Citrus Sinensis ID: 038761

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKADGVPNSTLSSDLDVTLDPNFIQKSMSVSSPVLEHGEDGKDSMAAKRATVTSSYLLCNRVRVYTRIPDIAFPKGITLMPISEDKWVAVSLEFPNEEGN
Secondary Structure (PSIPRED)
cHHHHHHHHHHHcccccccEEEccccccccccEEEEEEEccEEEccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHccccccccccccccccccccEEEEEEEccEEEccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccEEEEEEEcccccccEEEEEEEccEEEcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccccccEEEEccccccccEEEEEEEEccEEcccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccEEEEEccccccccEEEEEEEEccEEcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHccccccEEEEEccccccccEEEEEEEEccEEEcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccEEEEccccccccccccEEEEcccccEEEEEEcccccccc
Coil and Loop (DISEMBL)
MYKTKVQELCHqkrwslprystmkdgadhdprfkssvsvnglsfhssvscksskesQNDAAKLAFLhftspppppppnvqcrYKSVLQNYarrknldsplyssiregpahacsfkarvtidghtfesLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHElslreglpvplyetikcgaphmptFISMVEVdgevfygkagrtkKKAEMKAAKVAYTALIERKLIfslpfhggrscsigsithtvkadgvpnstlssdldvtldpnfiqksmsvsspvlehgedgkdsmAAKRATVTSSYLLCNrvrvytripdiafpkgitlmpisedkWVAVSlefpneegn
Flexible Loop (DISEMBL)
myktkvqelchqkrwslprystmkdGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKagrtkkkaeMKAAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKADGVPNSTLSSDLDVTLDPNFIQKSMSVSSPVLEHGEDGKDSMAAKRATvtssyllcnrvrVYTRIPDIAFPKGITLMPISEDKWVAVSLEFPNEEGN
Low Complexity Region (SEG)
MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLsfhssvscksskesQNDAAKLAFLHFTSpppppppNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTkkkaemkaakvaYTALIERKLIFSLPFHGGRSCSIGSITHTVKADGVPNSTLSSDLDVTLDPNFIQKSMSVSSPVLEHGEDGKDSMAAKRATVTSSYLLCNRVRVYTRIPDIAFPKGITLMPISEDKWVAVSLEFPNEEGN
Disordered region (IsUnstruct)
***********************************************************************************KSVLQNYAR******PLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKADG*********************************************TVTSSYLLCNRVRVYTRIPDIAFPKGITLMPISEDKWVAVSLE*******
Disordered Region (DISOPRED)
MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSS*********QNDAAKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHT**************HAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGE*************EMKAAKVAYTA***************************************************************************************VRVYTRIPDIAFPKGITLMPISEDKWVAVS**FP*****
Disordered Region (DISEMBL)
********LCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLS***************DAAKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKA***********AKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKADGVPNSTLSSDLDVTLDPNFIQKSMSVSS***************KRATVTSSYLLCNRVRVYTRIPDIAFPKGITLMPISEDKWVAVSLEFPNEEGN
Disordered Region (DISPRO)
MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQ******AFLHFT**PPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACD*****************DDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV*****IER***************************************************************************SSYLLCNRVRVYTRIPDIAFPKGITLMPISEDKWVAVSLEFP*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKADGVPNSTLSSDLDVTLDPNFIQKSMSVSSPVLEHGEDGKDSMAAKRATVTSSYLLCNRVRVYTRIPDIAFPKGITLMPISEDKWVAVSLEFPNEEGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
Q5N8Z0	441	Double-stranded RNA-bindi	yes	no	0.643	0.532	0.443	4e-42
Q8H1D4	355	Double-stranded RNA-bindi	yes	no	0.394	0.405	0.462	3e-29
Q0DKP4	593	Double-stranded RNA-bindi	yes	no	0.416	0.256	0.424	2e-27
Q9SKN2	434	Double-stranded RNA-bindi	no	no	0.416	0.350	0.398	3e-26
Q8GY79	393	Double-stranded RNA-bindi	no	no	0.416	0.386	0.398	6e-26
Q9LJF5	359	Double-stranded RNA-bindi	no	no	0.446	0.454	0.391	8e-26
B7E321	404	Double-stranded RNA-bindi	no	no	0.454	0.410	0.390	4e-25
Q9AV50	514	Double-stranded RNA-bindi	no	no	0.427	0.303	0.432	1e-20
Q0IV63	473	Double-stranded RNA-bindi	no	no	0.410	0.317	0.354	3e-18
Q0IQN6	424	Double-stranded RNA-bindi	no	no	0.410	0.353	0.354	3e-18

>sp|Q5N8Z0|DRB1_ORYSJ Double-stranded RNA-binding protein 1 OS=Oryza sativa subsp. japonica GN=DRB1 PE=2 SV=1

 Score =  172 bits (435), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 110/248 (44%), Positives = 149/248 (60%), Gaps = 13/248 (5%)

Query: 1   MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHS-SVSCKSSKESQND 59
           MYK+++QELC Q+RW+ P Y+    G  H P F ++VSVNG+ F +   + +S+KE+ N 
Sbjct: 1   MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60

Query: 60  AAKLAFLHFTSPPPPPPPNV---QCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKA 116
           AAK AF H +S P PPPP     Q  YKS LQ YA++K    P Y +IREGP HA  FK+
Sbjct: 61  AAKAAFDHLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKS 120

Query: 117 RVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYK 176
            VT+DG  FES E+F  +K+AE AAAK+AL SL     QE     A  S  +    + YK
Sbjct: 121 VVTVDGKAFESPEYFHTVKEAESAAAKLALMSLP----QE-----ASSSEQVPVQPLSYK 171

Query: 177 NVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
           N+L EL+ + G  +P+Y T   G+  +P F S V      F G+   TKK+AEM AA+VA
Sbjct: 172 NLLQELAQKHGFSLPVYSTTSDGSVQVPMFKSTVVFQDGSFQGEPANTKKQAEMNAARVA 231

Query: 237 YTALIERK 244
           +    +R+
Sbjct: 232 FQHFEDRR 239

Binds double-stranded RNA.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H1D4|DRB4_ARATH Double-stranded RNA-binding protein 4 OS=Arabidopsis thaliana GN=DBR4 PE=1 SV=1

 Score =  129 bits (325), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/158 (46%), Positives = 93/158 (58%), Gaps = 14/158 (8%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
           YK  LQ YA + NL+ P+Y++ REGP HA  F+  VT  G TF+S EFF  LK AEHAAA
Sbjct: 5   YKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAAA 64

Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
           K+A+ SL      E I              V YKN+L E++ +E   +P Y T   G  H
Sbjct: 65  KIAVASLTPQS-PEGI-------------DVAYKNLLQEIAQKESSLLPFYATATSGPSH 110

Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
            PTF S VE  G+VF G+  +TKK AEM AAKVA+ ++
Sbjct: 111 APTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSI 148

