Citrus Sinensis ID: 038749

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930----
MASTSKVDSSVDDEAEEEEFERFDDFTLASSWERFISEIEAICRQWLADGSKNLLEKGAIQLDSSKNLYKAKSELKYFMKSYCMEYYFEIKKSGEFTVWDCTLHDLQLCFGVKEFLVIAPQSASGVVLDAPEASKLLSAVAIALSNCSSLWPAFVPVHDPSRNAFIGIQNMGTIFTRRFEADRICSQVPVKLMHLEGLYELFVSKFAYSTLDFSMHVFKVRFTMKLTYKTLPYDDDDDMRGEDVENTEPTDFPGGESGTRTQWDDDCPWSEWYSAEDLVKGFGLVVIWSEKTVEGSFEMAEIENSSPHEAEKWILFPNICFFSLMHLKMSFEAQFMEDFVSVENPGSDNLKSSMVIPSPTIIDRVLKDLFHEGVQLPDFAKGQHRSSRSIKGARLESLFAQFCLHSLWFGNCNIRAIAVLWIEFVREIRWYWEESQPLPKMPVNGSIDLSTCLINQKLQMLAICIEKMRELNEEFQDCIGSNDPSPADIKEDGQAVDGSNNLRIPDENFDRNCDSQLTADGLRESGNAIQRYTMKPQDVASIDKKPSDFVRRGSAGKVGSMMLLKSYQSMHAPFTQDAPLMTEDMHEERLHAVEAFSNSFEFSAQLERDILLSDMSAFKAANPDAVFEDFIRWHSPGDWLNDDGKENGPSGIPAVEDLKENWPPQGRLSQRMSEHGNLWRKIWNEAPAVSASEQKPLLDPNREGEKILHYLETLRPNDLLEQMVCTAFRASADTLNQTHFGALKQMAMKMDQLYITMSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVAASLHRKFLQAPRISEAIFSDFYDFYLPKMGRGSGQEDVQMEFDMKLQLRNHERQLVSNMFMPPTANQSWRKVLSMGNLLNGHEPILREIIFSSSDHVNGGHYAPSTPRAYQQEIETYRMYICGTSNDLRVALSVTSCD
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEcccccccHHHHHHHHHcccccccccccccHHHHcccccEEEEcccccccccccHHHHHHHHHHHHHHHHHccccccEEEEcccccccEEEEEEccccEEEEEEEEEEcccccccccccHHHHHHHHHHHHcccccccccEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccEEEcccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccccccccccccccEEEEEEEccccccccccccccccccccccccEEEEEEccccEEEEEEEEccc
cccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHcccccccccccccEEEccccEEEEEEEEEEEcccEEEEEEEEEEccccccccccccHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEcccccEEEEEEEcccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEEEEcccccccccccccccEcccccccccccccccccccccccccccccccccccccEEEEEEEcccccccEEEccccccccccccccccEEEEccccHHHHHHcHHHHHHHHHHHcccccccccccccccccccHHHHHHHcHHHcccccccccccccHccccHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHccccccccccccccccHHcccccccHHHccccccccccccccccccccHcccccccccccccccccccccccEEccccccEEcccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccHHHHEEEccccccccccccccccccccccccccccccccccccHHccccccHHHHHHHHcccccHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccHcccccccHHccHHHHHHHHcccccccccccHHHHHcccHHcccccHHHHEEEEEcccccccccccccccccccccEEEEEEEEEEcccccEEEEEEEccc
mastskvdssvddeaeeeeferfddftlaSSWERFISEIEAICRQWLADGSKNLLEKGAIQLDSSKNLYKAKSELKYFMKSYCMEYYFEIKksgeftvwdctlhdlqlcfgVKEFLviapqsasgvvldapEASKLLSAVAIALSncsslwpafvpvhdpsrnafigiqnmgtiftrrfeadricsqvpVKLMHLEGLYELFVSKFAYSTLDFSMHVFKVRFTMKltyktlpydddddmrgedventeptdfpggesgtrtqwdddcpwsewysaedlVKGFGLVVIWSektvegsfemaeiensspheaekwilfpnicffSLMHLKMSFEAQFMEDFVsvenpgsdnlkssmvipsptiIDRVLKDLFhegvqlpdfakgqhrssrsikGARLESLFAQFCLHSLWFGNCNIRAIAVLWIEFVREIRWYWeesqplpkmpvngsidlsTCLINQKLQMLAICIEKMRELNEEFqdcigsndpspadikedgqavdgsnnlripdenfdrncdsqltADGLRESGNAIQrytmkpqdvasidkkpsdfvrrgsagkvGSMMLLKSYqsmhapftqdaplmteDMHEERLHAVEAFSNSFEFSAQLERDILLSDmsafkaanpdavfedfirwhspgdwlnddgkengpsgipavedlkenwppqgrlsqRMSEHGNLWRKIWneapavsaseqkplldpnregEKILHYLETLRPNDLLEQMVCTAFRASADTLNQTHFGALKQMAMKMDQLYITMSSVlkplqannlsgdsetIEDLRRLCVVFEHVEKLLTVAASLHRKflqapriseaifsdfydfylpkmgrgsgqedVQMEFDMKLQLRNHERQlvsnmfmpptanQSWRKVLSMgnllnghepiLREIIFsssdhvngghyapstpraYQQEIETYRMYICGTSNDLRVALSVTSCD
mastskvdssvddeaeeeeferfddftlaSSWERFISEIEAICRQWLADGSKNLLEKGaiqldssknlYKAKSELKYFMKSYCMEYYFEIKKSGEFTVWDCTLHDLQLCFGVKEFLVIAPQSASGVVLDAPEASKLLSAVAIALSNCSSLWPAFVPVHDPSRNAFIGIQNMGTIFTRRFEADRICSQVPVKLMHLEGLYELFVSKFAYSTLDFSMHVFKVRFTMKLTYKTLPYDDDDDMRGEDVEnteptdfpggesgtrtqWDDDCPWSEWYSAEDLVKGFGLVVIWSEKTVEGSFEMAEIENSSPHEAEKWILFPNICFFSLMHLKMSFEAQFMEDFVSVENPGSDNLKSSMVIPSPTIIDRVLKDLFHEGVQlpdfakgqhrssRSIKGARLESLFAQFCLHSLWFGNCNIRAIAVLWIEFVREIRWYWEESQPLPKMPVNGSIDLSTCLINQKLQMLAICIEKMRELNEEFQDCIGSNDPSPADIKEDGQAVDGSNNLRIPDENFDRNCDSQLTADGLRESGNAIQrytmkpqdvasidkkpsdfvrrgsAGKVGSMMLLKSYQSMHAPFTQDAPLMTEDMHEERLHAVEAFSNSFEFSAQLERDILLSDMSAFKAANPDAVFEDFIRWHSPGDWLNDDGKENGPSGIPAVEDLKENWPPQGRLSQRMSEHGNLWRKIWNEApavsaseqkplldpnrEGEKILHYLETLRPNDLLEQMVCTAFRASADTLNQTHFGALKQMAMKMDQLYITMSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVAASLHRKFLQAPRISEAIFSDFYDFYLPKMGRGSGQEDVQMEFDMKLQLRNHERQLVSNMFMPPTANQSWRKVLSMGNLLNGHEPILREIIFSSSDHVNGGHYAPSTPRAYQQEIETYRMYICGTSNDLRVALSVTSCD
MASTSKVDSSVddeaeeeeferfddfTLASSWERFISEIEAICRQWLADGSKNLLEKGAIQLDSSKNLYKAKSELKYFMKSYCMEYYFEIKKSGEFTVWDCTLHDLQLCFGVKEFLVIAPQSASGVVLDAPEASKLLSAVAIALSNCSSLWPAFVPVHDPSRNAFIGIQNMGTIFTRRFEADRICSQVPVKLMHLEGLYELFVSKFAYSTLDFSMHVFKVRFTMKLTYKTLPYdddddMRGEDVENTEPTDFPGGESGTRTQWDDDCPWSEWYSAEDLVKGFGLVVIWSEKTVEGSFEMAEIENSSPHEAEKWILFPNICFFSLMHLKMSFEAQFMEDFVSVENPGSDNLKSSMVIPSPTIIDRVLKDLFHEGVQLPDFAKGQHRSSRSIKGARLESLFAQFCLHSLWFGNCNIRAIAVLWIEFVREIRWYWEESQPLPKMPVNGSIDLSTCLINQKLQMLAICIEKMRELNEEFQDCIGSNDPSPADIKEDGQAVDGSNNLRIPDENFDRNCDSQLTADGLRESGNAIQRYTMKPQDVASIDKKPSDFVRRGSAGKVGSMMLLKSYQSMHAPFTQDAPLMTEDMHEERLHAVEAFSNSFEFSAQLERDILLSDMSAFKAANPDAVFEDFIRWHSPGDWLNDDGKENGPSGIPAVEDLKENWPPQGRLSQRMSEHGNLWRKIWNEAPAVSASEQKPLLDPNREGEKILHYLETLRPNDLLEQMVCTAFRASADTLNQTHFGALKQMAMKMDQLYITMSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVAASLHRKFLQAPRISEAIFSDFYDFYLPKMGRGSGQEDVQMEFDMKLQLRNHERQLVSNMFMPPTANQSWRKVLSMGNLLNGHEPILREIIFSSSDHVNGGHYAPSTPRAYQQEIETYRMYICGTSNDLRVALSVTSCD
