-++.+....|.++-.-++|.+|+..|..-+...-..++.-.++..
T Consensus 403 ~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 403 KFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 677888888888888888888874 5666677777788888888888888888888765444444333443333322
Q ss_pred CccCCCCcCHHHHHHHHHHHHHcCCHHHHH-HHHHhCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh---cCCCC
Q 038673 303 LKCYGVSPSTDHYACMVDLLGRAGCLEEAL-KMVEKMP-VEPNGGVWGALLGACQIHRNPEIAQIAANHLFE---LEPDK 377 (548)
Q Consensus 303 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~p~~ 377 (548)
. +-..|...-+.....-++ -++.++. ..-.+|. ..-.....+.....+.+.|..++|-+++..+.+ .-|..
T Consensus 483 ~--hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~ 558 (625)
T KOG4422|consen 483 L--HPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRS 558 (625)
T ss_pred C--CCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCC
Confidence 1 001121112221111110 0111111 1112221 223344555555666777777777777777754 22333
Q ss_pred chhHH---HHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 038673 378 IGNYI---ILSNIYASAGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 378 ~~~~~---~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 410 (548)
+ ..+ -+.+.-........|..+++.|...+..
T Consensus 559 p-~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 559 P-LLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred c-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 3 333 3334444556677777777777766664
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.8e-13 Score=143.20 Aligned_cols=347 Identities=11% Similarity=0.032 Sum_probs=247.4
Q ss_pred CCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHh-CCCCCChhHHHHHHHHHHHcCChH---H
Q 038673 31 GHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILL-GGFTSDLYVGNTMIGMYVKCGFLG---C 106 (548)
Q Consensus 31 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~---~ 106 (548)
+...++...+..|.+.. +-+....-.+--.....|+.++|.+++.+.... +.-..+....+-|+..|.+.+.+. +
T Consensus 356 ~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 356 RNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred CchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 55666666666666531 114444444444456778888888888887662 212234556667888888877633 3
Q ss_pred HHHH------------HccC-------------CC---C--CeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHH
Q 038673 107 SRKV------------FDEM-------------PE---R--DVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAM 156 (548)
Q Consensus 107 A~~~------------~~~m-------------~~---~--~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l 156 (548)
+..+ .... .. + +...|..+..++.. ++.++|...|.+.....+..++.+
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L 513 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHR 513 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHH
Confidence 3222 1111 10 1 34456666666665 788888886666543222234444
Q ss_pred --HHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc
Q 038673 157 --VTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK 234 (548)
Q Consensus 157 --i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~ 234 (548)
...+.+.|++++|...|+++... +|+...+..+..++...|+.+.|...++...+..+. ....+..+.....+
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~---~~~l~~~La~~l~~ 588 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG---DNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHh
Confidence 33445788999999888887543 444455566667778888888899888888876633 44555555555556
Q ss_pred CCCHHHHHHHHhcCCC--CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCH
Q 038673 235 CGSIDDAYRIFVGMKQ--RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPST 312 (548)
Q Consensus 235 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~ 312 (548)
.|++++|...|++..+ |+...|..+...+.+.|+.++|+..|++... ..|+. .
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~-----------------------~ 643 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNN-----------------------S 643 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC-----------------------H
Confidence 6889999888888774 6677788888888888999999999988887 45653 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 038673 313 DHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYAS 390 (548)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 390 (548)
..++.+...+...|++++|++.+++.. ..|+ ...+..+-.++...|+++.|+..+++++++.|++..+.........+
T Consensus 644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~ 723 (987)
T PRK09782 644 NYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQ 723 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHH
Confidence 567888889999999999999999874 5665 77888888999999999999999999999999999899999999999
Q ss_pred cCCchHHHHHHHHHHhCCC
Q 038673 391 AGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 391 ~g~~~~a~~~~~~m~~~g~ 409 (548)
..+++.|.+-+++...-.+
T Consensus 724 ~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 724 RFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHHHhhcCc
Confidence 9999999998887665444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-12 Score=136.78 Aligned_cols=347 Identities=12% Similarity=0.049 Sum_probs=264.9
Q ss_pred CcchHHHhccCCCCCcchHHHHH---HHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCcHHHHHHHHH
Q 038673 2 DSFPRLVFEQVKYKNPFLWTALI---RGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVLDVSLGQQIHAQ 77 (548)
Q Consensus 2 ~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~ 77 (548)
.++|+..+++...|+...+..+. ..|...|++++|+++|+++.+. .| |...+..++..+...++.++|.+.++.
T Consensus 84 ~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~ 161 (822)
T PRK14574 84 DQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATE 161 (822)
T ss_pred cHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 46788888877766544444333 4677789999999999999985 34 456677777888899999999999999
Q ss_pred HHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHHHHHHccCC--------
Q 038673 78 TILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESAGGLFNELP-------- 146 (548)
Q Consensus 78 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~-------- 146 (548)
+.+. .|+...+..++..+...++..+|.+.++++.+ | +...+..+..++.+.|-...|.++..+-+
T Consensus 162 l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~ 238 (822)
T PRK14574 162 LAER---DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHY 238 (822)
T ss_pred hccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHH
Confidence 8775 45555555555555556667669999998875 4 44556667777777777777766633211
Q ss_pred ----------------------------------------C-----CC-----hhHHHHHHHHHHHCCChhHHHHHHHHH
Q 038673 147 ----------------------------------------L-----KD-----KVAWTAMVTGYVQNAKPREAIEYFERM 176 (548)
Q Consensus 147 ----------------------------------------~-----~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m 176 (548)
. |. ....--.+.++...|++.++++.|+.|
T Consensus 239 ~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l 318 (822)
T PRK14574 239 RQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM 318 (822)
T ss_pred HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 0 11 011223455778889999999999999
Q ss_pred HHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCC----CCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCC
Q 038673 177 QYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGF----GPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRN 252 (548)
Q Consensus 177 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 252 (548)
...|.+....+-..+.++|...+.+++|..++..+..... .| .+......|.-+|...+++++|..+++.+.+..
T Consensus 319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~-~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNS-DDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCC-cchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 9988765666888999999999999999999999977542 12 355556889999999999999999999987521
Q ss_pred h------------------hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHH
Q 038673 253 V------------------FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDH 314 (548)
Q Consensus 253 ~------------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~ 314 (548)
+ ..+..++..+...|+..+|++.++++.. ..|. |...
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~-----------------------n~~l 452 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPA-----------------------NQNL 452 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC-----------------------CHHH
Confidence 1 1234567778899999999999999987 3444 5567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
...+.+.+...|.+.+|++.++... +.|+ ..+......+....+++++|..+.+.+.+..|+++.
T Consensus 453 ~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 453 RIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 8889999999999999999997765 5676 555666778888899999999999999999999984
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6e-12 Score=118.10 Aligned_cols=191 Identities=15% Similarity=0.140 Sum_probs=150.9
Q ss_pred cCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC---CCChhhhHHHHHHHHhcCCHHHHHH
Q 038673 198 LGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK---QRNVFSYSSMILGFAMHGRAHAAIQ 274 (548)
Q Consensus 198 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 274 (548)
.|++++|.+.|++.+...-. .+.....+.-.+-+.|++++|+..|-++. ..++...-.+.+.|-...+..+|++
T Consensus 503 ngd~dka~~~ykeal~ndas---c~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDAS---CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred cCcHHHHHHHHHHHHcCchH---HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 46888888888888776544 33333344556778899999999887764 4566677777788888889999999
Q ss_pred HHHHHHHcCCCCC-HhhHHHHHHHHhhcCC---------ccCC-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC
Q 038673 275 LFGDMVKTETKPN-GVTFIGVLTACSHVGL---------KCYG-VSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEP 342 (548)
Q Consensus 275 l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~---------~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p 342 (548)
++.+... +.|+ ...+..|-..|-+.|. ..+. ++-+.++...|..-|....-+++|..+|++.. ++|
T Consensus 580 ~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 580 LLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 9877665 5555 4555566667777776 2333 34478888899999999999999999999986 789
Q ss_pred ChhHHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 038673 343 NGGVWGALL-GACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGM 393 (548)
Q Consensus 343 ~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 393 (548)
+..-|..++ +++++.|+++.|..+++...+..|.+......|++++...|.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999 566789999999999999999999999999999999888875
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7e-11 Score=120.32 Aligned_cols=308 Identities=14% Similarity=0.173 Sum_probs=235.3
Q ss_pred CCcchHHHhccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCcHHHHHHHH
Q 038673 1 MDSFPRLVFEQVKY---KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVLDVSLGQQIHA 76 (548)
Q Consensus 1 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~ 76 (548)
++++|.+++.++-. .+...|.+|...|-+.|+.++++..+-..-. ..| |..-|..+..-..+.|+++.|.-+|.
T Consensus 154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 35778888877663 4667899999999999999999987754443 344 67788899888999999999999999
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCe-e-------hHHHHHHHHHhCCChHHHHHHHccCCC-
Q 038673 77 QTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDV-V-------SWTELIVAYANNGDMESAGGLFNELPL- 147 (548)
Q Consensus 77 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~-------~~~~li~~~~~~g~~~~A~~~f~~m~~- 147 (548)
.+++.. +++....-.-+.+|-+.|+...|...|.++.+.++ + .--.+++.|...++-+.|.+.++....
T Consensus 232 rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 232 RAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 999986 77877777788899999999999999988876322 1 222356677788888999998887664
Q ss_pred -C---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC---------------------------CCCHhhHHHHHHHHH
Q 038673 148 -K---DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGV---------------------------ETDYVTLVGVISACA 196 (548)
Q Consensus 148 -~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------------------------~p~~~t~~~ll~~~~ 196 (548)
. +...++.++..|.+...++.|......+..... .++... .-+.-++.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhh
Confidence 2 455789999999999999999999988876211 222222 12333445
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC----CChhhhHHHHHHHHhcCCHHHH
Q 038673 197 QLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ----RNVFSYSSMILGFAMHGRAHAA 272 (548)
Q Consensus 197 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A 272 (548)
+....+....+.....+....|..+...|.-+.++|...|++.+|..+|..+.. .+...|--+..+|...|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 666777777777778877765556889999999999999999999999999874 4667899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038673 273 IQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKM 338 (548)
Q Consensus 273 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 338 (548)
.+.|+..+. ..|+.. ..--.|...+.+.|+.++|.+.++.+
T Consensus 469 ~e~y~kvl~--~~p~~~-----------------------D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 469 IEFYEKVLI--LAPDNL-----------------------DARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHh--cCCCch-----------------------hhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 999999988 566643 22333444555555555555555554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-11 Score=112.38 Aligned_cols=318 Identities=16% Similarity=0.150 Sum_probs=203.7
Q ss_pred hhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHH--HHHcCChH-HHHHHHccCCC---CCeehHHHHH
Q 038673 53 FTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGM--YVKCGFLG-CSRKVFDEMPE---RDVVSWTELI 126 (548)
Q Consensus 53 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~-~A~~~~~~m~~---~~~~~~~~li 126 (548)
++=+.|++. ...|.+..+.-+++.|.+.| .+.+..+-..|... |.....+. .-++.|-.|.. .+..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW---- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc----
Confidence 345566654 45678888888999998888 77777776666654 33333322 22345555553 456666
Q ss_pred HHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHH
Q 038673 127 VAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANW 206 (548)
Q Consensus 127 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 206 (548)
+.|++.+ ++-+...++..++.+||.+.++--..+.|.++|++-.....+.+..+|+.+|.+.+-. .+++
T Consensus 191 ----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~ 259 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKK 259 (625)
T ss_pred ----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHH
Confidence 4555544 5555666778899999999999999999999999998888899999999999876533 3488
Q ss_pred HHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHH----hcCC----CCChhhhHHHHHHHHhcCCHHH-HHHHHH
Q 038673 207 VCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIF----VGMK----QRNVFSYSSMILGFAMHGRAHA-AIQLFG 277 (548)
Q Consensus 207 ~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~ 277 (548)
+..+|......| |..++|+++.+.++.|+++.|.+.+ .+|+ +|...+|.-+|.-+.+.++..+ |..+..
T Consensus 260 Lv~EMisqkm~P--nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 260 LVAEMISQKMTP--NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHhhcCC--chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 999999999996 9999999999999999988776543 2332 3555566666655555555432 222333
Q ss_pred HHHH----cCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-------CCCC---
Q 038673 278 DMVK----TETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-------VEPN--- 343 (548)
Q Consensus 278 ~m~~----~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~--- 343 (548)
++.. +.++|-..| +..-+..-++.+.+..+.+-|.++..-.. +.|+
T Consensus 338 dI~N~ltGK~fkp~~p~--------------------d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~ 397 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPT--------------------DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHR 397 (625)
T ss_pred HHHHhhccCcccCCCCc--------------------hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHH
Confidence 3222 112211111 23334455555556666666665544331 2233
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhh-cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 344 GGVWGALLGACQIHRNPEIAQIAANHLFE-LEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 344 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
...|..+..+.++....+.-...++.+.- +--.++.+...+.++..-.|.|+-.-+++..++..|.
T Consensus 398 ~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 398 NFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 23344555555555556666666665554 2222344666677777777777777777777776663
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.9e-14 Score=135.12 Aligned_cols=249 Identities=18% Similarity=0.195 Sum_probs=106.0
Q ss_pred HHHHHhCCChHHHHHHHccC-----CCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 038673 126 IVAYANNGDMESAGGLFNEL-----PLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGV 200 (548)
Q Consensus 126 i~~~~~~g~~~~A~~~f~~m-----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 200 (548)
...+.+.|++++|++++++. +..|...|..+.......+++++|...++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 33444455555555555321 1224455555556666677777777777777665422 33445555555 56777
Q ss_pred hhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCChhhhHHHHHHHHhcCCHHHHHHH
Q 038673 201 IKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK-----QRNVFSYSSMILGFAMHGRAHAAIQL 275 (548)
Q Consensus 201 ~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l 275 (548)
+++|.++.....+.. .+...+..++..|.+.|+++++..+++.+. ..+...|..+...+.+.|+.++|+..
T Consensus 93 ~~~A~~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 93 PEEALKLAEKAYERD----GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccc----cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777776654433 245556667777788888888888877743 24667788888888899999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCChhHHHHHHHH
Q 038673 276 FGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VEPNGGVWGALLGA 353 (548)
Q Consensus 276 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~ 353 (548)
+++..+ ..|+ |....+.++..+...|+.+++.++++... ...|+..|..+..+
T Consensus 169 ~~~al~--~~P~-----------------------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~ 223 (280)
T PF13429_consen 169 YRKALE--LDPD-----------------------DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAA 223 (280)
T ss_dssp HHHHHH--H-TT------------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred HHHHHH--cCCC-----------------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 999888 4455 34457778888888999998777777663 24567788899999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 354 CQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
+...|+.+.|...+++..+..|+++.....++.++...|+.++|.+++++..
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999987653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-11 Score=115.19 Aligned_cols=351 Identities=15% Similarity=0.056 Sum_probs=231.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCC-hhHHHHHHHH
Q 038673 20 WTALIRGYILQGHLKDSISLYCSMRREGIGPV-SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSD-LYVGNTMIGM 97 (548)
Q Consensus 20 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~ 97 (548)
+-..-.-|.++|.+++|++.|.+.++ ..|| +.-|.....+|...|+|+.+.+--...++. .|+ +..+..-.++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl---~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL---NPDYVKALLRRASA 192 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc---CcHHHHHHHHHHHH
Confidence 44455667789999999999999998 5788 566777777788999999888777776663 344 3455555666
Q ss_pred HHHcCChHHHHH------HHccCC-------------------------C--CCeehHHHHHHHHHhC------------
Q 038673 98 YVKCGFLGCSRK------VFDEMP-------------------------E--RDVVSWTELIVAYANN------------ 132 (548)
Q Consensus 98 ~~~~g~~~~A~~------~~~~m~-------------------------~--~~~~~~~~li~~~~~~------------ 132 (548)
+-..|++++|.. +++... + +-+..-.+.|..|...
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 666676665532 111111 0 1111112222222111
Q ss_pred C--------------------ChHHHHHHHccC-------CCCC---------hhHHHHHHHHHHHCCChhHHHHHHHHH
Q 038673 133 G--------------------DMESAGGLFNEL-------PLKD---------KVAWTAMVTGYVQNAKPREAIEYFERM 176 (548)
Q Consensus 133 g--------------------~~~~A~~~f~~m-------~~~~---------~~~~~~li~~~~~~g~~~~A~~l~~~m 176 (548)
+ .+..|.+.+.+- ...+ ..+...-...+.-.|+.-.|..-|+..
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 0 111111111110 0001 111111122234457777777777777
Q ss_pred HHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC---Ch
Q 038673 177 QYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR---NV 253 (548)
Q Consensus 177 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~ 253 (548)
....-.++. .|.-+..+|....+.++..+.|+.+.+.++. ++.+|.--..++.-.++++.|..=|++...- ++
T Consensus 353 I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~---n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~ 428 (606)
T KOG0547|consen 353 IKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE---NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA 428 (606)
T ss_pred HhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC---CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh
Confidence 665433222 2666667778888888888888888777655 7777777778888888888888888877653 34
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALK 333 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 333 (548)
..|-.+-.+..+.+++++++..|++.++ .++-.++.|+.....+...+++++|.+
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kk-------------------------kFP~~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKK-------------------------KFPNCPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------hCCCCchHHHHHHHHHhhHHhHHHHHH
Confidence 4555555566677788888888888877 344466789999999999999999999
Q ss_pred HHHhCC-CCCC---------hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 038673 334 MVEKMP-VEPN---------GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRL 403 (548)
Q Consensus 334 ~~~~m~-~~p~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 403 (548)
.|+... ++|+ +.+-..++-.- =.+++..|..+++++++++|....+|..|+..-.+.|+.++|+++|+.
T Consensus 484 ~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 484 QYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 998763 4444 22222333222 238999999999999999999999999999999999999999999986
Q ss_pred HH
Q 038673 404 LK 405 (548)
Q Consensus 404 m~ 405 (548)
-.
T Consensus 563 sa 564 (606)
T KOG0547|consen 563 SA 564 (606)
T ss_pred HH
Confidence 53
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.1e-11 Score=117.64 Aligned_cols=279 Identities=11% Similarity=0.023 Sum_probs=157.2
Q ss_pred cCCcHHHHHHHHHHHHhCCCCCChhHHHHH-HHHHHHcCChHHHHHHHccCCC--CCeehHH--HHHHHHHhCCChHHHH
Q 038673 65 VLDVSLGQQIHAQTILLGGFTSDLYVGNTM-IGMYVKCGFLGCSRKVFDEMPE--RDVVSWT--ELIVAYANNGDMESAG 139 (548)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~--~~~~~~~--~li~~~~~~g~~~~A~ 139 (548)
.|+++.|.+......+.. +++.++-.+ .....+.|+++.|...|.++.+ |+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 588888887766544432 233333333 3444788899999999888765 3332222 2244566666666666
Q ss_pred HHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 038673 140 GLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGF 216 (548)
Q Consensus 140 ~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 216 (548)
..++++. +.++.....+...|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------ 228 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------ 228 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH------------------------
Confidence 6666654 224556666677777777777777777777665533211 111000
Q ss_pred CCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 038673 217 GPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIG 293 (548)
Q Consensus 217 ~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 293 (548)
..+|..++....+..+.+...++++.+++ .++.....+..++...|+.++|.+++++..+. .||...
T Consensus 229 -----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--- 298 (398)
T PRK10747 229 -----QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--- 298 (398)
T ss_pred -----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH---
Confidence 01122222222223334444455555442 35555666666666666666666666666552 222210
Q ss_pred HHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038673 294 VLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLF 371 (548)
Q Consensus 294 ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 371 (548)
.++.+....++.+++.+.+++.. ..|+ +.....+-..|...+++++|...|+.+.
T Consensus 299 -----------------------~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 299 -----------------------VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred -----------------------HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11122223466666666666553 3454 3344455566777777777777777777
Q ss_pred hcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 372 ELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 372 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
+..|++. .+..|+.++.+.|+.++|.+++++-.
T Consensus 356 ~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 356 KQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred hcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777654 56677777777777777777766553
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.7e-11 Score=121.56 Aligned_cols=328 Identities=16% Similarity=0.139 Sum_probs=195.8
Q ss_pred cCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCC---CCCeehHHHHHHHHHhCCChHHHHHH
Q 038673 65 VLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMP---ERDVVSWTELIVAYANNGDMESAGGL 141 (548)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~ 141 (548)
.|++++|..++.++++.. +.+...|.+|...|-..|+.+++...+-... ..|..-|-.+.....+.|.++.|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 377777777777777765 6666677777777777777777666543322 23445566666666666666666666
Q ss_pred HccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038673 142 FNELPLK---DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYV----TLVGVISACAQLGVIKYANWVCEIAEGS 214 (548)
Q Consensus 142 f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 214 (548)
|.+..+. +....---+..|-+.|+...|+.-|.++.+..-+.|.. +.-.++..+...++-+.|.+.+......
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 6655432 22222233445556666666666666665542111111 1222233344444445555555554442
Q ss_pred CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCh----------------------hhhH----HHHHHHH
Q 038673 215 GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ----RNV----------------------FSYS----SMILGFA 264 (548)
Q Consensus 215 ~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~----------------------~~~~----~li~~~~ 264 (548)
+..- .+...++.++.+|.+...++.|......+.. +|. .+|+ -++-++.
T Consensus 310 ~~~~-~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 310 EKDE-ASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred cccc-ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 1111 2444555566666666555555554443321 111 0111 0111222
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCC---
Q 038673 265 MHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVE--- 341 (548)
Q Consensus 265 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 341 (548)
..+..+....+..-.....+.| .-+...|.-+.++|...|++.+|+.+|..+...
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~----------------------~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWV----------------------SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred cccccchHHHHHHHHHHhcCCh----------------------hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 2222222222222222222222 224567888999999999999999999988522
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeE
Q 038673 342 PNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSW 417 (548)
Q Consensus 342 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 417 (548)
-+...|--+..++...|.++.|.+.+++++.+.|++..+-..|+.+|.+.|+.++|.+++..|..-+-...+++.|
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 2466898899999999999999999999999999999999999999999999999999999876333222244444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5e-12 Score=124.72 Aligned_cols=272 Identities=14% Similarity=0.033 Sum_probs=186.9
Q ss_pred hHHHHHHHccCCC--CCee-hHHHHHHHHHhCCChHHHHHHHccCCC------CChhHHHHHHHHHHHCCChhHHHHHHH
Q 038673 104 LGCSRKVFDEMPE--RDVV-SWTELIVAYANNGDMESAGGLFNELPL------KDKVAWTAMVTGYVQNAKPREAIEYFE 174 (548)
Q Consensus 104 ~~~A~~~~~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~ 174 (548)
..+|...|..+++ +|.. ....+..+|...+++++|+++|+.+.. .+...|.+.+..+-+. -++..+.
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHH
Confidence 4566666666554 3333 223455667777777777777776652 2556666666544221 1222222
Q ss_pred -HHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCCh
Q 038673 175 -RMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNV 253 (548)
Q Consensus 175 -~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 253 (548)
++... -+-...||..+...|+-.++.+.|.+.|+++++.+.. ...+|+.+..=+.....+|.|...|+.....|+
T Consensus 411 q~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~---faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 411 QDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR---FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc---cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 22221 1334567888888888888888888888888776644 778888888888888888888888888877666
Q ss_pred hhhHH---HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHH
Q 038673 254 FSYSS---MILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEE 330 (548)
Q Consensus 254 ~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 330 (548)
..||+ +...|.+.++++.|+-.|++..+ +.|.. ......+...+.+.|+.|+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~n-----------------------svi~~~~g~~~~~~k~~d~ 541 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSN-----------------------SVILCHIGRIQHQLKRKDK 541 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccc-----------------------hhHHhhhhHHHHHhhhhhH
Confidence 55544 55578888888888888888876 55553 3345566777888888888
Q ss_pred HHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 331 ALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 331 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
|++++++.- +.| |+..----...+...+++++|.+.++++.++.|++...|..++..|-+.|+.+.|+.-|.-+.+..
T Consensus 542 AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 542 ALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 888888773 333 333333344556667888999999999999999998899999999999999999888887776543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-13 Score=128.09 Aligned_cols=219 Identities=16% Similarity=0.136 Sum_probs=104.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCCC---CeehHHHHHHHHHhCCChHHHHHHHccCC--CCChhHHHHHHHHHHHCCC
Q 038673 91 GNTMIGMYVKCGFLGCSRKVFDEMPER---DVVSWTELIVAYANNGDMESAGGLFNELP--LKDKVAWTAMVTGYVQNAK 165 (548)
Q Consensus 91 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~ 165 (548)
|..+.......++.+.|.+.++++.+. +...+..++.. ...+++++|.+++...- .++...+..++..+.+.++
T Consensus 47 ~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 125 (280)
T PF13429_consen 47 WRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGD 125 (280)
T ss_dssp ------------------------------------------------------------------------H-HHHTT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhH
Confidence 333333333444444444444444331 12223333333 34455555555444432 2355667777888888889
Q ss_pred hhHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHH
Q 038673 166 PREAIEYFERMQYAG-VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRI 244 (548)
Q Consensus 166 ~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~ 244 (548)
++++..+++...... .+++...|..+...+.+.|+.++|...++.+++..+. +..+.+.++..+...|+.+++.++
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~---~~~~~~~l~~~li~~~~~~~~~~~ 202 (280)
T PF13429_consen 126 YDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD---DPDARNALAWLLIDMGDYDEAREA 202 (280)
T ss_dssp HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT----HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCChHHHHHH
Confidence 999988888876533 3456667777888888899999999999999888755 788888999999999999887777
Q ss_pred HhcCC---CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHH
Q 038673 245 FVGMK---QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDL 321 (548)
Q Consensus 245 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~ 321 (548)
+.... ..|...|..+..+|...|+.++|+..|++..+ ..|+ |+.....+.++
T Consensus 203 l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~-----------------------d~~~~~~~a~~ 257 (280)
T PF13429_consen 203 LKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPD-----------------------DPLWLLAYADA 257 (280)
T ss_dssp HHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT------------------------HHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc--cccc-----------------------ccccccccccc
Confidence 76654 35677888999999999999999999999887 3444 44457778889
Q ss_pred HHHcCCHHHHHHHHHhC
Q 038673 322 LGRAGCLEEALKMVEKM 338 (548)
Q Consensus 322 ~~~~g~~~~A~~~~~~m 338 (548)
+...|+.++|.++..+.
T Consensus 258 l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 258 LEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HT---------------
T ss_pred ccccccccccccccccc
Confidence 99999999999887664
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.7e-11 Score=121.23 Aligned_cols=388 Identities=12% Similarity=0.045 Sum_probs=225.7
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCC--CChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCC-hhH
Q 038673 14 YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIG--PVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSD-LYV 90 (548)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 90 (548)
..|++.-|.|..-|.-.|+++.++.+...+...... .-...|-.+.+++-..|+++.|.+.|-+..+.. +.+ +..
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~ 344 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLP 344 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCcccc
Confidence 347777888888888888888888888777764311 123457778888888888888888887777654 222 344
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCC--C-CeehHHHHHHHHHhCC----ChHHHHHHHccCCC----------------
Q 038673 91 GNTMIGMYVKCGFLGCSRKVFDEMPE--R-DVVSWTELIVAYANNG----DMESAGGLFNELPL---------------- 147 (548)
Q Consensus 91 ~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g----~~~~A~~~f~~m~~---------------- 147 (548)
+-.|..+|.+.|+++.+...|+.... | +..+...+...|+..+ ..+.|..++.+...
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 55677788888888888888887754 3 3345555555555553 34555555444332
Q ss_pred -------------------------CChhHHHHHHHHHHHCCChhHHHHHHHHHHHC---CCCCCH------hhHHHHHH
Q 038673 148 -------------------------KDKVAWTAMVTGYVQNAKPREAIEYFERMQYA---GVETDY------VTLVGVIS 193 (548)
Q Consensus 148 -------------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~------~t~~~ll~ 193 (548)
..+...|.+...+...|++++|...|...... ...+|. .+-..+..
T Consensus 425 e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 425 EQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred HhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 23334444444444455555555555444332 111121 11112222
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHH
Q 038673 194 ACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAH 270 (548)
Q Consensus 194 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 270 (548)
..-..++.+.|.+.|..+.+..+. -+..|--|+.+.-..+...+|...+..... .|+..|+.+-..|.....+.
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkehp~---YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEHPG---YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHCch---hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 333334455555555555444322 333333333233333444455555544432 34444544444555555555
Q ss_pred HHHHHHHHHHHcC-CCCCHhhHHHHHHHHhhcCC-----------------cc----CCC-CcCHHHHHHHHHHHHHcCC
Q 038673 271 AAIQLFGDMVKTE-TKPNGVTFIGVLTACSHVGL-----------------KC----YGV-SPSTDHYACMVDLLGRAGC 327 (548)
Q Consensus 271 ~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~-----------------~~----~~~-~p~~~~~~~li~~~~~~g~ 327 (548)
.|.+-|....+.- ..+|..+..+|=+.|...-. .. ... +.|...-|-+.-.++..|+
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccC
Confidence 5555444443321 12444444433332221110 00 111 1244455556677788899
Q ss_pred HHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 038673 328 LEEALKMVEKMP--VEPNGGVWGALLGACQIHRNPEIAQIAANHLFE--LEPDKIGNYIILSNIYASAGMWDDVSRVRRL 403 (548)
Q Consensus 328 ~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 403 (548)
+.+|..+|.+.. ..-+..+|-.+..+|...|++..|+++|+...+ ...+++.....|++++.+.|+|.+|.+....
T Consensus 662 ~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999999885 233567888899999999999999999999887 3334677888999999999999999988776
Q ss_pred HHh
Q 038673 404 LKM 406 (548)
Q Consensus 404 m~~ 406 (548)
...
T Consensus 742 a~~ 744 (1018)
T KOG2002|consen 742 ARH 744 (1018)
T ss_pred HHH
Confidence 654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.9e-10 Score=110.14 Aligned_cols=367 Identities=13% Similarity=0.049 Sum_probs=258.1
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 038673 18 FLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGM 97 (548)
Q Consensus 18 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 97 (548)
.+|+.-.+.|.+.+.++-|..+|...++- ++-+...|......=-..|..+....+++.++.. .+.....|-....-
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake 593 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKE 593 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHH
Confidence 35777777777777777777777777663 2224555666665555667777777777777765 35566666666777
Q ss_pred HHHcCChHHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHHHHHHccCC--CCChhHHHHHHHHHHHCCChhHHHHH
Q 038673 98 YVKCGFLGCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESAGGLFNELP--LKDKVAWTAMVTGYVQNAKPREAIEY 172 (548)
Q Consensus 98 ~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l 172 (548)
+...|++..|+.+++...+ | +...|-+-+..-..+.+++.|..+|.+.. .++...|..-+..---.++.++|+++
T Consensus 594 ~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 7777888888887777654 2 44567777777778888888888887765 34556666666666666778888888
Q ss_pred HHHHHHCCCCCCHh-hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-
Q 038673 173 FERMQYAGVETDYV-TLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ- 250 (548)
Q Consensus 173 ~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 250 (548)
+++..+. -|+.. .|..+...+-+.++++.|...|..=.+.- | ..+..|-.|...=-+.|.+-.|..+|++..-
T Consensus 674 lEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c--P-~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 674 LEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC--P-NSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC--C-CCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 8777664 44443 44555566677777777777776544443 3 4677788888888888888888888887653
Q ss_pred --CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCH
Q 038673 251 --RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCL 328 (548)
Q Consensus 251 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 328 (548)
.|...|-..|..-.+.|+.+.|..+..+.++. ++.+...|..-|.+..+.++-
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-------------------------cp~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQE-------------------------CPSSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------CCccchhHHHHHHhccCcccc
Confidence 35677888888888888888888877777663 122334466666666666665
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 329 EEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 329 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
....+.+++-. -|+...-.+-..+-....++.|..-|.+..+.+|++-.+|..+...+.+.|.-++-.++++......
T Consensus 804 Tks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 804 TKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred hHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 66666565553 4666666666777778889999999999999999999999999999999999888888888776533
Q ss_pred CccCCceeEEEcc
Q 038673 409 LKKNPGYSWLEGD 421 (548)
Q Consensus 409 ~~~~~~~s~~~~~ 421 (548)
|.-|..|+.+.
T Consensus 882 --P~hG~~W~avS 892 (913)
T KOG0495|consen 882 --PTHGELWQAVS 892 (913)
T ss_pred --CCCCcHHHHHh
Confidence 44566676443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-10 Score=116.90 Aligned_cols=269 Identities=9% Similarity=-0.001 Sum_probs=203.2
Q ss_pred CcchHHHhccCCCC--CcchHHHH-HHHHHhCCCchHHHHHHHHHHHCCCCCChhhHH--HHHHHhhccCCcHHHHHHHH
Q 038673 2 DSFPRLVFEQVKYK--NPFLWTAL-IRGYILQGHLKDSISLYCSMRREGIGPVSFTLS--ALFKACTEVLDVSLGQQIHA 76 (548)
Q Consensus 2 ~~~A~~~f~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~a~~~~~~~~~a~~~~~ 76 (548)
++.|++.....+.. ++..+-.+ .....+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|.+.++
T Consensus 100 ~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~ 177 (398)
T PRK10747 100 YQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVD 177 (398)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45667777665542 22333333 33347889999999999999863 56654433 23456778899999999999
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCe-----------ehHHHHHHHHHhCCChHHHHHHHccC
Q 038673 77 QTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDV-----------VSWTELIVAYANNGDMESAGGLFNEL 145 (548)
Q Consensus 77 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~~f~~m 145 (548)
.+.+.. |.++.+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++.+
T Consensus 178 ~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 178 KLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 998875 77788899999999999999999998888875221 13444454445556667777777777
Q ss_pred CC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChH
Q 038673 146 PL---KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNV 222 (548)
Q Consensus 146 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 222 (548)
+. .++.....+...+...|+.++|.+++++..+. +||... .++.+....++.+++.+..+...+..+. +.
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~---~~ 328 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD---TP 328 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC---CH
Confidence 63 47778888999999999999999999888774 455421 1233334558899999999988887755 88
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHhcCC--CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 223 VVGSALIDMYSKCGSIDDAYRIFVGMK--QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 223 ~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
....++...+.+.|++++|.+.|+... .|+...+..+...+...|+.++|.+++++-..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 889999999999999999999999887 47878888899999999999999999987654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=122.27 Aligned_cols=279 Identities=13% Similarity=0.076 Sum_probs=190.6
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC------CCeehHHHHHHHHHhCCChHHHHH
Q 038673 67 DVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE------RDVVSWTELIVAYANNGDMESAGG 140 (548)
Q Consensus 67 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~ 140 (548)
+.++|...|+.+.+. ......+...+..+|...+++++|+++|+.+.+ .+...|.+.+.-+-+.=.+.---+
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 356677777774333 334446677777888888888888888887765 366677777766554333322222
Q ss_pred HHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC
Q 038673 141 LFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET-DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPI 219 (548)
Q Consensus 141 ~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~ 219 (548)
-+-.+.+..+.+|-++..+|.-+++.+.|++.|++..+. .| ..++|+.+..-+.....+|.|...|+.++.....
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-- 487 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-- 487 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch--
Confidence 222233446778888888888888888888888877664 44 5667777777777777888888888877665433
Q ss_pred ChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC---ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 038673 220 NNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR---NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLT 296 (548)
Q Consensus 220 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 296 (548)
+-.+|.-|...|.|.++++.|+-.|+++.+- +.+....+...+-+.|+.++|++++++... +.|.
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~k--------- 555 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPK--------- 555 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCC---------
Confidence 6666667788888888888888888877753 445555556667777888888888888766 2322
Q ss_pred HHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038673 297 ACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELE 374 (548)
Q Consensus 297 a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 374 (548)
|+..---.+..+...++.++|+..+++++ +.|+ ...+..+...|.+.|+.+.|..-|.-+.+++
T Consensus 556 --------------n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 556 --------------NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred --------------CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 22222334556666788888888888886 5566 4445555577888888888888888888888
Q ss_pred CCC
Q 038673 375 PDK 377 (548)
Q Consensus 375 p~~ 377 (548)
|.-
T Consensus 622 pkg 624 (638)
T KOG1126|consen 622 PKG 624 (638)
T ss_pred Ccc
Confidence 764
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.9e-10 Score=115.04 Aligned_cols=363 Identities=13% Similarity=0.092 Sum_probs=165.3
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHhh--ccCCcHHHHHHHHHHHHhC-CCCCChhHHHHHHHHHHHcCChHHHHHH
Q 038673 34 KDSISLYCSMRREGIGPVSFTLSALFKACT--EVLDVSLGQQIHAQTILLG-GFTSDLYVGNTMIGMYVKCGFLGCSRKV 110 (548)
Q Consensus 34 ~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~--~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~ 110 (548)
+.|...|....+.. ++|. ...+.+||. ..+++..|..+|..++... ..+||+.+... .++.++|+.+.|...
T Consensus 147 ~~A~a~F~~Vl~~s-p~Ni--l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQS-PDNI--LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHhhC-Ccch--HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHhccchhhHHHH
Confidence 56666666665532 2222 333444443 3456666666666644432 13444443322 445566666666666
Q ss_pred HccCCCCCeehHHHHHHHH---H---hCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC
Q 038673 111 FDEMPERDVVSWTELIVAY---A---NNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGV 181 (548)
Q Consensus 111 ~~~m~~~~~~~~~~li~~~---~---~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 181 (548)
|....+-|+..-++++... . ....+..+..++...- ..|++..+.|...|.-.|+++.+..+...+.....
T Consensus 222 ~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 222 FERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 6666553333222222211 1 1122333333333321 23555666666666666666666666655544321
Q ss_pred C--CCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhh
Q 038673 182 E--TDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSY 256 (548)
Q Consensus 182 ~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~ 256 (548)
. .-...|..+..++-..|++++|.++|.+..+.... ..+..+.-|..+|.+.|+++.|...|+.+.+ .+..+.
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d--~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND--NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC--CccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 1 11223555666666666666666666555554433 1244444556666666666666666665543 223344
Q ss_pred HHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHhhHHHH------------HHHHhhcCC--ccCCCCcCHHHHHHH
Q 038673 257 SSMILGFAMHG----RAHAAIQLFGDMVKTETKPNGVTFIGV------------LTACSHVGL--KCYGVSPSTDHYACM 318 (548)
Q Consensus 257 ~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~l------------l~a~~~~~~--~~~~~~p~~~~~~~l 318 (548)
..+...|+..+ ..+.|..++.+..+. ..-|...|..+ +.++.++.. ...+-.+.++..|.+
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 44444444443 233444444433332 11122222222 222222221 222333455556666
Q ss_pred HHHHHHcCCHHHHHHHHHhCC------CCCCh-----hHHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 038673 319 VDLLGRAGCLEEALKMVEKMP------VEPNG-----GVWGALL-GACQIHRNPEIAQIAANHLFELEPDKIGNYIILSN 386 (548)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~------~~p~~-----~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 386 (548)
.......|.+++|...|.+.. ..+|. .|..-.+ ...-..++.+.|.+.+..+++..|.....|..|+.
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhH
Confidence 666666666666666665442 11222 1111111 22223334555555555555555544444444443
Q ss_pred HHHHcCCchHHHHHHHHH
Q 038673 387 IYASAGMWDDVSRVRRLL 404 (548)
Q Consensus 387 ~~~~~g~~~~a~~~~~~m 404 (548)
+.-..+...+|...++..
T Consensus 539 ma~~k~~~~ea~~~lk~~ 556 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDA 556 (1018)
T ss_pred HHHhccCcHHHHHHHHHH
Confidence 333334444444444443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-10 Score=116.29 Aligned_cols=277 Identities=13% Similarity=0.011 Sum_probs=157.8
Q ss_pred HcCChHHHHHHHccCCC--CCee-hHHHHHHHHHhCCChHHHHHHHccCCC--CC--hhHHHHHHHHHHHCCChhHHHHH
Q 038673 100 KCGFLGCSRKVFDEMPE--RDVV-SWTELIVAYANNGDMESAGGLFNELPL--KD--KVAWTAMVTGYVQNAKPREAIEY 172 (548)
Q Consensus 100 ~~g~~~~A~~~~~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~--~~--~~~~~~li~~~~~~g~~~~A~~l 172 (548)
..|+++.|.+.+.+..+ |+.. .+-.......+.|+.+.|.+.|.+..+ |+ ....-.....+.+.|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34666666666655443 2221 222333445555666666666655421 22 22333345566667777777777
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhH-------HHHHHHHHhcCCCHHHHHHHH
Q 038673 173 FERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVV-------GSALIDMYSKCGSIDDAYRIF 245 (548)
Q Consensus 173 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-------~~~li~~y~~~g~~~~A~~~~ 245 (548)
++++.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+ .... +..++..-......+...+.+
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~--~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD--DEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77776653 2244456666666777777777777777777665442 2211 111122212233345555556
Q ss_pred hcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH-HHHHHHhhcCCccCCCCcCHHHHHHHHHH
Q 038673 246 VGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFI-GVLTACSHVGLKCYGVSPSTDHYACMVDL 321 (548)
Q Consensus 246 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~~~~~~~~~p~~~~~~~li~~ 321 (548)
...++ .++..+..+...+...|+.++|.+++++..+. .||..... .++. .-.
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~----------------------~~~ 308 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCL----------------------PIP 308 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHH----------------------Hhh
Confidence 55553 36677777777777888888888888777773 44444210 0110 011
Q ss_pred HHHcCCHHHHHHHHHhCC-CCCCh---hHHHHHHHHHHhcCCHHHHHHHHH--HHhhcCCCCchhHHHHHHHHHHcCCch
Q 038673 322 LGRAGCLEEALKMVEKMP-VEPNG---GVWGALLGACQIHRNPEIAQIAAN--HLFELEPDKIGNYIILSNIYASAGMWD 395 (548)
Q Consensus 322 ~~~~g~~~~A~~~~~~m~-~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~ 395 (548)
....++.+.+.+.+++.. ..|+. ....++-..|.+.|++++|.+.|+ ...+..|++. .+..++..+.+.|+.+
T Consensus 309 ~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~ 387 (409)
T TIGR00540 309 RLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKA 387 (409)
T ss_pred hcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHH
Confidence 122355566666665542 34442 445566677778888888888888 4555667655 4667888888888888
Q ss_pred HHHHHHHHH
Q 038673 396 DVSRVRRLL 404 (548)
Q Consensus 396 ~a~~~~~~m 404 (548)
+|.+++++-
T Consensus 388 ~A~~~~~~~ 396 (409)
T TIGR00540 388 EAAAMRQDS 396 (409)
T ss_pred HHHHHHHHH
Confidence 888877764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-10 Score=105.83 Aligned_cols=245 Identities=11% Similarity=0.040 Sum_probs=162.2
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCHhhHH--HHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCC
Q 038673 159 GYVQNAKPREAIEYFERMQYAGVETDYVTLV--GVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCG 236 (548)
Q Consensus 159 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g 236 (548)
-|.++|+++.|+++++-+.+..-+.-...-+ .++.......++..|.++-+..+...-- +......-.+.-...|
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry---n~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY---NAAALTNKGNIAFANG 504 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc---CHHHhhcCCceeeecC
Confidence 3567777777777776665543221111111 1222222234566666666655543322 3333333344445679
Q ss_pred CHHHHHHHHhcCCCCChhhhHHHHH---HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC---------c
Q 038673 237 SIDDAYRIFVGMKQRNVFSYSSMIL---GFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL---------K 304 (548)
Q Consensus 237 ~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------~ 304 (548)
++++|.+.+.+....|...-.+|.. .+-..|+.++|++.|-++..- +.-+...+..+.+-|..... .
T Consensus 505 d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 9999999999998877655444433 466789999999999877542 23334444444444443332 2
Q ss_pred cCC-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHh-CC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 038673 305 CYG-VSPSTDHYACMVDLLGRAGCLEEALKMVEK-MP-VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNY 381 (548)
Q Consensus 305 ~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 381 (548)
... ++-|+...+.|.++|-+.|+-.+|.+.+-+ .. +..+..+..-|...|....-.++++..|++..-+.|+....-
T Consensus 584 ~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwq 663 (840)
T KOG2003|consen 584 ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQ 663 (840)
T ss_pred hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHH
Confidence 223 444788899999999999999999987644 34 445677777777778888888999999999988999877566
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 382 IILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 382 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
..++.++-+.|+++.|.++++....+
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 66677778899999999999988643
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-10 Score=117.53 Aligned_cols=376 Identities=14% Similarity=0.088 Sum_probs=246.7
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHH
Q 038673 14 YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNT 93 (548)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 93 (548)
.||-+||..+|..|+..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.++ .|...+|+.
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~aDtyt~ 88 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPLADTYTN 88 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------CCchhHHHH
Confidence 578899999999999999999988 9999988887778889999999988888876554 678889999
Q ss_pred HHHHHHHcCChHH---HHHHHccCCC-------------------------CCeehHHHHHHHHHhCCChHHHHHHHccC
Q 038673 94 MIGMYVKCGFLGC---SRKVFDEMPE-------------------------RDVVSWTELIVAYANNGDMESAGGLFNEL 145 (548)
Q Consensus 94 li~~~~~~g~~~~---A~~~~~~m~~-------------------------~~~~~~~~li~~~~~~g~~~~A~~~f~~m 145 (548)
|..+|...||+.. .++.+..+.. ||.. ..+.-....|-++.+.+++..+
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999998654 3332222211 1111 1222233334444444443222
Q ss_pred C----------------------------------CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 038673 146 P----------------------------------LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGV 191 (548)
Q Consensus 146 ~----------------------------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 191 (548)
+ .++..+|.+++..-..+|+.+.|..++.+|++.|++.+.+-|..+
T Consensus 166 Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 166 PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred CcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 1 257778889999999999999999999999999999988888877
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHH------------------------HHHhc
Q 038673 192 ISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY------------------------RIFVG 247 (548)
Q Consensus 192 l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~------------------------~~~~~ 247 (548)
+-+ .++...+..+.+-|...|+.| +..|+.-.+-...+.|....+. +.++.
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~gv~p--~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~ 320 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEKGVQP--GSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQ 320 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHhcCCC--CcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHH
Confidence 765 788888889999999999996 7777766655555543322111 11110
Q ss_pred C---------CC-------CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC-HhhHHHHHHHHhhcC------
Q 038673 248 M---------KQ-------RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT--ETKPN-GVTFIGVLTACSHVG------ 302 (548)
Q Consensus 248 ~---------~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~-~~t~~~ll~a~~~~~------ 302 (548)
- ++ ....+|...+. ...+|..++.+++...|..- ...|+ ...|..++.-|.+.-
T Consensus 321 nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~ 399 (1088)
T KOG4318|consen 321 NLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICS 399 (1088)
T ss_pred HHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHH
Confidence 0 00 11123333332 23356655555555544321 11121 111222221111110
Q ss_pred --------C-----------------------------------ccCCC-------------------------------
Q 038673 303 --------L-----------------------------------KCYGV------------------------------- 308 (548)
Q Consensus 303 --------~-----------------------------------~~~~~------------------------------- 308 (548)
. ...-.
T Consensus 400 ~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l 479 (1088)
T KOG4318|consen 400 RIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKIL 479 (1088)
T ss_pred HHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000
Q ss_pred --------CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh---
Q 038673 309 --------SPSTDHYACMVDLLGRAGCLEEALKMVEKMP-----VEPNGGVWGALLGACQIHRNPEIAQIAANHLFE--- 372 (548)
Q Consensus 309 --------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--- 372 (548)
..-...|..||+.+......++|..+.++.. ..-|..-+..+.+...+++....+..+.+.+.+
T Consensus 480 ~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~ 559 (1088)
T KOG4318|consen 480 CDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAE 559 (1088)
T ss_pred HHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhh
Confidence 0012447788888888888999998888885 234455577778888888888889888888877
Q ss_pred cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 038673 373 LEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKK 411 (548)
Q Consensus 373 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 411 (548)
..|.......-+.+..+..|+.+...++++-+...|+.-
T Consensus 560 n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 560 NEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred CCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 334445566677788888999999999999888888865
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-09 Score=103.85 Aligned_cols=303 Identities=14% Similarity=0.095 Sum_probs=212.6
Q ss_pred hCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCC-CChhHHHHHHHHHHHcCChHHH
Q 038673 29 LQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFT-SDLYVGNTMIGMYVKCGFLGCS 107 (548)
Q Consensus 29 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A 107 (548)
.....++++.-.+.....|++-+...-+....+.-...|++.|..+|+.+.+..++. .|..+|+.++-.--.+..+.--
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 334556666666666666654444333333334445677788888888877765332 2456666665433222222221
Q ss_pred HHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC
Q 038673 108 RKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPL---KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD 184 (548)
Q Consensus 108 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 184 (548)
....-.+.+--+.|...+.+-|.-.++.++|...|++..+ +....|+.|..-|....+...|.+-|+...+-. +.|
T Consensus 319 A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~D 397 (559)
T KOG1155|consen 319 AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRD 397 (559)
T ss_pred HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chh
Confidence 1122223333455666777788888999999999998763 356789999999999999999999999998864 558
Q ss_pred HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHH
Q 038673 185 YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMIL 261 (548)
Q Consensus 185 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 261 (548)
-..|-.+..+|.-.+...-|.-+|+++.+..+ .|..+|.+|.+.|.+.+++++|.+.|.+... .+...+..+..
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP---nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKP---NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC---CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 88999999999999999999999999988764 4999999999999999999999999998764 34478999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHc----CCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 038673 262 GFAMHGRAHAAIQLFGDMVKT----ETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEK 337 (548)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 337 (548)
.|-+.++.++|...|++-++. |..-+ .| ...-.-|..-+.+.+++++|......
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~~eg~~~~-~t---------------------~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSELEGEIDD-ET---------------------IKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcccch-HH---------------------HHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 999999999999998876652 22211 11 12223356667788888888665443
Q ss_pred CCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038673 338 MPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFE 372 (548)
Q Consensus 338 m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 372 (548)
.. .. ....++|..+++++.+
T Consensus 533 ~~-------------~~--~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 533 VL-------------KG--ETECEEAKALLREIRK 552 (559)
T ss_pred Hh-------------cC--CchHHHHHHHHHHHHH
Confidence 32 11 2235777777777666
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.3e-11 Score=121.23 Aligned_cols=259 Identities=17% Similarity=0.183 Sum_probs=185.9
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 038673 171 EYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ 250 (548)
Q Consensus 171 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 250 (548)
.++-.+...|+.|+.+||.+++.-|+..|+.+.|- +|..|.-.... .+..+++.++......++.+.+. +
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLp--v~e~vf~~lv~sh~~And~Enpk-------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLP--VREGVFRGLVASHKEANDAENPK-------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccccc--ccchhHHHHHhcccccccccCCC-------C
Confidence 45677888999999999999999999999999999 99999877766 68999999999999999888776 7
Q ss_pred CChhhhHHHHHHHHhcCCHHHHHHHHHH-HHH-------cCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHH
Q 038673 251 RNVFSYSSMILGFAMHGRAHAAIQLFGD-MVK-------TETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLL 322 (548)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~l~~~-m~~-------~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~ 322 (548)
|...+|+.|..+|..+|+... ++..++ |.. .|+..-..-|...+++| -+.-||. ...+..+
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~-------p~~lpda---~n~illl 149 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCC-------PHSLPDA---ENAILLL 149 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccC-------cccchhH---HHHHHHH
Confidence 888999999999999999765 222222 221 22222222222222222 1233443 3456667
Q ss_pred HHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 038673 323 GRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHR-NPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVR 401 (548)
Q Consensus 323 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 401 (548)
.-.|.++.+++++..+|...-..++..++.-+.... .+++-....+...+ . .++.+|..+...-..+|+.+.|..++
T Consensus 150 v~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~-~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 150 VLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-A-PTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-C-CChHHHHHHHHHHHhcCchhhHHHHH
Confidence 778999999999999983222112222354444433 34444444444444 3 45669999999999999999999999
Q ss_pred HHHHhCCCccCCceeEEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCCccccccC
Q 038673 402 RLLKMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDV 468 (548)
Q Consensus 402 ~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~ 468 (548)
..|+++|++..+.+.|.++- |.. ....+..+..-|++.|+.|+.++...-+
T Consensus 228 ~emke~gfpir~HyFwpLl~---------g~~-------~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLL---------GIN-------AAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred HHHHHcCCCcccccchhhhh---------cCc-------cchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 99999999999999998765 321 1223356788999999999988776544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-12 Score=86.98 Aligned_cols=50 Identities=26% Similarity=0.573 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 038673 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTE 64 (548)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 64 (548)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999864
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.5e-12 Score=85.94 Aligned_cols=50 Identities=26% Similarity=0.531 Sum_probs=48.0
Q ss_pred CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhh
Q 038673 251 RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSH 300 (548)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 300 (548)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-09 Score=110.17 Aligned_cols=271 Identities=10% Similarity=-0.004 Sum_probs=196.2
Q ss_pred CcchHHHhccCCC--CCcc-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh--hHHHHHHHhhccCCcHHHHHHHH
Q 038673 2 DSFPRLVFEQVKY--KNPF-LWTALIRGYILQGHLKDSISLYCSMRREGIGPVSF--TLSALFKACTEVLDVSLGQQIHA 76 (548)
Q Consensus 2 ~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~a~~~~~~~~~a~~~~~ 76 (548)
++.|++.+...++ |+.. .+-.......+.|+++.|.+.|.+..+. .|+.. .-..........|+++.|...++
T Consensus 100 ~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~ 177 (409)
T TIGR00540 100 YAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARHGVD 177 (409)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4566777665553 3322 2333345677789999999999998764 35543 33334667788899999999999
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCC---CeehH--------HHHHHHHHhCCChHHHHHHHccC
Q 038673 77 QTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPER---DVVSW--------TELIVAYANNGDMESAGGLFNEL 145 (548)
Q Consensus 77 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~--------~~li~~~~~~g~~~~A~~~f~~m 145 (548)
.+.+.. |.+..+...+..+|...|++++|.+.+..+.+. +...+ ..++..-......+...+.....
T Consensus 178 ~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~ 255 (409)
T TIGR00540 178 KLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ 255 (409)
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence 999886 677888999999999999999999999888753 22222 11121112233344555556666
Q ss_pred CC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHH-HHHHH--HHccCChhHHHHHHHHHHHcCCCCC
Q 038673 146 PL---KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLV-GVISA--CAQLGVIKYANWVCEIAEGSGFGPI 219 (548)
Q Consensus 146 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~--~~~~g~~~~a~~~~~~~~~~~~~p~ 219 (548)
+. .+...+..+...+...|+.++|.+++++..+. .||..... .++.. ....++.+.+.+.++...+..+.
T Consensus 256 p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-- 331 (409)
T TIGR00540 256 PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-- 331 (409)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC--
Confidence 53 47888999999999999999999999999876 34443210 12222 23457778888888888877654
Q ss_pred ChH--hHHHHHHHHHhcCCCHHHHHHHHhc--CC--CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 220 NNV--VVGSALIDMYSKCGSIDDAYRIFVG--MK--QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 220 ~~~--~~~~~li~~y~~~g~~~~A~~~~~~--~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
++ ....++...+.+.|++++|.+.|+. .. .|+...+..+...+.+.|+.++|.++|++...
T Consensus 332 -~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 -KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66 7788999999999999999999993 42 58888888999999999999999999998654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.3e-08 Score=97.59 Aligned_cols=267 Identities=10% Similarity=0.032 Sum_probs=204.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 038673 121 SWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQ 197 (548)
Q Consensus 121 ~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 197 (548)
||+.-...|.+.+.++-|..+|.... ..+...|...+..--..|..++-..+|++.... ++-....+.......-.
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWK 596 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHh
Confidence 45555555666666666666665544 335667777777767778888889999888775 23333344444555677
Q ss_pred cCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--CChhhhHHHHHHHHhcCCHHHHHHH
Q 038673 198 LGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--RNVFSYSSMILGFAMHGRAHAAIQL 275 (548)
Q Consensus 198 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l 275 (548)
.|++..|..++..+.+.... +..+|.+-+..-.....++.|..+|.+... ++...|.--+..--..++.++|+++
T Consensus 597 agdv~~ar~il~~af~~~pn---seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPN---SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCC---cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 79999999999999888755 888999999999999999999999988763 6667777777777778999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHH
Q 038673 276 FGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKM-PVEPN-GGVWGALLGA 353 (548)
Q Consensus 276 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~ 353 (548)
+++.++ .-|+.. ..|..+.+.+-+.++++.|.+.|..- +.-|+ ...|-.|...
T Consensus 674 lEe~lk--~fp~f~-----------------------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 674 LEEALK--SFPDFH-----------------------KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred HHHHHH--hCCchH-----------------------HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 988887 455544 44778888899999999998888665 35566 5567666677
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEE
Q 038673 354 CQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSWL 418 (548)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~ 418 (548)
--+.|++-.|..++++..-.+|.+...|...+.+-.+.|+.+.|..+..+.... -|..|.-|.
T Consensus 729 eEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWa 791 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWA 791 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHH
Confidence 788889999999999999999999999999999999999999999887766543 244455554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.6e-09 Score=97.94 Aligned_cols=396 Identities=11% Similarity=0.072 Sum_probs=243.6
Q ss_pred CcchHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh-hHHHHHHHhhccCCcHHHHHHHHH
Q 038673 2 DSFPRLVFEQVK---YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSF-TLSALFKACTEVLDVSLGQQIHAQ 77 (548)
Q Consensus 2 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~ 77 (548)
+..|+.+|++.. .++...|-.-+..=.++.....|..+|++.... -|-.. .|---+..=-..|++..|+++|+.
T Consensus 89 ~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 89 IQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 456888887655 466777888888888888999999999988863 34322 222222233456888999999988
Q ss_pred HHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCC--CCCeehHHHHHHHHHhCCChHHHHHHHccCCCC------C
Q 038673 78 TILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMP--ERDVVSWTELIVAYANNGDMESAGGLFNELPLK------D 149 (548)
Q Consensus 78 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~------~ 149 (548)
-++ ..|+...|++.|+.=.+...++.|+.+++... .|++.+|--...-=.+.|....|..+|+...+. +
T Consensus 167 W~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 167 WME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred HHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 776 68999999999999889999999999998865 588888888888888889888888888765422 2
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCCh---hHHHH-----HHHHHHHcCCCCC
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD--YVTLVGVISACAQLGVI---KYANW-----VCEIAEGSGFGPI 219 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~---~~a~~-----~~~~~~~~~~~p~ 219 (548)
...+++...--.++..++.|.-+|+-.... ++-+ ...|......=-+-|+. +.+.- -++.+++.+ |
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n--p- 319 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN--P- 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC--C-
Confidence 334555555555667778888887766653 2323 22333333332233433 33221 223344444 3
Q ss_pred ChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--CCh---hhhHHHHH--------HHHhcCCHHHHHHHHHHHHHcCCCC
Q 038673 220 NNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--RNV---FSYSSMIL--------GFAMHGRAHAAIQLFGDMVKTETKP 286 (548)
Q Consensus 220 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~---~~~~~li~--------~~~~~g~~~~A~~l~~~m~~~g~~p 286 (548)
.|-.+|--.+..-...|+.+...++|++... |.. ..|.-.|- .=....+.+.+.++|+..++. ++-
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH 398 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH 398 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence 4777888888888888999999999988763 211 12322221 112457888888899888873 444
Q ss_pred CHhhHHHHHHHHhhcCC-------------ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHH
Q 038673 287 NGVTFIGVLTACSHVGL-------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALL 351 (548)
Q Consensus 287 ~~~t~~~ll~a~~~~~~-------------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll 351 (548)
...||.-+=-.+++-.. ...|..|...++...|..-.+.+.++....++++.. ..| |..+|.-..
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA 478 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence 45666544333322110 344555555555555555555555555555555542 333 244555555
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCC--chhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 352 GACQIHRNPEIAQIAANHLFELEPDK--IGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
..-...|+.+.|..+|+.++.....+ ...+...+..-...|.++.|..+++++.++
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 55555555566655555555411111 113334444445555555666555555543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.2e-09 Score=97.60 Aligned_cols=299 Identities=14% Similarity=0.117 Sum_probs=186.8
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHH-HHHHHHHHHC
Q 038673 85 TSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAW-TAMVTGYVQN 163 (548)
Q Consensus 85 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~-~~li~~~~~~ 163 (548)
..|.+.+-.....+-+.|..+.|.+.|-.....-+..|.+.+...--..+.+.+..+-...+..+...- --+..+|-..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 445444444444566777888888888777665555666655554444455554444434433221111 1233455566
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHH
Q 038673 164 AKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYR 243 (548)
Q Consensus 164 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~ 243 (548)
.+.++++.-.......|++-+...-+....+.-...++++|..+|+.+.+..+--..+..+|+.++-.-..+.++.---+
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 67788888777787777665555444455555677789999999999888753323466777776655444434333222
Q ss_pred HHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHH
Q 038673 244 IFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLG 323 (548)
Q Consensus 244 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~ 323 (548)
..-.+.+--+.|...+.+-|...++.++|+..|++.++ +.|.. ...|+.|..-|.
T Consensus 321 ~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~-----------------------~~aWTLmGHEyv 375 (559)
T KOG1155|consen 321 NVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKY-----------------------LSAWTLMGHEYV 375 (559)
T ss_pred HHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcch-----------------------hHHHHHhhHHHH
Confidence 22333333455666667777777788888888888776 33332 234666667777
Q ss_pred HcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 038673 324 RAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVR 401 (548)
Q Consensus 324 ~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 401 (548)
...+...|.+-++... +.| |-..|-.|-.+|...+...-|.-.|+++.++.|+++..+..|+++|.+.++.++|++.+
T Consensus 376 EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 376 EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHH
Confidence 7777777777776653 333 56677777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhCC
Q 038673 402 RLLKMTG 408 (548)
Q Consensus 402 ~~m~~~g 408 (548)
+.....|
T Consensus 456 krai~~~ 462 (559)
T KOG1155|consen 456 KRAILLG 462 (559)
T ss_pred HHHHhcc
Confidence 6665443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-08 Score=92.88 Aligned_cols=217 Identities=16% Similarity=0.101 Sum_probs=125.4
Q ss_pred CCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCCh--hHHHHHHHHHHHcCChHHHH
Q 038673 31 GHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDL--YVGNTMIGMYVKCGFLGCSR 108 (548)
Q Consensus 31 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~ 108 (548)
+++++|+++|-+|.+.. +-+..+--+|.+.+.+.|..+.|..+|..++++.+++.+. .....
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~q--------------- 112 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQ--------------- 112 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHH---------------
Confidence 45566666666665521 1122333345555555666666666666555432111111 11122
Q ss_pred HHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH
Q 038673 109 KVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLK---DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185 (548)
Q Consensus 109 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 185 (548)
|..-|...|-+|.|+++|..+.+. -......|+..|-+..+|++|++.-+++.+.+-.+..
T Consensus 113 ----------------L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~ 176 (389)
T COG2956 113 ----------------LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR 176 (389)
T ss_pred ----------------HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch
Confidence 333344444455555555554432 1334556677777777777777777777665544432
Q ss_pred h----hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCCh----hhhH
Q 038673 186 V----TLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNV----FSYS 257 (548)
Q Consensus 186 ~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~----~~~~ 257 (548)
+ .|.-+...+....+++.|...++.+.+.+.. .+.+--.+.+.+...|+++.|.+.++.+.+.|+ .+..
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~---cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKK---CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc---ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 2 2444555555556777777777777776644 666666777777777777777777777776554 2455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 258 SMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 258 ~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
.|..+|.+.|+.++.+..+.++.+.
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6666777777777777777777664
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.7e-08 Score=93.06 Aligned_cols=117 Identities=11% Similarity=0.061 Sum_probs=67.5
Q ss_pred CCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCC----CeehHHHHHHHHHhCCChHHHHHH
Q 038673 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPER----DVVSWTELIVAYANNGDMESAGGL 141 (548)
Q Consensus 66 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~ 141 (548)
|++..|.+......+.+ +-....|..-+.+--..|+.+.+-.++.+..++ +....-+........|+++.|..-
T Consensus 98 G~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred CcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 55555555555544433 222223333334444555555555555554432 222333444444555555555444
Q ss_pred H---ccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC
Q 038673 142 F---NELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD 184 (548)
Q Consensus 142 f---~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 184 (548)
. .+|...++........+|.+.|++.+...++..|.+.|+--|
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~ 221 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSD 221 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCCh
Confidence 3 345566788888888999999999999999999988876544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-09 Score=98.76 Aligned_cols=191 Identities=14% Similarity=0.058 Sum_probs=112.3
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhc
Q 038673 190 GVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMH 266 (548)
Q Consensus 190 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 266 (548)
.+...+...|++++|...++.+.+... .+...+..+...|...|++++|.+.|++..+ .+...+..+...+...
T Consensus 36 ~la~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHDP---DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 333344444444444444444443321 2344444445555555555555555544432 2233445555555666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-h
Q 038673 267 GRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-G 344 (548)
Q Consensus 267 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~ 344 (548)
|++++|.+.|++.......|. ....+..+...+...|++++|.+.+++.. ..|+ .
T Consensus 113 g~~~~A~~~~~~~~~~~~~~~-----------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 169 (234)
T TIGR02521 113 GKYEQAMQQFEQAIEDPLYPQ-----------------------PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRP 169 (234)
T ss_pred ccHHHHHHHHHHHHhcccccc-----------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh
Confidence 666666666666654211111 12334555666777777777777776653 3333 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 345 GVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 345 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
..+..+...+...|+++.|...+++..+..|.++..+..++..+...|+.++|..+.+.+.+
T Consensus 170 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 170 ESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 56666777777888888888888888877777777777788888888888888887776653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.5e-09 Score=93.52 Aligned_cols=207 Identities=14% Similarity=0.039 Sum_probs=121.1
Q ss_pred CcchHHHhccCCCCCcchHH---HHHHHHHhCCCchHHHHHHHHHHHCCCCCChh------hHHHHHHHhhccCCcHHHH
Q 038673 2 DSFPRLVFEQVKYKNPFLWT---ALIRGYILQGHLKDSISLYCSMRREGIGPVSF------TLSALFKACTEVLDVSLGQ 72 (548)
Q Consensus 2 ~~~A~~~f~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~ll~a~~~~~~~~~a~ 72 (548)
.+.|..+|-+|.+-|+.++. +|-.-|-+.|..+.|+.+-+.+.++ ||.. ..-.|.+-|...|-++.|.
T Consensus 51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 57899999999887776654 5667788899999999999999875 5432 2344556677788888999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHH--------HHHHHHhCCChHHHHHHHcc
Q 038673 73 QIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTE--------LIVAYANNGDMESAGGLFNE 144 (548)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--------li~~~~~~g~~~~A~~~f~~ 144 (548)
.+|..+...+ ..-......|+..|-...++++|.++-+++..-+...++. +...+....+++.|..++.+
T Consensus 128 ~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 128 DIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9998887765 4455667778888888888888887766554433222222 22223333444444444444
Q ss_pred CCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 038673 145 LPLK---DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEG 213 (548)
Q Consensus 145 m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 213 (548)
..+. .+..--.+.+.+...|+++.|.+.++...+.+..--..+...+..+|...|+.+++...+..+.+
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3321 12222223334444444444444444444432222222333444444444444444444444443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.2e-09 Score=95.72 Aligned_cols=197 Identities=15% Similarity=0.111 Sum_probs=148.4
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
...+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.... +...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN---NGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHH
Confidence 4567777888888888888888888877653 334556677777888888888888888888876644 667778888
Q ss_pred HHHhcCCCHHHHHHHHhcCCC-----CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCc
Q 038673 230 DMYSKCGSIDDAYRIFVGMKQ-----RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLK 304 (548)
Q Consensus 230 ~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 304 (548)
..|...|++++|.+.|++..+ .....+..+...+...|++++|...+.+.... .|+
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----------------- 167 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQ----------------- 167 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcC-----------------
Confidence 888888999999888888753 12345667777888889999999999888763 333
Q ss_pred cCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038673 305 CYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-V-EPNGGVWGALLGACQIHRNPEIAQIAANHLFELEP 375 (548)
Q Consensus 305 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 375 (548)
+...+..+...+...|++++|.+.+++.. . ..+...+..+...+...|+.+.|....+.+.+..|
T Consensus 168 ------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 168 ------RPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred ------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 23456677888888999999998888763 2 23456666677788888999999888887766543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-09 Score=99.26 Aligned_cols=224 Identities=13% Similarity=0.060 Sum_probs=191.4
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHh
Q 038673 154 TAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYS 233 (548)
Q Consensus 154 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~ 233 (548)
+.|.++|.+.|.+.+|.+.|+.-... .|-..||..+-.+|.+..+.+.|..++.+-++.-+. ++....-....+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~---~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF---DVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc---hhhhhhhhHHHHH
Confidence 46888999999999999999988776 566778999999999999999999999998877644 7777788889999
Q ss_pred cCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCc
Q 038673 234 KCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSP 310 (548)
Q Consensus 234 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p 310 (548)
..++.++|.++++...+ .|+.+.-.+..+|.-.++++.|+..|+++++.|+.
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~------------------------- 356 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ------------------------- 356 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-------------------------
Confidence 99999999999998875 45666667778899999999999999999998765
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMP---VEPN--GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
+++.|+.+.-.+.-.+++|-++.-|++.. ..|+ ..+|-.+-......||...|.+.|+..+..+|++..+++.|+
T Consensus 357 speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLa 436 (478)
T KOG1129|consen 357 SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLA 436 (478)
T ss_pred ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHH
Confidence 34557777777777888888888887663 2355 667888888888899999999999999999999999999999
Q ss_pred HHHHHcCCchHHHHHHHHHHhC
Q 038673 386 NIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 386 ~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
-.-.+.|++++|..+++.....
T Consensus 437 vL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 437 VLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHhhcCchHHHHHHHHHhhhh
Confidence 9999999999999999887653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.7e-08 Score=90.95 Aligned_cols=252 Identities=11% Similarity=0.029 Sum_probs=159.9
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHH
Q 038673 27 YILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGC 106 (548)
Q Consensus 27 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 106 (548)
--+.|+.+.|-..+.+..+..-.++...+-+..+.....|+...|..-.+.+.+.+ +.++.+......+|.+.|++..
T Consensus 128 A~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 128 AQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT--PRHPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred HHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC--cCChHHHHHHHHHHHHhccHHH
Confidence 33445555555555555442112233333333444445555555555555555554 4455555555555555555555
Q ss_pred HHHHHccCCCCC-----------eehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHH
Q 038673 107 SRKVFDEMPERD-----------VVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEY 172 (548)
Q Consensus 107 A~~~~~~m~~~~-----------~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l 172 (548)
...++..+.+.. ..+|+.+++-....+..+.-...++..+ ..++..-.+++.-+.+.|+.++|.++
T Consensus 206 ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~ 285 (400)
T COG3071 206 LLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEI 285 (400)
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHH
Confidence 555555554311 1244555554444444444444455554 22455666777778888888889888
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC--C
Q 038673 173 FERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK--Q 250 (548)
Q Consensus 173 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~ 250 (548)
..+-.+.+..|+.. .+-.+.+.++.+.-.+..+.-.+.... ++..+.+|...|.+.+.+.+|...|+... +
T Consensus 286 i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~---~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 286 IEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPE---DPLLLSTLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred HHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 88888877666622 223345667777777776666665544 77889999999999999999999999776 4
Q ss_pred CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 038673 251 RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPN 287 (548)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 287 (548)
++..+|+-+..++.+.|+..+|.+.+++....-..|+
T Consensus 359 ~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 359 PSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 7889999999999999999999999988775444444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.8e-09 Score=108.49 Aligned_cols=237 Identities=12% Similarity=0.001 Sum_probs=125.2
Q ss_pred chHHHHHHHHHHHCCCCCCh-hhHHHHHHHhh---------ccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 038673 33 LKDSISLYCSMRREGIGPVS-FTLSALFKACT---------EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCG 102 (548)
Q Consensus 33 ~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 102 (548)
.++|++.|++..+. .|+. ..|..+..++. ..+++++|...++.+++.. +.+...+..+..++...|
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcc
Confidence 45666677666653 4432 33333333222 1233566666666666654 555666666666666667
Q ss_pred ChHHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHHHHHHccCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHH
Q 038673 103 FLGCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESAGGLFNELPL--K-DKVAWTAMVTGYVQNAKPREAIEYFERM 176 (548)
Q Consensus 103 ~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 176 (548)
++++|...|++..+ | +...|..+...+...|++++|...|++... | +...+..++..+...|++++|+..+++.
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 77777777766554 3 234555666666666676666666666542 2 2222233333455566666666666665
Q ss_pred HHCCCCCC-HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----
Q 038673 177 QYAGVETD-YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ----- 250 (548)
Q Consensus 177 ~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----- 250 (548)
.... .|+ ...+..+..++...|+.++|...+..+..... .+....+.+...|...| +.|...++.+.+
T Consensus 433 l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 433 RSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI---TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc---hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 5432 232 22344455555666666666666666544432 24455555555666655 355555554432
Q ss_pred CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 251 RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
+.-..+ +-..|+-.|+.+.+..+ +++.+.
T Consensus 507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 111122 23334445555555444 555553
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=7e-09 Score=108.39 Aligned_cols=257 Identities=12% Similarity=-0.030 Sum_probs=171.6
Q ss_pred CeehHHHHHHHHHh-----CCChHHHHHHHccCCCC---ChhHHHHHHHHHHH---------CCChhHHHHHHHHHHHCC
Q 038673 118 DVVSWTELIVAYAN-----NGDMESAGGLFNELPLK---DKVAWTAMVTGYVQ---------NAKPREAIEYFERMQYAG 180 (548)
Q Consensus 118 ~~~~~~~li~~~~~-----~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g 180 (548)
+...|...+.+-.. .+.+++|..+|++.... +...|..+..+|.. .+++++|...+++..+..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 44455555555321 23467888888877633 34566666554432 244788898888887753
Q ss_pred CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--CCh-hhhH
Q 038673 181 VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--RNV-FSYS 257 (548)
Q Consensus 181 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~~~ 257 (548)
+-+...+..+...+...|++++|...++++.+.++. +...+..+...|...|++++|...+++..+ |+. ..+.
T Consensus 335 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~ 410 (553)
T PRK12370 335 -HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI---SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI 410 (553)
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence 335566777777778888999999999998887754 777888888889999999999999988764 322 2333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 038673 258 SMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEK 337 (548)
Q Consensus 258 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 337 (548)
.++..+...|++++|+..+++.... ..|+. +..+..+..+|...|++++|...+++
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~-~~p~~-----------------------~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQ-HLQDN-----------------------PILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHh-ccccC-----------------------HHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4444566688889999998887763 12332 23456677788889999999999988
Q ss_pred CC-CCCChhH-HHHHHHHHHhcCCHHHHHHHHHHHhh---cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 338 MP-VEPNGGV-WGALLGACQIHRNPEIAQIAANHLFE---LEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 338 m~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
+. ..|+... ++.+...+...| +.|...++.+.+ ..|.++ ..+...|+-.|+-+.+..+ +++.+.|
T Consensus 467 ~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 467 ISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNP---GLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCc---hHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 74 4455333 334445556666 477777777766 334333 2356667777777777666 6666544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-08 Score=101.99 Aligned_cols=234 Identities=17% Similarity=0.143 Sum_probs=176.9
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHC-----C-CCCCHhhH-HHHHHHHHccCChhHHHHHHHHHHHc-----CCC-
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQYA-----G-VETDYVTL-VGVISACAQLGVIKYANWVCEIAEGS-----GFG- 217 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~- 217 (548)
.+...+...|...|++++|+.+++...+. | ..|...+. ..+...|...+++.+|..+|+.+... |..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555889999999999999999887653 2 23444433 34667788999999999999988642 222
Q ss_pred CCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC----------CCh-hhhHHHHHHHHhcCCHHHHHHHHHHHHHc---C
Q 038673 218 PINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ----------RNV-FSYSSMILGFAMHGRAHAAIQLFGDMVKT---E 283 (548)
Q Consensus 218 p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g 283 (548)
| .-..+++.|...|.+.|++++|...+++..+ +.+ ...+.++..+...+++++|..++++..+. -
T Consensus 280 ~-~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 280 P-AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred H-HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2 3456777888899999999998888776642 222 24666777889999999999999977652 1
Q ss_pred CCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC---------CCCC-hhHHHHHHHH
Q 038673 284 TKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP---------VEPN-GGVWGALLGA 353 (548)
Q Consensus 284 ~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p~-~~~~~~ll~~ 353 (548)
..++.+. -..+|+.|...|...|++++|.+++++.- ..+. ...++.|-.+
T Consensus 359 ~g~~~~~--------------------~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~ 418 (508)
T KOG1840|consen 359 PGEDNVN--------------------LAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEA 418 (508)
T ss_pred ccccchH--------------------HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHH
Confidence 2222211 24679999999999999999999998772 1222 4567778889
Q ss_pred HHhcCCHHHHHHHHHHHhh----cCCC---CchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 354 CQIHRNPEIAQIAANHLFE----LEPD---KIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~----~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
|.+.++++.|.++|.+... ..|+ ...+|..|+..|.+.|++++|.++.....
T Consensus 419 ~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 419 YEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9999999999999987665 3444 45688899999999999999999988775
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-07 Score=89.24 Aligned_cols=370 Identities=12% Similarity=0.085 Sum_probs=234.8
Q ss_pred chHHHhcc-CC-CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHh
Q 038673 4 FPRLVFEQ-VK-YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILL 81 (548)
Q Consensus 4 ~A~~~f~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~ 81 (548)
.|+++|++ |. +|+...|++.|..=.+-...+.|..++++..- +.|+..+|.--.+.=-+.|....++++++.++..
T Consensus 159 gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 159 GARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 45555542 22 45666666666666666666666666666554 3466666555555555556666666666655553
Q ss_pred CCC-CCChhHHHHHHHHHHHcCChHHHHHHHccC----CC-CCeehHHHHHHHHHhCCChHHHHHH--------HccCCC
Q 038673 82 GGF-TSDLYVGNTMIGMYVKCGFLGCSRKVFDEM----PE-RDVVSWTELIVAYANNGDMESAGGL--------FNELPL 147 (548)
Q Consensus 82 ~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~-~~~~~~~~li~~~~~~g~~~~A~~~--------f~~m~~ 147 (548)
-+- ..+...+.+....=.++..++.|.-+|.-. +. +....|.....-=-+.|+.....+. ++.+..
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 100 111223333333333444555555554322 22 1222333333333334443333332 122222
Q ss_pred C---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH-------hhHHHHHHHH---HccCChhHHHHHHHHHHHc
Q 038673 148 K---DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY-------VTLVGVISAC---AQLGVIKYANWVCEIAEGS 214 (548)
Q Consensus 148 ~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~---~~~g~~~~a~~~~~~~~~~ 214 (548)
. |-.+|-..++.--..|+.+...++|++.... ++|-. ..|.-+=-+| ....+++.+.++++..++
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~- 394 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD- 394 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 2 5567888888888889999999999998764 56632 1232222222 346789999999999888
Q ss_pred CCCCCChHhHHHHHHHHHh----cCCCHHHHHHHHhcCC--CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 038673 215 GFGPINNVVVGSALIDMYS----KCGSIDDAYRIFVGMK--QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNG 288 (548)
Q Consensus 215 ~~~p~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 288 (548)
+.| ....++.-+--+|+ ++.++..|.+++.... -|-..++...|..=.+.++++....++++.++- .|.
T Consensus 395 -lIP-HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe- 469 (677)
T KOG1915|consen 395 -LIP-HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPE- 469 (677)
T ss_pred -hcC-cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChH-
Confidence 334 46666666655555 6789999999998876 366778888888888999999999999999883 343
Q ss_pred hhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC----hhHHHHHHHHHHhcCCHHHHH
Q 038673 289 VTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPN----GGVWGALLGACQIHRNPEIAQ 364 (548)
Q Consensus 289 ~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~~~~~~a~ 364 (548)
+..+|......-...|+.+.|..+|+-...+|. ...|.+.|.--...|..+.|.
T Consensus 470 ----------------------~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR 527 (677)
T KOG1915|consen 470 ----------------------NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR 527 (677)
T ss_pred ----------------------hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH
Confidence 345677777777788999999999987754453 567888888888899999999
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHH-----HcC-----------CchHHHHHHHHHH
Q 038673 365 IAANHLFELEPDKIGNYIILSNIYA-----SAG-----------MWDDVSRVRRLLK 405 (548)
Q Consensus 365 ~~~~~~~~~~p~~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~m~ 405 (548)
.+++++++..+... ++...+..-. ..| ....|..+|++..
T Consensus 528 ~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 528 ALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 99999999887665 6776665443 333 4556777777654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.1e-09 Score=95.51 Aligned_cols=228 Identities=14% Similarity=0.045 Sum_probs=128.7
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 038673 21 TALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVK 100 (548)
Q Consensus 21 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 100 (548)
+-|..+|.+.|.+.+|.+.|+.-+.+ .|-+.||..|-++|.+....+.|..++.+-+.. ++.|+.......+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 34556666666666666666666553 455556666666666666666666666665554 35555555555556666
Q ss_pred cCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC
Q 038673 101 CGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAG 180 (548)
Q Consensus 101 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 180 (548)
.++.++|.+++....+. ...++.+...+..+|.-.++++-|+.+|+++.+.|
T Consensus 303 m~~~~~a~~lYk~vlk~----------------------------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG 354 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL----------------------------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG 354 (478)
T ss_pred HHhHHHHHHHHHHHHhc----------------------------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc
Confidence 66666666665544321 11233444444455555566666666666666665
Q ss_pred CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC---ChhhhH
Q 038673 181 VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR---NVFSYS 257 (548)
Q Consensus 181 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~ 257 (548)
+. +...|+.+.-+|.-.++++.+..-|.++...--.|.....+|..|.......|++..|.+.|+-.... +..++|
T Consensus 355 ~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealn 433 (478)
T KOG1129|consen 355 AQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALN 433 (478)
T ss_pred CC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHH
Confidence 33 44455555555555566666666665555444333234455666666666666666666666555432 234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 258 SMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 258 ~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
.|.-.-.+.|+.++|..++.....
T Consensus 434 NLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 434 NLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred hHHHHHhhcCchHHHHHHHHHhhh
Confidence 555555566666666666665544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.1e-07 Score=83.82 Aligned_cols=259 Identities=12% Similarity=-0.042 Sum_probs=174.2
Q ss_pred CCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHH---HHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 038673 117 RDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAM---VTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVIS 193 (548)
Q Consensus 117 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 193 (548)
.|+.....+...+...|+.++|+..|++...-|+.+...| .-.+.+.|+++....+...+.... +-....|..-+.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 3566777888888888888888888887765544433332 334567788888777777775432 112222333333
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHH
Q 038673 194 ACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAH 270 (548)
Q Consensus 194 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 270 (548)
......+++.|..+-+..++.... +...+-.-...+...|+.++|.-.|+.... -+..+|..|+.+|...|...
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r---~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPR---NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcc---cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 344556778888888877776644 666666666777788888888888887652 36788889999999999988
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHH-HHHH-HcCCHHHHHHHHHhC-CCCCC-hhH
Q 038673 271 AAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMV-DLLG-RAGCLEEALKMVEKM-PVEPN-GGV 346 (548)
Q Consensus 271 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~m-~~~p~-~~~ 346 (548)
+|.-+-+...+. +.-+.. +...+. ..+. ..---++|..++++- .++|+ ...
T Consensus 386 EA~~~An~~~~~-~~~sA~------------------------~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A 440 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSAR------------------------SLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA 440 (564)
T ss_pred HHHHHHHHHHHH-hhcchh------------------------hhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHH
Confidence 888777665542 111222 222221 1111 112236788888766 36777 344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 347 WGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 347 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
.+.+...|...|..+.++.++++.+...|+.. ..+.|+..+.....+++|++.|....
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55555778888888889999888888888765 78888888888888888888887654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.8e-07 Score=87.35 Aligned_cols=360 Identities=14% Similarity=0.162 Sum_probs=239.3
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhcc----------------C------CcHHHHHHH
Q 038673 18 FLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV----------------L------DVSLGQQIH 75 (548)
Q Consensus 18 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~----------------~------~~~~a~~~~ 75 (548)
..|++|..-|.+.|.+++|.++|++....= .+..-|..+..+|+.- + +++....-+
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 469999999999999999999999887642 2333355555544321 1 133344444
Q ss_pred HHHHHhCC----------CCCChhHHHHHHHHHHHcCChHHHHHHHccCCC---C------CeehHHHHHHHHHhCCChH
Q 038673 76 AQTILLGG----------FTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---R------DVVSWTELIVAYANNGDME 136 (548)
Q Consensus 76 ~~~~~~~~----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~------~~~~~~~li~~~~~~g~~~ 136 (548)
+.++...+ .+.++..|..-+..+ .|+..+-..+|.+..+ | -...|..+...|-.+|+++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 44443321 234455555555544 3445555555554432 1 2246888999999999999
Q ss_pred HHHHHHccCCCCC-------hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCC----------C-CH------hhHHHHH
Q 038673 137 SAGGLFNELPLKD-------KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVE----------T-DY------VTLVGVI 192 (548)
Q Consensus 137 ~A~~~f~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----------p-~~------~t~~~ll 192 (548)
.|..+|++..+-+ ..+|-.-...=.+..+++.|+++++......-. | -. ..|...+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 9999999876432 235666666667788899999988776432111 1 11 1233333
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCh-hhhHHHHHHHHh--
Q 038673 193 SACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ----RNV-FSYSSMILGFAM-- 265 (548)
Q Consensus 193 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~-~~~~~li~~~~~-- 265 (548)
..--..|-++..+.+|+.+++..+. ++.+.-.....+-...-++++.+++++-.. |++ ..|+.-+.-+.+
T Consensus 485 DleEs~gtfestk~vYdriidLria---TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIA---TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Confidence 4444567888999999999998877 565555566666777788999999998763 454 468877765554
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCC
Q 038673 266 -HGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VEP 342 (548)
Q Consensus 266 -~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p 342 (548)
....+.|..+|++.++ |++|...-+. |-.....--+.|....|+.++++.. +++
T Consensus 562 gg~klEraRdLFEqaL~-~Cpp~~aKti----------------------yLlYA~lEEe~GLar~amsiyerat~~v~~ 618 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALD-GCPPEHAKTI----------------------YLLYAKLEEEHGLARHAMSIYERATSAVKE 618 (835)
T ss_pred cCCCHHHHHHHHHHHHh-cCCHHHHHHH----------------------HHHHHHHHHHhhHHHHHHHHHHHHHhcCCH
Confidence 2468999999999998 6777655432 3333344456688889999999885 344
Q ss_pred C--hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch--hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 343 N--GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG--NYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 343 ~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
. ...|+..|.-....=-+.....+++++++.-|++.. ...-.+.+-.+.|..+.|..++.--.+-
T Consensus 619 a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 619 AQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 3 567888885444333366778899999998887543 3334566678889999999998765543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.9e-08 Score=94.06 Aligned_cols=276 Identities=14% Similarity=0.035 Sum_probs=123.9
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHH
Q 038673 85 TSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---RDVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVT 158 (548)
Q Consensus 85 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~ 158 (548)
..++.+.-...+-+...+++.+..++++...+ .....+..-|.++...|+..+-..+=.++. +....+|-++..
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 34444444444444445555555555554443 222333333444444444443333333332 123445555555
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCC
Q 038673 159 GYVQNAKPREAIEYFERMQYAGVETD-YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGS 237 (548)
Q Consensus 159 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~ 237 (548)
-|...|+..+|.+.|.+.... .|. ...|.....+++..|..++|...+..+-+.-..- .-+.. -+.--|.+.++
T Consensus 321 YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~-hlP~L--Ylgmey~~t~n 395 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC-HLPSL--YLGMEYMRTNN 395 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC-cchHH--HHHHHHHHhcc
Confidence 555555555555555444321 111 1234444444555555555555554443321110 01111 12223444455
Q ss_pred HHHHHHHHhcCC---CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHhhHHHHHHHHhhcCCccCCCCcCH
Q 038673 238 IDDAYRIFVGMK---QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT--ETKPNGVTFIGVLTACSHVGLKCYGVSPST 312 (548)
Q Consensus 238 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~ 312 (548)
++.|.+.|.... ..|+...+-+.-.....+.+.+|..+|+..+.. .+.+... -..
T Consensus 396 ~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~--------------------~w~ 455 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI--------------------FWE 455 (611)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc--------------------chh
Confidence 555555554443 124444444444444445555555555544421 0000000 122
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC-CC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 313 DHYACMVDLLGRAGCLEEALKMVEKMP-VE-PNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
.+++.|..+|.+.+.+++|+..+++.- .. .|..++.++.-.+...|+++.|...|.+.+.+.|++..+-..|.
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 344555556666666666666665542 22 24555555555566666666666666666666666654434333
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.5e-08 Score=97.35 Aligned_cols=233 Identities=16% Similarity=0.140 Sum_probs=145.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHC-----CC-CCChhh-HHHHHHHhhccCCcHHHHHHHHHHHHh-----CCCCCC-hh
Q 038673 23 LIRGYILQGHLKDSISLYCSMRRE-----GI-GPVSFT-LSALFKACTEVLDVSLGQQIHAQTILL-----GGFTSD-LY 89 (548)
Q Consensus 23 li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~~-~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~~~~~~-~~ 89 (548)
+...|...|+++.|..++++..+. |. .|...+ .+.+...+...+++.+|..+|+.++.. |...|. ..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 556666666666666666665542 10 122211 222334445555566665555555442 111111 22
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCC---CCChh-HHHHHHHHHHHCCC
Q 038673 90 VGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELP---LKDKV-AWTAMVTGYVQNAK 165 (548)
Q Consensus 90 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~-~~~~li~~~~~~g~ 165 (548)
+++.|..+|.+.|++++|... .+.|.+++.+.. .+.+. .++.++..+...++
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~------------------------~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~ 340 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEY------------------------CERALEIYEKLLGASHPEVAAQLSELAAILQSMNE 340 (508)
T ss_pred HHHHHHHHHhccCChHHHHHH------------------------HHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc
Confidence 444445555555555555555 233444444422 22222 46677778888899
Q ss_pred hhHHHHHHHHHHHC---CCCCCH----hhHHHHHHHHHccCChhHHHHHHHHHHHcC------CCCCChHhHHHHHHHHH
Q 038673 166 PREAIEYFERMQYA---GVETDY----VTLVGVISACAQLGVIKYANWVCEIAEGSG------FGPINNVVVGSALIDMY 232 (548)
Q Consensus 166 ~~~A~~l~~~m~~~---g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~p~~~~~~~~~li~~y 232 (548)
+++|..+++...+. -..++. .+++.+...+...|++++|.++|+.++... ..+ ......+.|...|
T Consensus 341 ~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~-~~~~~l~~la~~~ 419 (508)
T KOG1840|consen 341 YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY-GVGKPLNQLAEAY 419 (508)
T ss_pred hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh-hhhHHHHHHHHHH
Confidence 99998888865431 123332 468888899999999999999998886431 122 3456677888899
Q ss_pred hcCCCHHHHHHHHhcCCC---------CCh-hhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 038673 233 SKCGSIDDAYRIFVGMKQ---------RNV-FSYSSMILGFAMHGRAHAAIQLFGDMV 280 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~~~~---------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~ 280 (548)
.+.+++++|.++|.+... |++ .+|..|...|...|+++.|+++.+...
T Consensus 420 ~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 420 EELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999999988887541 333 578899999999999999999988775
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.8e-08 Score=93.54 Aligned_cols=212 Identities=14% Similarity=0.078 Sum_probs=146.8
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHH
Q 038673 164 AKPREAIEYFERMQYAG-VETD--YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD 240 (548)
Q Consensus 164 g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~ 240 (548)
+..+.++.-+.++.... ..|+ ...|......+...|+.++|...|..+++..+. +..+|+.+...|...|++++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD---MADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHHH
Confidence 45667777777776532 2332 234666677788889999999999988887644 88899999999999999999
Q ss_pred HHHHHhcCCC--C-ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHH
Q 038673 241 AYRIFVGMKQ--R-NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYAC 317 (548)
Q Consensus 241 A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~ 317 (548)
|...|++..+ | +..+|..+...+...|++++|++.|++..+ ..|+... ...
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~------------------------~~~ 170 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPY------------------------RAL 170 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHH------------------------HHH
Confidence 9999988864 3 456788888888889999999999999887 4454321 111
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHh-------hcCCCCchhHHHHHHHH
Q 038673 318 MVDLLGRAGCLEEALKMVEKMP--VEPNGGVWGALLGACQIHRNPEIAQIAANHLF-------ELEPDKIGNYIILSNIY 388 (548)
Q Consensus 318 li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~ 388 (548)
....+...+++++|.+.|++.. ..|+...| .+. ....|+...+ ..++.+. ++.|..+.+|..++..|
T Consensus 171 ~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~ 246 (296)
T PRK11189 171 WLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYY 246 (296)
T ss_pred HHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 1122345678999999986542 23333222 222 2234444433 2344443 34556667899999999
Q ss_pred HHcCCchHHHHHHHHHHhCC
Q 038673 389 ASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 389 ~~~g~~~~a~~~~~~m~~~g 408 (548)
...|++++|...|++..+.+
T Consensus 247 ~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 247 LSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999887544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.6e-07 Score=90.19 Aligned_cols=267 Identities=12% Similarity=0.016 Sum_probs=196.0
Q ss_pred CCeehHHHHHHHHHhCCChHHHHHHHccCCCCC---hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 038673 117 RDVVSWTELIVAYANNGDMESAGGLFNELPLKD---KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVIS 193 (548)
Q Consensus 117 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 193 (548)
.++.....-..-+...+++.+..++++...+.| ...+..-|.++...|+..+-..+=.+|++. .+-...+|-++..
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 455555666777888999999999999887554 445666677889999988888887888875 3446678989888
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHH
Q 038673 194 ACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAH 270 (548)
Q Consensus 194 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 270 (548)
-|...|+.++|++++......... -...|-.+...|+-.|.-+.|...+....+ .....+--+---|.+.++.+
T Consensus 321 YYl~i~k~seARry~SKat~lD~~---fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT---FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc---ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 888889999999999988765533 667899999999999999999888776543 11122223344578889999
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHH
Q 038673 271 AAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWG 348 (548)
Q Consensus 271 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~ 348 (548)
.|.+.|.+... +.|+......=+. +. ..++.....+ ..-+..|+...+... -++ -..+++
T Consensus 398 LAe~Ff~~A~a--i~P~Dplv~~Elg-----------vv--ay~~~~y~~A---~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 398 LAEKFFKQALA--IAPSDPLVLHELG-----------VV--AYTYEEYPEA---LKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred HHHHHHHHHHh--cCCCcchhhhhhh-----------he--eehHhhhHHH---HHHHHHHHHHhhhccccccchhHHHH
Confidence 99999998876 7777643211111 00 0111111111 122445555555553 122 245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 349 ALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 349 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
.|-.+|++.+.+++|+..+++.+.+.|.++.+|..++-+|.-.|+++.|.+.|.+..
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 777899999999999999999999999999999999999999999999999988764
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.3e-08 Score=83.71 Aligned_cols=163 Identities=15% Similarity=0.092 Sum_probs=140.0
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHhcCCCC---ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038673 222 VVVGSALIDMYSKCGSIDDAYRIFVGMKQR---NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTAC 298 (548)
Q Consensus 222 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 298 (548)
..+...|.-.|...|+...|.+-+++..+. +..+|..+...|-+.|+.+.|.+.|++..+ +.|+.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~---------- 102 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNN---------- 102 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCc----------
Confidence 345666788899999999999999998864 346788899999999999999999999988 56663
Q ss_pred hhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038673 299 SHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPN----GGVWGALLGACQIHRNPEIAQIAANHLFELE 374 (548)
Q Consensus 299 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 374 (548)
-.+.|...--+|..|++++|...|++....|+ ..+|..+..+..+.|+.+.|...+++.++.+
T Consensus 103 -------------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 103 -------------GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred -------------cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 34577777788999999999999998753443 6788888888899999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 375 PDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 375 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
|+.+.....+.....+.|++-.|..+++....++.
T Consensus 170 p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 170 PQFPPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 99999999999999999999999999998887665
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.4e-07 Score=78.97 Aligned_cols=199 Identities=15% Similarity=0.046 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDM 231 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~ 231 (548)
+...+.-+|.+.|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+.|+.+.+..+. +..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~---~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN---NGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC---ccchhhhhhHH
Confidence 46667789999999999999999998863 334567888888899999999999999999988765 88999999999
Q ss_pred HhcCCCHHHHHHHHhcCCC-C----ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccC
Q 038673 232 YSKCGSIDDAYRIFVGMKQ-R----NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCY 306 (548)
Q Consensus 232 y~~~g~~~~A~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 306 (548)
+|..|++++|...|++... | -..+|..+.-+..+.|+.+.|.+.|++.++ ..|+
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~------------------- 171 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQ------------------- 171 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcC-------------------
Confidence 9999999999999998774 3 246788888888899999999999999988 3444
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 307 GVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 307 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
...+...+.....+.|++..|..+++... ..++..+....|..-...|+.+.+.+.-.++.+..|....
T Consensus 172 ----~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 172 ----FPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred ----CChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 23456678888889999999999998874 4577888878888889999999999998899989998763
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.5e-06 Score=86.39 Aligned_cols=362 Identities=12% Similarity=0.012 Sum_probs=222.9
Q ss_pred HHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC----
Q 038673 41 CSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---- 116 (548)
Q Consensus 41 ~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---- 116 (548)
.++....++.|...|..+.-+....|+++.+-+.|++.+..- -.....|+.+...|..+|.-..|..+++.-..
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~--~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS--FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 333334456677788888888888888888888888877643 45567788888888888888888888876543
Q ss_pred CCeehHHHHHH-HH-HhCCChHHHHHHHccCCC--------CChhHHHHHHHHHHHC-----------CChhHHHHHHHH
Q 038673 117 RDVVSWTELIV-AY-ANNGDMESAGGLFNELPL--------KDKVAWTAMVTGYVQN-----------AKPREAIEYFER 175 (548)
Q Consensus 117 ~~~~~~~~li~-~~-~~~g~~~~A~~~f~~m~~--------~~~~~~~~li~~~~~~-----------g~~~~A~~l~~~ 175 (548)
|+..+--.++. .| -+.+..++++++-.+... .....|-.+.-+|... ....++++.+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 33333333332 22 234556665555433321 1344555555555432 123467777777
Q ss_pred HHHCC-CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChh
Q 038673 176 MQYAG-VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVF 254 (548)
Q Consensus 176 m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 254 (548)
..+.+ -.|+..-|.++ -++..++++.|.+..++..+.+.. .+...|..|.-.+...+++.+|+.+.+........
T Consensus 470 av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~--~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRG--DSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred HHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 76643 34444444333 356677889999999888888655 58888888888888889999998888766531111
Q ss_pred hhH---HHHHHHHhcCCHHHHHHHHHHHHHc---------------------CC-----CC--CHhhHHHHHHHHh-hcC
Q 038673 255 SYS---SMILGFAMHGRAHAAIQLFGDMVKT---------------------ET-----KP--NGVTFIGVLTACS-HVG 302 (548)
Q Consensus 255 ~~~---~li~~~~~~g~~~~A~~l~~~m~~~---------------------g~-----~p--~~~t~~~ll~a~~-~~~ 302 (548)
.++ .-+..-...++.++|+.....+... |+ .| ...|+..+..-.. +..
T Consensus 546 N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~ 625 (799)
T KOG4162|consen 546 NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK 625 (799)
T ss_pred hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh
Confidence 111 1111111133344443332222110 00 01 0112222221111 100
Q ss_pred -------C-----------------------------------------ccCCCCc-CHHHHHHHHHHHHHcCCHHHHHH
Q 038673 303 -------L-----------------------------------------KCYGVSP-STDHYACMVDLLGRAGCLEEALK 333 (548)
Q Consensus 303 -------~-----------------------------------------~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 333 (548)
+ ...++.| ....|......+...|.+++|.+
T Consensus 626 ~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 626 SAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred hcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 0 1111111 22334444455666778888887
Q ss_pred HHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHH--HHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 334 MVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQI--AANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 334 ~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
.|...- +.|+ +.+..++-..+.+.|+...|.. ++..+.+++|.++..|..|+.++-+.|+.++|.+.|....+..
T Consensus 706 af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 706 AFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 776653 6777 6677888888999999888888 9999999999999999999999999999999999998876543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.5e-07 Score=83.32 Aligned_cols=302 Identities=14% Similarity=0.037 Sum_probs=211.2
Q ss_pred CCChhhHHHHHHHhhc--cCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHH--
Q 038673 49 GPVSFTLSALFKACTE--VLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTE-- 124 (548)
Q Consensus 49 ~p~~~~~~~ll~a~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-- 124 (548)
+|+..+....+.+++. .++-..+.+.+-.+.....++.|+....++.++|...|+.+.|...|++..--|+.+...