Double-stranded RNA-binding protein involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the trans-acting small interfering RNAs (ta-siRNAs) biogenesis by binding and assisting DICER-LIKE 4 (DCL4). Required for DCL4 activity. Required for the 21 nucleotide ta-siRNAs production of the TAS3 transcript in leaves but not in flowers. Plays an important role in silencing RNA of both DNA and RNA viruses. Involved with argonaute 7 (AGO7) and RDR6 in turnip crinkle virus (TCV) silencing. May not be directly involved in viral siRNA production. May stabilize the 21 nucleotide viral siRNAs and deliver them to the RISC complex. Targeted by the viral silencing suppressor (VSR) transactivator/viroplasmin (TAV) protein of the cauliflower mosaic virus (CaMV) that inactivates DRB4 function in RNA silencing. Probably not involved in the guide strand selection from RNA duplexes. Involved in leaf morphology through its function in ta-siRNA-mediated silencing.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0DKP4|DRB2_ORYSJ Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica GN=DRB2 PE=2 SV=1

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 91/158 (57%), Gaps = 6/158 (3%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
           YK+ LQ  A+R   + P Y+ IREGP HA  FKA V  +G TFES  F   L+ AEHAAA
Sbjct: 2   YKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAAA 61

Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
           +VAL  L+      ++      +  + D+   YKN+L E + R GL +P+Y TI+ G  H
Sbjct: 62  EVALNELSKRGPSSSL------AAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGH 115

Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
            P F   VE+ G  F G  G+TKK+A+  AA  A++ L
Sbjct: 116 TPVFTCTVELAGMTFTGNPGKTKKQAQKNAAMAAWSEL 153

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SKN2|DRB2_ARATH Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana GN=DRB2 PE=1 SV=1

 Score =  119 bits (299), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 91/158 (57%), Gaps = 6/158 (3%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
           YK+ LQ  A+R   + P Y+ IREGP HA  FKA V  +G  FES ++   L+QAEH+AA
Sbjct: 2   YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSAA 61

Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
           +VAL +L+      ++      +  + D+   YKN+L E++ R G P+P Y T + G  H
Sbjct: 62  EVALNALSNRGPSHSL------AARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGH 115

Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
            P F   VE+ G  F G   + KK+AE  AA  A+++L
Sbjct: 116 QPVFTGTVELAGITFTGDPAKNKKQAEKNAAMAAWSSL 153

Binds double-stranded RNA. May be involved in RNA-mediated silencing.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY79|DRB5_ARATH Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana GN=DRB5 PE=1 SV=1

 Score =  118 bits (296), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 95/158 (60%), Gaps = 6/158 (3%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
           YK+ LQ  A+R   + P Y+ IREGP HA  FKA V  +G  FES  +   L+QAEHAAA
Sbjct: 2   YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAAA 61

Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
           +V+L  L+     +++      +  + D+   YKN+L E + R GL +P+Y +++ G+ H
Sbjct: 62  EVSLNVLSSRVPSKSL------TAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCH 115

Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
            P F   VE+ G  F G++ +TKK+AE  AA  A+++L
Sbjct: 116 FPGFSCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSL 153

Binds double-stranded RNA. May be involved in RNA-mediated silencing.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJF5|DRB3_ARATH Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana GN=DRB3 PE=2 SV=1

 Score =  118 bits (295), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 99/171 (57%), Gaps = 8/171 (4%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
           YK+ LQ  A+R     P Y+  REGP HA  FKA V  +G  FES  +   L+QAEH+AA
Sbjct: 2   YKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSAA 61

Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
           +VAL +L+     +++      +  + D+   YKN+L E + R GL +P+Y +++ G  H
Sbjct: 62  EVALSALSSKGPSKSL------TARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGH 115

Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLPFHG 253
           +PTF   VE+ G  F G++ +TKK+AE  AA  A+ +L  RK+    P  G
Sbjct: 116 IPTFSCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSL--RKMPRLDPLRG 164

Binds double-stranded RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|B7E321|DRB5_ORYSJ Double-stranded RNA-binding protein 5 OS=Oryza sativa subsp. japonica GN=DRB5 PE=2 SV=1

 Score =  115 bits (289), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 97/182 (53%), Gaps = 16/182 (8%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
           YK+ LQ  A+R     P Y   REGP HA  FKA VT +G TF+       L+QAEHAAA
Sbjct: 2   YKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAA 61

Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
           +VAL  L+      ++      +  + D+   YKN+L E + R GL +P+Y T++ G  H
Sbjct: 62  EVALARLSLRGPSSSL------TARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGH 115

Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK-------LIFSLPF---H 252
            P F S VE+ G  F G   +TKK AE  AA  A+++L +         L+F L +   H
Sbjct: 116 SPVFSSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQSNIRTTVSPLVFDLVWIVCH 175

Query: 253 GG 254
           GG
Sbjct: 176 GG 177

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9AV50|DRB6_ORYSJ Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica GN=DRB6 PE=2 SV=1

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/164 (43%), Positives = 97/164 (59%), Gaps = 8/164 (4%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
           YK+ LQ  A+R   + P Y+ +REGP HA  FKA V  +G  FES  FF  L+QAEHAAA
Sbjct: 2   YKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAAA 61

Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
           +VAL +LA          Y+  +  L + GV YKN+L E++ R G P+P Y T + G  H
Sbjct: 62  EVALAALARRGPS-----YSLAARILDETGV-YKNLLQEVAQRVGAPLPSYTTERSGLGH 115

Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLI 246
           +P F   VE+ G  F G   + KK+AE  AA  A+++L  R+L+
Sbjct: 116 LPVFTCTVELAGITFTGDPAKNKKQAEKNAASAAWSSL--RQLV 157

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0IV63|DRB7_ORYSJ Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica GN=DRB7 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 86/158 (54%), Gaps = 8/158 (5%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
           +KS LQ YA++  L +P Y + +EGP+H   FK+ V I+  +++SL  F N K AE +AA
Sbjct: 34  FKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAA 93

Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
           +VAL  +          + A+ ++    +    KN+L E + +    +P Y   K  +  
Sbjct: 94  EVALMEIVKS-------IPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGL 146

Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
            P FI  VE+ G  + G A RTKK AE+KAA+ A  A+
Sbjct: 147 AP-FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAI 183

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0IQN6|DRB8_ORYSJ Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica GN=DRB8 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 86/158 (54%), Gaps = 8/158 (5%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
           +KS LQ YA++  L +P Y + +EGP+H   FK+ V I+  +++SL  F N K AE +AA
Sbjct: 34  FKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAA 93

Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
           +VAL  +          + A+ ++    +    KN+L E + +    +P Y   K  +  
Sbjct: 94  EVALMEIVKS-------IPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGL 146

Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
            P FI  VE+ G  + G A RTKK AE+KAA+ A  A+
Sbjct: 147 AP-FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAI 183

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
357462125	372	Double-stranded RNA binding protein [Med	0.926	0.908	0.399	1e-62
357443935	424	Double-stranded RNA binding protein [Med	0.950	0.818	0.365	8e-60
224125924	240	predicted protein [Populus trichocarpa]	0.643	0.979	0.5	3e-55
242054547	448	hypothetical protein SORBIDRAFT_03g03596	0.964	0.785	0.329	2e-43
218189128	1030	hypothetical protein OsI_03907 [Oryza sa	0.643	0.228	0.443	3e-40
75251129	441	RecName: Full=Double-stranded RNA-bindin	0.643	0.532	0.443	3e-40
357443947	443	Double-stranded RNA binding protein [Med	0.652	0.537	0.379	9e-40
222619325	351	hypothetical protein OsJ_03618 [Oryza sa	0.643	0.669	0.431	2e-39
296085908	494	unnamed protein product [Vitis vinifera]	0.427	0.315	0.497	4e-38
224146035	281	predicted protein [Populus trichocarpa]	0.616	0.800	0.369	2e-37