*********************RFDDFTLASSWERFISEIEAICRQWLADGSKNLLEKGAIQLDSSKNLYKAKSELKYFMKSYCMEYYFEIKKSGEFTVWDCTLHDLQLCFGVKEFLVIAPQSASGVVLDAPEASKLLSAVAIALSNCSSLWPAFVPVHDPSRNAFIGIQNMGTIFTRRFEADRICSQVPVKLMHLEGLYELFVSKFAYSTLDFSMHVFKVRFTMKLTYKTLPY****************************QWDDDCPWSEWYSAEDLVKGFGLVVIWSEKTVEGSFEM**********AEKWILFPNICFFSLMHLKMSFEAQFMEDFVSV***********MVIPSPTIIDRVLKDLFHEGVQLPDFA**********KGARLESLFAQFCLHSLWFGNCNIRAIAVLWIEFVREIRWYWEESQPLPKMPVNGSIDLSTCLINQKLQMLAICIEKMRELNEEFQDC*****************************************************************************************************************AVEAFSNSFEFSAQLERDILLSDMSAFKAANPDAVFEDFIRWHSPGDWL************************************NLWRKIWN*********************KILHYLETLRPNDLLEQMVCTAFRASADTLNQTHFGALKQMAMKMDQLYITMSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVAASLHRKFLQAPRISEAIFSDFYDFYL***************************************NQSWRKVLSMGNLLNGHEPILREIIFSSSDHVNGGHYAPSTPRAYQQEIETYRMYICGTSNDLRVALS*****
*******************FERFDDFTLASSWERFISEIEAICRQWLADG*********IQLDSSKNLYKAKSELKYFMKSYCMEYY****************HDLQLCFGVKEFLVIAPQSA*******PEASKLLSAVAIALSNCSSLWPAFVPVHDPSRNAFIGIQNMGTIFTRRFEADRICSQVPVKLMHLEGLYELFVSKFAYSTLDFSMHVFKVRFTMKLTYKTLPYDDDDDMRGEDVENTEPTDFPGGESGTRTQWDDDCPWSEWYSAEDLVKGFGLVVIWSEKTVEGSFEMAEIENSSPHEAEKWILFPNICFFSLMHLKMSFEAQFM*************************IDRVLKDLFHE*******************GARLESLFAQFCLHSLWFGNCNIRAIAVLWIEFVREIRWYWEESQPLPKMPVNGSIDLSTCLINQKLQMLAICIE***********************************************************************************************MLLKSYQSMHAPFTQDAPLMTEDMHEERLHA****************DILLSDMSAFKAANPDAVFEDFIRWHSPGDWL*******************************MSEHGNLWRKIWNEAPAVSASEQKPLLDPNREGEKILHYLETLRPNDLLEQMVCTAFRASADTLNQTHFGALKQMAMKMDQLYITMSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVAASLHRKFLQAPRISEAIFSDFYD********************MKLQL************************************ILREIIFSSSDH**********************MYICGTSNDLRVALSVT***
********************ERFDDFTLASSWERFISEIEAICRQWLADGSKNLLEKGAIQLDSSKNLYKAKSELKYFMKSYCMEYYFEIKKSGEFTVWDCTLHDLQLCFGVKEFLVIAPQSASGVVLDAPEASKLLSAVAIALSNCSSLWPAFVPVHDPSRNAFIGIQNMGTIFTRRFEADRICSQVPVKLMHLEGLYELFVSKFAYSTLDFSMHVFKVRFTMKLTYKTLPYDDDDDMRGEDVENTEPTDFPGGESGTRTQWDDDCPWSEWYSAEDLVKGFGLVVIWSEKTVEGSFE*********HEAEKWILFPNICFFSLMHLKMSFEAQFMEDFVSVENPGSDNLKSSMVIPSPTIIDRVLKDLFHEGVQLPDF**********IKGARLESLFAQFCLHSLWFGNCNIRAIAVLWIEFVREIRWYWEESQPLPKMPVNGSIDLSTCLINQKLQMLAICIEKMRELNEEFQDCIGSNDPSPADIKEDGQAVDGSNNLRIPDENFDRNCDSQLTADGLRESGNAIQRYTMKPQDVASIDKKPSDFVRRGSAGKVGSMMLLKSYQSMHAPFTQDAPLMTEDMHEERLHAVEAFSNSFEFSAQLERDILLSDMSAFKAANPDAVFEDFIRWHSPGDWLNDDGKENGPSGIPAVEDLKENWPPQGRLSQRMSEHGNLWRKIWNEAPAVSASEQKPLLDPNREGEKILHYLETLRPNDLLEQMVCTAFRASADTLNQTHFGALKQMAMKMDQLYITMSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVAASLHRKFLQAPRISEAIFSDFYDFYLPKMGRGSGQEDVQMEFDMKLQLRNHERQLVSNMFMPPTANQSWRKVLSMGNLLNGHEPILREIIFSSSDHVNGGHYAPSTPRAYQQEIETYRMYICGTSNDLRVALSVTSCD
*****************EEFERFDDFTLASSWERFISEIEAICRQWLADGSKNLLEKGAIQLDSSKNLYKAKSELKYFMKSYCMEYYFEIKKSGEFTVWDCTLHDLQLCFGVKEFLVIAPQSASGVVLDAPEASKLLSAVAIALSNCSSLWPAFVPVHDPSRNAFIGIQNMGTIFTRRFEADRICSQVPVKLMHLEGLYELFVSKFAYSTLDFSMHVFKVRFTMKLTYKTLPYDDDDDMRGEDVEN**********SGTRTQWDDDCPWSEWYSAEDLVKGFGLVVIWSEKTVEGSFEMAEIENSSPHEAEKWILFPNICFFSLMHLKMSFEAQFMEDFVSVENPGSDNLKSSMVIPSPTIIDRVLKDLFHEGVQLPDFAKGQHRSSRSIKGARLESLFAQFCLHSLWFGNCNIRAIAVLWIEFVREIRWYWEESQPLPKMPVNGSIDLSTCLINQKLQMLAICIEKMRELN**********************************************************************************AGKVGSMMLLKSYQSMHAPFTQDAPLMTEDMHEERLHAVEAFSNSFEFSAQLERDILLSDMSAFKAANPDAVFEDFIRWHSPGDWL********************************SEHGNLWRKIWNEAPAVSASEQKPLLDPNREGEKILHYLETLRPNDLLEQMVCTAFRASADTLNQTHFGALKQMAMKMDQLYITMSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVAASLHRKFLQAPRISEAIFSDFYDFYLPKMGRGSGQEDVQMEFDMKLQLRNHERQLVSNMFMPPTANQSWRKVLSMGNLLNGHEPILREIIFSSSDHVNGGHYAPSTPRAYQQEIETYRMYICGTSNDLRVALSVTSC*
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MASTSKVDSSVDDEAEEEEFERFDDFTLASSWERFISEIEAICRQWLADGSKNLLEKGAIQLDSSKNLYKAKSELKYFMKSYCMEYYFEIKKSGEFTVWDCTLHDLQLCFGVKEFLVIAPQSASGVVLDAPEASKLLSAVAIALSNCSSLWPAFVPVHDPSRNAFIGIQNMGTIFTRRFEADRICSQVPVKLMHLEGLYELFVSKFAYSTLDFSMHVFKVRFTMKLTYKTLPYDDDDDMRGEDVENTEPTDFPGGESGTRTQWDDDCPWSEWYSAEDLVKGFGLVVIWSEKTVEGSFEMAEIENSSPHEAEKWILFPNICFFSLMHLKMSFEAQFMEDFVSVENPGSDNLKSSMVIPSPTIIDRVLKDLFHEGVQLPDFAKGQHRSSRSIKGARLESLFAQFCLHSLWFGNCNIRAIAVLWIEFVREIRWYWEESQPLPKMPVNGSIDLSTCLxxxxxxxxxxxxxxxxxxxxxFQDCIGSNDPSPADIKEDGQAVDGSNNLRIPDENFDRNCDSQLTADGLRESGNAIQRYTMKPQDVASIDKKPSDFVRRGSAGKVGSMMLLKSYQSMHAPFTQDAPLMTEDMHEERLHAVEAFSNSFEFSAQLERDILLSDMSAFKAANPDAVFEDFIRWHSPGDWLNDDGKENGPSGIPAVEDLKENWPPQGRLSQRMSEHGNLWRKIWNEAPAVSASEQKPLLDPNREGEKILHYLETLRPNDLLEQMVCTAFRASADTLNQTHFGALKQMAMKMDQLYITMSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVAASLHRKFLQAPRISEAIFSDFYDFYLPKMGRGSGQEDVQMEFDMKLQLRNHERQLVSNMFMPPTANQSWRKVLSMGNLLNGHEPILREIIFSSSDHVNGGHYAPSTPRAYQQEIETYRMYICGTSNDLRVALSVTSCD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query934 2.2.26 [Sep-21-2011]
P69735775 Rab3 GTPase-activating pr yes no 0.397 0.478 0.308 8e-39
Q642R9978 Rab3 GTPase-activating pr N/A no 0.401 0.383 0.304 4e-38
Q80UJ7981 Rab3 GTPase-activating pr yes no 0.422 0.402 0.288 8e-38
Q15042981 Rab3 GTPase-activating pr yes no 0.399 0.380 0.294 2e-35
Q6NUV0969 Rab3 GTPase-activating pr yes no 0.398 0.383 0.286 1e-34
Q9VQ26916 Rab3 GTPase-activating pr yes no 0.593 0.604 0.244 3e-33
Q93538915 Rab3 GTPase-activating pr yes no 0.267 0.273 0.260 3e-17
>sp|P69735|RB3GP_RAT Rab3 GTPase-activating protein catalytic subunit (Fragments) OS=Rattus norvegicus GN=Rab3gap1 PE=1 SV=2 Back     alignment and function desciption
 Score =  163 bits (412), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 131/424 (30%), Positives = 201/424 (47%), Gaps = 53/424 (12%)