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 3444444455555443 344444444444444433378899999999999999999999999999876544433322
Q ss_pred -HHHHHHhCCChHHHHHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 038673 125 -LIVAYANNGDMESAGGLFNELPLK---DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGV 200 (548)
Q Consensus 125 -li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 200 (548)
..-.+.+.|+++....+...+-.. ....|-.-....-..++++.|+.+-++-.+.. +-+...|..-..++...++
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccc
Confidence 233456788888877776655433 34456555566667788999999988877643 2234455555566788899
Q ss_pred hhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC---CCChhhhHHHH-HHH-HhcCCHHHHHHH
Q 038673 201 IKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK---QRNVFSYSSMI-LGF-AMHGRAHAAIQL 275 (548)
Q Consensus 201 ~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li-~~~-~~~g~~~~A~~l 275 (548)
.++|.-.|+.+.... | .+...|.-|+..|...|++.+|.-.-+... ..+..+.+.+- ..+ -...--++|.++
T Consensus 350 ~~~A~IaFR~Aq~La--p-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLA--P-YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred hHHHHHHHHHHHhcc--h-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 999999999887765 4 599999999999999999999876544322 12222222221 111 112234677777
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCChhHHHHHHHHH
Q 038673 276 FGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPNGGVWGALLGAC 354 (548)
Q Consensus 276 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~ 354 (548)
++.-.. +.|+-. ...+.+...+...|..+++..++++.- ..||....+.|-..+
T Consensus 427 ~ek~L~--~~P~Y~-----------------------~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 427 AEKSLK--INPIYT-----------------------PAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIM 481 (564)
T ss_pred HHhhhc--cCCccH-----------------------HHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHH
Confidence 776655 455522 345667788899999999999998874 679999999999999
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 355 QIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 355 ~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
+..+.+++|...|..++.++|++..
T Consensus 482 ~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 482 RAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHhhhHHHHHHHHHHHHhcCccchH
Confidence 9999999999999999999999763
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.5e-08 Score=90.94 Aligned_cols=248 Identities=10% Similarity=0.024 Sum_probs=161.7
Q ss_pred HHhCCChHHHHHHHc--cCCCC-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHH
Q 038673 129 YANNGDMESAGGLFN--ELPLK-DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYAN 205 (548)
Q Consensus 129 ~~~~g~~~~A~~~f~--~m~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 205 (548)
+.-.|++..++.-.+ ...+. +.....-+.++|...|+++.++. +..... .|.......+...+....+-+.+.
T Consensus 11 ~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 11 QFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 444567776664443 11111 23455667788888898776553 333333 566555555544444333444443
Q ss_pred HHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 038673 206 WVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETK 285 (548)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 285 (548)
.-++........+ .+..+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ +.
T Consensus 87 ~~l~~~~~~~~~~-~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~ 161 (290)
T PF04733_consen 87 EELKELLADQAGE-SNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--ID 161 (290)
T ss_dssp HHHHHCCCTS----CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CS
T ss_pred HHHHHHHHhcccc-ccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cC
Confidence 3333322222221 24555555667888899999999998876 5666777788899999999999999999987 34
Q ss_pred CCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHHH
Q 038673 286 PNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VEPNGGVWGALLGACQIHRNPEIA 363 (548)
Q Consensus 286 p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a 363 (548)
.|.. ...+ ..+.+..+.-.+.+.+|.-+|+++. ..+++.+.+.+..+....|++++|
T Consensus 162 eD~~-l~qL--------------------a~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eA 220 (290)
T PF04733_consen 162 EDSI-LTQL--------------------AEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEA 220 (290)
T ss_dssp CCHH-HHHH--------------------HHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHH
T ss_pred CcHH-HHHH--------------------HHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4432 2222 2233344433457899999999985 456788888888999999999999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHcCCc-hHHHHHHHHHHh
Q 038673 364 QIAANHLFELEPDKIGNYIILSNIYASAGMW-DDVSRVRRLLKM 406 (548)
Q Consensus 364 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 406 (548)
+.++++.++.+|.++.+...++.+..-.|+. +.+.+++.+++.
T Consensus 221 e~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 221 EELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 9999999999999999999999988888988 667788887764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-06 Score=83.94 Aligned_cols=223 Identities=11% Similarity=0.009 Sum_probs=170.3
Q ss_pred HhCCChHHHHHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHH
Q 038673 130 ANNGDMESAGGLFNELPLK---DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANW 206 (548)
Q Consensus 130 ~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 206 (548)
.-.|+.-.|.+.|+....- +...|--+...|++..+.++....|++..+.+ +-|..+|..-.....-++++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 4557777777777776532 33347778889999999999999999998764 3356677777777777789999999
Q ss_pred HHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038673 207 VCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--R-NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTE 283 (548)
Q Consensus 207 ~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 283 (548)
=|+..+...++ +...|-.+.-+.-|.++++++...|++..+ | -+..||-....+..++++++|++.|+..++
T Consensus 416 DF~Kai~L~pe---~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 416 DFQKAISLDPE---NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHhhcChh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 99999887755 899999999999999999999999999885 3 457899999999999999999999999987
Q ss_pred CCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHH
Q 038673 284 TKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPE 361 (548)
Q Consensus 284 ~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~ 361 (548)
+.|+..-. -+.+.+.+--.++.. .-.+++.+|.+++++.- +.|. ...+.+|-..-.+.|+.+
T Consensus 491 LE~~~~~~---------------~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~ 554 (606)
T KOG0547|consen 491 LEPREHLI---------------IVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKID 554 (606)
T ss_pred hccccccc---------------cccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHH
Confidence 45553210 001111111122211 23489999999999874 5554 667888889999999999
Q ss_pred HHHHHHHHHhhcC
Q 038673 362 IAQIAANHLFELE 374 (548)
Q Consensus 362 ~a~~~~~~~~~~~ 374 (548)
+|+++|++...+-
T Consensus 555 eAielFEksa~lA 567 (606)
T KOG0547|consen 555 EAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877643
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.8e-06 Score=86.31 Aligned_cols=291 Identities=11% Similarity=-0.012 Sum_probs=196.9
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCh-hhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC-
Q 038673 25 RGYILQGHLKDSISLYCSMRREGIGPVS-FTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCG- 102 (548)
Q Consensus 25 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 102 (548)
..+...|++++|++.++.-... -+|. ..+......+.+.|+.++|..++..+++.+ |.|..-|..|..+..-..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 4467889999999999875543 3454 445666777899999999999999999987 777777788877773332
Q ss_pred ----ChHHHHHHHccCCC--CCeehHHHHHHHHHhCCChH-HHHHHHccCCCCC-hhHHHHHHHHHHHCCChhHHHHHHH
Q 038673 103 ----FLGCSRKVFDEMPE--RDVVSWTELIVAYANNGDME-SAGGLFNELPLKD-KVAWTAMVTGYVQNAKPREAIEYFE 174 (548)
Q Consensus 103 ----~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~-~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~l~~ 174 (548)
+.+....+|+++.+ |...+...+.-.+.....+. .+...+..+..+. +.+++.+-..|....+..-..+++.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 56777788887754 32222222222222211222 2222333333444 3567777777776665555566666
Q ss_pred HHHHC----C----------CCCCH--hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCH
Q 038673 175 RMQYA----G----------VETDY--VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSI 238 (548)
Q Consensus 175 ~m~~~----g----------~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~ 238 (548)
..... + -+|.. .++.-+...+...|+.++|.++.+..++..+. .+..|..-...|-..|++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt---~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT---LVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHCCCH
Confidence 65432 1 12333 24455666788999999999999999998744 789999999999999999
Q ss_pred HHHHHHHhcCCCCC---hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHH
Q 038673 239 DDAYRIFVGMKQRN---VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHY 315 (548)
Q Consensus 239 ~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~ 315 (548)
++|.+.++....-| -..=+-.+..+.+.|+.++|.+++......+..|-...+ -+.+ .--.
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~--~mQc--------------~Wf~ 308 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLN--DMQC--------------MWFE 308 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHH--HHHH--------------HHHH
Confidence 99999999887644 345555677888999999999999988776653332211 0000 0012
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC
Q 038673 316 ACMVDLLGRAGCLEEALKMVEKM 338 (548)
Q Consensus 316 ~~li~~~~~~g~~~~A~~~~~~m 338 (548)
.....+|.+.|++..|++.|..+
T Consensus 309 ~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 309 TECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 34567889999999998877665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-05 Score=81.51 Aligned_cols=389 Identities=13% Similarity=0.094 Sum_probs=231.9
Q ss_pred CcchHHHhccCCC--CCcch-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhh----c--cCCcHHHH
Q 038673 2 DSFPRLVFEQVKY--KNPFL-WTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACT----E--VLDVSLGQ 72 (548)
Q Consensus 2 ~~~A~~~f~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~----~--~~~~~~a~ 72 (548)
.+.|.+.++.-.. .|..+ .......+.+.|+.++|..+|..++..+ |+...|...+..+. . ..+.+...
T Consensus 20 ~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~ 97 (517)
T PF12569_consen 20 YEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDEDVEKLL 97 (517)
T ss_pred HHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccccHHHHH
Confidence 4566677655432 34444 4556677889999999999999999964 77777766666554 1 22467778
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHHcCCh-HHHHHHHccCCCCCe-ehHHHHHHHHHhCCChHHHHHHHccC-----
Q 038673 73 QIHAQTILLGGFTSDLYVGNTMIGMYVKCGFL-GCSRKVFDEMPERDV-VSWTELIVAYANNGDMESAGGLFNEL----- 145 (548)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~m----- 145 (548)
++++.+...- +.....-..-+.. ..-..+ ..+...+..+..+.+ .+++.+-..|....+.+-..+++...
T Consensus 98 ~~y~~l~~~y--p~s~~~~rl~L~~-~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~ 174 (517)
T PF12569_consen 98 ELYDELAEKY--PRSDAPRRLPLDF-LEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLE 174 (517)
T ss_pred HHHHHHHHhC--ccccchhHhhccc-CCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhc
Confidence 8888776542 2211111111111 110111 122233333333333 34555555555444444333443332
Q ss_pred -------------CCCChh--HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCChhHHHHHHH
Q 038673 146 -------------PLKDKV--AWTAMVTGYVQNAKPREAIEYFERMQYAGVETD-YVTLVGVISACAQLGVIKYANWVCE 209 (548)
Q Consensus 146 -------------~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~ 209 (548)
..|... ++.-+...|-..|++++|+.++++.... .|+ ...|..-...+-+.|++.+|.+..+
T Consensus 175 ~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~ 252 (517)
T PF12569_consen 175 SNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMD 252 (517)
T ss_pred ccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 122333 3455677888999999999999988875 455 4567778888999999999999999
Q ss_pred HHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCCh----------hhh--HHHHHHHHhcCCHHHHHHHHH
Q 038673 210 IAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNV----------FSY--SSMILGFAMHGRAHAAIQLFG 277 (548)
Q Consensus 210 ~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~----------~~~--~~li~~~~~~g~~~~A~~l~~ 277 (548)
.+...... |..+-+-.+..+.++|++++|.+++....+++. ..| .....+|.+.|++..|++.|.
T Consensus 253 ~Ar~LD~~---DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~ 329 (517)
T PF12569_consen 253 EARELDLA---DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFH 329 (517)
T ss_pred HHHhCChh---hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99988876 999999999999999999999999888776542 133 234567889999999988777
Q ss_pred HHHHc--CC-------------CCCHhhHHHHHHHHhhcCC-----------------------ccCCC-------CcCH
Q 038673 278 DMVKT--ET-------------KPNGVTFIGVLTACSHVGL-----------------------KCYGV-------SPST 312 (548)
Q Consensus 278 ~m~~~--g~-------------~p~~~t~~~ll~a~~~~~~-----------------------~~~~~-------~p~~ 312 (548)
...+. .+ +.+..+|..+|...-+... ...+- ..+.
T Consensus 330 ~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~ 409 (517)
T PF12569_consen 330 AVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSA 409 (517)
T ss_pred HHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCCh
Confidence 66543 11 1223334444433322211 00000 0011
Q ss_pred HHHHHHHHHH---HHcCCHHHHHHHH-H----------hC----CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038673 313 DHYACMVDLL---GRAGCLEEALKMV-E----------KM----PVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELE 374 (548)
Q Consensus 313 ~~~~~li~~~---~~~g~~~~A~~~~-~----------~m----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 374 (548)
.--..+-.-. .+...-+++...- + +. +.+.|......-+ .....-.+.|.++++-+.+..
T Consensus 410 ~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL--~~t~dPLe~A~kfl~pL~~~a 487 (517)
T PF12569_consen 410 AERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKL--LKTEDPLEEAMKFLKPLLELA 487 (517)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHHHH--hcCCcHHHHHHHHHHHHHHhC
Confidence 1001111000 1111111111111 0 00 1222322222222 123345689999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHH
Q 038673 375 PDKIGNYIILSNIYASAGMWDDVSRVRR 402 (548)
Q Consensus 375 p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 402 (548)
|++..+|..-...|.+.|++--|.+.+.
T Consensus 488 ~~~~et~~laFeVy~Rk~K~LLaLqaL~ 515 (517)
T PF12569_consen 488 PDNIETHLLAFEVYLRKGKYLLALQALK 515 (517)
T ss_pred ccchhhHHHHhHHHHhcCcHHHHHHHHH
Confidence 9999999999999999999999888765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-05 Score=79.84 Aligned_cols=356 Identities=15% Similarity=0.184 Sum_probs=180.8
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCC-----CCCCh----
Q 038673 18 FLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGG-----FTSDL---- 88 (548)
Q Consensus 18 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-----~~~~~---- 88 (548)
..|...+......|-++-++.++++.++ +.|. .-.--+..+...+++++|.+.++..+.... -+.+-
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~--~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLK--VAPE--AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHh--cCHH--HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 4688888877788888888888888776 3343 345555566667777777766665543210 12233
Q ss_pred ----------------------------------hHHHHHHHHHHHcCChHHHHHHHccCCC--CCeehHHHHHHHHHhC
Q 038673 89 ----------------------------------YVGNTMIGMYVKCGFLGCSRKVFDEMPE--RDVVSWTELIVAYANN 132 (548)
Q Consensus 89 ----------------------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~ 132 (548)
..|++|.+-|.+.|.++.|+++|++..+ -++.-|+.+-+.|++-
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQF 294 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHH
Confidence 3455555555555555555555555433 1222222222222211
Q ss_pred C----------------C------hHHHHHHHccCCC---------------CChhHHHHHHHHHHHCCChhHHHHHHHH
Q 038673 133 G----------------D------MESAGGLFNELPL---------------KDKVAWTAMVTGYVQNAKPREAIEYFER 175 (548)
Q Consensus 133 g----------------~------~~~A~~~f~~m~~---------------~~~~~~~~li~~~~~~g~~~~A~~l~~~ 175 (548)
. + ++-...-|+.+.. .++..|..-+. ...|+..+-...|.+
T Consensus 295 EE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyte 372 (835)
T KOG2047|consen 295 EESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTE 372 (835)
T ss_pred HHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHH
Confidence 0 0 1111111221110 12222222222 123444444555555
Q ss_pred HHHCCCCCC------HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-ChHhHHHHHHHHHhcCCCHHHHHHHHhcC
Q 038673 176 MQYAGVETD------YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPI-NNVVVGSALIDMYSKCGSIDDAYRIFVGM 248 (548)
Q Consensus 176 m~~~g~~p~------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 248 (548)
..+. +.|- ...+..+...|-+.|+++.|..+|++..+....-. .-..+|..-..+=.+..+++.|.++.++.
T Consensus 373 Av~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 373 AVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred HHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 4432 2221 11244455555555666666666655555443310 01244444445555555555555555544
Q ss_pred CC---------------------CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCC
Q 038673 249 KQ---------------------RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG 307 (548)
Q Consensus 249 ~~---------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 307 (548)
.. ++...|...+..--..|-++....+|+++++..+...
T Consensus 452 ~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP-------------------- 511 (835)
T KOG2047|consen 452 THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP-------------------- 511 (835)
T ss_pred hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH--------------------
Confidence 31 0122344444444444444555555555544322111
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CC-CC-hhHHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCCc--
Q 038673 308 VSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VE-PN-GGVWGALLGACQI---HRNPEIAQIAANHLFELEPDKI-- 378 (548)
Q Consensus 308 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~-p~-~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~-- 378 (548)
..-......+-...-++++.+++++-- ++ |+ ...|++.+.-+.+ ...+|.|..+|+++++.-|+..
T Consensus 512 -----qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aK 586 (835)
T KOG2047|consen 512 -----QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAK 586 (835)
T ss_pred -----HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 111112223445667899999998763 33 55 5688888854432 3468999999999999877532
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 379 GNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 379 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
..|...+..-.+-|....|+.++++.-
T Consensus 587 tiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 587 TIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 244444444556677778888887753
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.8e-06 Score=81.36 Aligned_cols=386 Identities=10% Similarity=0.048 Sum_probs=213.3
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 038673 17 PFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIG 96 (548)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 96 (548)
...|..++..| ..+++...+++.+.+... .+-...|.....-.+...|+.++|.......++.. ..+.+.|..+.-
T Consensus 8 ~~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl 83 (700)
T KOG1156|consen 8 NALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHH
Confidence 34455555554 335666666666666652 22233344333333445566666666666555543 445555665555
Q ss_pred HHHHcCChHHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHHHHHHccC---CCCChhHHHHHHHHHHHCCChhHHH
Q 038673 97 MYVKCGFLGCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESAGGLFNEL---PLKDKVAWTAMVTGYVQNAKPREAI 170 (548)
Q Consensus 97 ~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~ 170 (548)
.+-...++++|.+.|..... | |...|.-+.-.-.+.|+++.....-... .......|.....++.-.|++..|.
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55555667777777765442 2 3334444333334444444444332222 2234456666666666667777777
Q ss_pred HHHHHHHHCC-CCCCHhhHHHHHH------HHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHH
Q 038673 171 EYFERMQYAG-VETDYVTLVGVIS------ACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYR 243 (548)
Q Consensus 171 ~l~~~m~~~g-~~p~~~t~~~ll~------~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~ 243 (548)
.++++..+.. -.|+...|..... .....|.++.|.+.+..-...-+. ....--.-.+.+.+.+++++|..
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D---kla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD---KLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH---HHHHhhhHHHHHHHHhhHHhHHH
Confidence 7666665543 2344444432221 223445555555554443332222 33334445556666666666666
Q ss_pred HHhcCCC--CChhhhHHHH-HHHHhc----------------------------------CC-HHHHHHHHHHHHHcCCC
Q 038673 244 IFVGMKQ--RNVFSYSSMI-LGFAMH----------------------------------GR-AHAAIQLFGDMVKTETK 285 (548)
Q Consensus 244 ~~~~~~~--~~~~~~~~li-~~~~~~----------------------------------g~-~~~A~~l~~~m~~~g~~ 285 (548)
++..+.. ||..-|.-.. .++... .+ .+..-+.+..+.+.|++
T Consensus 241 ~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 241 VYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 6666654 2222222221 122111 11 22233345556666666
Q ss_pred CCHhhHHHHHH-------------HHhh----cCC-----ccCCCCcCHHHHH--HHHHHHHHcCCHHHHHHHHHhCC-C
Q 038673 286 PNGVTFIGVLT-------------ACSH----VGL-----KCYGVSPSTDHYA--CMVDLLGRAGCLEEALKMVEKMP-V 340 (548)
Q Consensus 286 p~~~t~~~ll~-------------a~~~----~~~-----~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~-~ 340 (548)
|-...+.++.. .+.+ .|+ ....-+|....|. .++..+-+.|+++.|+..++..- -
T Consensus 321 ~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH 400 (700)
T KOG1156|consen 321 SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH 400 (700)
T ss_pred chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 54433333221 1211 111 1112255655554 57788899999999999998774 4
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 341 EPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 341 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
.|+ +..|-.-.+.+...|+++.|...+++..+++-.|...-.--+.-..++.+.++|.++....-+.|.
T Consensus 401 TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 401 TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 566 334444447788899999999999999998877663333566677889999999999988877765
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-06 Score=84.20 Aligned_cols=206 Identities=7% Similarity=-0.160 Sum_probs=135.2
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
...|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|+++.|...++.+.+..+. +..++..+.
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg 139 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYAYLNRG 139 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Confidence 3457777778888888888888888887753 335667888888888888899888888888876644 677888888
Q ss_pred HHHhcCCCHHHHHHHHhcCCCCCh--hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCC
Q 038673 230 DMYSKCGSIDDAYRIFVGMKQRNV--FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG 307 (548)
Q Consensus 230 ~~y~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 307 (548)
..|...|++++|.+.|+...+.++ .........+...++.++|+..|.+.... ..|+..
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~------------------ 200 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQW------------------ 200 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCcccc------------------
Confidence 888888999999888888764322 11111122234567888999988765532 222211
Q ss_pred CCcCHHHHHHHHHHHHHcCCHH--HHHHHHHh-CC----CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-c
Q 038673 308 VSPSTDHYACMVDLLGRAGCLE--EALKMVEK-MP----VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDK-I 378 (548)
Q Consensus 308 ~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~-m~----~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-~ 378 (548)
...++..+ .|+.. ++.+.+.+ .. ..| ....|..+...+...|++++|...|+++++.+|.+ +
T Consensus 201 -------~~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 201 -------GWNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred -------HHHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 11122222 33332 23322221 11 112 24578888899999999999999999999999754 4
Q ss_pred hhHHHHHHH
Q 038673 379 GNYIILSNI 387 (548)
Q Consensus 379 ~~~~~l~~~ 387 (548)
..-..++..
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 333334433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.8e-06 Score=76.30 Aligned_cols=183 Identities=10% Similarity=0.042 Sum_probs=98.9
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHH-HHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 038673 24 IRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALF-KACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCG 102 (548)
Q Consensus 24 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 102 (548)
+.-+..+.++..|+.+++--..-+-.- .......| ..+-+.|++++|...+..+.... .++...+-.|..++.-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EE-E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREE-EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhh-hHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHH
Confidence 455667788888988887665433221 12333333 44568899999999999888765 677777777887777788
Q ss_pred ChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCC
Q 038673 103 FLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVE 182 (548)
Q Consensus 103 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 182 (548)
.+.+|..+-...++ ++..-..|.+.--+.|+-++-..+-+.+.... .---++.+..-..-.+++|+++|.+.... .
T Consensus 106 ~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n 181 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD--N 181 (557)
T ss_pred HHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc--C
Confidence 89999888666543 11222233333344455444444333332211 11112222222223455666666655543 2
Q ss_pred CCHhhHHHHHH-HHHccCChhHHHHHHHHHHH
Q 038673 183 TDYVTLVGVIS-ACAQLGVIKYANWVCEIAEG 213 (548)
Q Consensus 183 p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~ 213 (548)
|+-...+.-+. +|.+..-++-+.++++--.+
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 33333333222 23444444445555444433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.5e-05 Score=77.03 Aligned_cols=356 Identities=10% Similarity=0.017 Sum_probs=190.5
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC
Q 038673 24 IRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGF 103 (548)
Q Consensus 24 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 103 (548)
+.-+.++|++++|++.-.++...+ +-|...+..-+-+..+.+.++.|..+.+.- +....+...+..=.-+..+.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~~~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKN---GALLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---chhhhcchhhHHHHHHHHHccc
Confidence 344566788889999888888754 335566777777777888888887543321 1011111111112223346677
Q ss_pred hHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCC-------------------------------ChhH
Q 038673 104 LGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLK-------------------------------DKVA 152 (548)
Q Consensus 104 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-------------------------------~~~~ 152 (548)
.++|...++...+-+..+...-...+.+.|++++|..+++.+.+. ...+
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~s 174 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDS 174 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcch
Confidence 777777777555545445555566677777777777776665210 1112
Q ss_pred HHH---HHHHHHHCCChhHHHHHHHHHHHCC-------------CCCCHhhH-HHHHHHHHccCChhHHHHHHHHHHHcC
Q 038673 153 WTA---MVTGYVQNAKPREAIEYFERMQYAG-------------VETDYVTL-VGVISACAQLGVIKYANWVCEIAEGSG 215 (548)
Q Consensus 153 ~~~---li~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~ 215 (548)
|.. ....++..|++.+|+++++...+.+ +.-+..+. .-+.-++...|+-++|..++...++..
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 332 2345567788888888877762211 00011111 123334556778888888777777665
Q ss_pred CCCC-ChHhHHHHHHHHHhc---------------------------------------------CCCHHHHHHHHhcCC
Q 038673 216 FGPI-NNVVVGSALIDMYSK---------------------------------------------CGSIDDAYRIFVGMK 249 (548)
Q Consensus 216 ~~p~-~~~~~~~~li~~y~~---------------------------------------------~g~~~~A~~~~~~~~ 249 (548)
.... .-...-|.|+.+-.. .+..+.+.++-...+
T Consensus 255 ~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 255 PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP 334 (652)
T ss_pred CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC
Confidence 4310 001111222211110 011122222222221
Q ss_pred C--C------------------------------------ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH
Q 038673 250 Q--R------------------------------------NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTF 291 (548)
Q Consensus 250 ~--~------------------------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 291 (548)
. | ..+.--.++......|+++.|++++...... +
T Consensus 335 ~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~--------~ 406 (652)
T KOG2376|consen 335 GMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLES--------W 406 (652)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--------h
Confidence 1 1 1112223333344455555555555422110 0
Q ss_pred HHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-hhHHHHHHHHHHhcCCHHH
Q 038673 292 IGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKM--------PVEPN-GGVWGALLGACQIHRNPEI 362 (548)
Q Consensus 292 ~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~~~~~~ 362 (548)
.+ .-..+...+.+-..++.++.+.++-+-|-.++.+. ..++. ..+|.-+...-.++|+.++
T Consensus 407 ~s----------s~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 407 KS----------SILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred hh----------hhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 00 00112223445566777787777766566555543 12222 2334444445567899999
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 038673 363 AQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRR 402 (548)
Q Consensus 363 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 402 (548)
|...++++.+.+|++..+...++.+|++. +.+.|..+-+
T Consensus 477 a~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 99999999999999999999999999976 5566666544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.4e-06 Score=85.64 Aligned_cols=189 Identities=16% Similarity=0.239 Sum_probs=118.9
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCC
Q 038673 157 VTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCG 236 (548)
Q Consensus 157 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g 236 (548)
|.+......|.+|+.+++.++.... -..-|..+..-|++.|+++.|.++|-+ ...++-.|+||.+.|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e-----------~~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTE-----------ADLFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHh-----------cchhHHHHHHHhccc
Confidence 3445667788888888888776542 223466677788899999999888743 234566788999999
Q ss_pred CHHHHHHHHhcCCCC--ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHH
Q 038673 237 SIDDAYRIFVGMKQR--NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDH 314 (548)
Q Consensus 237 ~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~ 314 (548)
+|++|.++-.+...| .+..|-+-..-+-.+|++.+|.++|-.... |+.
T Consensus 806 kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-------------------------- 855 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-------------------------- 855 (1636)
T ss_pred cHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH--------------------------
Confidence 999999888877654 345566666667778888888877754322 331
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMPVEPN--GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAG 392 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 392 (548)
-|.+|-+.|..++.+++.++-. |+ ..|-..+..-+-..|+...|+.-|-+.- -|..-.++|-..+
T Consensus 856 ---aiqmydk~~~~ddmirlv~k~h--~d~l~dt~~~f~~e~e~~g~lkaae~~flea~--------d~kaavnmyk~s~ 922 (1636)
T KOG3616|consen 856 ---AIQMYDKHGLDDDMIRLVEKHH--GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG--------DFKAAVNMYKASE 922 (1636)
T ss_pred ---HHHHHHhhCcchHHHHHHHHhC--hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh--------hHHHHHHHhhhhh
Confidence 2455666666666666665542 33 2334444445555566665555444322 3344455555555
Q ss_pred CchHHHHHH
Q 038673 393 MWDDVSRVR 401 (548)
Q Consensus 393 ~~~~a~~~~ 401 (548)
.|++|.++-
T Consensus 923 lw~dayria 931 (1636)
T KOG3616|consen 923 LWEDAYRIA 931 (1636)
T ss_pred hHHHHHHHH
Confidence 555555543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00012 Score=72.54 Aligned_cols=338 Identities=10% Similarity=0.036 Sum_probs=199.3
Q ss_pred HHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHH--HhCCCh
Q 038673 58 LFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAY--ANNGDM 135 (548)
Q Consensus 58 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~--~~~g~~ 135 (548)
=++-+...+++++|.+....++..+ +.|...+..=+-+..+.+.+++|+++.+.-..-.....-.+=.+| .+.++.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccH
Confidence 3455677889999999999999875 667777777777888999999999776654431111111134444 578999
Q ss_pred HHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038673 136 ESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY-VTLVGVISACAQLGVIKYANWVCEIAEGS 214 (548)
Q Consensus 136 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 214 (548)
++|+..++.....|..+...-...+-+.|++++|+++|+.+.+.+.+--. ..-..++.+-.. ..+. .+...
T Consensus 96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~----~~q~v 167 (652)
T KOG2376|consen 96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ----LLQSV 167 (652)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH----HHHhc
Confidence 99999999666556556666667788999999999999999877533211 111222222111 0111 12222
Q ss_pred CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC--------CCC-----hh-----hhHHHHHHHHhcCCHHHHHHHH
Q 038673 215 GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK--------QRN-----VF-----SYSSMILGFAMHGRAHAAIQLF 276 (548)
Q Consensus 215 ~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--------~~~-----~~-----~~~~li~~~~~~g~~~~A~~l~ 276 (548)
...|..+-..+......+...|++.+|+++++... ..| +. .---|.-.+-..|+..+|..++
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 23331233344445566777888888888887762 111 11 1112333455678888888888
Q ss_pred HHHHHcCCCCCHhhHHHHH---HHHhhcC------------------------------------------------C--
Q 038673 277 GDMVKTETKPNGVTFIGVL---TACSHVG------------------------------------------------L-- 303 (548)
Q Consensus 277 ~~m~~~g~~p~~~t~~~ll---~a~~~~~------------------------------------------------~-- 303 (548)
...++.. .+|........ -+..... .
T Consensus 248 ~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~ 326 (652)
T KOG2376|consen 248 VDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQV 326 (652)
T ss_pred HHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 8777652 23321111110 0110000 0
Q ss_pred ----------------------------------------ccCCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHH------
Q 038673 304 ----------------------------------------KCYGVSP-STDHYACMVDLLGRAGCLEEALKMVE------ 336 (548)
Q Consensus 304 ----------------------------------------~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~------ 336 (548)
...+.+- ...+.-.++......|+++.|.+++.
T Consensus 327 r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~ 406 (652)
T KOG2376|consen 327 RELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESW 406 (652)
T ss_pred HHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 0001111 12344455666777888888888887
Q ss_pred --hCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCC---CchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 337 --KMP-VEPNGGVWGALLGACQIHRNPEIAQIAANHLFE----LEPD---KIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 337 --~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
.++ +.-.+.+..+++..+.+.++.+.|..++...+. ..+. ....+..++..-.+.|+-++|..+++++.+
T Consensus 407 ~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 407 KSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred hhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 333 333355566666777777777777777776665 1121 122444455556677899999999888876
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.4e-05 Score=70.63 Aligned_cols=287 Identities=14% Similarity=0.095 Sum_probs=195.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHH-HHHHH
Q 038673 20 WTALIRGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGN-TMIGM 97 (548)
Q Consensus 20 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~ 97 (548)
+++.+..+.+..+++.|++++..-.+. .| +...++.+...|-...++..|-..++++-+. .|...-|. --...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQS 87 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHH
Confidence 677788888999999999999988875 35 6677888888888999999999999998764 34433332 22344
Q ss_pred HHHcCChHHHHHHHccCCCC-CeehHHHHH--HHHHhCCChHHHHHHHccCC-CCChhHHHHHHHHHHHCCChhHHHHHH
Q 038673 98 YVKCGFLGCSRKVFDEMPER-DVVSWTELI--VAYANNGDMESAGGLFNELP-LKDKVAWTAMVTGYVQNAKPREAIEYF 173 (548)
Q Consensus 98 ~~~~g~~~~A~~~~~~m~~~-~~~~~~~li--~~~~~~g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~ 173 (548)
+.+.+.+.+|+++...|.+. +...-..-+ ......+++..+..+.++.+ +.+..+.+.......+.|++++|++-|
T Consensus 88 LY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 55778899999999888763 322211112 23456789999999999998 467778888888888999999999999
Q ss_pred HHHHHC-CCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-----------------CCh---------HhHHH
Q 038673 174 ERMQYA-GVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGP-----------------INN---------VVVGS 226 (548)
Q Consensus 174 ~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p-----------------~~~---------~~~~~ 226 (548)
+...+- |..| ...|+..+.- .+.++...|.+...++++.|+.. ..+ +..+|
T Consensus 168 qaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 168 QAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 988774 4544 4567665544 45688999999999998877541 001 11223
Q ss_pred HHHHHHhcCCCHHHHHHHHhcCCC-----CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhc
Q 038673 227 ALIDMYSKCGSIDDAYRIFVGMKQ-----RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV 301 (548)
Q Consensus 227 ~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 301 (548)
.-...+.+.|+++.|.+.+-.|+. -|++|...+.-.- ..+++.+..+-+.-+... .|-
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPf-------------- 308 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPF-------------- 308 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCC--------------
Confidence 333456678889999999888884 3666655443221 234444444444444432 221
Q ss_pred CCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 302 GLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 302 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
..+|+..++-.||+..-++-|-+++.+-+
T Consensus 309 ---------P~ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 309 ---------PPETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred ---------ChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 23456666677777777777777776543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.7e-05 Score=77.24 Aligned_cols=197 Identities=10% Similarity=0.001 Sum_probs=117.4
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC-----Ch--hhhHHHHH
Q 038673 189 VGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR-----NV--FSYSSMIL 261 (548)
Q Consensus 189 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~ 261 (548)
..+...+...|++++|.+.++...+..+. +...+..+...|...|++++|...+++..+. +. ..|..+..
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~---~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPD---DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 34455667778888888888888776644 6677777888888888888888888776531 21 23456777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCC------HHHHHHHH
Q 038673 262 GFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGC------LEEALKMV 335 (548)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A~~~~ 335 (548)
.+...|+.++|+.++++.... .|.......+. ....++..+...|. ++++....
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~--~~~~~~~~~~~------------------~~~~~l~~~~~~g~~~~~~~w~~~~~~~ 254 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAP--SAESDPALDLL------------------DAASLLWRLELAGHVDVGDRWEDLADYA 254 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhcc--ccCCChHHHHh------------------hHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 788888888888888887542 22111110000 00011222222332 22222221
Q ss_pred HhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-C---C-----CchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 336 EKM-PVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELE-P---D-----KIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 336 ~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p---~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
... +.............++...|+.+.|...++.+.... . . ........+.++...|++++|.+.+....
T Consensus 255 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 255 AWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred HhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111 110111222245567788889999999998877622 1 1 23345566677889999999999998876
Q ss_pred hCC
Q 038673 406 MTG 408 (548)
Q Consensus 406 ~~g 408 (548)
..+
T Consensus 335 ~~a 337 (355)
T cd05804 335 DDL 337 (355)
T ss_pred HHH
Confidence 544
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.3e-07 Score=88.42 Aligned_cols=206 Identities=13% Similarity=0.098 Sum_probs=138.8
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHH
Q 038673 197 QLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAI 273 (548)
Q Consensus 197 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 273 (548)
+.|++..|.-.|+..++..+. +...|.-|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~---haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQ---HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred hcCCchHHHHHHHHHHhhChH---HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 445555555555555555533 555555555555555555555555555443 23334444444555555555555
Q ss_pred HHHHHHHHcC-------------------CCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 038673 274 QLFGDMVKTE-------------------TKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKM 334 (548)
Q Consensus 274 ~l~~~m~~~g-------------------~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 334 (548)
..++.-+... -.++...+..+..-+.... ...+.++|+.++..|.-+|--.|.+++|.+.
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa-~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAA-RQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHH-HhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 5555543321 0122222322222222221 1223357788899999999999999999999
Q ss_pred HHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 335 VEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 335 ~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
|+..- ++|+ ...||-|-..++...+.++|+.+|.+++++.|....+...|+-.|...|.+++|.+.|-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99874 7786 788999999999999999999999999999999999999999999999999999998766543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00012 Score=72.66 Aligned_cols=303 Identities=11% Similarity=-0.010 Sum_probs=183.7
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCChhh-HHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHH-
Q 038673 17 PFLWTALIRGYILQGHLKDSISLYCSMRREGI-GPVSFT-LSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNT- 93 (548)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~- 93 (548)
...|..+...+...|+++++...+....+... .++... .......+...|+++.+..+++..++.. |.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKLH 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHh
Confidence 34567777777788888888777777665321 122211 1122233567799999999999998874 556555552
Q ss_pred --HHHHHHHcCChHHHHHHHccCCCCCe---ehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCC
Q 038673 94 --MIGMYVKCGFLGCSRKVFDEMPERDV---VSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAK 165 (548)
Q Consensus 94 --li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~ 165 (548)
+.......+..+.+.+.++.....+. .....+...+...|++++|...+++.. +.+...+..+...|...|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 22222335666777777765333222 233345568889999999999998875 3356778888999999999
Q ss_pred hhHHHHHHHHHHHCCC-CCCH--hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHH-H--HHHHHHhcCCCHH
Q 038673 166 PREAIEYFERMQYAGV-ETDY--VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVG-S--ALIDMYSKCGSID 239 (548)
Q Consensus 166 ~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-~--~li~~y~~~g~~~ 239 (548)
+++|..++++.....- .|+. ..+..+...+...|+.++|..+++.+......+ ...... + .++.-+...|..+
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAES-DPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCC-ChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999998876431 2332 235567778899999999999999986544311 122211 1 3334444444322
Q ss_pred HHHHH---Hhc---CCCCChhhhH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcC
Q 038673 240 DAYRI---FVG---MKQRNVFSYS--SMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPS 311 (548)
Q Consensus 240 ~A~~~---~~~---~~~~~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~ 311 (548)
.+.+. ... ........++ ....++...|+.++|..+++.+......++..-+ ....
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----------------~~~~ 306 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQ----------------PARD 306 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhh----------------hHHh
Confidence 22222 111 1111112222 4556778889999999999998764322110000 0001
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKM 338 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m 338 (548)
+.......-++.+.|+.++|.+.+...
T Consensus 307 ~~~~~l~A~~~~~~g~~~~A~~~L~~a 333 (355)
T cd05804 307 VGLPLAEALYAFAEGNYATALELLGPV 333 (355)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 122233334556788888888877654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-05 Score=81.00 Aligned_cols=40 Identities=20% Similarity=0.162 Sum_probs=33.2
Q ss_pred CCCCCcEEEEecccccCCCcchhhhhhhhcCceEEEecCC
Q 038673 493 TSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNM 532 (548)
Q Consensus 493 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (548)
|..|..++-++.|-..||-...+-|.+...+|||.+..+|
T Consensus 1169 TQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAAN 1208 (1416)
T KOG3617|consen 1169 TQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAAN 1208 (1416)
T ss_pred hhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhh
Confidence 4567777788888899999998889999999999887655
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.1e-08 Score=58.57 Aligned_cols=34 Identities=26% Similarity=0.538 Sum_probs=31.1
Q ss_pred CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 306 YGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 306 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
.|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788889999999999999999999999999985
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-05 Score=72.52 Aligned_cols=286 Identities=12% Similarity=0.087 Sum_probs=173.2
Q ss_pred HHcCChHHHHHHHccCCCC---CeehHHHHHHHHHhCCChHHHHHHHccCCC--CChhHHHH-HHHHHHHCCChhHHHHH
Q 038673 99 VKCGFLGCSRKVFDEMPER---DVVSWTELIVAYANNGDMESAGGLFNELPL--KDKVAWTA-MVTGYVQNAKPREAIEY 172 (548)
Q Consensus 99 ~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~~~~g~~~~A~~l 172 (548)
.+..++++|.+++..-.++ +....+.+..+|....++..|-..++++.. |...-|.. -...+-+.+.+..|+++
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3344444444444433331 222333444444444455555555544431 21111211 12344566777788887
Q ss_pred HHHHHHCCCCCCHhhHHHHHHH--HHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 038673 173 FERMQYAGVETDYVTLVGVISA--CAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ 250 (548)
Q Consensus 173 ~~~m~~~g~~p~~~t~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 250 (548)
...|... |+...-..-+.+ ....+++..+..+.++.-.. .+..+.+...-...+.|+++.|.+-|+...+
T Consensus 101 ~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-----n~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 101 AFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-----NEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred HHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-----CccchhccchheeeccccHHHHHHHHHHHHh
Confidence 7777542 332222222222 23456777777776655321 2555666666777789999999999988775
Q ss_pred ----CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCC------cC-------HH
Q 038673 251 ----RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVS------PS-------TD 313 (548)
Q Consensus 251 ----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~------p~-------~~ 313 (548)
.....||.-+ +..+.|+++.|+++..++++.|++-.... ..|+...|+. |- +.
T Consensus 173 vsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPEl---------gIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 173 VSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPEL---------GIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred hcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCcc---------CccceeccCchhcccchHHHHHHHHHH
Confidence 3456677655 45567899999999999999887633221 1111111111 11 22
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 038673 314 HYACMVDLLGRAGCLEEALKMVEKMP----VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389 (548)
Q Consensus 314 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 389 (548)
.+|.-...+.+.|+++.|.+-+..|| ...|++|...+.-. -..+++..+.+-+.-+++++|-.+.++..++-.|+
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyC 321 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYC 321 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 34444455678899999999999997 44677777665422 23456777777788888999988889999999999
Q ss_pred HcCCchHHHHHHHH
Q 038673 390 SAGMWDDVSRVRRL 403 (548)
Q Consensus 390 ~~g~~~~a~~~~~~ 403 (548)
+..-++-|..++.+
T Consensus 322 KNeyf~lAADvLAE 335 (459)
T KOG4340|consen 322 KNEYFDLAADVLAE 335 (459)
T ss_pred hhHHHhHHHHHHhh
Confidence 99999999888753
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.4e-05 Score=70.39 Aligned_cols=297 Identities=13% Similarity=0.061 Sum_probs=183.7
Q ss_pred HHHHHHHcCChHHHHHHHccCCCCCeehHHHHH---HHHHhCCChHHHHHHHccCCCCChhHHHHHH---HHHHHCCChh
Q 038673 94 MIGMYVKCGFLGCSRKVFDEMPERDVVSWTELI---VAYANNGDMESAGGLFNELPLKDKVAWTAMV---TGYVQNAKPR 167 (548)
Q Consensus 94 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~ 167 (548)
|-+.+...|++.+|+.-|....+-|+..|.++- ..|...|+...|+.-|.++.+-.+..+.+-+ ..+.+.|.++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 334444455555555555555555554444433 2344555555555444444322222222222 2345566666
Q ss_pred HHHHHHHHHHHCCCC------------CCH--hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHh
Q 038673 168 EAIEYFERMQYAGVE------------TDY--VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYS 233 (548)
Q Consensus 168 ~A~~l~~~m~~~g~~------------p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~ 233 (548)
+|..=|+...+.... +-. ......+..+...|+...+......+++..+ .+...+..-..+|.
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~---Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP---WDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc---chhHHHHHHHHHHH
Confidence 666666665543210 000 1123334455667888888888888887654 48999999999999
Q ss_pred cCCCHHHHHHHHhc---CCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCc
Q 038673 234 KCGSIDDAYRIFVG---MKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSP 310 (548)
Q Consensus 234 ~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p 310 (548)
..|++..|..=+.. +...++.+.--+-..+...|+.+.++...++-++ +.||....-..-...-
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklk----------- 267 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLK----------- 267 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHH-----------
Confidence 99999988765554 4456777777777788888999999888888777 6777642111110000
Q ss_pred CHHHHHHH--HHHHHHcCCHHHHHHHHHhC-CCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHH
Q 038673 311 STDHYACM--VDLLGRAGCLEEALKMVEKM-PVEPN-----GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYI 382 (548)
Q Consensus 311 ~~~~~~~l--i~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 382 (548)
..--.| +....+.+++.++++-.++. ...|. ...+..+-.++...+++.+|++...++++.+|++..++-
T Consensus 268 --Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~ 345 (504)
T KOG0624|consen 268 --KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLC 345 (504)
T ss_pred --HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHH
Confidence 000011 12234567777777766654 34454 223444556778888999999999999999999988888
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 383 ILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 383 ~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
--+.+|.-...+++|+.=++...+.+
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 88888888888999988888776543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00016 Score=72.25 Aligned_cols=338 Identities=12% Similarity=0.088 Sum_probs=238.0
Q ss_pred hhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCChHHH
Q 038673 62 CTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---RDVVSWTELIVAYANNGDMESA 138 (548)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A 138 (548)
|-..+++..+.+..+.+++. ++....+.....-.+...|+-++|......-.. ++.+.|..+.-.+....++++|
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHH
Confidence 34567788888888888884 455555544444445667899999888876655 5678899999999999999999
Q ss_pred HHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038673 139 GGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET-DYVTLVGVISACAQLGVIKYANWVCEIAEGS 214 (548)
Q Consensus 139 ~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 214 (548)
.+.|.... +.|...|.-+.-.-++.++++.......++.+. .| ....|..+..+.--.|+...|..+.+...+.
T Consensus 95 iKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 95 IKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998754 447778888888888889999888888877765 34 4456777777788889999999999998877
Q ss_pred CCCCCChHhHHHHH------HHHHhcCCCHHHHHHHHhcCCCC---ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 038673 215 GFGPINNVVVGSAL------IDMYSKCGSIDDAYRIFVGMKQR---NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETK 285 (548)
Q Consensus 215 ~~~p~~~~~~~~~l------i~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 285 (548)
...+ ++...+.-. .....+.|.++.|.+.+...... ....-.+....+.+.++.++|..++..++. ..
T Consensus 173 ~~~~-~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~--rn 249 (700)
T KOG1156|consen 173 QNTS-PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE--RN 249 (700)
T ss_pred hccC-CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh--hC
Confidence 6422 243333322 33456788899999888776532 222233455667889999999999999998 57
Q ss_pred CCHhhHHHHHHHHh-h-cCC---------------------------------------------ccCCCCcCHHHHHHH
Q 038673 286 PNGVTFIGVLTACS-H-VGL---------------------------------------------KCYGVSPSTDHYACM 318 (548)
Q Consensus 286 p~~~t~~~ll~a~~-~-~~~---------------------------------------------~~~~~~p~~~~~~~l 318 (548)
||..-|...+..+. + .++ ...|+++ ++..+
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl 326 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDL 326 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhh
Confidence 88777765554444 1 111 2223222 23333
Q ss_pred HHHHHHcCCHHH----HHHHHHhCC-------------CCCChhHHHHHH--HHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 319 VDLLGRAGCLEE----ALKMVEKMP-------------VEPNGGVWGALL--GACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 319 i~~~~~~g~~~~----A~~~~~~m~-------------~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
...|-.-...+- +..+...+. -.|....|.... ..+-..|+++.|....+.++...|.-+.
T Consensus 327 ~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliE 406 (700)
T KOG1156|consen 327 RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIE 406 (700)
T ss_pred HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHH
Confidence 333322111111 222222221 246777776654 5678899999999999999999999888
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 380 NYIILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 380 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
.|..-++++.-+|.+++|...+++..+.+.
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 999999999999999999999999887654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.1e-05 Score=74.22 Aligned_cols=393 Identities=11% Similarity=0.062 Sum_probs=218.5
Q ss_pred CCcchHHHhcc---CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhccCCcHHHHHHHH
Q 038673 1 MDSFPRLVFEQ---VKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPV-SFTLSALFKACTEVLDVSLGQQIHA 76 (548)
Q Consensus 1 ~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~ 76 (548)
|+++|...|-+ +.++|.+.|+.=..+|+..|++++|++=-.+-++ +.|+ .-.|+....++.-.|++++|..-|.
T Consensus 17 d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~ 94 (539)
T KOG0548|consen 17 DFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAYS 94 (539)
T ss_pred cHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHHH
Confidence 46677777743 3356777888888888888888888776655555 4554 4567788888888888888888888
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHHcCChHHHH-HHHccC------CC-C------CeehHHHHHHHHHhC----------
Q 038673 77 QTILLGGFTSDLYVGNTMIGMYVKCGFLGCSR-KVFDEM------PE-R------DVVSWTELIVAYANN---------- 132 (548)
Q Consensus 77 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m------~~-~------~~~~~~~li~~~~~~---------- 132 (548)
.-++.. +.|...++.|..++. .+.+. +.|..- .. | ....|..++..+-++
T Consensus 95 ~GL~~d--~~n~~L~~gl~~a~~----~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 95 EGLEKD--PSNKQLKTGLAQAYL----EDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHhhcC--CchHHHHHhHHHhhh----HHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 877764 667777777777771 11111 111100 00 0 011122222221111
Q ss_pred CChHHHHHHHccCCCCChhHHHHHHHHHH-HCCChh----HHHHHHHHHHHC-CCCCCHhhHHHHHHHHHccCChhHHHH
Q 038673 133 GDMESAGGLFNELPLKDKVAWTAMVTGYV-QNAKPR----EAIEYFERMQYA-GVETDYVTLVGVISACAQLGVIKYANW 206 (548)
Q Consensus 133 g~~~~A~~~f~~m~~~~~~~~~~li~~~~-~~g~~~----~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~ 206 (548)
.++..|...+...... .....-.... ....+. .......++.+. ..+.-..-...+.++..+..+++.+.+
T Consensus 169 ~r~m~a~~~l~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDEL---LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred HHHHHHHHHHhcCccc---cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 1111111111110000 0000000000 000000 000000000000 000012234556666666666777777
Q ss_pred HHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCCh---hhhHH-------HHHHHHhcCCHHHHHHHH
Q 038673 207 VCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNV---FSYSS-------MILGFAMHGRAHAAIQLF 276 (548)
Q Consensus 207 ~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~-------li~~~~~~g~~~~A~~l~ 276 (548)
-+....... . +..-++.....|...|.+......-+...+..- .-|+. +-.+|...++++.|+..|
T Consensus 246 ~y~~a~el~-~---~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 246 HYAKALELA-T---DITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHhHh-h---hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 776666655 4 556666666667766666665555444332211 11111 223455566777777777
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHH
Q 038673 277 GDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTD-HYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGA 353 (548)
Q Consensus 277 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~ 353 (548)
.+....-..||..+=.....--.+......-+.|... -.-.=...+.+.|++.+|+..|.++. ..|+ ...|...--+
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac 401 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAAC 401 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 7766655555544332222221111111111222221 11112456678899999999999874 4565 7888888899
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 354 CQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
+.+.|.+..|..-.+..++++|+....|..-+.++....+|++|.+.|.+-.+..
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999998776543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.9e-07 Score=83.37 Aligned_cols=248 Identities=13% Similarity=0.066 Sum_probs=159.5
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCh
Q 038673 25 RGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFL 104 (548)
Q Consensus 25 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 104 (548)
+-+.-.|.+..++.-.+ .....-..+......+.+++...|..+.+. ..+.+. -.|.......+...+...++-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~--~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS--SSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT--SSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC--CChhHHHHHHHHHHHhCccch
Confidence 44455688888886666 322211123445566777888888765432 333332 356666555555544443455
Q ss_pred HHHHHHHccCC-CCCe---ehH-HHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHC
Q 038673 105 GCSRKVFDEMP-ERDV---VSW-TELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYA 179 (548)
Q Consensus 105 ~~A~~~~~~m~-~~~~---~~~-~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 179 (548)
+.+..-+++.. ++.. .++ ......+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666665443 3211 122 22234566789999999888775 56777778888999999999999999999865
Q ss_pred CCCCCHhhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CC
Q 038673 180 GVETDYVTLVGVISACAQ----LGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RN 252 (548)
Q Consensus 180 g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~ 252 (548)
..| .+...+..++.. ...+..|..+|+++.+. +. .++.+.+.+..++...|++++|.+++.+... .+
T Consensus 161 --~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~--~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 161 --DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FG--STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp --SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred --CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 333 455555555433 34689999999997665 33 4888899999999999999999999988765 34
Q ss_pred hhhhHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCH
Q 038673 253 VFSYSSMILGFAMHGRA-HAAIQLFGDMVKTETKPNG 288 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~ 288 (548)
..+.-.+|......|+. +.+.+++.++.. ..|+.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h 269 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNH 269 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTS
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCC
Confidence 55666677777778887 667788888887 34553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00069 Score=69.30 Aligned_cols=320 Identities=15% Similarity=0.120 Sum_probs=216.5
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCChHHHHHHHccCCCC-----ChhHHHH
Q 038673 84 FTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---RDVVSWTELIVAYANNGDMESAGGLFNELPLK-----DKVAWTA 155 (548)
Q Consensus 84 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----~~~~~~~ 155 (548)
+.-|..+|..|.-+...+|+++.+-+.|++... .....|+.+-..|...|.-..|..++++-..+ |+..+-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 667888999999999999999999999998765 45668999999999999999999998876532 2333333
Q ss_pred HHHHHH-HCCChhHHHHHHHHHHH--CC----CCCCHhhHHHHHHHHHcc-----------CChhHHHHHHHHHHHcCCC
Q 038673 156 MVTGYV-QNAKPREAIEYFERMQY--AG----VETDYVTLVGVISACAQL-----------GVIKYANWVCEIAEGSGFG 217 (548)
Q Consensus 156 li~~~~-~~g~~~~A~~l~~~m~~--~g----~~p~~~t~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~ 217 (548)
.-..|. +.+..++++.+-.+... .+ +.| ..|..+.-+|+.. ....++.+.++..++.+..
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~--~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKP--RGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhh--hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 333333 34777777777666654 11 233 2333333333321 1234677778888777755
Q ss_pred CCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC----CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc-CC--------
Q 038673 218 PINNVVVGSALIDMYSKCGSIDDAYRIFVGMK----QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT-ET-------- 284 (548)
Q Consensus 218 p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~-------- 284 (548)
|+.+.--+.--|+..++++.|.+...+.. ..++..|.-+.-.+...+++.+|+.+.+..... |.
T Consensus 477 ---dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 477 ---DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred ---CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 55555556667888899999998887665 357889999999999999999999998876653 11
Q ss_pred ----------CCCHhhHHHHHHHHhh---------cC--------C---------------------c--cCCCC-----
Q 038673 285 ----------KPNGVTFIGVLTACSH---------VG--------L---------------------K--CYGVS----- 309 (548)
Q Consensus 285 ----------~p~~~t~~~ll~a~~~---------~~--------~---------------------~--~~~~~----- 309 (548)
.--..|...++.-.-. .| + . .....
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 0011233333333220 11 1 0 00000
Q ss_pred c--------C------HHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038673 310 P--------S------TDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFEL 373 (548)
Q Consensus 310 p--------~------~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 373 (548)
| + ...|....+.+.+.++.++|...+.+.. +.| ....|...-..+...|..++|.+.|...+.+
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 0 1 1234455667777788888876666664 333 3555555556677889999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCCchHHHH--HHHHHHhCC
Q 038673 374 EPDKIGNYIILSNIYASAGMWDDVSR--VRRLLKMTG 408 (548)
Q Consensus 374 ~p~~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~g 408 (548)
+|+++.....++.++.+.|+-.-|.. ++..+.+.+
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 99999999999999999998777776 777775533
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-07 Score=57.22 Aligned_cols=32 Identities=34% Similarity=0.462 Sum_probs=26.4
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHccCC
Q 038673 84 FTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMP 115 (548)
Q Consensus 84 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 115 (548)
+.||..+||+||++|++.|++++|.++|++|+
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 78888888888888888888888888888774
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.5e-05 Score=73.19 Aligned_cols=224 Identities=10% Similarity=0.030 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYV-TLVGVISACAQLG-VIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
++..+-..+...++.++|+.+..++.+. .|+.. .+..--.++...| +++++...++.+.+...+ +..+|+...
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk---nyqaW~~R~ 113 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK---NYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc---chHHhHHHH
Confidence 4455555667778899999999988875 45544 3444444555666 578999999999888766 777787666
Q ss_pred HHHhcCCCH--HHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCc
Q 038673 230 DMYSKCGSI--DDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLK 304 (548)
Q Consensus 230 ~~y~~~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 304 (548)
-.+.+.|.. +++..+++++.+ +|..+|+-..-.+...|+++++++.+.++++.....
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N------------------ 175 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN------------------ 175 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc------------------
Confidence 666666653 667777777764 567888888888888899999999999999854332
Q ss_pred cCCCCcCHHHHHHHHHHHHHc---CC----HHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhc----CCHHHHHHHHHHHh
Q 038673 305 CYGVSPSTDHYACMVDLLGRA---GC----LEEALKMVEKM-PVEPN-GGVWGALLGACQIH----RNPEIAQIAANHLF 371 (548)
Q Consensus 305 ~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~----~~~~~a~~~~~~~~ 371 (548)
...|+.....+.+. |. .++++++..++ ...|+ ...|+.+...+... +...+|...+..+.
T Consensus 176 -------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 176 -------NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred -------hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 22344333333332 22 24566666433 45565 78898888888773 34567888999988
Q ss_pred hcCCCCchhHHHHHHHHHHcC------------------CchHHHHHHHHHH
Q 038673 372 ELEPDKIGNYIILSNIYASAG------------------MWDDVSRVRRLLK 405 (548)
Q Consensus 372 ~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 405 (548)
..+|.++.+...|+..|+... ..++|.++++.+.
T Consensus 249 ~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 249 SKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred cccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 889999999999999998743 2366888888773
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.2e-05 Score=84.57 Aligned_cols=211 Identities=14% Similarity=0.078 Sum_probs=170.2
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--------CCeehHHHHHHHHHhCCChHHHHHHHccCC
Q 038673 75 HAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--------RDVVSWTELIVAYANNGDMESAGGLFNELP 146 (548)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 146 (548)
|+.++... |.+...|-..|......+++++|++++++... --...|.++++.-...|.-+...++|++..
T Consensus 1447 ferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 44444443 56677888888888999999999999888764 123478888888888888888888998876
Q ss_pred CC-C-hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhH
Q 038673 147 LK-D-KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVV 224 (548)
Q Consensus 147 ~~-~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 224 (548)
+- | ...|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++.+.-+.- .....
T Consensus 1525 qycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~-eHv~~ 1602 (1710)
T KOG1070|consen 1525 QYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ-EHVEF 1602 (1710)
T ss_pred HhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh-hhHHH
Confidence 43 3 457889999999999999999999999874 33456678888888899988899999999988765431 35667
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh
Q 038673 225 GSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGV 289 (548)
Q Consensus 225 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 289 (548)
..-.+.+-.++|+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-..
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 77788888899999999999998874 356789999999999999999999999999988777654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-05 Score=71.76 Aligned_cols=149 Identities=9% Similarity=0.121 Sum_probs=108.8
Q ss_pred HHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCC
Q 038673 228 LIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG 307 (548)
Q Consensus 228 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 307 (548)
-+..|...|+++.+....+.+..+. ..+...++.++++..++...+ ..|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~-------------------- 71 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQ-------------------- 71 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCC--------------------
Confidence 3456777777777655443322221 012225566777777777666 3344
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHH-HHhcCC--HHHHHHHHHHHhhcCCCCchhHH
Q 038673 308 VSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGA-CQIHRN--PEIAQIAANHLFELEPDKIGNYI 382 (548)
Q Consensus 308 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~-~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~ 382 (548)
+...|..+...|...|++++|...|++.. ..|+ ...+..+..+ +...|+ .++|.++++++++.+|+++.++.
T Consensus 72 ---~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~ 148 (198)
T PRK10370 72 ---NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALM 148 (198)
T ss_pred ---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHH
Confidence 55678888899999999999999998774 5565 6666666665 356666 59999999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 383 ILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 383 ~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
.++..+...|++++|...++++.+..-
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 149 LLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999876543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00032 Score=78.90 Aligned_cols=324 Identities=13% Similarity=0.012 Sum_probs=199.6
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC----CC---e-----ehHHHHHHHHHh
Q 038673 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE----RD---V-----VSWTELIVAYAN 131 (548)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~---~-----~~~~~li~~~~~ 131 (548)
..|++..+....+.+-... ...+..........+...|++++|...++...+ .+ . .....+...+..
T Consensus 386 ~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 386 NQGELSLLEECLNALPWEV-LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred hcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 4456665555554431111 112233334445556678899998888765432 11 1 111222344568
Q ss_pred CCChHHHHHHHccCC----CCCh----hHHHHHHHHHHHCCChhHHHHHHHHHHHCC--C-CCC--HhhHHHHHHHHHcc
Q 038673 132 NGDMESAGGLFNELP----LKDK----VAWTAMVTGYVQNAKPREAIEYFERMQYAG--V-ETD--YVTLVGVISACAQL 198 (548)
Q Consensus 132 ~g~~~~A~~~f~~m~----~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~-~p~--~~t~~~ll~~~~~~ 198 (548)
.|++++|...+++.. ..+. ..++.+...+...|++++|...+.+..... . .+. ..++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 899999998877643 2222 345666677788999999999998876421 1 111 23445556677888
Q ss_pred CChhHHHHHHHHHHHc----CCC--CCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC------C--ChhhhHHHHHHHH
Q 038673 199 GVIKYANWVCEIAEGS----GFG--PINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ------R--NVFSYSSMILGFA 264 (548)
Q Consensus 199 g~~~~a~~~~~~~~~~----~~~--p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~ 264 (548)
|+++.|...+++.... +.. | .....+..+...+...|++++|...+.+... + ....+..+...+.
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLP-MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999988876542 221 1 1334455667777888999999888877642 1 1233444566778
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCC--
Q 038673 265 MHGRAHAAIQLFGDMVKTETKPN-GVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVE-- 341 (548)
Q Consensus 265 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 341 (548)
..|+.++|...+.+.....-... ...+. .......+..+...|+.+.|.+.+......
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~ 684 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWI-------------------ANADKVRLIYWQMTGDKEAAANWLRQAPKPEF 684 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHh-------------------hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC
Confidence 89999999999888765211100 00000 000111224455689999999998776411
Q ss_pred CChh----HHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 342 PNGG----VWGALLGACQIHRNPEIAQIAANHLFELE------PDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 342 p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
.... .+..+..++...|+.++|...++++.+.. +....++..++.+|.+.|+.++|...+.+..+..
T Consensus 685 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 685 ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 1111 13345567888999999999999887732 1223467788889999999999999998887644
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00013 Score=67.73 Aligned_cols=225 Identities=16% Similarity=0.141 Sum_probs=144.1
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH-----HccCChhHHHHHHHHHHHcCCCCCChHhHH
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISAC-----AQLGVIKYANWVCEIAEGSGFGPINNVVVG 225 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 225 (548)
..--.++--|.++++..+|..+.+++.- ..|-......+..+. .....+.-|.+.|+.+-.++... .+..-.
T Consensus 286 EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ec-DTIpGR 362 (557)
T KOG3785|consen 286 EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALEC-DTIPGR 362 (557)
T ss_pred HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccc-ccccch
Confidence 3445566678899999999998877632 344444333333322 22234567778887776666553 233334
Q ss_pred HHHHHHHhcCCCHHHHHHHHhcCCC----CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhc
Q 038673 226 SALIDMYSKCGSIDDAYRIFVGMKQ----RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV 301 (548)
Q Consensus 226 ~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 301 (548)
.++...+.-..++++..-.++.+.. .|...+| +..+++..|++.+|+++|-+.....+ -|..+|
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y---------- 430 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILY---------- 430 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHH----------
Confidence 5555556666677888877777763 3444444 77889999999999999976644212 233333
Q ss_pred CCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCCCchh
Q 038673 302 GLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALL-GACQIHRNPEIAQIAANHLFELEPDKIGN 380 (548)
Q Consensus 302 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 380 (548)
...|...|.+++.++-|++++-++....+..+.-.+| .-|-+.+.+=-|.++|+.+..++|... .
T Consensus 431 -------------~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE-n 496 (557)
T KOG3785|consen 431 -------------KSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE-N 496 (557)
T ss_pred -------------HHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc-c
Confidence 2345678899999999999998887444456666666 678888998889999999888888643 2
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCCCccCC
Q 038673 381 YIILSNIYASAGMWDDVSRVRRLLKMTGLKKNP 413 (548)
Q Consensus 381 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 413 (548)
| .|+-....-+|..+....-.|.|
T Consensus 497 W---------eGKRGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 497 W---------EGKRGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred c---------CCccchHHHHHHHHHcCCCCCCc
Confidence 2 23333444555555544444433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00041 Score=64.22 Aligned_cols=201 Identities=10% Similarity=0.023 Sum_probs=134.9
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc
Q 038673 155 AMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK 234 (548)
Q Consensus 155 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~ 234 (548)
..+..+...|+...|+.....+.+.. +.|...+..-..+|...|.+..|..=++.+.+..-. +.....-+-..+..
T Consensus 160 ~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D---nTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 160 QQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD---NTEGHYKISQLLYT 235 (504)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc---chHHHHHHHHHHHh
Confidence 34455667788888888888887652 456666666777788888888887777776666544 66666677777888
Q ss_pred CCCHHHHHHHHhcCCCCChh------hhHHH---------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 038673 235 CGSIDDAYRIFVGMKQRNVF------SYSSM---------ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACS 299 (548)
Q Consensus 235 ~g~~~~A~~~~~~~~~~~~~------~~~~l---------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 299 (548)
.|+.+.++...++..+-|+. .|-.+ +......+++.++++-.+...+. .|....+
T Consensus 236 vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~i-------- 305 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMI-------- 305 (504)
T ss_pred hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccce--------
Confidence 88888888887776653321 11111 11234456666666666665553 2221110
Q ss_pred hcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038673 300 HVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDK 377 (548)
Q Consensus 300 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 377 (548)
....+..+-..+...|++.+|++.-.+.. +.|| +.++---..+|.....++.|+.-|+.+.+.++++
T Consensus 306 -----------r~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 306 -----------RYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred -----------eeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 11224445566778899999998877664 5566 6677666788888999999999999999999988
Q ss_pred chh
Q 038673 378 IGN 380 (548)
Q Consensus 378 ~~~ 380 (548)
..+
T Consensus 375 ~~~ 377 (504)
T KOG0624|consen 375 TRA 377 (504)
T ss_pred HHH
Confidence 644
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.8e-05 Score=80.13 Aligned_cols=180 Identities=12% Similarity=0.095 Sum_probs=122.9
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc
Q 038673 155 AMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK 234 (548)
Q Consensus 155 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~ 234 (548)
.++.......++.-+..+...|... .-+...+..+..+|-+.|+.+++..+++++++..+. ++.+.|.+...|+.
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~---n~~aLNn~AY~~ae 162 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD---NPEIVKKLATSYEE 162 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHH
Confidence 3444444455554444445555543 334457788888999999999999999999998844 99999999999999
Q ss_pred CCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH-HHHHHHHhhcCCccCCCCcCHH
Q 038673 235 CGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTF-IGVLTACSHVGLKCYGVSPSTD 313 (548)
Q Consensus 235 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~~~~~p~~~ 313 (548)
. ++++|.+++.+.. ..|...+++.++.++|.++.. ..|+...+ ..++..
T Consensus 163 ~-dL~KA~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~k---------------- 212 (906)
T PRK14720 163 E-DKEKAITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERK---------------- 212 (906)
T ss_pred h-hHHHHHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHH----------------
Confidence 9 9999998877653 347778899999999999988 45554432 111111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 038673 314 HYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389 (548)
Q Consensus 314 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 389 (548)
. ...+....-..++--+...|...++++.+..+++.+++.+|.|..+..-++..|.
T Consensus 213 --------i------------~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 --------V------------LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred --------H------------HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 0 1111112234455555566777777777777777777777777767777776665
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0002 Score=73.30 Aligned_cols=261 Identities=11% Similarity=0.097 Sum_probs=158.5
Q ss_pred hccCCCCCcchHHHHHH--HHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCC---
Q 038673 9 FEQVKYKNPFLWTALIR--GYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGG--- 83 (548)
Q Consensus 9 f~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--- 83 (548)
|-.+..=|..+-.+|+. .|+.-|+.+.|.+-.+-++ ....|..+.+.|.+..+++-|+-.+..|....+
T Consensus 718 Fvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRA 791 (1416)
T KOG3617|consen 718 FVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARA 791 (1416)
T ss_pred hcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHH
Confidence 44444446666666664 3667788888877766554 335678888888887777777766665533210
Q ss_pred -----CCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCC-ChhHHHHHH
Q 038673 84 -----FTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLK-DKVAWTAMV 157 (548)
Q Consensus 84 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li 157 (548)
-.++ ..-....-.-...|.+++|..+|.+.++ |..|=..|...|.+++|.++-+.-..- =..||..-.
T Consensus 792 lR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA 865 (1416)
T KOG3617|consen 792 LRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYA 865 (1416)
T ss_pred HHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHH
Confidence 1121 2222222233456777888777776654 333445566677777777765432111 122454455
Q ss_pred HHHHHCCChhHHHHHHHHH----------HHCC---------CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 038673 158 TGYVQNAKPREAIEYFERM----------QYAG---------VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGP 218 (548)
Q Consensus 158 ~~~~~~g~~~~A~~l~~~m----------~~~g---------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p 218 (548)
.-+-..++.+.|++.|++- .... -..|...|.....-.-..|+.+.|..+|..+.
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~------ 939 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK------ 939 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh------
Confidence 5555556666666666542 1111 01233444455555566788888888876543
Q ss_pred CChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038673 219 INNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTAC 298 (548)
Q Consensus 219 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 298 (548)
-|-+++...|-.|+.++|-++-++- .|.....-+...|-..|++.+|+..|.+.+ +|...|.-|
T Consensus 940 -----D~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlc 1003 (1416)
T KOG3617|consen 940 -----DYFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLC 1003 (1416)
T ss_pred -----hhhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHH
Confidence 3556777777788888888877664 455666678888999999999999998865 356666666
Q ss_pred hhcCC
Q 038673 299 SHVGL 303 (548)
Q Consensus 299 ~~~~~ 303 (548)
-..++
T Consensus 1004 KEnd~ 1008 (1416)
T KOG3617|consen 1004 KENDM 1008 (1416)
T ss_pred HhcCH
Confidence 55554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.4e-06 Score=69.10 Aligned_cols=120 Identities=11% Similarity=-0.038 Sum_probs=79.9
Q ss_pred HHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHH
Q 038673 244 IFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLG 323 (548)
Q Consensus 244 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~ 323 (548)
+|++..+-++..+......+...|++++|...|+.... +.|+ +...|..+..++.
T Consensus 15 ~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~-----------------------~~~a~~~lg~~~~ 69 (144)
T PRK15359 15 ILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVM--AQPW-----------------------SWRAHIALAGTWM 69 (144)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCC-----------------------cHHHHHHHHHHHH
Confidence 33443333444455556666777777777777777765 3444 3345667777777
Q ss_pred HcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 038673 324 RAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIY 388 (548)
Q Consensus 324 ~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 388 (548)
+.|++++|...|++.. ..| +...|..+..++...|+.++|...++..++..|+++..+.....+.
T Consensus 70 ~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 70 MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 7778888877777763 344 3666677777777788888888888888888888776666555444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0013 Score=69.08 Aligned_cols=336 Identities=14% Similarity=0.088 Sum_probs=189.8
Q ss_pred HHHHHHHHCCCC--CChhhHHHHHHHhhccCCcHHHHHHHHHHHHhC-CCCCChhHHHHHHHHHHHcCChHHHHHHHccC
Q 038673 38 SLYCSMRREGIG--PVSFTLSALFKACTEVLDVSLGQQIHAQTILLG-GFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEM 114 (548)
Q Consensus 38 ~~~~~m~~~g~~--p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 114 (548)
.+.++..+.+++ .|+...+...+|+...+-..+-.++++.++-.. .+..+....|.|+-.-.+. +.....+..+++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rL 1046 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHh
Confidence 344444444332 245555666666666666666666666654322 1223333444444433333 333344444444
Q ss_pred CCCCeehHHHHHHHHHhCCChHHHHHHHccCC-------------------------CCChhHHHHHHHHHHHCCChhHH
Q 038673 115 PERDVVSWTELIVAYANNGDMESAGGLFNELP-------------------------LKDKVAWTAMVTGYVQNAKPREA 169 (548)
Q Consensus 115 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-------------------------~~~~~~~~~li~~~~~~g~~~~A 169 (548)
..-|.. .+......++-+++|..+|++.. -..+..|+.+..+-.+.|...+|
T Consensus 1047 dnyDa~---~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1047 DNYDAP---DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred ccCCch---hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHH
Confidence 331111 11222333344444444444321 11356899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 170 IEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 170 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
++-|-+. .|...|..++..+.+.|.+++-.+++..+.+..-+| .+-+.|+-+|++.+++.+-++++.
T Consensus 1124 ieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~----~id~eLi~AyAkt~rl~elE~fi~--- 1190 (1666)
T KOG0985|consen 1124 IESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP----YIDSELIFAYAKTNRLTELEEFIA--- 1190 (1666)
T ss_pred HHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc----cchHHHHHHHHHhchHHHHHHHhc---
Confidence 8877533 366789999999999999999999998877776554 445678999999999988776653
Q ss_pred CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC-----ccCCCCcCHHHHHHHHHHHHH
Q 038673 250 QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL-----KCYGVSPSTDHYACMVDLLGR 324 (548)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~~~~p~~~~~~~li~~~~~ 324 (548)
-||+.....+-.-|...|.++.|.-+|...-. |..+-..+.+.|. ....-.-+..+|-.+-.++..
T Consensus 1191 gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN---------~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1191 GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN---------FAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVD 1261 (1666)
T ss_pred CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh---------HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhc
Confidence 35665566666667777777777666654322 1111111111111 000111133445555555544
Q ss_pred cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 038673 325 AGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRR 402 (548)
Q Consensus 325 ~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 402 (548)
.+.+.-|.-. -+.+-....-..-|+..|...|-+++-+.+++..+.++.-+.+.|.-|+-.|++- +.++..+-++
T Consensus 1262 ~~EFrlAQiC--GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1262 KEEFRLAQIC--GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred hhhhhHHHhc--CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 4443333110 0001122334556667777777777777777777777777777788887777764 3344444333
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00011 Score=76.75 Aligned_cols=135 Identities=12% Similarity=0.034 Sum_probs=90.9
Q ss_pred cchHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-Ch--hhHHHHHHHhhccCCcHHHHHHHH
Q 038673 3 SFPRLVFEQVK---YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGP-VS--FTLSALFKACTEVLDVSLGQQIHA 76 (548)
Q Consensus 3 ~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~--~~~~~ll~a~~~~~~~~~a~~~~~ 76 (548)
..|.+.|+..- ..+..+|-.....|++..+++.|..+.-..-+. .| -. ..|..+.-.+...++...+..-|+
T Consensus 509 ~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQ 586 (1238)
T KOG1127|consen 509 KRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQRGPYYLEAHNLHGAVCEFQ 586 (1238)
T ss_pred HHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhhccccccCccchhhHHHHHH
Confidence 35777777544 346678888999999999999998883332221 12 11 122233334566777888888888
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHH---HHHHHHhCCChHHHHHH
Q 038673 77 QTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTE---LIVAYANNGDMESAGGL 141 (548)
Q Consensus 77 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---li~~~~~~g~~~~A~~~ 141 (548)
..++.. |.|...|..|..+|.++|++..|.++|.+...-++.++-. ....-+..|.+.+|+..
T Consensus 587 sALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 587 SALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA 652 (1238)
T ss_pred HHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 888875 7788999999999999999999999998887644333221 12233455666666555
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.8e-05 Score=83.75 Aligned_cols=212 Identities=14% Similarity=0.120 Sum_probs=166.1
Q ss_pred HHHHHHCCCCCCH-hhHHHHHHHHHccCChhHHHHHHHHHHHc-CCCC-CChHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 173 FERMQYAGVETDY-VTLVGVISACAQLGVIKYANWVCEIAEGS-GFGP-INNVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 173 ~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~p-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
|+++... .||. ..|..-+......++++.|+++.+++++. ++.- ..-..+|.+++++-..-|.-+...++|+++.
T Consensus 1447 ferlvrs--sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRS--SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhc--CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 3444443 4544 45666777778889999999999988753 1110 0245678888888888888889999999988
Q ss_pred CC-C-hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCC
Q 038673 250 QR-N-VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGC 327 (548)
Q Consensus 250 ~~-~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 327 (548)
+- | ...|..|..-|...++.++|.++|+.|.+. +.-....|...++.+.+..+
T Consensus 1525 qycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-------------------------F~q~~~vW~~y~~fLl~~ne 1579 (1710)
T KOG1070|consen 1525 QYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-------------------------FGQTRKVWIMYADFLLRQNE 1579 (1710)
T ss_pred HhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-------------------------hcchhhHHHHHHHHHhcccH
Confidence 63 3 456888999999999999999999999884 23355679999999999999
Q ss_pred HHHHHHHHHhCC-CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 038673 328 LEEALKMVEKMP-VEPN---GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRL 403 (548)
Q Consensus 328 ~~~A~~~~~~m~-~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 403 (548)
-++|.+++.+.- .-|. .....-....-.++|+.+.+..+|+..+.-.|.....|..++++-.+.|..+.+..+|++
T Consensus 1580 ~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1580 AEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999999987663 2233 334444556667899999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcc
Q 038673 404 LKMTGLKK 411 (548)
Q Consensus 404 m~~~g~~~ 411 (548)
....++.+
T Consensus 1660 vi~l~l~~ 1667 (1710)
T KOG1070|consen 1660 VIELKLSI 1667 (1710)
T ss_pred HHhcCCCh
Confidence 99888764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0017 Score=68.30 Aligned_cols=351 Identities=14% Similarity=0.154 Sum_probs=226.9
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhh-----HHHHHHHhhccCCcHHHHHHHHHHHHhC-------
Q 038673 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFT-----LSALFKACTEVLDVSLGQQIHAQTILLG------- 82 (548)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-----~~~ll~a~~~~~~~~~a~~~~~~~~~~~------- 82 (548)
.|+..-+.-+.++...+-+.+-++++++..-. |+.++ -+.|+-...+. +........+.+-..+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~---~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~~ia~i 1057 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIAEI 1057 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC---CcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCchhHHHH
Confidence 35555667788999999999999999998753 32222 22222222221 2222222222222111
Q ss_pred ---------------CCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCC
Q 038673 83 ---------------GFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPL 147 (548)
Q Consensus 83 ---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 147 (548)
.+..+....+.||. .-+.++.|.+.-++.. ....|..+..+-.+.|.+.+|.+-|-+ .
T Consensus 1058 ai~~~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyik--a 1130 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIK--A 1130 (1666)
T ss_pred HhhhhHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHh--c
Confidence 01222222222222 1233444444444333 345799999999999999999988754 4
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHH
Q 038673 148 KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSA 227 (548)
Q Consensus 148 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 227 (548)
.|+..|.-++....+.|.+++-.+++...++..-.|... +.++-+|++.+++.+.+++.. .| +......
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gp--N~A~i~~ 1199 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GP--NVANIQQ 1199 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CC--CchhHHH
Confidence 577889999999999999999999988777766566544 468889999998887666542 23 6667778
Q ss_pred HHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC----
Q 038673 228 LIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL---- 303 (548)
Q Consensus 228 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~---- 303 (548)
+.+-+...|.++.|.-+|.. +..|..|...+...|++..|.+.-++. .+..||..+-.||...+.
T Consensus 1200 vGdrcf~~~~y~aAkl~y~~-----vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1200 VGDRCFEEKMYEAAKLLYSN-----VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred HhHHHhhhhhhHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH
Confidence 88889999999999888865 457888999999999999998876654 356788888888887664
Q ss_pred --ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhh-cC-CC-
Q 038673 304 --KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VE-PNGGVWGALLGACQIHRNPEIAQIAANHLFE-LE-PD- 376 (548)
Q Consensus 304 --~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~-p~- 376 (548)
....+.....-..-++..|...|.++|-..+++... ++ .....|+-|.-.|.+.+ +++..+-++.... ++ |.
T Consensus 1269 QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKv 1347 (1666)
T KOG0985|consen 1269 QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKV 1347 (1666)
T ss_pred HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHH
Confidence 333444566778889999999999999999988652 22 22334444444444432 3333333222221 11 11
Q ss_pred -----CchhHHHHHHHHHHcCCchHHHH
Q 038673 377 -----KIGNYIILSNIYASAGMWDDVSR 399 (548)
Q Consensus 377 -----~~~~~~~l~~~~~~~g~~~~a~~ 399 (548)
....|.-|.-.|.+-..|+.|.-
T Consensus 1348 iRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1348 IRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 12255566666666666666654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00037 Score=70.54 Aligned_cols=192 Identities=17% Similarity=0.128 Sum_probs=132.3
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHH
Q 038673 27 YILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGC 106 (548)
Q Consensus 27 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 106 (548)
-.....+.+|+.+++.+..+. .-..-|..+..-|+..|+++.|.++|-.. ..++.-|.+|.+.|++++
T Consensus 742 ai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~----------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA----------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc----------chhHHHHHHHhccccHHH
Confidence 344566777777777776542 22334667777788888888888877542 235567888888888888
Q ss_pred HHHHHccCCCC--CeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC
Q 038673 107 SRKVFDEMPER--DVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD 184 (548)
Q Consensus 107 A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 184 (548)
|.++-.+...| ....|-+-..-+-+.|++.+|++++-.+..|+. -|..|-+.|..+..+++..+-...-+
T Consensus 810 a~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l--- 881 (1636)
T KOG3616|consen 810 AFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL--- 881 (1636)
T ss_pred HHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhhh---
Confidence 88888877665 445566666677888888888888888877764 35677888888888887765432211
Q ss_pred HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 185 YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 185 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
..|-..+..-+-..|++..|..-|-+ ..-|.+.++||-..+-|++|.++-..--
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~fle-----------a~d~kaavnmyk~s~lw~dayriakteg 935 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLE-----------AGDFKAAVNMYKASELWEDAYRIAKTEG 935 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHh-----------hhhHHHHHHHhhhhhhHHHHHHHHhccc
Confidence 12344455566677888887765532 2345677888888888988888766543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.8e-05 Score=70.85 Aligned_cols=208 Identities=11% Similarity=0.022 Sum_probs=123.5
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCh-hhHHHHHHHhhccC-CcHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 038673 19 LWTALIRGYILQGHLKDSISLYCSMRREGIGPVS-FTLSALFKACTEVL-DVSLGQQIHAQTILLGGFTSDLYVGNTMIG 96 (548)
Q Consensus 19 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 96 (548)
+++.+-..+...++.++|+.+..++++. .|+. .+|+.--.++...+ +++++...++.+++.. +.+..+|+..--
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~ 114 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHH
Confidence 4556666677778888999999888873 4643 34555555555556 5688888888888875 667777776665
Q ss_pred HHHHcCCh--HHHHHHHccCCC---CCeehHHHHHHHHHhCCChHHHHHHHccCCC---CChhHHHHHHHHHHHC---CC
Q 038673 97 MYVKCGFL--GCSRKVFDEMPE---RDVVSWTELIVAYANNGDMESAGGLFNELPL---KDKVAWTAMVTGYVQN---AK 165 (548)
Q Consensus 97 ~~~~~g~~--~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~---g~ 165 (548)
++.+.|.. +++..+++++.+ +|..+|+.....+...|+++++++.++++.+ .|..+|+.....+.+. |.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc
Confidence 66666652 556666666554 3455666666666666777777777766653 3455666555444433 22
Q ss_pred h----hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc
Q 038673 166 P----REAIEYFERMQYAGVETDYVTLVGVISACAQ----LGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK 234 (548)
Q Consensus 166 ~----~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~ 234 (548)
. ++++....++.... +-|...|+-+...+.. .+...++..+...+.+.++. +......|++.|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~---s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN---HVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC---cHHHHHHHHHHHHh
Confidence 2 34455554444432 2244445544444444 22334455555555554433 55666666666664
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.5e-05 Score=72.41 Aligned_cols=166 Identities=13% Similarity=0.014 Sum_probs=119.3
Q ss_pred ChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--CC-h---hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 038673 220 NNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--RN-V---FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIG 293 (548)
Q Consensus 220 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 293 (548)
.....+..+...|.+.|++++|...|+++.. |+ . .+|..+..+|...|++++|+..++++.+. .|+....
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~-- 106 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDA-- 106 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCch--
Confidence 4667777888888889999999998887764 22 2 35677788888999999999999999873 4442210
Q ss_pred HHHHHhhcCCccCCCCcCHHHHHHHHHHHHH--------cCCHHHHHHHHHhCC-CCCCh-hHHH---------------
Q 038673 294 VLTACSHVGLKCYGVSPSTDHYACMVDLLGR--------AGCLEEALKMVEKMP-VEPNG-GVWG--------------- 348 (548)
Q Consensus 294 ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~--------~g~~~~A~~~~~~m~-~~p~~-~~~~--------------- 348 (548)
...+..+...+.. .|+.++|.+.++++- ..|+. ..+.
T Consensus 107 ------------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~ 168 (235)
T TIGR03302 107 ------------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGK 168 (235)
T ss_pred ------------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHH
Confidence 0112222223332 377888888888773 34542 2222
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHhhcCCCC---chhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 349 --ALLGACQIHRNPEIAQIAANHLFELEPDK---IGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 349 --~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
.+...+...|+++.|...++.+++..|++ +..+..++.+|...|++++|..+++.+..+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23345778899999999999999987764 468899999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.5e-07 Score=54.38 Aligned_cols=35 Identities=26% Similarity=0.523 Sum_probs=32.9
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCh
Q 038673 18 FLWTALIRGYILQGHLKDSISLYCSMRREGIGPVS 52 (548)
Q Consensus 18 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 52 (548)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0002 Score=69.61 Aligned_cols=128 Identities=19% Similarity=0.174 Sum_probs=104.6
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 038673 253 VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEAL 332 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 332 (548)
...+-...-.+...|+.++|+..++.++. -.||.. .......+.+.+.++..+|.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~-----------------------~~~~~~~~i~~~~nk~~~A~ 360 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNP-----------------------YYLELAGDILLEANKAKEAI 360 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCH-----------------------HHHHHHHHHHHHcCChHHHH
Confidence 34444445556778999999999999887 355544 34666778999999999999
Q ss_pred HHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 333 KMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 333 ~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
+.++++. ..|+ ...+-.+-.++.+.|++.+|+.+++....-+|+++..|..|+.+|...|+..++...+.++.
T Consensus 361 e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 361 ERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999885 6787 55566666899999999999999999999999999999999999999999999888877664
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.3e-05 Score=67.54 Aligned_cols=95 Identities=11% Similarity=-0.083 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHc
Q 038673 314 HYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASA 391 (548)
Q Consensus 314 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 391 (548)
.+..+...+...|++++|...|+... ..| +...|..+..++...|+++.|...++++.+++|+++..+..++.++...
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 35556778889999999999999874 555 4778888889999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 038673 392 GMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 392 g~~~~a~~~~~~m~~~g 408 (548)
|++++|...++...+..
T Consensus 106 g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 106 GEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999886643
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.24 E-value=2e-06 Score=52.63 Aligned_cols=35 Identities=29% Similarity=0.631 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNG 288 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 288 (548)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.2e-05 Score=76.30 Aligned_cols=214 Identities=14% Similarity=0.058 Sum_probs=126.1
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChH
Q 038673 26 GYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLG 105 (548)
Q Consensus 26 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 105 (548)
-+.++|+..+|.-.|+...... +-+...|-.|....+..++-..|...+.+.++.. +.|..+.-+|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHH
Confidence 3667888888888888887753 2266778888888887777778888888888765 667778888888888888888
Q ss_pred HHHHHHccCCCCC-eehHHHHH---------HHHHhCCChHHHHHHHccCC-----CCChhHHHHHHHHHHHCCChhHHH
Q 038673 106 CSRKVFDEMPERD-VVSWTELI---------VAYANNGDMESAGGLFNELP-----LKDKVAWTAMVTGYVQNAKPREAI 170 (548)
Q Consensus 106 ~A~~~~~~m~~~~-~~~~~~li---------~~~~~~g~~~~A~~~f~~m~-----~~~~~~~~~li~~~~~~g~~~~A~ 170 (548)
.|.+.|+.-..-. ...|...- ..+.....+....++|-++. ..|......|.-.|--.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 8888777652100 00000000 01111111222222332221 235555556666666666666666
Q ss_pred HHHHHHHHCCCCC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhc
Q 038673 171 EYFERMQYAGVET-DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVG 247 (548)
Q Consensus 171 ~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 247 (548)
+.|+..+.. +| |...|+-|...+++....++|...|.++++..+. -+.+...|.-.|...|.+++|.+.|-.
T Consensus 451 Dcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~---yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 451 DCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG---YVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC---eeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 666665543 33 3344555655566666666666666666554433 455555556666666666666655543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0021 Score=72.38 Aligned_cols=329 Identities=12% Similarity=-0.026 Sum_probs=202.3
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCC-C----CCC--hhHHHHHHHHHH
Q 038673 27 YILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGG-F----TSD--LYVGNTMIGMYV 99 (548)
Q Consensus 27 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-~----~~~--~~~~~~li~~~~ 99 (548)
+...|++..+...++.+.......+..........+...|+++++...+......-. . .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666555555542211111222223334445677889999988887765310 0 111 112223344566
Q ss_pred HcCChHHHHHHHccCCC----CCe----ehHHHHHHHHHhCCChHHHHHHHccCCC-------CC--hhHHHHHHHHHHH
Q 038673 100 KCGFLGCSRKVFDEMPE----RDV----VSWTELIVAYANNGDMESAGGLFNELPL-------KD--KVAWTAMVTGYVQ 162 (548)
Q Consensus 100 ~~g~~~~A~~~~~~m~~----~~~----~~~~~li~~~~~~g~~~~A~~~f~~m~~-------~~--~~~~~~li~~~~~ 162 (548)
..|++++|...+++..+ .+. ...+.+...+...|++++|...+.+... +. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 88999999998887543 221 2345566677889999999998877641 11 2345566778889
Q ss_pred CCChhHHHHHHHHHHH----CCCC--C-CHhhHHHHHHHHHccCChhHHHHHHHHHHHcC--CCCCChHhHHHHHHHHHh
Q 038673 163 NAKPREAIEYFERMQY----AGVE--T-DYVTLVGVISACAQLGVIKYANWVCEIAEGSG--FGPINNVVVGSALIDMYS 233 (548)
Q Consensus 163 ~g~~~~A~~l~~~m~~----~g~~--p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~~~li~~y~ 233 (548)
.|++++|...+++... .+.. + ....+..+...+...|++++|...+....... ..|......+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999999887654 2211 1 22234445556677899999999988875531 112123455666777888
Q ss_pred cCCCHHHHHHHHhcCCC----C-ChhhhH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC
Q 038673 234 KCGSIDDAYRIFVGMKQ----R-NVFSYS-----SMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL 303 (548)
Q Consensus 234 ~~g~~~~A~~~~~~~~~----~-~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 303 (548)
..|+++.|...++.... . ....+. ..+..+...|+.+.|..++.............
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~-------------- 689 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHF-------------- 689 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchh--------------
Confidence 99999999988877632 1 111111 12244556789999998877654311110000
Q ss_pred ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038673 304 KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-------VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEP 375 (548)
Q Consensus 304 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 375 (548)
....+..+..++...|+.++|...+++.. ..++ ..+...+-.++...|+.+.|...+.+++++..
T Consensus 690 -------~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 690 -------LQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred -------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 01123456677888999999999888762 1122 23444455778899999999999999998554
Q ss_pred C
Q 038673 376 D 376 (548)
Q Consensus 376 ~ 376 (548)
.
T Consensus 763 ~ 763 (903)
T PRK04841 763 R 763 (903)
T ss_pred c
Confidence 3
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=6e-05 Score=67.26 Aligned_cols=116 Identities=12% Similarity=0.029 Sum_probs=71.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHH-HhcCCC--HH
Q 038673 163 NAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDM-YSKCGS--ID 239 (548)
Q Consensus 163 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~-y~~~g~--~~ 239 (548)
.++.++++..++...+.+ +.|...|..+...+...|+++.|...++.+.+.... +..++..+..+ |...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~---~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE---NAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCCCcH
Confidence 344455555555555443 445556666666666666677776666666665543 66666666664 355555 36
Q ss_pred HHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 240 DAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 240 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
+|.+++++..+ .+...+..+...+...|++++|+..|+++.+.
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67766666653 24456666666677777777777777777664
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.7e-05 Score=77.77 Aligned_cols=214 Identities=13% Similarity=0.048 Sum_probs=164.2
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc
Q 038673 155 AMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK 234 (548)
Q Consensus 155 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~ 234 (548)
.+...+...|-..+|+.+|+++. .+..++.+|...|+..+|..+..+-.+. | ++...|..+.+....
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek---~-~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK---D-PDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC---C-CcchhHHHhhhhccC
Confidence 45567778888889999888764 3455777888888888888888877762 2 488889999998888
Q ss_pred CCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHH
Q 038673 235 CGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDH 314 (548)
Q Consensus 235 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~ 314 (548)
.--+++|.++++....+--..|+. ...+++++.++.+.|+.-.+. .|- ...+
T Consensus 470 ~s~yEkawElsn~~sarA~r~~~~---~~~~~~~fs~~~~hle~sl~~--npl-----------------------q~~~ 521 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISARAQRSLAL---LILSNKDFSEADKHLERSLEI--NPL-----------------------QLGT 521 (777)
T ss_pred hHHHHHHHHHhhhhhHHHHHhhcc---ccccchhHHHHHHHHHHHhhc--Ccc-----------------------chhH
Confidence 888899999988765442222222 223478899999988876652 221 2345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKM-PVEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAG 392 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 392 (548)
|-.+.-+..+.++++.|.+.|..- ...|| ...||.+-.++.+.++..+|...+.++++.+-.+...+....-...+.|
T Consensus 522 wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvg 601 (777)
T KOG1128|consen 522 WFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVG 601 (777)
T ss_pred HHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcc
Confidence 666667777889999988888765 36787 7889999999999999999999999999987777777777777888999
Q ss_pred CchHHHHHHHHHHhCCC
Q 038673 393 MWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 393 ~~~~a~~~~~~m~~~g~ 409 (548)
.|++|.+.+.++.+...
T Consensus 602 e~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 602 EFEDAIKAYHRLLDLRK 618 (777)
T ss_pred cHHHHHHHHHHHHHhhh
Confidence 99999999998875443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.6e-06 Score=51.78 Aligned_cols=34 Identities=24% Similarity=0.516 Sum_probs=31.4
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 038673 17 PFLWTALIRGYILQGHLKDSISLYCSMRREGIGP 50 (548)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 50 (548)
+.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999987
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.4e-05 Score=78.05 Aligned_cols=205 Identities=16% Similarity=0.045 Sum_probs=140.4
Q ss_pred HHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CCeehHHHHHHHHHhCCChHH
Q 038673 60 KACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--RDVVSWTELIVAYANNGDMES 137 (548)
Q Consensus 60 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~ 137 (548)
..+...|-...|..+++.+ ..|..+|.+|...|+..+|..+..+-.+ ||...|..+.......--+++
T Consensus 406 ell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEk 475 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEK 475 (777)
T ss_pred HHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHH
Confidence 3444555556666666544 3345667777777777777776655443 566677777777666666777
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 038673 138 AGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFG 217 (548)
Q Consensus 138 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 217 (548)
|.++++....+--..|+.. ...++++.++.+.|+.-.+.+ +.-..||-....+..+.++++.+.+.|...+...+.
T Consensus 476 awElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd 551 (777)
T KOG1128|consen 476 AWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD 551 (777)
T ss_pred HHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 7777766554322222222 233678888888887655432 234456777777777888888888888887776644
Q ss_pred CCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC---ChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 218 PINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR---NVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 218 p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
+...||.+-.+|.+.|+-.+|...+.+..+- +...|...+......|.+++|++.+.++..
T Consensus 552 ---~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 552 ---NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred ---chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8888999999999999999998888887753 344566666677788889999888888765
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.015 Score=60.95 Aligned_cols=66 Identities=14% Similarity=0.224 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 038673 346 VWGALLGACQIHRNPE---IAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKK 411 (548)
Q Consensus 346 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 411 (548)
+.+.|+..|.+.++.. +|+-+++..+...|.|...-..|+++|+-.|-+..|.++++.+.-+.+..
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 3456778888888764 56677777778889998888899999999999999999998886555543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00024 Score=75.18 Aligned_cols=140 Identities=9% Similarity=0.018 Sum_probs=112.5
Q ss_pred ChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 038673 220 NNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--R-NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLT 296 (548)
Q Consensus 220 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 296 (548)
.+...+-.|.......|.+++|..+++...+ | +...+..+...+.+.+++++|+..+++... ..|+.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~-------- 153 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSS-------- 153 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCC--------
Confidence 3688888899999999999999999998874 4 455677788889999999999999999887 45653
Q ss_pred HHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038673 297 ACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELE 374 (548)
Q Consensus 297 a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 374 (548)
......+..++.+.|++++|..+|++.. ..|+ ..+|.++-.++...|+.+.|...|+++++..
T Consensus 154 ---------------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 154 ---------------AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred ---------------HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3457888889999999999999999885 3454 6778888888999999999999999999866
Q ss_pred CCCchhHHHH
Q 038673 375 PDKIGNYIIL 384 (548)
Q Consensus 375 p~~~~~~~~l 384 (548)
.+....|..+
T Consensus 219 ~~~~~~~~~~ 228 (694)
T PRK15179 219 GDGARKLTRR 228 (694)
T ss_pred CcchHHHHHH
Confidence 5544444433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00025 Score=63.52 Aligned_cols=155 Identities=11% Similarity=0.099 Sum_probs=102.2
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTA 297 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 297 (548)
+..+ ..+-..|--.|+-+.+..+...... .|....+..+....+.|++.+|+..|++... ..|
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p----------- 131 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAP----------- 131 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCC-----------
Confidence 4444 5555556666666666666555332 2334445566677777777777777777765 233
Q ss_pred HhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038673 298 CSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEP 375 (548)
Q Consensus 298 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 375 (548)
+|...|+.+.-+|.+.|++++|..-|.+.. +.|+ +...+.|...+.-.|+.+.|+.++.......+
T Consensus 132 ------------~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 132 ------------TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred ------------CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 245567777777777777777777666553 4443 56667777777777778888777777777666
Q ss_pred CCchhHHHHHHHHHHcCCchHHHHHH
Q 038673 376 DKIGNYIILSNIYASAGMWDDVSRVR 401 (548)
Q Consensus 376 ~~~~~~~~l~~~~~~~g~~~~a~~~~ 401 (548)
.+..+-..|..+....|++++|..+.
T Consensus 200 ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 200 ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 67777777777777777777777654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00023 Score=65.89 Aligned_cols=96 Identities=11% Similarity=-0.066 Sum_probs=58.6
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCh----hhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChh--
Q 038673 16 NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVS----FTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLY-- 89 (548)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~-- 89 (548)
....+-.+...+.+.|++++|...|++.... .|+. .++..+..++...|+++.|...++.+++.. +.+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~ 107 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDAD 107 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchH
Confidence 4455666777777778888888888777663 2332 345666667777788888888888777764 22222
Q ss_pred -HHHHHHHHHHHc--------CChHHHHHHHccCC
Q 038673 90 -VGNTMIGMYVKC--------GFLGCSRKVFDEMP 115 (548)
Q Consensus 90 -~~~~li~~~~~~--------g~~~~A~~~~~~m~ 115 (548)
++..+..++... |+.+.|.+.|+.+.
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 142 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELI 142 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 344444444433 44555555555544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00017 Score=75.57 Aligned_cols=60 Identities=15% Similarity=0.015 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 038673 344 GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRL 403 (548)
Q Consensus 344 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 403 (548)
..+|..+--.|....+++.|..+|.+...++|.+...+...+.+....|+.-+...+|..
T Consensus 850 ~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 850 HCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 455655555666777899999999999999999988888777777788887777777765
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.5e-06 Score=49.99 Aligned_cols=34 Identities=35% Similarity=0.616 Sum_probs=32.0
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 038673 253 VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKP 286 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 286 (548)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0022 Score=57.59 Aligned_cols=226 Identities=15% Similarity=0.054 Sum_probs=144.2
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChh-HHHHHHHHHHHcCCCCCChHhHHHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIK-YANWVCEIAEGSGFGPINNVVVGSA 227 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~p~~~~~~~~~ 227 (548)
++..-.-+-++|...|.+...+.- ... |-.|....+..+......-++.+ .-..+.+.+...... .+......