>gi|357462125|ref|XP_003601344.1| Double-stranded RNA binding protein [Medicago truncatula] gi|355490392|gb|AES71595.1| Double-stranded RNA binding protein [Medicago truncatula]

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 157/393 (39%), Positives = 212/393 (53%), Gaps = 55/393 (13%)

Query: 1   MYKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQND 59
           M+K+K+QELCH++RWSLP+YS    DG  H+P FK SV VNGL+F SS +  SS E+QN 
Sbjct: 1   MHKSKLQELCHRRRWSLPKYSAFHVDGPPHNPSFKGSVFVNGLTFTSSDTFNSSGEAQNQ 60

Query: 60  AAKLAFLHFTSP--------------------PPPPPPNVQ----CRYKSVLQNYARRKN 95
           AA  AF +FTSP                     P   P +Q     +  +  QN AR+ +
Sbjct: 61  AAMKAFRNFTSPLSSSSKPTNEHGSKEEVKAVKPQESPVLQQSPVIKSDTDHQNCARKND 120

Query: 96  LDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQ 155
           LD P+++   EGP H   +KA V IDG +FES   F  +K+AE AAAK            
Sbjct: 121 LDQPVFTIKTEGPPHDIRYKAIVVIDGKSFESPTSFNTIKEAEQAAAKF----------- 169

Query: 156 EAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGE 215
                   V M+  D+    K++L ELS REG   P Y+T + G PHMPTF S VEV+G 
Sbjct: 170 --------VGMFQKDEPCPSKSLLQELSEREGFSKPTYKTTQIGPPHMPTFFSTVEVEGI 221

Query: 216 VFYGKAGRTKKKAEMKAAKVAYTALIE--RKLIFSLPFHGGRSCSIGSI--THTVKA--- 268
            F+GKA ++K KAE  AAK+AY  L E        L    G   ++ S   +H VK+   
Sbjct: 222 GFHGKASKSKNKAEEDAAKIAYITLKECGSHTYADLSSSIGEKQAVKSTHESHIVKSKPK 281

Query: 269 -DGVPNSTLSSDLDVTLDPNFIQKSMSVSSPVLEHGEDGKDSMAAKRATVTSSYLLCNRV 327
              VP   L  D    + P   Q +  + +  L    + K  ++  +   T+SY+L N++
Sbjct: 282 LKPVPEDELLYD---EILPTDFQVNNGIQNESLPLPPNKKMKISKAKTPNTNSYMLGNKL 338

Query: 328 RVYTRIPDIAFPKGITLMPISEDKWVAVSLEFP 360
           +VYT  PDI FP+GIT++PI EDKW+A SLEFP
Sbjct: 339 KVYTSFPDIVFPEGITVVPIGEDKWIAASLEFP 371

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443935|ref|XP_003592245.1| Double-stranded RNA binding protein [Medicago truncatula] gi|357462121|ref|XP_003601342.1| Double-stranded RNA binding protein [Medicago truncatula] gi|355481293|gb|AES62496.1| Double-stranded RNA binding protein [Medicago truncatula] gi|355490390|gb|AES71593.1| Double-stranded RNA binding protein [Medicago truncatula]

 Score =  237 bits (604), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 159/435 (36%), Positives = 222/435 (51%), Gaps = 88/435 (20%)

Query: 1   MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
           M+KTK+Q+LCHQ+RWSLP+Y+   DG  H P F +SV VNG++F SS +  S+KE+QN A
Sbjct: 1   MFKTKLQQLCHQRRWSLPKYTATNDGPQHKPSFNASVHVNGVTFASSDAFNSAKEAQNQA 60

Query: 61  AKLAFLHFTSP----------------------------------PPPPPPNVQCRY--- 83
           A  AF +FTSP                                   P P  +   R    
Sbjct: 61  AMKAFRNFTSPLSEFAIRLIRRDGFSIPTDEYGSKEKVEATKPQESPLPAQSPVIRTDTN 120

Query: 84  ---KSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHA 140
              K  LQNYAR+ NLD P+++ I+    H   +KA V ID  +FES  FF ++K+AE A
Sbjct: 121 RLSKKHLQNYARKNNLDPPVFT-IKTERLH---YKATVVIDEKSFESPTFFNSIKEAEQA 176

Query: 141 AAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGA 200
           AAK+AL  L              V ++  D+    K++L EL+ REG   P Y TI+ G+
Sbjct: 177 AAKIALRELPIS-----------VDLFQKDESCPSKSLLLELTQREGYSKPTYTTIESGS 225

Query: 201 PHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLPFHGGRSCSIG 260
            HM T+ S VEV+G  F+GKA R+KK+A++ AAK+AY AL E  L     F    +    
Sbjct: 226 LHMRTYFSTVEVEGLKFHGKASRSKKQADIDAAKIAYIALKECGLDMYADF-SSYNKENQ 284

Query: 261 SITHTVKADGVPNSTLSSDLDVTLDPNFI--------------------QKSMSVSS--- 297
           ++  T++ + V +  + +  D  LD   +                     K M +S+   
Sbjct: 285 AVQSTLEPEVVKHKQILNSEDKRLDQEKLPTDDVKVNDDMHTESLPIPPNKKMKMSNMRT 344

Query: 298 ------PVLEHGEDGKDSMAAKRATV---TSSYLLCNRVRVYTRIPDIAFPKGITLMPIS 348
                   L H E    +++    T+   TS+YLLC+R  VYT  PDI FP+ IT++P  
Sbjct: 345 SSLPKSSPLSHTELASSTISDSNMTMTCNTSNYLLCDRFNVYTNFPDILFPEDITVLPFD 404

Query: 349 EDKWVAVSLEFPNEE 363
           EDKWVA  LEFPN+E
Sbjct: 405 EDKWVAACLEFPNDE 419

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125924|ref|XP_002319709.1| predicted protein [Populus trichocarpa] gi|222858085|gb|EEE95632.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 124/248 (50%), Positives = 166/248 (66%), Gaps = 13/248 (5%)

Query: 1   MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
           MYK+K+QELC Q+ W LP Y + + G  H+PRF ++V+VN +SFHS     +SK++QNDA
Sbjct: 1   MYKSKLQELCQQRAWELPTYESSRQGQAHNPRFLATVTVNNISFHSPSPSNTSKKAQNDA 60

Query: 61  AKLAFLHFTSPPPPPPP-----NVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
           AKLA+ HF+   P P P     ++Q  +KS LQ YA+++N   P+YS  R GP H+  FK
Sbjct: 61  AKLAYEHFSISRPSPSPSPPVSDMQRLFKSQLQTYAQKRNFALPVYSCERVGPPHSSRFK 120

Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFY 175
            +VT++G TFESLE+F  L +AEHAAAK AL SL  +  +E  FL+         D   Y
Sbjct: 121 CKVTVNGQTFESLEYFSTLNKAEHAAAKAALMSLLPNGVEEVSFLFM--------DESGY 172

Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV 235
           KN+L EL+ REG  +P Y T K G  H+PTFIS VE++GE+F G+  +TKK+AEM AAK 
Sbjct: 173 KNLLQELAQREGCGLPTYSTNKSGEAHVPTFISTVEIEGEIFTGQGAKTKKQAEMSAAKT 232

Query: 236 AYTALIER 243
           AYTAL +R
Sbjct: 233 AYTALKQR 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242054547|ref|XP_002456419.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor] gi|241928394|gb|EES01539.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor]

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 150/455 (32%), Positives = 212/455 (46%), Gaps = 103/455 (22%)

Query: 1   MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHS-SVSCKSSKESQND 59
           MYK+++QELC ++RW+ P Y   ++G  H P F+++V VNG SF S     +S KE+ N 
Sbjct: 1   MYKSRLQELCQKRRWAPPVYEPTREGPAHTPLFRATVVVNGESFSSPDEGERSVKEACNL 60

Query: 60  AAKLAFLHFTS----------PPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPA 109
           AA  AF + ++           P PPPP  Q RYK+ LQ YA+++    P Y  I  G  
Sbjct: 61  AAMAAFENLSALPAEAPAPAPAPAPPPPETQLRYKNQLQEYAQKRGKLLPSYRPIHGGSL 120

Query: 110 HACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLW 169
            A  FK+ VTIDG TFES E+ + +K+AE AAAKVAL  L  +         A  +  L 
Sbjct: 121 RAPLFKSEVTIDGQTFESPEYCRTMKEAETAAAKVALMFLPQE---------AGPTQQLP 171

Query: 170 DDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAE 229
              V YKN+L E   +EG P+P Y+T    + +   FIS VE+ G  F G+ G TKK+AE
Sbjct: 172 LPSVSYKNLLQEFVQKEGFPLPTYDTTLDVSNYSAAFISTVEIQGATFRGEPGNTKKQAE 231

Query: 230 MKAAK-----------------------VAYTA------LIERKLIFSLPFHG------- 253
           M AAK                       VA T        +  KL  + P          
Sbjct: 232 MNAAKIAFQHFKDINHDAGSAGSANRLPVAATTQSLDGNTLSAKLEVNKPLLAEPSTEVD 291

Query: 254 -----GRSCSIGSITHTVKADGVPNSTLSSDLDV-----------TLDPNFIQKSMSVSS 297
                G S  I  +  T++ D +     S D++V           + +   I  S+ V  
Sbjct: 292 KLPLLGPSMDIEVMDSTLEVDKLSLPEQSIDIEVLKVDKLHSPEASTEAEVIHSSLQVDE 351

Query: 298 PV--------------LEHGE--DGKDSMAAKRATVTSS---------------YLLCNR 326
           P+              LEH    +G+ ++ A   T T S               YL  NR
Sbjct: 352 PLIPEPSTEVEGMDSSLEHTSVVNGQAALIAPTITSTLSMSTATMPVSNDSCGCYLGTNR 411

Query: 327 VRVYTRIPDIAFPKGITLMPISEDKWVAVSLEFPN 361
           ++VY R  D+  P+G T++PIS+++WVAVSL + N
Sbjct: 412 IQVYPRHTDMVIPEGATMLPISDNQWVAVSLPYSN 446

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218189128|gb|EEC71555.1| hypothetical protein OsI_03907 [Oryza sativa Indica Group]

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/248 (44%), Positives = 149/248 (60%), Gaps = 13/248 (5%)

Query: 1   MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHS-SVSCKSSKESQND 59
           MYK+++QELC Q+RW+ P Y+    G  H P F ++VSVNG+ F +   + +S+KE+ N 
Sbjct: 1   MYKSRLQELCQQRRWAPPEYTHRCAGLAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60

Query: 60  AAKLAFLHFTSPPPPPPPNV---QCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKA 116
           AAK AF H +S P PPPP     Q  YKS LQ YA++K    P Y +IREGP HA  FK+
Sbjct: 61  AAKAAFDHLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKS 120

Query: 117 RVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYK 176
            VT+DG  FES E+F  +K+AE AAAK+AL SL     QE     A  S  +    + YK
Sbjct: 121 VVTVDGKAFESPEYFHTVKEAESAAAKLALMSLP----QE-----ASSSEQVPVQPLSYK 171

Query: 177 NVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
           N+L EL+ + G  +P+Y T   G+  +P F S V      F G+   TKK+AEM AA+VA
Sbjct: 172 NLLQELAQKHGFSLPVYSTTSDGSVQVPMFKSTVVFQDGSFQGEPANTKKQAEMNAARVA 231

Query: 237 YTALIERK 244
           +    +R+
Sbjct: 232 FQHFEDRR 239

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75251129|sp|Q5N8Z0.1|DRB1_ORYSJ RecName: Full=Double-stranded RNA-binding protein 1; AltName: Full=dsRNA-binding protein 1 gi|56785214|dbj|BAD82066.1| putative dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/248 (44%), Positives = 149/248 (60%), Gaps = 13/248 (5%)

Query: 1   MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHS-SVSCKSSKESQND 59
           MYK+++QELC Q+RW+ P Y+    G  H P F ++VSVNG+ F +   + +S+KE+ N 
Sbjct: 1   MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60

Query: 60  AAKLAFLHFTSPPPPPPPNV---QCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKA 116
           AAK AF H +S P PPPP     Q  YKS LQ YA++K    P Y +IREGP HA  FK+
Sbjct: 61  AAKAAFDHLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKS 120

Query: 117 RVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYK 176
            VT+DG  FES E+F  +K+AE AAAK+AL SL     QE     A  S  +    + YK
Sbjct: 121 VVTVDGKAFESPEYFHTVKEAESAAAKLALMSLP----QE-----ASSSEQVPVQPLSYK 171

Query: 177 NVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
           N+L EL+ + G  +P+Y T   G+  +P F S V      F G+   TKK+AEM AA+VA
Sbjct: 172 NLLQELAQKHGFSLPVYSTTSDGSVQVPMFKSTVVFQDGSFQGEPANTKKQAEMNAARVA 231

Query: 237 YTALIERK 244
           +    +R+
Sbjct: 232 FQHFEDRR 239

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443947|ref|XP_003592251.1| Double-stranded RNA binding protein [Medicago truncatula] gi|357462133|ref|XP_003601348.1| Double-stranded RNA binding protein [Medicago truncatula] gi|355481299|gb|AES62502.1| Double-stranded RNA binding protein [Medicago truncatula] gi|355490396|gb|AES71599.1| Double-stranded RNA binding protein [Medicago truncatula]

 Score =  170 bits (431), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 106/279 (37%), Positives = 151/279 (54%), Gaps = 41/279 (14%)

Query: 1   MYKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQND 59
           MYK+++QE CH+++WSLP YS++  DG  H+P FK SV VNGL+F SS    SSKE+ N 
Sbjct: 33  MYKSRLQEFCHRRKWSLPEYSSIYVDGPPHNPSFKGSVFVNGLTFTSSDIFHSSKEAHNQ 92