Query: 402 FCLHSLWFGNCNIRAIAVLWIEFVREIRWYWEESQPLPKMPVNGSIDLSTCLINQKLQML 461
            CL  + F +  ++ +A LW EFV E+R+ WE +  +P +  +G  DL  CL++QKLQML
Sbjct: 255 LCLCMINFYHGGLKGVAHLWQEFVLEMRFRWENNFLIPGL-ASGPPDLRCCLLHQKLQML 313

Query: 462 AICIE--KMRELNEEFQDCIGSNDPSPADIKEDGQAVDGSNNLRIPDE-------NFDRN 512
             CIE  K R+  ++           PAD  + G  + G ++LR  ++       ++D  
Sbjct: 314 NCCIERKKARDEGKKTSPSDSMTKAYPADAGKAGGQL-GLDHLRDTEKEKGEAGKSWDSW 372

Query: 513 CDSQ-------LTADGLRESGNAIQRYTMK--PQDVASIDKKPSDFVRRGSAGKVGSMML 563
            DS+         A+ LR +G   Q  T K  P+D+A +  KP      G   + G + L
Sbjct: 373 SDSEEEFFECLSDAEDLRGNG---QESTKKGGPKDMAPL--KPE-----GRLHQHGKLTL 422

Query: 564 LKSYQSMHAPFTQDAPLMTEDMHEERLHAVEAFSNSFE---FSAQLERDILLSDMSAFKA 620
           L++ + ++ P TQ+   MTED+ EE+   +     S E     A+++   LLSDM +FKA
Sbjct: 423 LRNGEPLYIPVTQEPAPMTEDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKA 482

Query: 621 ANPDAVFEDFIRWHSPGDWLNDDGKENGPSGIPAVEDLKENWPPQGRLSQRMSEHGNLWR 680
           ANP    EDF+RW+SP D++ ++           V D K N   +G LS RM    N+W 
Sbjct: 483 ANPGCCLEDFVRWYSPRDYIEEE-----------VTDEKGNVVLKGELSARMKIPSNMWV 531

Query: 681 KIWNEAPAVSASEQKPLLDPNREGEKILHYLETLRPNDLLEQMV-CTAFRASADTLNQTH 739
           + W  A  V A  Q+ L D  RE EK+LHYL   +P DL   ++ C    A      +  
Sbjct: 532 EAWETAKPVPARRQRRLFDDTREAEKVLHYLAMQKPADLARHLLPCVIHAAVLKVKEEES 591

Query: 740 FGALKQMAMKMDQLYITMSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVAASL 799
              +  +   + Q+    S VL+          S   + L  + +    VE ++  A SL
Sbjct: 592 LENIPSVKKIIKQIIAHSSKVLR--------FPSPEDKKLEEIILQITTVEAIIARARSL 643