T Consensus 40 ~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~--sn~i~~l~ 113 (299)
T KOG3081|consen 40 DVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDG--SNLIDLLL 113 (299)
T ss_pred hhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccc--hhHHHHHH
Confidence 334444455677777766544332 111 11333333333333333233322 233444555554444 34455555
Q ss_pred HHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCC
Q 038673 228 LIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG 307 (548)
Q Consensus 228 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 307 (548)
-...|...|++++|.+.......-+....+. ..+.+..+.+-|.+.+++|.+- -+..|.+-|-.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~a---------- 178 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQA---------- 178 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHH----------
Confidence 5678899999999999998844333333333 3456777899999999999872 233333333322
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 308 VSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 308 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
.|....-.+.+.+|.-+|++|. ..|+..+.+....++...|++++|+.+++.++..+++++.+...++
T Consensus 179 ----------wv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 179 ----------WVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred ----------HHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 2233333567899999999995 5688999999999999999999999999999999999998988888
Q ss_pred HHHHHcCCchHHH-HHHHHHH
Q 038673 386 NIYASAGMWDDVS-RVRRLLK 405 (548)
Q Consensus 386 ~~~~~~g~~~~a~-~~~~~m~ 405 (548)
..-.-.|+-.++. +.+.+.+
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHH
Confidence 8777778765544 4455443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.07 E-value=9e-05 Score=72.57 Aligned_cols=122 Identities=14% Similarity=0.042 Sum_probs=79.7
Q ss_pred HHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhH
Q 038673 124 ELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKY 203 (548)
Q Consensus 124 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 203 (548)
+|+..+...++++.|.++|+++.+.++.....++..+...++-.+|++++++..+.. +-|...+..-...+.+.++.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 345555566677777777777766666666666677767777777777777666542 2344444445555666777777
Q ss_pred HHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 204 ANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 204 a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
|.++.+++.+..+. +..+|..|..+|.+.|+++.|...++.++
T Consensus 253 AL~iAk~av~lsP~---~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 253 ALEIAKKAVELSPS---EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHhCch---hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777666533 66677777777777777777777777665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00073 Score=65.80 Aligned_cols=121 Identities=13% Similarity=-0.001 Sum_probs=67.5
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHH
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTL-VGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDM 231 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~ 231 (548)
+--....+...|++++|+..++.+... .||...| ......+.+.++..+|.+.++.+....+. .....-.+.++
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~---~~~l~~~~a~a 383 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN---SPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---ccHHHHHHHHH
Confidence 333334445556666666666665554 3333333 33444556666666666666666655433 35555556666
Q ss_pred HhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHH
Q 038673 232 YSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGD 278 (548)
Q Consensus 232 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 278 (548)
|.+.|++.+|.++++.... .|+..|..|..+|...|+..+|..-..+
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 6666666666666665542 3555666666666666666555544443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00037 Score=62.41 Aligned_cols=160 Identities=16% Similarity=0.033 Sum_probs=105.7
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHH
Q 038673 86 SDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---RDVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTG 159 (548)
Q Consensus 86 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~ 159 (548)
.|..+ ..+-..+.-.|+-+....+...... .|....+..+....+.|++.+|...|.+.. .+|...|+.+..+
T Consensus 65 ~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 65 EDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred chHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 34444 5556666667777776666665432 233344556677777777777777777654 3467777777777
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHH
Q 038673 160 YVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSID 239 (548)
Q Consensus 160 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~ 239 (548)
|.+.|+.++|..-|.+..+.- .-+...++.+...+.-.|+++.|..++......+.. +..+-..|.-.....|+++
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a---d~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA---DSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC---chHHHHHHHHHHhhcCChH
Confidence 777787777777777776542 123345566666666777777777777777666544 6677777777777777777
Q ss_pred HHHHHHhcCCC
Q 038673 240 DAYRIFVGMKQ 250 (548)
Q Consensus 240 ~A~~~~~~~~~ 250 (548)
+|.++-..-..
T Consensus 220 ~A~~i~~~e~~ 230 (257)
T COG5010 220 EAEDIAVQELL 230 (257)
T ss_pred HHHhhcccccc
Confidence 77777655443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00015 Score=60.36 Aligned_cols=94 Identities=11% Similarity=0.007 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 038673 313 DHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYAS 390 (548)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 390 (548)
...-.+...+...|++++|.++|+-.- ..|. ..-|-.|-.+|...|++++|+..+.++..++|+++.++..++.+|..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 344455667778999999999999874 4554 67778888889999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHh
Q 038673 391 AGMWDDVSRVRRLLKM 406 (548)
Q Consensus 391 ~g~~~~a~~~~~~m~~ 406 (548)
.|+.+.|.+.|+....
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999997754
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0025 Score=56.86 Aligned_cols=188 Identities=13% Similarity=0.141 Sum_probs=139.8
Q ss_pred CCChhHHHHHHHHHHH---CC-CCCCHhh-HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCC
Q 038673 163 NAKPREAIEYFERMQY---AG-VETDYVT-LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGS 237 (548)
Q Consensus 163 ~g~~~~A~~l~~~m~~---~g-~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~ 237 (548)
..+.++.++++.++.. .| ..|+..+ |-.++-+....|..+.|...++.+...-+ .+..+...-.-.+-..|+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp---~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP---GSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC---CChhHHHHHHHHHHHhhc
Confidence 4567888888888754 34 6677765 44566677788899999999999877653 355554444455666899
Q ss_pred HHHHHHHHhcCCCC---ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHH
Q 038673 238 IDDAYRIFVGMKQR---NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDH 314 (548)
Q Consensus 238 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~ 314 (548)
+++|.++++.+.+. |.+++---+...-..|+.-+|++-+.+..+ .+.-|.+.
T Consensus 102 ~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-------------------------~F~~D~EA 156 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-------------------------KFMNDQEA 156 (289)
T ss_pred hhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-------------------------HhcCcHHH
Confidence 99999999999864 445666666667778888899988888777 34557888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHH---hcCCHHHHHHHHHHHhhcCCCCc
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQ---IHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
|.-+.+.|...|++++|.-.++++- +.|- +..+..+-..+. ...+.+.+.+.+.+.+++.|.+.
T Consensus 157 W~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 157 WHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH
Confidence 9999999999999999999999985 5665 444455544432 23467889999999999999644
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.022 Score=56.39 Aligned_cols=194 Identities=12% Similarity=0.079 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCC---CHHHHHHHHhcCCC----CChhhhHHHHHHHHhcCCHHHHHH
Q 038673 202 KYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCG---SIDDAYRIFVGMKQ----RNVFSYSSMILGFAMHGRAHAAIQ 274 (548)
Q Consensus 202 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~ 274 (548)
+++..+++..+..-.. .+..+|..+.+.=-..- +.+.....++++.. .-..+|-..|..-.+..-...|..
T Consensus 310 ~e~~~~yEr~I~~l~~--~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLK--ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHH
Confidence 4555666655544333 34555555444322221 23444444444331 122345555555555555666666
Q ss_pred HHHHHHHcCCCC-CHhhHHHHHHHHhhcCC-----------ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC---
Q 038673 275 LFGDMVKTETKP-NGVTFIGVLTACSHVGL-----------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--- 339 (548)
Q Consensus 275 l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~-----------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--- 339 (548)
+|.+..+.+..+ +....++++.-++.... ..+|- ++.--...++-+...++-..|..+|++..
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 666666665555 44444455544443332 22221 23334567778888888888888888774
Q ss_pred CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----chhHHHHHHHHHHcCCchHHHH
Q 038673 340 VEPN--GGVWGALLGACQIHRNPEIAQIAANHLFELEPDK----IGNYIILSNIYASAGMWDDVSR 399 (548)
Q Consensus 340 ~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~ 399 (548)
+.|+ ..+|..+|.--..-|+...+.++-++.....|.+ ...-..+++.|.-.+....-..
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~ 531 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLD 531 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHH
Confidence 2344 5789999998889999999998888877755521 1133445555655555444333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0012 Score=69.99 Aligned_cols=132 Identities=9% Similarity=-0.016 Sum_probs=99.9
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CC-eehHHHHHHHHHhCCChHHHHHHHccCCCC---ChhHHHHHH
Q 038673 84 FTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--RD-VVSWTELIVAYANNGDMESAGGLFNELPLK---DKVAWTAMV 157 (548)
Q Consensus 84 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li 157 (548)
++.+...+-.|.....+.|.+++|..+++...+ |+ ...+..+...+.+.+++++|+..+++.... +....+.+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 566778888888888888888888888888765 43 445667778888888888888888777633 455667777
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 038673 158 TGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGF 216 (548)
Q Consensus 158 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 216 (548)
.++.+.|++++|..+|++....+ +-+..++.++..++-..|+.++|...|+.+.+..-
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 78888888888888888887732 33466777888888888888888888888876543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00013 Score=71.45 Aligned_cols=121 Identities=14% Similarity=0.202 Sum_probs=98.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038673 257 SSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVE 336 (548)
Q Consensus 257 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 336 (548)
.+++..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.++++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--------------------------v~~~LA~v~l~~~~E~~AI~ll~ 224 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--------------------------VAVLLARVYLLMNEEVEAIRLLN 224 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--------------------------HHHHHHHHHHhcCcHHHHHHHHH
Confidence 345666677889999999999998852 43 23446777777888899999998
Q ss_pred hCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 337 KMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 337 ~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
+.- ..| +...+......|...++++.|..+++++.+..|++..+|..|+.+|...|++++|+..++.+.
T Consensus 225 ~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 225 EALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 774 334 445555555778999999999999999999999999999999999999999999999988775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.1e-05 Score=47.71 Aligned_cols=31 Identities=29% Similarity=0.695 Sum_probs=28.4
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 038673 18 FLWTALIRGYILQGHLKDSISLYCSMRREGI 48 (548)
Q Consensus 18 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 48 (548)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999998874
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0001 Score=61.49 Aligned_cols=96 Identities=22% Similarity=0.265 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 038673 313 DHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYAS 390 (548)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 390 (548)
.....+...+...|++++|.+.++... ..| +...|..+...+...|+++.|...++...+.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 446667788889999999999998874 445 467777888889999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhCC
Q 038673 391 AGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 391 ~g~~~~a~~~~~~m~~~g 408 (548)
.|++++|.+.++...+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 98 LGEPESALKALDLAIEIC 115 (135)
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 999999999998886643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0028 Score=56.54 Aligned_cols=184 Identities=16% Similarity=0.122 Sum_probs=134.3
Q ss_pred CCCchHHHHHHHHHHH---CC-CCCChhh-HHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCh
Q 038673 30 QGHLKDSISLYCSMRR---EG-IGPVSFT-LSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFL 104 (548)
Q Consensus 30 ~g~~~~A~~~~~~m~~---~g-~~p~~~~-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 104 (548)
..++++.++++..+.. .| ..|+..+ |..++-+....|+.+.|..++.++... ++.+..+...-.-.+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhch
Confidence 4678999999988876 34 5566654 556666777788999999999998776 555555544444445678999
Q ss_pred HHHHHHHccCCCC---CeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 038673 105 GCSRKVFDEMPER---DVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQY 178 (548)
Q Consensus 105 ~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 178 (548)
++|.++++.+.+. |.+++---+...-..|+.-+|++-+.... ..|...|.-+...|...|++++|.-.++++.-
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999998863 45566666667777787778877666554 34889999999999999999999999999886
Q ss_pred CCCCCCHh-hHHHHHHHH---HccCChhHHHHHHHHHHHcCCC
Q 038673 179 AGVETDYV-TLVGVISAC---AQLGVIKYANWVCEIAEGSGFG 217 (548)
Q Consensus 179 ~g~~p~~~-t~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~ 217 (548)
. .|... .+..+...+ +...+++.+.++|.+.++....
T Consensus 183 ~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 183 I--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred c--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 4 44433 333444433 3344678888999988886543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00095 Score=71.65 Aligned_cols=216 Identities=12% Similarity=0.067 Sum_probs=128.6
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHH-HHHHHhhccCCcHHHHHHHHHHHHhC----------
Q 038673 14 YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLS-ALFKACTEVLDVSLGQQIHAQTILLG---------- 82 (548)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~a~~~~~~~~~a~~~~~~~~~~~---------- 82 (548)
+.+...|-.|+..|...+++++|.++.+.-.+. .|+...+- .+.-.+.+.++...+..+ .+...-
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 446678999999999999999999999976663 56554432 222244455554444444 222221
Q ss_pred -------CCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhH
Q 038673 83 -------GFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---RDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVA 152 (548)
Q Consensus 83 -------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~ 152 (548)
.+..+...+..|..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... ++++|++++.+.
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA------- 175 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA------- 175 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH-------
Confidence 0112225556666666666777777777666654 3455666666666666 666666655432
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCCChHhHHHHHHHH
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGS-GFGPINNVVVGSALIDM 231 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~~~li~~ 231 (548)
+..|...+++.++.++|.++... .|+ +++.-.++.+.+..+ +.. .-..++-.|-..
T Consensus 176 ----V~~~i~~kq~~~~~e~W~k~~~~--~~~---------------d~d~f~~i~~ki~~~~~~~--~~~~~~~~l~~~ 232 (906)
T PRK14720 176 ----IYRFIKKKQYVGIEEIWSKLVHY--NSD---------------DFDFFLRIERKVLGHREFT--RLVGLLEDLYEP 232 (906)
T ss_pred ----HHHHHhhhcchHHHHHHHHHHhc--Ccc---------------cchHHHHHHHHHHhhhccc--hhHHHHHHHHHH
Confidence 22355555666666666666654 222 222223333333332 333 355666777788
Q ss_pred HhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHH
Q 038673 232 YSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFA 264 (548)
Q Consensus 232 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 264 (548)
|-+.++++++..+|..+.+ .|.....-++.+|.
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 8888888888888888774 34455666666665
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0003 Score=58.66 Aligned_cols=103 Identities=9% Similarity=-0.008 Sum_probs=68.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHH
Q 038673 187 TLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGF 263 (548)
Q Consensus 187 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 263 (548)
....+...+...|+.++|...++.+...+.. +...+..+...|.+.|++++|...|+...+ .+...|..+...|
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPY---NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3445555666677777777777777665533 667777777777777777777777776543 3445566666677
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 038673 264 AMHGRAHAAIQLFGDMVKTETKPNGVTFIGV 294 (548)
Q Consensus 264 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 294 (548)
...|++++|+..|++..+ ..|+...+..+
T Consensus 96 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 124 (135)
T TIGR02552 96 LALGEPESALKALDLAIE--ICGENPEYSEL 124 (135)
T ss_pred HHcCCHHHHHHHHHHHHH--hccccchHHHH
Confidence 777888888888877776 45665554433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0065 Score=54.67 Aligned_cols=157 Identities=13% Similarity=0.104 Sum_probs=96.9
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC-ChhhhHHHHHHHHh--
Q 038673 189 VGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR-NVFSYSSMILGFAM-- 265 (548)
Q Consensus 189 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~-- 265 (548)
..-...|.+.|++++|.+..... .+......=+..+.|..+.+-|.+.+++|.+- +-.+.+.|..++.+
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~--------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la 183 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLG--------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLA 183 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhcc--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh
Confidence 33344566777777777665441 14444444455666667777777777777763 33455555555443
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CC
Q 038673 266 --HGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VE 341 (548)
Q Consensus 266 --~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~ 341 (548)
.+...+|.-+|++|-++ ..|++.+.+-+..+....|++++|..++++.- ..
T Consensus 184 ~ggek~qdAfyifeE~s~k-------------------------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEK-------------------------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred ccchhhhhHHHHHHHHhcc-------------------------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 34577778888887652 34445556666666667788888888887763 22
Q ss_pred CChhHHHHHHHH-HHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 342 PNGGVWGALLGA-CQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 342 p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
.++.+...++-. .....+.+--.+...++...+|.++
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 346666555543 4444455666777788888888765
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.2e-05 Score=46.44 Aligned_cols=31 Identities=26% Similarity=0.574 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTET 284 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 284 (548)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00036 Score=53.43 Aligned_cols=92 Identities=22% Similarity=0.236 Sum_probs=79.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAG 392 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 392 (548)
+..+...+...|++++|...+++.. ..|+ ...+..+...+...++++.|...++...+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 5567778888999999999998874 4454 4667777788889999999999999999999998889999999999999
Q ss_pred CchHHHHHHHHHHh
Q 038673 393 MWDDVSRVRRLLKM 406 (548)
Q Consensus 393 ~~~~a~~~~~~m~~ 406 (548)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999999987754
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0072 Score=59.65 Aligned_cols=348 Identities=12% Similarity=0.043 Sum_probs=192.1
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHHcCCh
Q 038673 26 GYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSD-LYVGNTMIGMYVKCGFL 104 (548)
Q Consensus 26 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 104 (548)
+....|+++.|+..|.+.+.-. ++|...|+.-..+++..|++++|.+=-...++. .|+ ..-|+-+..++.-.|++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l---~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL---NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc---CCchhhHHHHhHHHHHhcccH
Confidence 3456799999999999888643 347777888888999999999888777666664 455 45678888888888999
Q ss_pred HHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHH-HHHHccCCCCChhHHHHHH-----HHHHHCCChhHHHHHHHH
Q 038673 105 GCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESA-GGLFNELPLKDKVAWTAMV-----TGYVQNAKPREAIEYFER 175 (548)
Q Consensus 105 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A-~~~f~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~l~~~ 175 (548)
++|...|.+-.+ | |...++.+..++ ..+.+ .+.|. ++..|..+. +.+...-.+..-++.+..
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 999999988765 2 444556666655 11111 11111 111111111 111111111111111000
Q ss_pred HHH-CCCCCCHhhHHHHHHHHHccCChhHHHHHH-HHH----------HHcCCCCC-----------ChHhHHHHHHHHH
Q 038673 176 MQY-AGVETDYVTLVGVISACAQLGVIKYANWVC-EIA----------EGSGFGPI-----------NNVVVGSALIDMY 232 (548)
Q Consensus 176 m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~-~~~----------~~~~~~p~-----------~~~~~~~~li~~y 232 (548)
-.. .+...+ ...++.+.......+.....- ..+ ......|. .-..-...+.++.
T Consensus 158 ~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 158 NPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred CcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 000 000000 000111111000000000000 000 00000000 0122345567777
Q ss_pred hcCCCHHHHHHHHhcCCC--CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCc
Q 038673 233 SKCGSIDDAYRIFVGMKQ--RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSP 310 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p 310 (548)
-+..+++.|.+-+....+ .++.-++....+|...|.+.+....-....+.|.. ...-|+.+-.++.+.
T Consensus 235 ykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~--------- 304 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL--------- 304 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh---------
Confidence 777888888888876654 34444666667888888888777776666555422 112233333333332
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhC--------------------------C-CCCCh-hHHHHHHHHHHhcCCHHH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKM--------------------------P-VEPNG-GVWGALLGACQIHRNPEI 362 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m--------------------------~-~~p~~-~~~~~ll~~~~~~~~~~~ 362 (548)
..+|.+.++++.|...|++. . +.|.. .-...-.+.+.+.|++..
T Consensus 305 --------g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 305 --------GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred --------hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHH
Confidence 23344444444444444432 1 33442 112222356788999999
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 363 AQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 363 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
|...+.+++..+|+++..|...+-+|.+.|.+..|+.=.+...+.
T Consensus 377 Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 377 AVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998865555443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0023 Score=54.03 Aligned_cols=125 Identities=13% Similarity=0.092 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY---VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSAL 228 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 228 (548)
.|..++..+ ..++...+...++.+.... +.+. ...-.+...+...|++++|...|+.+......|.........|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344455554 3677777777777776652 2221 1222344556677777777777777777664321223455556
Q ss_pred HHHHhcCCCHHHHHHHHhcCCCC--ChhhhHHHHHHHHhcCCHHHHHHHHHH
Q 038673 229 IDMYSKCGSIDDAYRIFVGMKQR--NVFSYSSMILGFAMHGRAHAAIQLFGD 278 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~ 278 (548)
...+...|++++|...++....+ ....+......|...|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777778888887777665432 223445555667777888888777765
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00088 Score=54.25 Aligned_cols=96 Identities=14% Similarity=0.004 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---chhHHHH
Q 038673 313 DHYACMVDLLGRAGCLEEALKMVEKMP-VEPN----GGVWGALLGACQIHRNPEIAQIAANHLFELEPDK---IGNYIIL 384 (548)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 384 (548)
.++-.++..+.+.|++++|.+.|+++. ..|+ ...+..+..++...|+++.|...++.+....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456677888999999999999998884 3344 2455667788999999999999999999988875 4578889
Q ss_pred HHHHHHcCCchHHHHHHHHHHhCC
Q 038673 385 SNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 385 ~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
+.++...|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999997754
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00065 Score=62.11 Aligned_cols=100 Identities=20% Similarity=0.250 Sum_probs=83.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-C
Q 038673 262 GFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-V 340 (548)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 340 (548)
-..+.+++.+|+..|.+.++ +.|+..+| |..-..+|.+.|.++.|++--+... +
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVy-----------------------ycNRAAAy~~Lg~~~~AVkDce~Al~i 144 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVY-----------------------YCNRAAAYSKLGEYEDAVKDCESALSI 144 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchH-----------------------HHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence 35678999999999999998 67776655 7778889999999999988776653 6
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 038673 341 EPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSN 386 (548)
Q Consensus 341 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 386 (548)
.|. ..+|..|-.++...|++++|++.|++.++++|++......|-.
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 666 6789999999999999999999999999999999855444443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0026 Score=53.70 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=23.3
Q ss_pred HHHHHhCCChHHHHHHHccCCCC--ChhHHHHHHHHHHHCCChhHHHHHHHH
Q 038673 126 IVAYANNGDMESAGGLFNELPLK--DKVAWTAMVTGYVQNAKPREAIEYFER 175 (548)
Q Consensus 126 i~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~ 175 (548)
...+...|++++|+..++....+ ....+......|.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33444444444444444443322 223344444555555555555555543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0016 Score=52.70 Aligned_cols=107 Identities=17% Similarity=0.093 Sum_probs=80.8
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALK 333 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 333 (548)
.++..+...+...|++++|.+.|.++... .|+.. .....+..+...+.+.|++++|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~--------------------~~~~~~~~l~~~~~~~~~~~~A~~ 60 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK--YPKST--------------------YAPNAHYWLGEAYYAQGKYADAAK 60 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcc--------------------ccHHHHHHHHHHHHhhccHHHHHH
Confidence 34566777788899999999999998874 23311 112345668888999999999999
Q ss_pred HHHhCC-CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHH
Q 038673 334 MVEKMP-VEPN----GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYI 382 (548)
Q Consensus 334 ~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 382 (548)
.++++. ..|+ ..++..+..++...|+.+.|...++++++..|+++.+..
T Consensus 61 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 61 AFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 998874 3344 456777778889999999999999999999998875443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00031 Score=50.64 Aligned_cols=64 Identities=19% Similarity=0.160 Sum_probs=57.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC-CchHHHHHHHHHHh
Q 038673 343 NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAG-MWDDVSRVRRLLKM 406 (548)
Q Consensus 343 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 406 (548)
++.+|..+-..+...|++++|+..|++.++.+|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46678888888999999999999999999999999999999999999999 79999999887754
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00011 Score=55.58 Aligned_cols=78 Identities=19% Similarity=0.234 Sum_probs=64.3
Q ss_pred cCCHHHHHHHHHhCC-CCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHH
Q 038673 325 AGCLEEALKMVEKMP-VEP---NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRV 400 (548)
Q Consensus 325 ~g~~~~A~~~~~~m~-~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 400 (548)
.|++++|+.+++++. ..| +...|-.+..++.+.|+++.|..++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 588999999999884 234 455666678999999999999999999 777887777777889999999999999999
Q ss_pred HHH
Q 038673 401 RRL 403 (548)
Q Consensus 401 ~~~ 403 (548)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.003 Score=62.12 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=87.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 260 ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 260 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
...+...|++++|+++|++.++ ..|+ +...|..+..+|.+.|++++|+..+++..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~-----------------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al 63 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPN-----------------------NAELYADRAQANIKLGNFTEAVADANKAI 63 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCC-----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456778999999999999988 4555 33557788889999999999999998884
Q ss_pred -CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 038673 340 -VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYAS 390 (548)
Q Consensus 340 -~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 390 (548)
+.|+ ...|..+..+|...|+++.|...++++++++|+++.....+..+..+
T Consensus 64 ~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 64 ELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5564 67788888899999999999999999999999998777766555443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.003 Score=52.75 Aligned_cols=104 Identities=9% Similarity=0.003 Sum_probs=76.4
Q ss_pred HccCC-CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCC
Q 038673 142 FNELP-LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPIN 220 (548)
Q Consensus 142 f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 220 (548)
+..+. +.+....-.+...+.+.|++++|..+|+-+.... +-+..-|..|..++-..|++++|...|..+....+.
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d--- 101 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID--- 101 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---
Confidence 44444 4455555666667778888888888888887643 224445566777777888888888888888887755
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
++..+..+..+|.+.|+.+.|.+.|+...
T Consensus 102 dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 102 APQAPWAAAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 78888888888888888888888887653
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00049 Score=48.93 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=45.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 351 LGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 351 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
...+...|+++.|+..++.+++..|+++..+..++.++...|++++|..+++++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567788888888888888888888888888888888888888888888888764
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.001 Score=65.35 Aligned_cols=90 Identities=13% Similarity=0.052 Sum_probs=79.3
Q ss_pred HHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchH
Q 038673 319 VDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDD 396 (548)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 396 (548)
...+...|++++|++.|++.. ..|+ ...|..+..++...|+++.|...++++++++|+++..|..++.+|...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 456678899999999999884 5565 66777777899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 038673 397 VSRVRRLLKMTG 408 (548)
Q Consensus 397 a~~~~~~m~~~g 408 (548)
|...+++..+..
T Consensus 89 A~~~~~~al~l~ 100 (356)
T PLN03088 89 AKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHhC
Confidence 999999887543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0017 Score=49.55 Aligned_cols=91 Identities=20% Similarity=0.106 Sum_probs=47.5
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMY 232 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y 232 (548)
|..+...+...|++++|...+++..+.. +.+...+..+...+...++++.|.+.++...+.... +..++..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD---NAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---chhHHHHHHHHH
Confidence 3445555556666666666666655432 222234444555555556666666666655554432 334445555555
Q ss_pred hcCCCHHHHHHHHhc
Q 038673 233 SKCGSIDDAYRIFVG 247 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~ 247 (548)
...|+++.|...+..
T Consensus 79 ~~~~~~~~a~~~~~~ 93 (100)
T cd00189 79 YKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHhHHHHHHHHHH
Confidence 555555555555444
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.15 Score=48.93 Aligned_cols=282 Identities=15% Similarity=0.081 Sum_probs=140.0
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 038673 18 FLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGM 97 (548)
Q Consensus 18 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 97 (548)
+||..+...-.+.|+.+-|..+++ ..|+..-= +..+...++.+.| +...++.| .||. +|..|+.+
T Consensus 1 IS~a~IA~~A~~~GR~~LA~~LL~------~Ep~~~~q---VplLL~m~e~e~A---L~kAi~Sg--D~DL-i~~vLl~L 65 (319)
T PF04840_consen 1 ISYAEIARKAYEEGRPKLATKLLE------LEPRASKQ---VPLLLKMGEDELA---LNKAIESG--DTDL-IYLVLLHL 65 (319)
T ss_pred CCHHHHHHHHHHcChHHHHHHHHH------cCCChHHH---HHHHhcCCchHHH---HHHHHHcC--CccH-HHHHHHHH
Confidence 367777777788899998888764 23443221 2233445555555 44566665 3332 34444443
Q ss_pred HHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHH
Q 038673 98 YVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQ 177 (548)
Q Consensus 98 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 177 (548)
--+. ...+-..++...+ .+ ..+...|++..+.+.-..+|.+-..........+-.++.. .+.++-...+....
T Consensus 66 ~~~l-~~s~f~~il~~~p----~a-~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~-~~~~~~~~~L~~a~ 138 (319)
T PF04840_consen 66 KRKL-SLSQFFKILNQNP----VA-SNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQ-KDVEEKISFLKQAQ 138 (319)
T ss_pred HHhC-CHHHHHHHHHhCc----ch-HHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 3222 2222222222211 11 3344556666666665555554332222222222223222 23333222222221
Q ss_pred HC-CCCCCHhhHHHHHHHHHccCChhHHHHHHHHH----HHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCC
Q 038673 178 YA-GVETDYVTLVGVISACAQLGVIKYANWVCEIA----EGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRN 252 (548)
Q Consensus 178 ~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 252 (548)
+. +-..+......++ ++-.++++.- .+.+.. ....+.+..+.-+...|+...|.++-.+..-|+
T Consensus 139 ~~y~~~k~~~f~~~~~---------e~q~~Ll~~Q~~Le~~~~~~--f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~d 207 (319)
T PF04840_consen 139 KLYSKSKNDAFEAKLI---------EEQIKLLEYQKELEEKYNTN--FVGLSLNDTIRKLIEMGQEKQAEKLKKEFKVPD 207 (319)
T ss_pred HHHHhcchhHHHHHHH---------HHHHHHHHHHHHHHHHhccc--hhcCCHHHHHHHHHHCCCHHHHHHHHHHcCCcH
Confidence 10 0001111111111 1111222111 011111 112233344555666788888888888887788
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 038673 253 VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEAL 332 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 332 (548)
-.-|-..+.+++..++|++-..+... .-. +.-|...++.+.+.|+..+|.
T Consensus 208 krfw~lki~aLa~~~~w~eL~~fa~s----kKs--------------------------PIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 208 KRFWWLKIKALAENKDWDELEKFAKS----KKS--------------------------PIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhC----CCC--------------------------CCChHHHHHHHHHCCCHHHHH
Confidence 88888888888888888776665332 111 123566677777777888888
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 038673 333 KMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANH 369 (548)
Q Consensus 333 ~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 369 (548)
.++.+++ +..-+..|.+.|++.+|.+..-+
T Consensus 258 ~yI~k~~-------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 258 KYIPKIP-------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHhCC-------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777753 13344556677777776655443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0038 Score=59.19 Aligned_cols=131 Identities=15% Similarity=0.223 Sum_probs=87.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHH---H-HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038673 223 VVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMIL---G-FAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTAC 298 (548)
Q Consensus 223 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~-~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 298 (548)
.+|..++...-+.+.++.|+++|.+..+....+|...+. . |...++.+.|..+|+...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~---------------- 65 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK---------------- 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----------------
Confidence 356666777777777777777777776543333333322 2 22246666688888887763
Q ss_pred hhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038673 299 SHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN----GGVWGALLGACQIHRNPEIAQIAANHLFEL 373 (548)
Q Consensus 299 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 373 (548)
+..+...|...++.+.+.|+.+.|..+|++.- .-|. ...|...+..-.+.|+.+....+.+++.+.
T Consensus 66 ---------f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 66 ---------FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp ---------HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22244557777888888888888888888764 2233 358999999889999999999999999998
Q ss_pred CCCCc
Q 038673 374 EPDKI 378 (548)
Q Consensus 374 ~p~~~ 378 (548)
.|++.
T Consensus 137 ~~~~~ 141 (280)
T PF05843_consen 137 FPEDN 141 (280)
T ss_dssp TTTS-
T ss_pred hhhhh
Confidence 88755
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0055 Score=53.52 Aligned_cols=91 Identities=13% Similarity=-0.003 Sum_probs=67.5
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD--YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGS 226 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~ 226 (548)
....+..+...+...|++++|+..|++.......++ ...+..+...+.+.|++++|...+..+.+.... +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK---QPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHH
Confidence 455677778888888999999999888876533222 346777778888889999999998888876543 677777
Q ss_pred HHHHHHhcCCCHHHHH
Q 038673 227 ALIDMYSKCGSIDDAY 242 (548)
Q Consensus 227 ~li~~y~~~g~~~~A~ 242 (548)
.+...|...|+...+.
T Consensus 111 ~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 111 NIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHHcCChHhHh
Confidence 7788888777755544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0099 Score=56.83 Aligned_cols=273 Identities=12% Similarity=-0.038 Sum_probs=138.3
Q ss_pred HhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC-C--CeehHHHHHHHHHhCCChHH
Q 038673 61 ACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE-R--DVVSWTELIVAYANNGDMES 137 (548)
Q Consensus 61 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~--~~~~~~~li~~~~~~g~~~~ 137 (548)
++.+..++..|...+...++.. +.+..-|..-+..|.-.|++++|.--.+.-.+ . ......-.-+++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHH
Confidence 3445556677777777777764 55566666666666666777766544433222 1 12222333344444455555
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCCHhhHHHHHH-HHHccCChhHHHHHHHHHHHcC
Q 038673 138 AGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGV-ETDYVTLVGVIS-ACAQLGVIKYANWVCEIAEGSG 215 (548)
Q Consensus 138 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~ 215 (548)
|.+.|+ +...+ ....|+..++....... +|.-.++-.+-. .+...|+.+.|.++-..+.+..
T Consensus 136 A~~~~~-----~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld 199 (486)
T KOG0550|consen 136 AEEKLK-----SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD 199 (486)
T ss_pred HHHHhh-----hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc
Confidence 555544 11111 11122222222222211 233334433322 2355677777777766666654
Q ss_pred CCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhh---------------hHHHHHHHHhcCCHHHHHHHHHHHH
Q 038673 216 FGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFS---------------YSSMILGFAMHGRAHAAIQLFGDMV 280 (548)
Q Consensus 216 ~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~---------------~~~li~~~~~~g~~~~A~~l~~~m~ 280 (548)
.. +....-.=..++--.++.+.|...|++...-|+.. |..=-.-..++|++..|.+.|.+.+
T Consensus 200 ~~---n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal 276 (486)
T KOG0550|consen 200 AT---NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL 276 (486)
T ss_pred cc---hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh
Confidence 33 32222222223334566777777777766433221 1111223455677777777777766
Q ss_pred HcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChh-HHHHHH--HHHHhc
Q 038673 281 KTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGG-VWGALL--GACQIH 357 (548)
Q Consensus 281 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~-~~~~ll--~~~~~~ 357 (548)
. +.|+ ..+|+...|........+.|++++|+.--++.. +-|.. ++..+. .++...
T Consensus 277 ~--idP~-------------------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 277 N--IDPS-------------------NKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred c--CCcc-------------------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHH
Confidence 5 5555 335555556666666666777777666554443 33322 222222 334555
Q ss_pred CCHHHHHHHHHHHhhcCCC
Q 038673 358 RNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 358 ~~~~~a~~~~~~~~~~~p~ 376 (548)
++++.|.+-++...+...+
T Consensus 335 e~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 6666666666666664433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0087 Score=48.15 Aligned_cols=109 Identities=18% Similarity=0.083 Sum_probs=70.8
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHh
Q 038673 156 MVTGYVQNAKPREAIEYFERMQYAGVETD--YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYS 233 (548)
Q Consensus 156 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~ 233 (548)
+..++-..|+.++|+.+|++....|+..+ ...+..+.+.+...|++++|..+++......+.+..+..+...+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44566778888888888888888776554 2345667777888888888888888877654331123344444455667
Q ss_pred cCCCHHHHHHHHhcCCCCChhhhHHHHHHHH
Q 038673 234 KCGSIDDAYRIFVGMKQRNVFSYSSMILGFA 264 (548)
Q Consensus 234 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 264 (548)
..|+.++|...+-....++...|.--|..|+
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888877766554444444444444443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0055 Score=47.58 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=67.8
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCChhhHHHHHHHhhccC--------CcHHHHHHHHHHHHhCCCCCChh
Q 038673 19 LWTALIRGYILQGHLKDSISLYCSMRREGI-GPVSFTLSALFKACTEVL--------DVSLGQQIHAQTILLGGFTSDLY 89 (548)
Q Consensus 19 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~a~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 89 (548)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.++..+ +.|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~-lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNK-LKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhc-cCCcHH
Confidence 344556667777999999999999999999 899999999999977543 2345788999999998 999999
Q ss_pred HHHHHHHHHHH
Q 038673 90 VGNTMIGMYVK 100 (548)
Q Consensus 90 ~~~~li~~~~~ 100 (548)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0071 Score=57.32 Aligned_cols=139 Identities=12% Similarity=0.003 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISA-CAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
.+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.-.. +...|...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~---~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS---DPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT----HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC---CHHHHHHHH
Confidence 478888988888888999999999998543 2233334333333 33356777899999999887544 889999999
Q ss_pred HHHhcCCCHHHHHHHHhcCCC--C----ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038673 230 DMYSKCGSIDDAYRIFVGMKQ--R----NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVL 295 (548)
Q Consensus 230 ~~y~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 295 (548)
+.+.+.|+.+.|+.+|++... + -...|...+.-=.+.|+.+.+.++.+++.+ .-|+..++..++
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~ 147 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFS 147 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHH
Confidence 999999999999999999875 2 335899999999999999999999999988 345544433333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00057 Score=49.07 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=40.5
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 355 QIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 355 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
...|+++.|...++++.+.+|++...+..++.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567788888888888888888888888888888888888888888776543
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0062 Score=53.18 Aligned_cols=130 Identities=12% Similarity=0.036 Sum_probs=79.6
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHH
Q 038673 17 PFLWTALIRGYILQGHLKDSISLYCSMRREGIGPV--SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTM 94 (548)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 94 (548)
...|..+...+...|++++|...|++....+..+. ...+..+...+...|+++.|...+...++.. +.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHH
Confidence 34567777777788888888888888876432222 3466777777788888888888888887764 4456666677
Q ss_pred HHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCC
Q 038673 95 IGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAK 165 (548)
Q Consensus 95 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 165 (548)
..+|...|+...+..-++.. ...+++|.+.+.+....+...|..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A-----------------~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA-----------------EALFDKAAEYWKQAIRLAPNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH-----------------HHHHHHHHHHHHHHHhhCchhHHHHHHHHHhcCc
Confidence 77777766643333221110 0114555555555554444445555555554443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.31 Score=48.65 Aligned_cols=361 Identities=13% Similarity=0.126 Sum_probs=190.6
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHH
Q 038673 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNT 93 (548)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 93 (548)
-|+.+|+.||+-+-.. .++++.+.++++.. +-| ....|..-+..-....+++....+|.+.+..- .++..|..
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv---LnlDLW~l 91 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV---LNLDLWKL 91 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---hhHhHHHH
Confidence 3788999999976555 99999999999986 445 56678888899899999999999999998864 45777777
Q ss_pred HHHHHHH-cCChHHH----HHHHccCCC------CCeehHHHHHHH---------HHhCCChHHHHHHHccCCC-C--C-
Q 038673 94 MIGMYVK-CGFLGCS----RKVFDEMPE------RDVVSWTELIVA---------YANNGDMESAGGLFNELPL-K--D- 149 (548)
Q Consensus 94 li~~~~~-~g~~~~A----~~~~~~m~~------~~~~~~~~li~~---------~~~~g~~~~A~~~f~~m~~-~--~- 149 (548)
.++---+ .|+...+ .+.|+-..+ ..-..|+..+.- |..+.+++...+++.++.. | +
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 7764332 2333332 222322221 233446655543 4555677777778877752 2 1
Q ss_pred ------hhHHHHHHHHH-------HHCCChhHHHHHHHHHHH--CCCCCCHhh---------------HHHHHHHHHccC
Q 038673 150 ------KVAWTAMVTGY-------VQNAKPREAIEYFERMQY--AGVETDYVT---------------LVGVISACAQLG 199 (548)
Q Consensus 150 ------~~~~~~li~~~-------~~~g~~~~A~~l~~~m~~--~g~~p~~~t---------------~~~ll~~~~~~g 199 (548)
-..|..=|... -+...+..|.++++++.. .|+.-+..+ |-.+|.- -+..
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksN 250 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcC
Confidence 11222111111 123345567777776643 333222211 1112211 1111
Q ss_pred Chh---------HHHHHHHHH-HHcCCCCCChHhHHHH-------HHHHHhcCCCH-------HHHHHHHhcCCC----C
Q 038673 200 VIK---------YANWVCEIA-EGSGFGPINNVVVGSA-------LIDMYSKCGSI-------DDAYRIFVGMKQ----R 251 (548)
Q Consensus 200 ~~~---------~a~~~~~~~-~~~~~~p~~~~~~~~~-------li~~y~~~g~~-------~~A~~~~~~~~~----~ 251 (548)
.+. ...-+|++. .-.+..| .+|-- .-+.+...|+. +++..++++... .
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~p----eiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHP----EIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 111 111111111 1112221 11111 11122223332 233333333221 1
Q ss_pred ChhhhHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCH
Q 038673 252 NVFSYSSMILGFAMH---GRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCL 328 (548)
Q Consensus 252 ~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 328 (548)
+...|..+..---.. .+.+.....+++++.. ..+.|+ -+|..++..--|..-+
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~-----------------------~~~~~t-Lv~~~~mn~irR~eGl 382 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKI-----------------------EDIDLT-LVYCQYMNFIRRAEGL 382 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhh-----------------------hccCCc-eehhHHHHHHHHhhhH
Confidence 112222221110000 1123333334333321 111222 2466777777777777
Q ss_pred HHHHHHHHhCC---CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 038673 329 EEALKMVEKMP---VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLL 404 (548)
Q Consensus 329 ~~A~~~~~~m~---~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 404 (548)
..|..+|.+.+ ..+ ++.+.++++.-+ ..++.+.|.++|+..++..++++..-...+..+...++-..+..+|++.
T Consensus 383 kaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~ 461 (656)
T KOG1914|consen 383 KAARKIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERV 461 (656)
T ss_pred HHHHHHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 88888887774 223 455555555433 3567788888888888877777766666777777778888888888887
Q ss_pred HhCCCcc
Q 038673 405 KMTGLKK 411 (548)
Q Consensus 405 ~~~g~~~ 411 (548)
...++.+
T Consensus 462 l~s~l~~ 468 (656)
T KOG1914|consen 462 LTSVLSA 468 (656)
T ss_pred HhccCCh
Confidence 7765543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0077 Score=59.57 Aligned_cols=122 Identities=16% Similarity=0.074 Sum_probs=91.7
Q ss_pred CCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC----CChhh
Q 038673 180 GVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ----RNVFS 255 (548)
Q Consensus 180 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~ 255 (548)
+.+.+...+..++..+....+++.+..++-......-.-..-..+..+++..|.+.|..+.+..++..=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556677777788888777888888877776654211002344556888888888888888888876553 78888
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhc
Q 038673 256 YSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV 301 (548)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 301 (548)
+|.||..+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888888888777776
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0013 Score=46.67 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=51.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 318 MVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 318 li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
+...+.+.|++++|.+.|++.. ..|+ ...|..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567889999999999999884 5575 77788888999999999999999999999999874
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0074 Score=46.88 Aligned_cols=81 Identities=10% Similarity=0.036 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHccC--------ChhHHHHHHHHHHHcCCCCCChH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGV-ETDYVTLVGVISACAQLG--------VIKYANWVCEIAEGSGFGPINNV 222 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~ 222 (548)
|-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.|+..++.| +.
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP--~~ 104 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKP--ND 104 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCC--cH
Confidence 445566777777999999999999999999 999999999999877653 2345677888888888886 88
Q ss_pred hHHHHHHHHHhc
Q 038673 223 VVGSALIDMYSK 234 (548)
Q Consensus 223 ~~~~~li~~y~~ 234 (548)
.+|+.++..+.+
T Consensus 105 etYnivl~~Llk 116 (120)
T PF08579_consen 105 ETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHH
Confidence 999988887764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0015 Score=47.57 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=49.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 352 GACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
..+.+.++++.|.++++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467788899999999999999999999999999999999999999999998887543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00095 Score=50.33 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=19.2
Q ss_pred CChhHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHccCChhHHHHHHHH
Q 038673 164 AKPREAIEYFERMQYAGV-ETDYVTLVGVISACAQLGVIKYANWVCEI 210 (548)
Q Consensus 164 g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 210 (548)
|+++.|+.+|+++..... .|+...+..+..++.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445555555555544321 11222222344444444444444444444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.058 Score=51.31 Aligned_cols=213 Identities=14% Similarity=0.124 Sum_probs=116.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-----hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHH
Q 038673 19 LWTALIRGYILQGHLKDSISLYCSMRREGIGPV-----SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNT 93 (548)
Q Consensus 19 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 93 (548)
.|+.....|-..|++++|.+.|.+....-...+ ...|......+ +..+++.|.. .+..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~----------------~~~~ 99 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIE----------------CYEK 99 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHH----------------HHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHH----------------HHHH
Confidence 466666777777778877777776644110000 01122222222 1123333333 3444
Q ss_pred HHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhC-CChHHHHHHHccCC-------CC--ChhHHHHHHHHHHHC
Q 038673 94 MIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANN-GDMESAGGLFNELP-------LK--DKVAWTAMVTGYVQN 163 (548)
Q Consensus 94 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~f~~m~-------~~--~~~~~~~li~~~~~~ 163 (548)
.+..|...|++..|-+.+ ..+...|-.. |++++|.+.|.+.. .+ -...+..+...+.+.
T Consensus 100 A~~~y~~~G~~~~aA~~~-----------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCL-----------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHHCT-HHHHHHHH-----------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 455666666666665553 3344555555 66666666655542 11 123566778889999
Q ss_pred CChhHHHHHHHHHHHCCCC-----CCHh-hHHHHHHHHHccCChhHHHHHHHHHHHcC--CCCCChHhHHHHHHHHHhc-
Q 038673 164 AKPREAIEYFERMQYAGVE-----TDYV-TLVGVISACAQLGVIKYANWVCEIAEGSG--FGPINNVVVGSALIDMYSK- 234 (548)
Q Consensus 164 g~~~~A~~l~~~m~~~g~~-----p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~~~li~~y~~- 234 (548)
|++++|.++|++....-.. .+.. .|...+-++...|+...|.+.++...... +...........|+.+|-.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 9999999999988764322 2222 22333445566789999999998876543 3311234566677777765
Q ss_pred -CCCHHHHHHHHhcCCCCChhhhHHH
Q 038673 235 -CGSIDDAYRIFVGMKQRNVFSYSSM 259 (548)
Q Consensus 235 -~g~~~~A~~~~~~~~~~~~~~~~~l 259 (548)
...+++|..-|+.+.+-|..--..|
T Consensus 249 D~e~f~~av~~~d~~~~ld~w~~~~l 274 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSISRLDNWKTKML 274 (282)
T ss_dssp -CCCHHHHCHHHTTSS---HHHHHHH
T ss_pred CHHHHHHHHHHHcccCccHHHHHHHH
Confidence 3457888888888887665444333
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.011 Score=51.39 Aligned_cols=81 Identities=7% Similarity=-0.146 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET--DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSA 227 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 227 (548)
...|..+...+...|++++|+..|++.......| ...++..+...+...|+.++|...+..+...... ....+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~---~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF---LPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---cHHHHHH
Confidence 4566777777778888888888888776543222 1246677777778888888888888877765433 4555666
Q ss_pred HHHHHh
Q 038673 228 LIDMYS 233 (548)
Q Consensus 228 li~~y~ 233 (548)
+...|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 666666
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.014 Score=49.13 Aligned_cols=88 Identities=14% Similarity=0.029 Sum_probs=75.8
Q ss_pred HHHHHHcCCHHHHHHHHHhCC-CC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchH
Q 038673 319 VDLLGRAGCLEEALKMVEKMP-VE-PNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDD 396 (548)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 396 (548)
..-+-..|++++|..+|+-+- .. -+..-|..|-.+|...++++.|...|.....+.+++|..+...+.+|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 334457899999999998774 22 3466677888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 038673 397 VSRVRRLLKM 406 (548)
Q Consensus 397 a~~~~~~m~~ 406 (548)
|...|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999988765
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0021 Score=58.90 Aligned_cols=87 Identities=14% Similarity=0.118 Sum_probs=76.6
Q ss_pred HHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHH
Q 038673 320 DLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDV 397 (548)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 397 (548)
.-+.+.+++++|+..|.+.- +.|+ ++.|..--.+|.+.|.++.|.+-.+..+.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 34567899999999998874 6665 666677778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 038673 398 SRVRRLLKM 406 (548)
Q Consensus 398 ~~~~~~m~~ 406 (548)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999887654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.097 Score=48.38 Aligned_cols=55 Identities=7% Similarity=-0.150 Sum_probs=26.2
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHh
Q 038673 192 ISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFV 246 (548)
Q Consensus 192 l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~ 246 (548)
..-|.+.|.+.-|..-++.+++.-+.-.........++.+|.+.|..++|.++..
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3344455555555555555544322211334444455555555555555555443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.012 Score=51.18 Aligned_cols=92 Identities=14% Similarity=0.001 Sum_probs=63.1
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC--ChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHH
Q 038673 17 PFLWTALIRGYILQGHLKDSISLYCSMRREGIGP--VSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTM 94 (548)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 94 (548)
...|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...++..++.. +.....++.+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH
Confidence 3457777777888888888888888887643222 22467777778888888888888888887753 4445566666
Q ss_pred HHHHH-------HcCChHHHHHH
Q 038673 95 IGMYV-------KCGFLGCSRKV 110 (548)
Q Consensus 95 i~~~~-------~~g~~~~A~~~ 110 (548)
...|. +.|+++.|...
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~ 135 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAW 135 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHH
Confidence 66666 55565544444
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.008 Score=55.45 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQI---HRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
|...|-.|...|.+.|+++.|..-|.+.. +.| ++..+..+-.++.. .....++..+++++++++|.++.+...|+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 67889999999999999999999998774 444 46666666655433 33568899999999999999999999999
Q ss_pred HHHHHcCCchHHHHHHHHHHhCCCccCC
Q 038673 386 NIYASAGMWDDVSRVRRLLKMTGLKKNP 413 (548)
Q Consensus 386 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 413 (548)
..+...|++.+|...++.|.+..-..+|
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999876654333
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.056 Score=55.77 Aligned_cols=67 Identities=18% Similarity=0.128 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 313 DHYACMVDLLGRAGCLEEALKMVEKMP-VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
..|..+.-.....|++++|...+++.. +.|+...|..+...+...|+.++|...++++..++|.++.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 446656555556788888888888774 6778777777778888888888888888888888888773
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.033 Score=57.41 Aligned_cols=140 Identities=12% Similarity=0.022 Sum_probs=99.0
Q ss_pred CCChhHHHHHHHHHHHC--C---ChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHcc---C-----ChhHHHHHHHHHH
Q 038673 147 LKDKVAWTAMVTGYVQN--A---KPREAIEYFERMQYAGVETDY-VTLVGVISACAQL---G-----VIKYANWVCEIAE 212 (548)
Q Consensus 147 ~~~~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~---g-----~~~~a~~~~~~~~ 212 (548)
..|...|...+++.... + ....|..+|++..+. .||. ..+..+..++... + ++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 45788999998875443 2 366899999999875 5654 3344333332211 1 2233444444444
Q ss_pred HcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC--CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh
Q 038673 213 GSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK--QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVT 290 (548)
Q Consensus 213 ~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 290 (548)
.....| .+..++.++.-.+...|++++|...|++.. .++...|..+...+...|+.++|.+.+++... +.|...|
T Consensus 412 al~~~~-~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt 488 (517)
T PRK10153 412 ALPELN-VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENT 488 (517)
T ss_pred hcccCc-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCch
Confidence 433334 466888888888888899999999999987 46777888899999999999999999999987 6777666
Q ss_pred H
Q 038673 291 F 291 (548)
Q Consensus 291 ~ 291 (548)
|
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 5
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0008 Score=40.46 Aligned_cols=32 Identities=25% Similarity=0.509 Sum_probs=30.1
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHHcCCchHHH
Q 038673 367 ANHLFELEPDKIGNYIILSNIYASAGMWDDVS 398 (548)
Q Consensus 367 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 398 (548)
+++.++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.002 Score=46.23 Aligned_cols=63 Identities=21% Similarity=0.217 Sum_probs=51.8
Q ss_pred HHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 323 GRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 323 ~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
...|++++|+++|+++- ..| +...+..+..++...|++++|...++++...+|+++..+..+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 46899999999999884 456 5777778889999999999999999999999999875555444
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.068 Score=48.18 Aligned_cols=173 Identities=14% Similarity=0.056 Sum_probs=119.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHccCCCC--C--------hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHH
Q 038673 121 SWTELIVAYANNGDMESAGGLFNELPLK--D--------KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVG 190 (548)
Q Consensus 121 ~~~~li~~~~~~g~~~~A~~~f~~m~~~--~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 190 (548)
.|+.+++.+.-..-+++-...|+.-..+ . ....+.++....-.|.+.-.+.++++..+..-+.+......
T Consensus 138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~ 217 (366)
T KOG2796|consen 138 PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSG 217 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHH
Confidence 3455555554444444444444433322 2 23456677777778889899999999988765667777788
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCC---CChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHH
Q 038673 191 VISACAQLGVIKYANWVCEIAEGSGFGP---INNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFA 264 (548)
Q Consensus 191 ll~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 264 (548)
+.+.--..|+.+.|...++...+..-.- +....+.......|.-.+++..|...|++++. .|+..-|.-.-+..
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 8888889999999999999776543220 02344444555667778899999999998875 45566666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038673 265 MHGRAHAAIQLFGDMVKTETKPNGVTFIGVL 295 (548)
Q Consensus 265 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 295 (548)
..|+..+|++..+.|.. ..|...+-++++
T Consensus 298 Ylg~l~DAiK~~e~~~~--~~P~~~l~es~~ 326 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQ--QDPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHHHHHhc--cCCccchhhhHH
Confidence 77999999999999998 566666554444
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0087 Score=52.52 Aligned_cols=97 Identities=12% Similarity=0.113 Sum_probs=78.7
Q ss_pred HHHhccC--CCCCcchHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhcc-------------
Q 038673 6 RLVFEQV--KYKNPFLWTALIRGYILQ-----GHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV------------- 65 (548)
Q Consensus 6 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~------------- 65 (548)
...|++. ..+|-.+|..+|..|.+. |..+=....+..|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4567666 567888999999998865 56666777889999999999999999999887542
Q ss_pred ---CCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC
Q 038673 66 ---LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGF 103 (548)
Q Consensus 66 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 103 (548)
.+.+-|..++++|...| +-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~g-V~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNG-VMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHhccccH
Confidence 23467889999999998 99999999999999876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.086 Score=50.13 Aligned_cols=200 Identities=16% Similarity=0.095 Sum_probs=109.4
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHH----CCCCCC-HhhHHHHHHHHHccCChhHHHHHHHHHHH----cCCCCCChHh
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQY----AGVETD-YVTLVGVISACAQLGVIKYANWVCEIAEG----SGFGPINNVV 223 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~p~~~~~ 223 (548)
|......|-..|++++|...|.+... .+-+.+ ...|......+ +..++++|...+..+.. .|-.. .-..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~-~aA~ 115 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFS-QAAK 115 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HH-HHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHH-HHHH
Confidence 44455666667777777766665532 111111 11233333333 33477777777776653 33221 2345
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHhcCCC-----CC----hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 038673 224 VGSALIDMYSKC-GSIDDAYRIFVGMKQ-----RN----VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIG 293 (548)
Q Consensus 224 ~~~~li~~y~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 293 (548)
.+..+...|.+. |+++.|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-...+..
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~---- 191 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL---- 191 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc----
Confidence 677788888888 899999988887752 12 2345667788999999999999999988753322211
Q ss_pred HHHHHhhcCCccCCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC------hhHHHHHHHHHHhcCCH---HH
Q 038673 294 VLTACSHVGLKCYGVSPSTD-HYACMVDLLGRAGCLEEALKMVEKMP-VEPN------GGVWGALLGACQIHRNP---EI 362 (548)
Q Consensus 294 ll~a~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~------~~~~~~ll~~~~~~~~~---~~ 362 (548)
+.+.. .|-..+-.+...|++..|.+.+++.. ..|+ ......|+.+|.. ||. +.
T Consensus 192 ---------------~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~-~D~e~f~~ 255 (282)
T PF14938_consen 192 ---------------KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE-GDVEAFTE 255 (282)
T ss_dssp ---------------GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT-T-CCCHHH
T ss_pred ---------------chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh-CCHHHHHH
Confidence 11121 23334446666899999999998763 2232 3344555565543 343 34
Q ss_pred HHHHHHHHhhcC
Q 038673 363 AQIAANHLFELE 374 (548)
Q Consensus 363 a~~~~~~~~~~~ 374 (548)
+..-|+.+.+++
T Consensus 256 av~~~d~~~~ld 267 (282)
T PF14938_consen 256 AVAEYDSISRLD 267 (282)
T ss_dssp HCHHHTTSS---
T ss_pred HHHHHcccCccH
Confidence 444444443333
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.026 Score=45.43 Aligned_cols=105 Identities=11% Similarity=0.014 Sum_probs=70.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCC--hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCC---ChhHHHHHHHH
Q 038673 23 LIRGYILQGHLKDSISLYCSMRREGIGPV--SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTS---DLYVGNTMIGM 97 (548)
Q Consensus 23 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~ 97 (548)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++...... +. +..+...+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 44567778999999999999998876654 3456667777888899999999998887753 22 22333334445
Q ss_pred HHHcCChHHHHHHHccCCCCCeehHHHHHHHH
Q 038673 98 YVKCGFLGCSRKVFDEMPERDVVSWTELIVAY 129 (548)
Q Consensus 98 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 129 (548)
+...|+.++|.+.+-....++...|.--|..|
T Consensus 85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888776544433333444444443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.56 Score=45.13 Aligned_cols=101 Identities=13% Similarity=0.152 Sum_probs=70.3
Q ss_pred hhHHHHHHHHhhcCC--------ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCH
Q 038673 289 VTFIGVLTACSHVGL--------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNP 360 (548)
Q Consensus 289 ~t~~~ll~a~~~~~~--------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~ 360 (548)
.+.+..|.-|...|. .+..+ |+..-|-..+.+|+..++|++-.++... +-++..|..++.+|...|+.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHCCCH
Confidence 344444555554553 33444 6777788888888888888888776654 33568888888888888888
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 038673 361 EIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRR 402 (548)
Q Consensus 361 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 402 (548)
.+|.....++ .+..-+.+|.+.|+|.+|.+.--
T Consensus 254 ~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 254 KEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 8888777661 22456678888888888877643
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.014 Score=51.21 Aligned_cols=95 Identities=19% Similarity=0.232 Sum_probs=70.4
Q ss_pred HHccC--CCCChhHHHHHHHHHHHC-----CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC--------------
Q 038673 141 LFNEL--PLKDKVAWTAMVTGYVQN-----AKPREAIEYFERMQYAGVETDYVTLVGVISACAQLG-------------- 199 (548)
Q Consensus 141 ~f~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g-------------- 199 (548)
.|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+=+..
T Consensus 36 ~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hy 115 (228)
T PF06239_consen 36 LFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHY 115 (228)
T ss_pred HHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccC
Confidence 35544 456777777777777654 667777777888888888888889988888765421
Q ss_pred --ChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCC
Q 038673 200 --VIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGS 237 (548)
Q Consensus 200 --~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~ 237 (548)
+-+.|.+++++|...|+-| |..++..|++.+++.+.
T Consensus 116 p~Qq~c~i~lL~qME~~gV~P--d~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 116 PRQQECAIDLLEQMENNGVMP--DKETEQMLLNIFGRKSH 153 (228)
T ss_pred cHHHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHhccccH
Confidence 3467788888888888886 88888888888876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0042 Score=44.64 Aligned_cols=65 Identities=22% Similarity=0.221 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCC
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHR-NPEIAQIAANHLFELEP 375 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p 375 (548)
+...|..+...+...|++++|+..|++.- ..|+ ...|..+-.++...| ++++|.+.+++.++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45678889999999999999999998874 5565 777888888999999 79999999999999887
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.15 Score=43.63 Aligned_cols=95 Identities=14% Similarity=0.057 Sum_probs=56.5
Q ss_pred CCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC-----CCeehHH
Q 038673 49 GPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE-----RDVVSWT 123 (548)
Q Consensus 49 ~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 123 (548)
.|+..--..|..+....|+..+|...|++...-- +-.|....-.+.++....++...|...++++-+ +++.+.-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~-fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGI-FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc-cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 4555555556666777777777777777766544 666677777777777777777777776666543 2233333
Q ss_pred HHHHHHHhCCChHHHHHHHcc
Q 038673 124 ELIVAYANNGDMESAGGLFNE 144 (548)
Q Consensus 124 ~li~~~~~~g~~~~A~~~f~~ 144 (548)
.+...|...|+.+.|+.-|+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~ 185 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEV 185 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHH
Confidence 444444455555544444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0081 Score=59.41 Aligned_cols=97 Identities=11% Similarity=0.058 Sum_probs=49.3
Q ss_pred CChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCC-CCCChhHHHHHHHHHHHcCChHHHHHHHccCCC----CCeehHHH
Q 038673 50 PVSFTLSALFKACTEVLDVSLGQQIHAQTILLGG-FTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE----RDVVSWTE 124 (548)
Q Consensus 50 p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~ 124 (548)
.+...+..+++.+....+++.+..++-....... ...-..+..++|+.|.+.|..+.+..++..=.. ||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 3444455555555555555555555544443310 111223334555555555555555555554433 55555555
Q ss_pred HHHHHHhCCChHHHHHHHccCC
Q 038673 125 LIVAYANNGDMESAGGLFNELP 146 (548)
Q Consensus 125 li~~~~~~g~~~~A~~~f~~m~ 146 (548)
|+..+.+.|++..|.++...|.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHH
Confidence 5555555555555555555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.37 Score=49.05 Aligned_cols=76 Identities=17% Similarity=0.125 Sum_probs=47.9
Q ss_pred CCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHH
Q 038673 236 GSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHY 315 (548)
Q Consensus 236 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~ 315 (548)
|-.+-+.++-+++...+..+...+..-+.+...+.-|-++|..|-. .
T Consensus 730 gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------------------------------~ 776 (1081)
T KOG1538|consen 730 GWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------------------------------L 776 (1081)
T ss_pred cHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------------------------------H
Confidence 3334444444444444444555555555555666677777777654 3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCC-CCCCh
Q 038673 316 ACMVDLLGRAGCLEEALKMVEKMP-VEPNG 344 (548)
Q Consensus 316 ~~li~~~~~~g~~~~A~~~~~~m~-~~p~~ 344 (548)
..++++....+++.+|..+-++.| ..||+
T Consensus 777 ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhCccccccc
Confidence 457778888888888888888887 45553
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.072 Score=53.94 Aligned_cols=247 Identities=16% Similarity=0.131 Sum_probs=146.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHccC-----------CCCChhHHHHHHHHHHHCCC--hhHHHHHHHHHHHCCCCCCHhhH
Q 038673 122 WTELIVAYANNGDMESAGGLFNEL-----------PLKDKVAWTAMVTGYVQNAK--PREAIEYFERMQYAGVETDYVTL 188 (548)
Q Consensus 122 ~~~li~~~~~~g~~~~A~~~f~~m-----------~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~ 188 (548)
+.+=+..|...|.+++|.++---- ..-+...++.-=.+|.+-.+ +-+.+.-+++|++.|-.|+....
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl 638 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL 638 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH
Confidence 344444556666666665541110 01122334444456655443 33455556788888888887543
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--------------CChh
Q 038673 189 VGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--------------RNVF 254 (548)
Q Consensus 189 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------------~~~~ 254 (548)
...|+-.|.+.+|.++|. +.|.+ |..+.+|-....++.|.++...-.. .|+.
T Consensus 639 ---A~~~Ay~gKF~EAAklFk---~~G~e--------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k 704 (1081)
T KOG1538|consen 639 ---ADVFAYQGKFHEAAKLFK---RSGHE--------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIK 704 (1081)
T ss_pred ---HHHHHhhhhHHHHHHHHH---HcCch--------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC
Confidence 445677889999988885 34544 2345555555666666666544321 1111
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHH------HHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCH
Q 038673 255 SYSSMILGFAMHGRAHAAIQLFGD------MVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCL 328 (548)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~l~~~------m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 328 (548)
--.+-...+...|+.++|..+.-+ +.+-+.+.|. .+.++...+..-+.+...+
T Consensus 705 ePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~---------------------~ere~l~~~a~ylk~l~~~ 763 (1081)
T KOG1538|consen 705 EPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDK---------------------AEREPLLLCATYLKKLDSP 763 (1081)
T ss_pred CcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcch---------------------hhhhHHHHHHHHHhhcccc
Confidence 112334455667777777765422 1121111121 1334455555566677788
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchh----------HHHHHHHHHHcCCchHHH
Q 038673 329 EEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGN----------YIILSNIYASAGMWDDVS 398 (548)
Q Consensus 329 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~----------~~~l~~~~~~~g~~~~a~ 398 (548)
.-|-++|.+|. | ..+++......+++++|..+.++.-+..|+-... +.-.-.+|.++|+-.+|.
T Consensus 764 gLAaeIF~k~g---D---~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~ 837 (1081)
T KOG1538|consen 764 GLAAEIFLKMG---D---LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAV 837 (1081)
T ss_pred chHHHHHHHhc---c---HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHH
Confidence 88999999987 2 2456677788899999999999988876653222 223345788999999999
Q ss_pred HHHHHHHhCCC
Q 038673 399 RVRRLLKMTGL 409 (548)
Q Consensus 399 ~~~~~m~~~g~ 409 (548)
++++++....+
T Consensus 838 ~vLeQLtnnav 848 (1081)
T KOG1538|consen 838 QVLEQLTNNAV 848 (1081)
T ss_pred HHHHHhhhhhh
Confidence 99998865544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.027 Score=52.53 Aligned_cols=96 Identities=10% Similarity=0.039 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---chhHHH
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMP-VEPNG----GVWGALLGACQIHRNPEIAQIAANHLFELEPDK---IGNYII 383 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~ 383 (548)
...|..-+..+.+.|++++|...|+.+. ..|+. ..+-.+..++...|+++.|...|+.+.+..|++ +.++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3457777777777899999999998884 34553 355566688999999999999999999988875 456666
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhC
Q 038673 384 LSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 384 l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
++.+|...|++++|..+++...+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788899999999999999988653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=1.1 Score=46.31 Aligned_cols=248 Identities=14% Similarity=0.125 Sum_probs=150.5
Q ss_pred CCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCC--------CChhHHHHHHHHHHHcCChHHHHHHHccCCCCCee
Q 038673 49 GPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFT--------SDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVV 120 (548)
Q Consensus 49 ~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 120 (548)
.|.+..|..+..+....-+++.|...|-+.-...|++ .+...-.+=+.+| .|.+++|.+++-+|.++|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 3666667766665555555555555443322111110 1111112223333 4889999999988888774
Q ss_pred hHHHHHHHHHhCCChHHHHHHHccCCCC-----ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038673 121 SWTELIVAYANNGDMESAGGLFNELPLK-----DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISAC 195 (548)
Q Consensus 121 ~~~~li~~~~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 195 (548)
.|..+.+.|++-...++++.-... -...|+.+...++....+++|.+.|..-.. ....+.++
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecl 832 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECL 832 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHH
Confidence 456677788888888877654322 135788888888888888888888865321 12345555
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHH
Q 038673 196 AQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQL 275 (548)
Q Consensus 196 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 275 (548)
.+..++++-+.+...+ | .+....-.+.+++.+.|.-++|.+.|-+-..|- +-+..|...+++.+|.++
T Consensus 833 y~le~f~~LE~la~~L------p-e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 833 YRLELFGELEVLARTL------P-EDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred HHHHhhhhHHHHHHhc------C-cccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHH
Confidence 5655555544443332 3 466777888999999999999999887766553 345667788889999888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038673 276 FGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKM 338 (548)
Q Consensus 276 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 338 (548)
-++..- |...|..+--.+-. -.+.. ..--|..+-++|++-+|.+++.+|
T Consensus 901 aq~~~l----~qv~tliak~aaql---------l~~~~-~~eaIe~~Rka~~~~daarll~qm 949 (1189)
T KOG2041|consen 901 AQRFQL----PQVQTLIAKQAAQL---------LADAN-HMEAIEKDRKAGRHLDAARLLSQM 949 (1189)
T ss_pred HHhccc----hhHHHHHHHHHHHH---------Hhhcc-hHHHHHHhhhcccchhHHHHHHHH
Confidence 766432 33333221111100 00001 112356677788888888888887
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.011 Score=49.95 Aligned_cols=68 Identities=21% Similarity=0.202 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH-----hCCCccCC
Q 038673 346 VWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK-----MTGLKKNP 413 (548)
Q Consensus 346 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~ 413 (548)
....++..+...|+++.|...++.++..+|.+...|..++.+|...|+..+|.++++.+. +.|+.|.|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 445566778889999999999999999999999999999999999999999999998875 45776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0078 Score=38.72 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 038673 345 GVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSN 386 (548)
Q Consensus 345 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 386 (548)
.+|..+-.++...|++++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457778889999999999999999999999999888777653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.017 Score=56.72 Aligned_cols=97 Identities=11% Similarity=0.036 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKM-PVEPNG----GVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
+...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+-.+|...|+.++|...+++++++.+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 5667777778888888888888888774 466763 34777777888888888888888888776321 222111
Q ss_pred H--HHHHcCCchHHHHHHHHHHhCCCc
Q 038673 386 N--IYASAGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 386 ~--~~~~~g~~~~a~~~~~~m~~~g~~ 410 (548)
. .+....+.++..++++.+.+.|..
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1 112233445666777777776654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.29 Score=40.87 Aligned_cols=126 Identities=16% Similarity=0.146 Sum_probs=77.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcC
Q 038673 188 LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHG 267 (548)
Q Consensus 188 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 267 (548)
...++..+...+.......+++.+.+.+. .+....+.++..|++.+ .++....+.. ..+.......+..|.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~---~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS---ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc---cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcC
Confidence 34556666666777788888888777763 37778888888888653 3444455542 223344445666667777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHc-CCHHHHHHHHHhCCCCCChhH
Q 038673 268 RAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRA-GCLEEALKMVEKMPVEPNGGV 346 (548)
Q Consensus 268 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~ 346 (548)
.++++.-++.++.. |...++.+... ++++.|.+++.+-. +...
T Consensus 84 l~~~~~~l~~k~~~---------------------------------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~l 127 (140)
T smart00299 84 LYEEAVELYKKDGN---------------------------------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPEL 127 (140)
T ss_pred cHHHHHHHHHhhcC---------------------------------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHH
Confidence 77777777766543 33334444444 66777777776532 5556
Q ss_pred HHHHHHHHH
Q 038673 347 WGALLGACQ 355 (548)
Q Consensus 347 ~~~ll~~~~ 355 (548)
|..++..+.
T Consensus 128 w~~~~~~~l 136 (140)
T smart00299 128 WAEVLKALL 136 (140)
T ss_pred HHHHHHHHH
Confidence 666665554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.49 Score=43.73 Aligned_cols=54 Identities=9% Similarity=0.118 Sum_probs=42.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCC---chhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 352 GACQIHRNPEIAQIAANHLFELEPDK---IGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
.-|.+.|.+..|..-++.+++.-|+. +.+...+..+|...|..++|..+.+.+.
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 45777888888888888888866664 4566778888999999999988776653
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=1.1 Score=43.00 Aligned_cols=282 Identities=17% Similarity=0.108 Sum_probs=152.0
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHH--HHHcCChHHHHHHHccCCC-CCee--hHHHHHHHHHhCCChHHH
Q 038673 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGM--YVKCGFLGCSRKVFDEMPE-RDVV--SWTELIVAYANNGDMESA 138 (548)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~-~~~~--~~~~li~~~~~~g~~~~A 138 (548)
..||-..|++.-.+..+. +..|..-.-.|+.+ -.-.|++++|++-|+.|.. |... -...|.-.-.+.|+.+.|
T Consensus 96 gAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 96 GAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred ccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHH
Confidence 346666666665554433 34444444444433 2345888888888888865 3221 122333333466777777
Q ss_pred HHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC-CCCCHhh--HHHHHHHHHc---cCChhHHHHHHH
Q 038673 139 GGLFNELPLK---DKVAWTAMVTGYVQNAKPREAIEYFERMQYAG-VETDYVT--LVGVISACAQ---LGVIKYANWVCE 209 (548)
Q Consensus 139 ~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t--~~~ll~~~~~---~g~~~~a~~~~~ 209 (548)
...-+..... -.-.+.+.+...+..|+++.|+++++.-+... +.+|..- -..|+.+-+. ..+...|...-.
T Consensus 174 r~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 174 RHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 6665544322 23467777778888888888888887655432 3343321 1122222110 012222332222
Q ss_pred HHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 038673 210 IAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYS-SMILGFAMHGRAHAAIQLFGDMVKTETKPNG 288 (548)
Q Consensus 210 ~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 288 (548)
+..+. +||.+.-- .-..++.+.|+..++-.+++.+-+....|+.
T Consensus 254 ~a~KL-----------------------------------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i 298 (531)
T COG3898 254 EANKL-----------------------------------APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI 298 (531)
T ss_pred HHhhc-----------------------------------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH
Confidence 22222 22222211 1223556666666666666666654333332
Q ss_pred hhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHH--HH--HHHHhCCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 038673 289 VTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEE--AL--KMVEKMPVEPN-GGVWGALLGACQIHRNPEIA 363 (548)
Q Consensus 289 ~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~--A~--~~~~~m~~~p~-~~~~~~ll~~~~~~~~~~~a 363 (548)
. . ...+.+.|+-.. .. +-++.| +|| ..+.-.+..+....|++..|
T Consensus 299 a--------------------------~--lY~~ar~gdta~dRlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~A 348 (531)
T COG3898 299 A--------------------------L--LYVRARSGDTALDRLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAA 348 (531)
T ss_pred H--------------------------H--HHHHhcCCCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHH
Confidence 1 1 111223333111 11 112333 455 55666666888888999999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHc-CCchHHHHHHHHHHhCCCccCCce
Q 038673 364 QIAANHLFELEPDKIGNYIILSNIYASA-GMWDDVSRVRRLLKMTGLKKNPGY 415 (548)
Q Consensus 364 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~ 415 (548)
..-.+.+....|... .|..|.++-... |+-.++.+.+.+..+. +.+|.|
T Consensus 349 Ra~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPaW 398 (531)
T COG3898 349 RAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPAW 398 (531)
T ss_pred HHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCcc
Confidence 998888888888765 888888887555 8888888887766543 344543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.19 E-value=1.1 Score=43.97 Aligned_cols=66 Identities=12% Similarity=0.076 Sum_probs=39.5
Q ss_pred ccCCCCc----CHHHHHHHHHH--HHHcCCHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 038673 304 KCYGVSP----STDHYACMVDL--LGRAGCLEEALKMVEKM-PVEPNGGVWGALLGACQIHRNPEIAQIAANH 369 (548)
Q Consensus 304 ~~~~~~p----~~~~~~~li~~--~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 369 (548)
.+.|+.| +...-|.|.++ +-..|++.++.-.-.-+ .+.|++.+|+.+.-+.....++++|-..+..
T Consensus 448 ~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 448 TEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4455555 34455555554 34567777765443333 2567777777776666677777777666554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.022 Score=41.35 Aligned_cols=64 Identities=20% Similarity=0.206 Sum_probs=53.6
Q ss_pred HHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHH
Q 038673 319 VDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYI 382 (548)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 382 (548)
-..|.+.+++++|.+.++.+- ..|+ +..|...-..+...|+++.|...++++++..|+++....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 357889999999999999885 5565 666777778899999999999999999999998875443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.26 Score=47.41 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=43.0
Q ss_pred hHHHHHH--HHHhCCCchHHHHHHHHHHHCCCCC---ChhhHHHHHHHhhccCCcHHHHHHHHH
Q 038673 19 LWTALIR--GYILQGHLKDSISLYCSMRREGIGP---VSFTLSALFKACTEVLDVSLGQQIHAQ 77 (548)
Q Consensus 19 ~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~a~~~~~~~~~a~~~~~~ 77 (548)
++..-+. -+++.|+....+.+|+..++-|..- =...|..|-++|.-.+++++|.++|..
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 3444443 3788999999999999999877431 223467777788888889999888764
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.84 Score=39.21 Aligned_cols=100 Identities=14% Similarity=0.038 Sum_probs=68.8
Q ss_pred CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CChhh
Q 038673 181 VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----RNVFS 255 (548)
Q Consensus 181 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~ 255 (548)
+.|+...-..+..+..+.|+..+|...|++....-+- .|..+.-.+.++....++...|...++++-+ +.+.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA--~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFA--HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccC--CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 3555555566777777777777777777777655444 5677777777777777777777777776653 23344
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 256 YSSMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
.-.+...|...|.+.+|..-|+.....
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 555666777788888888888777763
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.13 Score=47.74 Aligned_cols=110 Identities=15% Similarity=0.066 Sum_probs=74.6
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH---ccCChhHHHHHHHHHHHcCCCCCChHhH
Q 038673 148 KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACA---QLGVIKYANWVCEIAEGSGFGPINNVVV 224 (548)
Q Consensus 148 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~---~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 224 (548)
.|...|-.|...|...|+.+.|..-|.+..+.. .++...+..+..++. ......++..+++++++.... ++.+
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~---~ira 229 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA---NIRA 229 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc---cHHH
Confidence 377888888888888888888888888876642 334444444444432 223456788888888877654 7777
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCC--CChhhhHHHHH
Q 038673 225 GSALIDMYSKCGSIDDAYRIFVGMKQ--RNVFSYSSMIL 261 (548)
Q Consensus 225 ~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 261 (548)
..-|...+...|++.+|...|+.|.+ |.-..|..+|.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 77777777777777777777777764 33344555554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.27 Score=44.46 Aligned_cols=124 Identities=12% Similarity=0.088 Sum_probs=88.5
Q ss_pred HHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC----CCeehHHHH-----
Q 038673 55 LSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE----RDVVSWTEL----- 125 (548)
Q Consensus 55 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~l----- 125 (548)
.+.++..+...+.+.-....+..+++.. .+.++.....|.++-.+.||.+.|...|+...+ -|..+.+.+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4456666667788888888888888876 677889999999999999999999999996543 233333333
Q ss_pred HHHHHhCCChHHHHHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHC
Q 038673 126 IVAYANNGDMESAGGLFNELPLK---DKVAWTAMVTGYVQNAKPREAIEYFERMQYA 179 (548)
Q Consensus 126 i~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 179 (548)
...|.-.+++.+|...|++++.. |++.-|.-.-+..-.|+...|++.++.|+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33456667777787777776633 4555555444555567778888888887764
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.79 E-value=2.2 Score=41.94 Aligned_cols=75 Identities=11% Similarity=0.077 Sum_probs=52.8
Q ss_pred HHhccCCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhC
Q 038673 7 LVFEQVKY--KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLG 82 (548)
Q Consensus 7 ~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 82 (548)
++=+++.. .|+.+|-.||+-|...|..++..+++++|..- ++-=..+|..-+++=....++.....+|.+.++..
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 44445542 37789999999999999999999999999752 22234556666665555667777777777776643
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.21 Score=46.56 Aligned_cols=102 Identities=16% Similarity=0.110 Sum_probs=77.0
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 038673 255 SYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKM 334 (548)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 334 (548)
.|..-+..+...|++++|+..|+.+++. .|+.. . ....+-.+..+|...|++++|...
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~------------------~--a~~A~y~LG~~y~~~g~~~~A~~~ 202 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDST------------------Y--QPNANYWLGQLNYNKGKKDDAAYY 202 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCc------------------c--hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4555555556679999999999999984 45431 1 123456788999999999999999
Q ss_pred HHhCC-CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 335 VEKMP-VEPN----GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 335 ~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
|+.+. ..|+ ...+-.+...+...|+.+.|...++.+++..|++.
T Consensus 203 f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 203 FASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 99884 2343 44454555677889999999999999999999876
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.69 E-value=3.4 Score=43.35 Aligned_cols=306 Identities=12% Similarity=0.022 Sum_probs=165.8
Q ss_pred CCCCCChhhHHH-----HHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC---hHHHHHHHccCCC-
Q 038673 46 EGIGPVSFTLSA-----LFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGF---LGCSRKVFDEMPE- 116 (548)
Q Consensus 46 ~g~~p~~~~~~~-----ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~- 116 (548)
-|++.+..-|.. ++.-+...+.+..|.++-..+--. ..-...++.....-+.+..+ -+.+..+=+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p--~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLP--ESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCc--cccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 466666555554 455556677788888887766321 11125677777777777632 3334444444544
Q ss_pred -CCeehHHHHHHHHHhCCChHHHHHHHccCCCC--------ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhh
Q 038673 117 -RDVVSWTELIVAYANNGDMESAGGLFNELPLK--------DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVT 187 (548)
Q Consensus 117 -~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 187 (548)
...++|..+..--...|+.+-|..+++.=+.. +..-+..-+.-..+.|+.+-...++-.|.+.- +...
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~ 580 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS 580 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH
Confidence 56778888888888999999999987654321 22234455556667777777777666654421 1111
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHc-CCCC----------------------------CChHhHHHHHHHHHhcCCCH
Q 038673 188 LVGVISACAQLGVIKYANWVCEIAEGS-GFGP----------------------------INNVVVGSALIDMYSKCGSI 238 (548)
Q Consensus 188 ~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~p----------------------------~~~~~~~~~li~~y~~~g~~ 238 (548)
|...+ .+.-.|..+|.+..+. +..- ..-........+.+.+....
T Consensus 581 l~~~l------~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~ 654 (829)
T KOG2280|consen 581 LFMTL------RNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEK 654 (829)
T ss_pred HHHHH------HhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhh
Confidence 11111 1122222333322221 1000 00001111122222222211
Q ss_pred HHHH----------HHHhcCCC-----CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC
Q 038673 239 DDAY----------RIFVGMKQ-----RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL 303 (548)
Q Consensus 239 ~~A~----------~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 303 (548)
.-.. ++++.+.. -.-.+.+--+.-+...|+..+|.++-++.+
T Consensus 655 s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----------------------- 711 (829)
T KOG2280|consen 655 SFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----------------------- 711 (829)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----------------------
Confidence 1000 01111100 001122222333344444444444433322
Q ss_pred ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHH
Q 038673 304 KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYII 383 (548)
Q Consensus 304 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 383 (548)
-||...|-.-+.+++..+++++-+++-++++ .+.-|.-++.+|.+.|+.++|.+.+.+.-.+ .-
T Consensus 712 -----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~e 775 (829)
T KOG2280|consen 712 -----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QE 775 (829)
T ss_pred -----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HH
Confidence 2556667777888888999998888887775 3677888889999999999888876654322 24
Q ss_pred HHHHHHHcCCchHHHHHH
Q 038673 384 LSNIYASAGMWDDVSRVR 401 (548)
Q Consensus 384 l~~~~~~~g~~~~a~~~~ 401 (548)
...+|.+.|++.+|.++-
T Consensus 776 kv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 776 KVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHHHhccHHHHHHHH
Confidence 667888889888888764
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.62 E-value=2.5 Score=41.50 Aligned_cols=93 Identities=13% Similarity=-0.036 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMP----VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNI 387 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 387 (548)
..+|.+.+....|..-++.|..+|-+.+ +.+++.++++++.-+ ..|+...|..+|+..+...|+++..-.-....
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3467788888888888999999998875 557788888888654 45788899999999999899887555566667
Q ss_pred HHHcCCchHHHHHHHHHH
Q 038673 388 YASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 388 ~~~~g~~~~a~~~~~~m~ 405 (548)
+.+.++-+.|..+|+.-.
T Consensus 476 Li~inde~naraLFetsv 493 (660)
T COG5107 476 LIRINDEENARALFETSV 493 (660)
T ss_pred HHHhCcHHHHHHHHHHhH
Confidence 778888888888888443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.11 Score=43.71 Aligned_cols=71 Identities=15% Similarity=0.242 Sum_probs=52.3
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHhhH
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVK-----TETKPNGVTF 291 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~ 291 (548)
-..+...++..+...|+++.|..+.+.+.. -|...|..+|.+|...|+..+|++.|+++.. .|+.|+..|-
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 344667788888899999999999998874 3567899999999999999999999988753 4777777653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.4 Score=42.99 Aligned_cols=61 Identities=16% Similarity=0.037 Sum_probs=41.3
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCC-C-ChhhHHHHHHHhhccCCcHHHHHHHHHHHHhC
Q 038673 22 ALIRGYILQGHLKDSISLYCSMRREGIG-P-VSFTLSALFKACTEVLDVSLGQQIHAQTILLG 82 (548)
Q Consensus 22 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 82 (548)
.....+.+.|++.+|.+.|+.+...-.. | -....-.+..++-..|+++.|...++..++.-
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3455567888999999999998875211 1 12345566777888889999998888888764
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.50 E-value=2.8 Score=41.28 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=44.0
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 038673 354 CQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLL 404 (548)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 404 (548)
+..+|++.++.-...-+.+..| ++.+|..++-++....++++|..++..+
T Consensus 472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 5678889888888888888999 7889999999999999999999999764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.47 E-value=2.8 Score=41.00 Aligned_cols=184 Identities=17% Similarity=0.086 Sum_probs=93.4
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCC--CCC-HhhHHHHHHHHHc---cCChhHHHHHHHHHHHcCCCCCChHhHHHHH
Q 038673 155 AMVTGYVQNAKPREAIEYFERMQYAGV--ETD-YVTLVGVISACAQ---LGVIKYANWVCEIAEGSGFGPINNVVVGSAL 228 (548)
Q Consensus 155 ~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~-~~t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 228 (548)
.++-+|....+++..+++.+.|..... .++ ...--...-|+.+ .|+.++|.+++..+....-. .++.++..+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~--~~~d~~gL~ 223 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN--PDPDTLGLL 223 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC--CChHHHHHH
Confidence 455567778888888888888865410 011 1111122223444 67788888888775554444 366666666
Q ss_pred HHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH---HHHHHHHhhcCCcc
Q 038673 229 IDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTF---IGVLTACSHVGLKC 305 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~~~~~ 305 (548)
...|-. .|.+....|.. ..++|+..|.+.-+ +.||..+= ..++....+.....
T Consensus 224 GRIyKD---------~~~~s~~~d~~-------------~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 224 GRIYKD---------LFLESNFTDRE-------------SLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETS 279 (374)
T ss_pred HHHHHH---------HHHHcCccchH-------------HHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccch
Confidence 665532 12221111111 15667766666544 33443321 11111111100000
Q ss_pred CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038673 306 YGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDK 377 (548)
Q Consensus 306 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 377 (548)
..+. ..-..+-..+++.|..+ -..|-.-+.+++.++.-.|+.+.|.+..+++.++.|+.
T Consensus 280 ~el~---~i~~~l~~llg~kg~~~----------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 280 EELR---KIGVKLSSLLGRKGSLE----------KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHH---HHHHHHHHHHHhhcccc----------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 0000 00011111222222111 12455566788899999999999999999999987763
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.41 E-value=4 Score=42.43 Aligned_cols=342 Identities=14% Similarity=0.069 Sum_probs=164.3
Q ss_pred CcchHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC-CCCCCh--hhHHH--H--HHHhhccCCcHHHHHH
Q 038673 2 DSFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRRE-GIGPVS--FTLSA--L--FKACTEVLDVSLGQQI 74 (548)
Q Consensus 2 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~~~~~--l--l~a~~~~~~~~~a~~~ 74 (548)
+++|.+..+. .|.+..|..+...-...-.++.|...|-+.... |++.-. .+..+ + ....+--|++++|.++
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 4566666665 455678998888877777888888888776542 332100 01000 0 0112234778888888
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC-----CCeehHHHHHHHHHhCCChHHHHHHHccCC---
Q 038673 75 HAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE-----RDVVSWTELIVAYANNGDMESAGGLFNELP--- 146 (548)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--- 146 (548)
+-.+-+.. .-|.++.+.|++-...++++.-.. .-..+|+.+...++....+++|.+.+..-.
T Consensus 757 yld~drrD----------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e 826 (1189)
T KOG2041|consen 757 YLDADRRD----------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTE 826 (1189)
T ss_pred hhccchhh----------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 76664443 335556666666666665544221 112345555555555555555554433211
Q ss_pred ----------------------CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHH
Q 038673 147 ----------------------LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYA 204 (548)
Q Consensus 147 ----------------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 204 (548)
+.|....-.|...+...|.-++|.+.|-+- + .| ...+..|....++.+|
T Consensus 827 ~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~a 897 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEA 897 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHH
Confidence 224445566677777777777777766432 2 12 1345566666677666
Q ss_pred HHHHHHHHHcCCCCCChHhHH--------------HHHHHHHhcCCCHHHHHHHHhcCCCCCh---hhhHHHHHHH----
Q 038673 205 NWVCEIAEGSGFGPINNVVVG--------------SALIDMYSKCGSIDDAYRIFVGMKQRNV---FSYSSMILGF---- 263 (548)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~~--------------~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~---- 263 (548)
.++-+...- + .+.+. ---|.++-+.|..-+|.+++.+|.++.. +.|--+-..|
T Consensus 898 velaq~~~l---~---qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~A 971 (1189)
T KOG2041|consen 898 VELAQRFQL---P---QVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGA 971 (1189)
T ss_pred HHHHHhccc---h---hHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHH
Confidence 655443211 0 11110 1124556666766666666666653211 1111111111
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHhhcCCccCCCC--cCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-
Q 038673 264 AMHGRAHAAIQLFGDMVKTETKPNGVT-FIGVLTACSHVGLKCYGVS--PSTDHYACMVDLLGRAGCLEEALKMVEKMP- 339 (548)
Q Consensus 264 ~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 339 (548)
.-..+..++++-.+....+|...+... ..+.+.+ .......+.- ....++-.|.+--...|..+.|++.--.+.
T Consensus 972 lLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~--~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~D 1049 (1189)
T KOG2041|consen 972 LLVENHRQTIKELRKIDKHGFLEDATDLLESGLLA--EQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSD 1049 (1189)
T ss_pred HHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhh--hHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhcc
Confidence 001122233333333333333322211 0000000 0000000000 123445555566677899998887654443
Q ss_pred ---CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038673 340 ---VEPNGGVWGALLGACQIHRNPEIAQIAANHLFE 372 (548)
Q Consensus 340 ---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 372 (548)
+-|-..+|..|.-+.+..+.+....++|-++..
T Consensus 1050 YEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1050 YEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 345566665555443344444445555544444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.031 Score=41.23 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC---CchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 346 VWGALLGACQIHRNPEIAQIAANHLFEL----EPD---KIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 346 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
+++.+-..+...|++++|...+++.+++ .++ ...++..++.+|...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444445555555555555555555441 111 13456667777777777777777776543
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.86 Score=36.74 Aligned_cols=132 Identities=14% Similarity=0.135 Sum_probs=78.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHH---------HHcCCHHHHHH
Q 038673 263 FAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLL---------GRAGCLEEALK 333 (548)
Q Consensus 263 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~---------~~~g~~~~A~~ 333 (548)
....|..++..++..+.... .+..-++.+|.-... ......++..+ ..+|++.....
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiD-----------aa~C~yvv~~LdsIGkiFDis~C~NlKrVi~ 77 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIID-----------AADCDYVVETLDSIGKIFDISKCGNLKRVIE 77 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHH-----------H--HHHHHHHHHHHGGGS-GGG-S-THHHHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecch-----------hhchhHHHHHHHHHhhhcCchhhcchHHHHH
Confidence 44568888999998888764 122222222221110 00111121111 23455555555
Q ss_pred HHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 038673 334 MVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 334 ~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 410 (548)
.+-.+. .+.......+......|.-+.-.+++..+.+.+..+|....-++++|.+.|+..++.+++++.-++|++
T Consensus 78 C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 78 CYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 555553 345566777888999999999999999988766667779999999999999999999999999999985
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.11 E-value=5.8 Score=42.57 Aligned_cols=82 Identities=9% Similarity=0.038 Sum_probs=50.8
Q ss_pred HHHHHHHH--HhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 038673 20 WTALIRGY--ILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGM 97 (548)
Q Consensus 20 ~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 97 (548)
|...+.++ .|.|+.++|..+++.....+.. |..|+..+-..|...+..+++..++++..+. -|+......+..+
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~---~P~eell~~lFma 119 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK---YPSEELLYHLFMA 119 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---CCcHHHHHHHHHH
Confidence 45555553 4567777777666665543322 5566666666667777777777777777664 2446666666666
Q ss_pred HHHcCChH
Q 038673 98 YVKCGFLG 105 (548)
Q Consensus 98 ~~~~g~~~ 105 (548)
|.+.+++.
T Consensus 120 yvR~~~yk 127 (932)
T KOG2053|consen 120 YVREKSYK 127 (932)
T ss_pred HHHHHHHH
Confidence 66666554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.26 Score=40.06 Aligned_cols=96 Identities=18% Similarity=0.219 Sum_probs=65.9
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 038673 252 NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEA 331 (548)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 331 (548)
|..++.++|.++++.|+.+....+.+..- |+.++...-..- -.....+.|+..+..+++.+|+..|++..|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~~~-------~~~~spl~Pt~~lL~AIv~sf~~n~~i~~a 71 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKEGD-------YPPSSPLYPTSRLLIAIVHSFGYNGDIFSA 71 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccccCc-------cCCCCCCCCCHHHHHHHHHHHHhcccHHHH
Confidence 34567778888888888877777775543 333332100000 113346789999999999999999999999
Q ss_pred HHHHHhC----CCCCChhHHHHHHHHHHh
Q 038673 332 LKMVEKM----PVEPNGGVWGALLGACQI 356 (548)
Q Consensus 332 ~~~~~~m----~~~p~~~~~~~ll~~~~~ 356 (548)
+++++.. ++.-+..+|..|+.-+..
T Consensus 72 l~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 72 LKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9998876 355568899999965443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.027 Score=41.50 Aligned_cols=60 Identities=12% Similarity=0.186 Sum_probs=34.1
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHhcCCC---------CC-hhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 222 VVVGSALIDMYSKCGSIDDAYRIFVGMKQ---------RN-VFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 222 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---------~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
..+++.+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555556666666666666555554431 11 34566666667777777777777766543
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.98 E-value=2.6 Score=37.78 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=35.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCc---hhHHHHHHHHHHcCCchHHH
Q 038673 351 LGACQIHRNPEIAQIAANHLFELEPDKI---GNYIILSNIYASAGMWDDVS 398 (548)
Q Consensus 351 l~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~ 398 (548)
..-|.+.|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..+.+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3557888899999999999999888864 35567888888888877443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.28 Score=41.43 Aligned_cols=92 Identities=11% Similarity=-0.048 Sum_probs=56.9
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc
Q 038673 155 AMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK 234 (548)
Q Consensus 155 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~ 234 (548)
....-+-+.|++++|..+|+-+...+ .-|..-+..|..++-..+++++|...|......+.. |+...--....|..
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~---dp~p~f~agqC~l~ 117 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN---DYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC---CCCccchHHHHHHH
Confidence 34444566777777777777766543 223333445555566667777777777776655543 44445556667777
Q ss_pred CCCHHHHHHHHhcCCC
Q 038673 235 CGSIDDAYRIFVGMKQ 250 (548)
Q Consensus 235 ~g~~~~A~~~~~~~~~ 250 (548)
.|+.+.|...|.....
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 7777777777666543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.76 E-value=6.8 Score=41.77 Aligned_cols=176 Identities=15% Similarity=0.087 Sum_probs=117.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHH----HHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 038673 121 SWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMV----TGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACA 196 (548)
Q Consensus 121 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 196 (548)
+...-|..+.+...++-|..+-+.-.. |..+...+. .-+.+.|++++|...|-+-... +.|. .++.-+.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfL 408 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFL 408 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhc
Confidence 345566777777788888877655432 233333333 3455789999999888765432 3332 3445555
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChh--hhHHHHHHHHhcCCHHHHHH
Q 038673 197 QLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVF--SYSSMILGFAMHGRAHAAIQ 274 (548)
Q Consensus 197 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~ 274 (548)
....+..-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.+..+.-. .... -....+..+.+.+-.++|.-
T Consensus 409 daq~IknLt~YLe~L~~~gla---~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA---NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc---cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHH
Confidence 666667777788888899988 77888899999999999999988888776 2222 13445555566666666665
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 275 LFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 275 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
+-.....+ -..+--.+-..|++++|++.++.+|
T Consensus 485 LA~k~~~h--------------------------------e~vl~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 485 LATKFKKH--------------------------------EWVLDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHhccC--------------------------------HHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 55443321 1223334556789999999999997
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.73 E-value=4.4 Score=39.23 Aligned_cols=284 Identities=16% Similarity=0.090 Sum_probs=178.4
Q ss_pred chHHHHHHHHHhC--CCchHHHHHHHHHHHCCCCCChhhHHHHHHHh--hccCCcHHHHHHHHHHHHhCCCCCChhHHHH
Q 038673 18 FLWTALIRGYILQ--GHLKDSISLYCSMRREGIGPVSFTLSALFKAC--TEVLDVSLGQQIHAQTILLGGFTSDLYVGNT 93 (548)
Q Consensus 18 ~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 93 (548)
.-|.+|-.++.-. |+-..|.++-.+-... +..|...+..|+.+- .-.|+.+.|++-|+.|+... +.-..-...
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP--EtRllGLRg 159 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP--ETRLLGLRG 159 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh--HHHHHhHHH
Confidence 3577777777654 6677777666554422 455777777777664 45699999999999997532 111111223
Q ss_pred HHHHHHHcCChHHHHHHHccCCC--CC-eehHHHHHHHHHhCCChHHHHHHHccCC-----CCChh--HHHHHHHHHHH-
Q 038673 94 MIGMYVKCGFLGCSRKVFDEMPE--RD-VVSWTELIVAYANNGDMESAGGLFNELP-----LKDKV--AWTAMVTGYVQ- 162 (548)
Q Consensus 94 li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~-----~~~~~--~~~~li~~~~~- 162 (548)
|.----+.|+.+.|+..-++.-+ |. .-.+.+.+...+..|+++.|+++.+.-. ++++. .-..|+.+-+.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 33333477899998888777654 33 3367889999999999999999988654 34433 22233332221
Q ss_pred --CCChhHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHH
Q 038673 163 --NAKPREAIEYFERMQYAGVETDYVTL-VGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSID 239 (548)
Q Consensus 163 --~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~ 239 (548)
..+...|...-.+. ..+.||.+.- .....++.+.|++.++-.+++.+-+..+.| +. .++..+.+.|+..
T Consensus 240 ~ldadp~~Ar~~A~~a--~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~i----a~lY~~ar~gdta 311 (531)
T COG3898 240 LLDADPASARDDALEA--NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DI----ALLYVRARSGDTA 311 (531)
T ss_pred HhcCChHHHHHHHHHH--hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HH----HHHHHHhcCCCcH
Confidence 23344455443333 3357776543 334567889999999999999999887665 32 2344556777643
Q ss_pred HH----HHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHH
Q 038673 240 DA----YRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHY 315 (548)
Q Consensus 240 ~A----~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~ 315 (548)
.. .+-+..|+..|..+--.+..+-...|++..|..--+.... . .|....|
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~------------------------~pres~~ 365 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--E------------------------APRESAY 365 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--h------------------------CchhhHH
Confidence 22 1345667777777777777777777877766655554443 2 3333445
Q ss_pred HHHHHHHHH-cCCHHHHHHHHHhC
Q 038673 316 ACMVDLLGR-AGCLEEALKMVEKM 338 (548)
Q Consensus 316 ~~li~~~~~-~g~~~~A~~~~~~m 338 (548)
..|.+.-.. .|+-.++...+.+.
T Consensus 366 lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 366 LLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHhhccCchHHHHHHHHHH
Confidence 555555443 37777777777655
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.68 E-value=3.6 Score=45.45 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=15.5
Q ss_pred CCChhHHHHHHHHHHHcC--ChHHHHHHHccCC
Q 038673 85 TSDLYVGNTMIGMYVKCG--FLGCSRKVFDEMP 115 (548)
Q Consensus 85 ~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~ 115 (548)
.|+ .-...+|..|.+.+ .++.|+....+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 444 33445666666665 5555555544433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.24 Score=45.29 Aligned_cols=109 Identities=12% Similarity=0.134 Sum_probs=82.2
Q ss_pred HHHhccCC--CCCcchHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccC------------
Q 038673 6 RLVFEQVK--YKNPFLWTALIRGYILQ-----GHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVL------------ 66 (548)
Q Consensus 6 ~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~------------ 66 (548)
++.|...+ ++|-.+|-+++..+... +..+=.-..++.|.+.|+.-|..+|+.||+.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 56777777 67888999999888654 455666677899999999999999999998875422
Q ss_pred ----CcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCh-HHHHHHHccCC
Q 038673 67 ----DVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFL-GCSRKVFDEMP 115 (548)
Q Consensus 67 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 115 (548)
.-+-+..++++|.-.| +.||..+-..|++++.+.+.. .+..++.-.|+
T Consensus 134 HYP~QQ~C~I~vLeqME~hG-VmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHG-VMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hCchhhhHHHHHHHHHHHcC-CCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2345778888888888 899999999999988887753 33444444444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.2 Score=48.21 Aligned_cols=93 Identities=11% Similarity=0.006 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc----C--CCCc
Q 038673 313 DHYACMVDLLGRAGCLEEALKMVEKM-------P-VEPNGGVWGALLGACQIHRNPEIAQIAANHLFEL----E--PDKI 378 (548)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~--p~~~ 378 (548)
..+..+..++.-.|+++.|.+.|+.. + -.....+.-+|-+.|....+++.|+..+.+-+.+ + ....
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 45666777788888888888887654 2 1122444556777777788899999888876552 1 2234
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 379 GNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 379 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
.++.+|+++|...|..+.|+.+...-.