Query: 60  AAKLAFLHFTSP-------------------PPPPPPNVQCRYKSVL-----------QN 89
           AA  A L+F+ P                     P    V  ++  +L           QN
Sbjct: 93  AAMKALLNFSYPSSSSSMPTNEYGSKEKVGAAKPQKCPVPSQFPDILSDTDRLNKLQHQN 152

Query: 90  YARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA-------- 141
           YA + NLDSP+++   EGP     + A V +DG +F+S   F   K+AE AA        
Sbjct: 153 YASKNNLDSPVFTIEAEGPPRDIRYNATVVVDGKSFKSPTSFDTRKEAEQAALQIVDMFQ 212

Query: 142 AKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAP 201
           A+ AL    C  F++     A  + ++ ++    K++L EL+ R    +P Y++ + G P
Sbjct: 213 ARSALAFKPCQTFEKP--RSALNNRHMTNETCASKSLLQELTQRRYCSIPTYKSTRTGPP 270

Query: 202 HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
           HMPTF S VEV+G  F+GKA  +KK+AE  AAK+AY AL
Sbjct: 271 HMPTFFSTVEVEGVEFHGKASSSKKEAEYDAAKIAYKAL 309

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222619325|gb|EEE55457.1| hypothetical protein OsJ_03618 [Oryza sativa Japonica Group]

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/248 (43%), Positives = 147/248 (59%), Gaps = 13/248 (5%)

Query: 1   MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHS-SVSCKSSKESQND 59
           MYK+++QELC Q+RW+ P Y+    G  H P F ++VSVNG+ F +   + +S+KE+ N 
Sbjct: 1   MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60

Query: 60  AAKLAFLHFTSPPPPPPPNV---QCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKA 116
           AAK A  H +S P PPPP     Q  YKS LQ YA++K    P Y +IREGP HA  FK+
Sbjct: 61  AAKAALDHLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKS 120

Query: 117 RVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYK 176
            VT+DG  FES E+F  +K+AE AAAK+AL SL  +         A  S  +    + YK
Sbjct: 121 VVTVDGKAFESPEYFHTVKEAESAAAKLALMSLPQE---------ASSSEQVPVQPLSYK 171

Query: 177 NVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
           N+L EL+ + G  +P+Y T   G+  +P F S V      F G+   TKK+AEM AA+VA
Sbjct: 172 NLLQELAQKHGFSLPVYSTTSDGSVQVPMFKSTVVFQDGSFQGEPANTKKQAEMNAARVA 231

Query: 237 YTALIERK 244
           +    +R+
Sbjct: 232 FQHFEDRR 239

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085908|emb|CBI31232.3| unnamed protein product [Vitis vinifera]

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 84/169 (49%), Positives = 110/169 (65%), Gaps = 13/169 (7%)

Query: 76  PPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLK 135
           P  +Q  YK+ LQ YA+++NL  P+YS    GP+H C FK++VTI+  T+ES +FF  LK
Sbjct: 152 PEGMQHLYKTQLQTYAQKRNLPLPMYSFESIGPSHNCRFKSKVTIEEQTYESPDFFPTLK 211

Query: 136 QAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYET 195
            AEHAAAK+AL SL+   FQE             DD   YKN+L E++ +EG  +P+Y T
Sbjct: 212 DAEHAAAKLALMSLSPAGFQE-------------DDYGVYKNLLQEMARKEGYQLPVYST 258

Query: 196 IKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK 244
            K G  HMPTF+S VE++GE F G+  +TKK AEM AAK AYT L ER+
Sbjct: 259 EKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLAEMNAAKAAYTHLKERR 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146035|ref|XP_002325855.1| predicted protein [Populus trichocarpa] gi|222862730|gb|EEF00237.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/292 (36%), Positives = 150/292 (51%), Gaps = 67/292 (22%)

Query: 1   MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
           MYK+K+Q+L  Q+ W +P+Y   K+G +H P F ++V+V+   F +     SSK++QN A
Sbjct: 1   MYKSKLQQLSQQRGWEIPKYEVTKEGQEHSPHFYATVTVDATLFSTPFPSSSSKKAQNAA 60

Query: 61  AKLAFLHFTSPP------------------------PPPPPNVQCR-------------- 82
           AKLA  +F+  P                        P P  N++                
Sbjct: 61  AKLAHNYFSDHPRASSSSPLNVSADCSGGSAGENTRPSPGGNLELDLQDANRTPLSNEAG 120

Query: 83  ---------------YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFES 127
                          +K+ LQ YA+++N   P+YS  R GP HA  FK +VT++G T+ES
Sbjct: 121 AVAKTDESFGGILHLFKNQLQTYAQKRNFTRPVYSCERVGPPHAIRFKCKVTVNGQTYES 180

Query: 128 LEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREG 187
            E+F  L +AE+AAAK AL SL  +  +E              D   YKN+L +++ REG
Sbjct: 181 REYFPTLSKAENAAAKAALMSLLPNGVEE--------------DESGYKNLLQDMAQREG 226

Query: 188 LPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTA 239
             +P Y T K G  H PTFIS VE+DG  F GK  R KK+AEM AAK+AYTA
Sbjct: 227 CGLPTYFTEKSGEAHAPTFISTVEIDGVNFTGKEARNKKQAEMSAAKIAYTA 278

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
TAIR|locus:2081620	355	DRB4 "double-stranded-RNA-bind	0.350	0.360	0.443	7.8e-23
TAIR|locus:2829928	359	DRB3 "dsRNA-binding protein 3"	0.372	0.378	0.415	3e-21
TAIR|locus:2057491	434	DRB2 "dsRNA-binding protein 2"	0.443	0.373	0.364	1.5e-20
TAIR|locus:2163016	393	DRB5 "dsRNA-binding protein 5"	0.416	0.386	0.360	5e-20
TAIR|locus:2024407	419	HYL1 "HYPONASTIC LEAVES 1" [Ar	0.372	0.324	0.363	4.3e-12
UNIPROTKB|Q0IQN6	424	DRB8 "Double-stranded RNA-bind	0.367	0.316	0.345	1.7e-11

TAIR|locus:2081620 DRB4 "double-stranded-RNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 63/142 (44%), Positives = 80/142 (56%)

Query:    83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
             YK  LQ YA + NL+ P+Y++ REGP HA  F+  VT  G TF+S EFF  LK AEHAAA
Sbjct:     5 YKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAAA 64

Query:   143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
             K+A+ SL      E I              V YKN+L E++ +E   +P Y T   G  H
Sbjct:    65 KIAVASLTPQS-PEGI-------------DVAYKNLLQEIAQKESSLLPFYATATSGPSH 110

Query:   203 MPTFISMVEVDGEVFYGKAGRT 224
              PTF S VE  G+VF G+  +T
Sbjct:   111 APTFTSTVEFAGKVFSGEEAKT 132

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA;IMP

GO:0060145 "viral gene silencing in virus induced gene silencing" evidence=IMP

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP

GO:0070919 "production of siRNA involved in chromatin silencing by small RNA" evidence=IMP

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2829928 DRB3 "dsRNA-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 59/142 (41%), Positives = 85/142 (59%)

Query:    83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
             YK+ LQ  A+R     P Y+  REGP HA  FKA V  +G  FES  +   L+QAEH+AA
Sbjct:     2 YKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSAA 61