Query: 800 HRKF 803
             KF
Sbjct: 644 KAKF 647
Probable catalytic subunit of a GTPase activating protein that has specificity for Rab3 subfamily (RAB3A, RAB3B, RAB3C and RAB3D). Rab3 proteins are involved in regulated exocytosis of neurotransmitters and hormones. Specifically converts active Rab3-GTP to the inactive form Rab3-GDP. Required for normal eye and brain development. May participate in neurodevelopmental processes such as proliferation, migration and differentiation before synapse formation, and non-synaptic vesicular release of neurotransmitters.
Rattus norvegicus (taxid: 10116)
>sp|Q642R9|RB3GP_XENLA Rab3 GTPase-activating protein catalytic subunit OS=Xenopus laevis GN=rab3gap1 PE=2 SV=1 Back     alignment and function description
>sp|Q80UJ7|RB3GP_MOUSE Rab3 GTPase-activating protein catalytic subunit OS=Mus musculus GN=Rab3gap1 PE=2 SV=4 Back     alignment and function description
>sp|Q15042|RB3GP_HUMAN Rab3 GTPase-activating protein catalytic subunit OS=Homo sapiens GN=RAB3GAP1 PE=1 SV=3 Back     alignment and function description
>sp|Q6NUV0|RB3GP_DANRE Rab3 GTPase-activating protein catalytic subunit OS=Danio rerio GN=rab3gap1 PE=2 SV=2 Back     alignment and function description
>sp|Q9VQ26|RB3GP_DROME Rab3 GTPase-activating protein catalytic subunit OS=Drosophila melanogaster GN=CG31935 PE=1 SV=2 Back     alignment and function description
>sp|Q93538|RB3GP_CAEEL Rab3 GTPase-activating protein catalytic subunit OS=Caenorhabditis elegans GN=rbg-1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query934
297745850966 unnamed protein product [Vitis vinifera] 0.997 0.964 0.714 0.0
224105899940 predicted protein [Populus trichocarpa] 0.978 0.972 0.706 0.0
255571342946 conserved hypothetical protein [Ricinus 0.985 0.972 0.705 0.0
356569500969 PREDICTED: LOW QUALITY PROTEIN: rab3 GTP 0.951 0.917 0.681 0.0
449455007943 PREDICTED: rab3 GTPase-activating protei 0.982 0.973 0.650 0.0
356537585938 PREDICTED: LOW QUALITY PROTEIN: rab3 GTP 0.948 0.944 0.668 0.0
297796775963 hypothetical protein ARALYDRAFT_495970 [ 0.993 0.963 0.637 0.0
22327950963 uncharacterized protein [Arabidopsis tha 0.993 0.963 0.634 0.0
115452451899 Os03g0295700 [Oryza sativa Japonica Grou 0.898 0.933 0.560 0.0
357112683890 PREDICTED: rab3 GTPase-activating protei 0.900 0.944 0.561 0.0
>gi|297745850|emb|CBI15906.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1415 bits (3664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 692/968 (71%), Positives = 797/968 (82%), Gaps = 36/968 (3%)

Query: 1   MASTSKVDSSVDDEAEEEEFERFDDFTLASSWERFISEIEAICRQWLADGSKNLLEKGAI 60
           MAS+SK++++  D+  EEE ERFDDFTLASSWERFISEIEA+CR WLADG KNLLEKGA+
Sbjct: 1   MASSSKMEATGKDD--EEELERFDDFTLASSWERFISEIEAVCRLWLADGPKNLLEKGAV 58

Query: 61  QLDSSKNLYKAKSELKYFMKSYCMEYYFEIKKSGEFTVWDCTLHDLQLCFGVKEFLVIAP 120
            L  S++LYK K ELKY MKSY MEYYFE   +G+ T W  ++HDLQL FGVKEFLVIAP
Sbjct: 59  HLGFSRDLYKVKFELKYLMKSYFMEYYFETTSAGKVTDWKFSMHDLQLSFGVKEFLVIAP 118

Query: 121 QSASGVVLDAPEASKLLSAVAIALSNCSSLWPAFVPVHDPSRNAFIGIQNMGTIFTRRFE 180
           QSASGVVLDAPEASKLLSA+AIALSNCSSLWPAFVPVHDPSR A+IGIQNMGT+FTRRFE
Sbjct: 119 QSASGVVLDAPEASKLLSAIAIALSNCSSLWPAFVPVHDPSRKAYIGIQNMGTVFTRRFE 178

Query: 181 ADRICSQVPVKLMHLEGLYELFVSKFAYSTLDFSMHVFKVRFTMKLTYKTLPYDDDDD-- 238
           ADRI SQVPVKLMHLEGLYELFVSKFA++TLD S H+FKV FTMKLTY+TLPYDDDD+  
Sbjct: 179 ADRIGSQVPVKLMHLEGLYELFVSKFAFATLDVSTHLFKVHFTMKLTYRTLPYDDDDNDV 238

Query: 239 -MRGEDVENTEPTDFPGGESGTRTQWDDDCPWSEWYSAEDLVKGFGLVVIWSEKTVEGSF 297
            ++G D + TE    P G++  + QWDDDCPWSEWYSAED +KGF L+ +WSEK VE S 
Sbjct: 239 DIQGADADITESGGTPSGDTRNKAQWDDDCPWSEWYSAEDPIKGFELIALWSEKMVENSL 298

Query: 298 EMAEIENSSPHEAEKWILFPNIC-------------FFSLMHL-----KMSFEAQFMEDF 339
           EMAE+EN+SPHEAEKWI+FPN+              F S +HL      MSFEAQFMEDF
Sbjct: 299 EMAELENASPHEAEKWIVFPNLSSHLVDGLRENTMGFSSQLHLLVNALDMSFEAQFMEDF 358

Query: 340 VSVENPGSDNLKSSMVIPSPTIIDRVLKDLFHEGVQLPDFAKGQHRSSRSIKGARLESLF 399
           VSVE  GSDNLKSSMVIP PT++DRVLKDLFH+GV+ PD  K +H+SSR+IKGA L SLF
Sbjct: 359 VSVEKSGSDNLKSSMVIPPPTVLDRVLKDLFHDGVESPDLTKAEHKSSRAIKGAPLGSLF 418

Query: 400 AQFCLHSLWFGNCNIRAIAVLWIEFVREIRWYWEESQPLPKMPVNGSIDLSTCLINQKLQ 459
           AQFCLHSLWFGNCNIRAIA LWIEFVRE+RW WEESQPLP M  +G IDLSTCLINQKL+
Sbjct: 419 AQFCLHSLWFGNCNIRAIASLWIEFVREVRWCWEESQPLPHMAASGVIDLSTCLINQKLK 478

Query: 460 MLAICIEKMRELNEEFQDCIGSNDPSPADIKEDGQAVDGSNNLRIPDENFDRNCDSQ--- 516
           MLAICIEK R+L+E++QD I S   +P +++ED    + S+++R P E+FD   DS    
Sbjct: 479 MLAICIEKKRQLSEDYQDSIESKVSTPIEMQEDILIQEDSSHMRTPTEDFDGKRDSMRNT 538

Query: 517 ---------LTADGLRESGNAIQRYTMKPQD-VASIDKKPSDFVRRGSAGKVGSMMLLKS 566
                    LTA+GL  SG  + R++ +P+D V   D+KPSD +RRGSAG VG+MMLL S
Sbjct: 539 RGSLVIKRPLTANGLSNSGATVSRFSTEPEDAVVCADQKPSDGIRRGSAGVVGNMMLLNS 598

Query: 567 YQSMHAPFTQDAPLMTEDMHEERLHAVEAFSNSFEFSAQLERDILLSDMSAFKAANPDAV 626
           +Q++H PFTQDAPLMTEDMHEERL AVEAF +SF FSAQLE+DIL SDMSAFKAANPD+V
Sbjct: 599 HQNLHVPFTQDAPLMTEDMHEERLQAVEAFGDSFSFSAQLEKDILSSDMSAFKAANPDSV 658

Query: 627 FEDFIRWHSPGDWLNDDGKENGPSGIPAVEDLKENWPPQGRLSQRMSEHGNLWRKIWNEA 686
           FEDFIRWHSPGDW++DD KE G S   A E  K++WPP+GRLS+RMSEHGN WRK+W +A
Sbjct: 659 FEDFIRWHSPGDWVDDDIKEGGVSRSHAAEGSKDDWPPRGRLSERMSEHGNSWRKLWKDA 718

Query: 687 PAVSASEQKPLLDPNREGEKILHYLETLRPNDLLEQMVCTAFRASADTLNQTHFGALKQM 746
           P + ASEQKPLLDPNREGEK+LHYLETLRP+ LLEQMVCTAFRASADTLNQT+FG LKQM
Sbjct: 719 PTLPASEQKPLLDPNREGEKVLHYLETLRPHQLLEQMVCTAFRASADTLNQTNFGGLKQM 778