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 589999999999999999988766554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.56 E-value=5 Score=39.16 Aligned_cols=252 Identities=11% Similarity=-0.066 Sum_probs=110.2
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCh-hhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 038673 24 IRGYILQGHLKDSISLYCSMRREGIGPVS-FTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCG 102 (548)
Q Consensus 24 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 102 (548)
-..+.+..++..|+..+...++.+ ||. .-|..-+..+...++++.+.--..+-++.. +.......-.-.++...+
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQCHLALS 131 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhhhhhhH
Confidence 344555667888888888888753 433 334444444445555555544333333321 111223333334444444
Q ss_pred ChHHHHHHHccCC---------------C-----CCeehHHHH-HHHHHhCCChHHHHHHHccCCCCChh-HHHHHHH--
Q 038673 103 FLGCSRKVFDEMP---------------E-----RDVVSWTEL-IVAYANNGDMESAGGLFNELPLKDKV-AWTAMVT-- 158 (548)
Q Consensus 103 ~~~~A~~~~~~m~---------------~-----~~~~~~~~l-i~~~~~~g~~~~A~~~f~~m~~~~~~-~~~~li~-- 158 (548)
+..+|.+.|+.-. . |.-.+|-.+ ..++.-.|+.++|.+.-..+.+-|.. .+...++
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~ 211 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGL 211 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccc
Confidence 5555554443111 0 111112111 12344556666665554333322222 2222222
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHH---HH----------HHHccCChhHHHHHHHHHHHcCCCC-CChHhH
Q 038673 159 GYVQNAKPREAIEYFERMQYAGVETDYVTLVGV---IS----------ACAQLGVIKYANWVCEIAEGSGFGP-INNVVV 224 (548)
Q Consensus 159 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~----------~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~ 224 (548)
++--.++.+.|...|++-+.. .||...-.++ .. -..+.|.+..|.+.|.+.+...+.- ..+...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 233345666666666665543 3443322211 11 1223455555555555554432210 013344
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHH---HHHHHhcCCHHHHHHHHHHHHH
Q 038673 225 GSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSM---ILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 225 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~ 281 (548)
|........+.|++.+|..--+....-|..-.-++ ..++...+++++|++-|+...+
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555444333221111 1223334455555555544443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.4 Score=39.00 Aligned_cols=81 Identities=14% Similarity=-0.047 Sum_probs=46.1
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHC---------------CCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHH
Q 038673 16 NPFLWTALIRGYILQGHLKDSISLYCSMRRE---------------GIGPVSFTLSALFKACTEVLDVSLGQQIHAQTIL 80 (548)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 80 (548)
|..++.++|.++++.|+.+....+.+..-.- ...|+..++.+++.+++..+++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3456788888899999988888877654321 1224444455555555555555555555554444
Q ss_pred hCCCCCChhHHHHHHH
Q 038673 81 LGGFTSDLYVGNTMIG 96 (548)
Q Consensus 81 ~~~~~~~~~~~~~li~ 96 (548)
.-+++-+..+|..|+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLE 96 (126)
T ss_pred HcCCCCCHHHHHHHHH
Confidence 4324444444544444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.73 Score=44.63 Aligned_cols=94 Identities=11% Similarity=0.022 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC-CC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHc
Q 038673 314 HYACMVDLLGRAGCLEEALKMVEKMP-VE-PNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASA 391 (548)
Q Consensus 314 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 391 (548)
.+..+.-.|.+.+++.+|++.-++.. .. +|....--=-.+|...|+++.|+..|+++++++|.|..+-.-|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 46778888999999999998887763 33 44555545557899999999999999999999999988888888777666
Q ss_pred CCchHH-HHHHHHHHhC
Q 038673 392 GMWDDV-SRVRRLLKMT 407 (548)
Q Consensus 392 g~~~~a-~~~~~~m~~~ 407 (548)
....+. .++|..|...
T Consensus 339 ~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 655544 6778888643
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.0024 Score=53.79 Aligned_cols=84 Identities=17% Similarity=0.167 Sum_probs=59.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHH
Q 038673 191 VISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAH 270 (548)
Q Consensus 191 ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 270 (548)
++..+.+.+.++....+++.+.+.+.. .+....+.++..|++.+..+...++++.... .-...++..+.+.|.++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~--~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKE--NNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC---SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccc--cCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 456666777888888888888876655 5788899999999999887888888774332 34455666777777777
Q ss_pred HHHHHHHHH
Q 038673 271 AAIQLFGDM 279 (548)
Q Consensus 271 ~A~~l~~~m 279 (548)
+|.-++.++
T Consensus 88 ~a~~Ly~~~ 96 (143)
T PF00637_consen 88 EAVYLYSKL 96 (143)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHc
Confidence 777666654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.25 E-value=2.4 Score=39.50 Aligned_cols=142 Identities=11% Similarity=0.066 Sum_probs=92.6
Q ss_pred HHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHH
Q 038673 240 DAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMV 319 (548)
Q Consensus 240 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li 319 (548)
...+.+++...+....--.-.......|+..+|..+|+..... .|. +...--.|+
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~--~~~-----------------------~~~~~~~la 175 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQA--APE-----------------------NSEAKLLLA 175 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHh--Ccc-----------------------cchHHHHHH
Confidence 3444445544432222222334567789999999999998873 222 234456688
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCChhHHHH---HHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchH
Q 038673 320 DLLGRAGCLEEALKMVEKMPVEPNGGVWGA---LLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDD 396 (548)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 396 (548)
..|...|+.++|..++..+|..-...-|.. -|....+.........+ +.-...+|++...-..|+..|...|+.++
T Consensus 176 ~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l-~~~~aadPdd~~aa~~lA~~~~~~g~~e~ 254 (304)
T COG3118 176 ECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDL-QRRLAADPDDVEAALALADQLHLVGRNEA 254 (304)
T ss_pred HHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 899999999999999999984433333333 23333333333333322 23334689999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 038673 397 VSRVRRLLKMT 407 (548)
Q Consensus 397 a~~~~~~m~~~ 407 (548)
|.+.+-.+.++
T Consensus 255 Ale~Ll~~l~~ 265 (304)
T COG3118 255 ALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHHh
Confidence 99887666544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.24 E-value=2.4 Score=42.86 Aligned_cols=131 Identities=14% Similarity=0.197 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHH
Q 038673 90 VGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREA 169 (548)
Q Consensus 90 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 169 (548)
-.+.++..+-+.|..+.|+.+-..- ..-.....+.|+++.|.++-++.. +...|..|.....++|+++-|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHH
Confidence 3566666666666666666652221 223334456666666666655544 455777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhc
Q 038673 170 IEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVG 247 (548)
Q Consensus 170 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 247 (548)
.+.|.+... +..++-.|...|+.+.-.++.+.....|- ++....++.-.|+.++..+++.+
T Consensus 367 e~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 367 EECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD--------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC--------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 777665432 34455555666666666666665555542 22223333334555555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.11 E-value=2.6 Score=34.10 Aligned_cols=65 Identities=18% Similarity=0.150 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFG 217 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 217 (548)
..+.-+.....+|+-+.-.+++.++.+.+ .++......+..||.+.|+..++.+++.++-+.|+.
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34455667777888888888887776533 667777778888888888888888888888887765
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.10 E-value=5.3 Score=44.27 Aligned_cols=234 Identities=12% Similarity=0.078 Sum_probs=116.6
Q ss_pred chHHHHHHHHHhCC--CchHHHHHHHHHHHCCCCCChh-h---------HHHHHHHhhccCCcHHHHHHHHHHHHhCCCC
Q 038673 18 FLWTALIRGYILQG--HLKDSISLYCSMRREGIGPVSF-T---------LSALFKACTEVLDVSLGQQIHAQTILLGGFT 85 (548)
Q Consensus 18 ~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~-~---------~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 85 (548)
.-.-.+|.+|++.+ ..++|+....+.....+.++.. . -+.+.+.....=|++.|..+.+.- +
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn~lfn~ALgtYDl~Lal~VAq~S------q 864 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVNELFNSALGTYDLDLALLVAQKS------Q 864 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHHHHHHhhhcccchHHHHHHHHHh------c
Confidence 34557788899987 6677777766666421111111 0 112222222223444444443322 2
Q ss_pred CChhHHHHHHHHHH-------------HcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhH
Q 038673 86 SDLYVGNTMIGMYV-------------KCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVA 152 (548)
Q Consensus 86 ~~~~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~ 152 (548)
.|+.-|-.+++-+- ..+++++|+.-+.++. ...|.-.++.--+.|.+.+|+.++..=.+.--..
T Consensus 865 kDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i 941 (1265)
T KOG1920|consen 865 KDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVI 941 (1265)
T ss_pred cChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhheeccCHHHHHHH
Confidence 23333322222221 1234555555544443 3344455555556666666666654333333344
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMY 232 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y 232 (548)
|.+....+.+.+.+++|.-+|+..-+ ..-.+.+|-..|++.++..+..++....-. -..+...|+.-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de---~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE---LVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH---HHHHHHHHHHHH
Confidence 55555555666777777776664421 123456677777777777777665332111 222235566666
Q ss_pred hcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHH
Q 038673 233 SKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLF 276 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 276 (548)
...++.-+|-++..+....-... +..|++...+++|+.+-
T Consensus 1010 ~e~~kh~eAa~il~e~~sd~~~a----v~ll~ka~~~~eAlrva 1049 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSDPEEA----VALLCKAKEWEEALRVA 1049 (1265)
T ss_pred HHcccchhHHHHHHHHhcCHHHH----HHHHhhHhHHHHHHHHH
Confidence 66777666666665554322222 22333334455555444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.51 Score=45.66 Aligned_cols=87 Identities=15% Similarity=0.085 Sum_probs=72.2
Q ss_pred HHHHHcCCHHHHHHHHHhCC--------C---------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHH
Q 038673 320 DLLGRAGCLEEALKMVEKMP--------V---------EPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYI 382 (548)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~m~--------~---------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 382 (548)
..|.+.|++..|..-|++.. . ..-..++..|..++.+.+.+..|.+..++.++++|+|.-+..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 46778899988888877631 1 111334566667788999999999999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHh
Q 038673 383 ILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 383 ~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
.-+.+|...|.++.|...|+++.+
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHH
Confidence 999999999999999999999865
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.51 Score=43.20 Aligned_cols=106 Identities=19% Similarity=0.205 Sum_probs=73.6
Q ss_pred HHccCC--CCChhHHHHHHHHHHHC-----CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC--------------
Q 038673 141 LFNELP--LKDKVAWTAMVTGYVQN-----AKPREAIEYFERMQYAGVETDYVTLVGVISACAQLG-------------- 199 (548)
Q Consensus 141 ~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g-------------- 199 (548)
.|.... ++|-.+|-+++..|... +..+-....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 56 ~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HY 135 (406)
T KOG3941|consen 56 QFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHY 135 (406)
T ss_pred hhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhC
Confidence 344444 45666676666666543 556666667788888899999999999888765432
Q ss_pred --ChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCH-HHHHHHHhcC
Q 038673 200 --VIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSI-DDAYRIFVGM 248 (548)
Q Consensus 200 --~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~ 248 (548)
.-+-+.+++++|...|+-| |-.+-..|++++++.+.. .+..+..--|
T Consensus 136 P~QQ~C~I~vLeqME~hGVmP--dkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 136 PQQQNCAIKVLEQMEWHGVMP--DKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred chhhhHHHHHHHHHHHcCCCC--chHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 3346788889999999886 888888888888887753 3333333333
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.01 E-value=9.5 Score=40.22 Aligned_cols=305 Identities=11% Similarity=-0.007 Sum_probs=174.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCc--HHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 038673 20 WTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDV--SLGQQIHAQTILLGGFTSDLYVGNTMIGM 97 (548)
Q Consensus 20 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 97 (548)
-..+|+-++..+.+..|+++-..+...-..- ...|.....-..+..+. +.+......-++.. . -....|....+-
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~ 516 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARR 516 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHH
Confidence 3456777888889999999887776421111 45566655555544322 22222222222221 2 234456677777
Q ss_pred HHHcCChHHHHHHHccCCCC--------CeehHHHHHHHHHhCCChHHHHHHHccCCCC-Chh--------------HHH
Q 038673 98 YVKCGFLGCSRKVFDEMPER--------DVVSWTELIVAYANNGDMESAGGLFNELPLK-DKV--------------AWT 154 (548)
Q Consensus 98 ~~~~g~~~~A~~~~~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~~~--------------~~~ 154 (548)
-..+|+.+-|..+++.=+.. +..-+...+.-..+.|+.+-...++-.+... +.. .|-
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~ 596 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYR 596 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHH
Confidence 77899999999998765531 3334455566666777777766665544321 111 121
Q ss_pred HHHH--------HHHHCCChhHHHHHHH--HHH----HCCCCCCHhhHHHHHHHHHccCChhHHHHH----------HHH
Q 038673 155 AMVT--------GYVQNAKPREAIEYFE--RMQ----YAGVETDYVTLVGVISACAQLGVIKYANWV----------CEI 210 (548)
Q Consensus 155 ~li~--------~~~~~g~~~~A~~l~~--~m~----~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~----------~~~ 210 (548)
-+++ .+-+.++..+++.-|. ... ..|..|+ ......++++........+. .+.
T Consensus 597 ~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~ 673 (829)
T KOG2280|consen 597 QFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRT 673 (829)
T ss_pred HHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 1111 1112222222222221 100 0122333 33344455544432211111 111
Q ss_pred HH-HcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh
Q 038673 211 AE-GSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGV 289 (548)
Q Consensus 211 ~~-~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 289 (548)
+. +.|.. ....+.+--+.-+...|+..+|.++-.+.+-||-..|---+.+++..+++++-+++-+.+..
T Consensus 674 Le~q~~~~--f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks-------- 743 (829)
T KOG2280|consen 674 LEDQFGGS--FVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS-------- 743 (829)
T ss_pred HHHHhccc--cccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC--------
Confidence 11 12322 12333444555666789999999999999999999999999999999999887776665432
Q ss_pred hHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 038673 290 TFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAAN 368 (548)
Q Consensus 290 t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 368 (548)
+.-|.-.+..+.+.|+.+||.+++.+.+-.+ -...+|.+.|++.+|.+..-
T Consensus 744 ----------------------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 744 ----------------------PIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred ----------------------CCCchhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHH
Confidence 1225556788889999999999998876222 45667788888877766543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.97 E-value=4.6 Score=36.49 Aligned_cols=206 Identities=13% Similarity=0.102 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDM 231 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~ 231 (548)
.|..-..+|-...++++|...+.+..+- ..-|...|. .....++|.-+.+++.+.. .-+..++--..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kls----Evvdl~eKAs~l 100 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLS----EVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHH
Confidence 4555556777778888887766665421 111221111 1223455556666665532 345667778888
Q ss_pred HhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcC
Q 038673 232 YSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPS 311 (548)
Q Consensus 232 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~ 311 (548)
|..+|..+.|-..+++.-+ ...+.++++|+++|++...- +.-+..+ ..-
T Consensus 101 Y~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralav-ve~~dr~------------------~ma 149 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAV-VEEDDRD------------------QMA 149 (308)
T ss_pred HHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHH-HhccchH------------------HHH
Confidence 8899988887766665421 23456778888888776542 1111111 111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC-------CCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCCCch
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMP-------VEPNG-GVWGALLGACQIHRNPEIAQIAANHLFE----LEPDKIG 379 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~p~~~~ 379 (548)
...|......|.+..++++|-..|.+-. -.|+. ..+-+.|-.+....++..|++.++.--+ ..|++..
T Consensus 150 ~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r 229 (308)
T KOG1585|consen 150 FELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSR 229 (308)
T ss_pred HHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHH
Confidence 2345666777888888888877666543 12332 2344555556666789999999888555 5566777
Q ss_pred hHHHHHHHHHHcCCchHHHHHH
Q 038673 380 NYIILSNIYASAGMWDDVSRVR 401 (548)
Q Consensus 380 ~~~~l~~~~~~~g~~~~a~~~~ 401 (548)
+...|+.+|- .|+.+++..+.
T Consensus 230 ~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 230 SLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhc-cCCHHHHHHHH
Confidence 8888887775 56777766654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.89 E-value=1.3 Score=36.56 Aligned_cols=70 Identities=20% Similarity=0.126 Sum_probs=52.2
Q ss_pred HHHHHHcCCHHHHHHHHHhCC----CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch-hHHHHHHHH
Q 038673 319 VDLLGRAGCLEEALKMVEKMP----VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG-NYIILSNIY 388 (548)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~----~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~ 388 (548)
.....+.|++++|.+.|+.+. ..| ....--.|+.++.+.++++.|...+++.++++|.++. .|.....++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 344557899999999999884 222 2344556778999999999999999999999998753 344444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.9 Score=45.92 Aligned_cols=108 Identities=19% Similarity=0.233 Sum_probs=71.3
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALK 333 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 333 (548)
.-.+.++.-+-+.|..+.|+++-++-.. -.++..+.|+++.|.+
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------------------------------rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPDH------------------------------------RFELALQLGNLDIALE 339 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HHH------------------------------------HHHHHHHCT-HHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChHH------------------------------------HhHHHHhcCCHHHHHH
Confidence 3466677777777777777776554322 1245567788888887
Q ss_pred HHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 334 MVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 334 ~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
+.++.. +...|..|-......|+.+.|++.+.+.. -+..|+-.|...|+.+...++.+....+|
T Consensus 340 ~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 340 IAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 776654 67788888888888888888888887754 45666677777787766666666555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.79 E-value=5.1 Score=39.21 Aligned_cols=154 Identities=13% Similarity=0.047 Sum_probs=86.8
Q ss_pred HHHHHHhCCChHHHHHHHccCCCC---Ch----hHHHHHHHHHHH---CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 038673 125 LIVAYANNGDMESAGGLFNELPLK---DK----VAWTAMVTGYVQ---NAKPREAIEYFERMQYAGVETDYVTLVGVISA 194 (548)
Q Consensus 125 li~~~~~~g~~~~A~~~f~~m~~~---~~----~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 194 (548)
++-.|....+++...++.+.+... +. ..--...-++-+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 334566667777777776666533 11 111122334445 67778888888775555556677777766665
Q ss_pred HHc---------cCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHH----HHHHHH---hcC------C--C
Q 038673 195 CAQ---------LGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSID----DAYRIF---VGM------K--Q 250 (548)
Q Consensus 195 ~~~---------~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~----~A~~~~---~~~------~--~ 250 (548)
|-. ...+++|...|.+.-+.. | +....-.++..+.-.|... +..++- ..+ . .
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~--~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFEIE--P--DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHcCC--c--cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 521 123566666666554443 2 3333333333333333311 222222 111 1 1
Q ss_pred CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 251 RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
.|-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34456678889999999999999999999975
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.64 Score=46.07 Aligned_cols=65 Identities=12% Similarity=-0.026 Sum_probs=54.3
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038673 148 KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY----VTLVGVISACAQLGVIKYANWVCEIAEGS 214 (548)
Q Consensus 148 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 214 (548)
.+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|++++|.+.++.+++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36778999999999999999999999987765 5653 35888888899999999999999888875
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.49 E-value=2.9 Score=42.92 Aligned_cols=76 Identities=17% Similarity=0.141 Sum_probs=32.8
Q ss_pred ChHHHHHHHccCCC--CCeehHHHHH-HHHHhCCChHHHHHHHccCCCC-------ChhHHHHHHHHHHHCCChhHHHHH
Q 038673 103 FLGCSRKVFDEMPE--RDVVSWTELI-VAYANNGDMESAGGLFNELPLK-------DKVAWTAMVTGYVQNAKPREAIEY 172 (548)
Q Consensus 103 ~~~~A~~~~~~m~~--~~~~~~~~li-~~~~~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~l 172 (548)
..+.|.++++.+.+ |+...|...- +.+...|++++|.+.|++.... ....+--+.-.+.-.++|++|...
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 34445555555544 4444443322 2334445555555555543211 111222233334444555555555
Q ss_pred HHHHHH
Q 038673 173 FERMQY 178 (548)
Q Consensus 173 ~~~m~~ 178 (548)
|..+.+
T Consensus 328 f~~L~~ 333 (468)
T PF10300_consen 328 FLRLLK 333 (468)
T ss_pred HHHHHh
Confidence 555544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.42 E-value=3.6 Score=42.21 Aligned_cols=158 Identities=18% Similarity=0.119 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCC-CCh---------hhhHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHh
Q 038673 224 VGSALIDMYSKCGSIDDAYRIFVGMKQ-RNV---------FSYSSMILGFAM----HGRAHAAIQLFGDMVKTETKPNGV 289 (548)
Q Consensus 224 ~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~---------~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ 289 (548)
....++...+=.|+-+.+.+.+....+ .++ ..|..++..++. ....+.|.+++..+.+ .-|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcH
Confidence 344556666666777777666665543 221 245555555444 3467888999999887 356654
Q ss_pred hHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCC------CCChhHHHHHHHHHHhcCCHHHH
Q 038673 290 TFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPV------EPNGGVWGALLGACQIHRNPEIA 363 (548)
Q Consensus 290 t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~p~~~~~~~ll~~~~~~~~~~~a 363 (548)
-| .-.-...+...|++++|.+.|++... +.....+--+...+....++++|
T Consensus 268 lf-----------------------l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 268 LF-----------------------LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred HH-----------------------HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 43 11223556678999999999996531 11223334444567788899999
Q ss_pred HHHHHHHhhcCCCCchhHHHH-HHHHHHcCCc-------hHHHHHHHHHHh
Q 038673 364 QIAANHLFELEPDKIGNYIIL-SNIYASAGMW-------DDVSRVRRLLKM 406 (548)
Q Consensus 364 ~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~-------~~a~~~~~~m~~ 406 (548)
...+..+.+...-+...|..+ +-+|...|+. ++|.+++++...
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999777666566544 4456777888 888888877654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=3.6 Score=41.02 Aligned_cols=90 Identities=13% Similarity=0.098 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchh--HHHHHH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGN--YIILSN 386 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--~~~l~~ 386 (548)
|......+..++.-.|+++.|..+|++.. +.|| ..+|...-..+.-.|+.++|.+.+++.++++|..... ....++
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~ 416 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVD 416 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence 45556666677777888999999998885 6787 5566655566777899999999999999999986433 333444
Q ss_pred HHHHcCCchHHHHHH
Q 038673 387 IYASAGMWDDVSRVR 401 (548)
Q Consensus 387 ~~~~~g~~~~a~~~~ 401 (548)
.|... ..++|.+++
T Consensus 417 ~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 417 MYVPN-PLKNNIKLY 430 (458)
T ss_pred HHcCC-chhhhHHHH
Confidence 56654 456666664
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.26 E-value=1.1 Score=41.18 Aligned_cols=93 Identities=19% Similarity=0.216 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC----C---CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---chhH
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKM----P---VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDK---IGNY 381 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m----~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~ 381 (548)
...|+.-++.| +.|++.+|..-|... | ..||..-| |..++...|+++.|...|..+.+-.|++ |..+
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 34677777666 567799999998876 2 44555555 7789999999999999999999966654 5688
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 382 IILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 382 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
.-|+.+..+.|+.++|..++++..++
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 89999999999999999999998754
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.16 E-value=4.3 Score=33.66 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=26.1
Q ss_pred HHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc
Q 038673 56 SALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKC 101 (548)
Q Consensus 56 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 101 (548)
..++..+...+.......+++.+++.+ ..+....|.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHH
Confidence 344555555555666666666666655 35566666666666654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.15 E-value=5 Score=34.34 Aligned_cols=132 Identities=11% Similarity=0.085 Sum_probs=75.3
Q ss_pred HHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcC--CHHHHHHHHHHHHHcC
Q 038673 206 WVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHG--RAHAAIQLFGDMVKTE 283 (548)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g 283 (548)
++.+.+.+.++.| +...+..+++.+.+.|++.....++.--.-+|....-..+-.+.... -..-|++++.++..
T Consensus 15 EYirSl~~~~i~~--~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~-- 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPV--QHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT-- 90 (167)
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh--
Confidence 3444455666664 66677777777777777777666665443333332222221111110 13344555555442
Q ss_pred CCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHH
Q 038673 284 TKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIA 363 (548)
Q Consensus 284 ~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a 363 (548)
.+..+++.+...|++-+|+++.++.. .-+...-..++.+..+.+|...-
T Consensus 91 ------------------------------~~~~iievLL~~g~vl~ALr~ar~~~-~~~~~~~~~fLeAA~~~~D~~lf 139 (167)
T PF07035_consen 91 ------------------------------AYEEIIEVLLSKGQVLEALRYARQYH-KVDSVPARKFLEAAANSNDDQLF 139 (167)
T ss_pred ------------------------------hHHHHHHHHHhCCCHHHHHHHHHHcC-CcccCCHHHHHHHHHHcCCHHHH
Confidence 37778889999999999999998864 12223334566666666665555
Q ss_pred HHHHHHHhh
Q 038673 364 QIAANHLFE 372 (548)
Q Consensus 364 ~~~~~~~~~ 372 (548)
-.+++...+
T Consensus 140 ~~V~~ff~~ 148 (167)
T PF07035_consen 140 YAVFRFFEE 148 (167)
T ss_pred HHHHHHHHH
Confidence 555444443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=4.1 Score=40.63 Aligned_cols=155 Identities=10% Similarity=0.112 Sum_probs=98.6
Q ss_pred CCHHHHHHHHhcCCCCCh---hhh--HHHHHHHHhc-----CCHHHHHHHHHHHHH-cCCCCCHhhHHHHHHHHhhcCCc
Q 038673 236 GSIDDAYRIFVGMKQRNV---FSY--SSMILGFAMH-----GRAHAAIQLFGDMVK-TETKPNGVTFIGVLTACSHVGLK 304 (548)
Q Consensus 236 g~~~~A~~~~~~~~~~~~---~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~~~~ 304 (548)
..+..++. -......+. ..| ..++.|.... ...+.|+.+|.+... +.+.|+...--+.+.-|-
T Consensus 232 ~~~~~~E~-~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h----- 305 (458)
T PRK11906 232 QTVHKPER-SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECH----- 305 (458)
T ss_pred hhhhhhhh-hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHH-----
Confidence 44444444 222323344 566 6666665542 235688889999882 236676543333332221
Q ss_pred cCCCCcCHHHHHHHHHHHH-HcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 038673 305 CYGVSPSTDHYACMVDLLG-RAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNY 381 (548)
Q Consensus 305 ~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 381 (548)
+......+. ......+|.++.++.. +.| |+.....+-.+....++.+.|...|++...++|+.+.+|
T Consensus 306 ----------~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~ 375 (458)
T PRK11906 306 ----------MSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLY 375 (458)
T ss_pred ----------HHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHH
Confidence 111111111 1334556666666553 333 466666666666777889999999999999999999999
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 382 IILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 382 ~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
...+....-.|+.++|.+.+++..+
T Consensus 376 ~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 376 YYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999999999999999887543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.84 E-value=3.6 Score=35.20 Aligned_cols=36 Identities=14% Similarity=-0.046 Sum_probs=23.5
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHH
Q 038673 38 SLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQ 73 (548)
Q Consensus 38 ~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~ 73 (548)
+.++.+.+.|++|+...+..+++.+.+.|.+..-.+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q 50 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ 50 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 444555566777777777777777777776554433
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.79 E-value=1.2 Score=35.89 Aligned_cols=90 Identities=20% Similarity=0.200 Sum_probs=74.3
Q ss_pred HHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----chhHHHHHHHHHHcCC
Q 038673 320 DLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDK----IGNYIILSNIYASAGM 393 (548)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~ 393 (548)
-++...|+++.|++.|.+.- +-| ....||.-..+++-.|+.++|..-+++.+++..+. -..|+.-+..|-..|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 46778999999999998774 333 58889999999999999999999999999954332 2367777788999999
Q ss_pred chHHHHHHHHHHhCCC
Q 038673 394 WDDVSRVRRLLKMTGL 409 (548)
Q Consensus 394 ~~~a~~~~~~m~~~g~ 409 (548)
-+.|..=|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999988877765
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.27 Score=29.16 Aligned_cols=32 Identities=25% Similarity=0.127 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038673 345 GVWGALLGACQIHRNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 345 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 376 (548)
.+|..+..++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666667777777777777777777777775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.44 Score=28.11 Aligned_cols=32 Identities=28% Similarity=0.212 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038673 346 VWGALLGACQIHRNPEIAQIAANHLFELEPDK 377 (548)
Q Consensus 346 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 377 (548)
.|..+-..+...|++++|.+.+++.++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 34455566667777777777777777776653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.95 E-value=15 Score=37.01 Aligned_cols=186 Identities=17% Similarity=0.196 Sum_probs=102.7
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMY 232 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y 232 (548)
...|-.+. +..+.+.-+++=++..+ +.||-.+...++ +--....+.++++++++..+.|-. ... ......
T Consensus 172 q~IMq~AW-RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~---~lg-~s~~~~-- 241 (539)
T PF04184_consen 172 QEIMQKAW-RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA---SLG-KSQFLQ-- 241 (539)
T ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH---hhc-hhhhhh--
Confidence 33344443 33334444444444433 355554433332 222345678889999888776532 000 000011
Q ss_pred hcCCCHHHHHHHHhcCCCCC----hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCC
Q 038673 233 SKCGSIDDAYRIFVGMKQRN----VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGV 308 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 308 (548)
..|. .++....++ +..-..+..+.-+.|+.++|++.|++|.+.. |...
T Consensus 242 -~~g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~--p~~~------------------- 293 (539)
T PF04184_consen 242 -HHGH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF--PNLD------------------- 293 (539)
T ss_pred -cccc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC--Cccc-------------------
Confidence 0111 111122222 2333446667778899999999999998742 2211
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCC--hhHHHHHHHHHHhcCC---------------HHHHHHHHHH
Q 038673 309 SPSTDHYACMVDLLGRAGCLEEALKMVEKMP-V-EPN--GGVWGALLGACQIHRN---------------PEIAQIAANH 369 (548)
Q Consensus 309 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~--~~~~~~ll~~~~~~~~---------------~~~a~~~~~~ 369 (548)
+......|+..|...+.+.++..++.+-. + -|. ...|+..+-..+..++ -..|.++..+
T Consensus 294 --~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~R 371 (539)
T PF04184_consen 294 --NLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHR 371 (539)
T ss_pred --hhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHH
Confidence 22346678899999999999999998875 2 244 4566665544443333 1235567777
Q ss_pred HhhcCCCCc
Q 038673 370 LFELEPDKI 378 (548)
Q Consensus 370 ~~~~~p~~~ 378 (548)
+.+.+|.-+
T Consensus 372 AvefNPHVp 380 (539)
T PF04184_consen 372 AVEFNPHVP 380 (539)
T ss_pred HHHhCCCCc
Confidence 777777655
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.88 E-value=11 Score=35.26 Aligned_cols=117 Identities=11% Similarity=0.049 Sum_probs=74.6
Q ss_pred HhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCC-CeehHH---HHHHHHHhCCChH
Q 038673 61 ACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPER-DVVSWT---ELIVAYANNGDME 136 (548)
Q Consensus 61 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~---~li~~~~~~g~~~ 136 (548)
.....+++..+...+....+.. +.+...--.|+.+|...|+.+.|..+++.++.. ....|. +-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4556788888888888888875 556677778888888899999999998888752 111121 2233333333333
Q ss_pred HHHHHHccCC-CC-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHC
Q 038673 137 SAGGLFNELP-LK-DKVAWTAMVTGYVQNAKPREAIEYFERMQYA 179 (548)
Q Consensus 137 ~A~~~f~~m~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 179 (548)
+...+-.+.. .| |...--.+...+...|+.++|++.+-.+.+.
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2222222222 23 5566667777788888888888777666554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.84 E-value=8.8 Score=34.09 Aligned_cols=62 Identities=27% Similarity=0.188 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 376 (548)
+..+...+...+.+++|...+.... ..|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 205 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 205 LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 3334444444444445544444432 2222 222222222222334445555555555544443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.82 E-value=8.9 Score=34.07 Aligned_cols=220 Identities=18% Similarity=0.121 Sum_probs=148.7
Q ss_pred CChhHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHH
Q 038673 164 AKPREAIEYFERMQYAGVE-TDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY 242 (548)
Q Consensus 164 g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~ 242 (548)
+....+...+......... .....+......+...+.+..+...+.........+ .....+..+...+...+++..+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLP-NLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHhhHHHHH
Confidence 4455555555555443221 124556666667777777777777777666521111 36677777777888888888888
Q ss_pred HHHhcCCC--CCh-hhhHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHH
Q 038673 243 RIFVGMKQ--RNV-FSYSSMIL-GFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACM 318 (548)
Q Consensus 243 ~~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~l 318 (548)
+.+..... ++. ........ .+...|+.+.|...+.+... ..|.. ......+...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~--------------------~~~~~~~~~~ 173 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPEL--------------------NELAEALLAL 173 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCc--------------------cchHHHHHHh
Confidence 88887764 221 22333333 68889999999999999855 33320 0011223333
Q ss_pred HHHHHHcCCHHHHHHHHHhCC-CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCch
Q 038673 319 VDLLGRAGCLEEALKMVEKMP-VEPN--GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWD 395 (548)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 395 (548)
...+...++.++|...+.+.. ..|+ ...+..+-..+...++.+.+...+.......|.....+..+...+...|.++
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYE 253 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHH
Confidence 334777899999999998774 3333 5677777888889999999999999999999886556777777777777889
Q ss_pred HHHHHHHHHHh
Q 038673 396 DVSRVRRLLKM 406 (548)
Q Consensus 396 ~a~~~~~~m~~ 406 (548)
++...+....+
T Consensus 254 ~~~~~~~~~~~ 264 (291)
T COG0457 254 EALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHH
Confidence 99988877654
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.71 E-value=6.9 Score=34.74 Aligned_cols=177 Identities=18% Similarity=0.174 Sum_probs=101.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChh-hhHHHHH--HHHhcCCHHHHHH
Q 038673 198 LGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVF-SYSSMIL--GFAMHGRAHAAIQ 274 (548)
Q Consensus 198 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~ 274 (548)
.|-...|+-=|.+..... | .-+.++|-|.--+...|+++.|.+.|+...+-|+. -|..+=+ ++.--|++.-|.+
T Consensus 78 lGL~~LAR~DftQaLai~--P-~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALAIR--P-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhhcC--C-CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 344444444444444433 5 47889999999999999999999999998875543 2322222 2334588888887
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH-HhCCCCCChhHHHHHHHH
Q 038673 275 LFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMV-EKMPVEPNGGVWGALLGA 353 (548)
Q Consensus 275 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~ 353 (548)
=|...-+. .|+.. -...|--+ --+.-++.+|..-+ ++.. +.|..-|...|-.
T Consensus 155 d~~~fYQ~--D~~DP---------------------fR~LWLYl---~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~ 207 (297)
T COG4785 155 DLLAFYQD--DPNDP---------------------FRSLWLYL---NEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVE 207 (297)
T ss_pred HHHHHHhc--CCCCh---------------------HHHHHHHH---HHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHH
Confidence 66665543 22211 11111111 11233455554433 3332 4555666665533
Q ss_pred HHh-cCCHHHHHHHHHHHhhcCCCC-------chhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 354 CQI-HRNPEIAQIAANHLFELEPDK-------IGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 354 ~~~-~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
+.- +=..+ .+++++.+...++ ..+|..|+.-|...|..++|..+|+.....
T Consensus 208 ~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 208 FYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 322 11112 2333333322222 248889999999999999999999987643
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.65 E-value=1.3 Score=37.26 Aligned_cols=53 Identities=23% Similarity=0.218 Sum_probs=31.9
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 355 QIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 355 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
...++.+.++.++..+.-+.|..+..-..-+..+...|+|.+|.++++.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 44556666666666666666666655555566666666666666666665443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.49 E-value=23 Score=38.09 Aligned_cols=138 Identities=9% Similarity=0.069 Sum_probs=84.2
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHH
Q 038673 27 YILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGC 106 (548)
Q Consensus 27 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 106 (548)
+-+.|++++|...|-+-+.. +.| ..+++-+........-..+++.+.+.| -.+..--+.|+.+|.+.++.++
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~g--la~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKG--LANSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcc--cccchhHHHHHHHHHHhcchHH
Confidence 34567788887777665532 223 234445555555556666677777777 4555566788999999999988
Q ss_pred HHHHHccCCCCCee-hHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHH
Q 038673 107 SRKVFDEMPERDVV-SWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERM 176 (548)
Q Consensus 107 A~~~~~~m~~~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 176 (548)
-.++.+...+-... -....+..+.+.+-.++|.-+-.+... +...... .+-..+++++|++.+..|
T Consensus 450 L~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 450 LTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 88888777632221 244556666666666666655443332 2222222 234457788888777665
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.34 E-value=4.7 Score=38.16 Aligned_cols=107 Identities=11% Similarity=0.003 Sum_probs=44.5
Q ss_pred CCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CCeehHH----HHHHHHHhCCChHHH
Q 038673 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---RDVVSWT----ELIVAYANNGDMESA 138 (548)
Q Consensus 66 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~----~li~~~~~~g~~~~A 138 (548)
|+..+|-..++++++. +|.|...++-.=++|.-.|+.+.-...++++.. +|...|. ...-++...|-+++|
T Consensus 117 g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4444444444444443 344444444444444444544444444444432 2322221 112233344555555
Q ss_pred HHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHH
Q 038673 139 GGLFNELPLK---DKVAWTAMVTGYVQNAKPREAIEYFE 174 (548)
Q Consensus 139 ~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~ 174 (548)
++.-++..+- |.-+-.+....+-.+|+..++.++..
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 5444443322 22223333334444455555544433
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.19 E-value=22 Score=37.96 Aligned_cols=209 Identities=17% Similarity=0.158 Sum_probs=89.9
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCc-------HHHHHHHHHHHHhCCCCCChh-
Q 038673 18 FLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDV-------SLGQQIHAQTILLGGFTSDLY- 89 (548)
Q Consensus 18 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~- 89 (548)
-.| ++|--+.|.|++++|.++...... ........|...++++....+- +....-+.+.++.. ...|++
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~-~~~DpyK 189 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS-TDGDPYK 189 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT--TTS-HHH
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC-CCCChHH
Confidence 356 467778899999999999866654 3556667788889988765332 34445555555443 222544
Q ss_pred --HHHHHHHHHHHcCChHHHH-HHHccC-----------CC--C------CeehHHHHHHHHHhCCChHHHHHHHccCCC
Q 038673 90 --VGNTMIGMYVKCGFLGCSR-KVFDEM-----------PE--R------DVVSWTELIVAYANNGDMESAGGLFNELPL 147 (548)
Q Consensus 90 --~~~~li~~~~~~g~~~~A~-~~~~~m-----------~~--~------~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 147 (548)
+|..+ ++|.-...-. .+...+ .+ + +..++..+=+...+-|. ..|.. .
T Consensus 190 ~AvY~il----g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge-----~~F~~--~ 258 (613)
T PF04097_consen 190 RAVYKIL----GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGE-----SHFNA--G 258 (613)
T ss_dssp HHHHHHH----HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-G-----GGCTT---
T ss_pred HHHHHHH----hcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhch-----hhccc--c
Confidence 33333 3332211100 110000 00 0 01122111111111110 11222 1
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHH
Q 038673 148 KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSA 227 (548)
Q Consensus 148 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 227 (548)
.++..| ...+.-.|+++.|++++.+ ..+...|.+.+...+.-+.-.+-.+... ..+....... +...-+..
T Consensus 259 ~~p~~Y---f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~-~~~ln~ar 329 (613)
T PF04097_consen 259 SNPLLY---FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGD-PPPLNFAR 329 (613)
T ss_dssp -----H---HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT----------------------------HHH
T ss_pred hhHHHH---HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCC-CCCcCHHH
Confidence 122222 3445667999999998876 2344667777776665543322221111 2222211110 01245677
Q ss_pred HHHHHhc---CCCHHHHHHHHhcCC
Q 038673 228 LIDMYSK---CGSIDDAYRIFVGMK 249 (548)
Q Consensus 228 li~~y~~---~g~~~~A~~~~~~~~ 249 (548)
||..|.+ ..+..+|.+.|--+.
T Consensus 330 LI~~Y~~~F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 330 LIGQYTRSFEITDPREALQYLYLIC 354 (613)
T ss_dssp HHHHHHHTTTTT-HHHHHHHHHGGG
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHH
Confidence 8888876 457788888776665
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.12 E-value=1.2 Score=41.55 Aligned_cols=61 Identities=23% Similarity=0.210 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 346 VWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 346 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
++..++..+...|+.+.+...++++++.+|-+...|..++.+|.+.|+...|++.++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3445566777888899999999999999999999999999999999999999999998875
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.79 E-value=0.37 Score=40.33 Aligned_cols=84 Identities=11% Similarity=0.049 Sum_probs=48.8
Q ss_pred HHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHH
Q 038673 58 LFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMES 137 (548)
Q Consensus 58 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 137 (548)
+++.+.+.+.+.....+++.+.+.+ ...+....+.|+..|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 4555666666667777777777655 455677777777777777766777776663332 222344444555555555
Q ss_pred HHHHHccC
Q 038673 138 AGGLFNEL 145 (548)
Q Consensus 138 A~~~f~~m 145 (548)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 55544443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.76 E-value=2.1 Score=39.38 Aligned_cols=97 Identities=8% Similarity=-0.101 Sum_probs=74.7
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCC--CChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCC-CCChhHHHHHH
Q 038673 19 LWTALIRGYILQGHLKDSISLYCSMRREGIG--PVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGF-TSDLYVGNTMI 95 (548)
Q Consensus 19 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li 95 (548)
.|+.-+.. .+.|++..|...|...++.... -....+-.|..++...|+++.|..+|..+.+.-+- +.-+...--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 48877765 4677899999999999985311 12345778899999999999999999999886411 22245666777
Q ss_pred HHHHHcCChHHHHHHHccCCC
Q 038673 96 GMYVKCGFLGCSRKVFDEMPE 116 (548)
Q Consensus 96 ~~~~~~g~~~~A~~~~~~m~~ 116 (548)
....+.|+.++|..+|+++.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 788899999999999988775
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.46 Score=28.76 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 380 NYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 380 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999998854
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.67 E-value=1.6 Score=36.15 Aligned_cols=54 Identities=20% Similarity=0.190 Sum_probs=39.0
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 355 QIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 355 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
...++.+.++.+++.+.-+.|+.+..-..-+..+...|+|++|.++++...+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 346677777777777777777777777777777777777777777777776554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=90.67 E-value=6 Score=30.25 Aligned_cols=60 Identities=25% Similarity=0.273 Sum_probs=42.3
Q ss_pred HHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHH
Q 038673 127 VAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLV 189 (548)
Q Consensus 127 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 189 (548)
..+...|++++|..+.+.+..||...|-++-.. +.|..+++..-+.+|..+| .|...+|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 456677888888888888888888888776553 5666677777777777776 55554543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.31 E-value=14 Score=33.79 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=44.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCc---hhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 352 GACQIHRNPEIAQIAANHLFELEPDKI---GNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
.-|.+.|.+..|..-++.+++.-|+.+ ..+..|.++|...|..++|...-+-+..
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 567899999999999999999766643 4666788889999999999988776643
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.04 E-value=0.36 Score=28.85 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=23.6
Q ss_pred HHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHH
Q 038673 208 CEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY 242 (548)
Q Consensus 208 ~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~ 242 (548)
|+++++.. | .+..+|+.|...|...|++++|+
T Consensus 2 y~kAie~~--P-~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN--P-NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC--C-CCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455555 4 48888888888888888888875
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.96 E-value=18 Score=34.28 Aligned_cols=118 Identities=8% Similarity=0.012 Sum_probs=59.0
Q ss_pred HhCCCchHHHHHHHHHHHCC--CCCChh------hHHHHHHHhhccC-CcHHHHHHHHHHHHh----C---CCCCCh---
Q 038673 28 ILQGHLKDSISLYCSMRREG--IGPVSF------TLSALFKACTEVL-DVSLGQQIHAQTILL----G---GFTSDL--- 88 (548)
Q Consensus 28 ~~~g~~~~A~~~~~~m~~~g--~~p~~~------~~~~ll~a~~~~~-~~~~a~~~~~~~~~~----~---~~~~~~--- 88 (548)
.+.|+.+.|...+.+....- ..|+.. .|+.-.. ....+ +++.|...+++..+. + ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46788999999998877632 233322 1222222 23344 777776666655443 2 122222
Q ss_pred --hHHHHHHHHHHHcCChHH---HHHHHccCCC--CC-eehHHHHHHHHHhCCChHHHHHHHccCC
Q 038673 89 --YVGNTMIGMYVKCGFLGC---SRKVFDEMPE--RD-VVSWTELIVAYANNGDMESAGGLFNELP 146 (548)
Q Consensus 89 --~~~~~li~~~~~~g~~~~---A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~ 146 (548)
.+...|+.+|...+..+. |.++++.+.. ++ +.++-.-+..+.+.++.+++.+.+.+|.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 345566666666665443 3334333322 22 2333333444444555555555555544
|
It is also involved in sporulation []. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.73 E-value=17 Score=33.87 Aligned_cols=98 Identities=13% Similarity=0.075 Sum_probs=71.0
Q ss_pred CCcCHHHHHHHHHHHHH-cCCHHHHHHHHHhCC---CC-------CC-----hhHHHHHH----HHHHhcCCHHHHHHHH
Q 038673 308 VSPSTDHYACMVDLLGR-AGCLEEALKMVEKMP---VE-------PN-----GGVWGALL----GACQIHRNPEIAQIAA 367 (548)
Q Consensus 308 ~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~---~~-------p~-----~~~~~~ll----~~~~~~~~~~~a~~~~ 367 (548)
.+-|..-|...+...-+ ...++++.+++...+ +. -| ..+|..++ +.|...|.+.+|.++.
T Consensus 223 ~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~ 302 (361)
T COG3947 223 PKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLH 302 (361)
T ss_pred ccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 44466666666554432 345677777666552 00 11 22344444 6789999999999999
Q ss_pred HHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 368 NHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 368 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
++++.++|-+...+..|++.|+..|+--+|.+-++++.
T Consensus 303 qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 303 QRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 99999999999999999999999999888887777765
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.70 E-value=16 Score=33.47 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=15.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 038673 261 LGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 261 ~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
.-|.+.|.+..|..-+++|++.
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhc
Confidence 4566677777777777777764
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.64 E-value=19 Score=34.12 Aligned_cols=195 Identities=10% Similarity=-0.006 Sum_probs=94.2
Q ss_pred CCChhHHHHHHHHHHHCCCh----hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChh--HHHHHHHHHHHcCCCCCC
Q 038673 147 LKDKVAWTAMVTGYVQNAKP----REAIEYFERMQYAGVETDYVTLVGVISACAQLGVIK--YANWVCEIAEGSGFGPIN 220 (548)
Q Consensus 147 ~~~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~p~~ 220 (548)
.+|...-...+.++.+.|+. ++++.++..+... .||...-...+.+++..+... ........+...-.. .
T Consensus 65 ~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D--~ 140 (280)
T PRK09687 65 SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD--K 140 (280)
T ss_pred CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC--C
Confidence 34445555555555555543 3556666655332 344444444555554443211 011122222222122 2
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHG-RAHAAIQLFGDMVKTETKPNGVTFIGVLTACS 299 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 299 (548)
+..+-...+.++++.|+.+....+..-+..+|...-..-+.++...+ +...+...+..+..
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~------------------ 202 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ------------------ 202 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc------------------
Confidence 45566666777777776444433444444455544444444444432 13345555555443
Q ss_pred hcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038673 300 HVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 300 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 376 (548)
.++..+-...+.++++.|+..-.-.+++.+. .++ .....+.++...|+. .|...+..+.+.+|+
T Consensus 203 ---------D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d 266 (280)
T PRK09687 203 ---------DKNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDD 266 (280)
T ss_pred ---------CCChHHHHHHHHHHHccCChhHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCC
Confidence 1233444555666677776433333333333 233 233555667777764 577777777665663
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.57 E-value=2.2 Score=37.23 Aligned_cols=89 Identities=16% Similarity=0.094 Sum_probs=69.7
Q ss_pred HHHHHcCCHHHHHHHHHhCC-CCCC-hh-----HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC
Q 038673 320 DLLGRAGCLEEALKMVEKMP-VEPN-GG-----VWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAG 392 (548)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~m~-~~p~-~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 392 (548)
.-+.+.|++++|..-|.... .-|. .. .|..-..+..+.+..+.|+.-..+.++++|.+..+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 34567899999998887663 2233 22 22223356788999999999999999999998888888889999999
Q ss_pred CchHHHHHHHHHHhCC
Q 038673 393 MWDDVSRVRRLLKMTG 408 (548)
Q Consensus 393 ~~~~a~~~~~~m~~~g 408 (548)
++++|++=++.+.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999987644
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.36 E-value=0.98 Score=28.74 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 038673 19 LWTALIRGYILQGHLKDSISLYCSMRRE 46 (548)
Q Consensus 19 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 46 (548)
.|..+...|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666666666666653
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.15 E-value=5.3 Score=32.31 Aligned_cols=50 Identities=12% Similarity=-0.033 Sum_probs=23.7
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccC
Q 038673 63 TEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEM 114 (548)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 114 (548)
+..|+++.|.+.|.+.+.. .+.....||.-..+|--.|+.++|++-+++.
T Consensus 54 aE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~A 103 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKA 103 (175)
T ss_pred HhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHH
Confidence 3444555555555544443 2344444555555554455554444444443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.10 E-value=18 Score=34.27 Aligned_cols=62 Identities=13% Similarity=-0.047 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 346 VWGALLGACQIHRNPE---IAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 346 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
+...+..++...+..+ +|..+.+.+..-.|+.+..+..-+.++.+.++.+++.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4555556666666544 3444555555566777777777777777777777777777777643
|
It is also involved in sporulation []. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.82 E-value=13 Score=31.38 Aligned_cols=90 Identities=18% Similarity=0.093 Sum_probs=61.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-C
Q 038673 262 GFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-V 340 (548)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 340 (548)
.-...++.+++..++..|.- ++|..... -..-...+.+.|++.+|.++|+++. -
T Consensus 19 ~al~~~~~~D~e~lL~ALrv--LRP~~~e~-----------------------~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV--LRPEFPEL-----------------------DLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHccCChHHHHHHHHHHHH--hCCCchHH-----------------------HHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34567789999999999887 56664432 2223345678999999999999986 3
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038673 341 EPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 341 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 376 (548)
.|....-..|+..|.....-..-....+.+++..++
T Consensus 74 ~~~~p~~kALlA~CL~~~~D~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 74 APGFPYAKALLALCLYALGDPSWRRYADEVLESGAD 109 (160)
T ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHhcCCC
Confidence 344555567777776666555566666666665553
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.72 E-value=1 Score=27.16 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQ 177 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~ 177 (548)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46667777777777777777777643
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.57 E-value=2.9 Score=39.07 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=58.1
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHhhH
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVK-----TETKPNGVTF 291 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~ 291 (548)
-..++..++..+..+|+.+.+...++++.. -+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 556788899999999999999999998875 3667899999999999999999999998876 3455544443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.67 E-value=10 Score=32.44 Aligned_cols=118 Identities=18% Similarity=0.132 Sum_probs=52.2
Q ss_pred HhCCChHHHHHHHccCCCCChhHHHHHH-----HHHHHCCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHH--HHccCCh
Q 038673 130 ANNGDMESAGGLFNELPLKDKVAWTAMV-----TGYVQNAKPREAIEYFERMQYAGVETDYV-TLVGVISA--CAQLGVI 201 (548)
Q Consensus 130 ~~~g~~~~A~~~f~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~--~~~~g~~ 201 (548)
++.|..++|+.-|..+.+.+--.|-.|. ....+.|+..+|...|++.-...-.|-.. -...|=.+ +...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3444445555555554433333332222 23445566666666666654433233222 11111111 2344555
Q ss_pred hHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 202 KYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 202 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
++...-.+-+...+-. .....-.+|.-+-.+.|++.+|.+.|..+.
T Consensus 149 ~dV~srvepLa~d~n~--mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 149 DDVSSRVEPLAGDGNP--MRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHhhhccCCCCh--hHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 5444444333222221 334444555555556666666666665554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.51 E-value=8.3 Score=36.59 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=21.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcC
Q 038673 265 MHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302 (548)
Q Consensus 265 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 302 (548)
-.|+..+|-..++++++. .+.|-..+.-.=.+|...|
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G 151 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNG 151 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhcc
Confidence 367788888888888874 3334344433334444444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.40 E-value=10 Score=32.98 Aligned_cols=96 Identities=16% Similarity=0.079 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChH------
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYV--TLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNV------ 222 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~------ 222 (548)
..+..+...|.+.|+.++|++.|.++......|... .+-.++..+...+++..+.....++...-..+ .+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~-~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG-GDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc-chHHHHHHH
Confidence 367777888888888888888888887765444332 35566777777788887777776665432221 122
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 223 VVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 223 ~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
.+|..|. +...+++..|-+.|-...
T Consensus 116 k~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHH--HHHhchHHHHHHHHHccC
Confidence 2222222 233567777777776654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.34 E-value=3.8 Score=31.10 Aligned_cols=62 Identities=13% Similarity=0.025 Sum_probs=46.8
Q ss_pred chHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 038673 33 LKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIG 96 (548)
Q Consensus 33 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 96 (548)
.-++.+-++.+....+.|++....+.++||.+.+|+..|.++++-+.... ..+...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~--~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC--GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cCchhhHHHHHH
Confidence 34566667777777888999999999999999999999999999776332 224456666554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=87.11 E-value=10 Score=36.44 Aligned_cols=221 Identities=12% Similarity=0.004 Sum_probs=129.4
Q ss_pred HHhCCCchHHHHHHHHHHHCC--CCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhC-CCCCC---hhHHHHHHHHHHH
Q 038673 27 YILQGHLKDSISLYCSMRREG--IGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLG-GFTSD---LYVGNTMIGMYVK 100 (548)
Q Consensus 27 ~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~---~~~~~~li~~~~~ 100 (548)
+.+..+.++|+..+.+-..+- ..--..+|..+..+.+..|.++++...--..++.- ..... ...|-.|.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666766666555421 11123466666677777777666554332222211 01112 2345566666666
Q ss_pred cCChHHHHHHHccCCC-C------C-eehHHHHHHHHHhCCChHHHHHHHccCC-------CC--ChhHHHHHHHHHHHC
Q 038673 101 CGFLGCSRKVFDEMPE-R------D-VVSWTELIVAYANNGDMESAGGLFNELP-------LK--DKVAWTAMVTGYVQN 163 (548)
Q Consensus 101 ~g~~~~A~~~~~~m~~-~------~-~~~~~~li~~~~~~g~~~~A~~~f~~m~-------~~--~~~~~~~li~~~~~~ 163 (548)
.-++.+++.+-..-.. | + -....+|..++...+.++++++.|+... ++ ....+..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 6666666655433221 1 1 1123346667777778888888877643 22 345788899999999
Q ss_pred CChhHHHHHHHHHHH----CCCCCCHh-----hHHHHHHHHHccCChhHHHHHHHHHH----HcCCCCCChHhHHHHHHH
Q 038673 164 AKPREAIEYFERMQY----AGVETDYV-----TLVGVISACAQLGVIKYANWVCEIAE----GSGFGPINNVVVGSALID 230 (548)
Q Consensus 164 g~~~~A~~l~~~m~~----~g~~p~~~-----t~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~p~~~~~~~~~li~ 230 (548)
.++++|+-+..+... -++..-.. ....+.-++-..|.+..|.+.-++.. ..|-.| ........+.+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra-~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA-LQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH-HHHHHHHHHHH
Confidence 999998877665432 22221111 22234445666777777777666654 456554 45556677889
Q ss_pred HHhcCCCHHHHHHHHhcC
Q 038673 231 MYSKCGSIDDAYRIFVGM 248 (548)
Q Consensus 231 ~y~~~g~~~~A~~~~~~~ 248 (548)
.|-..|+.+.|+.-|+..
T Consensus 255 IyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHhcccHhHHHHHHHHH
Confidence 999999999998877764
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.68 E-value=1.5 Score=25.80 Aligned_cols=32 Identities=13% Similarity=0.274 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPN 287 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 287 (548)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3677788888888888888888888877 4443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=86.67 E-value=15 Score=37.03 Aligned_cols=56 Identities=13% Similarity=0.003 Sum_probs=29.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCC--CchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 350 LLGACQIHRNPEIAQIAANHLFELEPD--KIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 350 ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
|-.++.+.|+.++|.+.++.+.+..|. +......|++.+...+.+.++..++.+-.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 444455555555555555555554443 23345555555555555555555555543
|
The molecular function of this protein is uncertain. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.62 E-value=10 Score=31.36 Aligned_cols=61 Identities=15% Similarity=-0.048 Sum_probs=29.4
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 038673 157 VTGYVQNAKPREAIEYFERMQYAGV--ETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFG 217 (548)
Q Consensus 157 i~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 217 (548)
.....+.|++++|.+.|+.+...=- +-....-..++.++.+.++++.|...++..++..+.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3334455566666666555554310 111223334455555555555555555555555433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.09 E-value=1.4 Score=25.89 Aligned_cols=31 Identities=23% Similarity=0.117 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038673 346 VWGALLGACQIHRNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 346 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 376 (548)
+|..+-..+...|+.+.|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3444555666666666666666666666653
|
... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.92 E-value=4.2 Score=31.19 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 038673 35 DSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIG 96 (548)
Q Consensus 35 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 96 (548)
+..+-++.+....+.|++....+.|+||.+.+++..|.++++-+...- .+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~--~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC--GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cChHHHHHHHHH
Confidence 556666777777888999999999999999999999999999876653 333337776654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.71 E-value=96 Score=37.92 Aligned_cols=305 Identities=12% Similarity=0.010 Sum_probs=169.0
Q ss_pred HHHHHHHHcCChHHHHHHHccC----CCCC-eehHH-HHHHHHHhCCChHHHHHHHcc-CCCCChhHHHHHHHHHHHCCC
Q 038673 93 TMIGMYVKCGFLGCSRKVFDEM----PERD-VVSWT-ELIVAYANNGDMESAGGLFNE-LPLKDKVAWTAMVTGYVQNAK 165 (548)
Q Consensus 93 ~li~~~~~~g~~~~A~~~~~~m----~~~~-~~~~~-~li~~~~~~g~~~~A~~~f~~-m~~~~~~~~~~li~~~~~~g~ 165 (548)
.|..+-.+|+.+..|...++.- .+.+ ...+. .+...|+.-+++|....+... ...++ ...-|.-....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 4555667889999999998883 2211 12233 333477888887777666552 22222 2334455667899
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHH-HHHHHHHhcCCCHHHHHHH
Q 038673 166 PREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVG-SALIDMYSKCGSIDDAYRI 244 (548)
Q Consensus 166 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-~~li~~y~~~g~~~~A~~~ 244 (548)
+..|...|+.+.+.+ ++...+++.++......|.++...-..+-......+ ....+ +.=+.+--+.++++.....
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se---~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSE---EVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCH---HHHHHHHHHHHHHhhhcchhhhhhh
Confidence 999999999998764 334667888887777778777776655544433322 23233 3334444677777777766
Q ss_pred HhcCCCCChhhhHHH-HH-HHHhcC--CHHHHHHHHHHHHHcCCCC---------CHhhHHHHHHHHhhcCC-----ccC
Q 038673 245 FVGMKQRNVFSYSSM-IL-GFAMHG--RAHAAIQLFGDMVKTETKP---------NGVTFIGVLTACSHVGL-----KCY 306 (548)
Q Consensus 245 ~~~~~~~~~~~~~~l-i~-~~~~~g--~~~~A~~l~~~m~~~g~~p---------~~~t~~~ll~a~~~~~~-----~~~ 306 (548)
.. ..+..+|.+. +. ...+.. +.-.-.++.+.+.+.-+.| -...|..++....-... ...
T Consensus 1541 l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~ 1617 (2382)
T KOG0890|consen 1541 LS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELK 1617 (2382)
T ss_pred hh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 65 4556666655 22 222221 1111112233222221111 01223333333222111 111
Q ss_pred CCCcC------HHHHHH---HHHHHHHcCCHHHHHH-HHHhCCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038673 307 GVSPS------TDHYAC---MVDLLGRAGCLEEALK-MVEKMPVEPN-----GGVWGALLGACQIHRNPEIAQIAANHLF 371 (548)
Q Consensus 307 ~~~p~------~~~~~~---li~~~~~~g~~~~A~~-~~~~m~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 371 (548)
+..++ ..-|.. ..+.+.+...+--|.+ .+......|+ ..+|-.....++..|..+.|....-.+.
T Consensus 1618 ~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~ 1697 (2382)
T KOG0890|consen 1618 KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAK 1697 (2382)
T ss_pred ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhh
Confidence 11111 111211 1222222111111111 0111112222 5678888889999999999999888877
Q ss_pred hcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 372 ELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 372 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
+..+ +..+.-.+..+...|+-..|+.+++...+...
T Consensus 1698 e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1698 ESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 7663 34788889999999999999999998876554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=85.59 E-value=21 Score=34.40 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=9.6
Q ss_pred ccccCCCcchhhhhhhh
Q 038673 505 LRICEDCHLFMCGASQV 521 (548)
Q Consensus 505 l~~~~~~~~~~~~~~~~ 521 (548)
-|-|+.|. |++|.|
T Consensus 405 ~rsCP~Cr---klrSs~ 418 (518)
T KOG1941|consen 405 TRSCPNCR---KLRSSM 418 (518)
T ss_pred CCCCccHH---HHHhhc
Confidence 37788887 666643
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.32 E-value=16 Score=30.43 Aligned_cols=91 Identities=11% Similarity=0.081 Sum_probs=45.8
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCC-hhhhHHHHHHHHhcCCHHHHHHH
Q 038673 197 QLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRN-VFSYSSMILGFAMHGRAHAAIQL 275 (548)
Q Consensus 197 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l 275 (548)
..++++++..++..+.-..+. ....-..-.-.+...|++++|.++|+++.+.. ...|..-+.++|-.-..|-....
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~---~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~ 98 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN---LKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHV 98 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC---ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHH
Confidence 356666666666666555433 33333333444566777777777777776543 22444444444433333333322
Q ss_pred H-HHHHHcCCCCCHhh
Q 038673 276 F-GDMVKTETKPNGVT 290 (548)
Q Consensus 276 ~-~~m~~~g~~p~~~t 290 (548)
+ .++.+.|-.|+...
T Consensus 99 ~A~~~le~~~~~~a~~ 114 (153)
T TIGR02561 99 HADEVLARDADADAVA 114 (153)
T ss_pred HHHHHHHhCCCHhHHH
Confidence 2 33344444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.19 E-value=39 Score=32.97 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=55.1
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC----CCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 342 PNGGVWGALLGACQIHRNPEIAQIAANHLFELEP----DKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 342 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
....+|..+...+++.|.++.|...+.++....+ ..+.....-+..+...|+-++|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3467888889999999999999999999888542 1355677778889999999999999888876433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.09 E-value=30 Score=35.82 Aligned_cols=164 Identities=20% Similarity=0.187 Sum_probs=108.2
Q ss_pred CeehHHHHHH-----HHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 038673 118 DVVSWTELIV-----AYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVI 192 (548)
Q Consensus 118 ~~~~~~~li~-----~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 192 (548)
+++.|..++. ...-.|+++.|..++-.+++ ...+.++..+-++|..++|+++- ..||. -|
T Consensus 580 nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rF---- 644 (794)
T KOG0276|consen 580 NVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-------TDPDQ-RF---- 644 (794)
T ss_pred ceEeEeeehHHHHHHHHhhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-------CChhh-hh----
Confidence 5555554443 33456777777776666652 34455666677778777777641 12222 12
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHH
Q 038673 193 SACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAA 272 (548)
Q Consensus 193 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 272 (548)
....+.|+++.|.++..+. .+..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+..
T Consensus 645 elal~lgrl~iA~~la~e~--------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA--------NSEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh--------cchHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHH
Confidence 2234678888888776554 366778899999999999999999988754 366777788888887766
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 273 IQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 273 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
..+-....+.|. .|.-..+|...|+++++.+++.+-.
T Consensus 712 ~~la~~~~~~g~------------------------------~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 712 AVLASLAKKQGK------------------------------NNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHHHHhhcc------------------------------cchHHHHHHHcCCHHHHHHHHHhcC
Confidence 666666665543 2222345666788888888887654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=84.90 E-value=14 Score=35.24 Aligned_cols=48 Identities=13% Similarity=0.157 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH--cC----ChHHHHHHHccCCC
Q 038673 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVK--CG----FLGCSRKVFDEMPE 116 (548)
Q Consensus 68 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~ 116 (548)
++....+++.+.+.| +..+.+++-+..-.... .. ....|..+|+.|++
T Consensus 78 ~~~~~~~y~~L~~~g-Fk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk 131 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAG-FKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKK 131 (297)
T ss_pred HHHHHHHHHHHHHhc-cCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 456788899999998 88888777664444333 11 24456666666654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=84.78 E-value=9 Score=33.37 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=50.3
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--hhhHHHHHHHhhccCCcHHHHHHHHHHHHh
Q 038673 18 FLWTALIRGYILQGHLKDSISLYCSMRREGIGPV--SFTLSALFKACTEVLDVSLGQQIHAQTILL 81 (548)
Q Consensus 18 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~ 81 (548)
..|..+..-|.+.|+.+.|++.|.++.+....|. ...+-.+++.+...+++..+......+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3688888999999999999999999988755553 345677888888888988888877776554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.31 E-value=33 Score=31.31 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHhcCCC-------CChhhhHHHHHHHHhcCCHHHHHHH
Q 038673 223 VVGSALIDMYSKCGSIDDAYRIFVGMKQ-------RNVFSYSSMILGFAMHGRAHAAIQL 275 (548)
Q Consensus 223 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~l 275 (548)
..+.+.|-.|.-..++..|.+.++.-.+ .+..+...|+.+|- .|+.+++-++
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 3455555666666777777777776332 34556667777664 4555554443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=83.46 E-value=47 Score=32.44 Aligned_cols=63 Identities=14% Similarity=0.065 Sum_probs=49.5
Q ss_pred ChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC-------ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 220 NNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR-------NVFSYSSMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 220 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
....++..++..+-+.|.++.|...+..+.+. ++...-.-+...-..|+..+|+..+++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46678889999999999999999999888752 2334444556677789999999999888873
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.44 E-value=28 Score=29.90 Aligned_cols=121 Identities=14% Similarity=0.021 Sum_probs=84.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CC
Q 038673 263 FAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VE 341 (548)
Q Consensus 263 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~ 341 (548)
+++.+..++|+.-|.++.+.|...-.+ -.--.+.......|+-.+|...|.++. ..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~Ypv-----------------------LA~mr~at~~a~kgdta~AV~aFdeia~dt 124 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPV-----------------------LARMRAATLLAQKGDTAAAVAAFDEIAADT 124 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchH-----------------------HHHHHHHHHHhhcccHHHHHHHHHHHhccC
Confidence 467788999999999998865432111 011223455678899999999999985 33
Q ss_pred CChhHHHHHH-----HHHHhcCCHHHHHHHHHHHhh-cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 342 PNGGVWGALL-----GACQIHRNPEIAQIAANHLFE-LEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 342 p~~~~~~~ll-----~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
|.+....-+- -.+..+|.++....-.+-+-. .+|-....-..|+-+-.+.|++.+|.+.|..+..
T Consensus 125 ~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 125 SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred CCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4444432222 235678888887776665544 5555556777888889999999999999998864
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=82.60 E-value=17 Score=34.60 Aligned_cols=123 Identities=14% Similarity=0.163 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc--cC----ChhHHHHHHHHHHHcCCCC-CChHhHHHHHHHHHhcCCCH
Q 038673 166 PREAIEYFERMQYAGVETDYVTLVGVISACAQ--LG----VIKYANWVCEIAEGSGFGP-INNVVVGSALIDMYSKCGSI 238 (548)
Q Consensus 166 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~~p-~~~~~~~~~li~~y~~~g~~ 238 (548)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|.+..+-- ..+...+..|+.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34567788889999988888877664444333 22 3567889999998865431 1233444444433 33443
Q ss_pred ----HHHHHHHhcCCC-----CChhhhHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHhh
Q 038673 239 ----DDAYRIFVGMKQ-----RNVFSYSSMILGFAMHGR---AHAAIQLFGDMVKTETKPNGVT 290 (548)
Q Consensus 239 ----~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~t 290 (548)
+.++.+|+.+.+ .|..-+.+-|-++..... ...+.++++.+.+.|+++....
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~ 219 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMH 219 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccc
Confidence 345555555543 344334443333332221 4578889999999877766544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.34 E-value=46 Score=31.53 Aligned_cols=231 Identities=6% Similarity=-0.105 Sum_probs=139.4
Q ss_pred CChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCh----HHHHHHHccC--CCCCeehHH
Q 038673 50 PVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFL----GCSRKVFDEM--PERDVVSWT 123 (548)
Q Consensus 50 p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m--~~~~~~~~~ 123 (548)
+|.......+.++...|..+....+ ..+.+ .+|..+....+.+++..|+. +++...+..+ .+++...-.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l-~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~ 109 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLA-IELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRA 109 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHH-HHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHH
Confidence 5666666666677666653333322 22322 45667777777777777763 4566666655 346666666
Q ss_pred HHHHHHHhCCCh-----HHHHHHHcc-CCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 038673 124 ELIVAYANNGDM-----ESAGGLFNE-LPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQ 197 (548)
Q Consensus 124 ~li~~~~~~g~~-----~~A~~~f~~-m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 197 (548)
..+.++...+.. ..+.+.+.. +..++..+--..+.++.+.++ ++|+..+-.+.+. +|...-...+.++++
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~ 185 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNS 185 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhc
Confidence 666666555421 223333322 334566666667777777775 5677777777653 444444555556665
Q ss_pred cC-ChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHH
Q 038673 198 LG-VIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLF 276 (548)
Q Consensus 198 ~g-~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 276 (548)
.+ .-..+...+-.+.. . .+..+....+.++++.|+......+.+.+..++ ..-..+.++...|.. +|+..+
T Consensus 186 ~~~~~~~~~~~L~~~L~---D--~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L 257 (280)
T PRK09687 186 NKYDNPDIREAFVAMLQ---D--KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVL 257 (280)
T ss_pred CCCCCHHHHHHHHHHhc---C--CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHH
Confidence 43 23455555555553 2 377788888999999998654444555554444 344677888999986 789988
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHh
Q 038673 277 GDMVKTETKPNGVTFIGVLTACS 299 (548)
Q Consensus 277 ~~m~~~g~~p~~~t~~~ll~a~~ 299 (548)
..+... .||...-...+.+|.
T Consensus 258 ~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 258 DTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHhh--CCChhHHHHHHHHHh
Confidence 888873 456666555555553
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.23 E-value=9 Score=29.49 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=35.6
Q ss_pred hCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 337 KMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 337 ~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
.+-+-|++.+..+.|.+|++.+++..|.++++.+...-.+....|..++
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3346799999999999999999999999999999885554444666655
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.18 E-value=9.1 Score=29.13 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=38.4
Q ss_pred hCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 337 KMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 337 ~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
.+-+-|++.+..+-+.||++.+++..|.++++-+...-.++...|..++
T Consensus 35 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 35 GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 3347799999999999999999999999999988864443444555554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=81.23 E-value=2.1 Score=23.60 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHcCCchHHHHHHH
Q 038673 380 NYIILSNIYASAGMWDDVSRVRR 402 (548)
Q Consensus 380 ~~~~l~~~~~~~g~~~~a~~~~~ 402 (548)
....++.++...|++++|.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56677888888888888887764
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.00 E-value=3.6 Score=23.94 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=19.8
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 255 SYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456667777888888888888888776
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.56 E-value=4.1 Score=25.05 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQY 178 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 178 (548)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677777778888888888887777643
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=80.17 E-value=25 Score=27.06 Aligned_cols=85 Identities=13% Similarity=0.059 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 038673 201 IKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMV 280 (548)
Q Consensus 201 ~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 280 (548)
.++|..+-+.+...+-. ...+--.-+..+.+.|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+.+|.
T Consensus 21 HqEA~tIAdwL~~~~~~---~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 21 HQEANTIADWLHLKGES---EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHhcCCch---HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 46666666666555422 33333334566778999999999999999999999988765 46677777777777777
Q ss_pred HcCCCCCHhhH
Q 038673 281 KTETKPNGVTF 291 (548)
Q Consensus 281 ~~g~~p~~~t~ 291 (548)
.+| .|...+|
T Consensus 96 ~sg-~p~lq~F 105 (115)
T TIGR02508 96 ASG-DPRLQTF 105 (115)
T ss_pred hCC-CHHHHHH
Confidence 764 3444444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.0 bits (115), Expect = 4e-06
Identities = 15/121 (12%), Positives = 37/121 (30%), Gaps = 32/121 (26%)
Query: 227 ALIDMYSKCGSIDDAYRIFVGMKQR-------NVFSYSSMILGFAMHGRAHAAIQLFGDM 279
A + A+ + V + + Y++++LG+A G + + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 280 VKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEAL-KMVEKM 338
P+ ++ YA + +GR + + +E+M
Sbjct: 192 KDAGLTPDLLS------------------------YAAALQCMGRQDQDAGTIERCLEQM 227
Query: 339 P 339
Sbjct: 228 S 228
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 43.3 bits (100), Expect = 2e-04
Identities = 9/91 (9%), Positives = 24/91 (26%), Gaps = 7/91 (7%)
Query: 116 ERDVVSWTELIVAYANNGDMESAGGLFNEL-------PLKDKVAWTAMVTGYVQNAKPRE 168
+ A L L + A++ G+ + +E
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 169 AIEYFERMQYAGVETDYVTLVGVISACAQLG 199
+ ++ AG+ D ++ + +
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 3e-05
Identities = 78/576 (13%), Positives = 152/576 (26%), Gaps = 202/576 (35%)
Query: 66 LDVSLGQ-QIHAQTIL---LGGFTSDL---YVGNTMIGMYVKCGFLGCSRKVFDE-MPER 117
+D G+ Q + IL F + V + + S++ D + +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL--------SKEEIDHIIMSK 58
Query: 118 DVVSWTE-LIVAYANNGDMESAGGLFNELPLKDKVAW--TAMVTGYVQNAKPREA-IEYF 173
D VS T L + E F E L+ + + + T Q + IE
Sbjct: 59 DAVSGTLRLFWTLLSKQ--EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 174 ERMQYAGVE-------------------------TDYVTLVG---------VISACAQLG 199
+R+ Y + V + G + C
Sbjct: 117 DRL-YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 200 VIKYAN----WV----CEIAEGSGFGPINNVVV-----GSALIDMYS----KCGSIDDAY 242
V + W+ C E + + ++ ++ D S + SI
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPE-TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 243 RIFVGMKQ--------RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGV 294
R + K NV + + F + + ++ T T+ VT
Sbjct: 235 RRLLKSKPYENCLLVLLNVQN-AKAWNAFNLSCK----------ILLT-TRFKQVTDFLS 282
Query: 295 LTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGAC 354
+H+ L + ++ + D + LL L+ + +P E
Sbjct: 283 AATTTHISLDHHSMTLTPDE---VKSLL--LKYLDCR---PQDLPRE-----------VL 323
Query: 355 QIHRNP-EIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDV--SRVRRLLKMTGLKK 411
+ P ++ IA N W V ++ +++ +
Sbjct: 324 TTN--PRRLSIIAE--SIRDGLATWDN-------------WKHVNCDKLTTIIESS---- 362
Query: 412 NPGYSWLEGDRGVIHEFRA--GDLT-HPNSTEI-QQALGDLLDRLQADGYQPNLRSVLYD 467
+ LE E+R L+ P S I L S+++
Sbjct: 363 ---LNVLEPA-----EYRKMFDRLSVFPPSAHIPTILL-----------------SLIWF 397
Query: 468 VSDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIV 527
+ +++ K +L +T+ I +L V
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEK---QPKESTISIP-------SIYL----------ELKV 437
Query: 528 VRDNMRFHH------FQDGKCSCG---------NYW 548
+N H + K Y+
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 548 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.71 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.71 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.7 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.65 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.6 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.59 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.57 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.57 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.53 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.52 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.52 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.51 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.51 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.51 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.51 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.5 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.5 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.49 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.46 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.46 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.45 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.45 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.45 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.45 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.43 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.41 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.4 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.39 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.37 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.37 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.35 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.35 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.34 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.34 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.31 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.31 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.3 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.28 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.27 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.27 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.24 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.23 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.19 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.16 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.15 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.13 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.12 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.12 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.09 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.05 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.04 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.02 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.0 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.0 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.98 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.97 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.96 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.92 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.88 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.87 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.87 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.85 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.84 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.82 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.8 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.78 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.77 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.76 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.75 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.73 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.7 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.7 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.69 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.67 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.65 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.65 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.61 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.61 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.6 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.59 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.57 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.56 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.56 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.55 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.54 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.53 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.52 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.52 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.5 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.47 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.46 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.45 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.44 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.42 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.42 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.42 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.39 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.38 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.37 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.37 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.37 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.35 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.34 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.33 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.33 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.32 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.31 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.29 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.28 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.28 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.27 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.26 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.26 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.25 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.25 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.25 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.25 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.23 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.23 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.22 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.2 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.18 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.18 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.18 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.17 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.16 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.15 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.14 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.12 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.1 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.1 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.08 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.07 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.06 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.04 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.03 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.01 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.01 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.0 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.98 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.96 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.92 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.91 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.91 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.9 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.9 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.9 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.88 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.83 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.82 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.81 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.8 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.76 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.74 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.73 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.72 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.7 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.68 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.66 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.65 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.62 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.61 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.6 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.48 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.38 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.32 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.32 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.28 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.27 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.24 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.22 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.09 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.07 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.97 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.92 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.91 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.88 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.88 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.88 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.86 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.74 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.72 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.64 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.44 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.4 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.26 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.22 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.18 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.91 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.51 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.33 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.33 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.25 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.87 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.63 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.21 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.68 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.21 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.1 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.87 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 92.72 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.26 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.12 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 91.55 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.23 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 90.14 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 90.06 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 89.9 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.42 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 89.37 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.8 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.66 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.48 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 87.61 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.5 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.81 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 84.78 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 82.83 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 82.76 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.01 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.57 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.64 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 80.43 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 80.02 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-36 Score=316.90 Aligned_cols=395 Identities=10% Similarity=-0.028 Sum_probs=339.3
Q ss_pred cchHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhC
Q 038673 3 SFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLG 82 (548)
Q Consensus 3 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 82 (548)
..++..|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|...|++++|..+++.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 145 (597)
T 2xpi_A 70 LKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL-- 145 (597)
T ss_dssp ------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--
T ss_pred CCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--
Confidence 4567888999989999999999999999999999999999985 568889999999999999999999999998765
Q ss_pred CCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCC-------------------CeehHHHHHHHHHhCCChHHHHHHHc
Q 038673 83 GFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPER-------------------DVVSWTELIVAYANNGDMESAGGLFN 143 (548)
Q Consensus 83 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~f~ 143 (548)
.+++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++|.++|+
T Consensus 146 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 224 (597)
T 2xpi_A 146 -YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYK 224 (597)
T ss_dssp -GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4688999999999999999999999999965433 47899999999999999999988876
Q ss_pred cCC------------------------------------------------------------------------C--CC
Q 038673 144 ELP------------------------------------------------------------------------L--KD 149 (548)
Q Consensus 144 ~m~------------------------------------------------------------------------~--~~ 149 (548)
+|. . ++
T Consensus 225 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 304 (597)
T 2xpi_A 225 EALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKS 304 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGC
T ss_pred HHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCch
Confidence 652 1 46
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..++..++.++...|++++|.++++.+.+... .+..+++.++
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~ 380 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP---EKAVTWLAVG 380 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc---ccHHHHHHHH
Confidence 6788889999999999999999999998765 44677889999999999999999999999987654 3889999999
Q ss_pred HHHhcCCCHHHHHHHHhcCC---CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC---
Q 038673 230 DMYSKCGSIDDAYRIFVGMK---QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL--- 303 (548)
Q Consensus 230 ~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~--- 303 (548)
.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+. .+++..++..+..+|.+.|.
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL-FQGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TTTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999876 356789999999999999999999999999985 34477899999999999987
Q ss_pred ------ccC-CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--hhHHHHHHHHHHhcCCHHHHHHHH
Q 038673 304 ------KCY-GVSPSTDHYACMVDLLGRAGCLEEALKMVEKM-------PVEPN--GGVWGALLGACQIHRNPEIAQIAA 367 (548)
Q Consensus 304 ------~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~ 367 (548)
... ..+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..+..+|.+.|++++|...+
T Consensus 460 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 460 ANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 111 12346889999999999999999999999988 34677 789999999999999999999999
Q ss_pred HHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 368 NHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 368 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
+++.+..|+++.+|..++.+|.+.|++++|.++++++.+.
T Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=295.62 Aligned_cols=381 Identities=7% Similarity=-0.024 Sum_probs=332.6
Q ss_pred CcchHHHhccC--CCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH-C--------------CCCCChhhHHHHHHHhhc
Q 038673 2 DSFPRLVFEQV--KYKNPFLWTALIRGYILQGHLKDSISLYCSMRR-E--------------GIGPVSFTLSALFKACTE 64 (548)
Q Consensus 2 ~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~--------------g~~p~~~~~~~ll~a~~~ 64 (548)
+++|..+|+.+ .++++.+|+.++.+|.+.|++++|+++|+++.. . |.+++..+|+.++.++.+
T Consensus 133 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (597)
T 2xpi_A 133 YARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTN 212 (597)
T ss_dssp HHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 56788999988 467889999999999999999999999985322 1 223457899999999999
Q ss_pred cCCcHHHHHHHHHHHHhCCCCCChhHHHHH--------------------------------------HHHHHHcCChHH
Q 038673 65 VLDVSLGQQIHAQTILLGGFTSDLYVGNTM--------------------------------------IGMYVKCGFLGC 106 (548)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------------------------------i~~~~~~g~~~~ 106 (548)
.|++++|.++|+.+++.+ +.+...+..+ +.+|.+.|++++
T Consensus 213 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 290 (597)
T 2xpi_A 213 LSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHH
Confidence 999999999999999876 4444443333 556778899999
Q ss_pred HHHHHccCCC--CCeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC
Q 038673 107 SRKVFDEMPE--RDVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGV 181 (548)
Q Consensus 107 A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 181 (548)
|.++|+++.+ ++..+|+.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|..+|+++.+..
T Consensus 291 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 369 (597)
T 2xpi_A 291 AEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH- 369 (597)
T ss_dssp HHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-
Confidence 9999999988 789999999999999999999999999985 4478899999999999999999999999998653
Q ss_pred CCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC---CCChhhhHH
Q 038673 182 ETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK---QRNVFSYSS 258 (548)
Q Consensus 182 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~ 258 (548)
+.+..++..++..|.+.|++++|.++|+.+.+.... +..+|+.++.+|.+.|++++|.++|+++. ..+..+|+.
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 446 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ---FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLF 446 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 557889999999999999999999999999987644 88899999999999999999999999876 357889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC---------------ccCCCCcC--HHHHHHHHHH
Q 038673 259 MILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL---------------KCYGVSPS--TDHYACMVDL 321 (548)
Q Consensus 259 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------------~~~~~~p~--~~~~~~li~~ 321 (548)
++.+|.+.|++++|+++|++|.+. .+.+..+|..+...+.+.|. .+.+..|+ ..+|..++.+
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYAL-FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 999999999999999999999985 34468899999999999996 22366787 7899999999
Q ss_pred HHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 038673 322 LGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389 (548)
Q Consensus 322 ~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 389 (548)
|.+.|++++|.++++++. ..| +..+|..+..+|...|++++|...++++++++|+++..+..|+++|.
T Consensus 526 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 526 YRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999874 345 68999999999999999999999999999999999999999988774
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-26 Score=228.24 Aligned_cols=351 Identities=13% Similarity=0.053 Sum_probs=305.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc
Q 038673 23 LIRGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKC 101 (548)
Q Consensus 23 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 101 (548)
+...+.+.|++++|++.|..+.+. .| +...+..+...+...|+++.|...++..++.. +.+..++..+...|.+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHC
Confidence 345677889999999999998875 45 44566667777888999999999999999875 77889999999999999
Q ss_pred CChHHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHH
Q 038673 102 GFLGCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFER 175 (548)
Q Consensus 102 g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 175 (548)
|++++|...|+++.+ | +..+|..+..++.+.|++++|.+.|+++. +.+...+..+...+...|++++|...|++
T Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998864 4 45579999999999999999999998875 33566788888999999999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CC
Q 038673 176 MQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RN 252 (548)
Q Consensus 176 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~ 252 (548)
+.+.. +.+..++..+...+...|++++|...++.+.+..+. +...+..+...|...|++++|...|++..+ .+
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 236 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN---FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC
Confidence 98763 345778899999999999999999999999987754 888999999999999999999999987753 45
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 038673 253 VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEAL 332 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 332 (548)
..+|..+...|...|++++|++.|+++.+ ..|+ +..+|..+...|.+.|++++|.
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~-----------------------~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPH-----------------------FPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSS-----------------------CHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC-----------------------CHHHHHHHHHHHHHcCCHHHHH
Confidence 78899999999999999999999999988 3444 3456888999999999999999
Q ss_pred HHHHhCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 333 KMVEKMP--VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 333 ~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
+.|+++. ..++..+|..+...+...|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 292 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999884 3346889999999999999999999999999999999999999999999999999999999999875
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-26 Score=227.35 Aligned_cols=361 Identities=14% Similarity=0.069 Sum_probs=314.1
Q ss_pred CCcchHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHH
Q 038673 1 MDSFPRLVFEQVK---YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQ 77 (548)
Q Consensus 1 ~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~ 77 (548)
++++|.+.|+.+. +.+...+..+...+.+.|++++|...++..... .+.+..+|..+..++...|++++|...++.
T Consensus 14 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 92 (388)
T 1w3b_A 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3567888876653 335567778888899999999999999998874 345778999999999999999999999999
Q ss_pred HHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CC-eehHHHHHHHHHhCCChHHHHHHHccCC---CCChh
Q 038673 78 TILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--RD-VVSWTELIVAYANNGDMESAGGLFNELP---LKDKV 151 (548)
Q Consensus 78 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~ 151 (548)
+++.. +.+..++..+..+|.+.|++++|.+.|+++.+ |+ ...+..+...+...|++++|.+.|+++. +.+..
T Consensus 93 al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 170 (388)
T 1w3b_A 93 ALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170 (388)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 99975 66778899999999999999999999998864 54 4567788889999999999999999875 34678
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDM 231 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~ 231 (548)
+|+.+...|.+.|++++|+..|+++.+.+ +.+...+..+...+...|++++|...+..+.+..+. +..++..+...
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~ 246 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN---HAVVHGNLACV 246 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC---CHHHHHHHHHH
Confidence 99999999999999999999999998864 345677888999999999999999999999887644 88999999999
Q ss_pred HhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCC
Q 038673 232 YSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGV 308 (548)
Q Consensus 232 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 308 (548)
|.+.|++++|.+.|+++.+ .+..+|..+...+...|++++|++.|+++.+. .|+
T Consensus 247 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~--------------------- 303 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPT--------------------- 303 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTT---------------------
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccc---------------------
Confidence 9999999999999998763 35678999999999999999999999999884 333
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 038673 309 SPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSN 386 (548)
Q Consensus 309 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 386 (548)
+..++..+...+.+.|++++|.+.++++. ..|+ ..++..+..++...|++++|...+++++++.|+++..|..++.
T Consensus 304 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~ 381 (388)
T 1w3b_A 304 --HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381 (388)
T ss_dssp --CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHH
Confidence 45678889999999999999999999885 4565 7789999999999999999999999999999999999999999
Q ss_pred HHHHcCC
Q 038673 387 IYASAGM 393 (548)
Q Consensus 387 ~~~~~g~ 393 (548)
++...|+
T Consensus 382 ~~~~~~~ 388 (388)
T 1w3b_A 382 TLKEMQD 388 (388)
T ss_dssp HHHHTCC
T ss_pred HHHHccC
Confidence 8887663
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=247.75 Aligned_cols=213 Identities=13% Similarity=0.048 Sum_probs=162.8
Q ss_pred hHHHHHHHHHHHCCCCCCh-hhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHc
Q 038673 34 KDSISLYCSMRREGIGPVS-FTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFD 112 (548)
Q Consensus 34 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 112 (548)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|+.|.+.| +.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~~----- 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATES----- 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSSS-----
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhhh-----
Confidence 4456677788877776544 458888999999999999999999999998 999999999999988876653211
Q ss_pred cCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 038673 113 EMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVI 192 (548)
Q Consensus 113 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 192 (548)
.+.+..++|.++|++|...|+.||..||+++|
T Consensus 81 ------------------------------------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 81 ------------------------------------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp ------------------------------------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred ------------------------------------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 12234567788888888888888888888888
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC----CCChhhhHHHHHHHHhcCC
Q 038673 193 SACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK----QRNVFSYSSMILGFAMHGR 268 (548)
Q Consensus 193 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~ 268 (548)
.+|++.|++++|.+++++|.+.|+.| +..+|++||.+|++.|++++|.++|++|. .||..+|++||.+|++.|+
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~P--d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~ 190 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQP--RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN 190 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC--ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC
Confidence 88888888888888888888888885 88888888888888888888888888886 4788899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcC
Q 038673 269 AHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302 (548)
Q Consensus 269 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 302 (548)
.++|.++|++|.+.|+.|+..||+.++..++..+
T Consensus 191 ~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 191 ADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999988887643
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=243.01 Aligned_cols=202 Identities=12% Similarity=0.052 Sum_probs=166.5
Q ss_pred chHHHhccCCCC-----CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCC---------cH
Q 038673 4 FPRLVFEQVKYK-----NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD---------VS 69 (548)
Q Consensus 4 ~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~---------~~ 69 (548)
.+..++..+.++ +...++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|+..+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 345556655533 2246899999999999999999999999999999999999999999987654 57
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCC
Q 038673 70 LGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKD 149 (548)
Q Consensus 70 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~ 149 (548)
.|.++|+.|.+.| +.||..+||+||.+|++.|++++|.++|++|.+. -..||
T Consensus 88 ~A~~lf~~M~~~G-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~---------------------------g~~Pd 139 (501)
T 4g26_A 88 RGFDIFKQMIVDK-VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF---------------------------GIQPR 139 (501)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---------------------------TCCCC
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------------------------CCCCc
Confidence 8999999999999 9999999999999999999999999998877431 13578
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.+++++|.+.+..| +..||+.++
T Consensus 140 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p--s~~T~~~l~ 217 (501)
T 4g26_A 140 LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV--SKSTFDMIE 217 (501)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB--CHHHHHHHH
T ss_pred cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc--CHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888885 888888888
Q ss_pred HHHhcC
Q 038673 230 DMYSKC 235 (548)
Q Consensus 230 ~~y~~~ 235 (548)
..|+..
T Consensus 218 ~~F~s~ 223 (501)
T 4g26_A 218 EWFKSE 223 (501)
T ss_dssp HHHHSH
T ss_pred HHHhcC
Confidence 888753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-23 Score=213.32 Aligned_cols=357 Identities=11% Similarity=-0.049 Sum_probs=292.7
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 038673 17 PFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIG 96 (548)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 96 (548)
...|......+.+.|++++|+..|+++.... ||..+|..+..++...|+++.|...++.+++.. +.+..++..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHH
Confidence 3456777788889999999999999998854 788889999999999999999999999998876 677888999999
Q ss_pred HHHHcCChHHHHHHHccCCC--C-C-------------------------------------------------------
Q 038673 97 MYVKCGFLGCSRKVFDEMPE--R-D------------------------------------------------------- 118 (548)
Q Consensus 97 ~~~~~g~~~~A~~~~~~m~~--~-~------------------------------------------------------- 118 (548)
+|.+.|++++|...|+++.+ | +
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 99999999999988877632 1 1
Q ss_pred ------------------------eehHHHHHHHHHh---CCChHHHHHHHccCCC----------------C-ChhHHH
Q 038673 119 ------------------------VVSWTELIVAYAN---NGDMESAGGLFNELPL----------------K-DKVAWT 154 (548)
Q Consensus 119 ------------------------~~~~~~li~~~~~---~g~~~~A~~~f~~m~~----------------~-~~~~~~ 154 (548)
...+......+.. .|++++|...|+++.. + +..+|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1122222233333 7899999998877644 1 355788
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc
Q 038673 155 AMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK 234 (548)
Q Consensus 155 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~ 234 (548)
.+...+...|++++|+..|+++.... |+...+..+...+...|++++|...++.+.+.... +..++..+...|..
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN---NSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT---CTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC---CHHHHHHHHHHHHH
Confidence 88889999999999999999988764 34777888888899999999999999998887644 77788899999999
Q ss_pred CCCHHHHHHHHhcCC---CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcC
Q 038673 235 CGSIDDAYRIFVGMK---QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPS 311 (548)
Q Consensus 235 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~ 311 (548)
.|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+. .|+ +
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------------------~ 371 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPE-----------------------A 371 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STT-----------------------C
T ss_pred hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--ccc-----------------------C
Confidence 999999999998765 345678888888999999999999999998873 333 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCC----hhHHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCCchh
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMP----VEPN----GGVWGALLGACQI---HRNPEIAQIAANHLFELEPDKIGN 380 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~ 380 (548)
...+..+...|.+.|++++|.+.++++. ..|+ ...|..+...+.. .|+++.|...++++++..|+++.+
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 451 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA 451 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHH
Confidence 4568888999999999999999998873 2222 3388888899999 999999999999999999999999
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 381 YIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 381 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
+..++.+|.+.|++++|.+.+++..+.
T Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 452 KIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999999998764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9e-23 Score=207.78 Aligned_cols=325 Identities=12% Similarity=0.013 Sum_probs=251.0
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 038673 16 NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMI 95 (548)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 95 (548)
++..|..+...+.+.|++++|+.+|+++.+. .+.+..++..+..++...|++++|...++.+++.+ +.+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHH
Confidence 4567888899999999999999999998875 23467788888888999999999999999999886 66788888999
Q ss_pred HHHHHcCChHHHHHHHccCCCCC---e---ehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHH
Q 038673 96 GMYVKCGFLGCSRKVFDEMPERD---V---VSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREA 169 (548)
Q Consensus 96 ~~~~~~g~~~~A~~~~~~m~~~~---~---~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 169 (548)
.+|.+.|++++|.+.|+++.+.+ . .+|..++..+.. ..+..+...+.+.|++++|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------QRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHcCCHHHH
Confidence 99999999999999988876522 2 455555444221 1223344456677777788
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 170 IEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 170 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
+..|+++.... +.+...+..+..++...|++++|...++.+.+.... +..++..+...|.+.|++++|...|+++.
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND---NTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 87777776643 345666777777777778888888887777766533 67777778888888888888888877765
Q ss_pred C--C-ChhhhHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHH
Q 038673 250 Q--R-NVFSYSSM------------ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDH 314 (548)
Q Consensus 250 ~--~-~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~ 314 (548)
+ | +...+..+ ...+...|++++|+..|+++.+ +.|+...+ ...+
T Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~-------------------~~~~ 297 (450)
T 2y4t_A 239 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEY-------------------TVRS 297 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHH-------------------HHHH
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHH-------------------HHHH
Confidence 2 2 33344444 7889999999999999999988 44553221 1246
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNI 387 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 387 (548)
|..+..++.+.|++++|.+.++++. ..| +...|..+..+|...|++++|...+++++++.|+++..+..+..+
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 8889999999999999999999874 445 588999999999999999999999999999999999999888843
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-21 Score=198.00 Aligned_cols=305 Identities=11% Similarity=0.062 Sum_probs=229.7
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHH
Q 038673 85 TSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---RDVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVT 158 (548)
Q Consensus 85 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~ 158 (548)
+.+...+..+...|.+.|++++|...|+++.+ .+..+|..+..+|...|++++|...|+++. +.+..+|..+..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 33444555555555555555555555555432 234455555555555555555555555543 335667777888
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCH----hhHHHH------------HHHHHccCChhHHHHHHHHHHHcCCCCCChH
Q 038673 159 GYVQNAKPREAIEYFERMQYAGVETDY----VTLVGV------------ISACAQLGVIKYANWVCEIAEGSGFGPINNV 222 (548)
Q Consensus 159 ~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 222 (548)
.|.+.|++++|...|+++... .|+. ..+..+ ...+...|++++|...++.+.+.... +.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~ 177 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW---DA 177 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---Ch
Confidence 888888888888888887764 3433 334333 44478899999999999999987654 88
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 038673 223 VVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACS 299 (548)
Q Consensus 223 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 299 (548)
.++..++.+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++.. ..|+.......+....
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHH
Confidence 9999999999999999999999998863 5788999999999999999999999999987 4666554433332111
Q ss_pred hcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038673 300 HVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-----GGVWGALLGACQIHRNPEIAQIAANHLFEL 373 (548)
Q Consensus 300 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 373 (548)
....+..+...+.+.|++++|.+.|+++. ..|+ ...|..+..++...|++++|...++++++.
T Consensus 256 -----------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 256 -----------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp -----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 11233445888999999999999999884 4455 346777889999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 374 EPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 374 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
.|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 325 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-20 Score=194.00 Aligned_cols=359 Identities=10% Similarity=-0.006 Sum_probs=288.2
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 038673 17 PFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIG 96 (548)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 96 (548)
...|..+...+.+.|++++|++.|+++.... +.+..++..+..++...|++++|.+.++.+++.. +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHH
Confidence 3568888999999999999999999999853 3477889999999999999999999999999986 778899999999
Q ss_pred HHHHcCChHHHHHHHccCCC-CCee-------------------------------------------------------
Q 038673 97 MYVKCGFLGCSRKVFDEMPE-RDVV------------------------------------------------------- 120 (548)
Q Consensus 97 ~~~~~g~~~~A~~~~~~m~~-~~~~------------------------------------------------------- 120 (548)
+|...|++++|...|+.+.. |+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999998864421 2110
Q ss_pred --------------hHHHHHHHHHh--------CCChHHHHHHHccCCCC---C-------hhHHHHHHHHHHHCCChhH
Q 038673 121 --------------SWTELIVAYAN--------NGDMESAGGLFNELPLK---D-------KVAWTAMVTGYVQNAKPRE 168 (548)
Q Consensus 121 --------------~~~~li~~~~~--------~g~~~~A~~~f~~m~~~---~-------~~~~~~li~~~~~~g~~~~ 168 (548)
.+..+...+.. .|++++|..+|+++... + ..+|..+...+...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 11111111111 14788888888877532 2 2357777788889999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcC
Q 038673 169 AIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGM 248 (548)
Q Consensus 169 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 248 (548)
|+..|++.... .|+...+..+...+...|++++|...+..+.+.... +..++..+...|...|++++|...|+++
T Consensus 262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE---YPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999875 466778888888899999999999999999887754 7888999999999999999999999987
Q ss_pred CC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHc
Q 038673 249 KQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRA 325 (548)
Q Consensus 249 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~ 325 (548)
.+ .+...|..+...|...|++++|+..|+++.+. .|+ +...+..+...+...
T Consensus 337 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~-----------------------~~~~~~~l~~~~~~~ 391 (537)
T 3fp2_A 337 QSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPT-----------------------LPEVPTFFAEILTDR 391 (537)
T ss_dssp HHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------CTHHHHHHHHHHHHT
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------------------ChHHHHHHHHHHHHh
Confidence 63 45678889999999999999999999999874 343 345688889999999
Q ss_pred CCHHHHHHHHHhCC-C---CC----ChhHHHHHHHHHHhc----------CCHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 038673 326 GCLEEALKMVEKMP-V---EP----NGGVWGALLGACQIH----------RNPEIAQIAANHLFELEPDKIGNYIILSNI 387 (548)
Q Consensus 326 g~~~~A~~~~~~m~-~---~p----~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 387 (548)
|++++|.+.++++. . .+ ....+..+...+... |++++|...++++++..|+++..+..++.+
T Consensus 392 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 471 (537)
T 3fp2_A 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL 471 (537)
T ss_dssp TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999998862 1 11 122233444566777 999999999999999999999999999999
Q ss_pred HHHcCCchHHHHHHHHHHhCC
Q 038673 388 YASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 388 ~~~~g~~~~a~~~~~~m~~~g 408 (548)
|.+.|++++|.+.+++..+..
T Consensus 472 ~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 472 KLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhccHHHHHHHHHHHHHhC
Confidence 999999999999999987643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=195.35 Aligned_cols=357 Identities=11% Similarity=-0.016 Sum_probs=293.3
Q ss_pred CcchHHHhccCC--CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHH
Q 038673 2 DSFPRLVFEQVK--YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTI 79 (548)
Q Consensus 2 ~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 79 (548)
+++|.+.|+++. .||...|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++|...++.++
T Consensus 22 ~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 100 (514)
T 2gw1_A 22 YDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLS 100 (514)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567888888765 3788999999999999999999999999999853 3356789999999999999999999999998
Q ss_pred HhCCCCCC------------------------------------------------------------------------
Q 038673 80 LLGGFTSD------------------------------------------------------------------------ 87 (548)
Q Consensus 80 ~~~~~~~~------------------------------------------------------------------------ 87 (548)
+.+ +++
T Consensus 101 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (514)
T 2gw1_A 101 LNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178 (514)
T ss_dssp HSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCS
T ss_pred hcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHH
Confidence 765 222
Q ss_pred -------hhHHHHHHHHHHH---cCChHHHHHHHccCCC----------------C-CeehHHHHHHHHHhCCChHHHHH
Q 038673 88 -------LYVGNTMIGMYVK---CGFLGCSRKVFDEMPE----------------R-DVVSWTELIVAYANNGDMESAGG 140 (548)
Q Consensus 88 -------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~----------------~-~~~~~~~li~~~~~~g~~~~A~~ 140 (548)
...+..+...+.. .|++++|...|+++.+ | +..+|..+...+...|++++|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 258 (514)
T 2gw1_A 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHE 258 (514)
T ss_dssp SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 2222333333333 7999999999987654 1 34578888999999999999999
Q ss_pred HHccCC--CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 038673 141 LFNELP--LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGP 218 (548)
Q Consensus 141 ~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p 218 (548)
.|+++. .|+...|..+...|...|++++|+..|+++.... +.+...+..+...+...|++++|...++.+.+....
T Consensus 259 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 336 (514)
T 2gw1_A 259 DIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE- 336 (514)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-
T ss_pred HHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-
Confidence 998874 3347889999999999999999999999998764 445667888999999999999999999999987654
Q ss_pred CChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038673 219 INNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVL 295 (548)
Q Consensus 219 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 295 (548)
+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+. .|+..