Query:   143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
             +VAL +L+     ++  L A V   L + G+ YKN+L E + R GL +P+Y +++ G  H
Sbjct:    62 EVALSALSSKGPSKS--LTARV---LDETGI-YKNLLQETAHRAGLDLPVYTSVRSGPGH 115

Query:   203 MPTFISMVEVDGEVFYGKAGRT 224
             +PTF   VE+ G  F G++ +T
Sbjct:   116 IPTFSCTVELAGMSFNGESAKT 137

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2057491 DRB2 "dsRNA-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 62/170 (36%), Positives = 91/170 (53%)

Query:    83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
             YK+ LQ  A+R   + P Y+ IREGP HA  FKA V  +G  FES ++   L+QAEH+AA
Sbjct:     2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSAA 61

Query:   143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
             +VAL +L+      +  L A +   L + GV YKN+L E++ R G P+P Y T + G  H
Sbjct:    62 EVALNALSNRGPSHS--LAARI---LDETGV-YKNLLQEIAQRVGAPLPRYTTFRSGLGH 115

Query:   203 MPTFISMVEVDGEVFYGKAGRTXXXXXXXXXXXXYTAL--IERKLIFSLP 250
              P F   VE+ G  F G   +             +++L  + ++   S+P
Sbjct:   116 QPVFTGTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMP 165

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP

GO:0070919 "production of siRNA involved in chromatin silencing by small RNA" evidence=IMP

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2163016 DRB5 "dsRNA-binding protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 5.0e-20, P = 5.0e-20
 Identities = 57/158 (36%), Positives = 88/158 (55%)

Query:    83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
             YK+ LQ  A+R   + P Y+ IREGP HA  FKA V  +G  FES  +   L+QAEHAAA
Sbjct:     2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAAA 61

Query:   143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
             +V+L  L+     +++      +  L + G+ YKN+L E + R GL +P+Y +++ G+ H
Sbjct:    62 EVSLNVLSSRVPSKSL-----TAKILDETGI-YKNLLQETAHRAGLDLPMYTSVRSGSCH 115

Query:   203 MPTFISMVEVDGEVFYGKAGRTXXXXXXXXXXXXYTAL 240
              P F   VE+ G  F G++ +T            +++L
Sbjct:   116 FPGFSCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSL 153

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2024407 HYL1 "HYPONASTIC LEAVES 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 4.3e-12, P = 4.3e-12
 Identities = 52/143 (36%), Positives = 78/143 (54%)

Query:    83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
             +KS LQ YA++  L +P+Y  ++EGP+H   F++ V +DG  + SL  F N K AE +AA
Sbjct:    16 FKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAA 75

Query:   143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
             +VAL  LA     ++  L   VS  + + G+  KN+L E + +    +PLY+  K     
Sbjct:    76 EVALRELA-----KSSELSQCVSQPVHETGLC-KNLLQEYAQKMNYAIPLYQCQKVETLG 129

Query:   203 MPT-FISMVEVDGEVFYGKAGRT 224
               T F   VE+ G  + G A RT
Sbjct:   130 RVTQFTCTVEIGGIKYTGAATRT 152

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009735 "response to cytokinin stimulus" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0035279 "mRNA cleavage involved in gene silencing by miRNA" evidence=IMP

GO:0031054 "pre-miRNA processing" evidence=IMP

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA;IMP

GO:0015030 "Cajal body" evidence=IDA

GO:0035198 "miRNA binding" evidence=IDA

GO:0010445 "nuclear dicing body" evidence=IDA

GO:0051607 "defense response to virus" evidence=RCA

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010589 "leaf proximal/distal pattern formation" evidence=IMP

UNIPROTKB|Q0IQN6 DRB8 "Double-stranded RNA-binding protein 8" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 182 (69.1 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 49/142 (34%), Positives = 78/142 (54%)

Query:    83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
             +KS LQ YA++  L +P Y + +EGP+H   FK+ V I+  +++SL  F N K AE +AA
Sbjct:    34 FKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAA 93

Query:   143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
             +VAL  +      ++I   A++   + + G+  KN+L E + +    +P Y   K  +  
Sbjct:    94 EVALMEIV-----KSIPANANIPA-VQETGLC-KNLLQEYAQKMNYAIPSYICTKSASGL 146

Query:   203 MPTFISMVEVDGEVFYGKAGRT 224
              P FI  VE+ G  + G A RT
Sbjct:   147 AP-FICTVEIGGIQYIGAAART 167

GO:0003725 "double-stranded RNA binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XIII.2107.1 hypothetical protein (240 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	365
cd00048	68	cd00048, DSRM, Double-stranded RNA binding motif	1e-14
pfam00035	66	pfam00035, dsrm, Double-stranded RNA binding motif	7e-14
pfam00035	66	pfam00035, dsrm, Double-stranded RNA binding motif	1e-12
smart00358	67	smart00358, DSRM, Double-stranded RNA binding moti	3e-12
cd00048	68	cd00048, DSRM, Double-stranded RNA binding motif	4e-12
PRK00102	229	PRK00102, rnc, ribonuclease III; Reviewed	8e-12
cd00048	68	cd00048, DSRM, Double-stranded RNA binding motif	1e-10
TIGR02191	220	TIGR02191, RNaseIII, ribonuclease III, bacterial	2e-10
pfam00035	66	pfam00035, dsrm, Double-stranded RNA binding motif	7e-10
smart00358	67	smart00358, DSRM, Double-stranded RNA binding moti	1e-09
PRK00102	229	PRK00102, rnc, ribonuclease III; Reviewed	6e-09
TIGR02191	220	TIGR02191, RNaseIII, ribonuclease III, bacterial	8e-09
COG0571	235	COG0571, Rnc, dsRNA-specific ribonuclease [Transcr	5e-08
smart00358	67	smart00358, DSRM, Double-stranded RNA binding moti	1e-07
PRK00102	229	PRK00102, rnc, ribonuclease III; Reviewed	1e-07
COG0571	235	COG0571, Rnc, dsRNA-specific ribonuclease [Transcr	2e-07
TIGR02191	220	TIGR02191, RNaseIII, ribonuclease III, bacterial	2e-06
COG0571	235	COG0571, Rnc, dsRNA-specific ribonuclease [Transcr	1e-05
PRK12371	235	PRK12371, PRK12371, ribonuclease III; Reviewed	2e-05
TIGR04238	201	TIGR04238, seadorna_dsRNA, seadornavirus double-st	4e-05
PHA03103	183	PHA03103, PHA03103, double-strand RNA-binding prot	5e-04

>gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif

 Score = 67.7 bits (166), Expect = 1e-14
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 175 YKNVLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
            K++L EL+ + G P+P YE ++  G  H P F   V V G++     G +KK+A+  AA
Sbjct: 2   PKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAA 61

Query: 234 KVAYTAL 240
           + A   L
Sbjct: 62  EAALRKL 68

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. Length = 68

>gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif

 Score = 65.4 bits (160), Expect = 7e-14
 Identities = 23/66 (34%), Positives = 35/66 (53%)

Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
            K++L EL  ++G   P     + G PH PTF   V V+G+ +    G +KK+A+  AA+
Sbjct: 1   PKSLLQELCQKKGPKPPYEYVEEEGPPHSPTFTVTVTVNGKKYGTGTGSSKKEAKQLAAE 60