Query: 747 AMKMDQLYITMSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVAASLHRKFLQA 806
             K+ QLY+TM+S LKPLQ+N+L GDSE IED+RRLCVVFEHVEKLLT+AASL+RKFLQA
Sbjct: 779 TTKIGQLYLTMASTLKPLQSNHLFGDSEIIEDVRRLCVVFEHVEKLLTLAASLYRKFLQA 838

Query: 807 PRISEAIFSDFYDFYLPKMGRGSGQEDVQMEFDMKLQLRNHERQLVSNMFMPPTANQSWR 866
           PR+ EAIFSD+Y+FYLPKMG GS   DV  EFD K Q+R HERQ+++NMF PPTANQSWR
Sbjct: 839 PRLREAIFSDYYNFYLPKMGTGSVGGDVHKEFDSKQQVRFHERQVLANMFTPPTANQSWR 898

Query: 867 KVLSMGNLLNGHEPILREIIFSSSDHVNGGHYAPSTPRAYQQEIETYRMYICGTSNDLRV 926
           KVLSMGNLLNGHEPILREIIFS+ D V+G HYA ST R Y+QEIETYRMYICGTSNDL+V
Sbjct: 899 KVLSMGNLLNGHEPILREIIFSTWDRVSGNHYAASTSRGYEQEIETYRMYICGTSNDLQV 958

Query: 927 ALSVTSCD 934
           ALSV SCD
Sbjct: 959 ALSVASCD 966

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224105899|ref|XP_002313972.1| predicted protein [Populus trichocarpa] gi|222850380|gb|EEE87927.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255571342|ref|XP_002526620.1| conserved hypothetical protein [Ricinus communis] gi|223534060|gb|EEF35779.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356569500|ref|XP_003552938.1| PREDICTED: LOW QUALITY PROTEIN: rab3 GTPase-activating protein catalytic subunit-like [Glycine max] Back     alignment and taxonomy information
>gi|449455007|ref|XP_004145245.1| PREDICTED: rab3 GTPase-activating protein catalytic subunit-like [Cucumis sativus] gi|449515010|ref|XP_004164543.1| PREDICTED: rab3 GTPase-activating protein catalytic subunit-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356537585|ref|XP_003537307.1| PREDICTED: LOW QUALITY PROTEIN: rab3 GTPase-activating protein catalytic subunit-like [Glycine max] Back     alignment and taxonomy information
>gi|297796775|ref|XP_002866272.1| hypothetical protein ARALYDRAFT_495970 [Arabidopsis lyrata subsp. lyrata] gi|297312107|gb|EFH42531.1| hypothetical protein ARALYDRAFT_495970 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22327950|ref|NP_200659.2| uncharacterized protein [Arabidopsis thaliana] gi|20259512|gb|AAM13876.1| unknown protein [Arabidopsis thaliana] gi|21436471|gb|AAM51436.1| unknown protein [Arabidopsis thaliana] gi|332009678|gb|AED97061.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|115452451|ref|NP_001049826.1| Os03g0295700 [Oryza sativa Japonica Group] gi|108707640|gb|ABF95435.1| expressed protein [Oryza sativa Japonica Group] gi|113548297|dbj|BAF11740.1| Os03g0295700 [Oryza sativa Japonica Group] gi|215695477|dbj|BAG90640.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357112683|ref|XP_003558137.1| PREDICTED: rab3 GTPase-activating protein catalytic subunit-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query934
TAIR|locus:2171203963 AT5G58510 "AT5G58510" [Arabido 0.888 0.861 0.638 4.4e-297
UNIPROTKB|E1BT09988 RAB3GAP1 "Uncharacterized prot 0.417 0.394 0.307 2.9e-50
UNIPROTKB|A4FUE5982 RAB3GAP1 "RAB3GAP1 protein" [B 0.426 0.405 0.302 3.1e-49
UNIPROTKB|E2RK37979 RAB3GAP1 "Uncharacterized prot 0.408 0.390 0.314 3.9e-49
MGI|MGI:2445001981 Rab3gap1 "RAB3 GTPase activati 0.462 0.440 0.294 5.6e-48
UNIPROTKB|C9J837988 RAB3GAP1 "Rab3 GTPase-activati 0.416 0.393 0.300 6.5e-47
UNIPROTKB|Q15042981 RAB3GAP1 "Rab3 GTPase-activati 0.416 0.396 0.300 7.3e-47
UNIPROTKB|J9NVN6878 RAB3GAP1 "Uncharacterized prot 0.408 0.435 0.314 5e-46
ZFIN|ZDB-GENE-061027-53969 rab3gap1 "RAB3 GTPase activati 0.464 0.447 0.272 5.5e-46
UNIPROTKB|F1S0D4868 RAB3GAP1 "Uncharacterized prot 0.427 0.459 0.302 1.3e-45
TAIR|locus:2171203 AT5G58510 "AT5G58510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2852 (1009.0 bits), Expect = 4.4e-297, P = 4.4e-297
 Identities = 554/867 (63%), Positives = 665/867 (76%)

Query:    99 WDCTLHDLQLCFGVKEFLVIAPQSASGVVLDAPEASKLLSAVAIALSNCSSLWPAFVPVH 158
             W+   HDLQLCFGVK+FL+IAPQSASGV+LD PE+SKLLSAVAIALSNC SLWPAFVPVH
Sbjct:   103 WNSNSHDLQLCFGVKDFLLIAPQSASGVLLDTPESSKLLSAVAIALSNCGSLWPAFVPVH 162

Query:   159 DPSRNAFIGIQNMGTIFTRRFEADRICSQVPVKLMHLEGLYELFVSKFAYSTLDFSMHVF 218
             DPSR A+IGIQNMGT+FTRRFEADR+ SQVPVKLMHLEGLYELFVSKF YS +DFSMH F
Sbjct:   163 DPSRKAYIGIQNMGTVFTRRFEADRVGSQVPVKLMHLEGLYELFVSKFVYSGVDFSMHTF 222

Query:   219 KVRFTMKLTYKTLPYXXXXX-MRGEDV--ENTEPTDFPGGESGTRTQWDDDCPWSEWYSA 275
             +V F M+LTY+T PY      +  ++V  + ++  +  G ES  +  WDDDCPWSEWYSA
Sbjct:   223 RVHFMMRLTYQTFPYDEEDEEIDTDEVMGDKSDTAEHYGSESRNKVLWDDDCPWSEWYSA 282

Query:   276 EDLVKGFGLVVIWSEKTVEGSFEMAEIENSSPHEAEKWILFP-------------NICFF 322
             ED ++GF LVV W+++TVE + EMAE+EN+SPH+AEKWIL P              I F 
Sbjct:   283 EDPLRGFELVVTWADRTVESTLEMAELENASPHDAEKWILHPILSPYLGDPSHGKRIDFA 342

Query:   323 SLM-----HLKMSFEAQFMEDFVSVENPGSDNLKSSMVIPSPTIIDRVLKDLFHEGVQLP 377
             S +      L  SF AQFMEDFVSVENP S+NLK+S+VIP P+++DRV+KDLF EG +LP
Sbjct:   343 SQLLCLVEALDSSFSAQFMEDFVSVENPSSENLKTSVVIPPPSVLDRVIKDLFREGSKLP 402

Query:   378 DFAKGQHRSSRSIKGARLESLFAQFCLHSLWFGNCNIRAIAVLWIEFVREIRWYWEESQP 437
             DF KG+HR SR++K A LESLF QFCLHSLWFGNCNIRAIA LWIEFVRE+RW WEE+QP
Sbjct:   403 DFTKGEHRLSRALKAAPLESLFTQFCLHSLWFGNCNIRAIAFLWIEFVREVRWCWEETQP 462