T Consensus 337 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~------ 406 (514)
T 2gw1_A 337 --NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL--ENKLD------ 406 (514)
T ss_dssp --CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTSS------
T ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hhccc------
Confidence 778999999999999999999999998763 46778999999999999999999999999873 22210
Q ss_pred HHHhhcCCccCCCCcCHHHHHHHHHHHHH---cCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038673 296 TACSHVGLKCYGVSPSTDHYACMVDLLGR---AGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHL 370 (548)
Q Consensus 296 ~a~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 370 (548)
...-....+..+...+.. .|++++|.+.+++.. ..| +..+|..+...+...|+++.|...++++
T Consensus 407 -----------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 407 -----------GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp -----------SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 000013468888999999 999999999999874 344 4778888889999999999999999999
Q ss_pred hhcCCCCchhHHHH
Q 038673 371 FELEPDKIGNYIIL 384 (548)
Q Consensus 371 ~~~~p~~~~~~~~l 384 (548)
+++.|+++..+..+
T Consensus 476 ~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 476 ADLARTMEEKLQAI 489 (514)
T ss_dssp HHHCSSHHHHHHHH
T ss_pred HHhccccHHHHHHH
Confidence 99999988666655
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-18 Score=166.80 Aligned_cols=328 Identities=12% Similarity=0.017 Sum_probs=245.1
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 038673 16 NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMI 95 (548)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 95 (548)
|+..|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+++.. +.+..++..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHH
Confidence 35578888899999999999999999998852 3357788888899999999999999999999885 66788899999
Q ss_pred HHHHHcCChHHHHHHHccCCCCCe------ehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHH
Q 038673 96 GMYVKCGFLGCSRKVFDEMPERDV------VSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREA 169 (548)
Q Consensus 96 ~~~~~~g~~~~A~~~~~~m~~~~~------~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 169 (548)
.+|...|++++|...|++..+.+. ..+..+...+. ...+..+...+...|++++|
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------------------MQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------------------HHHHHHHHHHHHHccCHHHH
Confidence 999999999999999988765322 22222211100 11233445667777777777
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 170 IEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 170 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
+..|+++.+.. +.+...+..+...+...|++++|...++.+.+..+. +..++..+...|...|++++|...|++..
T Consensus 140 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 140 ITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD---NTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777776653 345566677777777777777777777777766533 66777777777777888888877777665
Q ss_pred C--C-ChhhhH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHH
Q 038673 250 Q--R-NVFSYS------------SMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDH 314 (548)
Q Consensus 250 ~--~-~~~~~~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~ 314 (548)
+ | +...|. .+...+...|++++|+..++++.+. .|+...+ ....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~-------------------~~~~ 274 (359)
T 3ieg_A 216 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEY-------------------TVRS 274 (359)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHH-------------------HHHH
T ss_pred hhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHH-------------------HHHH
Confidence 3 2 222222 2356688999999999999999884 3443221 1133
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYAS 390 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 390 (548)
+..+...+...|++++|.+.+++.. ..| +..+|..+...+...|++++|...++++++++|+++..+..+..++..
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 5667888999999999999998874 345 578888888999999999999999999999999998887777766543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=7.6e-19 Score=171.45 Aligned_cols=342 Identities=13% Similarity=0.103 Sum_probs=168.9
Q ss_pred CcchHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHh
Q 038673 2 DSFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILL 81 (548)
Q Consensus 2 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~ 81 (548)
+++|.+.|++++.|+ +|+.|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++..++.
T Consensus 19 ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 19 LDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 689999999997775 8999999999999999999999653 67889999999999999999999988887774
Q ss_pred CCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHH
Q 038673 82 GGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYV 161 (548)
Q Consensus 82 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 161 (548)
.+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..++.++.
T Consensus 91 ---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~ 159 (449)
T 1b89_A 91 ---ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLV 159 (449)
T ss_dssp ---------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHHHHH
T ss_pred ---CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHH
Confidence 45688999999999999999999988864 78889999999999999999999999987 48999999999
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHH
Q 038673 162 QNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDA 241 (548)
Q Consensus 162 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A 241 (548)
+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +. ..+.-...++..|.+.|.+++|
T Consensus 160 ~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~--~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 160 HLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IV--VHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp TTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TT--TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HH--hCHhhHHHHHHHHHHCCCHHHH
Confidence 999999999999988 2788999999999999999999654443 22 2344455799999999999999
Q ss_pred HHHHhcCCC---CChhhhHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHH
Q 038673 242 YRIFVGMKQ---RNVFSYSSMILGFAMH--GRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYA 316 (548)
Q Consensus 242 ~~~~~~~~~---~~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~ 316 (548)
..+++.... .....|+-|.-+|++. ++..+.+++|.. .....-+|++|.. ...|.
T Consensus 227 i~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---------~ini~k~~~~~~~-----------~~~w~ 286 (449)
T 1b89_A 227 ITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS---------RVNIPKVLRAAEQ-----------AHLWA 286 (449)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---------TSCHHHHHHHHHT-----------TTCHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------HhcCcHHHHHHHH-----------HHHHH
Confidence 999998764 3456788888788776 344455554431 2334456777764 34699
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchH
Q 038673 317 CMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDD 396 (548)
Q Consensus 317 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 396 (548)
-++..|...++++.|....-+-+ |+..--..+.....+-.+.|.--++..-.++..|. ..+.|..++...=+...
T Consensus 287 e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~---~l~~ll~~l~~~ld~~r 361 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL---LLNDLLMVLSPRLDHTR 361 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGG---GHHHHHHHHGGGCCHHH
T ss_pred HHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHH---HHHHHHHHHHhccCcHH
Confidence 99999999999999988765543 34333344445555666666665555555554444 34444444433333333
Q ss_pred HHHH
Q 038673 397 VSRV 400 (548)
Q Consensus 397 a~~~ 400 (548)
+.++
T Consensus 362 ~v~~ 365 (449)
T 1b89_A 362 AVNY 365 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-17 Score=160.42 Aligned_cols=308 Identities=10% Similarity=0.018 Sum_probs=232.5
Q ss_pred hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHh
Q 038673 52 SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYAN 131 (548)
Q Consensus 52 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 131 (548)
...+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|+++.+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--------------- 65 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIA--------------- 65 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---------------
Confidence 3456666667777777888888877777764 55667777777777777777777777655422
Q ss_pred CCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC----CHhhHHHH------------HHHH
Q 038673 132 NGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET----DYVTLVGV------------ISAC 195 (548)
Q Consensus 132 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~l------------l~~~ 195 (548)
..+.+...|..+...|...|++++|...|++..+. .| +...+..+ ...+
T Consensus 66 -------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (359)
T 3ieg_A 66 -------------LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDA 130 (359)
T ss_dssp -------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------hCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01234556777777777777777777777777654 33 22233333 5678
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHH
Q 038673 196 AQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAA 272 (548)
Q Consensus 196 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 272 (548)
...|++++|...++.+.+..+. +..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|
T Consensus 131 ~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 131 FDGADYTAAITFLDKILEVCVW---DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999999999988755 889999999999999999999999998764 4678899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCChh-----H
Q 038673 273 IQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPNGG-----V 346 (548)
Q Consensus 273 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~-----~ 346 (548)
+..|++..+. .|+.......+.... .......+...+.+.|++++|.+.+++.. ..|+.. .
T Consensus 208 ~~~~~~a~~~--~~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 274 (359)
T 3ieg_A 208 LSEVRECLKL--DQDHKRCFAHYKQVK-----------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS 274 (359)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHHHHhh--CccchHHHHHHHHHH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 9999999874 454433211111100 11223345778899999999999999874 345532 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 347 WGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 347 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
+..+...+...|+++.|...++++.+..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4446678999999999999999999999999999999999999999999999999998753
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-18 Score=180.39 Aligned_cols=357 Identities=12% Similarity=0.012 Sum_probs=278.1
Q ss_pred CCcchHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHH
Q 038673 1 MDSFPRLVFEQVK---YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQ 77 (548)
Q Consensus 1 ~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~ 77 (548)
++++|.+.|+++. +.++..|..+...|.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...++
T Consensus 40 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~- 117 (537)
T 3fp2_A 40 NFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLS- 117 (537)
T ss_dssp CCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH-
Confidence 4678888887654 4577899999999999999999999999999853 3367788999999999999999999986
Q ss_pred HHHhCCCC------------------------------------CChh------------------------------HH
Q 038673 78 TILLGGFT------------------------------------SDLY------------------------------VG 91 (548)
Q Consensus 78 ~~~~~~~~------------------------------------~~~~------------------------------~~ 91 (548)
.+...+-. |+.. ..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (537)
T 3fp2_A 118 VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLS 197 (537)
T ss_dssp HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHH
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHH
Confidence 33221000 0000 22
Q ss_pred HHHHHHHHH--------cCChHHHHHHHccCCC--CC--------eehHHHHHHHHHhCCChHHHHHHHccCC--CCChh
Q 038673 92 NTMIGMYVK--------CGFLGCSRKVFDEMPE--RD--------VVSWTELIVAYANNGDMESAGGLFNELP--LKDKV 151 (548)
Q Consensus 92 ~~li~~~~~--------~g~~~~A~~~~~~m~~--~~--------~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~ 151 (548)
..+...+.. .|++++|..+|+++.+ |+ ..+|..+...+...|++++|...|++.. .|+..
T Consensus 198 ~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~ 277 (537)
T 3fp2_A 198 DALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPN 277 (537)
T ss_dssp HHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCch
Confidence 222222221 2478899999998876 33 2246677788999999999999999875 45578
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDM 231 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~ 231 (548)
+|..+...|...|++++|+..|++..... +.+..++..+...+...|++++|...++.+.+.... +..++..+...
T Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~ 353 (537)
T 3fp2_A 278 SYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE---NVYPYIQLACL 353 (537)
T ss_dssp HHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Confidence 89999999999999999999999998764 446778899999999999999999999999987754 77889999999
Q ss_pred HhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCC
Q 038673 232 YSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGV 308 (548)
Q Consensus 232 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 308 (548)
|.+.|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. |+.. ..
T Consensus 354 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~-----------------~~ 414 (537)
T 3fp2_A 354 LYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQE-----------------KI 414 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHCS-----------------SC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--Ccch-----------------hh
Confidence 9999999999999998763 456789999999999999999999999988742 2111 11
Q ss_pred CcCHHHHHHHHHHHHHc----------CCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038673 309 SPSTDHYACMVDLLGRA----------GCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 309 ~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 376 (548)
......+..+...+.+. |++++|...|++.. ..| +...|..+...+...|+++.|...+++++++.|.
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 11223344556677777 99999999999874 345 4778888999999999999999999999999998
Q ss_pred CchhHH
Q 038673 377 KIGNYI 382 (548)
Q Consensus 377 ~~~~~~ 382 (548)
++....
T Consensus 495 ~~~~~~ 500 (537)
T 3fp2_A 495 MDEKLQ 500 (537)
T ss_dssp CHHHHH
T ss_pred cHHHHH
Confidence 775544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-17 Score=160.09 Aligned_cols=295 Identities=14% Similarity=-0.004 Sum_probs=202.2
Q ss_pred CChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHH
Q 038673 50 PVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAY 129 (548)
Q Consensus 50 p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 129 (548)
.+...+..+...+...|++++|..+++.+++.. +.+..++..++..+...|++++|...|+++.+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------- 84 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVD------------- 84 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH-------------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH-------------
Confidence 344445555555555555555555555555553 44444444455555555555555555443321
Q ss_pred HhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCC-ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHH
Q 038673 130 ANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNA-KPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVC 208 (548)
Q Consensus 130 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 208 (548)
..+.+...|..+...+...| ++++|...|++..... +.+...+..+...+...|++++|...+
T Consensus 85 ---------------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 148 (330)
T 3hym_B 85 ---------------LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAY 148 (330)
T ss_dssp ---------------HCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ---------------hCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 01234556666667777777 7777777777766543 224455667777777777777777777
Q ss_pred HHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 038673 209 EIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETK 285 (548)
Q Consensus 209 ~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 285 (548)
+.+.+.... +...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|++..+....
T Consensus 149 ~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 225 (330)
T 3hym_B 149 FTAAQLMKG---CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225 (330)
T ss_dssp HHHHHHTTT---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence 777776544 555666688888888888888888877653 35677888888888999999999999888763111
Q ss_pred CCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHH
Q 038673 286 PNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIA 363 (548)
Q Consensus 286 p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a 363 (548)
... ......+...+..+...|.+.|++++|.+.+++.. ..| +...|..+...+...|++++|
T Consensus 226 ~~~----------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 226 IGN----------------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp TSC----------------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred ccc----------------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence 000 00123345678899999999999999999999874 334 477888899999999999999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHH-HcCCc
Q 038673 364 QIAANHLFELEPDKIGNYIILSNIYA-SAGMW 394 (548)
Q Consensus 364 ~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~ 394 (548)
...+++++++.|+++..+..++.++. ..|+.
T Consensus 290 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 290 VDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 99999999999999999999999884 44543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-16 Score=150.19 Aligned_cols=287 Identities=10% Similarity=-0.009 Sum_probs=216.7
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHH
Q 038673 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTM 94 (548)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 94 (548)
.++..+..+...+...|++++|+++|+++.... +.+...+..++..+...|++++|...++.+++.. +.+..++..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHH
Confidence 466778889999999999999999999998853 3356677778888999999999999999999985 6778889999
Q ss_pred HHHHHHcC-ChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHH
Q 038673 95 IGMYVKCG-FLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYF 173 (548)
Q Consensus 95 i~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~ 173 (548)
...|...| ++++|...|++..+. .+.+...|..+...+...|++++|+..|
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 148 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTL----------------------------EKTYGPAWIAYGHSFAVESEHDQAMAAY 148 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTT----------------------------CTTCTHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHh----------------------------CCccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 99999999 888888887665431 1224556677777777777777777777
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---
Q 038673 174 ERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--- 250 (548)
Q Consensus 174 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--- 250 (548)
++..+.. +.+...+..+...+...|++++|...++.+.+.... +..++..+...|.+.|++++|...|+++.+
T Consensus 149 ~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 149 FTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE---DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp HHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 7776643 223445555677777777788888777777776543 677777888888888888888877776542
Q ss_pred ---------CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHH
Q 038673 251 ---------RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDL 321 (548)
Q Consensus 251 ---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~ 321 (548)
.+..+|..+...|...|++++|+..|++..+. .|+ +...+..+...
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~-----------------------~~~~~~~la~~ 279 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQ-----------------------NASTYSAIGYI 279 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT-----------------------CSHHHHHHHHH
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--Ccc-----------------------chHHHHHHHHH
Confidence 23467888888999999999999999998874 333 34567888889
Q ss_pred HHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHH-HhcCCHH
Q 038673 322 LGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGAC-QIHRNPE 361 (548)
Q Consensus 322 ~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~-~~~~~~~ 361 (548)
|.+.|++++|.+.+++.. ..|+ ...+..+..++ ...|+.+
T Consensus 280 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 280 HSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999998885 5565 56666666666 4555543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-17 Score=161.05 Aligned_cols=273 Identities=14% Similarity=0.038 Sum_probs=210.0
Q ss_pred HcCChHHHHH-HHccCCC-----C--CeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhH
Q 038673 100 KCGFLGCSRK-VFDEMPE-----R--DVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPRE 168 (548)
Q Consensus 100 ~~g~~~~A~~-~~~~m~~-----~--~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~ 168 (548)
-.|++++|.. .|++..+ | +...|..+...+.+.|++++|...|+++. +.+..+|..+...|...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3467777777 6665443 1 35567777788888888888888877764 3466788888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHH----------------HHHHHH
Q 038673 169 AIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGS----------------ALIDMY 232 (548)
Q Consensus 169 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~----------------~li~~y 232 (548)
|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.... +...+. .+...+
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA---YAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT---TGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 888888887754 446677888888888888888888888888876644 322222 233334
Q ss_pred hcCCCHHHHHHHHhcCCC--C---ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCC
Q 038673 233 SKCGSIDDAYRIFVGMKQ--R---NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG 307 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 307 (548)
..|++++|...|+++.+ | +..+|..+...|...|++++|+..|+++.+. .|+
T Consensus 193 -~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~-------------------- 249 (368)
T 1fch_A 193 -SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPN-------------------- 249 (368)
T ss_dssp -HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT--------------------
T ss_pred -hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcC--------------------
Confidence 88999999999998763 3 4678899999999999999999999999873 333
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--------
Q 038673 308 VSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDK-------- 377 (548)
Q Consensus 308 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------- 377 (548)
+...|..+...+.+.|++++|.+.++++. ..| +...|..+..++...|+++.|...+++++++.|++
T Consensus 250 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 326 (368)
T 1fch_A 250 ---DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG 326 (368)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence 34568889999999999999999999874 345 47788888899999999999999999999988877
Q ss_pred ---chhHHHHHHHHHHcCCchHHHHHHH
Q 038673 378 ---IGNYIILSNIYASAGMWDDVSRVRR 402 (548)
Q Consensus 378 ---~~~~~~l~~~~~~~g~~~~a~~~~~ 402 (548)
...|..++.+|...|++++|..+++
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 7899999999999999999998875
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=8e-16 Score=146.46 Aligned_cols=250 Identities=10% Similarity=-0.005 Sum_probs=197.5
Q ss_pred HHHHhCCChHHHHHHHccCCCCCh----hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChh
Q 038673 127 VAYANNGDMESAGGLFNELPLKDK----VAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIK 202 (548)
Q Consensus 127 ~~~~~~g~~~~A~~~f~~m~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 202 (548)
+-....|++..|+..++.....++ .....+.++|...|++++|+..++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 344567888888888777654432 3445677889999999988876654 2 3567778888888888889999
Q ss_pred HHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 203 YANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 203 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
.|.+.++.+...+..| .+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|+.++|++.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P-~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDV-TNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHSCCCC-SCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCC-CCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 9999999988877656 5778888888999999999999999998 567788888999999999999999999999885
Q ss_pred CCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCH
Q 038673 283 ETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VEPNGGVWGALLGACQIHRNP 360 (548)
Q Consensus 283 g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~ 360 (548)
.|+.... .....++..+...|++++|..+|+++. ...+...|+.+..++...|++
T Consensus 160 --~p~~~~~---------------------~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 160 --DEDATLT---------------------QLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp --CTTCHHH---------------------HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCH
T ss_pred --CcCcHHH---------------------HHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Confidence 4553211 011223344455689999999998884 334678888899999999999
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchH-HHHHHHHHHh
Q 038673 361 EIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDD-VSRVRRLLKM 406 (548)
Q Consensus 361 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 406 (548)
++|+..++++++.+|+++.++..++.++...|++++ +.++++++.+
T Consensus 217 ~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999976 5688887765
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.9e-17 Score=159.92 Aligned_cols=256 Identities=11% Similarity=0.030 Sum_probs=201.8
Q ss_pred CeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 038673 118 DVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISA 194 (548)
Q Consensus 118 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 194 (548)
+...|..+...+.+.|++++|...|+++. +.+..+|..+...|.+.|++++|+..|+++.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 45567777888888888888888887764 3467788888889999999999999998887753 3457778888888
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCCChHh----------HHHHHHHHHhcCCCHHHHHHHHhcCCC--C---ChhhhHHH
Q 038673 195 CAQLGVIKYANWVCEIAEGSGFGPINNVV----------VGSALIDMYSKCGSIDDAYRIFVGMKQ--R---NVFSYSSM 259 (548)
Q Consensus 195 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~----------~~~~li~~y~~~g~~~~A~~~~~~~~~--~---~~~~~~~l 259 (548)
+...|++++|...++.+.+.... +.. ++..+...|.+.|++++|...|+++.+ | +..+|..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPK---YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHH---HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCcc---chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 88999999999999888876532 322 334458899999999999999998863 2 57789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 260 ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 260 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
...|...|++++|+..|+++.+. .|+ +..+|..+..+|.+.|++++|.+.|++..
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~--~p~-----------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV--RPE-----------------------DYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCC-----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999873 333 34568889999999999999999998874
Q ss_pred -CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------------CchhHHHHHHHHHHcCCchHHHHHHH
Q 038673 340 -VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPD------------KIGNYIILSNIYASAGMWDDVSRVRR 402 (548)
Q Consensus 340 -~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~ 402 (548)
..|+ ..+|..+..++...|++++|...+++++++.|+ +...+..|..++...|+.+.+.++.+
T Consensus 275 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 275 EIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred hcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 4555 788888989999999999999999999997776 35688999999999999998887764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-14 Score=149.26 Aligned_cols=352 Identities=12% Similarity=0.007 Sum_probs=290.1
Q ss_pred CCCcchHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhc----cCCcHHHHHHHHHHHHhCCCC
Q 038673 14 YKNPFLWTALIRGYIL----QGHLKDSISLYCSMRREGIGPVSFTLSALFKACTE----VLDVSLGQQIHAQTILLGGFT 85 (548)
Q Consensus 14 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~ 85 (548)
..++.++..+-..|.. .+++++|+..|++..+.| +...+..|...+.. .++.++|...++...+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3467778888888888 899999999999998864 56778888888877 899999999999998865
Q ss_pred CChhHHHHHHHHHHH----cCChHHHHHHHccCCC-CCeehHHHHHHHHHh----CCChHHHHHHHccCCC-CChhHHHH
Q 038673 86 SDLYVGNTMIGMYVK----CGFLGCSRKVFDEMPE-RDVVSWTELIVAYAN----NGDMESAGGLFNELPL-KDKVAWTA 155 (548)
Q Consensus 86 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~-~~~~~~~~ 155 (548)
+...+..|..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|.+.|++..+ .+..++..
T Consensus 110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~ 188 (490)
T 2xm6_A 110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQ 188 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 56777888888988 7899999999998765 456678888888887 8899999999987653 47788889
Q ss_pred HHHHHHH----CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCChHhHHHH
Q 038673 156 MVTGYVQ----NAKPREAIEYFERMQYAGVETDYVTLVGVISACAQ----LGVIKYANWVCEIAEGSGFGPINNVVVGSA 227 (548)
Q Consensus 156 li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 227 (548)
+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...++...+.+ +...+..
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~ 260 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG-----NSIAQFR 260 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-----CHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHH
Confidence 9999988 899999999999988865 45567777777765 789999999999988764 4557777
Q ss_pred HHHHHhc----CCCHHHHHHHHhcCCC-CChhhhHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038673 228 LIDMYSK----CGSIDDAYRIFVGMKQ-RNVFSYSSMILGFAMH-----GRAHAAIQLFGDMVKTETKPNGVTFIGVLTA 297 (548)
Q Consensus 228 li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 297 (548)
|..+|.. .++.++|...|++..+ .+...+..+...|... ++.++|+..|++..+.|
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-------------- 326 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-------------- 326 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--------------
Confidence 8888887 8999999999998765 4667777888888877 89999999999988753
Q ss_pred HhhcCCccCCCCcCHHHHHHHHHHHHHcC---CHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 038673 298 CSHVGLKCYGVSPSTDHYACMVDLLGRAG---CLEEALKMVEKMPVEPNGGVWGALLGACQI----HRNPEIAQIAANHL 370 (548)
Q Consensus 298 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~ 370 (548)
+...+..+..+|...| ++++|.+.|++.....++..+..|-..+.. .+++++|...+++.
T Consensus 327 -------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 327 -------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp -------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred -------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 2234666777777656 789999999887534567888888888888 89999999999999
Q ss_pred hhcCCCCchhHHHHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 038673 371 FELEPDKIGNYIILSNIYAS----AGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 371 ~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 409 (548)
.+.. ++..+..|+.+|.. .+++++|...+++..+.+.
T Consensus 394 ~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 394 AEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8754 56789999999998 8999999999999988774
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-15 Score=154.08 Aligned_cols=367 Identities=10% Similarity=-0.056 Sum_probs=249.9
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHC-----C--CCC-ChhhHHHHHHHhhccCCcHHHHHHHHHHHHhC-----C
Q 038673 17 PFLWTALIRGYILQGHLKDSISLYCSMRRE-----G--IGP-VSFTLSALFKACTEVLDVSLGQQIHAQTILLG-----G 83 (548)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~-----~ 83 (548)
...||.|...+...|++++|++.|++..+. + ..| ...+|+.+..++...|++++|...++.+++.. .
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 457999999999999999999999887641 1 123 35678999999999999999999999887642 0
Q ss_pred CC-CChhHHHHHHHHHHHcC--ChHHHHHHHccCCC--C-CeehHHHHHHH---HHhCCChHHHHHHHccCC---CCChh
Q 038673 84 FT-SDLYVGNTMIGMYVKCG--FLGCSRKVFDEMPE--R-DVVSWTELIVA---YANNGDMESAGGLFNELP---LKDKV 151 (548)
Q Consensus 84 ~~-~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~--~-~~~~~~~li~~---~~~~g~~~~A~~~f~~m~---~~~~~ 151 (548)
.. ....++..+..++.+.| ++++|...|++..+ | +...+..+... +...++.++|++.|++.. +.+..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 11 23456666666666554 68999999998764 4 34455544444 456678888888877643 44666
Q ss_pred HHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHH
Q 038673 152 AWTAMVTGYVQ----NAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSA 227 (548)
Q Consensus 152 ~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 227 (548)
.+..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...+..+.+..+. +..++..
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~ 286 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN---NAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC---hHHHHHH
Confidence 77766655554 467889999999887754 456677888999999999999999999999988755 7788888
Q ss_pred HHHHHhcC-------------------CCHHHHHHHHhcCC---CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 038673 228 LIDMYSKC-------------------GSIDDAYRIFVGMK---QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETK 285 (548)
Q Consensus 228 li~~y~~~-------------------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 285 (548)
+...|... +..+.|...|+... ..+..+|..+...|...|++++|+..|++..+. .
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--~ 364 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK--E 364 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--C
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--C
Confidence 87776532 23566777776654 345678899999999999999999999999884 3
Q ss_pred CCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHH-HHHHcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCCHHHH
Q 038673 286 PNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVD-LLGRAGCLEEALKMVEKMP-VEPNGGVWGALLGACQIHRNPEIA 363 (548)
Q Consensus 286 p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a 363 (548)
|+..... ..+..+.. .+...|++++|++.|++.- +.|+...+... .+.+
T Consensus 365 ~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l 415 (472)
T 4g1t_A 365 LTPVAKQ--------------------LLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKL 415 (472)
T ss_dssp CCHHHHH--------------------HHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHH
T ss_pred CCChHHH--------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHH
Confidence 4332111 11222222 2346799999999998763 66775444332 3455
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEE
Q 038673 364 QIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSWL 418 (548)
Q Consensus 364 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~ 418 (548)
..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.|-......+|+
T Consensus 416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 6778888889999999999999999999999999999999988765544445554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.3e-17 Score=159.28 Aligned_cols=257 Identities=11% Similarity=-0.062 Sum_probs=201.2
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHH
Q 038673 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTM 94 (548)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 94 (548)
.+...|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|...++.+++.. +.+..++..+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 139 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMAL 139 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHH
Confidence 355668889999999999999999999998753 3367788889999999999999999999999875 6678889999
Q ss_pred HHHHHHcCChHHHHHHHccCCC--C-C----------eehHHHHHHHHHhCCChHHHHHHHccCC---CC--ChhHHHHH
Q 038673 95 IGMYVKCGFLGCSRKVFDEMPE--R-D----------VVSWTELIVAYANNGDMESAGGLFNELP---LK--DKVAWTAM 156 (548)
Q Consensus 95 i~~~~~~g~~~~A~~~~~~m~~--~-~----------~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~--~~~~~~~l 156 (548)
..+|...|++++|...|+++.+ | + ...+..+...+...|++++|...|+++. +. +..+|..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999988764 1 1 2233445778888899999999888775 22 57788888
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCC
Q 038673 157 VTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCG 236 (548)
Q Consensus 157 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g 236 (548)
...|...|++++|+..|++..+.. +.+..++..+..++...|++++|...++.+.+..+. +..++..+..+|.+.|
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG---FIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHCC
Confidence 888999999999999998887753 446778888888888999999999999988887644 7888888899999999
Q ss_pred CHHHHHHHHhcCCC--C-------------ChhhhHHHHHHHHhcCCHHHHHHHHHH
Q 038673 237 SIDDAYRIFVGMKQ--R-------------NVFSYSSMILGFAMHGRAHAAIQLFGD 278 (548)
Q Consensus 237 ~~~~A~~~~~~~~~--~-------------~~~~~~~li~~~~~~g~~~~A~~l~~~ 278 (548)
++++|...|+++.+ | +...|..+..++...|+.+.+....++
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999888887753 1 256788888888888888887776654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=156.76 Aligned_cols=257 Identities=11% Similarity=-0.017 Sum_probs=200.3
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 038673 16 NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMI 95 (548)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 95 (548)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+++.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~ 139 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALA 139 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 45678888888999999999999999988753 3366778888888888999999999999988875 66788888899
Q ss_pred HHHHHcCChHHHHHHHccCCC--C-CeehHHH---------------HHHHHHhCCChHHHHHHHccCC---CC--ChhH
Q 038673 96 GMYVKCGFLGCSRKVFDEMPE--R-DVVSWTE---------------LIVAYANNGDMESAGGLFNELP---LK--DKVA 152 (548)
Q Consensus 96 ~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~---------------li~~~~~~g~~~~A~~~f~~m~---~~--~~~~ 152 (548)
.+|...|++++|...|+++.+ | +...+.. .+..+...|++++|...|+++. +. +..+
T Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 140 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 999999999999998887653 2 2222211 2333347888888888888764 22 4678
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMY 232 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y 232 (548)
|..+...|.+.|++++|+..|+++.... +.+..++..+...+...|++++|...++.+.+..+. +..++..+...|
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~ 295 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG---YIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHH
Confidence 8888888888899999988888887653 345677888888888888899998888888877543 778888888888
Q ss_pred hcCCCHHHHHHHHhcCCC---CC-----------hhhhHHHHHHHHhcCCHHHHHHHHHHH
Q 038673 233 SKCGSIDDAYRIFVGMKQ---RN-----------VFSYSSMILGFAMHGRAHAAIQLFGDM 279 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~~~~---~~-----------~~~~~~li~~~~~~g~~~~A~~l~~~m 279 (548)
.+.|++++|...|+++.+ .+ ..+|..+..+|...|+.++|..++++.
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 888998888888887653 12 567888888888888888888877643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.7e-16 Score=145.90 Aligned_cols=264 Identities=11% Similarity=-0.023 Sum_probs=206.9
Q ss_pred HHHcCChHHHHHHHccCCCCC----eehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHH
Q 038673 98 YVKCGFLGCSRKVFDEMPERD----VVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYF 173 (548)
Q Consensus 98 ~~~~g~~~~A~~~~~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~ 173 (548)
....|++..|...++.....+ ......+..+|...|++++|...++....++..++..+...+...|+.++|++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l 88 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL 88 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 345688888888887766533 2344567788899999999998888766667778888999999999999999999
Q ss_pred HHHHHCCCCCC-HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--
Q 038673 174 ERMQYAGVETD-YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-- 250 (548)
Q Consensus 174 ~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 250 (548)
+++...+..|+ ...+..+..++...|++++|.+.++. | .+..++..++..|.+.|++++|.+.|+++.+
T Consensus 89 ~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~-~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 89 DREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------G-DSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------C-CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 99988776565 44556666888999999999999886 3 5888999999999999999999999999874
Q ss_pred CChhhhHHH----HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcC
Q 038673 251 RNVFSYSSM----ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAG 326 (548)
Q Consensus 251 ~~~~~~~~l----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g 326 (548)
|+.. ...+ +..+...|++++|+.+|+++.+. .|+ +...++.+..++.+.|
T Consensus 161 p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~-----------------------~~~~~~~la~~~~~~g 214 (291)
T 3mkr_A 161 EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSP-----------------------TLLLLNGQAACHMAQG 214 (291)
T ss_dssp TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCC-----------------------CHHHHHHHHHHHHHTT
T ss_pred cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCC-----------------------cHHHHHHHHHHHHHcC
Confidence 4432 2222 33344568999999999999984 343 4567889999999999
Q ss_pred CHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHH-HHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 038673 327 CLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEI-AQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSR 399 (548)
Q Consensus 327 ~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 399 (548)
++++|.+.|++.- ..|+ +.+|..+...+...|+.++ +.++++++++++|+++.+ .+...+.+.++++..
T Consensus 215 ~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 215 RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVL 286 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHH
Confidence 9999999999863 4564 7889999999999998865 678999999999998843 334455555555543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-16 Score=150.09 Aligned_cols=255 Identities=11% Similarity=0.028 Sum_probs=190.0
Q ss_pred ehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 038673 120 VSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACA 196 (548)
Q Consensus 120 ~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 196 (548)
..|..+...+...|++++|..+|+++. +.+...|..+...+...|++++|...|+++.+.. +.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 344455555555566666665555543 2356667777777777777777777777776653 335566677777777
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCChHhHHHHH--------------HH-HHhcCCCHHHHHHHHhcCCC---CChhhhHH
Q 038673 197 QLGVIKYANWVCEIAEGSGFGPINNVVVGSAL--------------ID-MYSKCGSIDDAYRIFVGMKQ---RNVFSYSS 258 (548)
Q Consensus 197 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~l--------------i~-~y~~~g~~~~A~~~~~~~~~---~~~~~~~~ 258 (548)
..|++++|.+.++.+.+.... +...+..+ .. .+...|++++|.+.++++.+ .+...+..
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ---YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT---TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc---cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 777777777777777766533 33333333 33 47788889999998888753 46678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038673 259 MILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKM 338 (548)
Q Consensus 259 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 338 (548)
+...|...|++++|+..++++.+. .|+ +...+..+...+...|++++|.+.+++.
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~--~~~-----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL--RPD-----------------------DAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCC-----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 889999999999999999998873 333 3456888889999999999999999887
Q ss_pred C-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------------CchhHHHHHHHHHHcCCchHHHHHHHH
Q 038673 339 P-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPD------------KIGNYIILSNIYASAGMWDDVSRVRRL 403 (548)
Q Consensus 339 ~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 403 (548)
. ..| +..+|..+...+...|+++.|...++++++..|+ ++..+..++.+|...|++++|..++++
T Consensus 233 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3 344 4778888889999999999999999999999998 688999999999999999999998764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.5e-17 Score=158.97 Aligned_cols=279 Identities=11% Similarity=0.079 Sum_probs=111.0
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHc
Q 038673 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFN 143 (548)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 143 (548)
+.|+++.|.++++++ +++.+|..|+.++.+.|++++|.+.|.+. +|..+|..++..+...|++++|+..++
T Consensus 15 ~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345556666665554 11236666666666666666666666443 344466666666666666666666544
Q ss_pred cCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCCh
Q 038673 144 ELPL--KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINN 221 (548)
Q Consensus 144 ~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 221 (548)
...+ +++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.++.|..+|..+
T Consensus 86 ~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------- 148 (449)
T 1b89_A 86 MARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------- 148 (449)
T ss_dssp -----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----------
T ss_pred HHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------
Confidence 4432 234556666666666666666665553 245556666666666666666666666543
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhc
Q 038673 222 VVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV 301 (548)
Q Consensus 222 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 301 (548)
..|..|++++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~----------------------- 202 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH----------------------- 202 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----------------------
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHH-----------------------
Confidence 24556666666666666666666666 2556666666666666666666332221
Q ss_pred CCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcC--CHHHHHHHHHHHhhcCC--
Q 038673 302 GLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHR--NPEIAQIAANHLFELEP-- 375 (548)
Q Consensus 302 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~p-- 375 (548)
+..++.....++..|.+.|++++|..+++..- ..+- ...|+-|--++++.+ +..+..+.|..-..+.|
T Consensus 203 ------L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~ 276 (449)
T 1b89_A 203 ------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL 276 (449)
T ss_dssp ------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHH
T ss_pred ------HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHH
Confidence 22344456678999999999999999998763 4433 667777766666653 34444455444444555
Q ss_pred ---CCchhHHHHHHHHHHcCCchHHHHH
Q 038673 376 ---DKIGNYIILSNIYASAGMWDDVSRV 400 (548)
Q Consensus 376 ---~~~~~~~~l~~~~~~~g~~~~a~~~ 400 (548)
.+...|.-++..|..-+.|+.|..+
T Consensus 277 ~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 277 RAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 5677899999999999999999875
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-14 Score=149.48 Aligned_cols=359 Identities=9% Similarity=0.012 Sum_probs=201.2
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 038673 16 NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMI 95 (548)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 95 (548)
|...|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+++.|..+|+.+++. .|+...|..++
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHH
Confidence 5667888887 46778888888888888764 2335566777788888888888888888888774 34666777776
Q ss_pred HHH-HHcCChHHHHH----HHccCC-----C-CCeehHHHHHHHHHh---------CCChHHHHHHHccCCC-CC---hh
Q 038673 96 GMY-VKCGFLGCSRK----VFDEMP-----E-RDVVSWTELIVAYAN---------NGDMESAGGLFNELPL-KD---KV 151 (548)
Q Consensus 96 ~~~-~~~g~~~~A~~----~~~~m~-----~-~~~~~~~~li~~~~~---------~g~~~~A~~~f~~m~~-~~---~~ 151 (548)
... ...|+.+.|++ +|+... . ++...|...+....+ .|+++.|..+|++... |+ ..
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 34566665554 555432 1 345567666665544 5778888888877543 21 12
Q ss_pred HHHHHHHHH-------------HHCCChhHHHHHHHHHH------HCC---CCCCH--------hhHHHHHHHHHc----
Q 038673 152 AWTAMVTGY-------------VQNAKPREAIEYFERMQ------YAG---VETDY--------VTLVGVISACAQ---- 197 (548)
Q Consensus 152 ~~~~li~~~-------------~~~g~~~~A~~l~~~m~------~~g---~~p~~--------~t~~~ll~~~~~---- 197 (548)
.|....... .+.+++.+|..++.++. +.. ++|+. ..|...+.....
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 333222110 12345666766666532 111 24431 234333332221
Q ss_pred cCCh----hHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc-------CCCHH-------HHHHHHhcCCC---C-Chhh
Q 038673 198 LGVI----KYANWVCEIAEGSGFGPINNVVVGSALIDMYSK-------CGSID-------DAYRIFVGMKQ---R-NVFS 255 (548)
Q Consensus 198 ~g~~----~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~ 255 (548)
.++. +.+..+|++++...+ .+..+|..++..+.+ .|+++ +|..+|++..+ | +...
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p---~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLG---HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 1222 356677777777643 367777777777765 67765 77788777653 2 4567
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038673 256 YSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMV 335 (548)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 335 (548)
|..++..+...|++++|..+|+++.+ +.|+..+ ..|..++..+.+.|++++|.++|
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~----------------------~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPT----------------------LVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHH----------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCch----------------------HHHHHHHHHHHHhcCHHHHHHHH
Confidence 77777777778888888888888776 3444211 12444444444445555555555
Q ss_pred HhCC-CCCC-hhHHHHHHH-HHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 336 EKMP-VEPN-GGVWGALLG-ACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 336 ~~m~-~~p~-~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
++.. ..|+ ...|..... .+...|+.+.|..+|+++++..|+++..+..++..+.+.|+.++|..++++...
T Consensus 380 ~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 380 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 4442 1121 111111111 112344555555555555555555544555555555555555555555555444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-14 Score=149.50 Aligned_cols=347 Identities=12% Similarity=0.001 Sum_probs=281.7
Q ss_pred CcchHHHhccCC-CCCcchHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhc----cCCcHHHH
Q 038673 2 DSFPRLVFEQVK-YKNPFLWTALIRGYIL----QGHLKDSISLYCSMRREGIGPVSFTLSALFKACTE----VLDVSLGQ 72 (548)
Q Consensus 2 ~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~~~~~~a~ 72 (548)
++.|...|.... ..++..+..|-..|.. .+++++|++.|++..+.| +...+..+...+.. .+++++|.
T Consensus 59 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 135 (490)
T 2xm6_A 59 LTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESV 135 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 355677776443 3466788889999998 899999999999999865 66777778777777 78999999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHH----cCChHHHHHHHccCCC-CCeehHHHHHHHHHh----CCChHHHHHHHc
Q 038673 73 QIHAQTILLGGFTSDLYVGNTMIGMYVK----CGFLGCSRKVFDEMPE-RDVVSWTELIVAYAN----NGDMESAGGLFN 143 (548)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~f~ 143 (548)
..++...+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+...|.. .++.++|.+.|+
T Consensus 136 ~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 136 KWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 9999998876 56788888889987 7899999999998765 567788888888988 899999999998
Q ss_pred cCC-CCChhHHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCChhHHHHHHHHHHHc
Q 038673 144 ELP-LKDKVAWTAMVTGYVQ----NAKPREAIEYFERMQYAGVETDYVTLVGVISACAQ----LGVIKYANWVCEIAEGS 214 (548)
Q Consensus 144 ~m~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~ 214 (548)
+.. ..+..++..+...|.. .+++++|..+|++..+.| +...+..+...+.. .++.++|...++...+.
T Consensus 212 ~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 212 KSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 865 3467788888888887 899999999999988765 44566666666766 78999999999999876
Q ss_pred CCCCCChHhHHHHHHHHHhcC-----CCHHHHHHHHhcCCC-CChhhhHHHHHHHHhcC---CHHHHHHHHHHHHHcCCC
Q 038673 215 GFGPINNVVVGSALIDMYSKC-----GSIDDAYRIFVGMKQ-RNVFSYSSMILGFAMHG---RAHAAIQLFGDMVKTETK 285 (548)
Q Consensus 215 ~~~p~~~~~~~~~li~~y~~~-----g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~ 285 (548)
+ +...+..|..+|... +++++|...|++..+ .+...+..+...|...| +.++|++.|++..+.|
T Consensus 289 ~-----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~-- 361 (490)
T 2xm6_A 289 G-----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG-- 361 (490)
T ss_dssp T-----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--
T ss_pred C-----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--
Confidence 4 556778888999887 999999999998764 46677888888888766 7899999999998752
Q ss_pred CCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----c
Q 038673 286 PNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGR----AGCLEEALKMVEKMPVEPNGGVWGALLGACQI----H 357 (548)
Q Consensus 286 p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~ 357 (548)
++..+..|..+|.. .+++++|.+.|++.....+...+..|-..+.. .
T Consensus 362 -------------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 362 -------------------------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred -------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCC
Confidence 34557778888887 89999999999987533467788888888887 8
Q ss_pred CCHHHHHHHHHHHhhcCCC---CchhHHHHHHHHHH
Q 038673 358 RNPEIAQIAANHLFELEPD---KIGNYIILSNIYAS 390 (548)
Q Consensus 358 ~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 390 (548)
++.++|...+++..+..|+ ++.....|..++..
T Consensus 417 ~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999999998854 66566666555443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.4e-15 Score=152.64 Aligned_cols=376 Identities=10% Similarity=-0.009 Sum_probs=276.4
Q ss_pred CcchHHHhccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHh-hccCCcHHHHH----
Q 038673 2 DSFPRLVFEQVKY---KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKAC-TEVLDVSLGQQ---- 73 (548)
Q Consensus 2 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~-~~~~~~~~a~~---- 73 (548)
++.|+.+|+++.. .+...|...+..+.+.|++++|..+|++.... .|+...|...+... ...|+.+.|.+
T Consensus 28 ~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~ 105 (530)
T 2ooe_A 28 IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQ 105 (530)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHH
Confidence 4678899987754 35567999999999999999999999999985 47877777776533 34577776655
Q ss_pred HHHHHHHhCCCC-CChhHHHHHHHHHHH---------cCChHHHHHHHccCCC-CCe---ehHHHHHHHH----------
Q 038673 74 IHAQTILLGGFT-SDLYVGNTMIGMYVK---------CGFLGCSRKVFDEMPE-RDV---VSWTELIVAY---------- 129 (548)
Q Consensus 74 ~~~~~~~~~~~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~-~~~---~~~~~li~~~---------- 129 (548)
+|+..++.-|.. ++..+|...+....+ .|+++.|+++|++..+ |+. ..|.......
T Consensus 106 ~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~ 185 (530)
T 2ooe_A 106 AYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKK 185 (530)
T ss_dssp HHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHH
Confidence 777777652244 456788888887765 7899999999998775 332 2343322211
Q ss_pred ---HhCCChHHHHHHHcc-------CC------CCC--------hhHHHHHHHHHHHC----CCh----hHHHHHHHHHH
Q 038673 130 ---ANNGDMESAGGLFNE-------LP------LKD--------KVAWTAMVTGYVQN----AKP----REAIEYFERMQ 177 (548)
Q Consensus 130 ---~~~g~~~~A~~~f~~-------m~------~~~--------~~~~~~li~~~~~~----g~~----~~A~~l~~~m~ 177 (548)
.+.++++.|..++.. +. .|+ ...|...+.....+ ++. ++|..+|++..
T Consensus 186 ~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al 265 (530)
T 2ooe_A 186 MIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCL 265 (530)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHH
Confidence 123566777765553 11 122 34676666544332 232 37888999988
Q ss_pred HCCCCCCHhhHHHHHHHHHc-------cCChh-------HHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHH
Q 038673 178 YAGVETDYVTLVGVISACAQ-------LGVIK-------YANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYR 243 (548)
Q Consensus 178 ~~g~~p~~~t~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~ 243 (548)
... +-+...|......+.+ .|+++ +|..+++..++. ..| .+..++..++..+.+.|++++|..
T Consensus 266 ~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p-~~~~l~~~~~~~~~~~g~~~~A~~ 342 (530)
T 2ooe_A 266 LVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLK-KNMLLYFAYADYEESRMKYEKVHS 342 (530)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCS-SCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCc-ccHHHHHHHHHHHHhcCCHHHHHH
Confidence 752 3456677777777765 79987 899999999862 124 589999999999999999999999
Q ss_pred HHhcCCC--C-Ch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHH
Q 038673 244 IFVGMKQ--R-NV-FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMV 319 (548)
Q Consensus 244 ~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li 319 (548)
+|+++.+ | +. ..|..++..+.+.|+.++|.++|++..+. .|+. ...|...+
T Consensus 343 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~-----------------------~~~~~~~a 397 (530)
T 2ooe_A 343 IYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTR-----------------------HHVYVTAA 397 (530)
T ss_dssp HHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCC-----------------------THHHHHHH
T ss_pred HHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCc-----------------------hHHHHHHH
Confidence 9998763 3 33 47999999999999999999999999873 3331 12232222
Q ss_pred HH-HHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch----hHHHHHHHHHHcC
Q 038673 320 DL-LGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG----NYIILSNIYASAG 392 (548)
Q Consensus 320 ~~-~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g 392 (548)
.. +...|+.++|..+|++.- ..| +...|..++......|+.+.|..+|+++++..|.++. .|...+......|
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 22 346899999999999763 345 4789999999999999999999999999998776654 7777888888999
Q ss_pred CchHHHHHHHHHHhC
Q 038673 393 MWDDVSRVRRLLKMT 407 (548)
Q Consensus 393 ~~~~a~~~~~~m~~~ 407 (548)
+.+.+..+.+++.+.
T Consensus 478 ~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 478 DLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=6.8e-16 Score=149.31 Aligned_cols=259 Identities=10% Similarity=-0.079 Sum_probs=217.7
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 038673 16 NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMI 95 (548)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 95 (548)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+...+...|+++.|...++.+++.. +.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHH
Confidence 55678888999999999999999999998853 3367788889999999999999999999999986 77888999999
Q ss_pred HHHHHcCChHHHHHHHccCCC--C-CeehHHHH--------------HH-HHHhCCChHHHHHHHccCC---CCChhHHH
Q 038673 96 GMYVKCGFLGCSRKVFDEMPE--R-DVVSWTEL--------------IV-AYANNGDMESAGGLFNELP---LKDKVAWT 154 (548)
Q Consensus 96 ~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~f~~m~---~~~~~~~~ 154 (548)
..|...|++++|.+.|+++.+ | +...+..+ .. .+...|++++|...|+++. +.+...+.
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 176 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHA 176 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Confidence 999999999999999988754 2 22333333 22 3777889999999998865 34678999
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc
Q 038673 155 AMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK 234 (548)
Q Consensus 155 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~ 234 (548)
.+...|...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.+.... +..++..+...|.+
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG---YVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHH
Confidence 99999999999999999999998764 446778889999999999999999999999887644 78899999999999
Q ss_pred CCCHHHHHHHHhcCCC--C-------------ChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 235 CGSIDDAYRIFVGMKQ--R-------------NVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 235 ~g~~~~A~~~~~~~~~--~-------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
.|++++|.+.|+++.+ | +...|..+...+...|+.++|..++++..+
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999988753 2 367889999999999999999999876543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-17 Score=171.13 Aligned_cols=146 Identities=10% Similarity=0.084 Sum_probs=121.3
Q ss_pred ehHHHHHHHHHhCCChHHHHHHHccCC-------CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 038673 120 VSWTELIVAYANNGDMESAGGLFNELP-------LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVI 192 (548)
Q Consensus 120 ~~~~~li~~~~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 192 (548)
.|||+||.+|++.|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|...|+.||.+||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 478999999999999999999986653 6899999999999999999999999999999999999999999999
Q ss_pred HHHHccCCh-hHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CChhhhHHHHHHHHhc
Q 038673 193 SACAQLGVI-KYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----RNVFSYSSMILGFAMH 266 (548)
Q Consensus 193 ~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~ 266 (548)
.++++.|.. +.|.+++++|.+.|+.| |..+|++++..+.+.+-++...+++..+.. +.+.+.+.|.+.|.+.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~P--D~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKL--QALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCS--HHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCC--ChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 999999985 78999999999999996 999999999888877666666555544442 1233445555666655
Q ss_pred C
Q 038673 267 G 267 (548)
Q Consensus 267 g 267 (548)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.2e-17 Score=169.21 Aligned_cols=120 Identities=12% Similarity=0.052 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHH---CCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQY---AGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGS 226 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~ 226 (548)
..|||+||.+|++.|+.++|.++|++|.+ .|+.||.+||++||.+|++.|++++|.++|++|.+.|+.| |..+||
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P--DvvTYn 204 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP--DLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC--CHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--cHHHHH
Confidence 45899999999999999999999988764 5788999999999999999999999999999999999885 555555
Q ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcC
Q 038673 227 ALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGR-AHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302 (548)
Q Consensus 227 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 302 (548)
+|| .++++.|+ .++|.++|++|.+.|+.||.+||++++.++.+.+
T Consensus 205 tLI-------------------------------~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 205 AAL-------------------------------QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHH-------------------------------HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHH-------------------------------HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 555 45555554 3455666666666666666666665444444433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-13 Score=146.66 Aligned_cols=333 Identities=13% Similarity=0.092 Sum_probs=213.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCC--CCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 038673 20 WTALIRGYILQGHLKDSISLYCSMRREGI--GPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGM 97 (548)
Q Consensus 20 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 97 (548)
-...+++|...|.+.+|++++++....+- .-+...-+.++....+. +...+.......- ......+...
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd--------~~d~~eIA~I 1058 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD--------NYDAPDIANI 1058 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh--------hccHHHHHHH
Confidence 35667888899999999999999884321 01223344455555444 4555555544432 1224446677
Q ss_pred HHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHH
Q 038673 98 YVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQ 177 (548)
Q Consensus 98 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 177 (548)
+...|.+++|..+|++... .....+.++ -..|++++|.++.++.. +..+|..+..++.+.|++++|++.|.+.
T Consensus 1059 ai~lglyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 7788888888888888642 111122222 26778888888887663 4677888888888888888888888553
Q ss_pred HCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhH
Q 038673 178 YAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYS 257 (548)
Q Consensus 178 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~ 257 (548)
-|...|..++.+|.+.|+++++.+++....+... ++.+.+.++.+|++.+++++...+. ..++...|.
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~----e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~ 1199 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR----ESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQ 1199 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc----cccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHH
Confidence 3666778888888888888888888888777652 2233345888888888888655443 345666777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC-----ccCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 038673 258 SMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL-----KCYGVSPSTDHYACMVDLLGRAGCLEEAL 332 (548)
Q Consensus 258 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 332 (548)
.+...|...|++++|..+|.... .|..+...+.+.|. ...+-..+..+|..+..++...|++..|.
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA~---------ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhh---------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHH
Confidence 78888888888888888888742 34444444444432 11111123445555555555555555555
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHc
Q 038673 333 KMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASA 391 (548)
Q Consensus 333 ~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 391 (548)
.....+. .++..+..++..|...|.+++|..+++..+.++|.+...|.-|+.+|++-
T Consensus 1271 ~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1271 MCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 5544322 23344446666666777777777777777777766666666666666654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.6e-14 Score=131.31 Aligned_cols=226 Identities=12% Similarity=0.009 Sum_probs=187.7
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-Ch---HhHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPI-NN---VVVG 225 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~---~~~~ 225 (548)
...|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+.+...... .. ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567888889999999999999999988876 6777888888999999999999999998877543200 01 6888
Q ss_pred HHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCcc
Q 038673 226 SALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKC 305 (548)
Q Consensus 226 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 305 (548)
..+...|.+.|++++|...|+++.+.+.. ...+...|++++|+..++++... .|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~------------------ 137 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPE------------------ 137 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHH------------------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--Ccc------------------
Confidence 99999999999999999999887642211 24566778899999999998873 333
Q ss_pred CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHH
Q 038673 306 YGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYII 383 (548)
Q Consensus 306 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 383 (548)
+...+..+...+...|++++|...+++.. ..| +..+|..+...+...|+++.|...++++++..|+++..+..
T Consensus 138 -----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 212 (258)
T 3uq3_A 138 -----KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 212 (258)
T ss_dssp -----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 33567888899999999999999999874 334 57888888899999999999999999999999999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhC
Q 038673 384 LSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 384 l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
++.+|...|++++|.+.+++..+.
T Consensus 213 l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 213 KATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999988653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-12 Score=141.91 Aligned_cols=355 Identities=13% Similarity=0.084 Sum_probs=266.8
Q ss_pred cchHHHhccCCC-C-----CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHH
Q 038673 3 SFPRLVFEQVKY-K-----NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHA 76 (548)
Q Consensus 3 ~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~ 76 (548)
.+|.++++++.- | +....|.++....+. +..+..+..++... .....+...+...|.+++|..+|+
T Consensus 1002 ~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEEAf~IYk 1073 (1630)
T 1xi4_A 1002 NELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNELFEEAFAIFR 1073 (1630)
T ss_pred HHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCCHHHHHHHHH
Confidence 456777766552 2 335677788877777 55666666665542 113447778889999999999998
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHH
Q 038673 77 QTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAM 156 (548)
Q Consensus 77 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l 156 (548)
... ......+.++. ..|++++|.++.++.. +..+|..+..++...|++++|.+.|.+. .|...|..+
T Consensus 1074 Ka~------~~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eV 1140 (1630)
T 1xi4_A 1074 KFD------VNTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEV 1140 (1630)
T ss_pred HcC------CHHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHH
Confidence 852 12222333332 7789999999998774 4678999999999999999999999764 688889999
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCC
Q 038673 157 VTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCG 236 (548)
Q Consensus 157 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g 236 (548)
+..+.+.|++++|.++|...++.. ++....+.++.+|++.++++....+. + . .+...+..+.+.|...|
T Consensus 1141 a~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~--~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1141 VQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---G--PNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---C--CCHHHHHHHHHHHHhcC
Confidence 999999999999999999877653 34333445888999999888644442 1 2 25566777999999999
Q ss_pred CHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC------ccCCCCc
Q 038673 237 SIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL------KCYGVSP 310 (548)
Q Consensus 237 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~------~~~~~~p 310 (548)
++++|..+|..+ ..|..+...|.+.|++++|++.+++. -+..+|..+-.+|...|. ...++..
T Consensus 1210 ~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv 1278 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV 1278 (1630)
T ss_pred CHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc
Confidence 999999999996 48999999999999999999999987 345788877778866654 2223556
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhc--CCHHHHHHHHHHHhhcCC-----CCchhH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIH--RNPEIAQIAANHLFELEP-----DKIGNY 381 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~p-----~~~~~~ 381 (548)
++..+..++..|.+.|.+++|+.+++..- +.|. ...|.-|..++.+. ++..++.+.|..-..+.| .+...|
T Consensus 1279 ~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW 1358 (1630)
T 1xi4_A 1279 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLW 1358 (1630)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHH
Confidence 78889999999999999999999997663 4443 44555555555554 344555556655554544 456689
Q ss_pred HHHHHHHHHcCCchHHHHH
Q 038673 382 IILSNIYASAGMWDDVSRV 400 (548)
Q Consensus 382 ~~l~~~~~~~g~~~~a~~~ 400 (548)
.-++..|.+.|+|+.|..+
T Consensus 1359 ~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1359 AELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHhcccHHHHHHH
Confidence 9999999999999999854
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.5e-14 Score=127.18 Aligned_cols=207 Identities=13% Similarity=0.020 Sum_probs=134.0
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSAL 228 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 228 (548)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++..+. +...+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~l 79 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR---YLGGYMVL 79 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHH
Confidence 44455555556666666666666666555432 224444555555555556666666666555555433 44455555
Q ss_pred HHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCC
Q 038673 229 IDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGV 308 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 308 (548)
...|.+.+. .. .+ .+...|++++|+..|++..+ +.|+
T Consensus 80 g~~~~~~~~---------~~--~~---------~~~~~g~~~~A~~~~~~al~--~~P~--------------------- 116 (217)
T 2pl2_A 80 SEAYVALYR---------QA--ED---------RERGKGYLEQALSVLKDAER--VNPR--------------------- 116 (217)
T ss_dssp HHHHHHHHH---------TC--SS---------HHHHHHHHHHHHHHHHHHHH--HCTT---------------------
T ss_pred HHHHHHhhh---------hh--hh---------hcccccCHHHHHHHHHHHHH--hCcc---------------------
Confidence 444443210 00 00 11223999999999999988 4555
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 038673 309 SPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNI 387 (548)
Q Consensus 309 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 387 (548)
+...+..+..+|...|++++|+..|++.. +..+...|..+..++...|++++|...++++++.+|+++..+..++.+
T Consensus 117 --~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~ 194 (217)
T 2pl2_A 117 --YAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASA 194 (217)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 34568888899999999999999998873 226788899999999999999999999999999999999999999999
Q ss_pred HHHcCCchHHHHHHHHH
Q 038673 388 YASAGMWDDVSRVRRLL 404 (548)
Q Consensus 388 ~~~~g~~~~a~~~~~~m 404 (548)
+...|++++|.+.+++.
T Consensus 195 ~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 195 LLLKGKAEEAARAAALE 211 (217)
T ss_dssp HTC--------------
T ss_pred HHHccCHHHHHHHHHHH
Confidence 99999999999988754
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-13 Score=127.74 Aligned_cols=243 Identities=13% Similarity=-0.020 Sum_probs=182.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHH
Q 038673 121 SWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD--YVTLVGVISAC 195 (548)
Q Consensus 121 ~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~ 195 (548)
.+......+...|++++|...|++.. +.+...|..+...|...|++++|+..|++....+-.|+ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 44455666777777777777777653 33566888999999999999999999999987432222 22378888899
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHH
Q 038673 196 AQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAA 272 (548)
Q Consensus 196 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 272 (548)
...|++++|...++.+.+.... +..++..+...|...|++++|...|++..+ .+...|..+...+...+++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT---RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987655 778999999999999999999999999875 3556777777344445699999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCC---HHHHHHHHHhCC----CCCCh-
Q 038673 273 IQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGC---LEEALKMVEKMP----VEPNG- 344 (548)
Q Consensus 273 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~----~~p~~- 344 (548)
++.|+++.+. .|+. ...+..+...+...|+ +++|...+++.. ..|+.
T Consensus 162 ~~~~~~a~~~--~p~~-----------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 216 (272)
T 3u4t_A 162 DSSFVKVLEL--KPNI-----------------------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216 (272)
T ss_dssp HHHHHHHHHH--STTC-----------------------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG
T ss_pred HHHHHHHHHh--Cccc-----------------------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc
Confidence 9999999883 4442 3445566667776676 666666666552 12332
Q ss_pred -----hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHc
Q 038673 345 -----GVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASA 391 (548)
Q Consensus 345 -----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 391 (548)
.+|..+...+...|+++.|...++++++++|+++.+...+.......
T Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 217 KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 46777778899999999999999999999999987777666555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.3e-13 Score=137.00 Aligned_cols=328 Identities=9% Similarity=-0.081 Sum_probs=209.9
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHC-----C-CCC-ChhhHHHHHHHhhc--cCCcHHHHHHHHHHHHhCCCCC
Q 038673 16 NPFLWTALIRGYILQGHLKDSISLYCSMRRE-----G-IGP-VSFTLSALFKACTE--VLDVSLGQQIHAQTILLGGFTS 86 (548)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~~~~~ll~a~~~--~~~~~~a~~~~~~~~~~~~~~~ 86 (548)
..++|+.+...|...|++++|...|++..+. + ..+ ...++.....++.. .+++++|...|+.+++.. |.
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~ 170 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PK 170 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TT
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CC
Confidence 4578999999999999999999999887652 1 112 23456655555544 356899999999999986 56
Q ss_pred ChhHHHHHHHHH---HHcCChHHHHHHHccCCC---CCeehHHHHHHHHHh----CCChHHHHHHHccCC---CCChhHH
Q 038673 87 DLYVGNTMIGMY---VKCGFLGCSRKVFDEMPE---RDVVSWTELIVAYAN----NGDMESAGGLFNELP---LKDKVAW 153 (548)
Q Consensus 87 ~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~---~~~~~~~ 153 (548)
++..+..+..++ ...++.++|.+.|++..+ .+..++..+...+.. .|++++|.+.+++.. +.+..++
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~ 250 (472)
T 4g1t_A 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL 250 (472)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHH
T ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHH
Confidence 677777666654 445777788888776543 345556555555444 467889999988754 4567889
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc-------------------CChhHHHHHHHHHHHc
Q 038673 154 TAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQL-------------------GVIKYANWVCEIAEGS 214 (548)
Q Consensus 154 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~-------------------g~~~~a~~~~~~~~~~ 214 (548)
..+...|...|++++|+..|++..+.. +-+..++..+..++... +..+.|...++.+.+.
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 999999999999999999999988753 33445555555444321 2356777888888776
Q ss_pred CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--CChh----hhHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCC
Q 038673 215 GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--RNVF----SYSSMIL-GFAMHGRAHAAIQLFGDMVKTETKPN 287 (548)
Q Consensus 215 ~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~----~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~ 287 (548)
.+. +..++..+...|.+.|++++|...|++..+ ++.. .+..+.. .+...|+.++|+..|++..+ +.|+
T Consensus 330 ~~~---~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~ 404 (472)
T 4g1t_A 330 NDN---LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQK 404 (472)
T ss_dssp CTT---TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCC
T ss_pred CCc---hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcc
Confidence 644 778889999999999999999999998753 3322 1222222 34567999999999999887 5555
Q ss_pred HhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CChhHHHHHHHHHHhcCCHHHHHH
Q 038673 288 GVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKM-PVE-PNGGVWGALLGACQIHRNPEIAQI 365 (548)
Q Consensus 288 ~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~ 365 (548)
..... +....+.+++++. ... .+..+|..+-..+...|++++|.+
T Consensus 405 ~~~~~---------------------------------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 405 SREKE---------------------------------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp CHHHH---------------------------------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred cHHHH---------------------------------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 33211 1112222333322 123 357889999999999999999999
Q ss_pred HHHHHhhcCCCCchhHHHH
Q 038673 366 AANHLFELEPDKIGNYIIL 384 (548)
Q Consensus 366 ~~~~~~~~~p~~~~~~~~l 384 (548)
.+++++++.|.+|.+...+
T Consensus 452 ~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 452 DSERGLESGSLIPSASSWN 470 (472)
T ss_dssp -------------------
T ss_pred HHHHHHhcCCCCCcHhhcC
Confidence 9999999998887665544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-12 Score=119.64 Aligned_cols=203 Identities=14% Similarity=0.053 Sum_probs=155.4
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.... +..++..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR---NARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---cHHHHHHHH
Confidence 5677888888888889999998888887653 345667778888888888888888888888877644 777888888
Q ss_pred HHHhcCCCHHHHHHHHhcCCC----C-ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCc
Q 038673 230 DMYSKCGSIDDAYRIFVGMKQ----R-NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLK 304 (548)
Q Consensus 230 ~~y~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 304 (548)
..|.+.|++++|.+.|+++.+ | +...|..+...|...|++++|+..|+++.+. .|+
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~----------------- 173 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRN----------------- 173 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSC-----------------
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--Ccc-----------------
Confidence 888888888888888887765 2 3456777778888888888888888888763 232
Q ss_pred cCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 038673 305 CYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNY 381 (548)
Q Consensus 305 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 381 (548)
+...+..+...|...|++++|...+++.. ..| +...+..+...+...|+.+.|...++++.+..|+++...
T Consensus 174 ------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 174 ------QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred ------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 23456777788888888888888887763 333 456667777778888888888888888888888876443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-13 Score=126.63 Aligned_cols=238 Identities=7% Similarity=-0.183 Sum_probs=181.1
Q ss_pred hCCChHHHHHHHccCCCC-------ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhH
Q 038673 131 NNGDMESAGGLFNELPLK-------DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKY 203 (548)
Q Consensus 131 ~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 203 (548)
..|++++|...|+++... +..+|..+...|...|++++|+..|++..+.. +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677777777665432 45678888999999999999999999988764 4467788888999999999999
Q ss_pred HHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--CChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 204 ANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--RNVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 204 a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
|...++.+.+..+. +..++..+...|.+.|++++|...|+++.+ |+.......+..+...|++++|+..+++...
T Consensus 96 A~~~~~~al~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPT---YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc---ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999887644 778899999999999999999999998863 4444444455556777999999999988877
Q ss_pred cCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-----hhHHHHHHHHHH
Q 038673 282 TETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-----GGVWGALLGACQ 355 (548)
Q Consensus 282 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~~~~ 355 (548)
. .+++. ..+ .++..+...++.++|.+.+++.. ..|+ ..+|..+...+.
T Consensus 173 ~-~~~~~------------------------~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 226 (275)
T 1xnf_A 173 K-SDKEQ------------------------WGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYL 226 (275)
T ss_dssp H-SCCCS------------------------THH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred c-CCcch------------------------HHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHH
Confidence 4 12221 122 35566777788899999998764 2232 467788889999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 038673 356 IHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVR 401 (548)
Q Consensus 356 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 401 (548)
..|++++|...++++++.+|++...+ ..++...|++++|.+.+
T Consensus 227 ~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 227 SLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 99999999999999999999875443 55677888888887665
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=5e-13 Score=124.20 Aligned_cols=223 Identities=10% Similarity=-0.091 Sum_probs=157.4
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCC-CCCC----hhHH
Q 038673 17 PFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGG-FTSD----LYVG 91 (548)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~ 91 (548)
...|..+...+...|++++|+..|++..+.. ++..++..+...+...|++++|...++.+++..+ ..++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3468888889999999999999999998876 7788888899999999999999999998887540 1112 5677
Q ss_pred HHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHH
Q 038673 92 NTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIE 171 (548)
Q Consensus 92 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 171 (548)
..+...|.+.|++++|...|++..+.+ ++ ...+...|++++|..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------------------------~~-------~~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH-----------------------------RT-------ADILTKLRNAEKELK 126 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------CC-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC-----------------------------ch-------hHHHHHHhHHHHHHH
Confidence 788888888888888888876654311 11 123444556666666
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-
Q 038673 172 YFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ- 250 (548)
Q Consensus 172 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 250 (548)
.++++.... +.+...+..+...+...|++++|...++.+.+.... +..++..+...|.+.|++++|...|++..+
T Consensus 127 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 127 KAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 666666542 223445556666666777777777777777665533 666777777777777777777777776652
Q ss_pred --CChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 251 --RNVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 251 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
.+...|..+...|...|++++|...|++..+
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3456677777777778888888887777766
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.5e-12 Score=115.77 Aligned_cols=206 Identities=11% Similarity=-0.047 Sum_probs=151.6
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSAL 228 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 228 (548)
+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.... +..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l 82 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD---SAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChHHHHHH
Confidence 45677788888888888888888888877653 345667777888888888888888888888776544 67778888
Q ss_pred HHHHhcC-CCHHHHHHHHhcCCC--CC---hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcC
Q 038673 229 IDMYSKC-GSIDDAYRIFVGMKQ--RN---VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302 (548)
Q Consensus 229 i~~y~~~-g~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 302 (548)
...|... |++++|...|+++.+ .+ ...|..+...+...|++++|+..|+++.+. .|+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~--------------- 145 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQ--------------- 145 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT---------------
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---------------
Confidence 8888888 888888888877654 22 456777777888888888888888887763 232
Q ss_pred CccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 303 LKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEP--NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 303 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
+...+..+...+.+.|++++|.+.+++.. ..| +...+..+...+...|+.+.+...++.+.+..|+++.
T Consensus 146 --------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 146 --------FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp --------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred --------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 23456677777888888888888887763 233 4556666667777888888888888888877887765
Q ss_pred hHHH
Q 038673 380 NYII 383 (548)
Q Consensus 380 ~~~~ 383 (548)
....
T Consensus 218 ~~~~ 221 (225)
T 2vq2_A 218 LQTV 221 (225)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-13 Score=131.53 Aligned_cols=242 Identities=11% Similarity=0.005 Sum_probs=195.7
Q ss_pred ehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCC-hhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038673 120 VSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAK-PREAIEYFERMQYAGVETDYVTLVGVISAC 195 (548)
Q Consensus 120 ~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 195 (548)
..|+.+...+.+.|++++|+..|++.. ..+...|+.+...+...|+ +++|+..|++..... +-+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 457777777888888888888888764 4467889999999999996 999999999988764 33667788888889
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHh-cCCHHH
Q 038673 196 AQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAM-HGRAHA 271 (548)
Q Consensus 196 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-~g~~~~ 271 (548)
...|++++|...++.+++.... +..+|..+..+|.+.|++++|...|+++.+ .+...|+.+...+.. .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~---~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK---NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhCcc---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999999988755 889999999999999999999999998874 466789988888888 666577
Q ss_pred H-----HHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcC--CHHHHHHHHHhCCCCCC-
Q 038673 272 A-----IQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAG--CLEEALKMVEKMPVEPN- 343 (548)
Q Consensus 272 A-----~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p~- 343 (548)
| +..|++.+. +.|+ +...|..+..+|...| ++++|++.++++...|+
T Consensus 254 A~~~~el~~~~~Al~--l~P~-----------------------~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~ 308 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK--LVPH-----------------------NESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSS 308 (382)
T ss_dssp HHHHHHHHHHHHHHH--HSTT-----------------------CHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHH--HCCC-----------------------CHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCC
Confidence 7 588888887 4555 3456777888888877 68999999988765555
Q ss_pred hhHHHHHHHHHHhcC---------CHHHHHHHHHHH-hhcCCCCchhHHHHHHHHHH
Q 038673 344 GGVWGALLGACQIHR---------NPEIAQIAANHL-FELEPDKIGNYIILSNIYAS 390 (548)
Q Consensus 344 ~~~~~~ll~~~~~~~---------~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 390 (548)
...+..+...+...| ..++|..+++++ .+++|.....|..++..+..
T Consensus 309 ~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 309 PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 667777878887764 258999999999 89999999888888776654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-13 Score=122.86 Aligned_cols=206 Identities=11% Similarity=-0.054 Sum_probs=143.1
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHH
Q 038673 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNT 93 (548)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 93 (548)
++...|..+...+.+.|++++|+..|++..+. .| +...+..+...+...|++++|...++..++.. |.+...+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 46677888888888999999999999988874 34 56778888888888899999999999888875 667778888
Q ss_pred HHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHH
Q 038673 94 MIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAI 170 (548)
Q Consensus 94 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~ 170 (548)
+..+|.+.+.. . .+ .+...|++++|...|++.. +.+...|..+...|...|++++|+
T Consensus 79 lg~~~~~~~~~---------~--~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 79 LSEAYVALYRQ---------A--ED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp HHHHHHHHHHT---------C--SS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhh---------h--hh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHH
Confidence 88887776100 0 00 0011244444444444432 335677888888888999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 171 EYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 171 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
..|++..+.. .+...+..+..++...|++++|...++.+.+..+. +..++..+...|.+.|++++|...|++..
T Consensus 139 ~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 139 ASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK---DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9998888776 67778888888888999999999999988887644 78888888888999999999888887653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.4e-13 Score=123.54 Aligned_cols=210 Identities=12% Similarity=0.057 Sum_probs=133.6
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSAL 228 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 228 (548)
....|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.... +..++..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l 97 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS---AATAYYGA 97 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---chHHHHHH
Confidence 44567777777788888888888888877643 345666777777778888888888888887776543 67777777
Q ss_pred HHHHhcCCCHHHHHHHHhcCC---CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCcc
Q 038673 229 IDMYSKCGSIDDAYRIFVGMK---QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKC 305 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 305 (548)
...|...|++++|.+.|+++. ..+...|..+...+...|++++|+..++++.+. .|+
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~------------------ 157 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NEN------------------ 157 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTT------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCc------------------
Confidence 788888888888887777664 245566777777777888888888888777763 222
Q ss_pred CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHH
Q 038673 306 YGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYII 383 (548)
Q Consensus 306 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 383 (548)
+...+..+...+.+.|++++|.+.+++.. ..| +..+|..+...+...|+++.|...++++++..|+++..+..
T Consensus 158 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (243)
T 2q7f_A 158 -----DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232 (243)
T ss_dssp -----CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHH
Confidence 23456667777777777777777777653 223 36667777777777788888888888887777777766555
Q ss_pred HHHH
Q 038673 384 LSNI 387 (548)
Q Consensus 384 l~~~ 387 (548)
+..+
T Consensus 233 ~~~l 236 (243)
T 2q7f_A 233 KKLL 236 (243)
T ss_dssp HTC-
T ss_pred HHHH
Confidence 5433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-12 Score=118.46 Aligned_cols=198 Identities=11% Similarity=-0.089 Sum_probs=172.5
Q ss_pred HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHH
Q 038673 185 YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMIL 261 (548)
Q Consensus 185 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 261 (548)
...+..+...+...|++++|...++.+.+.... +..++..+...|.+.|++++|.+.|+++.+ .+...|..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS---SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHH
Confidence 456777888899999999999999999987644 788999999999999999999999998763 46778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-C
Q 038673 262 GFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-V 340 (548)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 340 (548)
.|...|++++|++.|+++...+..|+ +...+..+...|...|++++|.+.+++.. .
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~-----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPE-----------------------RSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTT-----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcc-----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999987333444 23457788899999999999999998874 3
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 341 EP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 341 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
.| +...|..+...+...|+++.|...++++.+..|++...+..++.+|...|++++|.++++++.+..
T Consensus 171 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 171 NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34 477888888999999999999999999999999999999999999999999999999999987643
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-13 Score=127.95 Aligned_cols=243 Identities=9% Similarity=-0.077 Sum_probs=145.4
Q ss_pred hCCCchHHHHHHHHHHHCCCC--C-ChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChH
Q 038673 29 LQGHLKDSISLYCSMRREGIG--P-VSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLG 105 (548)
Q Consensus 29 ~~g~~~~A~~~~~~m~~~g~~--p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 105 (548)
..|++++|+..|+++.+.... | +..++..+...+...|++++|...++.+++.. +.+..++..+..+|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHH
Confidence 457889999999999875321 1 45677888888889999999999999999875 667888889999999999999
Q ss_pred HHHHHHccCCC---CCeehHHHHHHHHHhCCChHHHHHHHccCC--CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC
Q 038673 106 CSRKVFDEMPE---RDVVSWTELIVAYANNGDMESAGGLFNELP--LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAG 180 (548)
Q Consensus 106 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 180 (548)
+|.+.|++..+ .+..+|..+...|.+.|++++|...|+++. .|+.......+..+...|++++|+..+++.....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 99988877653 244556666666666666666666665543 2222222223333344466666666665554432
Q ss_pred CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC--CCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHH
Q 038673 181 VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFG--PINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSS 258 (548)
Q Consensus 181 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 258 (548)
+++... ..++..+...++.++|...+..+.+.... | .+..++..+...|.+.|++++|...|+++.+.++..+..
T Consensus 175 -~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 175 -DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAE-HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccc-cccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 222222 22444445555555555555555433211 0 013555556666666666666666666555444444444
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 038673 259 MILGFAMHGRAHAAIQLF 276 (548)
Q Consensus 259 li~~~~~~g~~~~A~~l~ 276 (548)
...++...|++++|++-+
T Consensus 252 ~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 444555555555555443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.2e-12 Score=113.24 Aligned_cols=198 Identities=11% Similarity=-0.049 Sum_probs=171.7
Q ss_pred CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHH
Q 038673 184 DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMI 260 (548)
Q Consensus 184 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li 260 (548)
+...+..+...+...|++++|.+.++.+.+.... +..++..+...|...|++++|.+.|+++.+ .+..+|..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK---NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 4556778888899999999999999999987644 788999999999999999999999998763 4677899999
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 261 LGFAMH-GRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 261 ~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
..|... |++++|+..++++.+.+..|+ +...+..+...+...|++++|.+.++++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPT-----------------------PYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSC-----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcc-----------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999 999999999999988323333 23567888899999999999999998874
Q ss_pred -CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 340 -VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEP-DKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 340 -~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
..|+ ...|..+...+...|++++|...++++.+..| +++..+..++..+...|+.++|..+++.+.+.
T Consensus 141 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 141 AAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 3444 77888888999999999999999999999999 88889999999999999999999999988654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-12 Score=128.38 Aligned_cols=228 Identities=10% Similarity=0.019 Sum_probs=193.9
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC-hhHHHHHHHHHHHcCCCCCChHhHHHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGV-IKYANWVCEIAEGSGFGPINNVVVGSA 227 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~~~ 227 (548)
+...|+.+...+.+.|++++|+..|++..... +-+...|..+..++...|+ +++|...++.+++..+. +..+|..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~---~~~a~~~ 171 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK---NYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 45678899999999999999999999998763 3356778888999999996 99999999999998865 8999999
Q ss_pred HHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCc
Q 038673 228 LIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLK 304 (548)
Q Consensus 228 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 304 (548)
+..+|.+.|++++|...|+++.+ .+...|..+..++...|++++|+..|+++++ +.|+
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~----------------- 232 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVR----------------- 232 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTT-----------------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCC-----------------
Confidence 99999999999999999998874 5778999999999999999999999999998 4454
Q ss_pred cCCCCcCHHHHHHHHHHHHH-cCCHHHH-----HHHHHhCC-CCCC-hhHHHHHHHHHHhcC--CHHHHHHHHHHHhhcC
Q 038673 305 CYGVSPSTDHYACMVDLLGR-AGCLEEA-----LKMVEKMP-VEPN-GGVWGALLGACQIHR--NPEIAQIAANHLFELE 374 (548)
Q Consensus 305 ~~~~~p~~~~~~~li~~~~~-~g~~~~A-----~~~~~~m~-~~p~-~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~ 374 (548)
+...|+.+..+|.+ .|..++| ++.+++.. +.|+ ...|..+...+...| +.++|...++++ +.+
T Consensus 233 ------~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~ 305 (382)
T 2h6f_A 233 ------NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS 305 (382)
T ss_dssp ------CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT
T ss_pred ------CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC
Confidence 44568888888888 6665777 46666653 5565 778888888888888 689999999998 899
Q ss_pred CCCchhHHHHHHHHHHcC---------CchHHHHHHHHH-Hh
Q 038673 375 PDKIGNYIILSNIYASAG---------MWDDVSRVRRLL-KM 406 (548)
Q Consensus 375 p~~~~~~~~l~~~~~~~g---------~~~~a~~~~~~m-~~ 406 (548)
|+++..+..|+.+|.+.| .+++|.++++++ .+
T Consensus 306 p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 306 HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999875 258999999988 44
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-12 Score=118.70 Aligned_cols=197 Identities=9% Similarity=0.007 Sum_probs=155.8
Q ss_pred CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHH
Q 038673 184 DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMI 260 (548)
Q Consensus 184 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li 260 (548)
...++..+...+...|++++|...++.+.+.... +..++..+...|.+.|++++|.+.|+++.+ .+...|..+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE---DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 4456777778888999999999999999986644 788999999999999999999999998763 4677899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-
Q 038673 261 LGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP- 339 (548)
Q Consensus 261 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 339 (548)
..|...|++++|++.++++.+. .|+ +...+..+...+.+.|++++|.+.++++.
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~--~~~-----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 153 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA--GME-----------------------NGDLFYMLGTVLVKLEQPKLALPYLQRAVE 153 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--TCC-----------------------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCC-----------------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999999999999874 233 34567888899999999999999999874
Q ss_pred CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 340 VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 340 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
..| +...+..+...+...|+++.|...++++.+..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 154 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 154 LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 334 577888888999999999999999999999999999999999999999999999999999987643
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.7e-12 Score=117.00 Aligned_cols=232 Identities=13% Similarity=-0.035 Sum_probs=185.7
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHH
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALID 230 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~ 230 (548)
..+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+....|......+..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 455667788999999999999999998763 3345578888889999999999999999999854333233556899999
Q ss_pred HHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCC
Q 038673 231 MYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG 307 (548)
Q Consensus 231 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 307 (548)
.|.+.|++++|.+.|++..+ .+...|..+...|...|++++|+..|++..+. .|+
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~-------------------- 140 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTT-------------------- 140 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCC--------------------
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCC--------------------
Confidence 99999999999999998763 46678999999999999999999999998773 444
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCC---HHHHHHHHHHHhhcC---CCC--
Q 038673 308 VSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRN---PEIAQIAANHLFELE---PDK-- 377 (548)
Q Consensus 308 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~---p~~-- 377 (548)
+...+..+...+...+++++|.+.|++.. ..|+ ...+..+...+...++ .+.|...++++++.. |+.
T Consensus 141 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 217 (272)
T 3u4t_A 141 ---DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217 (272)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGH
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccch
Confidence 33456666633334569999999998874 4455 6677777788888888 888999999988854 442
Q ss_pred ---chhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 378 ---IGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 378 ---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
...|..++..|...|++++|.+.+++..+..
T Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 218 DELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2578889999999999999999999987643
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.8e-12 Score=126.75 Aligned_cols=345 Identities=10% Similarity=-0.032 Sum_probs=236.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCc---HHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 038673 23 LIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDV---SLGQQIHAQTILLGGFTSDLYVGNTMIGMYV 99 (548)
Q Consensus 23 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 99 (548)
+...+.+.|++++|+++|++..+.| +..++..+...+...|+. ++|...++...+. ++..+..|..++.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHH
Confidence 5566778899999999999998876 333444455555566776 8899998887642 5666777777555
Q ss_pred HcC-----ChHHHHHHHccCCC-CCeehHHHHHHHHHhCCChHHH---HHHHccCC-CCChhHHHHHHHHHHHCCChhHH
Q 038673 100 KCG-----FLGCSRKVFDEMPE-RDVVSWTELIVAYANNGDMESA---GGLFNELP-LKDKVAWTAMVTGYVQNAKPREA 169 (548)
Q Consensus 100 ~~g-----~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A---~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A 169 (548)
..| +.++|...|++..+ .+...+..|...|...+..+++ .+.+.... ..+...+..+...|...+.++++
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC
Confidence 555 77899999988765 3556788888888877664443 33333322 23567888888889888866665
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccC---ChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcC----CCHHHHH
Q 038673 170 IEYFERMQYAGVETDYVTLVGVISACAQLG---VIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKC----GSIDDAY 242 (548)
Q Consensus 170 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~----g~~~~A~ 242 (548)
......+.+.-...+...+..+...+...| +.++|...++...+.|.. +...+..|..+|... +++++|.
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~---~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV---TAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS---CHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 555443333212223337778888888899 899999999999999865 666667888888766 7999999
Q ss_pred HHHhcCCCCChhhhHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHH
Q 038673 243 RIFVGMKQRNVFSYSSMILG-F--AMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMV 319 (548)
Q Consensus 243 ~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li 319 (548)
+.|++....++..+..+... | ...++.++|+..|++..+.| +...+..|.
T Consensus 238 ~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---------------------------~~~A~~~Lg 290 (452)
T 3e4b_A 238 ALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---------------------------QPRAELLLG 290 (452)
T ss_dssp HHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---------------------------CHHHHHHHH
Confidence 99998884466777777776 4 46899999999999998764 234455666
Q ss_pred HHHHHcC-----CHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 038673 320 DLLGRAG-----CLEEALKMVEKMPVEPNGGVWGALLGACQI----HRNPEIAQIAANHLFELEPDKIGNYIILSNIYAS 390 (548)
Q Consensus 320 ~~~~~~g-----~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 390 (548)
.+|. .| ++++|.+.|++.. .-++..+..|-..|.. ..+.++|...+++..+ +.++.....|+.+|..
T Consensus 291 ~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 291 KLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQ 366 (452)
T ss_dssp HHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHS
T ss_pred HHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHh
Confidence 6666 45 9999999999998 5557777777666665 3499999999999886 3456688899999885
Q ss_pred ----cCCchHHHHHHHHHHhCCC
Q 038673 391 ----AGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 391 ----~g~~~~a~~~~~~m~~~g~ 409 (548)
..+.++|...++...+.|.
T Consensus 367 G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 367 GKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp CTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCC
Confidence 3578999999999887775
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.1e-11 Score=111.50 Aligned_cols=224 Identities=13% Similarity=-0.012 Sum_probs=177.5
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCChHhH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQ----LGVIKYANWVCEIAEGSGFGPINNVVV 224 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~ 224 (548)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----CHHH
Confidence 56677778888888888888888888887733 44566777777777 888888888888888764 5567
Q ss_pred HHHHHHHHhc----CCCHHHHHHHHhcCCC-CChhhhHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038673 225 GSALIDMYSK----CGSIDDAYRIFVGMKQ-RNVFSYSSMILGFAM----HGRAHAAIQLFGDMVKTETKPNGVTFIGVL 295 (548)
Q Consensus 225 ~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 295 (548)
+..+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~------------ 144 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN------------ 144 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC------------
Confidence 7788888888 8888888888887654 466778888888888 899999999999888753
Q ss_pred HHHhhcCCccCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHH
Q 038673 296 TACSHVGLKCYGVSPSTDHYACMVDLLGR----AGCLEEALKMVEKMPVEPNGGVWGALLGACQI----HRNPEIAQIAA 367 (548)
Q Consensus 296 ~a~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~ 367 (548)
+...+..+...|.. .+++++|...|++..-..+...+..+-..+.. .+++++|...+
T Consensus 145 ---------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 209 (273)
T 1ouv_A 145 ---------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARY 209 (273)
T ss_dssp ---------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 22345666677777 88999999998876422356777777788888 89999999999
Q ss_pred HHHhhcCCCCchhHHHHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 038673 368 NHLFELEPDKIGNYIILSNIYAS----AGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 368 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 409 (548)
++..+..| +..+..|+.+|.. .|++++|.+.+++..+.|.
T Consensus 210 ~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 210 SKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 99988766 5688889999998 8999999999998887664
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=6e-12 Score=125.41 Aligned_cols=297 Identities=13% Similarity=0.011 Sum_probs=190.5
Q ss_pred hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCC----hhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHH
Q 038673 52 SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSD----LYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIV 127 (548)
Q Consensus 52 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~ 127 (548)
...+......+...|++++|...++.+++.. +.+ ..++..+...|...|++++|...|++.
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------- 73 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD------------- 73 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-------------
Confidence 3344445555666666666666666666654 223 245666667777777777777764432
Q ss_pred HHHhCCChHHHHHHHccCCCC--ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHccCC
Q 038673 128 AYANNGDMESAGGLFNELPLK--DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGV-ETD----YVTLVGVISACAQLGV 200 (548)
Q Consensus 128 ~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~ 200 (548)
..+......+ ...++..+...|...|++++|+..+++...... .++ ..++..+...+...|+
T Consensus 74 -----------l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 74 -----------LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp -----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 2222222211 234566666666677777777766666543210 011 2355566666667777
Q ss_pred --------------------hhHHHHHHHHHHHc----CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----C
Q 038673 201 --------------------IKYANWVCEIAEGS----GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----R 251 (548)
Q Consensus 201 --------------------~~~a~~~~~~~~~~----~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~ 251 (548)
+++|...+....+. +..| ....++..+...|...|++++|...|++..+ +
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRA-AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp TCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcH-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 77777777665432 2222 3456777888888888888888888877652 2
Q ss_pred C----hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcC
Q 038673 252 N----VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETK-PNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAG 326 (548)
Q Consensus 252 ~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g 326 (548)
+ ..+|..+...|...|++++|+..+++....... ++.. ....++..+...|...|
T Consensus 222 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------~~~~~~~~la~~~~~~g 281 (406)
T 3sf4_A 222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA--------------------VEAQSCYSLGNTYTLLQ 281 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------------------HHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCch--------------------HHHHHHHHHHHHHHHhC
Confidence 2 236788888899999999999999887753110 1110 01346778888999999
Q ss_pred CHHHHHHHHHhCC----CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------CCchhHHHHHHHHHHcC
Q 038673 327 CLEEALKMVEKMP----VEPN----GGVWGALLGACQIHRNPEIAQIAANHLFELEP------DKIGNYIILSNIYASAG 392 (548)
Q Consensus 327 ~~~~A~~~~~~m~----~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g 392 (548)
++++|.+.+++.. ..++ ..++..+...+...|+++.|...+++.+++.+ ....++..++.+|...|
T Consensus 282 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 282 DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 9999999988762 1122 45677777889999999999999999888422 23456778888888887
Q ss_pred Cch
Q 038673 393 MWD 395 (548)
Q Consensus 393 ~~~ 395 (548)
+..
T Consensus 362 ~~~ 364 (406)
T 3sf4_A 362 LSY 364 (406)
T ss_dssp TTS
T ss_pred HhH
Confidence 754
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-11 Score=112.81 Aligned_cols=223 Identities=12% Similarity=-0.021 Sum_probs=168.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHccCCC-CChhHHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038673 121 SWTELIVAYANNGDMESAGGLFNELPL-KDKVAWTAMVTGYVQ----NAKPREAIEYFERMQYAGVETDYVTLVGVISAC 195 (548)
Q Consensus 121 ~~~~li~~~~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 195 (548)
++..+...|...|++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 84 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 344444555555555555555555443 355677778888888 888888888888887765 566777777778
Q ss_pred Hc----cCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc----CCCHHHHHHHHhcCCC-CChhhhHHHHHHHHh-
Q 038673 196 AQ----LGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK----CGSIDDAYRIFVGMKQ-RNVFSYSSMILGFAM- 265 (548)
Q Consensus 196 ~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~- 265 (548)
.. .+++++|...++...+.+ +...+..+..+|.+ .+++++|...|++..+ .+...+..+...|..
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLK-----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAG 159 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hCCCCcccCHHHHHHHHHHHHHcC-----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC
Confidence 77 888888888888888764 56677888888888 8889999888887664 356677777778887
Q ss_pred ---cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHhC
Q 038673 266 ---HGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGR----AGCLEEALKMVEKM 338 (548)
Q Consensus 266 ---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m 338 (548)
.+++++|+..|++..+.+ +...+..+..+|.. .+++++|.+.|++.
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~~---------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 212 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDLK---------------------------DSPGCFNAGNMYHHGEGATKNFKEALARYSKA 212 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCC---------------------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 889999999999887742 23456677788888 89999999999876
Q ss_pred CCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCc
Q 038673 339 PVEPNGGVWGALLGACQI----HRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 339 ~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
....+...+..+-..+.. .+++++|...+++..+..|++.
T Consensus 213 ~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 213 CELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 422336677777788888 8999999999999999888653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-12 Score=130.43 Aligned_cols=234 Identities=11% Similarity=0.042 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHc----CCCCCChH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYA----GVET-DYVTLVGVISACAQLGVIKYANWVCEIAEGS----GFGPINNV 222 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~ 222 (548)
.|..+...|...|++++|+..|++.... +-.| ....+..+...+...|++++|...+..+.+. +..| ...
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~ 166 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL-SEG 166 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-HHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchH-HHH
Confidence 4556666666666666666666655432 1111 2334555666666777777777777666543 1112 345
Q ss_pred hHHHHHHHHHhcCCC-----------------HHHHHHHHhcCCC-----C----ChhhhHHHHHHHHhcCCHHHHHHHH
Q 038673 223 VVGSALIDMYSKCGS-----------------IDDAYRIFVGMKQ-----R----NVFSYSSMILGFAMHGRAHAAIQLF 276 (548)
Q Consensus 223 ~~~~~li~~y~~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~ 276 (548)
.++..+...|...|+ +++|.+.+++..+ . ...+|..+...|...|++++|+..|
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 677777777777787 7777777766532 1 2246777888888899999999988
Q ss_pred HHHHHcCCC-CCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-C---CCC----hhHH
Q 038673 277 GDMVKTETK-PNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-V---EPN----GGVW 347 (548)
Q Consensus 277 ~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~---~p~----~~~~ 347 (548)
++..+.... ++... ....+..+...|...|++++|.+.+++.. . ..+ ..++
T Consensus 247 ~~al~~~~~~~~~~~--------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 306 (411)
T 4a1s_A 247 QERLRIAREFGDRAA--------------------ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSC 306 (411)
T ss_dssp HHHHHHHHHHTCHHH--------------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHH--------------------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 887663100 01000 12357778888999999999999887762 1 111 4567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 348 GALLGACQIHRNPEIAQIAANHLFELEPDK------IGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 348 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
..+...+...|++++|...++++++..+.. ...+..++.+|...|++++|.+.+++..+
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 307 YSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 777788999999999999999988854332 34788899999999999999999998765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.7e-12 Score=130.98 Aligned_cols=209 Identities=11% Similarity=-0.017 Sum_probs=176.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCh-hHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHH
Q 038673 166 PREAIEYFERMQYAGVETDYVTLVGVISACAQLGVI-KYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRI 244 (548)
Q Consensus 166 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~ 244 (548)
+++++..+++..... +.+...+..+..++...|++ ++|.+.++.+++.... +..++..+...|.+.|++++|.+.
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE---LVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 566777777655432 34677788888888899999 9999999999887644 788999999999999999999999
Q ss_pred HhcCCC--CChhhhHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHH
Q 038673 245 FVGMKQ--RNVFSYSSMILGFAMH---------GRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTD 313 (548)
Q Consensus 245 ~~~~~~--~~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~ 313 (548)
|++..+ |+...|..+...|... |++++|+..|++..+. .|+ +..
T Consensus 160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~-----------------------~~~ 214 (474)
T 4abn_A 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVL-----------------------DGR 214 (474)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTT-----------------------CHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCC-----------------------CHH
Confidence 988764 6667888888888888 9999999999999883 454 345
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHhCC-CCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchh
Q 038673 314 HYACMVDLLGRA--------GCLEEALKMVEKMP-VEP----NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGN 380 (548)
Q Consensus 314 ~~~~li~~~~~~--------g~~~~A~~~~~~m~-~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 380 (548)
.|..+..+|... |++++|++.|++.. ..| +...|..+..++...|++++|...++++++++|+++..
T Consensus 215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a 294 (474)
T 4abn_A 215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 678888888888 99999999999874 456 58889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCchHHHHHHHH
Q 038673 381 YIILSNIYASAGMWDDVSRVRRL 403 (548)
Q Consensus 381 ~~~l~~~~~~~g~~~~a~~~~~~ 403 (548)
+..+..++...|++++|.+.++.
T Consensus 295 ~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 295 QQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999876543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.37 E-value=8e-12 Score=126.65 Aligned_cols=358 Identities=9% Similarity=0.023 Sum_probs=232.9
Q ss_pred CcchHHHhccCCC-CCcchHHHHHHHHHhCCCc---hHHHHHHHHHHHCCCCCChhhHHHHHHHhhccC-----CcHHHH
Q 038673 2 DSFPRLVFEQVKY-KNPFLWTALIRGYILQGHL---KDSISLYCSMRREGIGPVSFTLSALFKACTEVL-----DVSLGQ 72 (548)
Q Consensus 2 ~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~-----~~~~a~ 72 (548)
+++|.+.|.+.-+ .++..+..|-..|...|++ ++|+..|++..+. +...+..+...+...+ +.++|.
T Consensus 19 ~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~ 94 (452)
T 3e4b_A 19 TVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAE 94 (452)
T ss_dssp HHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHH
Confidence 4567788866543 3556677777778888888 8999999998863 5555666666444443 778999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHH---HHHHccCCC-CCeehHHHHHHHHHhCCC----hHHHHHHHcc
Q 038673 73 QIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCS---RKVFDEMPE-RDVVSWTELIVAYANNGD----MESAGGLFNE 144 (548)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A---~~~~~~m~~-~~~~~~~~li~~~~~~g~----~~~A~~~f~~ 144 (548)
..++...+.| .+ ..+..|..+|...+..+.+ .+.+....+ .+...+..+...|...+. .+++..++..
T Consensus 95 ~~~~~Aa~~g--~~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~ 170 (452)
T 3e4b_A 95 SLLKKAFANG--EG--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKA 170 (452)
T ss_dssp HHHHHHHHTT--CS--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHCC--CH--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 9999999877 33 3777788888876654433 333333322 456677888888888774 4555556666
Q ss_pred CCCCChhHHHHHHHHHHHCC---ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc----CChhHHHHHHHHHHHcCCC
Q 038673 145 LPLKDKVAWTAMVTGYVQNA---KPREAIEYFERMQYAGVETDYVTLVGVISACAQL----GVIKYANWVCEIAEGSGFG 217 (548)
Q Consensus 145 m~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~ 217 (548)
....++..+..|...|...| +.++|+..|++..+.| .++...+..+...|... ++.++|...|+... .
T Consensus 171 a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~--- 245 (452)
T 3e4b_A 171 ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P--- 245 (452)
T ss_dssp HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---
T ss_pred HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---
Confidence 66777779999999999999 9999999999999887 55666556666777555 68999999999987 2
Q ss_pred CCChHhHHHHHHHH-H--hcCCCHHHHHHHHhcCCC-CChhhhHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCCH
Q 038673 218 PINNVVVGSALIDM-Y--SKCGSIDDAYRIFVGMKQ-RNVFSYSSMILGFAMHG-----RAHAAIQLFGDMVKTETKPNG 288 (548)
Q Consensus 218 p~~~~~~~~~li~~-y--~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~ 288 (548)
.+...+..|..+ | ...|++++|.+.|++..+ .+...+..|...|. .| +.++|+..|++.. . +
T Consensus 246 --g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~----g- 316 (452)
T 3e4b_A 246 --GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G----R- 316 (452)
T ss_dssp --GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T----T-
T ss_pred --CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C----C-
Confidence 366778888887 4 568999999999998764 46677887877777 56 9999999998866 2 2
Q ss_pred hhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCCH
Q 038673 289 VTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGR----AGCLEEALKMVEKMPVEPNGGVWGALLGACQI----HRNP 360 (548)
Q Consensus 289 ~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~ 360 (548)
+...+..|..+|.. ..++++|...|++.-..-+......|-..|.. ..+.
T Consensus 317 ----------------------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 317 ----------------------EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp ----------------------CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCH
T ss_pred ----------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCH
Confidence 23345556666655 34899999999887533345555566666553 4689
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHH--HHcCCchHHHHHHHHHH
Q 038673 361 EIAQIAANHLFELEPDKIGNYIILSNIY--ASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 361 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~ 405 (548)
++|...++...+..+... ...+..+. ...++..+|.++.++-.
T Consensus 375 ~~A~~~~~~A~~~g~~~a--~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 375 LNAYVFSQLAKAQDTPEA--NDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHHHTTCCHHH--HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 999999999988665433 23333332 22234556666655543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-11 Score=121.00 Aligned_cols=276 Identities=12% Similarity=0.006 Sum_probs=197.5
Q ss_pred hHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCCh----hHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHH
Q 038673 54 TLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDL----YVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAY 129 (548)
Q Consensus 54 ~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 129 (548)
.+..+...+...|++++|...++.+++.. +.+. .++..+...|...|++++|...|++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~---------------- 111 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH---------------- 111 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH----------------
Confidence 34455566778889999999999888875 3343 4677888888888888888888544
Q ss_pred HhCCChHHHHHHHccCCCC--ChhHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHccCC--
Q 038673 130 ANNGDMESAGGLFNELPLK--DKVAWTAMVTGYVQNAKPREAIEYFERMQYA----GVET-DYVTLVGVISACAQLGV-- 200 (548)
Q Consensus 130 ~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~-- 200 (548)
|+++....... ...+|..+...|...|++++|+..|++.... +-.| ...++..+...+...|+
T Consensus 112 --------al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 183 (411)
T 4a1s_A 112 --------DLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHL 183 (411)
T ss_dssp --------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccc
Confidence 33333333211 3456777778888888888888888776542 1111 23456677777888888
Q ss_pred ---------------hhHHHHHHHHHHHc----CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CC----
Q 038673 201 ---------------IKYANWVCEIAEGS----GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----RN---- 252 (548)
Q Consensus 201 ---------------~~~a~~~~~~~~~~----~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~---- 252 (548)
+++|...+....+. +..| ....++..+...|...|++++|...|++..+ .+
T Consensus 184 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (411)
T 4a1s_A 184 GQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRG-AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAE 262 (411)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHH
Confidence 88888887776542 2222 3456888899999999999999999988763 12
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 038673 253 VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETK-PNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEA 331 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 331 (548)
..++..+...|...|++++|+..|++....... .+.. ....++..+...|...|++++|
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------~~~~~~~~la~~~~~~g~~~~A 322 (411)
T 4a1s_A 263 RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE--------------------VEAQSCYSLGNTYTLLHEFNTA 322 (411)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHH--------------------HHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH--------------------HHHHHHHHHHHHHHHcCCHHHH
Confidence 237888889999999999999999988763110 1100 1235678889999999999999
Q ss_pred HHHHHhCC-C---CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038673 332 LKMVEKMP-V---EPN----GGVWGALLGACQIHRNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 332 ~~~~~~m~-~---~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 376 (548)
.+.+++.. . .++ ..++..+...+...|++++|...+++.+++.+.