Query: 235 VAYTAL 240
            A   L
Sbjct: 61  KALQKL 66

Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA. Length = 66

>gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
            KS+LQ   ++K    P      EGP H+ +F   VT++G  + +     + K+A+  AA
Sbjct: 1   PKSLLQELCQKKGPKPPYEYVEEEGPPHSPTFTVTVTVNGKKYGT-GTGSSKKEAKQLAA 59

Query: 143 KVAL 146
           + AL
Sbjct: 60  EKAL 63

Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA. Length = 66

>gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif

 Score = 60.7 bits (148), Expect = 3e-12
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 175 YKNVLHELSLREGLPVPLYETIKC-GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
            K++L EL+ +  LP P YE +K  G  H P F   V+V G+      G +KK+A+ +AA
Sbjct: 1   PKSLLQELAQKRKLP-PEYELVKEEGPDHAPRFTVTVKVGGKRTGEGEGSSKKEAKQRAA 59

Query: 234 KVAYTAL 240
           + A  +L
Sbjct: 60  EAALRSL 66

Length = 67

>gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif

 Score = 60.7 bits (148), Expect = 4e-12
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 83  YKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
            KS+LQ  A+++    P Y  +  EGP HA  F   VT+ G          + K+A+  A
Sbjct: 2   PKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGG-KITGEGEGSSKKEAKQNA 60

Query: 142 AKVAL 146
           A+ AL
Sbjct: 61  AEAAL 65

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. Length = 68

>gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed

 Score = 64.0 bits (157), Expect = 8e-12
 Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 175 YKNVLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKA-GRTKKKAEMKA 232
           YK  L EL    GLP+P YE +K  G  H   F   V V+G+   G+  G +KK+AE  A
Sbjct: 160 YKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKE-LGEGTGSSKKEAEQAA 218

Query: 233 AKVAYTALIER 243
           AK A   L E+
Sbjct: 219 AKQALKKLKEK 229

Length = 229

>gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
           K+ +QEL  ++   LP Y  +++ G DH PRF   V+V G          S KE++ +A
Sbjct: 2  PKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGG-KITGEGEGSSKKEAKQNA 60

Query: 61 AKLA 64
          A+ A
Sbjct: 61 AEAA 64

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. Length = 68

>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 29/68 (42%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 175 YKNVLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKA-GRTKKKAEMKA 232
           YK  L E +   G P+P Y  IK  G  H   F   V V+GE  YG+  G++KK+AE  A
Sbjct: 154 YKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEP-YGEGKGKSKKEAEQNA 212

Query: 233 AKVAYTAL 240
           AK A   L
Sbjct: 213 AKAALEKL 220

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220

>gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif

 Score = 54.2 bits (131), Expect = 7e-10
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
           K+ +QELC +K    P     ++G  H P F  +V+VNG  +  + +  S KE++  AA
Sbjct: 1  PKSLLQELCQKKGPKPPYEYVEEEGPPHSPTFTVTVTVNGKKY-GTGTGSSKKEAKQLAA 59

Query: 62 KLA 64
          + A
Sbjct: 60 EKA 62

Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA. Length = 66

>gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 83  YKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
            KS+LQ  A+++ L  P Y  +  EGP HA  F   V + G          + K+A+  A
Sbjct: 1   PKSLLQELAQKRKLP-PEYELVKEEGPDHAPRFTVTVKVGGKRTGE-GEGSSKKEAKQRA 58

Query: 142 AKVALFSL 149
           A+ AL SL
Sbjct: 59  AEAALRSL 66

Length = 67

>gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed

 Score = 55.5 bits (135), Expect = 6e-09
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 2   YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
           YKT++QEL   +   LP Y  +K +G  HD  F   V+VNG       +  S KE++  A
Sbjct: 160 YKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNG-KELGEGTGSSKKEAEQAA 218

Query: 61  AKLA 64
           AK A
Sbjct: 219 AKQA 222

Length = 229

>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial

 Score = 54.9 bits (133), Expect = 8e-09
 Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 2   YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
           YKT +QE    +   LP Y  +K +G DHD  F   VSVNG  +      KS KE++ +A
Sbjct: 154 YKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKG-KSKKEAEQNA 212

Query: 61  AKLA 64
           AK A
Sbjct: 213 AKAA 216

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220

>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription]

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 175 YKNVLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDG-EVFYGKAGRTKKKAEMKA 232
            K  L EL   +GL +P Y  +K  G  H   F   V V G E+  GK GR+KK+AE  A
Sbjct: 163 PKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGK-GRSKKEAEQAA 221

Query: 233 AKVAYTALIERK 244
           A+ A   L  ++
Sbjct: 222 AEQALKKLGVKE 233

Length = 235

>gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
           K+ +QEL  QKR   P Y  +K +G DH PRF  +V V G          S KE++  A
Sbjct: 1  PKSLLQELA-QKRKLPPEYELVKEEGPDHAPRFTVTVKVGG-KRTGEGEGSSKKEAKQRA 58

Query: 61 AKLA 64
          A+ A
Sbjct: 59 AEAA 62

Length = 67

>gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed

 Score = 51.7 bits (125), Expect = 1e-07
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
           YK+ LQ   + + L  P Y  ++E GPAH   F   VT++G          + K+AE AA
Sbjct: 160 YKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKE-LGEGTGSSKKEAEQAA 218

Query: 142 AKVAL 146
           AK AL
Sbjct: 219 AKQAL 223

Length = 229

>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription]

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 2   YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
            KT++QEL   +   LP Y  +K +G  HD  F   V+V G     +   +S KE++  A
Sbjct: 163 PKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGG-KELGTGKGRSKKEAEQAA 221

Query: 61  AKLAF 65
           A+ A 
Sbjct: 222 AEQAL 226

Length = 235

>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 83  YKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
           YK+ LQ +A+ +    P Y  I  EGP H   F   V+++G  +   +  K+ K+AE  A
Sbjct: 154 YKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGK-GKSKKEAEQNA 212

Query: 142 AKVAL 146
           AK AL
Sbjct: 213 AKAAL 217

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220

>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription]

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 83  YKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
            K+ LQ   + + L  P Y  +  EGPAH   F   V + G    + +  ++ K+AE AA
Sbjct: 163 PKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKG-RSKKEAEQAA 221

Query: 142 AKVALFSLACDDFQ 155
           A+ AL  L   +  
Sbjct: 222 AEQALKKLGVKEPA 235

Length = 235

>gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 3   KTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
           KT++QE  H +    P Y      G DHDPRF   V V G +  +          Q  A 
Sbjct: 164 KTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAE 223

Query: 62  KL 63
           K+
Sbjct: 224 KM 225

Length = 235

>gnl|CDD|234517 TIGR04238, seadorna_dsRNA, seadornavirus double-stranded RNA-binding protein

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 176 KNVLHELSLREGLPVPLYETIKC-GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
             +L EL+++ GL +P+YE +   G  H PTF   +  +       A  +KK+AE  AA 
Sbjct: 3   VGMLQELAVKRGLELPVYEKVGKEGPDHAPTFTIKLTANDIEVIE-AASSKKQAEKLAAA 61