Query:   438 LPKMPVNGSIDLSTCLINQKLQMLAICIEKMRELNEEFQDCIGSNDPSPADIK-EDGQAV 496
             LPKMP++GSIDLS+CLINQKL +LAICIEK RE+NEEF DCIGS+D S A +  E+   V
Sbjct:   463 LPKMPIDGSIDLSSCLINQKLHLLAICIEKKREMNEEFLDCIGSDDSSDASVSMEEHHKV 522

Query:   497 DGSNNLRIPDENFDRNCDSQLTADGLRESGNAIQRYTMKPQDVASIDKKPSDFVRRGSAG 556
             D   N    +E   R  DS +  D  ++      R+  K +   S+++ P+D +RRGSAG
Sbjct:   523 DKRRNTS-SEEELRRKRDSSIAEDTSKQL-----RFERKTERTNSVNQSPTDAIRRGSAG 576

Query:   557 KVGSMMLLKSYQSMHAPFTQDAPLMTEDMHEERLHAVEAFSNSFEFSAQLERDILLSDMS 616
              VG+MMLLKS Q +HAPFTQD PLMTEDMHEERL AVEAF +S     QLE+DILLSDMS
Sbjct:   577 PVGTMMLLKSRQQLHAPFTQDPPLMTEDMHEERLQAVEAFGDSLNVPGQLEKDILLSDMS 636

Query:   617 AFKAANPDAVFEDFIRWHSPGDWLNDDGKENGPSGIPAVEDLKENWPPQGRLSQRMSEHG 676
             AFKAANPDAVFEDFIRWHSPGDW + + K   PS  P+ E  K+ WPP+GRLSQRMS+ G
Sbjct:   637 AFKAANPDAVFEDFIRWHSPGDWESFEPKTTEPSAGPSTEGSKDEWPPRGRLSQRMSDQG 696

Query:   677 NLWRKIWNEAPAVSASEQKPLLDPNREGEKILHYLETLRPNDLLEQMVCTAFRASADTLN 736
             NLWRK WN+APA+ A +QKPLLDPNREGEKI+HYLET+RP+ LLEQMVCTAFR SADTLN
Sbjct:   697 NLWRKSWNDAPALPADDQKPLLDPNREGEKIVHYLETVRPHQLLEQMVCTAFRGSADTLN 756

Query:   737 QTHFGALKQMAMKMDQLYITMSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVA 796
             QT+ G ++QM  K++QLY+ M   L  LQ NNL   ++T++DL+RLC+VFE+VEKL+ VA
Sbjct:   757 QTNVGNMRQMTSKLEQLYLIMKFTLGALQRNNLPDKAKTVKDLKRLCMVFENVEKLVAVA 816

Query:   797 ASLHRKFLQAPRISEAIFSDFYDFYLPKMGRGSGQEDVQMEFDMKLQLRN---HERQLVS 853
             AS+HRKFL A R+++ IFSDFY  Y P MG  +  E+ +   +M++  +     ERQ+VS
Sbjct:   817 ASIHRKFLDASRLAQVIFSDFYGVYAPTMGMSANDEENKSRTEMEVSRQEVSLRERQVVS 876

Query:   854 NMFMPPTANQSWRKVLSMGNLLNGHEPILREIIFSSSDHVNGG-HYAPSTPRAYQ----- 907
             N+F PP+ANQSWRKVLSMGNLLNGHEPILREIIFS+ D VN G HYA +   A       
Sbjct:   877 NLFSPPSANQSWRKVLSMGNLLNGHEPILREIIFSTGDDVNNGIHYAAAADVAATSDRKG 936

Query:   908 QEIETYRMYICGTSNDLRVALSVTSCD 934
             +EIET+RMY+ GTSNDLRV LSVTSCD
Sbjct:   937 EEIETHRMYVSGTSNDLRVGLSVTSCD 963
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=IDA
GO:0006486 "protein glycosylation" evidence=RCA
UNIPROTKB|E1BT09 RAB3GAP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A4FUE5 RAB3GAP1 "RAB3GAP1 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RK37 RAB3GAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2445001 Rab3gap1 "RAB3 GTPase activating protein subunit 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|C9J837 RAB3GAP1 "Rab3 GTPase-activating protein catalytic subunit" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q15042 RAB3GAP1 "Rab3 GTPase-activating protein catalytic subunit" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9NVN6 RAB3GAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061027-53 rab3gap1 "RAB3 GTPase activating protein subunit 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1S0D4 RAB3GAP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00024044001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (945 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query934
pfam13890165 pfam13890, Rab3-GTPase_cat, Rab3 GTPase-activating 2e-71
>gnl|CDD|222437 pfam13890, Rab3-GTPase_cat, Rab3 GTPase-activating protein catalytic subunit Back     alignment and domain information 
 Score =  232 bits (595), Expect = 2e-71
 Identities = 82/166 (49%), Positives = 105/166 (63%), Gaps = 14/166 (8%)

Query: 551 RRGSAGKVGSMMLLKSYQSMHAPFTQDAPLMTEDMHEERLHAVEAFSNSFE---FSAQLE 607
           R G  G VG +MLL++ + ++AP TQ+ P MTEDM EER  A+    +S E     A+L+
Sbjct: 11  REGRLGPVGKLMLLETGEPLYAPITQEPPPMTEDMLEERAEALLKLGDSEEGSHLRARLQ 70

Query: 608 RDILLSDMSAFKAANPDAVFEDFIRWHSPGDWLNDDGKENGPSGIPAVEDLKENWPPQGR 667
            D LLSDMSAFKAANP AVFEDF+RW+SP DW+              V D   +   +G 
Sbjct: 71  SDSLLSDMSAFKAANPGAVFEDFVRWYSPRDWIE-----------EEVTDETGSDADRGY 119

Query: 668 LSQRMSEHGNLWRKIWNEAPAVSASEQKPLLDPNREGEKILHYLET 713
           LS+RM   GN+W ++W  AP + A EQKPL DP +E EK+LHYLET
Sbjct: 120 LSERMRIEGNVWWELWERAPPLPAREQKPLFDPTKEAEKVLHYLET 165

This family is the probable catalytic subunit of the GTPase activating protein that has specificity for Rab3 subfamily (RAB3A, RAB3B, RAB3C and RAB3D). It is likely to convert active Rab3-GTP to the inactive form Rab3-GDP. Rab3 proteins are involved in regulated exocytosis of neurotransmitters and hormones. The Rab3 GTPase-activating complex is a heterodimer composed of RAB3GAP and RAB3-GAP150. This complex interacts with DMXL2. Length = 165

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 934
KOG2390669 consensus Uncharacterized conserved protein [Funct 100.0
PF13890164 Rab3-GTPase_cat: Rab3 GTPase-activating protein ca 100.0
>KOG2390 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-106  Score=903.85  Aligned_cols=624  Identities=21%  Similarity=0.247  Sum_probs=456.7

Q ss_pred             eeeeecCCccceeEeEecCCceeeEEeeeeeccccCCCcccchhhhHHHHHhhcCCcccccCcceeEEEEEEEEEEeeCC
Q 038749          153 AFVPVHDPSRNAFIGIQNMGTIFTRRFEADRICSQVPVKLMHLEGLYELFVSKFAYSTLDFSMHVFKVRFTMKLTYKTLP  232 (934)
Q Consensus       153 ~FVqV~dp~r~~y~Gv~~~~~v~~~rFe~~~i~~~vP~~~~hLsGLLdlFksKl~~~~~d~~~~~v~V~iS~r~TY~l~~  232 (934)
                      +||+|++.|+   .|+|..+.+ ++.|.++|+.    .+++|++||+++|++|+|++..+.+.    +.     ||+++.
T Consensus         1 vf~~i~~~w~---~~e~~~~~v-~t~~~~vhlr----~~~~~~~~l~~l~k~~~~~~l~~~~e----es-----t~v~p~   63 (669)
T KOG2390|consen    1 VFCYIKDQWL---SGEASDGNV-TTNFSSVHLR----RRHCSMTDLLYLFKEHLGASISAFHE----ES-----THVVPL   63 (669)
T ss_pred             CeEEEeecee---eeeeccCCc-ccceeeEEec----chhhhhhhhhhhhhhhcCCCccccch----hh-----hhhhhh
Confidence            5999999999   999999999 9999999973    78899999999999999999988865    22     888887