T Consensus 323 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 323 IEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 99998763 1 112 346777778999999999999999999987664
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.35 E-value=5.2e-11 Score=104.62 Aligned_cols=162 Identities=14% Similarity=0.115 Sum_probs=124.9
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTA 297 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 297 (548)
+..+|..+...|.+.|++++|.+.|++..+ .++.+|..+...|...|++++|+..+...... .|+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~---------- 71 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTT---------- 71 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCC----------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cch----------
Confidence 566777777777777777777777777653 35567777777788888888888888877663 333
Q ss_pred HhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038673 298 CSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEP 375 (548)
Q Consensus 298 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 375 (548)
+...+..+...+...+++++|.+.+.+.. ..|+ ...+..+...+...|++++|+..++++++.+|
T Consensus 72 -------------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 72 -------------SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138 (184)
T ss_dssp -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred -------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc
Confidence 23445666677778888888888887663 3344 66777777888899999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 376 DKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 376 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
.++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 99989999999999999999999999888654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.3e-12 Score=124.35 Aligned_cols=265 Identities=12% Similarity=0.035 Sum_probs=207.5
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-----hhhHHHHHHHhhccCCcHHHHHHHHHHHHhC---CCC-
Q 038673 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPV-----SFTLSALFKACTEVLDVSLGQQIHAQTILLG---GFT- 85 (548)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~---~~~- 85 (548)
+....+......+...|++++|+..|++..+. .|+ ..++..+...+...|+++.|...++.+++.. +..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 34556777888899999999999999999985 343 2567788888999999999999999876541 011
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHccCCC-----CC----eehHHHHHHHHHhCCC--------------------hH
Q 038673 86 SDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE-----RD----VVSWTELIVAYANNGD--------------------ME 136 (548)
Q Consensus 86 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~ 136 (548)
....++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2255788899999999999999999988764 22 3478888899999999 89
Q ss_pred HHHHHHccCCC-----C----ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC-CCCC----HhhHHHHHHHHHccCChh
Q 038673 137 SAGGLFNELPL-----K----DKVAWTAMVTGYVQNAKPREAIEYFERMQYAG-VETD----YVTLVGVISACAQLGVIK 202 (548)
Q Consensus 137 ~A~~~f~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~----~~t~~~ll~~~~~~g~~~ 202 (548)
+|.+.+.+... . ...++..+...|...|++++|+..|++..+.. -.++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 98888776431 1 24578889999999999999999999876531 0112 236778888899999999
Q ss_pred HHHHHHHHHHHcCCC---CCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CC----hhhhHHHHHHHHhcCCHH
Q 038673 203 YANWVCEIAEGSGFG---PINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----RN----VFSYSSMILGFAMHGRAH 270 (548)
Q Consensus 203 ~a~~~~~~~~~~~~~---p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~ 270 (548)
+|...++.+.+.... +.....++..+...|.+.|++++|...|++..+ .+ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999988753211 001266888999999999999999999988753 22 457888889999999999
Q ss_pred HHHHHHHHHHH
Q 038673 271 AAIQLFGDMVK 281 (548)
Q Consensus 271 ~A~~l~~~m~~ 281 (548)
+|...|++..+
T Consensus 325 ~A~~~~~~al~ 335 (406)
T 3sf4_A 325 QAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999776
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-12 Score=122.18 Aligned_cols=237 Identities=11% Similarity=0.036 Sum_probs=164.5
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc------C
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYA-------GVETDYVTLVGVISACAQLGVIKYANWVCEIAEGS------G 215 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~ 215 (548)
+..+|..+...|...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...++.+.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3557788888888888888888888887662 22333456777788888889999999888888764 3
Q ss_pred CCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-------C----ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 038673 216 FGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-------R----NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTE- 283 (548)
Q Consensus 216 ~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 283 (548)
..| ....++..+...|...|++++|...|+++.+ + ....+..+...|...|++++|++.|+++.+.-
T Consensus 106 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 106 DHP-AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TCH-HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCh-HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 233 4677888899999999999999998887652 1 23567888889999999999999999987630
Q ss_pred --CCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC----------CCCC-hhHHH--
Q 038673 284 --TKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP----------VEPN-GGVWG-- 348 (548)
Q Consensus 284 --~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~p~-~~~~~-- 348 (548)
..++.. .....+..+...|.+.|++++|.+.++++. ..|. ...|.
T Consensus 185 ~~~~~~~~--------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 244 (311)
T 3nf1_A 185 TKLGPDDP--------------------NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA 244 (311)
T ss_dssp HTSCTTCH--------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH
T ss_pred HHhCCCCH--------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Confidence 011110 123467888999999999999999998762 1122 12222
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 349 ----ALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 349 ----~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
.+...+...+.+..+...++......|..+.++..++.+|.+.|++++|.+++++..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 245 EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2223344555666677778888778888888999999999999999999999998764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.1e-12 Score=122.02 Aligned_cols=261 Identities=12% Similarity=0.072 Sum_probs=176.9
Q ss_pred HHHHhCCChHHHHHHHccCC---CCC----hhHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCC-CHhhHHHHHHH
Q 038673 127 VAYANNGDMESAGGLFNELP---LKD----KVAWTAMVTGYVQNAKPREAIEYFERMQYA----GVET-DYVTLVGVISA 194 (548)
Q Consensus 127 ~~~~~~g~~~~A~~~f~~m~---~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~ 194 (548)
..+...|++++|...|++.. +.+ ...|..+...|...|++++|+..+++.... +-.| ...++..+...
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 34444455555555544432 112 345667777777777777777777765432 1112 23456666777
Q ss_pred HHccCChhHHHHHHHHHHHcCCC---CCChHhHHHHHHHHHhcCCC--------------------HHHHHHHHhcCCC-
Q 038673 195 CAQLGVIKYANWVCEIAEGSGFG---PINNVVVGSALIDMYSKCGS--------------------IDDAYRIFVGMKQ- 250 (548)
Q Consensus 195 ~~~~g~~~~a~~~~~~~~~~~~~---p~~~~~~~~~li~~y~~~g~--------------------~~~A~~~~~~~~~- 250 (548)
+...|++++|...+..+.+.... +.....++..+...|...|+ +++|.+.+++..+
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 77788888888877776543211 00124477778888888888 8888887776542
Q ss_pred ----C----ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHH
Q 038673 251 ----R----NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETK-PNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDL 321 (548)
Q Consensus 251 ----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~ 321 (548)
+ ....+..+...|...|++++|+..+++..+.... ++.. .....+..+...
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~l~~~ 232 (338)
T 3ro2_A 173 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA--------------------AERRAYSNLGNA 232 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH--------------------HHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH--------------------HHHHHHHHHHHH
Confidence 1 1346777888899999999999999988753100 1110 012357788889
Q ss_pred HHHcCCHHHHHHHHHhCC----CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------chhHHHHHHH
Q 038673 322 LGRAGCLEEALKMVEKMP----VEPN----GGVWGALLGACQIHRNPEIAQIAANHLFELEPDK------IGNYIILSNI 387 (548)
Q Consensus 322 ~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~ 387 (548)
+...|++++|...+++.. ..++ ..++..+...+...|+++.|...++++++..|.. ..++..++.+
T Consensus 233 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 312 (338)
T 3ro2_A 233 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA 312 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999999999988762 1122 4566777788999999999999999998854432 3478889999
Q ss_pred HHHcCCchHHHHHHHHHHhC
Q 038673 388 YASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 388 ~~~~g~~~~a~~~~~~m~~~ 407 (548)
|...|++++|.+.+++..+.
T Consensus 313 ~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 313 YTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHC
T ss_pred HHHcCChHHHHHHHHHHHHH
Confidence 99999999999999988753
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-11 Score=119.07 Aligned_cols=262 Identities=13% Similarity=0.054 Sum_probs=204.4
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-----hhhHHHHHHHhhccCCcHHHHHHHHHHHHh----CCCCCChh
Q 038673 19 LWTALIRGYILQGHLKDSISLYCSMRREGIGPV-----SFTLSALFKACTEVLDVSLGQQIHAQTILL----GGFTSDLY 89 (548)
Q Consensus 19 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~~~~~~ 89 (548)
.+......+...|++++|+..|+++.+. .|+ ...+..+...+...|+++.|...++..++. +..+....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 4556677789999999999999999985 343 356778888899999999999999987654 20122356
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCCC-----CC----eehHHHHHHHHHhCCC--------------------hHHHHH
Q 038673 90 VGNTMIGMYVKCGFLGCSRKVFDEMPE-----RD----VVSWTELIVAYANNGD--------------------MESAGG 140 (548)
Q Consensus 90 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 140 (548)
++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 788899999999999999999988653 22 3378888899999999 999988
Q ss_pred HHccCCC-----C----ChhHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHccCChhHHHH
Q 038673 141 LFNELPL-----K----DKVAWTAMVTGYVQNAKPREAIEYFERMQYA----GVET-DYVTLVGVISACAQLGVIKYANW 206 (548)
Q Consensus 141 ~f~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~ 206 (548)
.+++... . ...++..+...|...|++++|...+++..+. +..+ ...++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8876531 1 2447888899999999999999999987643 1111 12367788888999999999999
Q ss_pred HHHHHHHcCCC---CCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CC----hhhhHHHHHHHHhcCCHHHHHH
Q 038673 207 VCEIAEGSGFG---PINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----RN----VFSYSSMILGFAMHGRAHAAIQ 274 (548)
Q Consensus 207 ~~~~~~~~~~~---p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~ 274 (548)
.++...+.... +.....++..+...|...|++++|...+++..+ .+ ..++..+...|...|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99988653211 102366788899999999999999999988753 22 3467788899999999999999
Q ss_pred HHHHHHHc
Q 038673 275 LFGDMVKT 282 (548)
Q Consensus 275 l~~~m~~~ 282 (548)
.+++..+.
T Consensus 325 ~~~~a~~~ 332 (338)
T 3ro2_A 325 FAEKHLEI 332 (338)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998873
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.1e-11 Score=128.29 Aligned_cols=162 Identities=17% Similarity=0.221 Sum_probs=136.6
Q ss_pred ChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 038673 220 NNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLT 296 (548)
Q Consensus 220 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 296 (548)
.+..+++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++.++ +.|+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~--------- 75 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPT--------- 75 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT---------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC---------
Confidence 5678888888888888888888888887763 3567788888888889999999999988887 4555
Q ss_pred HHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038673 297 ACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELE 374 (548)
Q Consensus 297 a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 374 (548)
+...|..+..+|.+.|++++|++.|++.- +.|+ ...|..+..++...|++++|+..++++++++
T Consensus 76 --------------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 141 (723)
T 4gyw_A 76 --------------FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141 (723)
T ss_dssp --------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34568888888999999999999888763 5565 7788888899999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 375 PDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 375 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
|+++..+..|+.+|...|+|++|.+.+++..+
T Consensus 142 P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 142 PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999999999988887653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.8e-10 Score=109.15 Aligned_cols=214 Identities=10% Similarity=0.058 Sum_probs=124.1
Q ss_pred HHHHHHHccCC---CCChhHHHHHHHHHH-------HCCCh-------hHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHc
Q 038673 136 ESAGGLFNELP---LKDKVAWTAMVTGYV-------QNAKP-------REAIEYFERMQYAGVET-DYVTLVGVISACAQ 197 (548)
Q Consensus 136 ~~A~~~f~~m~---~~~~~~~~~li~~~~-------~~g~~-------~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~ 197 (548)
++|..+|++.. ..++..|..++..+. +.|++ ++|..+|++.... +.| +...+..++..+..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 34444454443 235556666665554 34664 6677777666652 133 33456666666666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCChHh-HHHHHHHHHhcCCCHHHHHHHHhcCCCC---ChhhhHHHHHHH-HhcCCHHHH
Q 038673 198 LGVIKYANWVCEIAEGSGFGPINNVV-VGSALIDMYSKCGSIDDAYRIFVGMKQR---NVFSYSSMILGF-AMHGRAHAA 272 (548)
Q Consensus 198 ~g~~~~a~~~~~~~~~~~~~p~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~-~~~g~~~~A 272 (548)
.|++++|..+|+.+++..+. +.. +|..++..+.+.|++++|.++|++..+. +...|....... ...|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI---DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS---CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc---CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 67777777777776664322 333 6666677777777777777777666542 222232222221 125777777
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCC--ChhH
Q 038673 273 IQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP----VEP--NGGV 346 (548)
Q Consensus 273 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p--~~~~ 346 (548)
..+|++..+. .|+ +...|..++..+.+.|++++|..+|++.. +.| ....
T Consensus 189 ~~~~~~al~~--~p~-----------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 189 FKIFELGLKK--YGD-----------------------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp HHHHHHHHHH--HTT-----------------------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred HHHHHHHHHh--CCC-----------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 7777776652 233 23446666666667777777777776652 133 2446
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 347 WGALLGACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 347 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
|..++......|+.+.|..+++++.+..|++.
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 66666666677777777777777777777644
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-11 Score=116.20 Aligned_cols=247 Identities=10% Similarity=0.022 Sum_probs=156.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCC----CCChhHHHHHHHHHHHC
Q 038673 88 LYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELP----LKDKVAWTAMVTGYVQN 163 (548)
Q Consensus 88 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~ 163 (548)
..++..+...|...|++++|..+|+++. +++.... .....++..+...|...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~ 82 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQAL------------------------EDLEKTSGHDHPDVATMLNILALVYRDQ 82 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHHHCSSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HHHHHHcCCCCHHHHHHHHHHHHHHHHC
Confidence 4456666666666666666666644332 2222111 11345677788888888
Q ss_pred CChhHHHHHHHHHHHC------CCCC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHc------CCCCCChHhHHHHHHH
Q 038673 164 AKPREAIEYFERMQYA------GVET-DYVTLVGVISACAQLGVIKYANWVCEIAEGS------GFGPINNVVVGSALID 230 (548)
Q Consensus 164 g~~~~A~~l~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~~~li~ 230 (548)
|++++|+..|++.... +-.| ...++..+...+...|++++|...++.+.+. +..| ....++..+..
T Consensus 83 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~ 161 (311)
T 3nf1_A 83 NKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP-DVAKQLNNLAL 161 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHH
Confidence 8888888888877653 2122 3456777888888889999999988888764 3233 46677888999
Q ss_pred HHhcCCCHHHHHHHHhcCCCC-----------ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHhhHH
Q 038673 231 MYSKCGSIDDAYRIFVGMKQR-----------NVFSYSSMILGFAMHGRAHAAIQLFGDMVKT-------ETKPNGVTFI 292 (548)
Q Consensus 231 ~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~ 292 (548)
.|...|++++|...|+++.+. ...++..+...|...|++++|+..|+++.+. ...|......
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 999999999999888876531 2346788888999999999999999998763 1222222111
Q ss_pred HHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038673 293 GVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHL 370 (548)
Q Consensus 293 ~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 370 (548)
. ....+..+...+...+.+.+|...++... ..|+ ..+|..+..++...|++++|...++++
T Consensus 242 ~-----------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 242 M-----------------HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp H-----------------HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred H-----------------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1 11223334444555666666666666664 2333 567788889999999999999999999
Q ss_pred hhcCCC
Q 038673 371 FELEPD 376 (548)
Q Consensus 371 ~~~~p~ 376 (548)
+++.|.
T Consensus 305 l~l~~~ 310 (311)
T 3nf1_A 305 MRSRKQ 310 (311)
T ss_dssp HHHHC-
T ss_pred HHHhhc
Confidence 887664
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.29 E-value=9.3e-11 Score=102.97 Aligned_cols=167 Identities=16% Similarity=0.042 Sum_probs=112.6
Q ss_pred CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHH
Q 038673 184 DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMI 260 (548)
Q Consensus 184 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li 260 (548)
+...|..+...+...|++++|.+.|+++++..+. +..++..+...|.+.|++++|...+..... .+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN---NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 3445566666666666666666666666665533 666666677777777777777666665542 3445566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-
Q 038673 261 LGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP- 339 (548)
Q Consensus 261 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 339 (548)
..+...++++.|...+.+.... .|+ +...+..+...|.+.|++++|++.|++..
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~--~~~-----------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL--NTV-----------------------YADAYYKLGLVYDSMGEHDKAIEAYEKTIS 135 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--Ccc-----------------------chHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 6677777777777777776652 333 33456667777777788888887777663
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 340 VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 340 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
..|+ ..+|..+..++...|++++|...++++++++|+++
T Consensus 136 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 136 IKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred hcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 3444 66777777888888888888888888888888654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=8.8e-10 Score=105.61 Aligned_cols=215 Identities=9% Similarity=-0.073 Sum_probs=144.1
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHhh-------ccCCc-------HHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 038673 34 KDSISLYCSMRREGIGPVSFTLSALFKACT-------EVLDV-------SLGQQIHAQTILLGGFTSDLYVGNTMIGMYV 99 (548)
Q Consensus 34 ~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 99 (548)
++|+.+|++..... +-+...|..+...+. ..|++ ++|..+++..++.- .+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-CcccHHHHHHHHHHHH
Confidence 45666666666531 224445555555543 23554 56666666666621 1334556666666666
Q ss_pred HcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChh-HHHHHHHHHHHCCChhHHHHHHHHHHH
Q 038673 100 KCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKV-AWTAMVTGYVQNAKPREAIEYFERMQY 178 (548)
Q Consensus 100 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~ 178 (548)
+.|++++|..+|++..+ ....+.. .|..++..+.+.|++++|..+|++..+
T Consensus 111 ~~~~~~~A~~~~~~al~----------------------------~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 162 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLA----------------------------IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162 (308)
T ss_dssp HTTCHHHHHHHHHHHHT----------------------------SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHh----------------------------ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 66666666666554322 1112333 788888888888888888888888876
Q ss_pred CCCCCCHhhHHHHHHHH-HccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC------
Q 038673 179 AGVETDYVTLVGVISAC-AQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR------ 251 (548)
Q Consensus 179 ~g~~p~~~t~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------ 251 (548)
.. +++...|....... ...|+.++|..+|+.+++..+. +...+..++..+.+.|++++|..+|++....
T Consensus 163 ~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 163 DA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD---IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp ST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred cC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 53 23333343332222 2368999999999998887543 7888999999999999999999999887641
Q ss_pred -ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 252 -NVFSYSSMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 252 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
....|..++..+...|+.+.|..+++++.+.
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3457888898889999999999999999873
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.1e-10 Score=112.40 Aligned_cols=201 Identities=8% Similarity=-0.087 Sum_probs=134.3
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHC--CC---CC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHc----CCCCC
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYA--GV---ET-DYVTLVGVISACAQLGVIKYANWVCEIAEGS----GFGPI 219 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~---~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~p~ 219 (548)
..+|..+...|...|++++|+..+++..+. .. .| ...++..+...+...|++++|...+..+.+. +..+
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~- 221 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ- 221 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH-
Confidence 356777788888888888888888776542 11 11 1345677778888888888888888877653 2111
Q ss_pred ChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CC----hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHh
Q 038673 220 NNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----RN----VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETK-PNGV 289 (548)
Q Consensus 220 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~ 289 (548)
....++..+...|...|++++|.+.|++..+ .+ ..++..+...|...|++++|...+++..+.... ++..
T Consensus 222 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 301 (383)
T 3ulq_A 222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVI 301 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 2345788889999999999999888887654 22 346778888899999999999999887763110 0111
Q ss_pred hHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCCHHHHHH
Q 038673 290 TFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGC---LEEALKMVEKMPVEPN-GGVWGALLGACQIHRNPEIAQI 365 (548)
Q Consensus 290 t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~~~~~a~~ 365 (548)
....+..+...|...|+ +++|+.++++....|+ ...+..+...+...|+++.|..
T Consensus 302 ---------------------~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~ 360 (383)
T 3ulq_A 302 ---------------------YLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASA 360 (383)
T ss_dssp ---------------------HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 11224556677777777 7778888877753333 2344445556666666666666
Q ss_pred HHHHHhh
Q 038673 366 AANHLFE 372 (548)
Q Consensus 366 ~~~~~~~ 372 (548)
.+++..+
T Consensus 361 ~~~~al~ 367 (383)
T 3ulq_A 361 YFLKVEQ 367 (383)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666555
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=8.8e-11 Score=119.75 Aligned_cols=213 Identities=12% Similarity=-0.029 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCc-HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHc
Q 038673 34 KDSISLYCSMRREGIGPVSFTLSALFKACTEVLDV-SLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFD 112 (548)
Q Consensus 34 ~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 112 (548)
++++..++..... .+.+...+..+..++...|++ ++|...++.+++.. +.+..++..+..+|.+.|++++|...|+
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444445444332 122455556666666666666 66666666666654 4455666666666666666666666655
Q ss_pred cCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHC---------CChhHHHHHHHHHHHCCCCC
Q 038673 113 EMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQN---------AKPREAIEYFERMQYAGVET 183 (548)
Q Consensus 113 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p 183 (548)
+..+. .|+...|..+...|... |++++|+..|++..+.. +-
T Consensus 162 ~al~~-----------------------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~ 211 (474)
T 4abn_A 162 GALTH-----------------------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VL 211 (474)
T ss_dssp HHHTT-----------------------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TT
T ss_pred HHHhh-----------------------------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CC
Confidence 54320 23344555555555555 66666666666665542 22
Q ss_pred CHhhHHHHHHHHHcc--------CChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CC
Q 038673 184 DYVTLVGVISACAQL--------GVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RN 252 (548)
Q Consensus 184 ~~~t~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~ 252 (548)
+...+..+..++... |++++|...++.+.+.......+..++..+...|.+.|++++|.+.|++..+ .+
T Consensus 212 ~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 212 DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 445555566666555 6666666666666665440001566666666666667777777666666542 33
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHH
Q 038673 253 VFSYSSMILGFAMHGRAHAAIQLFGDM 279 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~l~~~m 279 (548)
...|..+...+...|++++|++.+.++
T Consensus 292 ~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 292 PEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445666666666667777766655544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.24 E-value=6.9e-10 Score=96.87 Aligned_cols=162 Identities=12% Similarity=-0.009 Sum_probs=140.4
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTA 297 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 297 (548)
....+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+. .|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~---------- 74 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APD---------- 74 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----------
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC----------
Confidence 456778888999999999999999999875 35677888999999999999999999999874 333
Q ss_pred HhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038673 298 CSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-V-EPNGGVWGALLGACQIHRNPEIAQIAANHLFELEP 375 (548)
Q Consensus 298 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 375 (548)
+...+..+...+...|++++|.+.++++. . ..+...|..+...+...|+++.|...++++.+..|
T Consensus 75 -------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 75 -------------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141 (186)
T ss_dssp -------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred -------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence 34567788889999999999999998874 2 34577888888999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 376 DKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 376 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
.++..+..++.+|...|++++|.+.+++..+.
T Consensus 142 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999988754
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.23 E-value=7.1e-09 Score=108.94 Aligned_cols=366 Identities=10% Similarity=0.042 Sum_probs=201.9
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCC---cHHHHHHHHHHHHhCCCCCChhHH
Q 038673 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD---VSLGQQIHAQTILLGGFTSDLYVG 91 (548)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~ 91 (548)
.|...|..++..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++ ++.+..+|+..+.....+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 36677888888888888888888888888874 34455566666666666677 888888888887753113777777
Q ss_pred HHHHHHHHHcCCh--------HHHHHHHccCC------CC-CeehHHHHHHHHH---------hCCChHHHHHHHccCCC
Q 038673 92 NTMIGMYVKCGFL--------GCSRKVFDEMP------ER-DVVSWTELIVAYA---------NNGDMESAGGLFNELPL 147 (548)
Q Consensus 92 ~~li~~~~~~g~~--------~~A~~~~~~m~------~~-~~~~~~~li~~~~---------~~g~~~~A~~~f~~m~~ 147 (548)
...+....+.++. +..+++|+... ++ +...|...+.-.. ..++++.+..+|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7777766555543 23345665422 22 2345666655432 23345666677666542
Q ss_pred -C--Ch-hHHH---HHHHHH----------HHCCChhHHHHHHHH-----------------------------------
Q 038673 148 -K--DK-VAWT---AMVTGY----------VQNAKPREAIEYFER----------------------------------- 175 (548)
Q Consensus 148 -~--~~-~~~~---~li~~~----------~~~g~~~~A~~l~~~----------------------------------- 175 (548)
| +. .+|. .....+ -....++.|...+.+
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 1 11 1221 111110 000111222223322
Q ss_pred --------------------------------HHHCCCCCCHhhHHHHHHHHHccCChhHHH-HHHHHHHHcCCCCCChH
Q 038673 176 --------------------------------MQYAGVETDYVTLVGVISACAQLGVIKYAN-WVCEIAEGSGFGPINNV 222 (548)
Q Consensus 176 --------------------------------m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~p~~~~ 222 (548)
.... .+-+...|.....-+...|+.+.|. ++++......+ .+.
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P---~s~ 378 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP---NSA 378 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT---TCH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC---CCH
Confidence 2211 0111222222222233344555553 55555554332 244
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHhcCCC-------------CC------------hhhhHHHHHHHHhcCCHHHHHHHHH
Q 038673 223 VVGSALIDMYSKCGSIDDAYRIFVGMKQ-------------RN------------VFSYSSMILGFAMHGRAHAAIQLFG 277 (548)
Q Consensus 223 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~l~~ 277 (548)
..+..++....+.|+++.|.++|+++.. |+ ...|...+....+.|..+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555555555555555555555432 11 1234455554455555555555555
Q ss_pred HHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHc-CCHHHHHHHHHhCC--CCCChhHHHHHHHHH
Q 038673 278 DMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRA-GCLEEALKMVEKMP--VEPNGGVWGALLGAC 354 (548)
Q Consensus 278 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~ 354 (548)
+..+.- | .+....|...+.+..+. ++.+.|..+|+..- ..-+...|...+...
T Consensus 459 ~A~~~~--~----------------------~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 459 KCRRLK--K----------------------LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHTG--G----------------------GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhc--C----------------------CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 555420 0 01123343333333344 34788888887663 223466677777777
Q ss_pred HhcCCHHHHHHHHHHHhhcCCC---CchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 355 QIHRNPEIAQIAANHLFELEPD---KIGNYIILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 355 ~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
...|+.+.|..+|++++...|+ ....|...+..-.+.|..+.+.++.+++.+.-.
T Consensus 515 ~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 7788888999999988887663 445777777777888888888888888876543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-08 Score=98.28 Aligned_cols=274 Identities=12% Similarity=-0.028 Sum_probs=181.5
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh----hHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCCh----hHHH
Q 038673 21 TALIRGYILQGHLKDSISLYCSMRREGIGPVSF----TLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDL----YVGN 92 (548)
Q Consensus 21 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ 92 (548)
......+...|++++|...+++........+.. ++..+...+...|+++.|...++..++...-..+. .+++
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455677899999999999987753111222 35555666778899999998888877642111222 2355
Q ss_pred HHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCC----ChhHHHHHHHHHHHCCChhH
Q 038673 93 TMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLK----DKVAWTAMVTGYVQNAKPRE 168 (548)
Q Consensus 93 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~ 168 (548)
.+...+...|++++|...++ ++.++......+ ....+..+...+...|++++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~------------------------~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 153 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQE------------------------KAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 153 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHH------------------------HHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH------------------------HHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHH
Confidence 66677777888888877743 333344433322 23456677888899999999
Q ss_pred HHHHHHHHHHCCCC--C--CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHH----HHHHHHhcCCCHHH
Q 038673 169 AIEYFERMQYAGVE--T--DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGS----ALIDMYSKCGSIDD 240 (548)
Q Consensus 169 A~~l~~~m~~~g~~--p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~----~li~~y~~~g~~~~ 240 (548)
|...+++.....-. + ...++..+...+...|++++|...++........+........ ..+..+...|++++
T Consensus 154 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 233 (373)
T 1hz4_A 154 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 233 (373)
T ss_dssp HHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHH
Confidence 99999887653211 1 2345667778888999999999999988764222101111111 34455889999999
Q ss_pred HHHHHhcCCCCCh-------hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCH-
Q 038673 241 AYRIFVGMKQRNV-------FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPST- 312 (548)
Q Consensus 241 A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~- 312 (548)
|...+++...++. ..+..+...+...|++++|...+++.....-.. +..++.
T Consensus 234 A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~--------------------~~~~~~~ 293 (373)
T 1hz4_A 234 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--------------------RLMSDLN 293 (373)
T ss_dssp HHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------------TCHHHHH
T ss_pred HHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--------------------cchhhHH
Confidence 9999998875322 245677788999999999999999886531100 111111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038673 313 DHYACMVDLLGRAGCLEEALKMVEKM 338 (548)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m 338 (548)
..+..+..++...|+.++|...+++.
T Consensus 294 ~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 294 RNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 24566677888889999998888765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.9e-09 Score=94.86 Aligned_cols=207 Identities=12% Similarity=0.028 Sum_probs=154.9
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHH
Q 038673 148 KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSA 227 (548)
Q Consensus 148 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 227 (548)
.|+..|......+...|++++|+..|++..+..-+++...+..+..++...|++++|...++.+.+..+. +..++..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN---LANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS---HHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc---hHHHHHH
Confidence 3567888888899999999999999999887653367777777888899999999999999999887654 8889999
Q ss_pred HHHHHhcCCCHHHHHHHHhcCCC--C-Ch-------hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038673 228 LIDMYSKCGSIDDAYRIFVGMKQ--R-NV-------FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTA 297 (548)
Q Consensus 228 li~~y~~~g~~~~A~~~~~~~~~--~-~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 297 (548)
+...|.+.|++++|...|++..+ | +. ..|..+...+...|++++|++.|++..+ +.|+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~-------- 151 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKW-------- 151 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHH--------
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcc--------
Confidence 99999999999999999988763 3 33 4577777888999999999999999887 455410
Q ss_pred HhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038673 298 CSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEP 375 (548)
Q Consensus 298 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 375 (548)
+...|..+...|...|+. +++++. ...+...+.... ....+.+++|...+++++++.|
T Consensus 152 -------------~~~~~~~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 152 -------------KTDALYSLGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp -------------HHHHHHHHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT
T ss_pred -------------cHHHHHHHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC
Confidence 123466666666655543 222221 122344444433 3345668999999999999999
Q ss_pred CCchhHHHHHHH
Q 038673 376 DKIGNYIILSNI 387 (548)
Q Consensus 376 ~~~~~~~~l~~~ 387 (548)
+++.+...+..+
T Consensus 212 ~~~~~~~~l~~i 223 (228)
T 4i17_A 212 NRTEIKQMQDQV 223 (228)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 998776666554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.1e-09 Score=103.03 Aligned_cols=234 Identities=9% Similarity=-0.076 Sum_probs=167.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCC-CCC----hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCC-----ChhHHH
Q 038673 23 LIRGYILQGHLKDSISLYCSMRREGI-GPV----SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTS-----DLYVGN 92 (548)
Q Consensus 23 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ 92 (548)
....+...|++++|+..|++....-. .|| ..++..+...+...|+++.|...+...++...-.+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44556778999999999988876310 122 34677777888888888888888888776521111 134666
Q ss_pred HHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCC--ChhHHHHHHHHHHHCCChhHHH
Q 038673 93 TMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLK--DKVAWTAMVTGYVQNAKPREAI 170 (548)
Q Consensus 93 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~ 170 (548)
.+...|...|++++|...|+ +|++++.....+ ...+++.+...|...|++++|+
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~------------------------~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 244 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQ------------------------KAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAI 244 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHH------------------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHH------------------------HHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 77777777777777777743 334444433222 1347888889999999999999
Q ss_pred HHHHHHHHC----CC-CCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCC---CCCChHhHHHHHHHHHhcCCC---HH
Q 038673 171 EYFERMQYA----GV-ETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGF---GPINNVVVGSALIDMYSKCGS---ID 239 (548)
Q Consensus 171 ~l~~~m~~~----g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~p~~~~~~~~~li~~y~~~g~---~~ 239 (548)
..|++..+. +. +....++..+...+...|++++|...++...+... .| .....+..+...|...|+ ++
T Consensus 245 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~ 323 (383)
T 3ulq_A 245 PYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDV-IYLSEFEFLKSLYLSGPDEEAIQ 323 (383)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHTSSCCHHHHH
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhCCCcHHHHH
Confidence 999887662 33 33455678888889999999999999988765421 11 234446778999999999 89
Q ss_pred HHHHHHhcCCCC--ChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 240 DAYRIFVGMKQR--NVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 240 ~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
+|..++++.... ....+..+...|...|++++|...|++..+
T Consensus 324 ~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 324 GFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999988542 234677888899999999999999998876
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.1e-09 Score=91.85 Aligned_cols=157 Identities=15% Similarity=0.045 Sum_probs=112.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 038673 122 WTELIVAYANNGDMESAGGLFNELPL---KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQL 198 (548)
Q Consensus 122 ~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 198 (548)
|..+...+...|++++|...|+++.. .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 33344445555555555555555442 245667777777888888888888888776653 34566677777778888
Q ss_pred CChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHH
Q 038673 199 GVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQL 275 (548)
Q Consensus 199 g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 275 (548)
|++++|.+.++.+.+.... +..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|...
T Consensus 90 ~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANPI---NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcH---hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888888776543 677788888888888888888888877653 3556788888888888888888888
Q ss_pred HHHHHHc
Q 038673 276 FGDMVKT 282 (548)
Q Consensus 276 ~~~m~~~ 282 (548)
+++..+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8887763
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.3e-09 Score=101.52 Aligned_cols=223 Identities=9% Similarity=-0.001 Sum_probs=149.8
Q ss_pred HHhCCChHHHHHHHccCCC-----C----ChhHHHHHHHHHHHCCChhHHHHHHHHHHHC----C-CCC-CHhhHHHHHH
Q 038673 129 YANNGDMESAGGLFNELPL-----K----DKVAWTAMVTGYVQNAKPREAIEYFERMQYA----G-VET-DYVTLVGVIS 193 (548)
Q Consensus 129 ~~~~g~~~~A~~~f~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~p-~~~t~~~ll~ 193 (548)
+...|++++|...|++... + ...++..+...|...|++++|+..+++.... + ..+ ...++..+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 3445555555555544321 1 2456778888888899999988888876542 1 111 2346677888
Q ss_pred HHHccCChhHHHHHHHHHHHc----CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CC---hhhhHHHHH
Q 038673 194 ACAQLGVIKYANWVCEIAEGS----GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----RN---VFSYSSMIL 261 (548)
Q Consensus 194 ~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~---~~~~~~li~ 261 (548)
.+...|++++|...+..+.+. +..+ ....++..+...|...|++++|...|++..+ .+ ..++..+..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDR-FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 888999999999988887653 2221 2356788899999999999999999987764 22 456777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCC---HHHHHHHHHhC
Q 038673 262 GFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGC---LEEALKMVEKM 338 (548)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m 338 (548)
.|...|++++|...+++..+.....+... ....+..+...+...|+ +++|+..+++.
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~ 329 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKF--------------------YKELFLFLQAVYKETVDERKIHDLLSYFEKK 329 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSC--------------------HHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHH--------------------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC
Confidence 99999999999999999887432211111 12235556666777777 88888888876
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038673 339 PVEPN-GGVWGALLGACQIHRNPEIAQIAANHLFE 372 (548)
Q Consensus 339 ~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 372 (548)
...|+ ...+..+...+...|+++.|...++++.+
T Consensus 330 ~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 330 NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 53333 23444455666777777777777666654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-08 Score=99.62 Aligned_cols=235 Identities=14% Similarity=0.057 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCCH----hhHHHHHHHHHccCChhHHHHHHHHHHHc----CCC--CCC
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGV-ETDY----VTLVGVISACAQLGVIKYANWVCEIAEGS----GFG--PIN 220 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~--p~~ 220 (548)
+++.+...+...|++++|...+++.....- .++. .++..+...+...|++++|...++...+. +.. | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~-~ 133 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP-M 133 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST-H
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCc-H
Confidence 456666777888888888888887654210 1121 23455667778889999998888877653 221 2 3
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--C------ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-hH
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--R------NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGV-TF 291 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~ 291 (548)
...++..+...|...|++++|...+++..+ + ...+|..+...+...|++++|...+++.....-.++.. .+
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~ 213 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 213 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhH
Confidence 456677788889999999999998887542 1 12457778888999999999999999987642222211 10
Q ss_pred HHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-----hhHHHHHHHHHHhcCCHHHHHH
Q 038673 292 IGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-----GGVWGALLGACQIHRNPEIAQI 365 (548)
Q Consensus 292 ~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~~~~~~~~~~~a~~ 365 (548)
.. ......+..+...|++++|...+++.. ..|. ...+..+...+...|++++|..
T Consensus 214 ~~-------------------~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 274 (373)
T 1hz4_A 214 IS-------------------NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEI 274 (373)
T ss_dssp HH-------------------HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HH-------------------HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 00 011134455778999999999999885 2222 2245566688899999999999
Q ss_pred HHHHHhhcCCC-----C-chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 366 AANHLFELEPD-----K-IGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 366 ~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
.++.+.+..+. . ...+..++.+|...|+.++|...+++..+
T Consensus 275 ~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 275 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99998874322 1 23677889999999999999999988764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-09 Score=102.74 Aligned_cols=201 Identities=11% Similarity=0.038 Sum_probs=130.0
Q ss_pred HhhHHHHHHHHHccCChhHHHHHHHHHHHc------CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-------C
Q 038673 185 YVTLVGVISACAQLGVIKYANWVCEIAEGS------GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-------R 251 (548)
Q Consensus 185 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~ 251 (548)
..++..+...+...|++++|...+..+.+. +..| ....++..+...|...|++++|...|++..+ +
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP-AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH-HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 445566666667777777777777766544 2222 4566777777788888888888777776542 1
Q ss_pred ----ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHH
Q 038673 252 ----NVFSYSSMILGFAMHGRAHAAIQLFGDMVKT---ETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGR 324 (548)
Q Consensus 252 ----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~ 324 (548)
...+|..+...|...|++++|+..|++..+. ...|+.. ....++..+...|.+
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------------------~~~~~~~~la~~~~~ 181 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP--------------------NVAKTKNNLASCYLK 181 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH--------------------HHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH--------------------HHHHHHHHHHHHHHH
Confidence 2356777888888889999999988888763 0111111 123568888999999
Q ss_pred cCCHHHHHHHHHhCC----------CCCC-hhHHHHHHHHHHhcCC------HHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 038673 325 AGCLEEALKMVEKMP----------VEPN-GGVWGALLGACQIHRN------PEIAQIAANHLFELEPDKIGNYIILSNI 387 (548)
Q Consensus 325 ~g~~~~A~~~~~~m~----------~~p~-~~~~~~ll~~~~~~~~------~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 387 (548)
.|++++|.+.+++.. ..|. ...|..+.......+. +..+...++......|....++..++.+
T Consensus 182 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 261 (283)
T 3edt_B 182 QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGAL 261 (283)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999999999998762 2333 3334433333333332 3333333333333445566789999999
Q ss_pred HHHcCCchHHHHHHHHHHh
Q 038673 388 YASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 388 ~~~~g~~~~a~~~~~~m~~ 406 (548)
|...|++++|.+++++..+
T Consensus 262 ~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 262 YRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.8e-09 Score=113.29 Aligned_cols=161 Identities=13% Similarity=0.034 Sum_probs=123.7
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSAL 228 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 228 (548)
+..+|+.|...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|.+.|+++++.... +..++..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~---~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT---FADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Confidence 45678888888888888888888888877652 234667778888888888888888888888877644 77888888
Q ss_pred HHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCcc
Q 038673 229 IDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKC 305 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 305 (548)
..+|.+.|++++|.+.|++..+ .+...|+.+...|...|++++|++.|++.++ +.|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~------------------ 143 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPD------------------ 143 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSC------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC------------------
Confidence 8888888888888888887653 4567788888888888888888888888877 4555
Q ss_pred CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038673 306 YGVSPSTDHYACMVDLLGRAGCLEEALKMVEKM 338 (548)
Q Consensus 306 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 338 (548)
+...|..+..+|...|++++|.+.+++.
T Consensus 144 -----~~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 144 -----FPDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp -----CHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred -----ChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 3355777788888888888877776654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.04 E-value=4e-08 Score=96.96 Aligned_cols=232 Identities=12% Similarity=-0.006 Sum_probs=166.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCC-CCC----hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCC-----ChhHHHH
Q 038673 24 IRGYILQGHLKDSISLYCSMRREGI-GPV----SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTS-----DLYVGNT 93 (548)
Q Consensus 24 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ 93 (548)
...+...|++++|+..|++...... .++ ..++..+...+...|+++.|...+...++...-.+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445678888888888888775311 122 34567777778888888888888887776420111 1345667
Q ss_pred HHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCC--ChhHHHHHHHHHHHCCChhHHHH
Q 038673 94 MIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLK--DKVAWTAMVTGYVQNAKPREAIE 171 (548)
Q Consensus 94 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~ 171 (548)
+..+|...|++++|.+.|+ +|++++.....+ ...+++.+...|...|++++|+.
T Consensus 188 lg~~y~~~~~~~~A~~~~~------------------------~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~ 243 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLE------------------------AALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE 243 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHH------------------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHH------------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 7777777778777777743 334444443322 23578888899999999999999
Q ss_pred HHHHHHH-----CCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC---CCChHhHHHHHHHHHhcCCC---HHH
Q 038673 172 YFERMQY-----AGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFG---PINNVVVGSALIDMYSKCGS---IDD 240 (548)
Q Consensus 172 l~~~m~~-----~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---p~~~~~~~~~li~~y~~~g~---~~~ 240 (548)
.|++... .. +....++..+...+.+.|++++|...++...+.... | .....+..+...|...|+ +++
T Consensus 244 ~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~l~~ly~~~~~~~~~~~ 321 (378)
T 3q15_A 244 HFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHK-FYKELFLFLQAVYKETVDERKIHD 321 (378)
T ss_dssp HHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCS-CHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhCCCcHHHHHH
Confidence 9988876 32 233567788888999999999999999998875321 2 345667888888889998 889
Q ss_pred HHHHHhcCCCC--ChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 241 AYRIFVGMKQR--NVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 241 A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
|...+++.... ....+..+...|...|++++|...|++..+
T Consensus 322 al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 322 LLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999886532 224566788899999999999999998865
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.5e-09 Score=95.06 Aligned_cols=198 Identities=11% Similarity=-0.070 Sum_probs=127.4
Q ss_pred CCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHH
Q 038673 183 TDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSM 259 (548)
Q Consensus 183 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 259 (548)
.|...+......+...|++++|...++.+++....+ +...+..+...|.+.|++++|.+.|++..+ .+...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ--DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC--CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 345667777777788888888888888888776532 555666678888888888888888877653 244567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 260 ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 260 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
...|...|++++|+..|++..+. .|+...+ ...-...|..+...+...|++++|.+.|++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~----------------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA--VPGNATI----------------EKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHH----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHHHHHHH--CCCcHHH----------------HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 77888888888888888887762 3331110 00001446666677777788888887777664
Q ss_pred -CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 340 -VEPN---GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 340 -~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
..|+ ...|..+..++. ..+...++++..+.+.++..|..+. ....|.+++|...+++..+.
T Consensus 145 ~~~p~~~~~~~~~~l~~~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 145 DVTSKKWKTDALYSLGVLFY-----NNGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp TSSCHHHHHHHHHHHHHHHH-----HHHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCcccHHHHHHHHHHHH-----HHHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 4554 334444444443 3445556666666665544444332 33445679999999888653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-08 Score=95.41 Aligned_cols=229 Identities=10% Similarity=-0.032 Sum_probs=148.0
Q ss_pred HhCCCchHHHHHHHHHHHC-------CCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHh------CCCCCChhHHHHH
Q 038673 28 ILQGHLKDSISLYCSMRRE-------GIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILL------GGFTSDLYVGNTM 94 (548)
Q Consensus 28 ~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l 94 (548)
...|++++|+..|++..+. ..+....++..+...+...|++++|...++.+++. +..+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567788888777776652 11124556788888888999999999999888775 2112345678888
Q ss_pred HHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCC----CChhHHHHHHHHHHHCCChhHHH
Q 038673 95 IGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPL----KDKVAWTAMVTGYVQNAKPREAI 170 (548)
Q Consensus 95 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~ 170 (548)
...|...|++++|...|++. .+++.+... ....+|..+...|...|++++|+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 147 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRA------------------------LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE 147 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------------------------HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHH------------------------HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888886443 333322211 13456777888888888888888
Q ss_pred HHHHHHHHC------CCCC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHc-------CCCCCChHhHHHHHHHHHhcC-
Q 038673 171 EYFERMQYA------GVET-DYVTLVGVISACAQLGVIKYANWVCEIAEGS-------GFGPINNVVVGSALIDMYSKC- 235 (548)
Q Consensus 171 ~l~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~p~~~~~~~~~li~~y~~~- 235 (548)
..|++..+. +-.| ...++..+...+...|++++|...++.+.+. ...| .....+..+...+...
T Consensus 148 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 226 (283)
T 3edt_B 148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNG-DNKPIWMHAEEREESKD 226 (283)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCS-SCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHhcCC
Confidence 888877653 1122 3456777888888888888888888887753 1122 2344444444444432
Q ss_pred -----CCHHHHHHHHhcCCCC---ChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 236 -----GSIDDAYRIFVGMKQR---NVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 236 -----g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
..+..+...+...... ...++..+...|...|++++|..+|++..+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 227 KRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2345555555555533 235688888999999999999999998775
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-07 Score=96.54 Aligned_cols=360 Identities=9% Similarity=-0.033 Sum_probs=224.8
Q ss_pred CchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC---hHHHH
Q 038673 32 HLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGF---LGCSR 108 (548)
Q Consensus 32 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~ 108 (548)
...+.+..|++.+... +-|..+|..++..+...+.++.+..+++.++.. +|.....|...+..-.+.|. ++.+.
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 3555666667666653 348889999999999999999999999999998 68889999999999999999 99999
Q ss_pred HHHccCCC-----CCeehHHHHHHHHHhCCCh--------HHHHHHHccC-------CCCChhHHHHHHHHHH-------
Q 038673 109 KVFDEMPE-----RDVVSWTELIVAYANNGDM--------ESAGGLFNEL-------PLKDKVAWTAMVTGYV------- 161 (548)
Q Consensus 109 ~~~~~m~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~f~~m-------~~~~~~~~~~li~~~~------- 161 (548)
.+|++... |++..|..-+.-..+.++. +...++|+.. ...+...|...+....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 99998764 6777888777655554443 2334566642 2224567888776543
Q ss_pred --HCCChhHHHHHHHHHHHCCCCCCHhhH---HHHHHHHHc----------cCChhHH----------------------
Q 038673 162 --QNAKPREAIEYFERMQYAGVETDYVTL---VGVISACAQ----------LGVIKYA---------------------- 204 (548)
Q Consensus 162 --~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~~~~~----------~g~~~~a---------------------- 204 (548)
.+++.+.+..+|++........-..+| ..+...... ...++.|
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 234567788888887742111111122 111111000 0011111
Q ss_pred ---------------------------------------------HHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHH
Q 038673 205 ---------------------------------------------NWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSID 239 (548)
Q Consensus 205 ---------------------------------------------~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~ 239 (548)
..+|++++...+ ....+|...+..+.+.|+.+
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p---~~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC---FAPEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHSCCT
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHhcCcHH
Confidence 223333333221 24444445555555556666
Q ss_pred HHH-HHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CCCHhhHHHHHHHHhhcCCccC
Q 038673 240 DAY-RIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTET---------KPNGVTFIGVLTACSHVGLKCY 306 (548)
Q Consensus 240 ~A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~~~t~~~ll~a~~~~~~~~~ 306 (548)
+|. ++|++... .+...|-..+...-..|+.++|.++|++++.... .|+..+ -+..+..
T Consensus 361 ~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~---~~~~~~~------ 431 (679)
T 4e6h_A 361 TVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES---AINQLKS------ 431 (679)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH---HHHHHHH------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh---hhhhhcc------
Confidence 664 66665542 2334455566666666677777777666654210 011000 0000000
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-C--ChhHHHHHHHHHHh-cCCHHHHHHHHHHHhhcCCCCchhHH
Q 038673 307 GVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVE-P--NGGVWGALLGACQI-HRNPEIAQIAANHLFELEPDKIGNYI 382 (548)
Q Consensus 307 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p--~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~ 382 (548)
-....|...+....+.|..+.|..+|.+.... | ....|......-.+ .++.+.|..+|+.+++..|+++..+.
T Consensus 432 ---~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~ 508 (679)
T 4e6h_A 432 ---KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYIN 508 (679)
T ss_dssp ---HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHH
Confidence 01346888888888999999999999887422 2 23334322222223 45689999999999999999988888
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 383 ILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 383 ~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
..+......|+.+.|..+|++......
T Consensus 509 ~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 509 KYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 899989999999999999999876554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-08 Score=95.49 Aligned_cols=211 Identities=9% Similarity=-0.051 Sum_probs=142.0
Q ss_pred CchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHh----CCCCCC-hhHHHHHHHHHHHcCChHH
Q 038673 32 HLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILL----GGFTSD-LYVGNTMIGMYVKCGFLGC 106 (548)
Q Consensus 32 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~g~~~~ 106 (548)
++++|.+.|++. ...+...|++++|...+...++. | .+++ ..+++.+..+|.+.|++++
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAG-NEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHCCCHHH
Confidence 478888888776 33566789999999988888764 2 1222 4578888888888889988
Q ss_pred HHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHC-CChhHHHHHHHHHHHCC----C
Q 038673 107 SRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQN-AKPREAIEYFERMQYAG----V 181 (548)
Q Consensus 107 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g----~ 181 (548)
|...|++. +..+...|+...+ ..+|+.+...|... |++++|+..|++..... -
T Consensus 96 A~~~~~~A-----------l~l~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 96 AVDSLENA-----------IQIFTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp HHHHHHHH-----------HHHHHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHH-----------HHHHHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence 88885432 2222233332222 34677788888886 88888888888776531 1
Q ss_pred CCC-HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChH-----hHHHHHHHHHhcCCCHHHHHHHHhcCCCCChh-
Q 038673 182 ETD-YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNV-----VVGSALIDMYSKCGSIDDAYRIFVGMKQRNVF- 254 (548)
Q Consensus 182 ~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-----~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~- 254 (548)
.+. ..++..+...+...|++++|...++.+.+..... ... ..+..+..+|...|++++|...|++..+-++.
T Consensus 154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN-RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC-TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC-CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 101 3457778888888899999999998888866542 111 25677788888899999999999887652221
Q ss_pred -------hhHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 038673 255 -------SYSSMILGFA--MHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 255 -------~~~~li~~~~--~~g~~~~A~~l~~~m~~ 281 (548)
.+..++.+|. ..+++++|+..|+++..
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 2334555554 34668888888876544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.8e-09 Score=91.31 Aligned_cols=141 Identities=8% Similarity=-0.009 Sum_probs=113.7
Q ss_pred HHHHHhcCCCHHHHHHHHhcCCCC---ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCc
Q 038673 228 LIDMYSKCGSIDDAYRIFVGMKQR---NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLK 304 (548)
Q Consensus 228 li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 304 (548)
|..++...|++++|...+...... +...+..+...|...|++++|++.|++.++ +.|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~----------------- 63 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQER----------------- 63 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT-----------------
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC-----------------
Confidence 556777788899999999887753 345677788899999999999999999988 4555
Q ss_pred cCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHH-HHHHHhhcCCCCchhH
Q 038673 305 CYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQI-AANHLFELEPDKIGNY 381 (548)
Q Consensus 305 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~ 381 (548)
+...|..+..+|.+.|++++|...|++.. +.|+ ...|..+...+...|+.++|.+ .++++++++|+++.+|
T Consensus 64 ------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~ 137 (150)
T 4ga2_A 64 ------DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVY 137 (150)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHH
T ss_pred ------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHH
Confidence 44678889999999999999999998874 5665 7788888889999999876555 5699999999999999
Q ss_pred HHHHHHHHHcCC
Q 038673 382 IILSNIYASAGM 393 (548)
Q Consensus 382 ~~l~~~~~~~g~ 393 (548)
.....++...|+
T Consensus 138 ~l~~~ll~~~G~ 149 (150)
T 4ga2_A 138 KLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHhCc
Confidence 999888888775
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.96 E-value=6.2e-08 Score=90.66 Aligned_cols=181 Identities=13% Similarity=0.041 Sum_probs=131.8
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcC
Q 038673 169 AIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGM 248 (548)
Q Consensus 169 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 248 (548)
|+..|++....+ .++..++..+..++...|++++|.+++...+..+..+ .+...+..++..|.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~-~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAE-GTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCST-THHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc-CcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777888777655 5566666678888888999999999999887777522 48888899999999999999999999888
Q ss_pred CCCC-------hhhhHHHHHH--HHhcC--CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHH
Q 038673 249 KQRN-------VFSYSSMILG--FAMHG--RAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYAC 317 (548)
Q Consensus 249 ~~~~-------~~~~~~li~~--~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~ 317 (548)
.+.+ -.+...++.+ ....| ++.+|..+|+++.+. .|+. .+...
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~------------------------~~~~l 216 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTW------------------------KTQLG 216 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSH------------------------HHHHH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCc------------------------ccHHH
Confidence 7432 3455556655 33334 899999999998763 3331 11223
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-C----------CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 318 MVDLLGRAGCLEEALKMVEKMP-V----------EPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 318 li~~~~~~g~~~~A~~~~~~m~-~----------~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
+..++.+.|++++|.+.++.+. . .|+ +.+...++......|+ .|.++++++.+..|+++.
T Consensus 217 Lln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 217 LLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 3337888899999999987652 1 244 6666566656666676 788999999999999873
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.2e-08 Score=80.92 Aligned_cols=129 Identities=17% Similarity=0.246 Sum_probs=111.1
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALK 333 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 333 (548)
..|..+...+...|++++|+.+|+++.+. .|+ +...+..+...+...|++++|..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------------------~~~~~~~~a~~~~~~~~~~~A~~ 56 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPR-----------------------SAEAWYNLGNAYYKQGDYDEAIE 56 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCc-----------------------chhHHHHHHHHHHHhcCHHHHHH
Confidence 35778888999999999999999999874 232 33457778889999999999999
Q ss_pred HHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 334 MVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 334 ~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
.++++. ..| +...|..+...+...|+++.|...++++.+..|.++..+..++.+|...|++++|.+.++++.+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 57 YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 998874 333 57788888899999999999999999999999999989999999999999999999999988754
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.88 E-value=4.8e-08 Score=79.83 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDM 231 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~ 231 (548)
.|..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|...++.+.+.... +...+..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC---chHHHHHHHHH
Confidence 56777888888888999998888887653 345667777888888888999999999888877644 67788888889
Q ss_pred HhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 232 YSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 232 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
|.+.|++++|.+.|+++.+ .+...|..+...+...|++++|...|+++...
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999998887753 45677888888899999999999999988763
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.8e-08 Score=90.29 Aligned_cols=189 Identities=11% Similarity=-0.010 Sum_probs=144.5
Q ss_pred ChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-C---hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 038673 220 NNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--R-N---VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIG 293 (548)
Q Consensus 220 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 293 (548)
.+...+..+...+.+.|++++|...|+++.+ | + ...+..+..+|...|++++|+..|++..+. .|+...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~--- 87 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPR--- 87 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTT---
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCch---
Confidence 4677788888889999999999999998874 3 3 456778888999999999999999999884 343211
Q ss_pred HHHHHhhcCCccCCCCcCHHHHHHHHHHHHH--------cCCHHHHHHHHHhCC-CCCC-hhHH----------------
Q 038673 294 VLTACSHVGLKCYGVSPSTDHYACMVDLLGR--------AGCLEEALKMVEKMP-VEPN-GGVW---------------- 347 (548)
Q Consensus 294 ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~--------~g~~~~A~~~~~~m~-~~p~-~~~~---------------- 347 (548)
....+..+..++.. .|++++|...|++.. ..|+ ...+
T Consensus 88 -----------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~ 150 (261)
T 3qky_A 88 -----------------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARK 150 (261)
T ss_dssp -----------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred -----------------hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHH
Confidence 12446667777888 999999999998874 3454 3344
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc---hhHHHHHHHHHHc----------CCchHHHHHHHHHHhCCCccCC
Q 038673 348 -GALLGACQIHRNPEIAQIAANHLFELEPDKI---GNYIILSNIYASA----------GMWDDVSRVRRLLKMTGLKKNP 413 (548)
Q Consensus 348 -~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~ 413 (548)
..+...+...|+++.|...++++++..|+++ ..+..++.+|... |++++|...++++.+...
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---- 226 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---- 226 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----
Confidence 3445778999999999999999999999854 5788899999877 889999999998865321
Q ss_pred ceeEEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHH
Q 038673 414 GYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQA 454 (548)
Q Consensus 414 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 454 (548)
.++...++...+.++...+.+
T Consensus 227 --------------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 --------------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CChHHHHHHHHHHHHHHHHHH
Confidence 234556676677777666654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-07 Score=89.09 Aligned_cols=236 Identities=10% Similarity=-0.043 Sum_probs=158.9
Q ss_pred hCCChHHHHHHHccCCCCC-hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHH
Q 038673 131 NNGDMESAGGLFNELPLKD-KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCE 209 (548)
Q Consensus 131 ~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 209 (548)
-.|.+..++.-...+...+ ...-.-+.++|...|++... ..-.|....+..+. .|...+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc----HHHHHH
Confidence 4455555555444443222 22333345777777777642 11233333333333 233322 566777
Q ss_pred HHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC-----ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 038673 210 IAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR-----NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTET 284 (548)
Q Consensus 210 ~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 284 (548)
.....+.. +..+...+..+|...|++++|.+++.+.... +...+-.++..+.+.|+.+.|.+.+++|.+ .
T Consensus 91 ~l~~~~~~---~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 91 NLLKDKQN---SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HTTTTSCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHhcCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 66665522 4555568999999999999999999987432 456777888999999999999999999987 4
Q ss_pred CCC-----HhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcC
Q 038673 285 KPN-----GVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPNGGVWGALLGACQIHR 358 (548)
Q Consensus 285 ~p~-----~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~ 358 (548)
.|| ..+...+..+ .+......++..+|..+|+++. ..|+..+-..++.++.+.|
T Consensus 166 ~~d~~~~~d~~l~~Laea--------------------~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g 225 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAES--------------------YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQR 225 (310)
T ss_dssp SCHHHHHHHHHHHHHHHH--------------------HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHT
T ss_pred CccccccchHHHHHHHHH--------------------HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcC
Confidence 562 3333222222 2223333448999999999985 3355344455666899999
Q ss_pred CHHHHHHHHHHHhhc----------CCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 359 NPEIAQIAANHLFEL----------EPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 359 ~~~~a~~~~~~~~~~----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
++++|+..++.+.+. +|+++.++..++......|+ +|.++++++++.
T Consensus 226 ~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 226 NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 999999999988876 58899888888888888887 889999998764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=2.7e-07 Score=87.33 Aligned_cols=213 Identities=8% Similarity=-0.023 Sum_probs=145.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCCC-hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCC----hh
Q 038673 19 LWTALIRGYILQGHLKDSISLYCSMRRE----GIGPV-SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSD----LY 89 (548)
Q Consensus 19 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 89 (548)
.|+.....|...|++++|++.|++..+. |-+++ ..+|+.+...+...|++++|...++..++...-..+ ..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5777788899999999999999988763 32222 467889999999999999999999988774200011 34
Q ss_pred HHHHHHHHHHHc-CChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCC--ChhHHHHHHHHHHHCCCh
Q 038673 90 VGNTMIGMYVKC-GFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLK--DKVAWTAMVTGYVQNAKP 166 (548)
Q Consensus 90 ~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~ 166 (548)
+++.+..+|... |++++|...|++ |++++.....+ ...+|+.+...|.+.|++
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~------------------------Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYEL------------------------AGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH------------------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH------------------------HHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 566677777774 777777776433 33333322111 134678888899999999
Q ss_pred hHHHHHHHHHHHCCCCCCHh------hHHHHHHHHHccCChhHHHHHHHHHHHcCCCC--CChHhHHHHHHHHHh--cCC
Q 038673 167 REAIEYFERMQYAGVETDYV------TLVGVISACAQLGVIKYANWVCEIAEGSGFGP--INNVVVGSALIDMYS--KCG 236 (548)
Q Consensus 167 ~~A~~l~~~m~~~g~~p~~~------t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~~~li~~y~--~~g 236 (548)
++|+..|++........... .+..+..++...|++++|...++...+..+.- ......+..++..|. ..+
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999999988754322211 45667778888999999999999887644321 001223455666665 567
Q ss_pred CHHHHHHHHhcCCCCChhh
Q 038673 237 SIDDAYRIFVGMKQRNVFS 255 (548)
Q Consensus 237 ~~~~A~~~~~~~~~~~~~~ 255 (548)
++++|.+.|+.+...++..
T Consensus 255 ~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp THHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHhccCCccHHHH
Confidence 8999999999998766543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.84 E-value=9.5e-09 Score=109.54 Aligned_cols=169 Identities=11% Similarity=-0.041 Sum_probs=109.0
Q ss_pred HccCChhHHHHHHHHHH--------HcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHH
Q 038673 196 AQLGVIKYANWVCEIAE--------GSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFA 264 (548)
Q Consensus 196 ~~~g~~~~a~~~~~~~~--------~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 264 (548)
...|++++|.+.++.+. +.. | .+...+..+...|.+.|++++|.+.|+++.+ .+...|..+...|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--S-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--T-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--c-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 55667777777777766 333 3 3566677777777777777777777776653 35556666777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC
Q 038673 265 MHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN 343 (548)
Q Consensus 265 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~ 343 (548)
..|++++|+..|++..+ +.|+ +...|..+..+|.+.|++++ ++.|++.- ..|+
T Consensus 479 ~~g~~~~A~~~~~~al~--l~P~-----------------------~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~ 532 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLD--TFPG-----------------------ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG 532 (681)
T ss_dssp HHTCHHHHHHHHHHHHH--HSTT-----------------------CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT
T ss_pred HcCCHHHHHHHHHHHHH--hCCC-----------------------ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc
Confidence 77777777777777766 3343 23446666666777777777 66666552 3443
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 038673 344 -GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGM 393 (548)
Q Consensus 344 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 393 (548)
...|..+..++...|++++|...++++++++|++..++..++.+|...|+
T Consensus 533 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 533 VISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 55666666777777777777777777777777777677777777655544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-07 Score=100.23 Aligned_cols=190 Identities=11% Similarity=0.003 Sum_probs=150.3
Q ss_pred HHCCChhHHHHHHHHHH--------HCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH
Q 038673 161 VQNAKPREAIEYFERMQ--------YAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMY 232 (548)
Q Consensus 161 ~~~g~~~~A~~l~~~m~--------~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y 232 (548)
...|++++|++.|++.. +.. +.+...+..+..++...|++++|...++.+.+.... +...+..+...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW---RWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC---CHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc---hHHHHHHHHHHH
Confidence 78899999999999987 321 334567788888999999999999999999988755 889999999999
Q ss_pred hcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCC
Q 038673 233 SKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVS 309 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 309 (548)
.+.|++++|.+.|++..+ .+...|..+...|...|++++ ++.|++..+ +.|+
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~---------------------- 532 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDG---------------------- 532 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTT----------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCc----------------------
Confidence 999999999999998763 466789999999999999999 999999988 3455
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCC-----HHHHHHHHHHHhhcCCCCchh
Q 038673 310 PSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRN-----PEIAQIAANHLFELEPDKIGN 380 (548)
Q Consensus 310 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~~ 380 (548)
+...|..+..+|.+.|++++|.+.|++.. ..|+ ...|..+..++...++ .+...++.+.+.++.+..+..
T Consensus 533 -~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 533 -VISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 34568889999999999999999999986 6677 5667666677666555 344555555555555555543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.80 E-value=4e-08 Score=91.38 Aligned_cols=213 Identities=14% Similarity=-0.034 Sum_probs=114.0
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD---YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVG 225 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 225 (548)
+...+-.+...+.+.|++++|+..|+++.+.. +-+ ...+..+..++...|++++|...++.+++..+.......++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44555555556666666666666666665432 111 33444455555555555555555555555432200123333
Q ss_pred HHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCcc
Q 038673 226 SALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKC 305 (548)
Q Consensus 226 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 305 (548)
..+..+|.+.+. + .+...|++++|+..|++.++. .|+.......+.......
T Consensus 93 ~~lg~~~~~~~~--------------~---------~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~--- 144 (261)
T 3qky_A 93 YERAMCYYKLSP--------------P---------YELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELR--- 144 (261)
T ss_dssp HHHHHHHHHHCC--------------C---------TTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhcc--------------c---------ccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHH---
Confidence 333333333100 0 000066777777777777663 343221110000000000
Q ss_pred CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC----hhHHHHHHHHHHhc----------CCHHHHHHHHHHH
Q 038673 306 YGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN----GGVWGALLGACQIH----------RNPEIAQIAANHL 370 (548)
Q Consensus 306 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~----------~~~~~a~~~~~~~ 370 (548)
.-....+..+...|.+.|++++|...|++.. ..|+ ...+..+..++... |++++|...++++
T Consensus 145 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~ 221 (261)
T 3qky_A 145 ---AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL 221 (261)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence 0001224567788999999999999998873 3344 34566666777655 8899999999999
Q ss_pred hhcCCCCch---hHHHHHHHHHHcCC
Q 038673 371 FELEPDKIG---NYIILSNIYASAGM 393 (548)
Q Consensus 371 ~~~~p~~~~---~~~~l~~~~~~~g~ 393 (548)
++..|+++. +...+..++.+.|+
T Consensus 222 ~~~~p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 222 LQIFPDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp HHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCChHHHHHHHHHHHHHHHHHH
Confidence 999999863 33344444444333
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-07 Score=84.48 Aligned_cols=178 Identities=12% Similarity=0.080 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVT-LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALID 230 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~ 230 (548)
.+-.....+.+.|++++|+..|++..+. .|+... +.. . ... .... ......+.+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~----~~~--------------~~~~--~~~~~~~~lg~ 62 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T----NVD--------------KNSE--ISSKLATELAL 62 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H----HSC--------------TTSH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h----hhc--------------chhh--hhHHHHHHHHH
Confidence 3344445666777777777777776654 343221 111 0 000 0000 12333445888
Q ss_pred HHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCC
Q 038673 231 MYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG 307 (548)
Q Consensus 231 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 307 (548)
.|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++.++ +.|+
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~-------------------- 120 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEAD-------------------- 120 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTT--------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCC--------------------
Confidence 88999999999999988763 4667888888999999999999999999988 4555
Q ss_pred CCcCHHHHHHHHHHHHHcCC--HHHHHHHHHhCCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 308 VSPSTDHYACMVDLLGRAGC--LEEALKMVEKMPVEPNGG--VWGALLGACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 308 ~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
+...|..+...|...|. .+.+...++... .|+.. .+..+-.++...|++++|...+++++++.|++.
T Consensus 121 ---~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 121 ---NLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred ---CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 34456777777655543 445666666654 45543 333344556678899999999999999999743
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=3.3e-07 Score=86.49 Aligned_cols=158 Identities=13% Similarity=-0.024 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--CChhhhHHH-HHH
Q 038673 186 VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--RNVFSYSSM-ILG 262 (548)
Q Consensus 186 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~ 262 (548)
..+..+...+...|++++|...++.+.+..+. +...+..+...|.+.|++++|...++++.. |+....... ...
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ---NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc---chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 34445555556666666666666666665533 556666666666666666666666666553 222111111 111
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 038673 263 FAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEP 342 (548)
Q Consensus 263 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 342 (548)
+...++.++|+..|++... ..|
T Consensus 195 l~~~~~~~~a~~~l~~al~----------------------------------------------------------~~P 216 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVA----------------------------------------------------------ENP 216 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHH----------------------------------------------------------HCT
T ss_pred HHhhcccCccHHHHHHHHh----------------------------------------------------------cCC
Confidence 2333333334444433333 234
Q ss_pred C-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--chhHHHHHHHHHHcCCchHHHHHHHHH
Q 038673 343 N-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDK--IGNYIILSNIYASAGMWDDVSRVRRLL 404 (548)
Q Consensus 343 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m 404 (548)
+ ...+..+...+...|++++|...++++++.+|++ ...+..|+.+|...|+.++|...+++.
T Consensus 217 ~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 217 EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3 5666677777778888888888888888888876 677888888888888888888777654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.76 E-value=5.8e-07 Score=81.43 Aligned_cols=208 Identities=13% Similarity=-0.014 Sum_probs=129.7
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCC-HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGV-ETD-YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSA 227 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 227 (548)
...+..+...+.+.|++++|+..|+++.+... .|. ...+..+..++.+.|++++|...++.+++..+....-..++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 44566677778888888888888888876421 111 2456677778888888888888888888766441011124444
Q ss_pred HHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCC
Q 038673 228 LIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG 307 (548)
Q Consensus 228 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 307 (548)
+..+|.+.|.. .+ ..|..+...+...|+.++|+..|+++++ ..|+....
T Consensus 84 ~g~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a---------------- 132 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL--------QGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYT---------------- 132 (225)
T ss_dssp HHHHHHHHHC---------------------------CCHHHHHHHHHHHHHHT--TCTTCTTH----------------
T ss_pred HHHHHHhhhhh-----hh--------hhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhH----------------
Confidence 55555443321 11 1122333445567889999999999887 34553321
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc---hhHHHH
Q 038673 308 VSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKI---GNYIIL 384 (548)
Q Consensus 308 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l 384 (548)
+.....+ +...... ......+...+...|+++.|...++++++..|+++ .++..+
T Consensus 133 -------~~a~~~l----~~~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 190 (225)
T 2yhc_A 133 -------TDATKRL----VFLKDRL-----------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLM 190 (225)
T ss_dssp -------HHHHHHH----HHHHHHH-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred -------HHHHHHH----HHHHHHH-----------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHH
Confidence 1111000 0000000 00112344667889999999999999999999875 568899
Q ss_pred HHHHHHcCCchHHHHHHHHHHhCCCc
Q 038673 385 SNIYASAGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 385 ~~~~~~~g~~~~a~~~~~~m~~~g~~ 410 (548)
+.+|.+.|++++|.+.++.+...+..
T Consensus 191 ~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 191 ENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 99999999999999999988876543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-07 Score=82.41 Aligned_cols=157 Identities=10% Similarity=-0.007 Sum_probs=112.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 038673 223 VVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACS 299 (548)
Q Consensus 223 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 299 (548)
.....+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+.. +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~-------- 75 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-Y-------- 75 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-H--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-H--------
Confidence 3455667778888888888888888774 35667888888888888888888888877653 33221 1
Q ss_pred hcCCccCCCCcCHHHHHHHHHH-HHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038673 300 HVGLKCYGVSPSTDHYACMVDL-LGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 300 ~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 376 (548)
+..+... +...+...+|...+++.. ..|+ ...+..+...+...|++++|...++++++.+|+
T Consensus 76 ---------------~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 76 ---------------KSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp ---------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred ---------------HHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 1111111 112122233566665542 4565 778888889999999999999999999999987
Q ss_pred C--chhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 377 K--IGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 377 ~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
. +..+..++.+|...|+.++|...+++..
T Consensus 141 ~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 141 AQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 5 5589999999999999999999988764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-07 Score=79.58 Aligned_cols=102 Identities=12% Similarity=-0.054 Sum_probs=90.6
Q ss_pred CCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHH
Q 038673 307 GVSP-STDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYII 383 (548)
Q Consensus 307 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 383 (548)
.+.| +...+..+...+.+.|++++|.+.|++.. ..|+ ...|..+-.++...|++++|...|+++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4444 45567788889999999999999999884 4564 8889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 384 LSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 384 l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
++.+|...|++++|.+.+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987643
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.70 E-value=3e-07 Score=82.18 Aligned_cols=129 Identities=12% Similarity=0.021 Sum_probs=102.3
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc
Q 038673 155 AMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK 234 (548)
Q Consensus 155 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~ 234 (548)
.+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...++.+++..+. +..++..+...|..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD---NLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHH
Confidence 38889999999999999999998764 346778889999999999999999999999998755 88899999998876
Q ss_pred CCC--HHHHHHHHhcCCCCChhh--hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh
Q 038673 235 CGS--IDDAYRIFVGMKQRNVFS--YSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGV 289 (548)
Q Consensus 235 ~g~--~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 289 (548)
.|. .+.+...+.....++... |..+..++...|++++|+..|++.++ +.|+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 654 456777888887766543 34445566778999999999999987 566654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.1e-07 Score=97.20 Aligned_cols=160 Identities=13% Similarity=-0.030 Sum_probs=122.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHH
Q 038673 198 LGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQ 274 (548)
Q Consensus 198 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 274 (548)
.|++++|.+.++++.+.... +...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ---DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47889999999999887644 889999999999999999999999998764 456789999999999999999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHH
Q 038673 275 LFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLG 352 (548)
Q Consensus 275 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~ 352 (548)
.|++..+. .|+ +...+..+..+|.+.|++++|.+.+++.. ..|+ ...+..+..
T Consensus 79 ~~~~al~~--~p~-----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 133 (568)
T 2vsy_A 79 LLQQASDA--APE-----------------------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN 133 (568)
T ss_dssp HHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHhc--CCC-----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999883 444 34678899999999999999999999874 4454 678888889
Q ss_pred HHHhc---CCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 353 ACQIH---RNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 353 ~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
.+... |+.++|...++++++.+|.+...+..+.
T Consensus 134 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 134 WRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 99999 9999999999999999999888887766
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.7e-07 Score=97.96 Aligned_cols=148 Identities=11% Similarity=-0.006 Sum_probs=111.5
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHH
Q 038673 163 NAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY 242 (548)
Q Consensus 163 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~ 242 (548)
.|++++|+..|++..+.. +-+...+..+...+...|++++|.+.++++.+.... +..++..+...|.+.|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG---HPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHH
Confidence 478899999999887653 335678888999999999999999999999987654 8889999999999999999999
Q ss_pred HHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHH
Q 038673 243 RIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMV 319 (548)
Q Consensus 243 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li 319 (548)
+.|++..+ .+...|..+...|...|++++|++.|++..+. .|+ +...+..+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~-----------------------~~~~~~~l~ 132 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPE-----------------------EPYITAQLL 132 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------------------CHHHHHHHH
Confidence 99998763 45678999999999999999999999999873 343 345688899
Q ss_pred HHHHHc---CCHHHHHHHHHhCC
Q 038673 320 DLLGRA---GCLEEALKMVEKMP 339 (548)
Q Consensus 320 ~~~~~~---g~~~~A~~~~~~m~ 339 (548)
..+... |+.++|.+.+++..
T Consensus 133 ~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 133 NWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHhhccccHHHHHHHHHHHH
Confidence 999999 99999999998773
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.3e-07 Score=79.48 Aligned_cols=154 Identities=10% Similarity=0.022 Sum_probs=95.9
Q ss_pred HHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHcc
Q 038673 123 TELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISA-CAQL 198 (548)
Q Consensus 123 ~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~ 198 (548)
..+...+.+.|++++|...|++.. +.+...|..+...+.+.|++++|+..|++.... .|+.......... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence 334445555566666666665554 224556666666666677777777666665443 2232222111111 1122
Q ss_pred CChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--CC---hhhhHHHHHHHHhcCCHHHHH
Q 038673 199 GVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--RN---VFSYSSMILGFAMHGRAHAAI 273 (548)
Q Consensus 199 g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~A~ 273 (548)
+....+...++.+.+..+. +...+..+...|...|++++|...|+++.+ |+ ...+..+...+...|+.++|.
T Consensus 88 ~~~~~a~~~~~~al~~~P~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPD---NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred cccchHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2333467777777776544 778888888888888888888888887764 22 346778888888888888888
Q ss_pred HHHHHHHH
Q 038673 274 QLFGDMVK 281 (548)
Q Consensus 274 ~l~~~m~~ 281 (548)
..|++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.3e-06 Score=78.18 Aligned_cols=160 Identities=10% Similarity=-0.074 Sum_probs=106.8
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-CChhhhHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-RNVFSYSSMILGFAMHG----RAHAAIQLFGDMVKTETKPNGVTFIGVL 295 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll 295 (548)
++..+..|..+|...+++++|.+.|++..+ .++..+..|-..|.. + +.++|+..|++..+.|
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g------------ 83 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG------------ 83 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT------------
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC------------
Confidence 444555555555555556666555555442 244445555555554 4 6777777777765532
Q ss_pred HHHhhcCCccCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHhCC-CCCC---hhHHHHHHHHHHh----cCCHHHH
Q 038673 296 TACSHVGLKCYGVSPSTDHYACMVDLLGR----AGCLEEALKMVEKMP-VEPN---GGVWGALLGACQI----HRNPEIA 363 (548)
Q Consensus 296 ~a~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~-~~p~---~~~~~~ll~~~~~----~~~~~~a 363 (548)
+...+..|..+|.. .+++++|.+.|++.- ..|+ +..+..|-..+.. .++.++|
T Consensus 84 ---------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 84 ---------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp ---------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred ---------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 22345555556655 678888888887765 3342 6777777777777 7789999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHc-C-----CchHHHHHHHHHHhCCC
Q 038673 364 QIAANHLFELEPDKIGNYIILSNIYASA-G-----MWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 364 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 409 (548)
...+++..+. |.++..+..|+.+|... | ++++|...+++..+.|.
T Consensus 149 ~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 149 SEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999998887 66667888899888765 3 78999999998877665
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.65 E-value=5.9e-06 Score=84.07 Aligned_cols=336 Identities=7% Similarity=-0.135 Sum_probs=203.5
Q ss_pred CCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCC-cHHHHHHHHHHHHhCCC-CCChhHHHHHHHHHH----HcCCh
Q 038673 31 GHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD-VSLGQQIHAQTILLGGF-TSDLYVGNTMIGMYV----KCGFL 104 (548)
Q Consensus 31 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~-~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~----~~g~~ 104 (548)
|+++.+..+|++.... .|+...|..-++...+.++ .+....+|+.++..-|. +.+..+|...+..+. ..|++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7899999999998873 5788888888877766653 45677888888876323 346678888877654 34678
Q ss_pred HHHHHHHccCCC-CC--e-ehHHHHHHHHH-------------hCCChHHHHHHHccCC----CCChhHHHHHHHHHHHC
Q 038673 105 GCSRKVFDEMPE-RD--V-VSWTELIVAYA-------------NNGDMESAGGLFNELP----LKDKVAWTAMVTGYVQN 163 (548)
Q Consensus 105 ~~A~~~~~~m~~-~~--~-~~~~~li~~~~-------------~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~ 163 (548)
+.++++|++... |. . ..|......-. ..+.+..|..+++.+. ..+...|...+.--..+
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 889999888754 21 1 11221111000 0011222232222221 12444666655543322
Q ss_pred C--C-----hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCC
Q 038673 164 A--K-----PREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCG 236 (548)
Q Consensus 164 g--~-----~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g 236 (548)
+ - .+.+..+|+++.... +-+...|...+.-+...|+++.|..++++++.. | .+...+...... .+.+
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P-~~~~l~~~y~~~-~e~~ 259 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---S-DGMFLSLYYGLV-MDEE 259 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C-CSSHHHHHHHHH-TTCT
T ss_pred CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---C-CcHHHHHHHHhh-cchh
Confidence 1 1 234677888887743 445666776777778889999999999999988 3 344444433222 1111
Q ss_pred CHHHHHHHHhcCC------------CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCc
Q 038673 237 SIDDAYRIFVGMK------------QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLK 304 (548)
Q Consensus 237 ~~~~A~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 304 (548)
.. ...+.+... ......|-..+....+.+..+.|..+|++. .. |. .++
T Consensus 260 ~~--~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~---~~-~~~------------- 319 (493)
T 2uy1_A 260 AV--YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN---EG-VGP------------- 319 (493)
T ss_dssp HH--HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT---SC-CCH-------------
T ss_pred HH--HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC---CC-CCh-------------
Confidence 11 111221110 011245777777777788899999999988 31 22 121
Q ss_pred cCCCCcCHHHHHHHHHHHHH-cCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 038673 305 CYGVSPSTDHYACMVDLLGR-AGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNY 381 (548)
Q Consensus 305 ~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 381 (548)
..|...+..-.+ .++.+.|..+|+..- .-|+ +..|...+......|+.+.|..+++++ +.....+
T Consensus 320 --------~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw 387 (493)
T 2uy1_A 320 --------HVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMW 387 (493)
T ss_dssp --------HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHH
T ss_pred --------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHH
Confidence 223322222222 336899999998762 1233 455667777778889999999999997 3355677
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 382 IILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 382 ~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
...+..-...|+.+.+..+++++.+
T Consensus 388 ~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 388 DSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7787777888999999988877763
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-07 Score=89.44 Aligned_cols=192 Identities=10% Similarity=-0.120 Sum_probs=122.8
Q ss_pred HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHH
Q 038673 185 YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMIL 261 (548)
Q Consensus 185 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 261 (548)
...+..+...+...|++++|...++.+++.... +...+..+...|.+.|++++|...+++..+ .+...|..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345555666667777777777777777766543 677777888888888888888888877664 34567777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Q 038673 262 GFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVE 341 (548)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 341 (548)
+|...|++++|+..|++..+. .|+... .+ ....+..+ ...+...+.. .......
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l--~p~~~~----------------~~--~~~~~~~~--~~~~~~~~~~----~~~~~~~ 134 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL--AKEQRL----------------NF--GDDIPSAL--RIAKKKRWNS----IEERRIH 134 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HHHTTC----------------CC--CSHHHHHH--HHHHHHHHHH----HHHTCCC
T ss_pred HHHHcCCHHHHHHHHHHHHHh--Cccchh----------------hH--HHHHHHHH--HHHHHHHHHH----HHHHHHh
Confidence 888888888888888887763 222110 00 01111111 1122212222 2222323
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHc-CCchHHHHHHHHHHhC
Q 038673 342 PNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASA-GMWDDVSRVRRLLKMT 407 (548)
Q Consensus 342 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 407 (548)
++......+ ..+. .|+.+.|.+.++...+++|++......+...+.+. +++++|.++|....+.
T Consensus 135 ~~~~i~~~l-~~l~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 135 QESELHSYL-TRLI-AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp CCCHHHHHH-HHHH-HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hhHHHHHHH-HHHH-HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 344443333 3332 68889999999999999998877777777777776 6789999999887653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.61 E-value=3.2e-06 Score=75.47 Aligned_cols=132 Identities=8% Similarity=-0.085 Sum_probs=110.7
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhc
Q 038673 222 VVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV 301 (548)
Q Consensus 222 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 301 (548)
...+..+...|...|++++|...|++...++...|..+...|...|++++|+..|++..+. .|+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~-------------- 69 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKH-------------- 69 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT--------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Ccc--------------
Confidence 3456677888899999999999999998888899999999999999999999999998874 343
Q ss_pred CCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-----------------hhHHHHHHHHHHhcCCHHHH
Q 038673 302 GLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-----------------GGVWGALLGACQIHRNPEIA 363 (548)
Q Consensus 302 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-----------------~~~~~~ll~~~~~~~~~~~a 363 (548)
+...|..+..+|...|++++|.+.|++.. ..|+ ...|..+..++...|+++.|
T Consensus 70 ---------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 140 (213)
T 1hh8_A 70 ---------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 140 (213)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence 34568888899999999999999998763 2232 26777788899999999999
Q ss_pred HHHHHHHhhcCCCCc
Q 038673 364 QIAANHLFELEPDKI 378 (548)
Q Consensus 364 ~~~~~~~~~~~p~~~ 378 (548)
...++++++..|++.
T Consensus 141 ~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 141 EEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHcCcccc
Confidence 999999999999763
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.9e-06 Score=77.96 Aligned_cols=215 Identities=14% Similarity=0.078 Sum_probs=161.3
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHccC--ChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH----hc
Q 038673 162 QNAKPREAIEYFERMQYAGVETDY-VTLVGVISACAQLG--VIKYANWVCEIAEGSGFGPINNVVVGSALIDMY----SK 234 (548)
Q Consensus 162 ~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y----~~ 234 (548)
+....++|+.+++++... .|+. ..++.--..+...+ .++++.++++.++...+. +..+|+.-...+ .+
T Consensus 45 ~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk---~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 45 AEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK---NYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT---CCHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc---cHHHHHHHHHHHHHHHHh
Confidence 334456899999988875 4544 44666666777777 899999999999988765 666776655555 44
Q ss_pred C---CCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccC
Q 038673 235 C---GSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAH--AAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCY 306 (548)
Q Consensus 235 ~---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 306 (548)
. ++++++..+++.+.+ +|..+|+--.-.+...|.++ ++++.++++++. .|.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~------------------- 178 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLK------------------- 178 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTT-------------------
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCC-------------------
Confidence 5 788999999988874 56677877777777788888 999999999984 332
Q ss_pred CCCcCHHHHHHHHHHHHHcCC------HHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCH-HHHHHHHHHHhhcC---
Q 038673 307 GVSPSTDHYACMVDLLGRAGC------LEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNP-EIAQIAANHLFELE--- 374 (548)
Q Consensus 307 ~~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~--- 374 (548)
|...|+.-..++.+.|+ ++++++.++++- ..| |...|+.+-..+.+.|+. +....+++++.+++
T Consensus 179 ----N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T 3dra_A 179 ----NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQ 254 (306)
T ss_dssp ----CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTE
T ss_pred ----CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Confidence 33445554455555555 888888887763 345 588898888888887774 44667788777766
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 375 PDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 375 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
|.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 78888999999999999999999999999875
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=8.1e-07 Score=83.80 Aligned_cols=162 Identities=9% Similarity=-0.019 Sum_probs=110.1
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHHHHHHccCCC--CChhHH-HHHH
Q 038673 84 FTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESAGGLFNELPL--KDKVAW-TAMV 157 (548)
Q Consensus 84 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~-~~li 157 (548)
.+.+...+..+...+.+.|++++|...|++..+ | +...+..+...+.+.|++++|...|++... |+.... ....
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 345556666677777777777777777776653 3 455666777777777777777777777753 333222 2222
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCC
Q 038673 158 TGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGS 237 (548)
Q Consensus 158 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~ 237 (548)
..+.+.++.++|+..|++..... +.+...+..+..++...|++++|...+..+++..+.. .+...+..|+..|...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~-~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA-ADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG-GGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc-ccchHHHHHHHHHHHcCC
Confidence 34566677777888887776653 3456667777778888888888888888888776541 236778888888888888
Q ss_pred HHHHHHHHhc
Q 038673 238 IDDAYRIFVG 247 (548)
Q Consensus 238 ~~~A~~~~~~ 247 (548)
.++|...|++
T Consensus 271 ~~~a~~~~r~ 280 (287)
T 3qou_A 271 GDALASXYRR 280 (287)
T ss_dssp TCHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 8877777654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-06 Score=77.16 Aligned_cols=126 Identities=16% Similarity=-0.093 Sum_probs=79.9
Q ss_pred HHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChh
Q 038673 123 TELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIK 202 (548)
Q Consensus 123 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 202 (548)
..+...+...|++++|...|++...++...|..+...|...|++++|+..|++..... +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3445556666666666666666666666677777777777777777777777766543 334556666666777777777
Q ss_pred HHHHHHHHHHHcCCC--------------CCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 038673 203 YANWVCEIAEGSGFG--------------PINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ 250 (548)
Q Consensus 203 ~a~~~~~~~~~~~~~--------------p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 250 (548)
+|.+.++.+.+.... | ....++..+...|.+.|++++|...|+...+
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKL-FACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEE-EHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCc-cchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777777664432 1 1235566666666666666666666665543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.56 E-value=7.3e-07 Score=72.46 Aligned_cols=107 Identities=14% Similarity=0.084 Sum_probs=66.6
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 038673 255 SYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKM 334 (548)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 334 (548)
.|......|.+.|++++|++.|++.++ +.|+ +...|..+..+|.+.|++++|++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~-----------------------~~~~~~~~~~~~~~~~~~~~A~~~ 69 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPE-----------------------NAILYSNRAACLTKLMEFQRALDD 69 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT-----------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC-----------------------CHHHHHHHhhHHHhhccHHHHHHH
Confidence 345555666666777777777766665 2333 334466666666677777777776
Q ss_pred HHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 038673 335 VEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSN 386 (548)
Q Consensus 335 ~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 386 (548)
+++.. +.|+ ...|..+..++...|++++|...++++++++|+++.++..|.+
T Consensus 70 ~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 70 CDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 66552 3333 5566666666777777777777777777777776655555543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-07 Score=78.73 Aligned_cols=133 Identities=11% Similarity=-0.042 Sum_probs=68.8
Q ss_pred HcCChHHHHHHHccCCCC---CeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHH
Q 038673 100 KCGFLGCSRKVFDEMPER---DVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYF 173 (548)
Q Consensus 100 ~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 173 (548)
..|++++|...|+..... +...+-.+...|.+.|++++|.+.|++.. +.+..+|..+...|.+.|++++|+..|
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 334445555444444331 22233344444445555555555444432 335556666666666666666666666
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHccCChhHHHH-HHHHHHHcCCCCCChHhHHHHHHHHHhcCC
Q 038673 174 ERMQYAGVETDYVTLVGVISACAQLGVIKYANW-VCEIAEGSGFGPINNVVVGSALIDMYSKCG 236 (548)
Q Consensus 174 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~-~~~~~~~~~~~p~~~~~~~~~li~~y~~~g 236 (548)
++..+.. +-+...+..+...+.+.|+.+++.+ +++.+.+..+. ++.+|......+.+.|
T Consensus 89 ~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~---~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 89 RRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG---SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT---CHHHHHHHHHHHHTCC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHhC
Confidence 6665542 2234455566666666666654443 34555555433 5556655555555544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.55 E-value=3e-07 Score=87.75 Aligned_cols=186 Identities=11% Similarity=-0.029 Sum_probs=125.7
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCC---CCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-------C--ChhhhHHH
Q 038673 192 ISACAQLGVIKYANWVCEIAEGSGFG---PINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-------R--NVFSYSSM 259 (548)
Q Consensus 192 l~~~~~~g~~~~a~~~~~~~~~~~~~---p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l 259 (548)
...+...|++++|...+..+.+.... |.....+++.+...|.+.|++++|...|++..+ + -..+++.+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566778888888888777543211 001355788888888888988888887776542 1 13467778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 260 ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 260 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
...|.. |++++|+..|++..+.....+... ....++..+...|.+.|++++|++.|++..
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~-------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLR-------------------QAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH-------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChh-------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888 999999999998876310000000 013467888899999999999999998763
Q ss_pred -C---CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchh-----HHHHHHHHHHcCCchHHHH
Q 038673 340 -V---EPN----GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGN-----YIILSNIYASAGMWDDVSR 399 (548)
Q Consensus 340 -~---~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 399 (548)
+ .++ ...+..+..++...|+++.|...+++.+ +.|..... ...++..+ ..|+.+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 183 SMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 1 112 2255556667778899999999999999 88875432 33455555 5677665555
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3e-06 Score=76.66 Aligned_cols=60 Identities=13% Similarity=0.027 Sum_probs=50.3
Q ss_pred ehHHHHHHHHHhCCChHHHHHHHccCCC--CC----hhHHHHHHHHHHHCCChhHHHHHHHHHHHC
Q 038673 120 VSWTELIVAYANNGDMESAGGLFNELPL--KD----KVAWTAMVTGYVQNAKPREAIEYFERMQYA 179 (548)
Q Consensus 120 ~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 179 (548)
..+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|++..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4556677789999999999999998762 32 357888899999999999999999999875
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.5e-06 Score=76.43 Aligned_cols=159 Identities=13% Similarity=-0.026 Sum_probs=76.9
Q ss_pred hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC----ChHHHHHHHccCCC-CCeehHHHHH
Q 038673 52 SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCG----FLGCSRKVFDEMPE-RDVVSWTELI 126 (548)
Q Consensus 52 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~-~~~~~~~~li 126 (548)
..++..+...+...+++++|...++...+.| +...+..|..+|.. + ++++|.+.|++..+ .+..++..|.
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg 92 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3334444444444444444444444444333 23333334444433 3 44444444443322 1223333333
Q ss_pred HHHHh----CCChHHHHHHHccCCCCC-----hhHHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 038673 127 VAYAN----NGDMESAGGLFNELPLKD-----KVAWTAMVTGYVQ----NAKPREAIEYFERMQYAGVETDYVTLVGVIS 193 (548)
Q Consensus 127 ~~~~~----~g~~~~A~~~f~~m~~~~-----~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 193 (548)
..|.. .+++++|..+|++..+.+ +.++..|...|.. .+++++|+.+|++..+. ..+...+..+..
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGM 170 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHH
Confidence 33333 444555555555544322 4566666666666 66777777777776654 123334445555
Q ss_pred HHHcc-C-----ChhHHHHHHHHHHHcCCC
Q 038673 194 ACAQL-G-----VIKYANWVCEIAEGSGFG 217 (548)
Q Consensus 194 ~~~~~-g-----~~~~a~~~~~~~~~~~~~ 217 (548)
.|... | +.++|...++...+.|..
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 55432 2 677777777777666643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.3e-06 Score=81.49 Aligned_cols=120 Identities=5% Similarity=-0.121 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHcC----CCCCCh
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQYA----GVET-DYVTLVGVISACAQLGVIKYANWVCEIAEGSG----FGPINN 221 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~p~~~ 221 (548)
.+++.+...|.. |++++|+..|++.... |-.+ ...++..+...+...|++++|...++.+.+.. ..+ ..
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~ 194 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP-TC 194 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-HH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh-HH
Confidence 456677777777 8888888888776542 1111 13456677777788888888888888776532 111 11
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHhcCCCCCh--------hhhHHHHHHHHhcCCHHHHHH
Q 038673 222 VVVGSALIDMYSKCGSIDDAYRIFVGMKQRNV--------FSYSSMILGFAMHGRAHAAIQ 274 (548)
Q Consensus 222 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~ 274 (548)
...+..++..|...|++++|...|++.. .++ .....++.++ ..|+.+.+.+
T Consensus 195 ~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 195 YKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 2356667777777788888888887765 221 1233444444 4566555544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.3e-05 Score=73.90 Aligned_cols=215 Identities=5% Similarity=-0.092 Sum_probs=143.4
Q ss_pred CCchHHHHHHHHHHHCCCCCCh-hhHHHHHHHhhccC--CcHHHHHHHHHHHHhCCCCCChhHHHHHHHHH----HHcCC
Q 038673 31 GHLKDSISLYCSMRREGIGPVS-FTLSALFKACTEVL--DVSLGQQIHAQTILLGGFTSDLYVGNTMIGMY----VKCGF 103 (548)
Q Consensus 31 g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~ 103 (548)
...++|+++++.++. +.|+. ..|+.--..+...+ +++++...++.+++.. +.+..+|+.--..+ .+.+
T Consensus 47 e~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~- 121 (306)
T 3dra_A 47 EYSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNN- 121 (306)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhcc-
Confidence 334567777777776 34543 34565555555666 6777777777777664 55555665544444 3330
Q ss_pred hHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChh--HHHHHHHHHHH
Q 038673 104 LGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPR--EAIEYFERMQY 178 (548)
Q Consensus 104 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~ 178 (548)
..+++++++++++++. .++..+|+.-.-.+.+.|.++ ++++.++++.+
T Consensus 122 ---------------------------~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~ 174 (306)
T 3dra_A 122 ---------------------------NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID 174 (306)
T ss_dssp ---------------------------TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred ---------------------------ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence 0034444444444443 446667777777777777777 88888888887
Q ss_pred CCCCCCHhhHHHHHHHHHccCC------hhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHH-HHHHHhcCCC-
Q 038673 179 AGVETDYVTLVGVISACAQLGV------IKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD-AYRIFVGMKQ- 250 (548)
Q Consensus 179 ~g~~p~~~t~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~-A~~~~~~~~~- 250 (548)
.. +-|...++.-.....+.+. ++++.+.+..++...+. +...|+-+...+.+.|+... +..+..++.+
T Consensus 175 ~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~---n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 250 (306)
T 3dra_A 175 TD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ---NPSTWNYLLGIHERFDRSITQLEEFSLQFVDL 250 (306)
T ss_dssp HC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred hC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC---CccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 64 3366666665555556665 78888888888887755 89999988888888887443 4455555442
Q ss_pred -----CChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 251 -----RNVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 251 -----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
++...+..+...|.+.|+.++|+++++.+.+
T Consensus 251 ~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 251 EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 3567788888899999999999999999875
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.6e-06 Score=68.25 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=91.8
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 038673 253 VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEAL 332 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 332 (548)
...|..+...+...|++++|++.|+++.+. .|+ +...+..+...+.+.|++++|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------------------~~~~~~~la~~~~~~~~~~~A~ 63 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPN-----------------------NAEAWYNLGNAYYKQGDYDEAI 63 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcC-----------------------cHHHHHHHHHHHHHhCCHHHHH
Confidence 456777888888899999999999988774 232 3345777888888999999999
Q ss_pred HHHHhCC-CC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC
Q 038673 333 KMVEKMP-VE-PNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAG 392 (548)
Q Consensus 333 ~~~~~m~-~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 392 (548)
.+++++. .. .+..+|..+...+...|+++.|...++++.+..|+++..+..++.++...|
T Consensus 64 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 64 EYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9998774 23 357778888888999999999999999999999998888888887776543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.7e-06 Score=72.36 Aligned_cols=127 Identities=8% Similarity=0.022 Sum_probs=104.3
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALK 333 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 333 (548)
..|..+...+...|++++|+..|++..+. .|+ +...+..+...+...|++++|.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~-----------------------~~~~~~~~a~~~~~~~~~~~A~~ 68 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPS-----------------------NAIYYGNRSLAYLRTECYGYALG 68 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT-----------------------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC-----------------------ChHHHHHHHHHHHHcCCHHHHHH
Confidence 45777788888999999999999998873 333 34567788889999999999999
Q ss_pred HHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHH--HHHcCCchHHHHHHHHHH
Q 038673 334 MVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNI--YASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 334 ~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~ 405 (548)
.+++.. ..| +...|..+..++...|+++.|...++++++..|.+...+..+..+ +...|++++|.+.+....
T Consensus 69 ~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 69 DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 998773 344 477888888899999999999999999999999988777544444 888899999999988764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-06 Score=70.31 Aligned_cols=95 Identities=12% Similarity=0.070 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 389 (548)
...+......|.+.|++++|++.|++.. ..| +...|..+..++...|+++.|+..++++++++|+++.+|..++.+|.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3567788899999999999999999873 455 47888888899999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHh
Q 038673 390 SAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 390 ~~g~~~~a~~~~~~m~~ 406 (548)
..|++++|.+.+++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999998865
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.45 E-value=2.2e-05 Score=79.84 Aligned_cols=333 Identities=10% Similarity=-0.017 Sum_probs=207.1
Q ss_pred cchHHHhccCC--CCCcchHHHHHHHHHhCCC-chHHHHHHHHHHHC-CCCC-ChhhHHHHHHHhh----ccCCcHHHHH
Q 038673 3 SFPRLVFEQVK--YKNPFLWTALIRGYILQGH-LKDSISLYCSMRRE-GIGP-VSFTLSALFKACT----EVLDVSLGQQ 73 (548)
Q Consensus 3 ~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~p-~~~~~~~ll~a~~----~~~~~~~a~~ 73 (548)
+.|+.+|++-- .|++..|..-+....+.+. .+....+|+..... |..| +...|...+..+. ..++++.+..
T Consensus 31 e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~ 110 (493)
T 2uy1_A 31 RSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRN 110 (493)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 55777776544 3788899999988777763 45677888887764 5444 5566777776654 2456788999
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHH-------------cCChHHHHHHHccCCC----CCeehHHHHHHHHHhCC--C
Q 038673 74 IHAQTILLGGFTSDLYVGNTMIGMYVK-------------CGFLGCSRKVFDEMPE----RDVVSWTELIVAYANNG--D 134 (548)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g--~ 134 (548)
+|+.+++.. ...-...|......-.. .+.+..|+.+++.+.. .+...|...+.--...+ -
T Consensus 111 iy~rAL~~P-~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~ 189 (493)
T 2uy1_A 111 GYMRALQTP-MGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKL 189 (493)
T ss_dssp HHHHHHTSC-CTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHhCh-hhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccC
Confidence 999999843 22222233333221111 1122333444333321 13335655555433221 1
Q ss_pred -----hHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHH
Q 038673 135 -----MESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANW 206 (548)
Q Consensus 135 -----~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 206 (548)
.+.+..+|++.. ..+...|-..+.-+.+.|+.++|..+|++.... |+...+.. .++.....++.
T Consensus 190 ~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~-- 261 (493)
T 2uy1_A 190 GGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV-- 261 (493)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH--
T ss_pred cchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH--
Confidence 234555666654 335778998999999999999999999999887 54443322 22222222222
Q ss_pred HHHHHHHcC---------C-CCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCC--hhhhHHHHHHHH-hcCCHHHHH
Q 038673 207 VCEIAEGSG---------F-GPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRN--VFSYSSMILGFA-MHGRAHAAI 273 (548)
Q Consensus 207 ~~~~~~~~~---------~-~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~-~~g~~~~A~ 273 (548)
++.+.+.- . .+.....+|...+..+.+.+.++.|..+|++...++ ...|-.....-. ..++.+.|.
T Consensus 262 -~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar 340 (493)
T 2uy1_A 262 -YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPY 340 (493)
T ss_dssp -HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHH
T ss_pred -HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHH
Confidence 22222211 0 110133567778888888899999999999884333 223332222112 234699999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHH
Q 038673 274 QLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGA 353 (548)
Q Consensus 274 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 353 (548)
.+|+...+.- |+. +..+...++...+.|+.+.|..+|+... .....|...+..
T Consensus 341 ~ife~al~~~--~~~-----------------------~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~f 393 (493)
T 2uy1_A 341 NIFSSGLLKH--PDS-----------------------TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEY 393 (493)
T ss_dssp HHHHHHHHHC--TTC-----------------------HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCC-----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 9999988742 332 2335566787888999999999999984 357889888888
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 038673 354 CQIHRNPEIAQIAANHLFE 372 (548)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~ 372 (548)
-..+|+.+.+..++++..+
T Consensus 394 E~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 394 EFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 8889999999998888775
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=3.6e-06 Score=68.00 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=97.8
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 038673 252 NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEA 331 (548)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 331 (548)
+...|..+...+...|++++|+..|++.... .|+ +...+..+...+...|++++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------------------~~~~~~~~a~~~~~~~~~~~A 65 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPA-----------------------NAVYFCNRAAAYSKLGNYAGA 65 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCC-----------------------CHHHHHHHHHHHHHhhchHHH
Confidence 3456777888888999999999999998873 333 345677888889999999999
Q ss_pred HHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCch
Q 038673 332 LKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWD 395 (548)
Q Consensus 332 ~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 395 (548)
.+.+++.. ..|+ ...|..+...+...|+++.|...++++.+..|+++..+..++.++...|+++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99998764 3444 6778888889999999999999999999999999889999999998888753
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2e-06 Score=72.10 Aligned_cols=97 Identities=8% Similarity=-0.021 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIY 388 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 388 (548)
+...+..+...+.+.|++++|...|++.. ..| +...|..+-.++...|++++|...++++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34567778889999999999999999874 445 5788888889999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 038673 389 ASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 389 ~~~g~~~~a~~~~~~m~~~ 407 (548)
...|++++|.+.++...+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.42 E-value=5.4e-06 Score=78.32 Aligned_cols=156 Identities=6% Similarity=-0.123 Sum_probs=112.8
Q ss_pred HHHHHHhCCChHHHHHHHccCCCC-----C----hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCC-CC----HhhHHH
Q 038673 125 LIVAYANNGDMESAGGLFNELPLK-----D----KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVE-TD----YVTLVG 190 (548)
Q Consensus 125 li~~~~~~g~~~~A~~~f~~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ 190 (548)
.+..+...|++++|..++++.... + ...+..+...+...|++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356677777777777777664321 1 113334666777778999999999988874322 22 225788
Q ss_pred HHHHHHccCChhHHHHHHHHHHH----c-CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----C---C-hhhh
Q 038673 191 VISACAQLGVIKYANWVCEIAEG----S-GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----R---N-VFSY 256 (548)
Q Consensus 191 ll~~~~~~g~~~~a~~~~~~~~~----~-~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~---~-~~~~ 256 (548)
+..++...|++++|...++.+.+ . +..| ....++..+...|.+.|++++|...+++..+ . . ..+|
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEE-FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88889999999999999988874 2 2222 3455888899999999999999999887653 1 1 4578
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHH
Q 038673 257 SSMILGFAMHGR-AHAAIQLFGDMVK 281 (548)
Q Consensus 257 ~~li~~~~~~g~-~~~A~~l~~~m~~ 281 (548)
..+...|...|+ .++|++.|++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 888889999995 6999999988765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.1e-06 Score=68.83 Aligned_cols=117 Identities=12% Similarity=0.012 Sum_probs=85.3
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 038673 252 NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEA 331 (548)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 331 (548)
+...|..+...+...|++++|+..|++..+. .|+ +...+..+...|...|++++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~-----------------------~~~~~~~la~~~~~~~~~~~A 69 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPK-----------------------DAKLYSNRAACYTKLLEFQLA 69 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTT-----------------------CHHHHHHHHHHHTTTTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-----------------------cHHHHHHHHHHHHHhccHHHH
Confidence 3456666777777777777887777777662 332 234566677777778888888
Q ss_pred HHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 038673 332 LKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGM 393 (548)
Q Consensus 332 ~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 393 (548)
.+.+++.. ..| +...|..+..++...|+++.|...++++++..|.+...+..+..++...|+
T Consensus 70 ~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 70 LKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 87777663 334 466777777888888889999999988888888888888888888776653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=5.4e-07 Score=79.73 Aligned_cols=172 Identities=9% Similarity=-0.093 Sum_probs=109.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH-HHHHhhc
Q 038673 226 SALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGV-LTACSHV 301 (548)
Q Consensus 226 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~ 301 (548)
+..+......|+++++.+.|+.-.+ .....|..+...+...|++++|+..|++.... .|+...+... +....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~-- 83 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKK-- 83 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHH--
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHH--
Confidence 3444555566777777777765443 23456777888899999999999999999873 3332100000 00000
Q ss_pred CCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 302 GLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 302 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
.......|..+..+|.+.|++++|...+++.. ..| +...|..+..++...|+++.|...+++++++.|+++.
T Consensus 84 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 84 ------KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp ------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred ------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence 00012567888899999999999999998874 344 4778888889999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCchHHH-HHHHHHHhC
Q 038673 380 NYIILSNIYASAGMWDDVS-RVRRLLKMT 407 (548)
Q Consensus 380 ~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 407 (548)
.+..+..++...|+.+++. ..++.|...
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 158 IRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999998888777776 445555433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.5e-05 Score=75.18 Aligned_cols=162 Identities=9% Similarity=-0.009 Sum_probs=119.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCCC---Ch------hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038673 225 GSALIDMYSKCGSIDDAYRIFVGMKQR---NV------FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVL 295 (548)
Q Consensus 225 ~~~li~~y~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 295 (548)
+...+..+.+.|++++|...+++..+. +. ..+..+...+...|++++|+..|++........+...
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~----- 152 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY----- 152 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT-----
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH-----
Confidence 334477888899999999999886542 11 1233466667777899999999999988422211110
Q ss_pred HHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCC----hhHHHHHHHHHHhcCCHHHHHHH
Q 038673 296 TACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-----VEPN----GGVWGALLGACQIHRNPEIAQIA 366 (548)
Q Consensus 296 ~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~----~~~~~~ll~~~~~~~~~~~a~~~ 366 (548)
-...+|+.+...|...|++++|...+++.. ...+ ..++..+...|...|++++|...
T Consensus 153 --------------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~ 218 (293)
T 3u3w_A 153 --------------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp --------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 012358889999999999999999888763 1112 34677788899999999999999
Q ss_pred HHHHhhcCCCC------chhHHHHHHHHHHcCC-chHHHHHHHHHH
Q 038673 367 ANHLFELEPDK------IGNYIILSNIYASAGM-WDDVSRVRRLLK 405 (548)
Q Consensus 367 ~~~~~~~~p~~------~~~~~~l~~~~~~~g~-~~~a~~~~~~m~ 405 (548)
+++++++.+.. ...|..++.+|.+.|+ +++|.+.+++..
T Consensus 219 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99998854332 5688999999999995 599999888775
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.6e-06 Score=88.07 Aligned_cols=121 Identities=8% Similarity=0.037 Sum_probs=98.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 038673 258 SMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEK 337 (548)
Q Consensus 258 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 337 (548)
.+...+...|++++|++.|++..+. .|+ +...|..+..+|.+.|++++|++.+++
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~--~p~-----------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 65 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIEL--NPS-----------------------NAIYYGNRSLAYLRTECYGYALGDATR 65 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh--CCc-----------------------cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3344566789999999999999883 444 345688899999999999999999988
Q ss_pred CC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHH--HHHcCCchHHHHHHHH
Q 038673 338 MP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNI--YASAGMWDDVSRVRRL 403 (548)
Q Consensus 338 m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 403 (548)
.. ..|+ ...|..+..++...|++++|.+.+++++++.|++...+..+..+ +.+.|++++|.+.+++
T Consensus 66 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 74 5565 77888888999999999999999999999999999899888888 8889999999998874
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.2e-06 Score=75.67 Aligned_cols=151 Identities=13% Similarity=-0.015 Sum_probs=97.8
Q ss_pred hCCChHHHHH---HHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHH----CCCCC-CHhhHHHHHHHHHccCChh
Q 038673 131 NNGDMESAGG---LFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQY----AGVET-DYVTLVGVISACAQLGVIK 202 (548)
Q Consensus 131 ~~g~~~~A~~---~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~t~~~ll~~~~~~g~~~ 202 (548)
..|++++|.+ ++..-+.....++..+...|...|++++|+..+++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 55443333556777777778888888888887777654 12222 2345666667777888888
Q ss_pred HHHHHHHHHHHc----CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CCh----hhhHHHHHHHHhcCCH
Q 038673 203 YANWVCEIAEGS----GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----RNV----FSYSSMILGFAMHGRA 269 (548)
Q Consensus 203 ~a~~~~~~~~~~----~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~ 269 (548)
+|...+....+. +..|.....++..+...|...|++++|...+++..+ .+. .++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 888887776553 211101345677778888888888888888776542 222 2356677778888888
Q ss_pred HHHHHHHHHHHH
Q 038673 270 HAAIQLFGDMVK 281 (548)
Q Consensus 270 ~~A~~l~~~m~~ 281 (548)
++|...+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.37 E-value=3.3e-06 Score=70.13 Aligned_cols=96 Identities=10% Similarity=-0.075 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 389 (548)
...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|+++.|...++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3456667788999999999999999874 445 57788888899999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 038673 390 SAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 390 ~~g~~~~a~~~~~~m~~~ 407 (548)
..|++++|.+.++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2.4e-06 Score=82.57 Aligned_cols=143 Identities=9% Similarity=-0.018 Sum_probs=109.4
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCc-CHHHHHHHHHHHHHcCCHHH
Q 038673 252 NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSP-STDHYACMVDLLGRAGCLEE 330 (548)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 330 (548)
+...|..+...|...|++++|+..|++.++. .|+...+..- ......| ....|..+..+|.+.|++++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~---------~~~~~~~~~~~~~~nla~~~~~~g~~~~ 214 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNE---------EAQKAQALRLASHLNLAMCHLKLQAFSA 214 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSH---------HHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChH---------HHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3456777888888889999999999888873 3332100000 0000000 13568889999999999999
Q ss_pred HHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHH-HHHHHHH
Q 038673 331 ALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVS-RVRRLLK 405 (548)
Q Consensus 331 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~ 405 (548)
|+..+++.. +.| +...|..+..++...|++++|...++++++++|++..++..++.++...|++++|. ..++.|.
T Consensus 215 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 215 AIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999874 445 47788888899999999999999999999999999999999999999999999984 4566654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.34 E-value=9.8e-06 Score=68.75 Aligned_cols=128 Identities=9% Similarity=-0.063 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+..+.+.... +..++..+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHHHH
Confidence 4567778888888899999999888887653 335677778888888889999999999888887644 778888888
Q ss_pred HHHhcCCCHHHHHHHHhcCCC---CChhhhHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 038673 230 DMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSM--ILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 230 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l--i~~~~~~g~~~~A~~l~~~m~~ 281 (548)
..|.+.|++++|...|++..+ .+...+..+ ...+...|++++|+..+.....
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 899999999999999887763 344445333 3347778899999998887654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.7e-05 Score=74.88 Aligned_cols=166 Identities=8% Similarity=-0.050 Sum_probs=121.6
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCh------hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNV------FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTF 291 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 291 (548)
....+...+..|...|++++|.+.+....+ ... ..+..+...+...|++++|+..+++..+........
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-- 151 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV-- 151 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT--
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch--
Confidence 444556678888899999999888875432 111 223445566778899999999999988642211100
Q ss_pred HHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCC-----hhHHHHHHHHHHhcCCHHH
Q 038673 292 IGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP----VEPN-----GGVWGALLGACQIHRNPEI 362 (548)
Q Consensus 292 ~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~-----~~~~~~ll~~~~~~~~~~~ 362 (548)
.-...+|+.+...|...|++++|...+++.. ..|+ ..++..+...|...|++++
T Consensus 152 -----------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~ 214 (293)
T 2qfc_A 152 -----------------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEE 214 (293)
T ss_dssp -----------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHH
Confidence 0013468889999999999999999998762 1233 2577788889999999999
Q ss_pred HHHHHHHHhhcCCC------CchhHHHHHHHHHHcCCchHH-HHHHHHHH
Q 038673 363 AQIAANHLFELEPD------KIGNYIILSNIYASAGMWDDV-SRVRRLLK 405 (548)
Q Consensus 363 a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 405 (548)
|...+++.+++.++ ...+|..++.+|.+.|++++| ...+++..
T Consensus 215 Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 215 SLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 99999999885332 145788999999999999999 77677654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.33 E-value=5.2e-06 Score=76.60 Aligned_cols=182 Identities=10% Similarity=-0.080 Sum_probs=97.3
Q ss_pred hCCCchHHHHHHHHHHHCCCCCC-hhhHHHH-------HHHhhccCCcHHHHHHHHHHHHhCCCCCC-------------
Q 038673 29 LQGHLKDSISLYCSMRREGIGPV-SFTLSAL-------FKACTEVLDVSLGQQIHAQTILLGGFTSD------------- 87 (548)
Q Consensus 29 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l-------l~a~~~~~~~~~a~~~~~~~~~~~~~~~~------------- 87 (548)
+.+++..|.+.|.+..+. .|+ ...|..+ ...+...++..++...+...+. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~---l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ---ISMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT---CCGGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc---CChhhhhhhhccCCccc
Confidence 567888888888888774 443 3455554 2222222222222222222222 2221
Q ss_pred ---------hhHHHHHHHHHHHcCChHHHHHHHccCCC--CCeehHHHHHHHHHhCCChHHHHHHHccCCCC-C----hh
Q 038673 88 ---------LYVGNTMIGMYVKCGFLGCSRKVFDEMPE--RDVVSWTELIVAYANNGDMESAGGLFNELPLK-D----KV 151 (548)
Q Consensus 88 ---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~----~~ 151 (548)
..++-.+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+..... + ..
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12234455666667777777777777654 32224444455666666677776666654432 1 22
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETD--YVTLVGVISACAQLGVIKYANWVCEIAEGSG 215 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 215 (548)
.+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|...|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455566666666666666666666653322133 1233444455566666666666666666544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=4.6e-06 Score=67.45 Aligned_cols=96 Identities=11% Similarity=0.023 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 389 (548)
...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|...++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4567778889999999999999998873 445 47888888899999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 038673 390 SAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 390 ~~g~~~~a~~~~~~m~~~ 407 (548)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999988753
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.31 E-value=5.9e-06 Score=76.23 Aligned_cols=183 Identities=10% Similarity=-0.048 Sum_probs=121.7
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCChhHHHHH-------HHHHHHcCChHHHHHHHccCCC--C-------C-e-------
Q 038673 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTM-------IGMYVKCGFLGCSRKVFDEMPE--R-------D-V------- 119 (548)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~--~-------~-~------- 119 (548)
..++...|.+.|..+.+.. +.....|+.+ ...+.+.++..++...++.-.+ | + .
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5789999999999999986 7777888877 4555555555555555554443 1 1 0
Q ss_pred -------ehHHHHHHHHHhCCChHHHHHHHccCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HhhH
Q 038673 120 -------VSWTELIVAYANNGDMESAGGLFNELPL--KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD--YVTL 188 (548)
Q Consensus 120 -------~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~ 188 (548)
..+-.....+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~ 174 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAG 174 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHH
Confidence 0123456677888889999888888863 322255666667888888888888887554321 111 2356
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 189 VGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 189 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
..+..++...|++++|...|++.......|.........+..++.+.|+.++|..+|+++.
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6677778888888888888888775433241244456666666777777777777776654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.6e-05 Score=70.07 Aligned_cols=153 Identities=9% Similarity=-0.037 Sum_probs=99.1
Q ss_pred cCCCHHHHHH---HHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHhhcCCccCCCC
Q 038673 234 KCGSIDDAYR---IFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKP-NGVTFIGVLTACSHVGLKCYGVS 309 (548)
Q Consensus 234 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~~~~ 309 (548)
..|++++|.+ .+..-+......+..+...|...|++++|+..+++........ +..
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------- 63 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT-------------------- 63 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHH--------------------
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcH--------------------
Confidence 4567777777 5544333345566777777777777777777777766521100 100
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCC-C----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--CC-
Q 038673 310 PSTDHYACMVDLLGRAGCLEEALKMVEKMP----VEP-N----GGVWGALLGACQIHRNPEIAQIAANHLFELEP--DK- 377 (548)
Q Consensus 310 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p--~~- 377 (548)
.....+..+...|...|++++|.+.+++.. ..+ + ...+..+...+...|++++|...+++.++..+ .+
T Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 143 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ 143 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccch
Confidence 123456677778888888888888777652 122 2 33456666778888999999999888876322 12
Q ss_pred ---chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 378 ---IGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 378 ---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
...+..++.+|...|++++|.+.+++..+
T Consensus 144 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 144 VAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 22457888999999999999998887754
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.5e-06 Score=72.85 Aligned_cols=120 Identities=11% Similarity=0.161 Sum_probs=97.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC
Q 038673 264 AMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEP 342 (548)
Q Consensus 264 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p 342 (548)
...|++++|+..+++..+. .|+ +...|..+...|...|++++|...|++.. ..|
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~-----------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 75 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQ-----------------------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG 75 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCS-----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred hhccCHHHHHHHHHHHHHh--CCC-----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4568888999999988773 333 44568888999999999999999999874 334
Q ss_pred -ChhHHHHHHHH-HHhcCCH--HHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 343 -NGGVWGALLGA-CQIHRNP--EIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 343 -~~~~~~~ll~~-~~~~~~~--~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
+...|..+..+ +...|++ +.|...++++++.+|+++..+..++.+|...|++++|...+++..+..
T Consensus 76 ~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 46677777777 7788998 999999999999999999999999999999999999999999987644
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.9e-06 Score=71.08 Aligned_cols=105 Identities=9% Similarity=-0.082 Sum_probs=80.7
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 038673 252 NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEA 331 (548)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 331 (548)
+...+..+...+...|++++|+..|++... ..|+ +...|..+..+|...|++++|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~-----------------------~~~~~~~lg~~~~~~g~~~~A 74 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHY-----------------------DSRFFLGLGACRQAMGQYDLA 74 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT-----------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcc-----------------------cHHHHHHHHHHHHHHhhHHHH
Confidence 344566677778888888888888888876 3343 344577777888888888888
Q ss_pred HHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 038673 332 LKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNY 381 (548)
Q Consensus 332 ~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 381 (548)
.+.|++.. ..|+ ...|..+..++...|++++|...+++++++.|+++...
T Consensus 75 ~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 75 IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 88888763 4454 67777788889999999999999999999988877543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.27 E-value=6.6e-05 Score=70.76 Aligned_cols=161 Identities=8% Similarity=-0.072 Sum_probs=98.0
Q ss_pred hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCC----hhHHHHHHHHHHHcCChHHHHHHHccCCC-----CC----
Q 038673 52 SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSD----LYVGNTMIGMYVKCGFLGCSRKVFDEMPE-----RD---- 118 (548)
Q Consensus 52 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~---- 118 (548)
...+...+..+...|++++|...+...++.....++ ...+..+...|...|++++|...|++..+ .+
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345555556666666677776666666654311111 12234455556666677777776655432 11
Q ss_pred eehHHHHHHHHHhCCChHHHHHHHccCC-------CC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC----CCCC
Q 038673 119 VVSWTELIVAYANNGDMESAGGLFNELP-------LK---DKVAWTAMVTGYVQNAKPREAIEYFERMQYAG----VETD 184 (548)
Q Consensus 119 ~~~~~~li~~~~~~g~~~~A~~~f~~m~-------~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~ 184 (548)
..+|+.+...|...|++++|...|++.. .. ...+|+.+...|...|++++|+..+++..... ....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 2356666777777777777777766543 11 12578888888999999999999988765421 1111
Q ss_pred -HhhHHHHHHHHHccCChhHH-HHHHHHHH
Q 038673 185 -YVTLVGVISACAQLGVIKYA-NWVCEIAE 212 (548)
Q Consensus 185 -~~t~~~ll~~~~~~g~~~~a-~~~~~~~~ 212 (548)
..+|..+..++...|+.++| ...++.+.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45566777777778888777 66566543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.8e-06 Score=65.20 Aligned_cols=98 Identities=16% Similarity=0.078 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CchhHHHHHHH
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPD--KIGNYIILSNI 387 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 387 (548)
...+..+...+.+.|++++|...+++.. ..| +...|..+...+...|++++|...++++++..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4557778888999999999999998873 334 5778888889999999999999999999999999 99999999999
Q ss_pred HHHc-CCchHHHHHHHHHHhCCC
Q 038673 388 YASA-GMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 388 ~~~~-g~~~~a~~~~~~m~~~g~ 409 (548)
|... |++++|.+.++...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999999876543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.26 E-value=9.6e-06 Score=66.45 Aligned_cols=98 Identities=13% Similarity=0.032 Sum_probs=88.0
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 038673 310 PSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNI 387 (548)
Q Consensus 310 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 387 (548)
.+...+..+...+...|++++|...|++.. ..|+ ...|..+..++...|+++.|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 356788899999999999999999998863 3454 77888888999999999999999999999999999999999999
Q ss_pred HHHcCCchHHHHHHHHHHhC
Q 038673 388 YASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 388 ~~~~g~~~~a~~~~~~m~~~ 407 (548)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988754
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.25 E-value=2.3e-06 Score=80.44 Aligned_cols=90 Identities=11% Similarity=-0.059 Sum_probs=47.5
Q ss_pred HHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 038673 124 ELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGV 200 (548)
Q Consensus 124 ~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 200 (548)
.+...+.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..+++..+.. +.+...+..+..++...|+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 87 (281)
T 2c2l_A 9 EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMES 87 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 33334444444444444444332 2245556666666666666666666666655432 2234455555566666666
Q ss_pred hhHHHHHHHHHHHc
Q 038673 201 IKYANWVCEIAEGS 214 (548)
Q Consensus 201 ~~~a~~~~~~~~~~ 214 (548)
+++|...+..+.+.
T Consensus 88 ~~~A~~~~~~al~l 101 (281)
T 2c2l_A 88 YDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666655543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.5e-05 Score=63.65 Aligned_cols=93 Identities=20% Similarity=0.179 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDM 231 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~ 231 (548)
.|..+...+...|++++|..+|+++.... +.+..++..+...+...|++++|...++.+.+.... +..++..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~ 86 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHH
Confidence 33344444444444444444444443321 122333334444444444444444444444433222 33344444444
Q ss_pred HhcCCCHHHHHHHHhcC
Q 038673 232 YSKCGSIDDAYRIFVGM 248 (548)
Q Consensus 232 y~~~g~~~~A~~~~~~~ 248 (548)
|.+.|++++|...|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHH
Confidence 44444444444444433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=9e-05 Score=70.69 Aligned_cols=225 Identities=12% Similarity=0.059 Sum_probs=151.2
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCCChHhHHHHHHHH
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLG-VIKYANWVCEIAEGSGFGPINNVVVGSALIDM 231 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~ 231 (548)
++.+-......+..++|+++++++...+ +-+...++.--..+...+ .++++.++++.++...++ +..+|+.-.-.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK---ny~aW~hR~wl 132 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK---SYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC---CHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC---cHHHHHHHHHH
Confidence 3333334445566678999999988753 224444666556666677 589999999999988766 88888887777
Q ss_pred HhcC-C-CHHHHHHHHhcCCCC---ChhhhHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038673 232 YSKC-G-SIDDAYRIFVGMKQR---NVFSYSSMILGFAMHGRAH--------AAIQLFGDMVKTETKPNGVTFIGVLTAC 298 (548)
Q Consensus 232 y~~~-g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 298 (548)
+.+. + +++++.++++.+.+. |..+|+--.-.+.+.|.++ ++++.++++++. .|.
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~----------- 199 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGR----------- 199 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTT-----------
T ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCC-----------
Confidence 7766 6 788999999988864 5556665444444444444 899999999884 333
Q ss_pred hhcCCccCCCCcCHHHHHHHHHHHHHcCC-------HHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCH---------
Q 038673 299 SHVGLKCYGVSPSTDHYACMVDLLGRAGC-------LEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNP--------- 360 (548)
Q Consensus 299 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~--------- 360 (548)
|...|+....++.+.++ ++++++.+++.- ..| |...|+-+-..+.+.|..
T Consensus 200 ------------N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~ 267 (349)
T 3q7a_A 200 ------------NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAIL 267 (349)
T ss_dssp ------------CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHG
T ss_pred ------------CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccc
Confidence 33456666666666655 678888887663 445 477887777766666553
Q ss_pred -----------HHHHHHHHHHhhcC------CCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 361 -----------EIAQIAANHLFELE------PDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 361 -----------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
.........+.... +.++.+...|+.+|...|+.++|.++++.+.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 268 PYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222322332222 45666788999999999999999999999863
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=3.2e-06 Score=68.08 Aligned_cols=94 Identities=19% Similarity=0.085 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHc
Q 038673 314 HYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASA 391 (548)
Q Consensus 314 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 391 (548)
.+..+...+.+.|++++|...|++.. ..| +...|..+-.++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35567788899999999999999874 456 4778888889999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhC
Q 038673 392 GMWDDVSRVRRLLKMT 407 (548)
Q Consensus 392 g~~~~a~~~~~~m~~~ 407 (548)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.23 E-value=7.6e-06 Score=69.71 Aligned_cols=97 Identities=10% Similarity=-0.015 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIY 388 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 388 (548)
+...+..+...+.+.|++++|++.|++.. ..| +...|..+..++...|++++|...++++++++|+++..|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 55678888999999999999999999874 445 5778888889999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 038673 389 ASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 389 ~~~g~~~~a~~~~~~m~~~ 407 (548)
...|++++|.+.+++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 9999999999999988764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-05 Score=63.59 Aligned_cols=97 Identities=12% Similarity=0.079 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIY 388 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 388 (548)
....+..+...+...|++++|.+.+++.. ..| +...|..+...+...|+++.|...++++.+..|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34567888899999999999999999874 344 5778888889999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 038673 389 ASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 389 ~~~g~~~~a~~~~~~m~~~ 407 (548)
...|++++|.+.++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988754
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.22 E-value=7.5e-06 Score=70.69 Aligned_cols=116 Identities=9% Similarity=0.009 Sum_probs=65.5
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHH-HhcCCCH--
Q 038673 162 QNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDM-YSKCGSI-- 238 (548)
Q Consensus 162 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~-y~~~g~~-- 238 (548)
..|++++|+..|++..... +.+...+..+...+...|++++|...++.+.+.... +...+..+..+ |...|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE---NAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCCC
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhcCCcch
Confidence 3455566666665555432 234455555566666666666666666666555433 55555566666 5566665
Q ss_pred HHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 239 DDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 239 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
++|...|+++.+ .+...|..+...|...|++++|+..|++..+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 666666665542 2345566666666666777777777776665
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.9e-05 Score=63.94 Aligned_cols=113 Identities=7% Similarity=-0.096 Sum_probs=71.2
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSAL 228 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 228 (548)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+.... +..++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT---FIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---chHHHHHH
Confidence 45567777777777777777777777766542 235556666666677777777777777777665433 56666667
Q ss_pred HHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHh
Q 038673 229 IDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAM 265 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 265 (548)
...|.+.|++++|.+.|++..+ .+...+..+...+..
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 7777777777777777666543 223344444444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=3.1e-05 Score=60.99 Aligned_cols=111 Identities=16% Similarity=0.086 Sum_probs=90.4
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 038673 253 VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEAL 332 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 332 (548)
+..|..+...+...|++++|+..|++.... .|+ +...+..+...+.+.|++++|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------------------~~~~~~~~a~~~~~~~~~~~A~ 58 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPH-----------------------NHVLYSNRSAAYAKKGDYQKAY 58 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCC-----------------------cHHHHHHHHHHHHhhccHHHHH
Confidence 456777888889999999999999998873 333 3456778888899999999999
Q ss_pred HHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 038673 333 KMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIY 388 (548)
Q Consensus 333 ~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 388 (548)
..+++.. ..| +...|..+..++...|+++.|...++++.+..|+++..+..+..+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 59 EDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9998773 344 4777888889999999999999999999999999887777666543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00029 Score=67.18 Aligned_cols=227 Identities=8% Similarity=-0.054 Sum_probs=136.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhccC-CcHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 038673 20 WTALIRGYILQGHLKDSISLYCSMRREGIGPV-SFTLSALFKACTEVL-DVSLGQQIHAQTILLGGFTSDLYVGNTMIGM 97 (548)
Q Consensus 20 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 97 (548)
|+.+-....+.+..++|+++++.++.. .|+ ..+|+.--..+...+ +++++..+++.+++.. +.+..+|+.-..+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wl 132 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 343333344455566788888877763 453 344665555555566 4777777777777764 6667777776666
Q ss_pred HHHc-C-ChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChh--------
Q 038673 98 YVKC-G-FLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPR-------- 167 (548)
Q Consensus 98 ~~~~-g-~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~-------- 167 (548)
+.+. + ++++++++++.+.+.|. +|..+|+--.-.+.+.|.++
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dp----------------------------kNy~AW~~R~wvl~~l~~~~~~~~~~~~ 184 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDP----------------------------KNYHTWAYLHWLYSHFSTLGRISEAQWG 184 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCT----------------------------TCHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhCC----------------------------CCHHHHHHHHHHHHHhccccccchhhHH
Confidence 6655 5 66666666666554322 23333333333333333333
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC-------hhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCH--
Q 038673 168 EAIEYFERMQYAGVETDYVTLVGVISACAQLGV-------IKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSI-- 238 (548)
Q Consensus 168 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~-- 238 (548)
++++.++++.+.. +-|...++.....+.+.+. ++++.+....++...+. +...|+-+-..+.+.|..
T Consensus 185 eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~---n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 185 SELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH---NVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCCCcc
Confidence 6777777776654 3355566665555555554 56777777777776654 777887776666665542
Q ss_pred ------------------HHHHHHHhcCCC---------CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 239 ------------------DDAYRIFVGMKQ---------RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 239 ------------------~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
........++.. +....+..++..|...|+.++|.++++.+.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 334444444432 34566777888899999999999999998653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.18 E-value=8.8e-06 Score=67.46 Aligned_cols=116 Identities=9% Similarity=-0.032 Sum_probs=84.9
Q ss_pred HHhcCCCC---ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHH
Q 038673 244 IFVGMKQR---NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVD 320 (548)
Q Consensus 244 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~ 320 (548)
.|+++... +...+..+...+...|++++|+..|++... ..|+ +...|..+..
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~-----------------------~~~~~~~lg~ 60 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHY-----------------------DARYFLGLGA 60 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT-----------------------CHHHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCc-----------------------cHHHHHHHHH
Confidence 44444443 234555666778888999999999988877 3444 3455777888
Q ss_pred HHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHH
Q 038673 321 LLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIIL 384 (548)
Q Consensus 321 ~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 384 (548)
+|.+.|++++|...|++.. ..|+ +..|..+..++...|+++.|...+++++++.|+++......
T Consensus 61 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 61 CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 8888999999998888763 3454 66777788889999999999999999999999887554443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.7e-05 Score=64.08 Aligned_cols=110 Identities=12% Similarity=0.019 Sum_probs=80.8
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALK 333 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 333 (548)
..|..+...+...|++++|+..|++.++. .|+ +...|..+..+|.+.|++++|+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~-----------------------~~~~~~~~a~~~~~~~~~~~A~~ 59 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APE-----------------------DARGYSNRAAALAKLMSFPEAIA 59 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCC-----------------------ChHHHHHHHHHHHHhcCHHHHHH
Confidence 34666667777888888888888887763 333 33557777788888888888888
Q ss_pred HHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCCchhHHHHHHHH
Q 038673 334 MVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELE------PDKIGNYIILSNIY 388 (548)
Q Consensus 334 ~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 388 (548)
.+++.. ..|+ ...|..+..++...|++++|...++++++++ |.+......+..+.
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 887763 3454 6677777788888999999999999998888 77766666555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=2.2e-05 Score=63.23 Aligned_cols=115 Identities=11% Similarity=-0.029 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+..+.+.... +...+..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~ 87 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA---YSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc---CHHHHHHHH
Confidence 3455666666666677777777766665542 234555566666666666677776666666665433 555666666
Q ss_pred HHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCC
Q 038673 230 DMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGR 268 (548)
Q Consensus 230 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 268 (548)
..|.+.|++++|...|++..+ .+...+..+...+...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 666666666666666665542 234445555555544443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.1e-05 Score=66.96 Aligned_cols=109 Identities=17% Similarity=0.051 Sum_probs=86.4
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 038673 252 NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEA 331 (548)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 331 (548)
+...|..+...+...|++++|+..|++.++. .|+ +...|..+..+|.+.|++++|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~-----------------------~~~~~~~l~~~~~~~g~~~~A 64 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APA-----------------------NPIYLSNRAAAYSASGQHEKA 64 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT-----------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCc-----------------------CHHHHHHHHHHHHHccCHHHH
Confidence 3456777777888888888888888888773 343 345677888888889999999
Q ss_pred HHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 332 LKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 332 ~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
+..|++.. +.|+ ...|..+..++...|+++.|...++++++++|++...+....
T Consensus 65 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 65 AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 98888774 4454 778888889999999999999999999999999887554443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.7e-05 Score=66.49 Aligned_cols=91 Identities=10% Similarity=-0.030 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDM 231 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~ 231 (548)
.|..+...+.+.|++++|+..|++..... +-+...+..+..++...|++++|...|+.+.+..+. +...+..+..+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~---~~~~~~~lg~~ 113 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN---DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS---CCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC---CcHHHHHHHHH
Confidence 44444444444444444444444444331 123333344444444444444444444444443322 33333344444
Q ss_pred HhcCCCHHHHHHHHh
Q 038673 232 YSKCGSIDDAYRIFV 246 (548)
Q Consensus 232 y~~~g~~~~A~~~~~ 246 (548)
|.+.|++++|...|+
T Consensus 114 ~~~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 114 QLRLKAPLKAKECFE 128 (151)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 444444444443333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.1e-05 Score=65.19 Aligned_cols=98 Identities=11% Similarity=0.001 Sum_probs=88.0
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHH
Q 038673 310 PSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN----GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIIL 384 (548)
Q Consensus 310 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 384 (548)
.+...+..+...+...|++++|.+.|++.. ..|+ ...|..+..++...|++++|...++++++..|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 356788889999999999999999999873 5677 57777888899999999999999999999999999999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhC
Q 038673 385 SNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 385 ~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
+.+|...|++++|.+.+++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999988753
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.2e-05 Score=65.32 Aligned_cols=94 Identities=6% Similarity=-0.095 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch-------hHHH
Q 038673 313 DHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG-------NYII 383 (548)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~ 383 (548)
..+..+...+.+.|++++|++.|++.- +.|+ ...|..+-.++...|++++|+..+++++++.|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 457778899999999999999998874 4565 778888889999999999999999999998887643 6777
Q ss_pred HHHHHHHcCCchHHHHHHHHHHh
Q 038673 384 LSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 384 l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88899999999999999988764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.10 E-value=2.8e-05 Score=75.00 Aligned_cols=130 Identities=14% Similarity=0.028 Sum_probs=104.9
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--------------HhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD--------------YVTLVGVISACAQLGVIKYANWVCEIAEGS 214 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 214 (548)
+...|..+...|.+.|++++|+..|++.....-... ...+..+..++.+.|++++|...++.+++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455788888888999999999999988877531111 467888888899999999999999999887
Q ss_pred CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 038673 215 GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAA-IQLFGDMVK 281 (548)
Q Consensus 215 ~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A-~~l~~~m~~ 281 (548)
.+. +..++..+..+|...|++++|...|++..+ .+...+..+...+...|+.++| ..+|+.|..
T Consensus 226 ~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 DSN---NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 644 888899999999999999999999988763 4567788888888889998888 457777654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=6.7e-05 Score=62.02 Aligned_cols=116 Identities=11% Similarity=-0.070 Sum_probs=90.3
Q ss_pred CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHH
Q 038673 251 RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEE 330 (548)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 330 (548)
.+...|..+...+...|++++|+..|++..+ ..|+... ....+..+...|...|++++
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~--------------------~~~~~~~~a~~~~~~~~~~~ 83 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQD--------------------QAVLHRNRAACHLKLEDYDK 83 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHH--------------------HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchH--------------------HHHHHHHHHHHHHHHccHHH
Confidence 3556778888888889999999999998887 3454311 03457778888889999999
Q ss_pred HHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 038673 331 ALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIY 388 (548)
Q Consensus 331 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 388 (548)
|...+++.. ..| +...|..+..++...|+++.|...++++++..|++...+..+..+.
T Consensus 84 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 84 AETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 999988763 344 4677888888999999999999999999999999887766665544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00022 Score=67.71 Aligned_cols=97 Identities=18% Similarity=0.182 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHH-----------cCCHHHHHHHH
Q 038673 267 GRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGR-----------AGCLEEALKMV 335 (548)
Q Consensus 267 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~-----------~g~~~~A~~~~ 335 (548)
+.++++++.+.+.+. ..|+..+ .|+-+-..+.+ .+.++++++.+
T Consensus 207 ~~~~eEle~~~~ai~--~~P~d~S-----------------------aW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~ 261 (331)
T 3dss_A 207 NVLLKELELVQNAFF--TDPNDQS-----------------------AWFYHRWLLGAGSGRCELSVEKSTVLQSELESC 261 (331)
T ss_dssp HHHHHHHHHHHHHHH--HSTTCHH-----------------------HHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hCCCCHH-----------------------HHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence 457889999999887 4565443 23322222222 24577888888
Q ss_pred HhCC-CCCChhHHHHHHH-----HHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 038673 336 EKMP-VEPNGGVWGALLG-----ACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389 (548)
Q Consensus 336 ~~m~-~~p~~~~~~~ll~-----~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 389 (548)
+++- ..||. .|..+-. +....+..++....+.++.+++|...+-|.-+...+.
T Consensus 262 ~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 262 KELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 320 (331)
T ss_dssp HHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 7774 56774 4543222 2224677888999999999999998877777665443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00063 Score=64.50 Aligned_cols=216 Identities=13% Similarity=0.042 Sum_probs=145.2
Q ss_pred HHCCChh-HHHHHHHHHHHCCCCCCHhh-HHHHHHHHHccCC----------hhHHHHHHHHHHHcCCCCCChHhHHHHH
Q 038673 161 VQNAKPR-EAIEYFERMQYAGVETDYVT-LVGVISACAQLGV----------IKYANWVCEIAEGSGFGPINNVVVGSAL 228 (548)
Q Consensus 161 ~~~g~~~-~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~p~~~~~~~~~l 228 (548)
.+.|.++ +|+.++..+... .|+..| ++.--..+...+. ++++..+++.+....+. +..+|+.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK---ny~aW~hR 114 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---SYGTWHHR 114 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC---CHHHHHHH
Confidence 4455554 788888888764 454433 3332222222222 57888888888887765 88888887
Q ss_pred HHHHhcCC--CHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcC
Q 038673 229 IDMYSKCG--SIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGR-AHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302 (548)
Q Consensus 229 i~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 302 (548)
.-.+.+.| .++++..+++.+.+ +|..+|+--.-.+...|. ++++++.+.++++. .|+
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~--------------- 177 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFS--------------- 177 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSC---------------
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCC---------------
Confidence 77777777 48999999988874 566778777777777787 68999999999984 333
Q ss_pred CccCCCCcCHHHHHHHHHHHHHc--------------CCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhc---------
Q 038673 303 LKCYGVSPSTDHYACMVDLLGRA--------------GCLEEALKMVEKMP-VEPN-GGVWGALLGACQIH--------- 357 (548)
Q Consensus 303 ~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~--------- 357 (548)
|...|+....++.+. +.++++++.+.+.- ..|+ ...|+-+-..+...
T Consensus 178 --------N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~ 249 (331)
T 3dss_A 178 --------NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVE 249 (331)
T ss_dssp --------CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHH
T ss_pred --------CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchH
Confidence 223344433333332 45788888887763 4454 77777655555444
Q ss_pred --CCHHHHHHHHHHHhhcCCCCchhHHHHHHHH---HHcCCchHHHHHHHHHHh
Q 038673 358 --RNPEIAQIAANHLFELEPDKIGNYIILSNIY---ASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 358 --~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~ 406 (548)
+.++.+.+.+++++++.|++.-.+..++... ...|..+++...+.++.+
T Consensus 250 ~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 250 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4578999999999999999855444443322 235677788888888865
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.7e-05 Score=66.05 Aligned_cols=94 Identities=12% Similarity=-0.070 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC--------h-----hHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----
Q 038673 313 DHYACMVDLLGRAGCLEEALKMVEKMP-VEPN--------G-----GVWGALLGACQIHRNPEIAQIAANHLFEL----- 373 (548)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~--------~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 373 (548)
..+......+.+.|++++|++.|++.- +.|+ . ..|..+-.++...|++++|...+++.+++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345566778889999999999998773 3344 2 28888889999999999999999999999
Q ss_pred --CCCCchhH----HHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 374 --EPDKIGNY----IILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 374 --~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
+|++...| ...+.++...|++++|+..|++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999 9999999999999999999998865
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.03 E-value=5e-05 Score=76.97 Aligned_cols=116 Identities=15% Similarity=0.041 Sum_probs=77.5
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCH
Q 038673 193 SACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRA 269 (548)
Q Consensus 193 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 269 (548)
..+.+.|++++|.+.++++++.... +..++..+..+|.+.|++++|.+.|++..+ .+..+|..+..+|...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3456677888888888888776543 677788888888888888888888877653 3456777777778888888
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 038673 270 HAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDL--LGRAGCLEEALKMVE 336 (548)
Q Consensus 270 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 336 (548)
++|++.|++..+. .|+. ...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~--~p~~-----------------------~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV--KPHD-----------------------KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH--STTC-----------------------TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh--CCCC-----------------------HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888877763 3332 1234444444 667777777777776
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.01 E-value=6.2e-05 Score=58.62 Aligned_cols=102 Identities=20% Similarity=0.103 Sum_probs=80.1
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 038673 252 NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEA 331 (548)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 331 (548)
+...|..+...+...|++++|+..|++..+. .|+ +...+..+...+...|++++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~-----------------------~~~~~~~~a~~~~~~~~~~~A 59 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPE-----------------------ESKYWLMKGKALYNLERYEEA 59 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCC-----------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcC-----------------------CHHHHHHHHHHHHHccCHHHH
Confidence 4566777788888888888998888888773 233 334577778888889999999
Q ss_pred HHHHHhCC-CCC---ChhHHHHHHHHHHhc-CCHHHHHHHHHHHhhcCCCCc
Q 038673 332 LKMVEKMP-VEP---NGGVWGALLGACQIH-RNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 332 ~~~~~~m~-~~p---~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~p~~~ 378 (548)
.+.+++.. ..| +...|..+...+... |++++|.+.++++.+..|+++
T Consensus 60 ~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 60 VDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 98888763 344 467788888889999 999999999999999888764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.1e-05 Score=71.23 Aligned_cols=129 Identities=12% Similarity=-0.037 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCC--------------HhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGV-ETD--------------YVTLVGVISACAQLGVIKYANWVCEIAEGS 214 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 214 (548)
...+..+...+...|++++|+..|++.....- .|+ ...+..+..++...|++++|...++.+++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34566666677777777777777777765321 110 145666666777777777777777777776
Q ss_pred CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 038673 215 GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAI-QLFGDMVK 281 (548)
Q Consensus 215 ~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~ 281 (548)
... +..++..+..+|...|++++|...|++..+ .+...+..+...+...++..++. ..|..|..
T Consensus 118 ~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 118 DKN---NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp STT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred Ccc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 533 667777777777777777777777776642 34556666666666666666555 44555544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.5e-05 Score=62.19 Aligned_cols=93 Identities=15% Similarity=0.096 Sum_probs=79.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-CCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---chhHHHHHH
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP-VEPNG----GVWGALLGACQIHRNPEIAQIAANHLFELEPDK---IGNYIILSN 386 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 386 (548)
+..+...+.+.|++++|.+.|++.. ..|+. ..+..+..++...|+++.|...++++++..|++ +..+..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3446677889999999999999874 34543 477777788999999999999999999999998 777999999
Q ss_pred HHHHcCCchHHHHHHHHHHhC
Q 038673 387 IYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 387 ~~~~~g~~~~a~~~~~~m~~~ 407 (548)
+|...|++++|...++.+.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999988754
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.98 E-value=4.4e-05 Score=61.81 Aligned_cols=96 Identities=11% Similarity=0.004 Sum_probs=52.7
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-C-------hhhhHHH
Q 038673 190 GVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--R-N-------VFSYSSM 259 (548)
Q Consensus 190 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~-------~~~~~~l 259 (548)
.+...+.+.|++++|...|+.+++..+. +..+++.+..+|.+.|++++|.+.|++..+ | + ..+|..+
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3444444455555555555555444322 455555555555555555555555554432 1 0 1245556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh
Q 038673 260 ILGFAMHGRAHAAIQLFGDMVKTETKPNGVT 290 (548)
Q Consensus 260 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 290 (548)
...+...|++++|++.|++.+. ..||..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~--~~~~~~~ 118 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS--EFRDPEL 118 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCcCHHH
Confidence 6677778888888888887776 3455443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.96 E-value=3.5e-05 Score=62.08 Aligned_cols=96 Identities=11% Similarity=0.045 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-------chhHH
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDK-------IGNYI 382 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 382 (548)
...+..+...+...|++++|...|++.. ..| +...+..+...+...|+++.|...++++.+..|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3567788899999999999999998873 334 57778888889999999999999999999987766 77899
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 383 ILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 383 ~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
.++.+|...|++++|.+.++...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999988763
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.92 E-value=3.7e-05 Score=65.19 Aligned_cols=96 Identities=9% Similarity=-0.023 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC-C------------------CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMP-V------------------EPN-GGVWGALLGACQIHRNPEIAQIAANHLF 371 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~------------------~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 371 (548)
...+......+.+.|++++|...|++.. . .|. ...|..+..++...|+++.|...+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3457778889999999999999998763 2 222 3567777789999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 372 ELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 372 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
+++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999988653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00015 Score=59.01 Aligned_cols=96 Identities=14% Similarity=-0.074 Sum_probs=50.0
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSAL 228 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 228 (548)
+...|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...++.+.+.... +...+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch---hHHHHHHH
Confidence 44555555555666666666666665555432 223444555555555555555555555555554422 44455555
Q ss_pred HHHHhcCCCHHHHHHHHhcC
Q 038673 229 IDMYSKCGSIDDAYRIFVGM 248 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~~ 248 (548)
...|...|++++|...|++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 55555555555555544443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.91 E-value=9e-06 Score=64.82 Aligned_cols=84 Identities=10% Similarity=0.028 Sum_probs=70.0
Q ss_pred HcCCHHHHHHHHHhCC-C---CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHH
Q 038673 324 RAGCLEEALKMVEKMP-V---EPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVS 398 (548)
Q Consensus 324 ~~g~~~~A~~~~~~m~-~---~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 398 (548)
..|++++|+..|++.. . .|+ ...|..+..++...|++++|...++++++.+|+++..+..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4688899999998874 3 254 5677788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 038673 399 RVRRLLKMT 407 (548)
Q Consensus 399 ~~~~~m~~~ 407 (548)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.9e-05 Score=77.44 Aligned_cols=129 Identities=10% Similarity=0.018 Sum_probs=101.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC---CCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038673 262 GFAMHGRAHAAIQLFGDMVKTE---TKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKM 338 (548)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 338 (548)
.+..+|++++|+.++++.++.. +.|+... ...+++.|..+|...|++++|+.++++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~--------------------~a~~~~nLa~~y~~~g~~~eA~~~~~~a 377 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLY--------------------VLRLLSIASEVLSYLQAYEEASHYARRM 377 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHH--------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHH--------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4667899999999999887531 2233221 2357889999999999999999998876
Q ss_pred C---------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCch---hHHHHHHHHHHcCCchHHHHH
Q 038673 339 P---------VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFE-----LEPDKIG---NYIILSNIYASAGMWDDVSRV 400 (548)
Q Consensus 339 ~---------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~ 400 (548)
. ..|+ ..+++.|...|...|++++|+.+++++++ +.|++|. ....|..++...|++++|+.+
T Consensus 378 L~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~ 457 (490)
T 3n71_A 378 VDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFM 457 (490)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 3455 56788888999999999999999999887 6777764 445778888899999999999
Q ss_pred HHHHHhCCCc
Q 038673 401 RRLLKMTGLK 410 (548)
Q Consensus 401 ~~~m~~~g~~ 410 (548)
+.+++++-..
T Consensus 458 ~~~~~~~~~~ 467 (490)
T 3n71_A 458 YHKMREAALN 467 (490)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999875543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.90 E-value=6e-05 Score=76.03 Aligned_cols=139 Identities=12% Similarity=-0.010 Sum_probs=103.6
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh----HHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCH
Q 038673 253 VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVT----FIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCL 328 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 328 (548)
...|..+...|.+.|++++|+..|++.++. .|+... ...-+. ......|..+..+|.+.|++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~------------~~~~~~~~nla~~~~~~g~~ 333 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASE------------SFLLAAFLNLAMCYLKLREY 333 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHH------------HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHH------------HHHHHHHHHHHHHHHHhcCH
Confidence 346777888888899999999999988873 333210 000000 00135688889999999999
Q ss_pred HHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH-HHHHHH
Q 038673 329 EEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSR-VRRLLK 405 (548)
Q Consensus 329 ~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~ 405 (548)
++|+..+++.. +.| +...|..+-.++...|+++.|...|+++++++|++..++..+..++.+.|+++++.+ .++.|.
T Consensus 334 ~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 334 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998874 445 477888888999999999999999999999999999999999999999999988874 455554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00011 Score=73.41 Aligned_cols=93 Identities=6% Similarity=-0.109 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC-------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCC----
Q 038673 313 DHYACMVDLLGRAGCLEEALKMVEKMP-------VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELE---PDK---- 377 (548)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---p~~---- 377 (548)
.++..+...|...|++++|..++++.. .+|. ..++..+...|...|++++|...+++.+... ++.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 345566667777777777777666541 1122 3455556667777777777777777666522 211
Q ss_pred chhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 378 IGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 378 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
...+..++..+...|++++|...+.+..
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1345555666666777777766665553
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.88 E-value=6.1e-05 Score=60.57 Aligned_cols=110 Identities=7% Similarity=-0.035 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALK 333 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 333 (548)
..|..+...+...|++++|+..|++.... .|+ +...+..+...|...|++++|..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~-----------------------~~~~~~~la~~~~~~~~~~~A~~ 59 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPT-----------------------NMTYITNQAAVYFEKGDYNKCRE 59 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCc-----------------------cHHHHHHHHHHHHHhccHHHHHH
Confidence 46777888899999999999999999874 233 34567788899999999999999
Q ss_pred HHHhCC-C----CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 038673 334 MVEKMP-V----EPN----GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389 (548)
Q Consensus 334 ~~~~m~-~----~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 389 (548)
.+++.. . .++ ..+|..+..++...|+++.|...++++.+..| ++.....+..+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 60 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 998773 1 222 66777788899999999999999999999988 4556655555443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00027 Score=56.76 Aligned_cols=108 Identities=15% Similarity=0.056 Sum_probs=83.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038673 256 YSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMV 335 (548)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 335 (548)
+..+...+...|++++|+..|++..+. .|+... ....+..+..++.+.|++++|...|
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~--------------------~~~~~~~lg~~~~~~~~~~~A~~~~ 62 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL--YPNGVY--------------------TPNALYWLGESYYATRNFQLAEAQF 62 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTT--------------------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcc--------------------cHHHHHHHHHHHHHhccHHHHHHHH
Confidence 445667788899999999999999874 333210 1145677888999999999999999
Q ss_pred HhCC-CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 336 EKMP-VEPN----GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 336 ~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
++.. ..|+ ...+..+..++...|+++.|...++++++..|+++.......
T Consensus 63 ~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 63 RDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 8873 3344 455777778899999999999999999999999875544443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.82 E-value=5.5e-05 Score=63.41 Aligned_cols=132 Identities=11% Similarity=0.022 Sum_probs=82.8
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 038673 255 SYSSMILGFAMHGRAHAAIQLFGDMVKTETK-PNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALK 333 (548)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 333 (548)
++..+...|...|++++|+..+++..+.... ++... ....+..+...+...|++++|.+
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------------------~~~~~~~l~~~~~~~g~~~~A~~ 70 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--------------------ERIAYSNLGNAYIFLGEFETASE 70 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--------------------HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH--------------------HHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455555666666666666666665542100 11000 01345666677777777777777
Q ss_pred HHHhCC----CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------CCchhHHHHHHHHHHcCCchHHHH
Q 038673 334 MVEKMP----VEPN----GGVWGALLGACQIHRNPEIAQIAANHLFELEP------DKIGNYIILSNIYASAGMWDDVSR 399 (548)
Q Consensus 334 ~~~~m~----~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~ 399 (548)
.+++.. ..++ ...+..+...+...|+++.|...+++.++..+ .....+..++.+|...|++++|.+
T Consensus 71 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 150 (164)
T 3ro3_A 71 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 150 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHH
Confidence 776542 1111 34555566777888888888888888776321 123467788899999999999999
Q ss_pred HHHHHHh
Q 038673 400 VRRLLKM 406 (548)
Q Consensus 400 ~~~~m~~ 406 (548)
.+++..+
T Consensus 151 ~~~~a~~ 157 (164)
T 3ro3_A 151 FAEKHLE 157 (164)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=8.5e-05 Score=59.50 Aligned_cols=92 Identities=13% Similarity=-0.108 Sum_probs=45.2
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMY 232 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y 232 (548)
+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++..+. +...+..+...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHH
Confidence 3344445555555555555555554432 223444444445555555555555555555554432 444445555555
Q ss_pred hcCCCHHHHHHHHhcC
Q 038673 233 SKCGSIDDAYRIFVGM 248 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~~ 248 (548)
.+.|++++|...|++.
T Consensus 96 ~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 96 TNEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 5555555555544443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00052 Score=68.35 Aligned_cols=195 Identities=9% Similarity=-0.031 Sum_probs=116.5
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCC----------------HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCCh
Q 038673 158 TGYVQNAKPREAIEYFERMQYAGVETD----------------YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINN 221 (548)
Q Consensus 158 ~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 221 (548)
..+.+.|++++|++.|.+..+..-... ...+..+...|...|++++|.+.+..+.+.-... .+
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~-~~ 90 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF-AK 90 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS-CH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-cc
Confidence 345566777777777766655321110 1125566677777777777777776655421110 01
Q ss_pred ----HhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CC----hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 038673 222 ----VVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----RN----VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNG 288 (548)
Q Consensus 222 ----~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 288 (548)
..+.+.+...+...|+++.|..++..... .+ ..++..+...|...|++++|..++++....-...+.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 12344445555566777777777765531 11 235667777888888888888888877653111111
Q ss_pred hhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-----C-CCC---hhHHHHHHHHHHhcCC
Q 038673 289 VTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-----V-EPN---GGVWGALLGACQIHRN 359 (548)
Q Consensus 289 ~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~-~p~---~~~~~~ll~~~~~~~~ 359 (548)
. ......|..++..|...|++++|..++++.. . .|. ...+..+...+...++
T Consensus 171 ~-------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 231 (434)
T 4b4t_Q 171 K-------------------PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD 231 (434)
T ss_dssp S-------------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred c-------------------hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh
Confidence 1 1123467778888888888888888877652 1 121 2344455566777888
Q ss_pred HHHHHHHHHHHhh
Q 038673 360 PEIAQIAANHLFE 372 (548)
Q Consensus 360 ~~~a~~~~~~~~~ 372 (548)
++.|...+....+
T Consensus 232 y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 232 YKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887777765
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0002 Score=69.95 Aligned_cols=135 Identities=10% Similarity=0.005 Sum_probs=98.8
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCc-CHHHHHHHHHHHHHcCCHHHHHH
Q 038673 255 SYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSP-STDHYACMVDLLGRAGCLEEALK 333 (548)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 333 (548)
.|..+...+.+.|++++|+..|++.++. .|+.. . . ..........| +...|..+..+|.+.|++++|++
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~---~---~--~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 294 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR---A---A--AEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD 294 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH---H---H--SCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc---c---c--cChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 4666677778888888888888877651 00000 0 0 00000000111 34568889999999999999999
Q ss_pred HHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 038673 334 MVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSR 399 (548)
Q Consensus 334 ~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 399 (548)
.+++.. ..|+ ...|..+..++...|++++|...+++++++.|++...+..+..++...++.+++.+
T Consensus 295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 998874 5565 77888888999999999999999999999999999999999999888887777654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0001 Score=62.36 Aligned_cols=118 Identities=14% Similarity=0.048 Sum_probs=82.9
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCH
Q 038673 255 SYSSMILGFAMHGRAHAAIQLFGDMVKT------ETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCL 328 (548)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 328 (548)
.+......+.+.|++++|+..|.+.+.. .-.|+...+..+ -+.+...|..+..+|.+.|++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~nla~~~~~~~~~ 79 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVEL-------------DRKNIPLYANMSQCYLNIGDL 79 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHH-------------HHTHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHH-------------HHHHHHHHHHHHHHHHhcCcH
Confidence 4555566677777777777777776652 001221111000 011345688889999999999
Q ss_pred HHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc-hhHHHHH
Q 038673 329 EEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKI-GNYIILS 385 (548)
Q Consensus 329 ~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~ 385 (548)
++|+..+++.. +.|+ ...|..+..++...|+++.|...++++++++|+++ .....+.
T Consensus 80 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 80 HEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999998874 4555 77888888999999999999999999999999987 4444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.73 E-value=9.4e-05 Score=61.91 Aligned_cols=130 Identities=12% Similarity=-0.000 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHccCChhHHHHHHHHHHHcC----CCCCCh
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQYAGV-ETD----YVTLVGVISACAQLGVIKYANWVCEIAEGSG----FGPINN 221 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~p~~~ 221 (548)
.++..+...|...|++++|+..+++.....- .++ ..++..+...+...|++++|...++.+.+.. ..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA-VE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-HH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH-HH
Confidence 3566777777788888888888877654210 011 1356667777788888888888887765432 111 12
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CC----hhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 222 VVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----RN----VFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 222 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
..++..+...|...|++++|...+++..+ .+ ...+..+...|...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55677888888899999998888877652 11 24577778888899999999999988765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0015 Score=67.43 Aligned_cols=167 Identities=7% Similarity=-0.011 Sum_probs=115.0
Q ss_pred hHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCC----------HHHHHHHHhcCCC---CChhhhHHHHHHHHhcC-
Q 038673 202 KYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGS----------IDDAYRIFVGMKQ---RNVFSYSSMILGFAMHG- 267 (548)
Q Consensus 202 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g- 267 (548)
++|.+.++.+++.++. +..+|+.--..+.+.|+ ++++.+.++.+.+ ++..+|+--.-.+.+.|
T Consensus 46 eeal~~~~~~l~~nP~---~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 46 ESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp HHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHCch---hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 4556666666665544 55555555555555554 6667777766653 34556666556666667
Q ss_pred -CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcC-CHHHHHHHHHhCC-CCC-C
Q 038673 268 -RAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAG-CLEEALKMVEKMP-VEP-N 343 (548)
Q Consensus 268 -~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~-~~p-~ 343 (548)
+++++++.++++.+. .|. +..+|+.-..++.+.| .++++++.++++- ..| |
T Consensus 123 ~~~~~el~~~~k~l~~--d~~-----------------------N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n 177 (567)
T 1dce_A 123 PNWARELELCARFLEA--DER-----------------------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN 177 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC
T ss_pred ccHHHHHHHHHHHHhh--ccc-----------------------cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC
Confidence 668888888888873 333 3345666666666777 7888888888774 444 3
Q ss_pred hhHHHHHHHHHHhc--------------CCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchH
Q 038673 344 GGVWGALLGACQIH--------------RNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDD 396 (548)
Q Consensus 344 ~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 396 (548)
...|+.....+... +.++++.+.+++++..+|++..+|..+..++.+.|+.++
T Consensus 178 ~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 178 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 66777766655542 457899999999999999999999999999999888555
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.70 E-value=9.3e-05 Score=58.77 Aligned_cols=95 Identities=11% Similarity=0.004 Sum_probs=73.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC
Q 038673 265 MHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN 343 (548)
Q Consensus 265 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~ 343 (548)
..|++++|+..|++.++.+ ++... +...+..+..+|.+.|++++|.+.|++.. ..|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~--~~~p~--------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 59 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG--LQGKD--------------------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN 59 (117)
T ss_dssp -----CCCHHHHHHHHSSC--CCHHH--------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCcHHHHHHHHHHHHHcC--CCCcc--------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4688899999999998843 22111 34568888999999999999999999874 4455
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 038673 344 -GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNY 381 (548)
Q Consensus 344 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 381 (548)
...+..+..++...|++++|...++++++..|+++...
T Consensus 60 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 60 HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ 98 (117)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 77788888999999999999999999999999887543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00011 Score=57.21 Aligned_cols=91 Identities=11% Similarity=-0.068 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------chhHH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDK------IGNYI 382 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 382 (548)
+...+..+...+.+.|++++|.+.|++.. ..| +...|..+..++...|++++|...+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45678888899999999999999998873 445 47788888899999999999999999999999998 66777
Q ss_pred HHHHHHHHcCCchHHHHHH
Q 038673 383 ILSNIYASAGMWDDVSRVR 401 (548)
Q Consensus 383 ~l~~~~~~~g~~~~a~~~~ 401 (548)
.++.++...|++++|.+.+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 8888888888777766544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.66 E-value=9.1e-05 Score=71.43 Aligned_cols=140 Identities=10% Similarity=-0.047 Sum_probs=74.4
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH------HHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCC
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFI------GVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGC 327 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~------~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 327 (548)
..|..+...+...|++++|+..|++.+. ..|+...+. ..+... ....|..+..+|.+.|+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l------------~~~~~~nla~~~~~~g~ 245 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAV------------KNPCHLNIAACLIKLKR 245 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHH------------HTHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHH------------HHHHHHHHHHHHHHcCC
Confidence 3455666677777888888888888776 334433210 000000 01257788888999999
Q ss_pred HHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH-HHcCCchHHHHHHHHH
Q 038673 328 LEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIY-ASAGMWDDVSRVRRLL 404 (548)
Q Consensus 328 ~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~~~~~~m 404 (548)
+++|+..+++.. ..| +...|..+..++...|+++.|...++++++++|+++..+..|..+. ...+..+.+.++++.|
T Consensus 246 ~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 246 YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998773 445 4778888889999999999999999999999999888888887774 3456677777788777
Q ss_pred HhC
Q 038673 405 KMT 407 (548)
Q Consensus 405 ~~~ 407 (548)
...
T Consensus 326 l~~ 328 (338)
T 2if4_A 326 FKG 328 (338)
T ss_dssp ---
T ss_pred hCC
Confidence 543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00031 Score=70.81 Aligned_cols=127 Identities=12% Similarity=0.014 Sum_probs=102.1
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC----------------HhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD----------------YVTLVGVISACAQLGVIKYANWVCEIAEG 213 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 213 (548)
...|..+...|.+.|++++|+..|++..+.. |+ ...|..+..++.+.|++++|...++.+++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4578888889999999999999999887642 22 46788888889999999999999999998
Q ss_pred cCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHH-HHHHHHH
Q 038673 214 SGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQ-LFGDMVK 281 (548)
Q Consensus 214 ~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~-l~~~m~~ 281 (548)
.... +...+..+..+|.+.|++++|...|+++.+ .+...|..+...+...++.++|.. +++.|..
T Consensus 346 ~~p~---~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 346 LDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cCCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7754 888999999999999999999999998764 355678888888888888887764 5666654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00031 Score=52.32 Aligned_cols=82 Identities=21% Similarity=0.257 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIY 388 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 388 (548)
+...+..+...+...|++++|...+++.. ..| +...|..+..++...|+++.|...++++++.+|+++..+..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34567778888999999999999998763 334 4677888888899999999999999999999999988888888887
Q ss_pred HHcC
Q 038673 389 ASAG 392 (548)
Q Consensus 389 ~~~g 392 (548)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00023 Score=68.51 Aligned_cols=126 Identities=12% Similarity=-0.012 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHh------------------hHHHHHHHHHccCChhHHHHHHHHHH
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYV------------------TLVGVISACAQLGVIKYANWVCEIAE 212 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------------------t~~~ll~~~~~~g~~~~a~~~~~~~~ 212 (548)
..|..+...+.+.|++++|+..|++.... .|+.. .|..+..++.+.|++++|...++.++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777777888888888888877653 34433 67788888999999999999999999
Q ss_pred HcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC---ChhhhHHHHHH-HHhcCCHHHHHHHHHHHHH
Q 038673 213 GSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR---NVFSYSSMILG-FAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 213 ~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~ 281 (548)
+.... +..++..+..+|...|++++|...|++..+. +...+..+... ....+..+++..+|+.|..
T Consensus 258 ~~~p~---~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 258 TEEEK---NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred HhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 87644 8899999999999999999999999998752 34455555544 3345677888889988876
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00027 Score=54.27 Aligned_cols=64 Identities=23% Similarity=0.174 Sum_probs=58.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 343 NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 343 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
+...|..+...+...|++++|...++++++.+|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4677888889999999999999999999999999999999999999999999999999988764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00048 Score=67.17 Aligned_cols=89 Identities=9% Similarity=-0.062 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
...|+.+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|...++.+.+.... +..++..+.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~---~~~~~~~l~ 348 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE---DKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Confidence 3455566666666666666666666655432 223445555555666666666666666666555432 455555555
Q ss_pred HHHhcCCCHHHHH
Q 038673 230 DMYSKCGSIDDAY 242 (548)
Q Consensus 230 ~~y~~~g~~~~A~ 242 (548)
..+.+.++.+++.
T Consensus 349 ~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 349 KVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0006 Score=53.66 Aligned_cols=77 Identities=10% Similarity=-0.009 Sum_probs=65.7
Q ss_pred HHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 330 EALKMVEKM-PVEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 330 ~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
+|.+.|++. ...|+ ...|..+...+...|+++.|...++++++.+|+++..+..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555544 23454 778888889999999999999999999999999999999999999999999999999998865
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00022 Score=55.50 Aligned_cols=97 Identities=11% Similarity=0.005 Sum_probs=69.8
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCC------hh
Q 038673 16 NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSD------LY 89 (548)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~------~~ 89 (548)
+...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|...++..++.. +.+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 34567788888888899999999888888742 2356777788888888888888888888888754 333 44
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCC
Q 038673 90 VGNTMIGMYVKCGFLGCSRKVFDEMP 115 (548)
Q Consensus 90 ~~~~li~~~~~~g~~~~A~~~~~~m~ 115 (548)
.+..+..++...|+.+.|...|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 55666666666666666666555544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00038 Score=70.22 Aligned_cols=116 Identities=11% Similarity=-0.017 Sum_probs=88.7
Q ss_pred HHHHHcCCHHHHHHHHHhCC---------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCc---hhH
Q 038673 320 DLLGRAGCLEEALKMVEKMP---------VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFE-----LEPDKI---GNY 381 (548)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~m~---------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~ 381 (548)
..+...|++++|+.++++.. ..|+ ..+++.|..+|...|++++|+.+++++++ +.|+++ .++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 44667899999999987651 2344 56788888999999999999999999887 455554 578
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHH
Q 038673 382 IILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQA 454 (548)
Q Consensus 382 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 454 (548)
+.|+.+|...|++++|..++++..+--.. .--..||...++...+.....++..
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~-------------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLV-------------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH-------------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999987642111 1124688888888777777666553
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00015 Score=60.17 Aligned_cols=85 Identities=14% Similarity=0.035 Sum_probs=70.1
Q ss_pred HHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCC----------HHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 038673 323 GRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRN----------PEIAQIAANHLFELEPDKIGNYIILSNIYAS 390 (548)
Q Consensus 323 ~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 390 (548)
.+.+++++|.+.+++.- ..|+ ...|..+-.++...++ +++|+..++++++++|++..+|..++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 45678889998888763 4554 6777777777776655 4699999999999999999999999999998
Q ss_pred cC-----------CchHHHHHHHHHHhC
Q 038673 391 AG-----------MWDDVSRVRRLLKMT 407 (548)
Q Consensus 391 ~g-----------~~~~a~~~~~~m~~~ 407 (548)
.| ++++|.+.|++..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 75 899999999998763
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0015 Score=49.25 Aligned_cols=69 Identities=10% Similarity=0.009 Sum_probs=58.8
Q ss_pred CChhHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 038673 342 PNGGVWGALLGACQIHRN---PEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 342 p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 410 (548)
+|+..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|...++++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456777777777654444 699999999999999999999999999999999999999999999876543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.003 Score=52.51 Aligned_cols=93 Identities=13% Similarity=-0.048 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--------H-----hhHHHHHHHHHccCChhHHHHHHHHHHHc----
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETD--------Y-----VTLVGVISACAQLGVIKYANWVCEIAEGS---- 214 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---- 214 (548)
.+......+.+.|++++|+..|++..+. .|+ . ..|..+..++.+.|++++|...++..++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4556666777888888888888877653 232 1 14555555556666666666666555553
Q ss_pred -CCCCCChHhHH----HHHHHHHhcCCCHHHHHHHHhc
Q 038673 215 -GFGPINNVVVG----SALIDMYSKCGSIDDAYRIFVG 247 (548)
Q Consensus 215 -~~~p~~~~~~~----~~li~~y~~~g~~~~A~~~~~~ 247 (548)
.+.| .+...| .....++...|++++|...|++
T Consensus 91 ~e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 91 GELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp CCTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 0012 244444 4444444444444444444443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00055 Score=67.96 Aligned_cols=117 Identities=14% Similarity=0.062 Sum_probs=90.0
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC------CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCc---h
Q 038673 318 MVDLLGRAGCLEEALKMVEKMP------VEPN----GGVWGALLGACQIHRNPEIAQIAANHLFE-----LEPDKI---G 379 (548)
Q Consensus 318 li~~~~~~g~~~~A~~~~~~m~------~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~ 379 (548)
.+..+.+.|++++|+.++++.. +.|+ ..+++.|..+|...|++++|+.+++++++ +.|++| .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455668899999999997651 3343 56788888999999999999999999887 445554 5
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 038673 380 NYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQ 453 (548)
Q Consensus 380 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 453 (548)
.+..|+.+|...|++++|..++++..+--.. .--..||...+++..|.+...+|+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~-------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV-------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 7888999999999999999999887642110 112468988888888887777765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0078 Score=49.11 Aligned_cols=111 Identities=10% Similarity=-0.055 Sum_probs=90.2
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc----CCCHH
Q 038673 164 AKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK----CGSID 239 (548)
Q Consensus 164 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~----~g~~~ 239 (548)
+++++|+.+|++..+.| .|+.. +...+...+.+++|.+.++...+.| +......|..+|.. .++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHcCCCCCccHH
Confidence 46788999999998887 44443 5566667778888999999998875 66778888888888 88999
Q ss_pred HHHHHHhcCCC-CChhhhHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 038673 240 DAYRIFVGMKQ-RNVFSYSSMILGFAM----HGRAHAAIQLFGDMVKTET 284 (548)
Q Consensus 240 ~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 284 (548)
+|.+.|++..+ .++..+..|-..|.. .++.++|+..|++..+.|.
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988764 577788888888888 8999999999999988753
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0042 Score=45.88 Aligned_cols=81 Identities=19% Similarity=0.124 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+..+. +..++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CHHHHHHHH
Confidence 4566677777777888888888887776643 334556667777777777888888777777776533 566666666
Q ss_pred HHHhc
Q 038673 230 DMYSK 234 (548)
Q Consensus 230 ~~y~~ 234 (548)
..+.+
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.012 Score=60.60 Aligned_cols=180 Identities=8% Similarity=-0.045 Sum_probs=93.0
Q ss_pred chHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhccCC----------cHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc
Q 038673 33 LKDSISLYCSMRREGIGPV-SFTLSALFKACTEVLD----------VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKC 101 (548)
Q Consensus 33 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 101 (548)
.++|++.++++... .|+ ..+|+.--.++...++ ++++...++.+++.. +.+..+|+.-.-++.+.
T Consensus 45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 34566666666653 343 3335444444444444 566666666666654 55566666655555555
Q ss_pred C--ChHHHHHHHccCCC---CCeehHHHHHHHHHhCC-ChHHHHHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHH
Q 038673 102 G--FLGCSRKVFDEMPE---RDVVSWTELIVAYANNG-DMESAGGLFNELPLK---DKVAWTAMVTGYVQNAKPREAIEY 172 (548)
Q Consensus 102 g--~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g-~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l 172 (548)
| +++++.+.++++.+ +|..+|+.-...+.+.| .++++++.++++.+. |..+|+.....+.+.+...++
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~--- 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS--- 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS---
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc---
Confidence 6 44666665555543 33344444444444444 444444444444322 233343333333221111000
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHH
Q 038673 173 FERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD 240 (548)
Q Consensus 173 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~ 240 (548)
+ ... -...+.++++.+.+..++...+. +..+|+-+-..+.+.+..++
T Consensus 198 -------~-~~~----------~~~~~~~~eel~~~~~ai~~~P~---~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 -------G-PQG----------RLPENVLLKELELVQNAFFTDPN---DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp -------S-SCC----------SSCHHHHHHHHHHHHHHHHHCSS---CSHHHHHHHHHHSCCCCCSC
T ss_pred -------c-ccc----------cccHHHHHHHHHHHHHHHhhCCC---CccHHHHHHHHHhcCCCccc
Confidence 0 000 00013467888888888877654 88888888888888777444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0048 Score=61.08 Aligned_cols=96 Identities=13% Similarity=-0.039 Sum_probs=74.3
Q ss_pred hcCCHHHHHHHHHHHHHc---CCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--
Q 038673 265 MHGRAHAAIQLFGDMVKT---ETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-- 339 (548)
Q Consensus 265 ~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 339 (548)
..|++++|+.++++.++. -+.|+... ...+++.|..+|...|++++|+.++++..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~--------------------~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i 369 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVY--------------------MLHMMYQAMGVCLYMQDWEGALKYGQKIIKP 369 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHH--------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchH--------------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 457899999999987653 23344322 23578899999999999999999998761
Q ss_pred -------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCchh
Q 038673 340 -------VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFE-----LEPDKIGN 380 (548)
Q Consensus 340 -------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 380 (548)
..|+ ..+++.|-..|...|++++|+.+++++++ +.|++|.+
T Consensus 370 ~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 3455 56788888999999999999999999887 57777643
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0012 Score=65.33 Aligned_cols=83 Identities=11% Similarity=0.053 Sum_probs=68.2
Q ss_pred HcCCHHHHHHHHHhCC------C---CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCc---hhHHHHH
Q 038673 324 RAGCLEEALKMVEKMP------V---EPN-GGVWGALLGACQIHRNPEIAQIAANHLFE-----LEPDKI---GNYIILS 385 (548)
Q Consensus 324 ~~g~~~~A~~~~~~m~------~---~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~ 385 (548)
..|++++|+.++++.. + .|+ ..+++.|..+|...|++++|+.+++++++ +.|+++ ..|+.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3578999999887651 2 343 56788899999999999999999999887 455554 5788999
Q ss_pred HHHHHcCCchHHHHHHHHHHh
Q 038673 386 NIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 386 ~~~~~~g~~~~a~~~~~~m~~ 406 (548)
.+|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.015 Score=62.87 Aligned_cols=156 Identities=15% Similarity=0.083 Sum_probs=99.7
Q ss_pred HHHHhCCChHHHHH-HHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHH
Q 038673 127 VAYANNGDMESAGG-LFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYAN 205 (548)
Q Consensus 127 ~~~~~~g~~~~A~~-~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 205 (548)
......+++++|.+ ++..++. ......++..+.+.|.+++|+++.+. |+ .-.......|+++.|.
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLAR 672 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHH
Confidence 34456788888887 6644441 22237777778888888888876531 11 1123345678888888
Q ss_pred HHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 038673 206 WVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETK 285 (548)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 285 (548)
++.+.+ .+...|..|..++.+.|+++.|.+.|.++.. |..+...|...|+.+...++-+.....|-
T Consensus 673 ~~~~~~--------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~~~~~a~~~~~- 738 (814)
T 3mkq_A 673 DLLTDE--------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVTLAKDAETTGK- 738 (814)
T ss_dssp HHHTTC--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-
T ss_pred HHHHhh--------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 875432 3778899999999999999999999888754 44455555566776665555555444321
Q ss_pred CCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 286 PNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 286 p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
++.-..+|.+.|++++|++++.++.
T Consensus 739 -----------------------------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 739 -----------------------------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp -----------------------------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred -----------------------------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 3334445556667777666666554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0033 Score=49.20 Aligned_cols=76 Identities=14% Similarity=-0.063 Sum_probs=42.5
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcC
Q 038673 169 AIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGM 248 (548)
Q Consensus 169 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 248 (548)
|+..|++..+.. +.+...+..+...+...|++++|...++.+++.... +...+..+..+|.+.|++++|...|++.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT---YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555554432 224445555555566666666666666666555433 5555666666666666666666665554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.007 Score=59.98 Aligned_cols=104 Identities=13% Similarity=0.003 Sum_probs=80.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038673 259 MILGFAMHGRAHAAIQLFGDMVKTE---TKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMV 335 (548)
Q Consensus 259 li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 335 (548)
.+..+...|++++|+.++++.++.. +.|+... ...+++.+..+|...|++++|+.++
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~--------------------~~~~~~~L~~~y~~~g~~~eA~~~~ 352 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIY--------------------QLKVLDCAMDACINLGLLEEALFYG 352 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHH--------------------HHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchH--------------------HHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3556778899999999999988632 2333221 2356888999999999999999999
Q ss_pred HhCC---------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCchhHH
Q 038673 336 EKMP---------VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFE-----LEPDKIGNYI 382 (548)
Q Consensus 336 ~~m~---------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~ 382 (548)
++.. ..|+ ..+++.|-..|...|++++|+.+++++++ +.|++|.+-.
T Consensus 353 ~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 353 TRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 8761 3455 56788888999999999999999999887 6788774443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.86 E-value=5.7e-05 Score=73.28 Aligned_cols=237 Identities=14% Similarity=0.126 Sum_probs=175.1
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 038673 17 PFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIG 96 (548)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 96 (548)
+..|+.|..++...++..+|++.|-+. -|+..|..++.++.+.|.++.-...+....+. ..++.+=+.|+-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHH
Confidence 346999999999999999998776322 26677999999999999999988888766654 456677789999
Q ss_pred HHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCC------------------------CCChhH
Q 038673 97 MYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELP------------------------LKDKVA 152 (548)
Q Consensus 97 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~------------------------~~~~~~ 152 (548)
+|++.+++.+-.+++ ..||+.-...+..-|...|.++.|.-+|..+. ..++.|
T Consensus 125 ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp HHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred HHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 999999976544332 23777778888889999999999988887763 236789
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMY 232 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y 232 (548)
|-.+-.+|...+.+.-|--.--.+. +.|| .+..++.-|-..|.+++-..+++.-. |.+- ....+++-|.-.|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEagl--glEr-AHmGmFTELaILY 273 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAAL--GLER-AHMGMFTELAILY 273 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTT-CCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCc-hhHHHHHHHHHHH
Confidence 9999999999998887654433332 2222 23445667788899998888888765 3332 4888999999999
Q ss_pred hcCCCHHHHHHHHhc----CCCC-------ChhhhHHHHHHHHhcCCHHHHHH
Q 038673 233 SKCGSIDDAYRIFVG----MKQR-------NVFSYSSMILGFAMHGRAHAAIQ 274 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~----~~~~-------~~~~~~~li~~~~~~g~~~~A~~ 274 (548)
+|-. .++..+.++. +.-| ....|.-++-.|.+..+++.|..
T Consensus 274 sKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 274 SKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 9863 3444444332 2222 45679999999999999987764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0016 Score=54.10 Aligned_cols=110 Identities=13% Similarity=-0.009 Sum_probs=54.6
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCh----------hHHHHHHHHHHHcCCCCCChHhHHHHHHHH
Q 038673 162 QNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVI----------KYANWVCEIAEGSGFGPINNVVVGSALIDM 231 (548)
Q Consensus 162 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~----------~~a~~~~~~~~~~~~~p~~~~~~~~~li~~ 231 (548)
+.+.+++|++.+++..+.. +-+...+..+..++...+++ ++|...|+++++..+. ...+|..+..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~---~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC---cHHHHHHHHHH
Confidence 3344555555555555432 22444455455555554443 2555555555554433 44455555555
Q ss_pred HhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038673 232 YSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTA 297 (548)
Q Consensus 232 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 297 (548)
|...|.+ .|+- -...|++++|++.|++.++ +.|+...|...+..
T Consensus 90 y~~lg~l-----------~P~~---------~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 90 YTSFAFL-----------TPDE---------TEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHH-----------CCCH---------HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHhccc-----------Ccch---------hhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 5444321 0110 0001477888888888777 56766665544443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0049 Score=50.34 Aligned_cols=114 Identities=10% Similarity=-0.042 Sum_probs=91.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChh
Q 038673 266 HGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGG 345 (548)
Q Consensus 266 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 345 (548)
.++.++|++.|++..+.| .|+ .. |...|...+..++|.+.|++.-..-++.
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~--------------------------a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~ 58 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMF--------------------------GC--LSLVSNSQINKQKLFQYLSKACELNSGN 58 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTT--------------------------HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHh--------------------------hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHH
Confidence 346789999999998865 222 12 5666777788888999998875345677
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHH----cCCchHHHHHHHHHHhCCCc
Q 038673 346 VWGALLGACQI----HRNPEIAQIAANHLFELEPDKIGNYIILSNIYAS----AGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 346 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 410 (548)
.+..|-..|.. .++.++|...+++..+. .++..+..|+.+|.. .+++++|.+.+++..+.|..
T Consensus 59 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 59 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 78788888877 78999999999999876 566789999999999 89999999999999887753
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0046 Score=47.13 Aligned_cols=87 Identities=14% Similarity=0.036 Sum_probs=64.2
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHH
Q 038673 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTM 94 (548)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 94 (548)
.+...|..+...|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...++..++..+-.++......+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l 83 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL 83 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence 356778888899999999999999999988753 2256678888888889999999999998887754223455555555
Q ss_pred HHHHHHcC
Q 038673 95 IGMYVKCG 102 (548)
Q Consensus 95 i~~~~~~g 102 (548)
...+.+.+
T Consensus 84 ~~~l~~~~ 91 (100)
T 3ma5_A 84 QDAKLKAE 91 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcc
Confidence 55555443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.018 Score=43.36 Aligned_cols=64 Identities=22% Similarity=0.182 Sum_probs=54.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-CCCC-hh-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 038673 318 MVDLLGRAGCLEEALKMVEKMP-VEPN-GG-VWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNY 381 (548)
Q Consensus 318 li~~~~~~g~~~~A~~~~~~m~-~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 381 (548)
....+.+.|++++|.+.+++.. ..|+ .. .|..+..++...|+++.|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4567788999999999998874 4454 56 788888899999999999999999999999988666
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.008 Score=45.36 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=53.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCch-hHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 351 LGACQIHRNPEIAQIAANHLFELEPDKIG-NYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 351 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
...+...|+++.|...++++++.+|+++. .+..++.+|...|++++|.+.+++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 45677899999999999999999999999 99999999999999999999999987643
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.2 Score=47.77 Aligned_cols=143 Identities=14% Similarity=0.168 Sum_probs=89.5
Q ss_pred CCChhhhHHHHHHHH--hcC---CHHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHH
Q 038673 250 QRNVFSYSSMILGFA--MHG---RAHAAIQLFGDMVKTETKPNGVT-FIGVLTACSHVGLKCYGVSPSTDHYACMVDLLG 323 (548)
Q Consensus 250 ~~~~~~~~~li~~~~--~~g---~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~ 323 (548)
..+...|...+.+.. ..+ ...+|..+|++.++ +.|+... +..+.-++.. ....+ |....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~--~~~~~--~~~~~--------- 255 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV--RHSQH--PLDEK--------- 255 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--HHHHS--CCCHH---------
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--HhccC--CCchh---------
Confidence 346777777776543 233 35789999999988 5777432 2211111110 00000 00000
Q ss_pred HcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 038673 324 RAGCLEEALKMVEKMP-VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRR 402 (548)
Q Consensus 324 ~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 402 (548)
.......|.+-...+. ...++.+|..+-..+...|+++.|...++++++++|+ ...|..++.++.-.|++++|.+.++
T Consensus 256 ~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~ 334 (372)
T 3ly7_A 256 QLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYL 334 (372)
T ss_dssp HHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 0001123333333343 2345778877777777789999999999999999975 5578899999999999999999998
Q ss_pred HHHhCC
Q 038673 403 LLKMTG 408 (548)
Q Consensus 403 ~m~~~g 408 (548)
+.....
T Consensus 335 ~AlrL~ 340 (372)
T 3ly7_A 335 TAFNLR 340 (372)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 886644
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.067 Score=50.97 Aligned_cols=141 Identities=10% Similarity=-0.025 Sum_probs=93.6
Q ss_pred CCChhHHHHHHHHHH--HCC---ChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHH---ccC--C---hhHHHHHHHHHH
Q 038673 147 LKDKVAWTAMVTGYV--QNA---KPREAIEYFERMQYAGVETD-YVTLVGVISACA---QLG--V---IKYANWVCEIAE 212 (548)
Q Consensus 147 ~~~~~~~~~li~~~~--~~g---~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~---~~g--~---~~~a~~~~~~~~ 212 (548)
..+...|...+.+.. ..+ ...+|..+|++..+. .|+ ...+..+.-++. ..+ . .......+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 447778888776643 333 347899999998875 555 233443333332 111 1 111111222222
Q ss_pred HcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh
Q 038673 213 GSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVT 290 (548)
Q Consensus 213 ~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 290 (548)
.....| .+..++.++...+...|++++|...++++.. ++...|..+-..+...|++++|.+.|++... +.|...|
T Consensus 269 a~~~~~-~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t 345 (372)
T 3ly7_A 269 TLPELN-NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANT 345 (372)
T ss_dssp TCGGGT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHH
T ss_pred hcccCC-cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcCh
Confidence 223334 5888999988888888999999999998874 6666666777788899999999999999988 5777777
Q ss_pred HH
Q 038673 291 FI 292 (548)
Q Consensus 291 ~~ 292 (548)
|.
T Consensus 346 ~~ 347 (372)
T 3ly7_A 346 LY 347 (372)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.24 Score=39.13 Aligned_cols=135 Identities=9% Similarity=0.046 Sum_probs=93.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHH------HHcCCHHHHHHHHH
Q 038673 263 FAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLL------GRAGCLEEALKMVE 336 (548)
Q Consensus 263 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~------~~~g~~~~A~~~~~ 336 (548)
+...|..++..++..+.... .+..-++-+|.-....- +-...-..++.- ..+|++......+-
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a--------~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~ 85 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESI--------DCRYMFQVLDKIGSYFDLDKCQNLKSVVECGV 85 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHC--------CHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhh--------chhHHHHHHHHHhhhcCcHhhhcHHHHHHHHH
Confidence 45578899999999888764 22223333332211110 111111111111 24566677776666
Q ss_pred hCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 038673 337 KMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 337 ~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 410 (548)
.+. .+...+...+......|..++-.++...++.-.|.++.....++++|.+.|+..+|.+++++.-++|++
T Consensus 86 ~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 86 INN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred Hhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 664 456677788899999999999999999987777778889999999999999999999999999999985
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.045 Score=44.80 Aligned_cols=92 Identities=9% Similarity=-0.002 Sum_probs=71.5
Q ss_pred CCChhHHHHHHHHHHhcC---CHHHHHHHHHHHhhcC-C-CCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCce
Q 038673 341 EPNGGVWGALLGACQIHR---NPEIAQIAANHLFELE-P-DKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGY 415 (548)
Q Consensus 341 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 415 (548)
.++..+...+-.++.+.+ +.++|+.+++.+.+.+ | ++...+..|+-+|.+.|++++|.++++.+.+. +
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i----e--- 101 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT----E--- 101 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH----C---
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----C---
Confidence 367777777778888888 6679999999999988 7 45678888999999999999999999998652 2
Q ss_pred eEEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCccc
Q 038673 416 SWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQP 459 (548)
Q Consensus 416 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p 459 (548)
|...++......+.+.++++|++-
T Consensus 102 --------------------P~n~QA~~Lk~~ie~~~~kdgl~G 125 (152)
T 1pc2_A 102 --------------------PQNNQAKELERLIDKAMKKDGLVG 125 (152)
T ss_dssp --------------------TTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred --------------------CCCHHHHHHHHHHHHHHHHhhHHH
Confidence 233455555566777888888754
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.86 Score=38.24 Aligned_cols=127 Identities=11% Similarity=0.048 Sum_probs=78.2
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHH
Q 038673 195 CAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQ 274 (548)
Q Consensus 195 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 274 (548)
....|+++.|.++.+.+ .+...|..|.+...+.|+++-|++.|.+... +..+.-.|...|+.+.-.+
T Consensus 15 AL~lg~l~~A~e~a~~l--------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHH
Confidence 34567777777776654 2667788888888888888888888877653 3444445566677666555
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 038673 275 LFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGAC 354 (548)
Q Consensus 275 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 354 (548)
+-+.....|- ++.-...+.-.|+++++.++|.+...-|... -..
T Consensus 82 la~iA~~~g~------------------------------~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A 125 (177)
T 3mkq_B 82 MQNIAQTRED------------------------------FGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVA 125 (177)
T ss_dssp HHHHHHHTTC------------------------------HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHH
T ss_pred HHHHHHHCcc------------------------------HHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHH
Confidence 5444443321 4444555666788888888887765222211 123
Q ss_pred HhcCCHHHHHHHHHHH
Q 038673 355 QIHRNPEIAQIAANHL 370 (548)
Q Consensus 355 ~~~~~~~~a~~~~~~~ 370 (548)
..+|..+.|.++.+.+
T Consensus 126 ~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 126 KANGDEAAASAFLEQA 141 (177)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCcHHHHHHHHHHh
Confidence 3466666777666554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.33 E-value=0.4 Score=51.65 Aligned_cols=131 Identities=14% Similarity=0.140 Sum_probs=90.6
Q ss_pred HHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHH
Q 038673 92 NTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIE 171 (548)
Q Consensus 92 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 171 (548)
..++..+.+.|..+.|.++.+.- ..-.....+.|++++|.++.+.+. +...|..+...+.+.|+++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 67777778888888888765321 122334567788888888877664 56789999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 172 YFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 172 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
.|.++.. |..+...+...++.+...++-+.+...|. ++....+|.+.|++++|.+++.++.
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~--------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK--------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc--------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 9987742 34455555557777776666666555442 2334455667788888887776654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.049 Score=49.77 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=71.5
Q ss_pred HHHHHHHHHhCC-CCCC---hhHHHHHHHHHHh-----cCCHHHHHHHHHHHhhcCCCC-chhHHHHHHHHHHc-CCchH
Q 038673 328 LEEALKMVEKMP-VEPN---GGVWGALLGACQI-----HRNPEIAQIAANHLFELEPDK-IGNYIILSNIYASA-GMWDD 396 (548)
Q Consensus 328 ~~~A~~~~~~m~-~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 396 (548)
..+|...+++.- +.|+ ...|..|...|.. .|+.++|++.|++.+++.|+. ..++...+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 455666666553 5676 5678888888888 599999999999999999975 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 038673 397 VSRVRRLLKMTGLKKNPG 414 (548)
Q Consensus 397 a~~~~~~m~~~g~~~~~~ 414 (548)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998877664454
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.095 Score=39.10 Aligned_cols=79 Identities=11% Similarity=0.039 Sum_probs=59.8
Q ss_pred CcCHHHHHHHHHHHHHcCC---HHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHH
Q 038673 309 SPSTDHYACMVDLLGRAGC---LEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYII 383 (548)
Q Consensus 309 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 383 (548)
+.++..+..+..++...++ .++|..++++.- ..|+ +..+..+-..+...|+++.|...|+++++.+|+++ ....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~-~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL-DRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC-CHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc-cHHH
Confidence 3466778888888865554 699999998874 5666 55666666889999999999999999999999843 4555
Q ss_pred HHHHH
Q 038673 384 LSNIY 388 (548)
Q Consensus 384 l~~~~ 388 (548)
+....
T Consensus 82 i~~~I 86 (93)
T 3bee_A 82 IIESI 86 (93)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.17 Score=38.47 Aligned_cols=74 Identities=14% Similarity=0.018 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCC----C-----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMP----V-----EPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNY 381 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~-----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 381 (548)
+..-+..|...+.+.|+++.|...|+... - .+...++..|..++.+.|+++.|...+++++++.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 44556778889999999999999987752 0 12366788888999999999999999999999999987654
Q ss_pred HHH
Q 038673 382 IIL 384 (548)
Q Consensus 382 ~~l 384 (548)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.68 Score=38.87 Aligned_cols=129 Identities=15% Similarity=0.099 Sum_probs=90.4
Q ss_pred HHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCC
Q 038673 229 IDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGV 308 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 308 (548)
.+....+|+++.|.++.+.+ .+...|..|......+|+.+-|.+.|.+...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------------------------- 62 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS--------------------------- 62 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------------------------
Confidence 34556799999999998876 5678999999999999999999999998765
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 038673 309 SPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIY 388 (548)
Q Consensus 309 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 388 (548)
+..+.-.|.-.|+.+.-.++-+....+- -++.-...+...|+++++.+++.+.-.. .++-.+
T Consensus 63 ------~~~L~~Ly~~tg~~e~L~kla~iA~~~g---~~n~af~~~l~lGdv~~~i~lL~~~~r~---------~eA~~~ 124 (177)
T 3mkq_B 63 ------FDKLSFLYLVTGDVNKLSKMQNIAQTRE---DFGSMLLNTFYNNSTKERSSIFAEGGSL---------PLAYAV 124 (177)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCHHHHHHHHHHTTCH---------HHHHHH
T ss_pred ------HHHHHHHHHHhCCHHHHHHHHHHHHHCc---cHHHHHHHHHHcCCHHHHHHHHHHCCCh---------HHHHHH
Confidence 6667777788888777655544332111 2445556677789999999888654321 112222
Q ss_pred H-HcCCchHHHHHHHHH
Q 038673 389 A-SAGMWDDVSRVRRLL 404 (548)
Q Consensus 389 ~-~~g~~~~a~~~~~~m 404 (548)
+ ..|--+.|.++.+.+
T Consensus 125 A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 125 AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHTTCHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHHHh
Confidence 2 345566777776655
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.21 E-value=1.6 Score=34.49 Aligned_cols=144 Identities=15% Similarity=-0.019 Sum_probs=83.4
Q ss_pred HHHHHHH--hhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC-CCee---hHHHHHHH
Q 038673 55 LSALFKA--CTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE-RDVV---SWTELIVA 128 (548)
Q Consensus 55 ~~~ll~a--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~---~~~~li~~ 128 (548)
...|+.| ..-.|.++++.++.....+.. +..-+|=+|.-....-+-+...++++.+-. -|.. -.-.++.+
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C 83 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVEC 83 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHH
Confidence 3444444 344567777777777766654 233333333322233333444444444322 1111 11223444
Q ss_pred HHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHH
Q 038673 129 YANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVC 208 (548)
Q Consensus 129 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 208 (548)
|++.|. +....+.-+.....+|+-++-.+++..+.. +.+|+......+..||.+.|+..++.+++
T Consensus 84 ~~~~n~--------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 84 GVINNT--------------LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp HHHTTC--------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcc--------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 444332 334455566777888888888888888544 34777778888888888888888888888
Q ss_pred HHHHHcCCC
Q 038673 209 EIAEGSGFG 217 (548)
Q Consensus 209 ~~~~~~~~~ 217 (548)
.++-+.|+.
T Consensus 149 ~~AC~kG~k 157 (172)
T 1wy6_A 149 IEACKKGEK 157 (172)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHhhhH
Confidence 888888865
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.68 E-value=4.2e-06 Score=80.99 Aligned_cols=226 Identities=14% Similarity=0.078 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHH
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALID 230 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~ 230 (548)
..|+.+..++.+.++..+|++.|-+. -|...|..++.++.+.|.+++-..++..+.+..- ++.+-+.|+-
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k----e~~IDteLi~ 124 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR----ESYVETELIF 124 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC----STTTTHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc----ccccHHHHHH
Confidence 34555555555555555444433111 1233444555555555555555555544433321 3333445555
Q ss_pred HHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC-----cc
Q 038673 231 MYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL-----KC 305 (548)
Q Consensus 231 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~ 305 (548)
+|++.+++.+-++++. .||+.-...+..-|...|.++.|.-+|..+-.-. .|-..+.+.|. ..
T Consensus 125 ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~a---------kLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFG---------RLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp HHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCT---------TTSSSSSSCSGGGSSTTT
T ss_pred HHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHH---------HHHHHHHHHHHHHHHHHH
Confidence 5555555444332221 2444444445555555555555544443321100 00000000000 00
Q ss_pred CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 306 YGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 306 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
..-.-++.||-.+-.+|...+.+.-|.-.--.+-+.||. ...++..|...|.+++-+.+++..+.++.-+.+.+.-|+
T Consensus 193 ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade--L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELa 270 (624)
T 3lvg_A 193 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA 270 (624)
T ss_dssp TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHH
T ss_pred HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 011124455666666677777665554333222223331 223445567777777777777777777777777888888
Q ss_pred HHHHHcCCchHHHHHH
Q 038673 386 NIYASAGMWDDVSRVR 401 (548)
Q Consensus 386 ~~~~~~g~~~~a~~~~ 401 (548)
-+|++- +.++..+-+
T Consensus 271 ILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHL 285 (624)
T ss_dssp HHHHSS-CTTHHHHHH
T ss_pred HHHHhc-CHHHHHHHH
Confidence 777764 344444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.21 E-value=0.66 Score=36.43 Aligned_cols=104 Identities=11% Similarity=-0.016 Sum_probs=66.9
Q ss_pred CHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHH---HHHHHHHHhhcC-C-CCchhHHHHHHHHHHcCCchHHHH
Q 038673 327 CLEEALKMVEKMP--VEPNGGVWGALLGACQIHRNPEI---AQIAANHLFELE-P-DKIGNYIILSNIYASAGMWDDVSR 399 (548)
Q Consensus 327 ~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~ 399 (548)
.+..+.+-|.+.. -.|+..+--.+..++.+.++... ++.+++.+...+ | ........|+-++.+.|++++|.+
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344444444331 23666666666677777776655 888888888765 5 345567788889999999999999
Q ss_pred HHHHHHhCCCccCCceeEEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCc
Q 038673 400 VRRLLKMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGY 457 (548)
Q Consensus 400 ~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 457 (548)
+.+.+.+. + |...++......+.++|.++|+
T Consensus 96 ~~~~lL~~----e-----------------------P~n~QA~~Lk~~i~~~i~kdGl 126 (126)
T 1nzn_A 96 YVRGLLQT----E-----------------------PQNNQAKELERLIDKAMKKDGL 126 (126)
T ss_dssp HHHHHHHH----C-----------------------TTCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHh----C-----------------------CCCHHHHHHHHHHHHHHHhccC
Confidence 99888642 2 3334555555566677777663
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.10 E-value=0.71 Score=34.93 Aligned_cols=68 Identities=10% Similarity=-0.151 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCC------CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAG------VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFG 217 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 217 (548)
...+..|...+.+.|+++.|...|+...+.- -.+....+..+..++.+.|+++.|...++.+.+..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 3445567777778888888888777765421 1223445566666677777777777777777665533
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.87 E-value=5.9 Score=36.70 Aligned_cols=145 Identities=11% Similarity=0.112 Sum_probs=87.8
Q ss_pred HcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHH----HHHH
Q 038673 100 KCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIE----YFER 175 (548)
Q Consensus 100 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~----l~~~ 175 (548)
..|++=+|.+. |.++..-|.+.+++++|.+++.. -...+.+.|+...|-+ +.+-
T Consensus 25 ~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev 82 (312)
T 2wpv_A 25 KAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEV 82 (312)
T ss_dssp HHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHH
Confidence 34555556554 45566666666677766665432 2234455666655544 3455
Q ss_pred HHHCCCCCCHhhHHHHHHHHHccCC--h---hHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 038673 176 MQYAGVETDYVTLVGVISACAQLGV--I---KYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ 250 (548)
Q Consensus 176 m~~~g~~p~~~t~~~ll~~~~~~g~--~---~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 250 (548)
..+.++++|......++..+..... . .-..+......+.|-.|..++.....+...|.+.|++.+|+..|-.-..
T Consensus 83 ~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~ 162 (312)
T 2wpv_A 83 YDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTH 162 (312)
T ss_dssp HHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCH
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Confidence 5667888888877777777655332 1 2223333333444443446888999999999999999999998863332
Q ss_pred CChhhhHHHHHHHHhc
Q 038673 251 RNVFSYSSMILGFAMH 266 (548)
Q Consensus 251 ~~~~~~~~li~~~~~~ 266 (548)
.+...+..|+--+...