Q ss_pred             CCCCccccCccccCCCCCCCCCCCCCcccCCCCCCCCCccccccccccceEEEEecCCcccccccccccccCCCcccccc
Q 038749          233 YDDDDDMRGEDVENTEPTDFPGGESGTRTQWDDDCPWSEWYSAEDLVKGFGLVVIWSEKTVEGSFEMAEIENSSPHEAEK  312 (934)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~fGa~~DPi~el~L~atWP~l~~~~~~d~~~~sdLdP~~Ap~  312 (934)
                      ++..++....            ..              .+|                            ++|+||..++.
T Consensus        64 ~q~~f~~~~~------------~~--------------~~~----------------------------~sd~d~~~~~~   89 (669)
T KOG2390|consen   64 KQSKFFRNHT------------VE--------------TFG----------------------------HSDFDINYSSY   89 (669)
T ss_pred             Hhhhhhhccc------------hh--------------hcc----------------------------cccCCccchhh
Confidence            7654444110            00              022                            68999999999


Q ss_pred             eEEeeeehh---h---cch--hhhhhhhhhhcccccc-------------------ccCCCCccc---ccc--cCCC--C
Q 038749          313 WILFPNICF---F---SLM--HLKMSFEAQFMEDFVS-------------------VENPGSDNL---KSS--MVIP--S  358 (934)
Q Consensus       313 W~l~~~~~f---~---s~L--a~~~s~~~~~~ed~v~-------------------~~~~s~~~l---~~s--~~ip--~  358 (934)
                      |.++++-+=   +   .++  ++..........|++.                   ...++...+   +++  ...+  +
T Consensus        90 ~~~~v~~~~~pl~~v~d~~~~~~~e~~rk~~~~d~~~S~~~~~~~e~~~l~~af~k~t~~a~~e~k~g~h~~~ed~vs~~  169 (669)
T KOG2390|consen   90 WNIKVKSTKSPLLGVLDEILGVYREDTRKAIRSDLNCSLILGKHYEQKELPNAFQKLTINSASEVKIGKHAETEDSVTNG  169 (669)
T ss_pred             hhhhhhhccCccccchhhHHHHhHhhhhhhhHHHHhhhhhcccchhhcccchHHHhhccccccchhhccccccccccccc
Confidence            999988761   1   111  1111111122222210                   000110000   111  1111  2


Q ss_pred             hHHHHHHHHhhcCCCCCCCCccccccCccccccCCCCcChHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHhCCCC
Q 038749          359 PTIIDRVLKDLFHEGVQLPDFAKGQHRSSRSIKGARLESLFAQFCLHSLWFGNCNIRAIAVLWIEFVREIRWYWEESQPL  438 (934)
Q Consensus       359 p~vL~~IL~~LFpda~~~~~~~~~~~~l~~~iKsAP~dSL~~rlal~~~~~~~~~~~~vA~LW~efV~ELR~~WE~~~~i  438 (934)
                      |......++++|..+..+..+..-..++..+.+.||++|    .|+++.|+.+.|+..+|++|.++|.|+|++|.++.+|
T Consensus       170 ~aL~~~~~~f~~~~a~sd~es~~~~~n~~n~~~~ap~~s----~~Ll~~~~~~~t~~~~a~~w~a~v~e~r~~w~~~s~i  245 (669)
T KOG2390|consen  170 PALMKSWVNFIFNEAESDNESLAHELNMLNAASMAPNQS----DDLLVNNVKLDTLFNYANPWSANVFEARYKWAKKSTI  245 (669)
T ss_pred             chhhhcCccccchhccCCccccchhhhhhhHhhcCCCch----hHHHHHhhhccchhhhhhHHHHHHHHHHHHHhhcCcC
Confidence            323333333344333322111122456788999999999    6777777788899999999999999999999999999


Q ss_pred             CCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-hhhhhhhccCCCCCCCCCcccccccccCCCCCCCCCCcccccccCccc
Q 038749          439 PKMPVNGSIDLSTCLINQKLQMLAICIEKMR-ELNEEFQDCIGSNDPSPADIKEDGQAVDGSNNLRIPDENFDRNCDSQL  517 (934)
Q Consensus       439 Pg~~~~~~pDl~~CLLhQKLQMLN~CI~rk~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~~  517 (934)
                      |+.+..+.||+++||||||||||||||+||+ .|++..+....+.+     -...+..++  -+.++++.+||.+. .. 
T Consensus       246 pw~~a~~~PDlR~CLLHQ~LQmlNcCveRk~~~rea~ek~~ayG~~-----gkA~s~~~E--~d~ddsE~eff~ld-a~-  316 (669)
T KOG2390|consen  246 PWRLAIALPDLRVCLLHQPLQMLNCCVERKLKLREAYEKMEAYGID-----GKACSFSQE--MDMDDSEKEFFMLD-AH-  316 (669)
T ss_pred             CcccccCCCcchhhhhcchHHHHHHHHHHHHHHHHhhhhhhhhcch-----hhhccchhh--cccccchhHHHHHH-HH-
Confidence            9999999999999999999999999999999 66665433221110     011111111  11247778899853 11 


Q ss_pred             ccccCcCccchhcccccCCccccccCCCCCccccccccCccCceecccC-CCccccCCCCCCCCCCHHHHHHHHHHHHHc
Q 038749          518 TADGLRESGNAIQRYTMKPQDVASIDKKPSDFVRRGSAGKVGSMMLLKS-YQSMHAPFTQDAPLMTEDMHEERLHAVEAF  596 (934)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~~~~~~~~Ll~~-~e~l~~P~tQ~~~p~TeD~l~e~~~~l~~l  596 (934)
                          +.+++.+.|         +...++|     +|++..+++++||++ |+|||||+||||+|||||||+|++|+|++|
T Consensus       317 ----sagns~e~k---------a~l~l~p-----egrlr~l~nltLLe~pdEplYiPvTQEp~plTEDli~e~~Evllkl  378 (669)
T KOG2390|consen  317 ----SAGNSDEFK---------AELILEP-----EGRLRLLFNLTLLEIPDEPLYIPVTQEPCPLTEDLIDERNEVLLKL  378 (669)
T ss_pred             ----hccCCchhh---------hhhccCc-----cchhhhhcCeeeeccCCCceeecccCCCCCCcHHHHHHHHHHHHhc
Confidence                112222221         1222444     577777999999998 999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHhhhhhhhhcCCCcchhhhhhccCCCCcccCCCCCCCCCCCCccccccCCCCCCccccccccccC
Q 038749          597 SNSFEFSAQLERDILLSDMSAFKAANPDAVFEDFIRWHSPGDWLNDDGKENGPSGIPAVEDLKENWPPQGRLSQRMSEHG  676 (934)
Q Consensus       597 g~~~~~r~~mqs~~LlSDM~aFKaANpg~~~eDFVRW~SPrDwi~~~~~~~~~~~~~~~~~~~~~~~~~g~LS~RM~~~~  676 (934)
                      |++..++.|||+.+|||||+|||||||||+||||||||||+||  ++.+++.++            +.+|+||.||+++|
T Consensus       379 G~g~~L~~qm~~~~llsdmeSfkAANPgcilEDFvRWhSPkDw--eevsdEkgn------------~vkgqLS~RM~ieg  444 (669)
T KOG2390|consen  379 GEGDRLHLQMELVKLLSDMESFKAANPGCILEDFVRWHSPKDW--EEVSDEKGN------------PVKGQLSERMLIEG  444 (669)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhcCCCCccHHHhhhhcCCcch--hhhcccccc------------cchhhhhhhhcccc
Confidence            9988899999999999999999999999999999999999999  455444332            67899999999999