T Consensus 163 ~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 163 DSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh
Confidence 3455555555544443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.72 E-value=0.69 Score=37.76 Aligned_cols=79 Identities=13% Similarity=-0.046 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC---ChhHHHHHHHHHHHcC-CCCCChHhHHHHHHHHHhcCCCHHHHHH
Q 038673 168 EAIEYFERMQYAGVETDYVTLVGVISACAQLG---VIKYANWVCEIAEGSG-FGPINNVVVGSALIDMYSKCGSIDDAYR 243 (548)
Q Consensus 168 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-~~p~~~~~~~~~li~~y~~~g~~~~A~~ 243 (548)
.+.+-|.+....| .++..+...+..++.+.. ++++|..+++.+.+.. +. .....+-.|.-+|.+.|++++|.+
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~--~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--chHHHHHHHHHHHHHccCHHHHHH
Confidence 3444444444433 244444444444555544 4445555555555543 11 123333334444444444444444
Q ss_pred HHhcCC
Q 038673 244 IFVGMK 249 (548)
Q Consensus 244 ~~~~~~ 249 (548)
.++.+.
T Consensus 93 y~~~lL 98 (152)
T 1pc2_A 93 YVRGLL 98 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.26 E-value=0.87 Score=36.84 Aligned_cols=100 Identities=10% Similarity=0.100 Sum_probs=73.3
Q ss_pred CCCCCcchHHHHHHHHHhCCCc------hHHHHHHHHHHHCCCCCChhh----HHHHHHH---hhccCCcHHHHHHHHHH
Q 038673 12 VKYKNPFLWTALIRGYILQGHL------KDSISLYCSMRREGIGPVSFT----LSALFKA---CTEVLDVSLGQQIHAQT 78 (548)
Q Consensus 12 ~~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~~----~~~ll~a---~~~~~~~~~a~~~~~~~ 78 (548)
|.+.|..+|=..+.-.-+.|++ ++.+++|++.... ++|+... |..+.-- +...+|.+.|+++|..+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3456788999999988888999 8889999988874 6775421 2221111 12347899999999999
Q ss_pred HHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccC
Q 038673 79 ILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEM 114 (548)
Q Consensus 79 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 114 (548)
++.. -.. ..+|......-.+.|++..|++++...
T Consensus 87 ~~~h-KkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 87 RANC-KKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp HHHC-TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHh-HHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 8864 333 788888888888999999999997654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.12 E-value=0.49 Score=38.26 Aligned_cols=100 Identities=9% Similarity=-0.001 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHcCCH------HHHHHHHHhCC--CCCC-hhHHHHHHH------HHHhcCCHHHHHHHHHHHhhcCC
Q 038673 311 STDHYACMVDLLGRAGCL------EEALKMVEKMP--VEPN-GGVWGALLG------ACQIHRNPEIAQIAANHLFELEP 375 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~------~~A~~~~~~m~--~~p~-~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~~p 375 (548)
|.++|-..++.+.+.|+. ++..++|++.- +.|+ ...|...+. .+...++++.|..+|+.++++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence 667888888888888988 77777777652 3444 233333332 23445899999999999988755
Q ss_pred CCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 038673 376 DKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 376 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 410 (548)
.-+..+...+..-.++|+.+.|.+++......+.+
T Consensus 92 kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 92 KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 55667777888889999999999999998876643
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=91.55 E-value=8.9 Score=35.81 Aligned_cols=133 Identities=10% Similarity=0.087 Sum_probs=76.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHH----HHHHHHCCCCCCHhhHHHHHHHHHc
Q 038673 122 WTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEY----FERMQYAGVETDYVTLVGVISACAQ 197 (548)
Q Consensus 122 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~~ 197 (548)
|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ ++-+.+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44555566666666666665422 22344555666554443 3455567788888777777777665
Q ss_pred cCChh-HHHHHHHH----HHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHh
Q 038673 198 LGVIK-YANWVCEI----AEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAM 265 (548)
Q Consensus 198 ~g~~~-~a~~~~~~----~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 265 (548)
...-+ .=..+.+. -.+.|-.|..++.....+...|.+.+++.+|+..|-.-..+.+..+..|+--+..
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 54321 11223333 3344433446788888889999999999999888843222223455444444333
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.23 E-value=0.82 Score=48.15 Aligned_cols=54 Identities=13% Similarity=0.028 Sum_probs=50.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 352 GACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
.-|...|+++.|.++.++....-|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 447789999999999999999999999999999999999999999999998773
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=90.14 E-value=8 Score=32.88 Aligned_cols=121 Identities=15% Similarity=0.066 Sum_probs=54.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCCh
Q 038673 87 DLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKP 166 (548)
Q Consensus 87 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 166 (548)
|..+....+.++.+.|+.+....+...+..++...-...+.++.+.|+.+....+...+..++...-...+.++.+.+..
T Consensus 58 ~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 137 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE 137 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH
Confidence 33344444444444444333333333344444444444555555555544444444444455555444555555555543
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHH
Q 038673 167 REAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAE 212 (548)
Q Consensus 167 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 212 (548)
++...+..+.. .++...-...+.++.+.|.. .+...+..+.
T Consensus 138 -~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l 178 (201)
T 3ltj_A 138 -RAVEPLIKALK---DEDGWVRQSAADALGEIGGE-RVRAAMEKLA 178 (201)
T ss_dssp -GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHH
T ss_pred -HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 33333444432 23444445555555555543 3344444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.06 E-value=4.4 Score=29.92 Aligned_cols=60 Identities=12% Similarity=0.116 Sum_probs=41.7
Q ss_pred HHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHH
Q 038673 127 VAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLV 189 (548)
Q Consensus 127 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 189 (548)
..+...|++++|..+.+.+..||...|-++-. .+.|..+++...+.++..+| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34567777777777777777788888876654 46777777777777777766 45444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.90 E-value=4.7 Score=29.83 Aligned_cols=59 Identities=20% Similarity=0.192 Sum_probs=37.8
Q ss_pred HHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhH
Q 038673 127 VAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTL 188 (548)
Q Consensus 127 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 188 (548)
..+...|++++|..+.+.+..||...|-++-.. +.|..+++...+.++..+| .|....|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345666777777777777777777777666543 5566667766666666665 4444444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.42 E-value=7.1 Score=31.23 Aligned_cols=91 Identities=8% Similarity=-0.018 Sum_probs=62.8
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCC-CchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcee
Q 038673 341 EPNGGVWGALLGACQIHRN---PEIAQIAANHLFELEPD-KIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYS 416 (548)
Q Consensus 341 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s 416 (548)
.|+..+--.+..++.+..+ ..+++.+++.+....|. .......|+-++.+.|++++|.++.+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e-------- 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-------- 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--------
Confidence 4565555555556666554 45788888888887775 34566678888999999999999998886522
Q ss_pred EEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcc
Q 038673 417 WLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQ 458 (548)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 458 (548)
|...++.+.-..+.++|.++|++
T Consensus 108 -------------------P~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 108 -------------------RNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp -------------------CCCHHHHHHHHHHHHHHHHTTTT
T ss_pred -------------------CCcHHHHHHHHHHHHHHHHhchh
Confidence 23345555555667778888765
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=89.37 E-value=1.3 Score=40.45 Aligned_cols=80 Identities=11% Similarity=0.034 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcC-----CCHHHHHHHHhcCCC--C--ChhhhHHHHHHHHhc-CCHHH
Q 038673 202 KYANWVCEIAEGSGFGPINNVVVGSALIDMYSKC-----GSIDDAYRIFVGMKQ--R--NVFSYSSMILGFAMH-GRAHA 271 (548)
Q Consensus 202 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~-----g~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~-g~~~~ 271 (548)
..|+..++++++....- .+...|..|...|.+. |+.++|.+.|++..+ | +..++......++.. |+.++
T Consensus 180 ~~A~a~lerAleLDP~~-~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 180 HAAVMMLERACDLWPSY-QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHCTTH-HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHhCCCc-ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34444444444443221 1334555555555552 555555555555542 2 244555555555553 55666
Q ss_pred HHHHHHHHHHc
Q 038673 272 AIQLFGDMVKT 282 (548)
Q Consensus 272 A~~l~~~m~~~ 282 (548)
|.+.+++.+..
T Consensus 259 a~~~L~kAL~a 269 (301)
T 3u64_A 259 FDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHcC
Confidence 66666665553
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.80 E-value=0.91 Score=44.03 Aligned_cols=68 Identities=16% Similarity=0.034 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH-----hCCCccCCc
Q 038673 347 WGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK-----MTGLKKNPG 414 (548)
Q Consensus 347 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~~ 414 (548)
...++.++...|+.+.+...++.+...+|-+...+..|+.+|.+.|+..+|.+.|+... +.|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34456677889999999999999999999999999999999999999999999988875 458877664
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.66 E-value=2 Score=31.87 Aligned_cols=63 Identities=11% Similarity=0.019 Sum_probs=49.5
Q ss_pred CchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 038673 32 HLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIG 96 (548)
Q Consensus 32 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 96 (548)
+.-+..+-++.+....+.|++....+.|+||.+.+++..|.++++-+...- .+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 344666777777778889999999999999999999999999999876653 444566777664
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.48 E-value=14 Score=41.49 Aligned_cols=190 Identities=9% Similarity=-0.020 Sum_probs=114.9
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC----C-------------
Q 038673 190 GVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR----N------------- 252 (548)
Q Consensus 190 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~------------- 252 (548)
.++..+...+..+.+.++.... | .+....-.+..+|..+|++++|...|.+.... +
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------N-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------C-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------c-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 3445555666666665544332 2 34444566788899999999999999887420 0
Q ss_pred ---------hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHH
Q 038673 253 ---------VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLG 323 (548)
Q Consensus 253 ---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~ 323 (548)
..-|.-++..+-+.|.++.++++-+..++.. .++.... ....|..+.+.+.
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~-~~~~~~~-------------------~~~l~~~iFk~~L 949 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK-ETDDEDL-------------------SIAITHETLKTAC 949 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC-CSCCHHH-------------------HHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cCCChhh-------------------HHHHHHHHHHHHH
Confidence 0124556667777788888887777666532 2221111 1235778888899
Q ss_pred HcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCCHHHH------------HHHHHH-Hhhc-CCCC-chhHHHHHHH
Q 038673 324 RAGCLEEALKMVEKMP-VEPNGGVWGALLGACQIHRNPEIA------------QIAANH-LFEL-EPDK-IGNYIILSNI 387 (548)
Q Consensus 324 ~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a------------~~~~~~-~~~~-~p~~-~~~~~~l~~~ 387 (548)
..|++++|...+-.++ ..--......|+...+..|..+.- ..++.. +... ++.+ +..|..|-.-
T Consensus 950 ~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ 1029 (1139)
T 4fhn_B 950 AAGKFDAAHVALMVLSTTPLKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSW 1029 (1139)
T ss_dssp HHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHH
T ss_pred hhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhh
Confidence 9999999999888775 122255667777665555544333 333322 2222 3343 3356666666
Q ss_pred HHHcCCchHHHHH-HHHHHh
Q 038673 388 YASAGMWDDVSRV-RRLLKM 406 (548)
Q Consensus 388 ~~~~g~~~~a~~~-~~~m~~ 406 (548)
+...|++..|..+ ++...+
T Consensus 1030 ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 1030 RYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHTTSCHHHHHHHHHHH
T ss_pred hhccCChHHHHHHHHHHHHH
Confidence 6777888777665 555443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=87.61 E-value=13 Score=31.90 Aligned_cols=186 Identities=13% Similarity=0.087 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHcc
Q 038673 34 KDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDE 113 (548)
Q Consensus 34 ~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 113 (548)
.+++..+..... .+|...-...+.++...++.+....+.+ ++ -.+|..+....+.++.+.|+.+....+.+.
T Consensus 18 ~~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~~~~~~L~~-~l----~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~ 89 (211)
T 3ltm_A 18 PEKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDERAVEPLIK-AL----KDEDAWVRRAAADALGQIGDERAVEPLIKA 89 (211)
T ss_dssp GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HT----TCSCHHHHHHHHHHHHHHCCGGGHHHHHHH
T ss_pred HhHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCccHHHHHHH-HH----cCCCHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 334444444433 2455555555666666665333333322 22 245666777777777777766555555555
Q ss_pred CCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 038673 114 MPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVIS 193 (548)
Q Consensus 114 m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 193 (548)
+..++...-...+.++.+.|+.+....+...+..++...-...+.++.+.|..+ +...+..+.. .+|...-...+.
T Consensus 90 l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 165 (211)
T 3ltm_A 90 LKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAAD 165 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 666777676777777777777655555566666677766666677777766643 4555555543 356556666677
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCC
Q 038673 194 ACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGS 237 (548)
Q Consensus 194 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~ 237 (548)
++.+.+. ..+...+..+.+.. +..+-...+.++.+.+.
T Consensus 166 aL~~~~~-~~~~~~L~~~l~d~-----~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 166 ALGEIGG-ERVRAAMEKLAETG-----TGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHCS-HHHHHHHHHHHHHC-----CHHHHHHHHHHHHC---
T ss_pred HHHHhCc-hhHHHHHHHHHhCC-----CHHHHHHHHHHHHhcCC
Confidence 7777766 44555555555432 44555555666555443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.50 E-value=3.9 Score=43.07 Aligned_cols=124 Identities=13% Similarity=0.053 Sum_probs=82.3
Q ss_pred HHHHHHHHccCC-hhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCC-HHHHHHHHhcC-----------CCCChhh
Q 038673 189 VGVISACAQLGV-IKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGS-IDDAYRIFVGM-----------KQRNVFS 255 (548)
Q Consensus 189 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~-----------~~~~~~~ 255 (548)
.+++..+.-.+. .+.|..+++.+.+.... .+.....+++..+.+.++ --+|.+++.+. ...+...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~--~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPI--HDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCc--hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 445555555655 57899999998887644 344445556666555543 22344443332 2223211
Q ss_pred -----h-HHH----HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHc
Q 038673 256 -----Y-SSM----ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRA 325 (548)
Q Consensus 256 -----~-~~l----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~ 325 (548)
+ ..| ..-+...|+++.|+++-++... ..|+.. .+|..|...|...
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF-----------------------~tW~~La~vYi~l 384 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSF-----------------------ESWYNLARCHIKK 384 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCH-----------------------HHHHHHHHHHHHT
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhh-----------------------HHHHHHHHHHHHh
Confidence 1 112 2345668999999999999987 456643 6799999999999
Q ss_pred CCHHHHHHHHHhCC
Q 038673 326 GCLEEALKMVEKMP 339 (548)
Q Consensus 326 g~~~~A~~~~~~m~ 339 (548)
|+++.|+-.++.+|
T Consensus 385 ~d~e~ALLtLNScP 398 (754)
T 4gns_B 385 EEYEKALFAINSMP 398 (754)
T ss_dssp TCHHHHHHHHHHSC
T ss_pred ccHHHHHHHHhcCC
Confidence 99999999999997
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.81 E-value=5.2 Score=29.72 Aligned_cols=50 Identities=14% Similarity=0.066 Sum_probs=40.4
Q ss_pred hCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 038673 337 KMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSN 386 (548)
Q Consensus 337 ~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 386 (548)
.+-+-|++.+..+.+.+|++.+++..|.++++-+...-.+....|..++.
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 33477999999999999999999999999999998855444556776653
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=84.78 E-value=29 Score=33.34 Aligned_cols=287 Identities=10% Similarity=0.012 Sum_probs=146.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCC--------CCeehHHHHHHHHHhCC-ChHHHHHHHccCCC---CChhHH-----
Q 038673 91 GNTMIGMYVKCGFLGCSRKVFDEMPE--------RDVVSWTELIVAYANNG-DMESAGGLFNELPL---KDKVAW----- 153 (548)
Q Consensus 91 ~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~g-~~~~A~~~f~~m~~---~~~~~~----- 153 (548)
...|...|.+.|+.++..+++..... +....-..++..+.... ..+.-.++..+..+ .+-.+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777666543 12233445555554432 22222222222210 011222
Q ss_pred -HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH-----hhHHHHHHHHHccCChhHHHHHHHHHHHc--C--CCCCChHh
Q 038673 154 -TAMVTGYVQNAKPREAIEYFERMQYAGVETDY-----VTLVGVISACAQLGVIKYANWVCEIAEGS--G--FGPINNVV 223 (548)
Q Consensus 154 -~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~--~~p~~~~~ 223 (548)
.-++..|...|++.+|++++.++.+.=-..|. ..+..-+..|...+++.++...+...... . .+|.....
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 25788899999999999999988763112222 23455566778889999999988877542 2 22211112
Q ss_pred HHHHHHHHHh-cCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHH-----HHcCCCCCHhhHHHHHHH
Q 038673 224 VGSALIDMYS-KCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDM-----VKTETKPNGVTFIGVLTA 297 (548)
Q Consensus 224 ~~~~li~~y~-~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m-----~~~g~~p~~~t~~~ll~a 297 (548)
....-.-++. ..+++..|...|-+.. .+|-..|.. .+..++.-| ... -+++. ..++..
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf-----------~~f~~~~~~-~~~~~lkYlvL~aLl~~-~r~el---~~~l~~ 245 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAF-----------EGFDSVDSV-KALTSLKYMLLCKIMLG-QSDDV---NQLVSG 245 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH-----------HHHTTTCHH-HHHHHHHHHHHHHHHTT-CGGGH---HHHHHS
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHH-----------hcccccccH-HHHHHHHHHHHHHHHcC-CHHHH---HHHhcc
Confidence 2222344555 7888988888775531 122222211 111111111 110 01111 111110
Q ss_pred HhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCChhHH---HHHHHHHHhcCCHHHHHHHHHHHhh
Q 038673 298 CSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VEPNGGVW---GALLGACQIHRNPEIAQIAANHLFE 372 (548)
Q Consensus 298 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~ 372 (548)
-.. ..+ ..|....+..++.+| ..+++.+..++++... +..|.... ..|..... ...+.++
T Consensus 246 ~~~---~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i-- 310 (394)
T 3txn_A 246 KLA---ITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRI-- 310 (394)
T ss_dssp HHH---HTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHH--
T ss_pred ccc---ccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHH--
Confidence 000 001 235555566666665 4678888888887764 44454421 11111111 1111111
Q ss_pred cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 038673 373 LEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 373 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 410 (548)
..|-....+..++..+.- ..++++..+.+|...|.-
T Consensus 311 ~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 311 IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCCe
Confidence 456666677777766643 578999999999887763
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=82.83 E-value=46 Score=34.19 Aligned_cols=105 Identities=12% Similarity=0.062 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhc----C-C--------ccCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 038673 267 GRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV----G-L--------KCYGVSPSTDHYACMVDLLGRAGCLEEALK 333 (548)
Q Consensus 267 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----~-~--------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 333 (548)
.+.+.|..+|......+ ..+......+-...+.. + . ......++.....-.+....+.|+++.|.+
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHHH
Confidence 37788999988876543 22333322222222211 1 1 000011222223334444456678888888
Q ss_pred HHHhCCCCC-ChhHHHH-HHHHHHhcCCHHHHHHHHHHHhh
Q 038673 334 MVEKMPVEP-NGGVWGA-LLGACQIHRNPEIAQIAANHLFE 372 (548)
Q Consensus 334 ~~~~m~~~p-~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~ 372 (548)
.|+.|+..+ +..-|.- +-.+....|+.++|..+++.+.+
T Consensus 307 ~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 307 WLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888776322 2222222 22455667778888877777764
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.76 E-value=38 Score=33.19 Aligned_cols=93 Identities=11% Similarity=0.122 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC---CCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHhh---cCCCC----c
Q 038673 314 HYACMVDLLGRAGCLEEALKMVEKMP---VEPN-----GGVWGALLGACQIHRNPEIAQIAANHLFE---LEPDK----I 378 (548)
Q Consensus 314 ~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~p~~----~ 378 (548)
....|...|...|++.+|.+++.+++ ...+ ...+..-+..|...+++..|..+.+++.. ..+.+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 34568899999999999999999874 1222 34555566889999999999999998753 22222 2
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 379 GNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 379 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
..|...+..+...++|.+|.+.|-+..+
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4677888889999999999988776643
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.01 E-value=5.7 Score=31.28 Aligned_cols=56 Identities=13% Similarity=0.063 Sum_probs=30.3
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 038673 38 SLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMI 95 (548)
Q Consensus 38 ~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 95 (548)
+-++.+....+.|++....+.|++|.+.+|+..|.++++-+...- .+...+|..++
T Consensus 74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~l 129 (152)
T 2y69_E 74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHH
Confidence 333444444555666666666666666666666666666554432 33344455444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.57 E-value=11 Score=29.67 Aligned_cols=66 Identities=6% Similarity=-0.102 Sum_probs=44.6
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCC-CchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 341 EPNGGVWGALLGACQIHRN---PEIAQIAANHLFELEPD-KIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 341 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
.|+..+--.+..++.+..+ ...++.+++.+.+..|. ....+..|+-++.+.|++++|.++.+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3554444444445555443 45677888888877774 345666788888888888888888887754
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.64 E-value=8.4 Score=31.71 Aligned_cols=62 Identities=8% Similarity=-0.115 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHC-CCCCCh-------hhHHHHHHHhhccCCcHHHHHHHHHHHHh
Q 038673 20 WTALIRGYILQGHLKDSISLYCSMRRE-GIGPVS-------FTLSALFKACTEVLDVSLGQQIHAQTILL 81 (548)
Q Consensus 20 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-------~~~~~ll~a~~~~~~~~~a~~~~~~~~~~ 81 (548)
+-.-++.+...|.++.|.-+.+.+... +..|+. .++..+..++...+++..|...|.+.++.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 344466777888888888777665442 123332 24566677778888888888888887654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.43 E-value=46 Score=32.60 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHhcCCC----C-C----hhhhHHHHHHHHhcCCHHHHHHHHHHH
Q 038673 226 SALIDMYSKCGSIDDAYRIFVGMKQ----R-N----VFSYSSMILGFAMHGRAHAAIQLFGDM 279 (548)
Q Consensus 226 ~~li~~y~~~g~~~~A~~~~~~~~~----~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m 279 (548)
..|...|...|++.+|.+++..+.. . + +..+..-+..|...+++.+|..++++.
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4445555555555555555554431 0 0 123444444455555555555554444
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=80.02 E-value=39 Score=31.51 Aligned_cols=157 Identities=13% Similarity=0.076 Sum_probs=88.1
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHH----HHHHHcCCCCCHhhHHHHHHHH
Q 038673 223 VVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLF----GDMVKTETKPNGVTFIGVLTAC 298 (548)
Q Consensus 223 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~a~ 298 (548)
.+|.++..=|.+.+++++|.+++..- ...+.++|+...|-++- +-..+.++++|..+...++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34455566677888888888765431 23344555554444433 3444456666666555555554
Q ss_pred hhcCC----------------ccCC--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCH
Q 038673 299 SHVGL----------------KCYG--VSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNP 360 (548)
Q Consensus 299 ~~~~~----------------~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~ 360 (548)
..... .+.| -.-++.....+...|.+.+++.+|..-|- ....+++..+..++..+...+..
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCC
Confidence 43331 1112 22356667778888889999999988773 23233346666666444443322
Q ss_pred HHHHHHHHHHhhcCCCCchhHH-HHHHHHHHcCCchHHHHHHHHHHh
Q 038673 361 EIAQIAANHLFELEPDKIGNYI-ILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 361 ~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
.....|. ..+--|.-.|+...|..+++...+
T Consensus 184 ---------------~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 ---------------HTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ---------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------ccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1111222 222346667888888887766654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 548 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.54 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.48 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.05 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.0 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.0 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.97 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.91 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.9 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.85 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.84 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.81 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.8 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.42 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.4 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.37 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.33 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.3 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.3 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.3 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.3 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.28 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.21 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.2 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.0 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.99 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.98 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.92 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.85 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.83 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.82 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.76 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.73 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.72 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.7 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.68 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.68 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.66 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.6 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.51 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.43 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.37 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.34 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.32 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.12 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.11 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.01 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.89 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.88 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.85 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.79 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.29 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.59 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.53 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.84 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.07 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.43 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 90.03 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.91 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.24 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 87.83 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 84.0 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 81.23 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=5e-20 Score=180.29 Aligned_cols=351 Identities=13% Similarity=0.055 Sum_probs=279.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc
Q 038673 23 LIRGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKC 101 (548)
Q Consensus 23 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 101 (548)
+...+.+.|++++|++.|+++.+. .| +...+..+...+...|++++|...++.+++.. |.+..++..+..+|.+.
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~ 80 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhhh
Confidence 345577889999999999999875 35 56778888889999999999999999999986 67788999999999999
Q ss_pred CChHHHHHHHccCCC---CCeehHHHHHHHHHhCCChHHHHHHHccC---CCCChhHHHHHHHHHHHCCChhHHHHHHHH
Q 038673 102 GFLGCSRKVFDEMPE---RDVVSWTELIVAYANNGDMESAGGLFNEL---PLKDKVAWTAMVTGYVQNAKPREAIEYFER 175 (548)
Q Consensus 102 g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 175 (548)
|++++|...+....+ .+...+..........+....+....... ..................+....+...+.+
T Consensus 81 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHH
Confidence 999999999988765 23333444444444444444444433322 233455666667777788888888888887
Q ss_pred HHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CC
Q 038673 176 MQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RN 252 (548)
Q Consensus 176 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~ 252 (548)
..... +-+...+..+...+...|+++.|...+..+.+..+. +..++..+...|...|++++|...|++... .+
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 236 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN---FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc---cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH
Confidence 76653 335566777788888999999999999998887644 788899999999999999999999987653 45
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 038673 253 VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEAL 332 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 332 (548)
...|..+...+...|++++|+..|++..+ +.|+ +..++..+...+...|++++|.
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~-----------------------~~~~~~~l~~~~~~~~~~~~A~ 291 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPH-----------------------FPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSS-----------------------CHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCC-----------------------CHHHHHHHHHHHHHcCCHHHHH
Confidence 66788888899999999999999999887 4454 3456788888999999999999
Q ss_pred HHHHhCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 333 KMVEKMP--VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 333 ~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
+.++... ...+...+..+...+...|++++|...++++++..|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9988764 3345777888888899999999999999999999999999999999999999999999999988764
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=5.9e-20 Score=179.78 Aligned_cols=360 Identities=14% Similarity=0.073 Sum_probs=296.2
Q ss_pred CCcchHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCcHHHHHHHH
Q 038673 1 MDSFPRLVFEQVK---YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVLDVSLGQQIHA 76 (548)
Q Consensus 1 ~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~ 76 (548)
++++|.+.|+++. +.++..|..+...|.+.|++++|+..|++..+. .| +..++..+...+...|++++|...+.
T Consensus 14 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~g~~~~A~~~~~ 91 (388)
T d1w3ba_ 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEAIEHYR 91 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHhhhhccccccccccc
Confidence 3567888887654 335778999999999999999999999999885 35 56789999999999999999999999
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCC---CCCeehHHHHHHHHHhCCChHHHHHHHccCC---CCCh
Q 038673 77 QTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMP---ERDVVSWTELIVAYANNGDMESAGGLFNELP---LKDK 150 (548)
Q Consensus 77 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~ 150 (548)
...+.. +.+..............+....+........ .................+....+...+.... ..+.
T Consensus 92 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (388)
T d1w3ba_ 92 HALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA 169 (388)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCH
T ss_pred cccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchh
Confidence 999986 5666666666666666666665555544433 2445556666677778888888877766554 3367
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHH
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALID 230 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~ 230 (548)
..+..+...+...|++++|...+++..... +-+...+..+...+...|++++|...+......... ....+..+..
T Consensus 170 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~ 245 (388)
T d1w3ba_ 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN---HAVVHGNLAC 245 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred HHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh---HHHHHHHHHH
Confidence 788889999999999999999999987753 335667888889999999999999999999887755 7788889999
Q ss_pred HHhcCCCHHHHHHHHhcCC---CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCC
Q 038673 231 MYSKCGSIDDAYRIFVGMK---QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG 307 (548)
Q Consensus 231 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 307 (548)
.|.+.|++++|...|++.. ..+..+|..+...+...|++++|++.++..... .|+
T Consensus 246 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~-------------------- 303 (388)
T d1w3ba_ 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPT-------------------- 303 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTT--------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCc--------------------
Confidence 9999999999999998865 346678999999999999999999999998773 233
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 308 VSPSTDHYACMVDLLGRAGCLEEALKMVEKM-PVEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 308 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
+...+..+...+.+.|++++|++.|++. ...|+ ..+|..+..++...|++++|...++++++++|+++.+|..|+
T Consensus 304 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg 380 (388)
T d1w3ba_ 304 ---HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380 (388)
T ss_dssp ---CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred ---cchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4456778888999999999999999986 36676 667888889999999999999999999999999999999999
Q ss_pred HHHHHcCC
Q 038673 386 NIYASAGM 393 (548)
Q Consensus 386 ~~~~~~g~ 393 (548)
.+|.+.|+
T Consensus 381 ~~~~~~~D 388 (388)
T d1w3ba_ 381 NTLKEMQD 388 (388)
T ss_dssp HHHHHTCC
T ss_pred HHHHHcCC
Confidence 99998875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.6e-13 Score=128.92 Aligned_cols=224 Identities=15% Similarity=0.026 Sum_probs=160.5
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcC
Q 038673 156 MVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKC 235 (548)
Q Consensus 156 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~ 235 (548)
....+.+.|++++|+..|++..+.. +-+..++..+..++...|+++.|...+..+.+..+. +...+..+...|...
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD---NQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc---ccccccccccccccc
Confidence 4445666667777777776666542 224555666666666667777777776666665433 566666666677777
Q ss_pred CCHHHHHHHHhcCCC--CC----------------hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038673 236 GSIDDAYRIFVGMKQ--RN----------------VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTA 297 (548)
Q Consensus 236 g~~~~A~~~~~~~~~--~~----------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 297 (548)
|++++|.+.++.... |+ .......+..+...+...+|.+.|.+..+. .|+
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~p~---------- 168 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL--DPT---------- 168 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH--STT----------
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH--hhc----------
Confidence 777777666665431 11 011111223344556677888888887763 333
Q ss_pred HhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038673 298 CSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEP 375 (548)
Q Consensus 298 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 375 (548)
.++..++..+...+...|++++|...+++.. ..|+ ...|..+...+...|++++|...++++++++|
T Consensus 169 -----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 237 (323)
T d1fcha_ 169 -----------SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 237 (323)
T ss_dssp -----------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred -----------ccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence 2245667888899999999999999999863 4555 77888888999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 376 DKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 376 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 238 GYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998876
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.8e-12 Score=122.91 Aligned_cols=258 Identities=14% Similarity=0.086 Sum_probs=157.0
Q ss_pred HHHHHHHcCChHHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChh
Q 038673 94 MIGMYVKCGFLGCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPR 167 (548)
Q Consensus 94 li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~ 167 (548)
....+.+.|++++|.+.|+++.+ | +..+|..+..+|...|++++|...|.+.. +.+...|..+...|...|+++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 104 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 104 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 44455666777777776666543 2 34456666666666666666666665543 234555666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhc
Q 038673 168 EAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVG 247 (548)
Q Consensus 168 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 247 (548)
+|.+.+++.... .|+.............. .+.......+..+.+.+.+.+|...|.+
T Consensus 105 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 105 QACEILRDWLRY--TPAYAHLVTPAEEGAGG---------------------AGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp HHHHHHHHHHHT--STTTGGGCC------------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHh--ccchHHHHHhhhhhhhh---------------------cccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 666666655543 22211110000000000 0000111112223334556666666665
Q ss_pred CCC-----CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHH
Q 038673 248 MKQ-----RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLL 322 (548)
Q Consensus 248 ~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~ 322 (548)
..+ .+...|..+...+...|++++|+..|++.... .|+ +...|..+...|
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~-----------------------~~~~~~~lg~~~ 216 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPN-----------------------DYLLWNKLGATL 216 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccc-----------------------cccchhhhhhcc
Confidence 442 34566777888888899999999999988773 444 345677888889
Q ss_pred HHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchh-----------HHHHHHHHH
Q 038673 323 GRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGN-----------YIILSNIYA 389 (548)
Q Consensus 323 ~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~ 389 (548)
.+.|++++|.+.|++.. ..|+ ..+|..+..+|...|++++|...+++++++.|++... +..+..++.
T Consensus 217 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~ 296 (323)
T d1fcha_ 217 ANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 296 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999998763 4565 6778888899999999999999999999988876543 344566666
Q ss_pred HcCCchHHHH
Q 038673 390 SAGMWDDVSR 399 (548)
Q Consensus 390 ~~g~~~~a~~ 399 (548)
..|+.+.+..
T Consensus 297 ~~~~~d~~~~ 306 (323)
T d1fcha_ 297 MLGQSDAYGA 306 (323)
T ss_dssp HHTCGGGHHH
T ss_pred HcCCHHHHHH
Confidence 6677665543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=6.4e-09 Score=97.44 Aligned_cols=223 Identities=11% Similarity=0.068 Sum_probs=167.6
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCCChHhHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLG-VIKYANWVCEIAEGSGFGPINNVVVGSAL 228 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 228 (548)
...|+.+...+.+.+.+++|+.+++++.+.. +-+...|+....++...| ++++|...++.+++..+. +..+|..+
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~---~~~a~~~~ 118 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK---NYQVWHHR 118 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh---hhhHHHHH
Confidence 3467777788889999999999999998853 334556677777777766 589999999999988765 89999999
Q ss_pred HHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCcc
Q 038673 229 IDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKC 305 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 305 (548)
...+.+.|++++|...|+++.+ .+...|+.+...+...|++++|++.|+++++ +.|+
T Consensus 119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~------------------ 178 (315)
T d2h6fa1 119 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVR------------------ 178 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTT------------------
T ss_pred hHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCc------------------
Confidence 9999999999999999998874 5678899999999999999999999999998 4454
Q ss_pred CCCCcCHHHHHHHHHHHHHcCC------HHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038673 306 YGVSPSTDHYACMVDLLGRAGC------LEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDK 377 (548)
Q Consensus 306 ~~~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 377 (548)
+...|+.+..++.+.+. +++|++.+.+.- ..|+ ...|..+...+.. ...+++...++.+.++.|+.
T Consensus 179 -----n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~ 252 (315)
T d2h6fa1 179 -----NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSH 252 (315)
T ss_dssp -----CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTC
T ss_pred -----cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCc
Confidence 33446655555555444 678888877653 4564 6777776665544 44688889999999888875
Q ss_pred c--hhHHHHHHHHHHc--CCchHHHHHHH
Q 038673 378 I--GNYIILSNIYASA--GMWDDVSRVRR 402 (548)
Q Consensus 378 ~--~~~~~l~~~~~~~--g~~~~a~~~~~ 402 (548)
. ..+..++.+|... +..+.+...++
T Consensus 253 ~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ 281 (315)
T d2h6fa1 253 SSPYLIAFLVDIYEDMLENQCDNKEDILN 281 (315)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4 3455677777543 44444444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=2.1e-08 Score=94.94 Aligned_cols=259 Identities=15% Similarity=0.042 Sum_probs=174.6
Q ss_pred HHHhCCChHHHHHHHccCC----CCC----hhHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCC-CHhhHHHHHHH
Q 038673 128 AYANNGDMESAGGLFNELP----LKD----KVAWTAMVTGYVQNAKPREAIEYFERMQYA----GVET-DYVTLVGVISA 194 (548)
Q Consensus 128 ~~~~~g~~~~A~~~f~~m~----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~ 194 (548)
.+...|++++|++++++.. ..+ ...++.+...|...|++++|+..|++.... +..+ ...++..+...
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 3445555555555554321 111 245667778888888888888888876542 1111 12344556667
Q ss_pred HHccCChhHHHHHHHHHHHc----CCCC-CChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--------CChhhhHHHHH
Q 038673 195 CAQLGVIKYANWVCEIAEGS----GFGP-INNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--------RNVFSYSSMIL 261 (548)
Q Consensus 195 ~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~ 261 (548)
+...|++..+...+...... ...+ ......+..+...|...|+++.+...+..... ....++..+..
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 77888888888888776532 1111 02334666778888999999999888876542 12334555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 262 GFAMHGRAHAAIQLFGDMVKTET--KPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
.+...++..++...+.+...... ...... ....+..+...+...|++++|...+++..
T Consensus 181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 240 (366)
T d1hz4a_ 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDW--------------------ISNANKVRVIYWQMTGDKAAAANWLRHTA 240 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH--------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhcccCch--------------------HHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 77888999999988887655211 111111 12345667778889999999999998874
Q ss_pred -CCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHhh------cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 340 -VEPN-----GGVWGALLGACQIHRNPEIAQIAANHLFE------LEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 340 -~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
..|. ...+..+..++...|+++.|...+++++. ..|.....+..++.+|.+.|++++|.+.+++..+
T Consensus 241 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 241 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2221 33455566889999999999999998875 3355566889999999999999999999988754
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=1.5e-07 Score=88.87 Aligned_cols=291 Identities=10% Similarity=-0.053 Sum_probs=133.5
Q ss_pred hhccCCcHHHHHHHHHHHHhCCCCCC-----hhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChH
Q 038673 62 CTEVLDVSLGQQIHAQTILLGGFTSD-----LYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDME 136 (548)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 136 (548)
+...|++++|.++++..++.. +.+ ..+++.+..+|...|++++|...|++..+
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~-------------------- 79 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ-------------------- 79 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------------
T ss_pred HHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------
Confidence 445566666666666665542 222 22455556666667777777666554321
Q ss_pred HHHHHHccCCCC--ChhHHHHHHHHHHHCCChhHHHHHHHHHHH----CCCC--CC-HhhHHHHHHHHHccCChhHHHHH
Q 038673 137 SAGGLFNELPLK--DKVAWTAMVTGYVQNAKPREAIEYFERMQY----AGVE--TD-YVTLVGVISACAQLGVIKYANWV 207 (548)
Q Consensus 137 ~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~--p~-~~t~~~ll~~~~~~g~~~~a~~~ 207 (548)
+....... ...++..+...+...|++..+...+.+... .+.. +. ...+..+...+...|+++.+...
T Consensus 80 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~ 155 (366)
T d1hz4a_ 80 ----MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 155 (366)
T ss_dssp ----HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHH
Confidence 11111000 112233333444444444444444443321 1111 11 11223333444455555555555
Q ss_pred HHHHHHcCCCC--CChHhHHHHHHHHHhcCCCHHHHHHHHhcCC-------CC---ChhhhHHHHHHHHhcCCHHHHHHH
Q 038673 208 CEIAEGSGFGP--INNVVVGSALIDMYSKCGSIDDAYRIFVGMK-------QR---NVFSYSSMILGFAMHGRAHAAIQL 275 (548)
Q Consensus 208 ~~~~~~~~~~p--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~---~~~~~~~li~~~~~~g~~~~A~~l 275 (548)
+.......... ......+..+...+...|+...+...+.... .. ....+..+...+...|+.++|...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 235 (366)
T d1hz4a_ 156 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 235 (366)
T ss_dssp HHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHH
Confidence 55444322110 0122333344444444555554444443322 10 112334444455556666666666
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-hhHH
Q 038673 276 FGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKM-------PVEPN-GGVW 347 (548)
Q Consensus 276 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~ 347 (548)
+++........+. .....+..+...+...|++++|...+++. ...|+ ...+
T Consensus 236 ~~~~~~~~~~~~~---------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 294 (366)
T d1hz4a_ 236 LRHTAKPEFANNH---------------------FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 294 (366)
T ss_dssp HHHSCCCCCTTCG---------------------GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhccccch---------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHH
Confidence 6554432111111 11223444555666666666666666544 12232 3344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCC---------CchhHHHHHHHHHHcCCchHHHH
Q 038673 348 GALLGACQIHRNPEIAQIAANHLFELEPD---------KIGNYIILSNIYASAGMWDDVSR 399 (548)
Q Consensus 348 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~a~~ 399 (548)
..+-..+...|++++|...+++.+++.+. ....+..+...+...++.+++.+
T Consensus 295 ~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 295 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 55556677777777777777776663322 11133345555666777777654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=7.3e-09 Score=97.02 Aligned_cols=208 Identities=6% Similarity=-0.073 Sum_probs=130.5
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccC-CcHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 038673 18 FLWTALIRGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVL-DVSLGQQIHAQTILLGGFTSDLYVGNTMI 95 (548)
Q Consensus 18 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li 95 (548)
..|+.+-..+.+.+.+++|+++++++++. .| +...|+....++...+ ++++|...++.+++.. +.+..+|+.+.
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~~~~a~~~~~ 119 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--HhhhhHHHHHh
Confidence 35677777788889999999999999984 56 4556777777777765 5899999999998885 77888999999
Q ss_pred HHHHHcCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCC----
Q 038673 96 GMYVKCGFLGCSRKVFDEMPE---RDVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAK---- 165 (548)
Q Consensus 96 ~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---- 165 (548)
..+.+.|++++|...|+++.+ .+..+|..+...+.+.|++++|++.|++.. ..+..+|+.+...+.+.+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchh
Confidence 999999999999888877654 345556666666666666666666665554 2344555555555444443
Q ss_pred --hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH
Q 038673 166 --PREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMY 232 (548)
Q Consensus 166 --~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y 232 (548)
+++|+..+.+..+.. +-+...+..+...+.. ...+++.+.+....+....+ .+...+..++..|
T Consensus 200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~-~~~~~~~~l~~~y 265 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSH-SSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTC-CCHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCc-CCHHHHHHHHHHH
Confidence 345555555544432 2233334333333322 22344555555554444332 2333444444443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.91 E-value=1.1e-09 Score=103.81 Aligned_cols=227 Identities=8% Similarity=-0.086 Sum_probs=158.4
Q ss_pred ChHHHHHHHccCC---CCChhHHHHHHHHHHHCCC--hhHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHccCChhHHHHH
Q 038673 134 DMESAGGLFNELP---LKDKVAWTAMVTGYVQNAK--PREAIEYFERMQYAGVETDYVTLV-GVISACAQLGVIKYANWV 207 (548)
Q Consensus 134 ~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~~ 207 (548)
++++|+..|+... +++...|..+..++...++ +++|+..+.++.... +++...+. .....+...+..+.|...
T Consensus 88 ~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~ 166 (334)
T d1dcea1 88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (334)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHH
Confidence 3444555554432 4466777777777766654 788998888887753 33444443 444566778889999999
Q ss_pred HHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 038673 208 CEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPN 287 (548)
Q Consensus 208 ~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 287 (548)
++.+++..+. +...|+.+...|.+.|++++|...+....+-..... .....+...+..+++...+...... .|+
T Consensus 167 ~~~~i~~~p~---~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~a~~~~~~~l~~--~~~ 240 (334)
T d1dcea1 167 TDSLITRNFS---NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL-ELVQNAFFTDPNDQSAWFYHRWLLG--RAE 240 (334)
T ss_dssp HHTTTTTTCC---CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHH-HHHHHHHHHCSSCSHHHHHHHHHHS--CCC
T ss_pred HHHHHHcCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHH-HHHHHHHHhcchhHHHHHHHHHHHh--Ccc
Confidence 9888887755 888999999999999998887766665543222211 2233345556667777777776663 232
Q ss_pred HhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHH
Q 038673 288 GVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQI 365 (548)
Q Consensus 288 ~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~ 365 (548)
. ...+..+...+...|+.++|...+.+.. ..|+ ..+|..+..++...|+.++|..
T Consensus 241 ~-----------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~ 297 (334)
T d1dcea1 241 P-----------------------LFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 297 (334)
T ss_dssp C-----------------------SSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH
T ss_pred h-----------------------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 1 2234455667777889999999888764 4454 5667777789999999999999
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHH
Q 038673 366 AANHLFELEPDKIGNYIILSNIYAS 390 (548)
Q Consensus 366 ~~~~~~~~~p~~~~~~~~l~~~~~~ 390 (548)
.++++++++|.+...|..|...+.-
T Consensus 298 ~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 298 YFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcccHHHHHHHHHHHhH
Confidence 9999999999988888888766653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.90 E-value=5.7e-08 Score=90.55 Aligned_cols=157 Identities=10% Similarity=-0.039 Sum_probs=112.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCC---CCC-hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH-HHH
Q 038673 122 WTELIVAYANNGDMESAGGLFNELP---LKD-KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVIS-ACA 196 (548)
Q Consensus 122 ~~~li~~~~~~g~~~~A~~~f~~m~---~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-~~~ 196 (548)
|...+..+.+.|++++|..+|+++. ..+ ...|...+....+.|+.++|.++|+++.+.+ +.+...|..... -+.
T Consensus 102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~ 180 (308)
T d2onda1 102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYY 180 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 3334444444444444444444432 122 3468888888888899999999999887764 223333333332 234
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC-------ChhhhHHHHHHHHhcCCH
Q 038673 197 QLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR-------NVFSYSSMILGFAMHGRA 269 (548)
Q Consensus 197 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~ 269 (548)
..|+.+.|..+++.+.+..+. +...+...++.+.+.|+++.|+.+|++..+. ....|...+.--..+|+.
T Consensus 181 ~~~~~~~a~~i~e~~l~~~p~---~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~ 257 (308)
T d2onda1 181 CSKDKSVAFKIFELGLKKYGD---IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred hccCHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCH
Confidence 568899999999999987544 8899999999999999999999999986431 234788888888899999
Q ss_pred HHHHHHHHHHHHc
Q 038673 270 HAAIQLFGDMVKT 282 (548)
Q Consensus 270 ~~A~~l~~~m~~~ 282 (548)
+.+.++++++.+.
T Consensus 258 ~~~~~~~~r~~~~ 270 (308)
T d2onda1 258 ASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998773
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=5.8e-08 Score=87.79 Aligned_cols=113 Identities=14% Similarity=0.027 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHHHCCC-CC--CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHH
Q 038673 166 PREAIEYFERMQYAGV-ET--DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY 242 (548)
Q Consensus 166 ~~~A~~l~~~m~~~g~-~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~ 242 (548)
.+.++.-+++...... .+ ...++..+..++.+.|++++|...|+.+++..+. +..+++.+..+|.+.|++++|.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~---~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC---CHHHHhhhchHHHHHHHHHHhh
Confidence 3445555555544321 11 1224555566667777777777777777766543 6777777777777777777777
Q ss_pred HHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 243 RIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 243 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
..|+++.+ .+..+|..+...|...|++++|++.|++..+
T Consensus 92 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 92 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77776653 2345666677777777777777777777766
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=1.1e-07 Score=85.77 Aligned_cols=202 Identities=9% Similarity=-0.161 Sum_probs=131.4
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
..+|..+...|.+.|++++|+..|++..+.. +-+..++..+..++...|++++|...|+.+++..+. +..++..+.
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg 112 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYAHLNRG 112 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh---hhhhHHHHH
Confidence 4467777888888889999988888887753 335667888888888889999999999888887644 677888888
Q ss_pred HHHhcCCCHHHHHHHHhcCCC--C-ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccC
Q 038673 230 DMYSKCGSIDDAYRIFVGMKQ--R-NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCY 306 (548)
Q Consensus 230 ~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 306 (548)
.+|...|++++|.+.|+...+ | +......+..++...+..+.+..+....... .++...
T Consensus 113 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------------- 174 (259)
T d1xnfa_ 113 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWG---------------- 174 (259)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTH----------------
T ss_pred HHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--chhhhh----------------
Confidence 888889999999888887763 2 3333333344455556555555555555442 222111
Q ss_pred CCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchh
Q 038673 307 GVSPSTDHYACMVDLLGR----AGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGN 380 (548)
Q Consensus 307 ~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 380 (548)
++ ++..+.. .+..+.+...+.... ..|+ ..+|..+-..+...|+++.|...++++++.+|++...
T Consensus 175 --------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 245 (259)
T d1xnfa_ 175 --------WN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 245 (259)
T ss_dssp --------HH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred --------hh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 11 1111111 112222222221111 1233 3456667788899999999999999999999987644
Q ss_pred HH
Q 038673 381 YI 382 (548)
Q Consensus 381 ~~ 382 (548)
|.
T Consensus 246 ~~ 247 (259)
T d1xnfa_ 246 HR 247 (259)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.81 E-value=2.3e-07 Score=86.29 Aligned_cols=181 Identities=9% Similarity=-0.032 Sum_probs=139.4
Q ss_pred ChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-C-hhhhHHHHHHHHhcCCHHHHHHH
Q 038673 200 VIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--R-N-VFSYSSMILGFAMHGRAHAAIQL 275 (548)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~l 275 (548)
..+.+..++++.++...+ .+...+...+..+.+.|+++.|..+|+++.+ | + ...|...+....+.|+.+.|.++
T Consensus 79 ~~~~a~~i~~ral~~~~p--~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 79 FSDEAANIYERAISTLLK--KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHTTTTT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 457788889888875433 5778889999999999999999999998754 2 3 34688999999999999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHH-HHHcCCHHHHHHHHHhCC--CCCChhHHHHHHH
Q 038673 276 FGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDL-LGRAGCLEEALKMVEKMP--VEPNGGVWGALLG 352 (548)
Q Consensus 276 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~ 352 (548)
|+++.+. .|+. ...|...... +...|+.+.|..+|+.+. ...+...|...+.
T Consensus 157 ~~~al~~--~~~~-----------------------~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~ 211 (308)
T d2onda1 157 FKKARED--ARTR-----------------------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID 211 (308)
T ss_dssp HHHHHTS--TTCC-----------------------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHh--CCCc-----------------------HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9998874 2321 2223333333 234588999999998874 2234788999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCc----hhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 353 ACQIHRNPEIAQIAANHLFELEPDKI----GNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 353 ~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
.+...|+.+.|..+|+++++..|.++ ..|...+..-...|+.+.+.++.+++.+.
T Consensus 212 ~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 212 YLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999998766543 36777777778889999999999988653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.80 E-value=2.3e-08 Score=94.52 Aligned_cols=258 Identities=7% Similarity=-0.023 Sum_probs=189.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhh-HHHH---HHHhhc-------cCCcHHHHHHHHHHHHhCCCCCCh
Q 038673 20 WTALIRGYILQGHLKDSISLYCSMRREGIGPVSFT-LSAL---FKACTE-------VLDVSLGQQIHAQTILLGGFTSDL 88 (548)
Q Consensus 20 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l---l~a~~~-------~~~~~~a~~~~~~~~~~~~~~~~~ 88 (548)
++.++...-..+..++|++++++..+. .|+..+ |+.. +..... .+.++++..+++.+++.. +.+.
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~--pk~~ 107 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSY 107 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC--CCcH
Confidence 444444444445568999999999874 576543 4332 233222 344778999999999875 7788
Q ss_pred hHHHHHHHHHHHcCC--hHHHHHHHccCCC---CCeehHHHH-HHHHHhCCChHHHHHHHccCCC---CChhHHHHHHHH
Q 038673 89 YVGNTMIGMYVKCGF--LGCSRKVFDEMPE---RDVVSWTEL-IVAYANNGDMESAGGLFNELPL---KDKVAWTAMVTG 159 (548)
Q Consensus 89 ~~~~~li~~~~~~g~--~~~A~~~~~~m~~---~~~~~~~~l-i~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~ 159 (548)
..+..+..++...+. .++|...++++.+ ++...|... ...+...+..++|+..++.... .+..+|+.+...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~ 187 (334)
T d1dcea1 108 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL 187 (334)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 888888888877764 7899999988754 455566544 4677788999999999998874 367889999999
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHH
Q 038673 160 YVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSID 239 (548)
Q Consensus 160 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~ 239 (548)
+.+.|++++|...+...... .|+. ......+...+..+++...+......... +...+..+...+...|+.+
T Consensus 188 ~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~---~~~~~~~l~~~~~~~~~~~ 259 (334)
T d1dcea1 188 LPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAE---PLFRCELSVEKSTVLQSEL 259 (334)
T ss_dssp HHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCC---CSSSCCCCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcc---hhhHHHHHHHHHHHHhhHH
Confidence 99999999887666544332 2221 22334455667778888888888777644 6666777888888899999
Q ss_pred HHHHHHhcCCCCCh---hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH
Q 038673 240 DAYRIFVGMKQRNV---FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTF 291 (548)
Q Consensus 240 ~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 291 (548)
+|...|.+..+.++ .+|..+...|...|+.++|++.|++..+ +.|+...|
T Consensus 260 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y 312 (334)
T d1dcea1 260 ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAY 312 (334)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHH
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHH
Confidence 99999999887655 5677788889999999999999999988 56664443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.42 E-value=6.6e-07 Score=77.11 Aligned_cols=97 Identities=13% Similarity=0.036 Sum_probs=87.9
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 038673 310 PSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNI 387 (548)
Q Consensus 310 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 387 (548)
|+...+......|.+.|++++|+..|++.- ..|+ +..|..+..+|...|+++.|...++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 666777788899999999999999998763 4555 77888888999999999999999999999999999999999999
Q ss_pred HHHcCCchHHHHHHHHHHh
Q 038673 388 YASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 388 ~~~~g~~~~a~~~~~~m~~ 406 (548)
|...|++++|...+++..+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=2.1e-06 Score=66.66 Aligned_cols=102 Identities=17% Similarity=0.118 Sum_probs=61.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-
Q 038673 261 LGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP- 339 (548)
Q Consensus 261 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 339 (548)
..+...|++++|+..|++.++ ..|+ +...|..+..+|...|++++|+..+++.-
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~--~~p~-----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 65 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIK--LDPH-----------------------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 65 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTT-----------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh--cCCc-----------------------chhhhhcccccccccccccccchhhhhHHH
Confidence 345566666777776666665 2333 33446666666666666666666666553
Q ss_pred CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 038673 340 VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNI 387 (548)
Q Consensus 340 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 387 (548)
+.| +...|..+..++...|++++|...++++++++|+++..+..+.++
T Consensus 66 ~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 66 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 233 355566666666666666666666666666666666555554443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=1.6e-05 Score=67.66 Aligned_cols=128 Identities=9% Similarity=-0.039 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC
Q 038673 224 VGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL 303 (548)
Q Consensus 224 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 303 (548)
.|+- ...+...|+++.|.+.|.++..++..+|..+...|...|++++|++.|++.++ +.|+
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~---------------- 68 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKH---------------- 68 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT----------------
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--Hhhh----------------
Confidence 4443 56677889999999999999888888999999999999999999999999987 4555
Q ss_pred ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCC----------------hhHHHHHHHHHHhcCCHHHHHH
Q 038673 304 KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VEPN----------------GGVWGALLGACQIHRNPEIAQI 365 (548)
Q Consensus 304 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~----------------~~~~~~ll~~~~~~~~~~~a~~ 365 (548)
+...|..+..+|.+.|++++|.+.|++.- .+++ ..++..+-.++...|+++.|.+
T Consensus 69 -------~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~ 141 (192)
T d1hh8a_ 69 -------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE 141 (192)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHH
Confidence 34568888889999999999998887641 1111 2344556677889999999999
Q ss_pred HHHHHhhcCCCC
Q 038673 366 AANHLFELEPDK 377 (548)
Q Consensus 366 ~~~~~~~~~p~~ 377 (548)
.++.++++.|..
T Consensus 142 ~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 142 QLALATSMKSEP 153 (192)
T ss_dssp HHHHHHTTCCSG
T ss_pred HHHHHHhcCCCc
Confidence 999999988874
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.33 E-value=2.3e-05 Score=71.64 Aligned_cols=195 Identities=8% Similarity=-0.053 Sum_probs=112.3
Q ss_pred HHhhccCCcHHHHHHHHHHHHhC---CCCC-ChhHHHHHHHHHHHcCChHHHHHHHccCCC-----CC----eehHHHHH
Q 038673 60 KACTEVLDVSLGQQIHAQTILLG---GFTS-DLYVGNTMIGMYVKCGFLGCSRKVFDEMPE-----RD----VVSWTELI 126 (548)
Q Consensus 60 ~a~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li 126 (548)
..+...+++++|...|.++.... +-++ -..+|+.+..+|.+.|++++|.+.+++..+ .+ ..++..+.
T Consensus 45 ~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 124 (290)
T d1qqea_ 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (290)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHH
Confidence 34555666666666666655431 0111 124566666677777777777666665432 11 22344455
Q ss_pred HHHHh-CCChHHHHHHHccCC-------CC--ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC-----H-hhHHH
Q 038673 127 VAYAN-NGDMESAGGLFNELP-------LK--DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD-----Y-VTLVG 190 (548)
Q Consensus 127 ~~~~~-~g~~~~A~~~f~~m~-------~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~-~t~~~ 190 (548)
..|.. .|++++|.+.+.+.. .+ -..+|..+...|...|++++|+..|++......... . ..+..
T Consensus 125 ~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (290)
T d1qqea_ 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (290)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHH
Confidence 55533 477777777765542 11 134577788888999999999999988766431111 1 11233
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCC--ChHhHHHHHHHHHhc--CCCHHHHHHHHhcCCCCChh
Q 038673 191 VISACAQLGVIKYANWVCEIAEGSGFGPI--NNVVVGSALIDMYSK--CGSIDDAYRIFVGMKQRNVF 254 (548)
Q Consensus 191 ll~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~~~li~~y~~--~g~~~~A~~~~~~~~~~~~~ 254 (548)
.+..+...++++.|...++...+..+... ........|+.+|.. .+.+++|...|+++.+-|..
T Consensus 205 ~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~ 272 (290)
T d1qqea_ 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (290)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHH
Confidence 44455667888888888887766543210 012344556666655 34578888888877766643
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=4e-06 Score=69.14 Aligned_cols=118 Identities=8% Similarity=0.041 Sum_probs=95.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 038673 258 SMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEK 337 (548)
Q Consensus 258 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 337 (548)
.....|.+.|++++|+..|++.++ +.|+ +...|..+..+|...|++++|.+.|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~--~~p~-----------------------~~~~~~~lg~~~~~~~~~~~A~~~~~k 69 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIE--LNPS-----------------------NAIYYGNRSLAYLRTECYGYALGDATR 69 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSTT-----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccc--cchh-----------------------hhhhhhhhHHHHHhccccchHHHHHHH
Confidence 345678899999999999999998 4555 445688899999999999999999998
Q ss_pred CC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH--HHcCCchHHHHH
Q 038673 338 MP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIY--ASAGMWDDVSRV 400 (548)
Q Consensus 338 m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~ 400 (548)
.- +.|+ ...|..+..++...|++++|...+++++++.|+++..+..+..+. ...+.+++|...
T Consensus 70 al~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 70 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 74 4565 678989999999999999999999999999999988877776554 333445555543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=2.8e-06 Score=65.98 Aligned_cols=90 Identities=12% Similarity=0.078 Sum_probs=81.5
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCch
Q 038673 318 MVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWD 395 (548)
Q Consensus 318 li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 395 (548)
-...+.+.|++++|+..|++.- ..|+ ...|..+-.++...|+++.|+..++++++++|+++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 4567889999999999999873 4454 7788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 038673 396 DVSRVRRLLKMT 407 (548)
Q Consensus 396 ~a~~~~~~m~~~ 407 (548)
+|...++...+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=1.1e-05 Score=68.74 Aligned_cols=135 Identities=13% Similarity=-0.077 Sum_probs=64.9
Q ss_pred HHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHH
Q 038673 128 AYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWV 207 (548)
Q Consensus 128 ~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 207 (548)
.+...|++++|++.|.++.+++..+|..+...|...|++++|++.|++..+.. +-+...|..+..++.+.|++++|...
T Consensus 14 ~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~ 92 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKD 92 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHHH
Confidence 34455555555555555555555555555555555555555555555554432 22333444444455555555555555
Q ss_pred HHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 208 CEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 208 ~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
|+..+..... .....+ ...|. ..+ ....++..+..++...|++++|.+.|......
T Consensus 93 ~~kAl~~~~~--n~~~~~-------~~~~~----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 93 LKEALIQLRG--NQLIDY-------KILGL----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHTTTT--CSEEEC-------GGGTB----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCcc--CchHHH-------HHhhh----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5544432211 000000 00000 000 00123445666777888888888888777664
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.30 E-value=8.5e-07 Score=68.41 Aligned_cols=88 Identities=20% Similarity=0.095 Sum_probs=80.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCc
Q 038673 317 CMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMW 394 (548)
Q Consensus 317 ~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 394 (548)
.+...+.+.|++++|...|++.. ..|+ ...|..+..++...|+++.|+..++++++++|+++.++..|+.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 35667889999999999999874 5665 888888899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 038673 395 DDVSRVRRLL 404 (548)
Q Consensus 395 ~~a~~~~~~m 404 (548)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.28 E-value=6.6e-06 Score=75.36 Aligned_cols=204 Identities=13% Similarity=-0.020 Sum_probs=132.1
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHC----CCCCC-HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC---CCChHhH
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQYA----GVETD-YVTLVGVISACAQLGVIKYANWVCEIAEGSGFG---PINNVVV 224 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---p~~~~~~ 224 (548)
|......|...|++++|.+.|.+.... +-+++ ..+|..+..+|.+.|++++|...++...+.... +.....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 445566777888888888888776542 21222 346777888888888898888888876543111 0023456
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHhcCCC-----CC----hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 038673 225 GSALIDMYSK-CGSIDDAYRIFVGMKQ-----RN----VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGV 294 (548)
Q Consensus 225 ~~~li~~y~~-~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 294 (548)
+..+...|.. .|++++|...+++..+ .+ ..+|..+...|...|++++|+..|++..... |+...
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~--~~~~~---- 193 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS--MGNRL---- 193 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--SSCTT----
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhC--ccchh----
Confidence 6667777744 6999999998887642 11 2457788899999999999999999988742 22110
Q ss_pred HHHHhhcCCccCCCCcCH-HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC------hhHHHHHHHHHHhc--CCHHHHH
Q 038673 295 LTACSHVGLKCYGVSPST-DHYACMVDLLGRAGCLEEALKMVEKMP-VEPN------GGVWGALLGACQIH--RNPEIAQ 364 (548)
Q Consensus 295 l~a~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~------~~~~~~ll~~~~~~--~~~~~a~ 364 (548)
..... ..+...+..+...|+++.|.+.+++.. +.|+ ......++.++... +.+++|.
T Consensus 194 -------------~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai 260 (290)
T d1qqea_ 194 -------------SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHC 260 (290)
T ss_dssp -------------TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHH
T ss_pred -------------hhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 01111 224445556778899999999999884 3332 22345566665542 3467777
Q ss_pred HHHHHHhhcCC
Q 038673 365 IAANHLFELEP 375 (548)
Q Consensus 365 ~~~~~~~~~~p 375 (548)
..|+.+.+++|
T Consensus 261 ~~y~~~~~lD~ 271 (290)
T d1qqea_ 261 KEFDNFMRLDK 271 (290)
T ss_dssp HHHTTSSCCCH
T ss_pred HHHHHHhhcCH
Confidence 77776666654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=4.2e-06 Score=68.99 Aligned_cols=93 Identities=16% Similarity=0.064 Sum_probs=83.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAG 392 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 392 (548)
+......|.+.|++++|+..|++.- +.|+ ...|..+..++...|+++.|...++++++++|++..+|..++.+|...|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 4445667889999999999999874 4565 7788888899999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhC
Q 038673 393 MWDDVSRVRRLLKMT 407 (548)
Q Consensus 393 ~~~~a~~~~~~m~~~ 407 (548)
++++|...+++..+.
T Consensus 93 ~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 93 KFRAALRDYETVVKV 107 (159)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999988764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.20 E-value=3e-06 Score=72.82 Aligned_cols=110 Identities=10% Similarity=-0.067 Sum_probs=72.4
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 038673 253 VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEAL 332 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 332 (548)
..........|.+.|++++|+..|++.++ +.|+ +...|..+..+|.+.|++++|+
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~-----------------------~~~~~~~lg~~y~~~~~~~~Ai 58 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPL-----------------------VAVYYTNRALCYLKMQQPEQAL 58 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSC-----------------------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC-----------------------CHHHHHhHHHHHhhhhhhhhhh
Confidence 33344455667777777777777777766 3344 3345667777777777777777
Q ss_pred HHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 038673 333 KMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNI 387 (548)
Q Consensus 333 ~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 387 (548)
..|++.. +.|+ ..+|..+..++...|+++.|...+++++++.|++...+...+..
T Consensus 59 ~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (201)
T d2c2la1 59 ADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (201)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 7777664 5565 56677777777788888888888887777766554443333333
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.00 E-value=0.0032 Score=55.64 Aligned_cols=225 Identities=13% Similarity=-0.005 Sum_probs=131.0
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCChHhH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQ----LGVIKYANWVCEIAEGSGFGPINNVVV 224 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~ 224 (548)
|+..+..+...+.+.+++++|++.|++..+.| |...+..|...+.. ..+...+...+....+.+. ...
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~-----~~a 72 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-----SNG 72 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----HHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc-----cch
Confidence 34556666667777778888888888777665 34444445555543 4467777777777766552 233
Q ss_pred HHHHHHHHhc----CCCHHHHHHHHhcCCCC-ChhhhHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038673 225 GSALIDMYSK----CGSIDDAYRIFVGMKQR-NVFSYSSMILGFAM----HGRAHAAIQLFGDMVKTETKPNGVTFIGVL 295 (548)
Q Consensus 225 ~~~li~~y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 295 (548)
...|...+.. ..+.+.|...++...+. .......+...+.. ......+...+...... .
T Consensus 73 ~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~--------- 140 (265)
T d1ouva_ 73 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---N--------- 140 (265)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---T---------
T ss_pred hhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---c---------
Confidence 3344444332 45667777766655432 22222223223332 33455566666555442 1
Q ss_pred HHHhhcCCccCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHH
Q 038673 296 TACSHVGLKCYGVSPSTDHYACMVDLLGR----AGCLEEALKMVEKMPVEPNGGVWGALLGACQI----HRNPEIAQIAA 367 (548)
Q Consensus 296 ~a~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~ 367 (548)
+...+..|...|.. ..+...+...++...-..+......+-..+.. ..+++.|...|
T Consensus 141 ---------------~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~ 205 (265)
T d1ouva_ 141 ---------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARY 205 (265)
T ss_dssp ---------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred ---------------ccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhH
Confidence 22233334444432 34455555555544322344444444444433 56899999999
Q ss_pred HHHhhcCCCCchhHHHHHHHHHH----cCCchHHHHHHHHHHhCCCc
Q 038673 368 NHLFELEPDKIGNYIILSNIYAS----AGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 368 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 410 (548)
++..+.. ++..+..|+.+|.+ ..+.++|.+.+++..+.|..
T Consensus 206 ~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 206 SKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 9988764 45688889999886 34799999999999887753
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=6.9e-05 Score=62.12 Aligned_cols=127 Identities=10% Similarity=-0.015 Sum_probs=91.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHH
Q 038673 256 YSSMILGFAMHGRAHAAIQLFGDMVKTET-----KPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEE 330 (548)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 330 (548)
+......+.+.|++++|+..|++.+..-- ..........+ ...+|+.+..+|.+.|++++
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~---------------~~~~~~nla~~y~k~~~~~~ 80 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL---------------RLASHLNLAMCHLKLQAFSA 80 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHH---------------HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchh---------------HHHHHHHHHHHHHhhhhccc
Confidence 33445566777788888887777765310 00000000000 12457778889999999999
Q ss_pred HHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHH
Q 038673 331 ALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDV 397 (548)
Q Consensus 331 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 397 (548)
|+..+++.- +.| ++..|..+..++...|+++.|...++++++++|+++.+...+..+..+.+...+.
T Consensus 81 A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 81 AIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999998774 566 4788888889999999999999999999999999999988888887666554443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=1.8e-05 Score=61.51 Aligned_cols=105 Identities=10% Similarity=-0.050 Sum_probs=80.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCC---HHHHHH
Q 038673 257 SSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGC---LEEALK 333 (548)
Q Consensus 257 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~ 333 (548)
..+++.+...+++++|.+.|++... ..|+ ++.++..+..++.+.++ +++|+.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~-----------------------~~~~~~n~a~~L~~s~~~~d~~~Ai~ 57 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA--AGSV-----------------------SKSTQFEYAWCLVRTRYNDDIRKGIV 57 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HSCC-----------------------CHHHHHHHHHHHTTSSSHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh--hCCC-----------------------CHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 4577788889999999999999988 3444 44566777777776554 557999
Q ss_pred HHHhCC-CCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 038673 334 MVEKMP-VEPNG---GVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSN 386 (548)
Q Consensus 334 ~~~~m~-~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 386 (548)
++++.- ..|+. .+|..|..+|...|+++.|.+.++++++++|++..+...+..
T Consensus 58 ~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~ 114 (122)
T d1nzna_ 58 LLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 114 (122)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 998874 34443 366677789999999999999999999999999865555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=5.3e-05 Score=58.78 Aligned_cols=102 Identities=6% Similarity=-0.049 Sum_probs=80.4
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCH---HHHHHHHhcCCCCC--h---hhhHHHH
Q 038673 189 VGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSI---DDAYRIFVGMKQRN--V---FSYSSMI 260 (548)
Q Consensus 189 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~---~~A~~~~~~~~~~~--~---~~~~~li 260 (548)
..+++.+...+++++|.+.|+..++.++. +..++..+..++.+.++. ++|..+|+++.+.+ . .+|..+.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~---~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV---SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 45777888888999999999999988755 888888899999876654 46899999887532 2 3677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038673 261 LGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVL 295 (548)
Q Consensus 261 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 295 (548)
.+|.+.|++++|++.|+++++ +.|+......+.
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~ 112 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQ--TEPQNNQAKELE 112 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHH--hCcCCHHHHHHH
Confidence 899999999999999999998 677765443333
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.85 E-value=0.0018 Score=57.33 Aligned_cols=226 Identities=12% Similarity=-0.051 Sum_probs=121.5
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhc----cCCcHHHHHHHHHHHHhCCCCCChhHH
Q 038673 16 NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTE----VLDVSLGQQIHAQTILLGGFTSDLYVG 91 (548)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 91 (548)
|+..|..|-..+-+.+++++|++.|++..+.| |...+..|-..+.. ..+...+...+....+.+ +....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~----~~~a~ 73 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGC 73 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----ccchh
Confidence 45567778778888999999999999998876 55566666666554 567788888888877765 33444
Q ss_pred HHHHHHHHH----cCChHHHHHHHccCCCC-CeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCCh
Q 038673 92 NTMIGMYVK----CGFLGCSRKVFDEMPER-DVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKP 166 (548)
Q Consensus 92 ~~li~~~~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 166 (548)
..|...+.. ..+.+.|...++...+. .......+...+... .......
T Consensus 74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~---------------------------~~~~~~~ 126 (265)
T d1ouva_ 74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDG---------------------------KVVTRDF 126 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC---------------------------SSSCCCH
T ss_pred hccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCC---------------------------Ccccchh
Confidence 444444433 23455565555443221 111111111111110 0012233
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc----CCCH
Q 038673 167 REAIEYFERMQYAGVETDYVTLVGVISACAQ----LGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK----CGSI 238 (548)
Q Consensus 167 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~----~g~~ 238 (548)
..+...+......+ +...+..+...+.. ..+...+...++...+.| +......|..+|.. ..++
T Consensus 127 ~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g-----~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 127 KKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-----DSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTCSSCCCH
T ss_pred HHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhcccccc-----ccccccchhhhcccCcccccch
Confidence 34444444433322 33334444444432 234455555555555543 33344444444443 4566
Q ss_pred HHHHHHHhcCCC-CChhhhHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 038673 239 DDAYRIFVGMKQ-RNVFSYSSMILGFAM----HGRAHAAIQLFGDMVKTE 283 (548)
Q Consensus 239 ~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 283 (548)
+.|...|....+ .++..+..|...|.. ..+.++|++.|++....|
T Consensus 199 ~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 199 KEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 677776666543 345555555555543 336677777777776654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.83 E-value=4.2e-05 Score=58.47 Aligned_cols=90 Identities=13% Similarity=-0.088 Sum_probs=59.1
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHh
Q 038673 154 TAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYS 233 (548)
Q Consensus 154 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~ 233 (548)
-.+...+.+.|++++|+..|++..... +-+...|..+..++.+.|++++|...++.+++..+. +..++..+...|.
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~la~~y~ 95 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc---cccchHHHHHHHH
Confidence 344556667777777777777766543 224556666666677777777777777777666533 6666677777777
Q ss_pred cCCCHHHHHHHHhc
Q 038673 234 KCGSIDDAYRIFVG 247 (548)
Q Consensus 234 ~~g~~~~A~~~~~~ 247 (548)
..|++++|.+.|++
T Consensus 96 ~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 96 NEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 77777777766654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.82 E-value=0.004 Score=56.89 Aligned_cols=156 Identities=13% Similarity=0.091 Sum_probs=84.0
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHhcCC---CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038673 222 VVVGSALIDMYSKCGSIDDAYRIFVGMK---QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTAC 298 (548)
Q Consensus 222 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 298 (548)
+.....++..|-..|.+++...+++... ..+...++-++..|++.+. ++-++ .+...+-. .....++..|
T Consensus 99 ~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~kl~e---~l~~~s~~---y~~~k~~~~c 171 (336)
T d1b89a_ 99 ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QKMRE---HLELFWSR---VNIPKVLRAA 171 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HHHHH---HHHHHSTT---SCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-HHHHH---HHHhcccc---CCHHHHHHHH
Confidence 3333445555555555555555555432 2344445555555555432 22222 22221111 2222334444
Q ss_pred hhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 299 SHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 299 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
...+ .|.-++-.|.+.|.+++|..++-+-+ |+..-....+..+.+..+++..-++....++..|.
T Consensus 172 ~~~~-----------l~~elv~Ly~~~~~~~~A~~~~i~~~--~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~-- 236 (336)
T d1b89a_ 172 EQAH-----------LWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL-- 236 (336)
T ss_dssp HTTT-----------CHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGG--
T ss_pred HHcC-----------ChHHHHHHHHhcCCHHHHHHHHHHcc--hhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCHH--
Confidence 4333 25667778888888888877765543 34444555667788888888888877777776554
Q ss_pred hhHHHHHHHHHHcCCchHHHHH
Q 038673 379 GNYIILSNIYASAGMWDDVSRV 400 (548)
Q Consensus 379 ~~~~~l~~~~~~~g~~~~a~~~ 400 (548)
....|+......-+..++.+.
T Consensus 237 -~i~~lL~~v~~~~d~~r~V~~ 257 (336)
T d1b89a_ 237 -LLNDLLMVLSPRLDHTRAVNY 257 (336)
T ss_dssp -GHHHHHHHHGGGCCHHHHHHH
T ss_pred -HHHHHHHHhccCCCHHHHHHH
Confidence 444455444444444444333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=0.00014 Score=60.19 Aligned_cols=93 Identities=11% Similarity=-0.052 Sum_probs=77.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-------------hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKM----PVEPN-------------GGVWGALLGACQIHRNPEIAQIAANHLFELEPDK 377 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 377 (548)
+......+.+.|++++|+..|++. +..+. ..+|..+..+|.+.|+++.|+..++.+++++|++
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~ 95 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN 95 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccc
Confidence 445567888999999999999765 21111 2345556677899999999999999999999999
Q ss_pred chhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 378 IGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 378 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
+.++..++.+|...|++++|...++...+.
T Consensus 96 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 96 EKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999998763
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.73 E-value=0.00028 Score=58.14 Aligned_cols=92 Identities=11% Similarity=0.002 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHc
Q 038673 314 HYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASA 391 (548)
Q Consensus 314 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 391 (548)
.|+.+..+|.+.|++++|+..+++.. +.| +...|..+..++...|+++.|...++++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 46667888999999999999998874 445 4788888889999999999999999999999999998888888877666
Q ss_pred CCchH-HHHHHHHHH
Q 038673 392 GMWDD-VSRVRRLLK 405 (548)
Q Consensus 392 g~~~~-a~~~~~~m~ 405 (548)
+...+ ..+++..|-
T Consensus 146 ~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 146 KEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 55433 445555553
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=6.4e-05 Score=58.96 Aligned_cols=91 Identities=11% Similarity=0.044 Sum_probs=76.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch-------hHHHHH
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG-------NYIILS 385 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 385 (548)
+-.+...+.+.|++++|++.|++.. +.|+ ...|..+-.++...|+++.|...++++++++|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 4557788999999999999998874 4555 778888889999999999999999999998888765 455677
Q ss_pred HHHHHcCCchHHHHHHHHHH
Q 038673 386 NIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 386 ~~~~~~g~~~~a~~~~~~m~ 405 (548)
..+...+++++|.+.++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 77888889999999987764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.70 E-value=0.00012 Score=61.14 Aligned_cols=97 Identities=15% Similarity=-0.001 Sum_probs=79.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCC-CCC-----C------------------hhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038673 317 CMVDLLGRAGCLEEALKMVEKMP-VEP-----N------------------GGVWGALLGACQIHRNPEIAQIAANHLFE 372 (548)
Q Consensus 317 ~li~~~~~~g~~~~A~~~~~~m~-~~p-----~------------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 372 (548)
.........|++++|.+.|.+.- +.| + ...+..+..++...|+++.|...++++++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 95 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF 95 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 34456788999999999988751 111 1 13456677889999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH-----hCCCccCC
Q 038673 373 LEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK-----MTGLKKNP 413 (548)
Q Consensus 373 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~ 413 (548)
.+|.+...|..++.+|.+.|++++|++.|+++. +.|+.|.+
T Consensus 96 ~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 96 EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 999999999999999999999999999999874 45776543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.68 E-value=0.00036 Score=56.38 Aligned_cols=92 Identities=8% Similarity=-0.033 Sum_probs=76.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-------CCCCh-----------hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP-------VEPNG-----------GVWGALLGACQIHRNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 376 (548)
+..-...+.+.|++++|+..|++.- ..++. .+|..+..++.+.|+++.|...++++++++|.
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~ 99 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 99 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch
Confidence 4445667788999999999998651 11222 24555667889999999999999999999999
Q ss_pred CchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 377 KIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 377 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
+..+|..++.+|...|++++|...++...+
T Consensus 100 ~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 100 NVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998765
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.68 E-value=0.00013 Score=60.22 Aligned_cols=80 Identities=9% Similarity=-0.044 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 389 (548)
...|..+..+|.+.|++++|+..+++.- +.|+ +..|..+..++...|+++.|...++++++++|++..++..+..++.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3457778888999999999999988773 5565 7788888899999999999999999999999999887777776655
Q ss_pred Hc
Q 038673 390 SA 391 (548)
Q Consensus 390 ~~ 391 (548)
+.
T Consensus 157 ~l 158 (169)
T d1ihga1 157 KI 158 (169)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.66 E-value=0.00072 Score=54.53 Aligned_cols=121 Identities=10% Similarity=-0.050 Sum_probs=87.5
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHH
Q 038673 255 SYSSMILGFAMHGRAHAAIQLFGDMVKTET----KPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEE 330 (548)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 330 (548)
.+......+.+.|++.+|+..|.+.+..-. .++........ .....+|+.+..+|.+.|++++
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~Nla~~~~~l~~~~~ 85 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK-------------NIEISCNLNLATCYNKNKDYPK 85 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH-------------HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhh-------------hHHHHHHhhHHHHHHHhcccch
Confidence 344455667778888888888888775311 11111110000 0122457778899999999999
Q ss_pred HHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 038673 331 ALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIY 388 (548)
Q Consensus 331 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 388 (548)
|++.+++.- +.| +..+|..+..++...|+++.|...|+++++++|+++.+...+..+.
T Consensus 86 Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 86 AIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred hhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999998863 456 4789999999999999999999999999999999987766665443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.60 E-value=0.00013 Score=60.22 Aligned_cols=93 Identities=10% Similarity=-0.021 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-----------------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP-----------------VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~-----------------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 376 (548)
+......+.+.|++++|++.|++.- +.|. ...|..+-.++.+.|+++.|+..++++++++|+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 109 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 109 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence 4445667788999999988887651 2232 445666778889999999999999999999999
Q ss_pred CchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 377 KIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 377 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
++.+|..++.+|...|++++|.+.++...+.
T Consensus 110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 110 NTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988763
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=4e-05 Score=75.81 Aligned_cols=110 Identities=12% Similarity=-0.051 Sum_probs=46.8
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCCh-hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNV-FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACS 299 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 299 (548)
+...+..+...+.+.|+.+.|...+....+++. .++..+...+...|++++|+..|++..+ +.|+
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~------------ 184 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPS------------ 184 (497)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT------------
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCC------------
Confidence 555566666666666666666655554433222 2444455556666666666666666665 3344
Q ss_pred hcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHHH
Q 038673 300 HVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-V-EPNGGVWGALLGACQ 355 (548)
Q Consensus 300 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~ 355 (548)
+...|+.|...+...|+..+|...|.+.- + .|-..++..|...+.
T Consensus 185 -----------~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 185 -----------NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp -----------BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred -----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 23456666666666666666666665442 2 344555555555443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=1.1e-05 Score=79.83 Aligned_cols=75 Identities=8% Similarity=-0.022 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 389 (548)
+..+.+++...|++++|...|++.. +.|+ ...|+.|...+...|+..+|...|.+.+...|+.+.++..|...+.
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 3444444555555555555554442 3333 3445555555555555555555555555555555545555544443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.37 E-value=0.0012 Score=54.16 Aligned_cols=94 Identities=7% Similarity=-0.091 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC----C--CCC-----------hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038673 314 HYACMVDLLGRAGCLEEALKMVEKMP----V--EPN-----------GGVWGALLGACQIHRNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 314 ~~~~li~~~~~~g~~~~A~~~~~~m~----~--~p~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 376 (548)
.+.-....+.+.|++++|...|++.- . .++ ..+|..+-.++...|+++.|...++.+++++|+
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~ 96 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 96 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccc
Confidence 35556778889999999999987651 1 111 122444556788999999999999999999999
Q ss_pred CchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 377 KIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 377 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
+..+|..++.+|...|++++|...++...+.
T Consensus 97 ~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 97 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998753
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.00063 Score=52.97 Aligned_cols=85 Identities=11% Similarity=0.056 Sum_probs=41.3
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCh-------hhhHHHHHHH
Q 038673 194 ACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNV-------FSYSSMILGF 263 (548)
Q Consensus 194 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~-------~~~~~li~~~ 263 (548)
.+...|++++|...|..+++.++. +..++..+..+|.+.|++++|...++++.+ .+. .+|..+...+
T Consensus 13 ~~~~~~~y~~Ai~~y~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~ 89 (128)
T d1elra_ 13 DAYKKKDFDTALKHYDKAKELDPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443322 444444444444444444444444444332 111 2344455555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 038673 264 AMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 264 ~~~g~~~~A~~l~~~m~~ 281 (548)
...+++++|++.|++...
T Consensus 90 ~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 90 FKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 666677777777766655
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.32 E-value=0.00033 Score=56.03 Aligned_cols=115 Identities=16% Similarity=0.102 Sum_probs=81.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHH----------cCCHHHHH
Q 038673 263 FAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGR----------AGCLEEAL 332 (548)
Q Consensus 263 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~----------~g~~~~A~ 332 (548)
|-+.+.+++|+..|+...+ +.|+.. ..+..+..+|.. .+.+++|+
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~-----------------------~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai 61 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDA-----------------------DNLTRWGGVLLELSQFHSISDAKQMIQEAI 61 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCH-----------------------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcch-----------------------HHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 3455678999999999988 556643 345555555543 35567888
Q ss_pred HHHHhCC-CCCC-hhHHHHHHHHHHhcC-----------CHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 038673 333 KMVEKMP-VEPN-GGVWGALLGACQIHR-----------NPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSR 399 (548)
Q Consensus 333 ~~~~~m~-~~p~-~~~~~~ll~~~~~~~-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 399 (548)
..|++.. +.|+ ..+|..+..++...| +++.|.+.|+++++++|++...+..|... ..|.+
T Consensus 62 ~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~ 134 (145)
T d1zu2a1 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQ 134 (145)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHH
T ss_pred HHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHH
Confidence 8888774 5665 778888777776554 36889999999999999998666555543 35667
Q ss_pred HHHHHHhCCC
Q 038673 400 VRRLLKMTGL 409 (548)
Q Consensus 400 ~~~~m~~~g~ 409 (548)
++.+..++|+
T Consensus 135 ~~~e~~k~~~ 144 (145)
T d1zu2a1 135 LHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHHhc
Confidence 7777766664
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.12 E-value=0.0019 Score=53.36 Aligned_cols=122 Identities=9% Similarity=0.063 Sum_probs=84.3
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMY 232 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y 232 (548)
...........|++++|...|.+....- +... +......+-+...-..+.. .....+..+...+
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~------~~~~a~~~la~~~ 77 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVE------DKVLAHTAKAEAE 77 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 3444567788999999999999887631 1110 0000111111111111111 2556788899999
Q ss_pred hcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHhh
Q 038673 233 SKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVK-----TETKPNGVT 290 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t 290 (548)
.+.|++++|...++++.+ .+...|..++.+|...|+..+|++.|+++.. .|+.|...|
T Consensus 78 ~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 78 IACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 999999999999998874 4678899999999999999999999999744 577777654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.11 E-value=0.0012 Score=53.35 Aligned_cols=94 Identities=14% Similarity=0.005 Sum_probs=72.9
Q ss_pred HHHHHH--HHHHHHcCCHHHHHHHHHhCC----CCCC----------hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038673 313 DHYACM--VDLLGRAGCLEEALKMVEKMP----VEPN----------GGVWGALLGACQIHRNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 313 ~~~~~l--i~~~~~~g~~~~A~~~~~~m~----~~p~----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 376 (548)
.+|..+ ...+.+.|++++|++.|++.- ..|+ ...|+.+-.++...|+++.|...+++.+++.|.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 456666 556678899999999998762 1222 356777888999999999999999998875332
Q ss_pred -------C----chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 377 -------K----IGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 377 -------~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
. ..++..++.+|...|++++|.+.+++..+
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22577889999999999999999998765
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.0025 Score=46.31 Aligned_cols=75 Identities=13% Similarity=0.013 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC--------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHH
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMP--------VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYI 382 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 382 (548)
...+-.+...+.+.|++++|...|++.. ..++ ..++..|..++.+.|++++|...++++++++|+++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 3445567788899999999999887661 1233 567888889999999999999999999999999988777
Q ss_pred HHHH
Q 038673 383 ILSN 386 (548)
Q Consensus 383 ~l~~ 386 (548)
.+..
T Consensus 85 Nl~~ 88 (95)
T d1tjca_ 85 NLKY 88 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.89 E-value=0.00084 Score=59.52 Aligned_cols=28 Identities=18% Similarity=0.043 Sum_probs=18.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 352 GACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
..+...|+.+.|...++++.+..|..+.
T Consensus 107 ~~~~~~gd~~~A~~~~~~a~e~~p~~~~ 134 (264)
T d1zbpa1 107 NLSMVSQDYEQVSELALQIEELRQEKGF 134 (264)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence 4566667777777777777776666553
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.88 E-value=0.00035 Score=55.90 Aligned_cols=85 Identities=14% Similarity=0.064 Sum_probs=66.6
Q ss_pred HHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHh----------cCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 038673 322 LGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQI----------HRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389 (548)
Q Consensus 322 ~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~----------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 389 (548)
|-+.+.+++|.+.|++.- ..|+ +.++..+-.++.. .+.+++|+..++++++++|+++.+|..++.+|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 456778999999999874 5565 5566666655543 345688999999999999999999999999998
Q ss_pred HcCC-----------chHHHHHHHHHHh
Q 038673 390 SAGM-----------WDDVSRVRRLLKM 406 (548)
Q Consensus 390 ~~g~-----------~~~a~~~~~~m~~ 406 (548)
..|+ +++|.+.|++..+
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 8764 5778888877764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.85 E-value=0.16 Score=45.91 Aligned_cols=43 Identities=5% Similarity=0.050 Sum_probs=21.0
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 038673 355 QIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSR 399 (548)
Q Consensus 355 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 399 (548)
.+.+++......++...+. ++......|..+|...++++.-.+
T Consensus 259 ~k~~~l~li~p~Le~v~~~--n~~~vn~al~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 259 SKVKQLPLVKPYLRSVQNH--NNKSVNESLNNLFITEEDYQALRT 301 (336)
T ss_dssp HHTTCTTTTHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHc--ChHHHHHHHHHHHhCcchhHHHHH
Confidence 3344444444444443331 223466666666666666544333
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.79 E-value=0.0015 Score=57.82 Aligned_cols=119 Identities=10% Similarity=-0.117 Sum_probs=87.3
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHH
Q 038673 160 YVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSID 239 (548)
Q Consensus 160 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~ 239 (548)
..+.|++++|+..+++.++.. +-|...+..+...++..|++++|.+.++...+..+. +...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~---~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE---YLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG---GHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHhccccH
Confidence 456799999999999998874 557788899999999999999999999999887754 6777777777666555554
Q ss_pred HHHHHHhcCC-CCCh---hhhHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 240 DAYRIFVGMK-QRNV---FSYSSMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 240 ~A~~~~~~~~-~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
++..-..... ..+. ..+......+...|+.++|.++++++.+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 4433222211 1122 33344456678889999999999999884
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.29 E-value=0.026 Score=44.96 Aligned_cols=92 Identities=8% Similarity=-0.083 Sum_probs=55.0
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCCC----------hhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhC
Q 038673 63 TEVLDVSLGQQIHAQTILLGGFTSD----------LYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANN 132 (548)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 132 (548)
...|++++|.+.|++.++..+-.|+ ...|+.+..+|.+.|++++|...+
T Consensus 20 ~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~--------------------- 78 (156)
T d2hr2a1 20 LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSA--------------------- 78 (156)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHH---------------------
T ss_pred HHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhh---------------------
Confidence 3445555555555555543211111 245667777778888888777663
Q ss_pred CChHHHHHHHccCCCC-------ChhHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 038673 133 GDMESAGGLFNELPLK-------DKVAWTAMVTGYVQNAKPREAIEYFERMQY 178 (548)
Q Consensus 133 g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 178 (548)
++|+.++.+.... ....|+.+..+|...|++++|+..|++..+
T Consensus 79 ---~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 79 ---DKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp ---HHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---hhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333443332221 123567778888889999999888887653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.59 E-value=0.28 Score=36.31 Aligned_cols=135 Identities=9% Similarity=0.046 Sum_probs=87.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHH------HHcCCHHHHHHHHH
Q 038673 263 FAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLL------GRAGCLEEALKMVE 336 (548)
Q Consensus 263 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~------~~~g~~~~A~~~~~ 336 (548)
+...|..++..++..+.... .+..-|+.++.-....- |-.+.-..++.- ..++++......+-
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~--------dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~ 80 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESI--------DCRYMFQVLDKIGSYFDLDKCQNLKSVVECGV 80 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHC--------CHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeeccccc--------chHHHHHHHHHHhhhcCchhhhcHHHHHHHHH
Confidence 45678899999999888764 12222222222111100 000001111111 23344444444444
Q ss_pred hCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 038673 337 KMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 337 ~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 410 (548)
.+. .+...+...++...++|.-+.-.++++.+++.+..+|.....++++|-+.|...++.+++.+.-++|++
T Consensus 81 ~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 81 INN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred Hhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 443 455666777889999999999999999988877667889999999999999999999999999999985
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.061 Score=38.49 Aligned_cols=74 Identities=12% Similarity=-0.106 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHC-----CCCCC-HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYA-----GVETD-YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVG 225 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 225 (548)
.+-.+...+.+.|++++|+..|++..+. ...++ ..++..+..++.+.|++++|...++++++..+. +..++
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~---~~~a~ 83 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE---HQRAN 83 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC---CHHHH
Confidence 3446677788888888888888776542 11222 346777788888888888888888888877644 56555
Q ss_pred HHH
Q 038673 226 SAL 228 (548)
Q Consensus 226 ~~l 228 (548)
+.+
T Consensus 84 ~Nl 86 (95)
T d1tjca_ 84 GNL 86 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.84 E-value=0.85 Score=33.66 Aligned_cols=137 Identities=14% Similarity=-0.042 Sum_probs=82.1
Q ss_pred hhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC-CCee---hHHHHHHHHHhCCChHH
Q 038673 62 CTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE-RDVV---SWTELIVAYANNGDMES 137 (548)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~---~~~~li~~~~~~g~~~~ 137 (548)
+...|.++++.++.....+.. +..-||-.|.-....-+-+...++++.+-. -|.. -...++.+|...+.
T Consensus 12 ~ildG~ve~Gveii~k~~~ss----~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNT--- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTC---
T ss_pred HHHhhhHHhHHHHHHHHcccC----CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcc---
Confidence 344566777777777666654 233333333333333344444444444322 1110 11223334433332
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 038673 138 AGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFG 217 (548)
Q Consensus 138 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 217 (548)
+....+.-++...++|+-+.-.++++.+.+.+ +|+......+..||.+.|+..++.+++.++-+.|..
T Consensus 85 -----------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 -----------LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp -----------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 33445556677888888888888888876644 777788888889999999999999999998888865
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.07 E-value=0.64 Score=35.11 Aligned_cols=110 Identities=9% Similarity=-0.030 Sum_probs=69.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc----CCCHHH
Q 038673 165 KPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK----CGSIDD 240 (548)
Q Consensus 165 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~----~g~~~~ 240 (548)
++++|+.+|++..+.|-. .....+. .....+.++|.+.++...+.| ++.....|..+|.. ..+.++
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g-----~~~a~~~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc-----chhhhhhHHHhhhhccccchhhHH
Confidence 566777777777766622 1222222 223456778888888777765 44455556666654 456788
Q ss_pred HHHHHhcCCC-CChhhhHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 038673 241 AYRIFVGMKQ-RNVFSYSSMILGFAM----HGRAHAAIQLFGDMVKTET 284 (548)
Q Consensus 241 A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 284 (548)
|.+.|++..+ .++.....|-..|.. ..+..+|+++|++..+.|.
T Consensus 78 A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 78 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 8888877654 455555556555554 4578888888888877653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.43 E-value=5.5 Score=36.92 Aligned_cols=227 Identities=12% Similarity=0.076 Sum_probs=102.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhcc--CCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc
Q 038673 24 IRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV--LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKC 101 (548)
Q Consensus 24 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 101 (548)
+....+.|+..++.++...+... | ...|...-..-... ....+ +...+.+..+.+.........+..+.+.
T Consensus 13 a~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~---i~~Fl~~~p~~P~~~~lr~~~l~~L~~~ 85 (450)
T d1qsaa1 13 IKQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVT---VTNFVRANPTLPPARTLQSRFVNELARR 85 (450)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHH---HHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHH---HHHHHHHCCCChhHHHHHHHHHHHHHhc
Confidence 34456777888877777766432 3 23333332222222 23333 3333333221111222334445566677
Q ss_pred CChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC
Q 038673 102 GFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGV 181 (548)
Q Consensus 102 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 181 (548)
++.......+..-+ .+...-.....+....|+.++|...+..+-.. ..-..+....+|..+...|
T Consensus 86 ~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~-------------~~~~p~~c~~l~~~~~~~~- 150 (450)
T d1qsaa1 86 EDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT-------------GKSQPNACDKLFSVWRASG- 150 (450)
T ss_dssp TCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC-------------SSCCCTHHHHHHHHHHHTT-
T ss_pred cCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------------CCCCchHHHHHHHHHHhcC-
Confidence 77776665554322 12333334555666667766665554332100 0112333344445444443
Q ss_pred CCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHH
Q 038673 182 ETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMIL 261 (548)
Q Consensus 182 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 261 (548)
.++...+-.-+......|+...+..+...+ .+ .........+..+.+-..+...... . ..+......+..
T Consensus 151 ~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l-----~~-~~~~~~~a~~~l~~~p~~~~~~~~~---~-~~~~~~~~~~~~ 220 (450)
T d1qsaa1 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQM-----PA-DYQTIASAIISLANNPNTVLTFART---T-GATDFTRQMAAV 220 (450)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTC-----CG-GGHHHHHHHHHHHHCGGGHHHHHHH---S-CCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCChhhHHHHHhhC-----Ch-hHHHHHHHHHHHHhChHhHHHHHhc---C-CCChhhhHHHHH
Confidence 223333333334444556666666655432 11 2444555566555544443332221 1 122222222233
Q ss_pred HHHh--cCCHHHHHHHHHHHHHc
Q 038673 262 GFAM--HGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 262 ~~~~--~g~~~~A~~l~~~m~~~ 282 (548)
++.+ ..+.+.|..++......
T Consensus 221 ~l~rla~~d~~~a~~~l~~~~~~ 243 (450)
T d1qsaa1 221 AFASVARQDAENARLMIPSLAQA 243 (450)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHhccChhHHHHHHHhhhhc
Confidence 3322 24677788777776654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=90.03 E-value=1.7 Score=32.47 Aligned_cols=113 Identities=10% Similarity=-0.034 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhH
Q 038673 267 GRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGV 346 (548)
Q Consensus 267 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~ 346 (548)
.++++|+++|++..+.|-..- ...| +.....+.++|.+++++.-..-++..
T Consensus 7 kd~~~A~~~~~kaa~~g~~~a---------------------------~~~l--~~~~~~~~~~a~~~~~~aa~~g~~~a 57 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEMFG---------------------------CLSL--VSNSQINKQKLFQYLSKACELNSGNG 57 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCTTH---------------------------HHHH--HTCTTSCHHHHHHHHHHHHHTTCHHH
T ss_pred cCHHHHHHHHHHHHHCCChhh---------------------------hhhh--ccccccCHHHHHHHHhhhhcccchhh
Confidence 367889999999887653211 1111 11234567888888877632234444
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHH----cCCchHHHHHHHHHHhCCCc
Q 038673 347 WGALLGACQI----HRNPEIAQIAANHLFELEPDKIGNYIILSNIYAS----AGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 347 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 410 (548)
...|-..+.. ..+.+.|.+.+++..+.. ++.....|+.+|.. ..+.++|.+++++..+.|..
T Consensus 58 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 58 CRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred hhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 4444444433 467899999999988753 45578888888887 45789999999999888763
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.91 E-value=0.68 Score=34.34 Aligned_cols=64 Identities=6% Similarity=-0.103 Sum_probs=39.9
Q ss_pred ChhHHHHHHHHHHhc---CCHHHHHHHHHHHhhcCCCCc-hhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 343 NGGVWGALLGACQIH---RNPEIAQIAANHLFELEPDKI-GNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 343 ~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
...|--....++.++ .+.+.|+.+++.+.+.+|.+. ..+..|+.+|.+.|++++|.+.++.+.+
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 333333333444433 344677777777777776553 4566777777777777777777777754
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.24 E-value=1.1 Score=31.28 Aligned_cols=63 Identities=11% Similarity=0.019 Sum_probs=50.0
Q ss_pred CchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 038673 32 HLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIG 96 (548)
Q Consensus 32 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 96 (548)
+.-++.+-++.+....+.|++....+.++||.+.+|+..|.++++-+.... .++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~--~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcHHHHHHHHH
Confidence 344666777777778889999999999999999999999999999887653 445667766654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=87.83 E-value=10 Score=34.90 Aligned_cols=245 Identities=10% Similarity=-0.017 Sum_probs=129.2
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCC----------------CCC
Q 038673 24 IRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGF----------------TSD 87 (548)
Q Consensus 24 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~----------------~~~ 87 (548)
+..+.+.++++..+..+. ..+++...-...+.+....|+...+......+-..|.. ..+
T Consensus 79 l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt 153 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQD 153 (450)
T ss_dssp HHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCC
Confidence 445556666555443321 11223333334455555566665555555555444411 222
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHH--CCC
Q 038673 88 LYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQ--NAK 165 (548)
Q Consensus 88 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~ 165 (548)
...+-.-+......|+...|..+...++..........+........+ ........ .+......+..++.+ ..+
T Consensus 154 ~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~---~~~~~~~~-~~~~~~~~~~~~l~rla~~d 229 (450)
T d1qsaa1 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTTG-ATDFTRQMAAVAFASVARQD 229 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHSC-CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhH---HHHHhcCC-CChhhhHHHHHHHHHHhccC
Confidence 222333344445556666677776666554444444555444332222 22222222 223322233333332 257
Q ss_pred hhHHHHHHHHHHHCC-CCCCHhh-HH-HHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHH
Q 038673 166 PREAIEYFERMQYAG-VETDYVT-LV-GVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY 242 (548)
Q Consensus 166 ~~~A~~l~~~m~~~g-~~p~~~t-~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~ 242 (548)
.+.|..++....... ..++... .. .+.......+..+.+...+......+. +.....-.+....+.+++..+.
T Consensus 230 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~w~~~~al~~~~~~~~~ 305 (450)
T d1qsaa1 230 AENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ----STSLIERRVRMALGTGDRRGLN 305 (450)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC----CHHHHHHHHHHHHHHTCHHHHH
T ss_pred hhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc----chHHHHHHHHHHHHcCChHHHH
Confidence 788888888776543 2222211 11 112222344666778777777666553 3334444555667789999999
Q ss_pred HHHhcCCCCCh--hhh-HHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 243 RIFVGMKQRNV--FSY-SSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 243 ~~~~~~~~~~~--~~~-~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
..|..|..... .-| -=+..++...|+.++|...|.....
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 99999974211 112 2245678899999999999998864
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.00 E-value=2.2 Score=31.45 Aligned_cols=64 Identities=14% Similarity=0.011 Sum_probs=46.6
Q ss_pred HHHHHHHHc---CCHHHHHHHHHhCC-CCCC-h-hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchh
Q 038673 317 CMVDLLGRA---GCLEEALKMVEKMP-VEPN-G-GVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGN 380 (548)
Q Consensus 317 ~li~~~~~~---g~~~~A~~~~~~m~-~~p~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 380 (548)
...-++.+. .+.++++.++++.- ..|. . ..|-.|--+|.+.|+++.|.+.++.+++.+|++..+
T Consensus 40 ~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 40 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 334445444 45678888888763 2343 2 455566678999999999999999999999998743
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.23 E-value=4.3 Score=28.20 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=38.6
Q ss_pred CCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 338 MPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 338 m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
+-+-|++.+..+-+.||++.+++..|.++++.+...--.+...|..++
T Consensus 35 ~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 35 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 346799999999999999999999999999998874433344666554
|