Q ss_pred             chHHHHhhhCCCCCccccCCCCCchhHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Q 038749          677 NLWRKIWNEAPAVSASEQKPLLDPNREGEKILHYLETLRPNDLLEQMVCTAFRASADTLNQTHFGALKQMAMKMDQLYIT  756 (934)
Q Consensus       677 N~W~~~W~~A~p~pa~~Qk~LFD~~~eaEkvLh~Le~~~p~~l~~qll~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  756 (934)
                      |+|+++|++|+|+||++|+||||+|+||||||||||+++++||++||++++||+|+.+|.. .+++...+.+...|+.+.
T Consensus       445 N~W~e~WEtAkpiPv~rQarLFDDt~eaekiLhYLe~~k~ael~e~l~~~l~haa~lkl~e-sL~n~e~~~k~~~qi~k~  523 (669)
T KOG2390|consen  445 NVWVESWETAKPIPVARQARLFDDTKEAEKILHYLENAKLAELREWLKPTLFHAALLKLTE-SLGNSEEKQKQRTQIAKI  523 (669)
T ss_pred             chHHHHHHhcCCCchhhccccccchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH-hhcchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999887 555555555555555555


Q ss_pred             HHhhhcccccCCCCCCchhHHHHHHHHHhHHHHHHHHHHHHHHhhhcC---CCh--hHHHHHHhhc--cccccCCCCCcc
Q 038749          757 MSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVAASLHRKFL---QAP--RISEAIFSDF--YDFYLPKMGRGS  829 (934)
Q Consensus       757 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~vE~~i~~a~SL~~Kf~---~~~--~~~~~~~~~~--~~~~~~~~g~g~  829 (934)
                      ++.+   |++++ +.+    ++|..||..|+.||+++.++.+|+. |.   +.+  ..+++ ++ +  ++|...    |.
T Consensus       524 ls~~---c~~~~-~~d----~eL~~ic~qie~ve~m~~R~~qlk~-fem~~~yps~sslq~-vk-L~~~evl~~----d~  588 (669)
T KOG2390|consen  524 LSNA---CLNNT-PMD----NELSKICSQIEMVENMKVRLMQLKE-FEMHPPYPSESSLQS-VK-LVNIEVLNL----DE  588 (669)
T ss_pred             HHHH---HcCCC-ccc----hhHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCccchhh-hh-cccHhhhcc----Cc
Confidence            5555   67765 232    4677788899999999999999999 53   222  34555 44 4  566655    77


Q ss_pred             cccchhHhHHHHHHhhhhhhhhhhccCCCCCcchhhhhhhccCCCCCCCCCcceeEEEeecccCCCCCCCCCCCcccccc
Q 038749          830 GQEDVQMEFDMKLQLRNHERQLVSNMFMPPTANQSWRKVLSMGNLLNGHEPILREIIFSSSDHVNGGHYAPSTPRAYQQE  909 (934)
Q Consensus       830 ~~~~~~~~f~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~P~~rE~ilr~~~~~~~~~~~a~~~~~~~~~  909 (934)
                      .++||+|.|+.++-..      ...+--|       ++-   ..+.+.++|+.||+|+|+..    .|.+.+.+..+   
T Consensus       589 ~~tiv~rrf~~ag~g~------L~r~~~p-------rlq---n~v~de~~~~ske~ipRtt~----~~~t~~ks~~l---  645 (669)
T KOG2390|consen  589 EPTIVIRRFDPAGIGK------LDRLTEP-------RLQ---NGVRDEYIFNSKESIPRTTT----IPMTHRKSADL---  645 (669)
T ss_pred             ccceeeeccccccchH------HHhhccH-------hhh---ccCcccccccccCccccccC----Ccccccchhhc---
Confidence            7899999999988211      0002111       111   22578999999999999765    24666677662   


Q ss_pred             ccceeeEEeecccceeeeeeeec
Q 038749          910 IETYRMYICGTSNDLRVALSVTS  932 (934)
Q Consensus       910 ~~p~Rmy~~~t~~e~r~a~~~~s  932 (934)
                       -||+||...|...+|++|||||
T Consensus       646 -~pq~mrs~~t~e~~rl~gafss  667 (669)
T KOG2390|consen  646 -SPQDMRSLYTSEANRLNGAFSS  667 (669)
T ss_pred             -CCCCcchhhhhhhhhhcccccC
Confidence             3889999999999999999998

>PF13890 Rab3-GTPase_cat: Rab3 GTPase-activating protein catalytic subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query934
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 77.2 bits (189), Expect = 2e-14
 Identities = 82/575 (14%), Positives = 170/575 (29%), Gaps = 172/575 (29%)

Query: 467 KMRELNEEFQDCIGSNDPSPADIKEDGQAVDGSNNLR--IPDENFD-----RNCDSQLTA 519
           +  E   +++D +   +       ++    D  +  +  +  E  D     ++  S    
Sbjct: 10  ETGEHQYQYKDILSVFED---AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 520 --DGLRESG-NAIQRYTMKPQDVASIDKKPSDFV-RRGSAGKVGSMMLLKSYQSMHAPFT 575
               L       +Q++      V  + +    F+       +    M+ + Y        
Sbjct: 67  LFWTLLSKQEEMVQKF------VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 576 QDAPLMTEDMHEERLHAVEAFSNSFEFSAQLERDILLSDMS-------AFKAANPDAV-- 626
            D  +     +  RL        +     +  +++L+  +        A        V  
Sbjct: 121 NDNQVFA-KYNVSRLQPYLKLRQALL-ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178

Query: 627 -FEDFIRW------HSPGDWL------------NDDGKENGPSGIP-AVEDLKENWPPQG 666
             +  I W      +SP   L            N   + +  S I   +  ++       
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA------ 232

Query: 667 RLSQRMSEHG---------NLW-RKIWNE----------------APAVSASEQKPL-LD 699
            L + +             N+   K WN                    +SA+    + LD
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 700 PNR------EGEKIL-HYLETLRPNDLLEQ----------MVCTAFRASADTLNQTHFGA 742
            +       E + +L  YL+  RP DL  +          ++  + R    T +      
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIRDGLATWDN----- 346

Query: 743 LKQMAMKMDQLYITMSSVLKPLQANNLSGDSETIEDLRRL---CVVF-EHV---EKLLT- 794
            K +    D+L   + S L  L+            + R++     VF         LL+ 
Sbjct: 347 WKHV--NCDKLTTIIESSLNVLEPA----------EYRKMFDRLSVFPPSAHIPTILLSL 394

Query: 795 ------------VAASLHRKFLQAPRISEAIFSDFYDFYLPKMGRGSGQEDVQMEFDMKL 842
                       V   LH+  L   +  E+  S     YL          +++++ + + 
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-IPSIYL----------ELKVKLENEY 443

Query: 843 QLRNHERQLV----------SNMFMPPTANQSWRKVLS--MGNLLNGHEPILREIIFSSS 890
            L  H R +V          S+  +PP  +Q +   +   + N+ +     L  ++F   
Sbjct: 444 AL--H-RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500

Query: 891 D-------HVNGGHYAPSTPRAYQQEIETYRMYIC 918
                   H +    A  +     Q+++ Y+ YIC
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00