Query: 235 VAYTALIERKLI 246
             Y  + E  L+
Sbjct: 62  TIYEDMKENGLL 73

This protein family occurs in the seadornavirus virus group, with an N-terminal domain for binding double-stranded RNA, is designated VP12 in Banna virus, VP8 in Kadipiro virus, and VP11 in Liao ning virus. Length = 201

>gnl|CDD|222987 PHA03103, PHA03103, double-strand RNA-binding protein; Provisional

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 18/51 (35%), Positives = 26/51 (50%)

Query: 196 IKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLI 246
              G  H PTF + V + G  F    G TKK+A+  AAK+A   ++   +I
Sbjct: 131 TSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILNYVII 181

Length = 183

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
KOG3732	339	consensus Staufen and related double-stranded-RNA-	99.96
KOG3732	339	consensus Staufen and related double-stranded-RNA-	99.94
PRK12371	235	ribonuclease III; Reviewed	99.63
PHA02701	183	ORF020 dsRNA-binding PKR inhibitor; Provisional	99.63
COG0571	235	Rnc dsRNA-specific ribonuclease [Transcription]	99.62
cd00048	68	DSRM Double-stranded RNA binding motif. Binding is	99.6
PHA02701	183	ORF020 dsRNA-binding PKR inhibitor; Provisional	99.6
smart00358	67	DSRM Double-stranded RNA binding motif.	99.6
PHA03103	183	double-strand RNA-binding protein; Provisional	99.59
cd00048	68	DSRM Double-stranded RNA binding motif. Binding is	99.58
PRK14718	467	ribonuclease III; Provisional	99.58
PHA03103	183	double-strand RNA-binding protein; Provisional	99.56
PF00035	67	dsrm: Double-stranded RNA binding motif; InterPro:	99.56
PF00035	67	dsrm: Double-stranded RNA binding motif; InterPro:	99.55
smart00358	67	DSRM Double-stranded RNA binding motif.	99.55
PRK12372	413	ribonuclease III; Reviewed	99.54
PRK12371	235	ribonuclease III; Reviewed	99.53
COG0571	235	Rnc dsRNA-specific ribonuclease [Transcription]	99.46
PRK14718	467	ribonuclease III; Provisional	99.44
PRK00102	229	rnc ribonuclease III; Reviewed	99.4
PRK12372	413	ribonuclease III; Reviewed	99.39
TIGR02191	220	RNaseIII ribonuclease III, bacterial. This family	99.36
PF14709	80	DND1_DSRM: double strand RNA binding domain from D	99.35
PRK00102	229	rnc ribonuclease III; Reviewed	99.29
PF14709	80	DND1_DSRM: double strand RNA binding domain from D	99.26
TIGR02191	220	RNaseIII ribonuclease III, bacterial. This family	99.23
KOG2777	542	consensus tRNA-specific adenosine deaminase 1 [RNA	99.21
KOG2777	542	consensus tRNA-specific adenosine deaminase 1 [RNA	99.13
KOG4334	650	consensus Uncharacterized conserved protein, conta	99.09
KOG4334	650	consensus Uncharacterized conserved protein, conta	98.8
KOG1817	533	consensus Ribonuclease [RNA processing and modific	98.62
KOG1817	533	consensus Ribonuclease [RNA processing and modific	98.37
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	97.9
KOG3769	333	consensus Ribonuclease III domain proteins [Transl	97.45
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	97.2
KOG3769	333	consensus Ribonuclease III domain proteins [Transl	97.16
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	96.7
PF03368	90	Dicer_dimer: Dicer dimerisation domain; InterPro:	96.37
PF03368	90	Dicer_dimer: Dicer dimerisation domain; InterPro:	96.25
PF14954	252	LIX1: Limb expression 1	95.08
PF14954	252	LIX1: Limb expression 1	93.87
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	91.55
KOG2334	477	consensus tRNA-dihydrouridine synthase [Translatio	88.65
KOG2334	477	consensus tRNA-dihydrouridine synthase [Translatio	84.5

>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]

Probab=99.96  E-value=5.1e-28  Score=230.55  Aligned_cols=193  Identities=26%  Similarity=0.251  Sum_probs=155.8

Q ss_pred             ccCcchHHHHHHHHHHHhcCCCCCCC----CCCCc-cCcHHHHHHHHHHcCCCCCceeeec-cCCCCCcceEEEEEEcCe
Q 038761           50 CKSSKESQNDAAKLAFLHFTSPPPPP----PPNVQ-CRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSFKARVTIDGH  123 (365)
Q Consensus        50 g~SKK~Aeq~AA~~AL~~L~~~~~~~----~~~~~-~~~~s~L~E~~qk~~l~~P~Y~~~~-~Gp~h~~~F~~~v~I~g~  123 (365)
                      |.....|+|+||..+|+.|.....+-    ..... +.+++.|+|||.++++ .|.|++.+ +||.|.+.|+++|+++. 
T Consensus         2 g~t~~~a~~daaa~al~~l~~~~~~~~~~~~~~~g~KS~IS~l~E~~~r~~~-~v~fevl~eeGp~H~~~fv~rvtvg~-   79 (339)
T KOG3732|consen    2 GKTMQQAKHDAAAKALQVLQNGLISEGVMLNADPGAKSPISLLQEYGLRRGL-TPVYEVLREEGPPHMPNFVFRVTVGE-   79 (339)
T ss_pred             ccchhhhhccccccchhhccCCCcchhcccccCcccCChHHHHHHHHHHhCC-CcceeeeeccCCccCCCeEEEEEEee-
Confidence            67788999999999999987643211    11222 8899999999999998 46799884 89999999999999994 


Q ss_pred             EEEeccccccHHHHHHHHHHHHHHHhccCChhh-h---H--H-Hhh-hhc---c---cccCCCcchhhHHHHHHHhcCCC
Q 038761          124 TFESLEFFKNLKQAEHAAAKVALFSLACDDFQE-A---I--F-LYA-HVS---M---YLWDDGVFYKNVLHELSLREGLP  189 (365)
Q Consensus       124 ~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~-~---~--~-~~~-~l~---~---~~~~~~~n~ks~LqE~~qk~~~~  189 (365)
                       +.+.|.|++||.||+.||..+|..|+...+-. +   .  + .+. ...   .   .......|++++|+|+||+++|+
T Consensus        80 -~~a~GeG~sKK~AKh~AA~~~L~~lk~l~~l~~v~k~~~~~~~~~~~~~~~~q~~d~~~~~~~NPI~~L~e~~q~k~~k  158 (339)
T KOG3732|consen   80 -ITATGEGKSKKLAKHRAAEALLKELKKLPPLANVRKDSLKFAKMKSSGVKKDQPGDPEYGQVLNPIGRLQELAQAKKWK  158 (339)
T ss_pred             -eEEecCCCchhHHHHHHHHHHHHHHhcCCCccccccCcccccccccCCccccCCCCcccccccChHHHHHHHHHHhCCC
Confidence             44567899999999999999999997554211 1   0  0 000 000   0   11135789999999999999999


Q ss_pred             CCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhhccc
Q 038761          190 VPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLI  246 (365)
Q Consensus       190 ~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~~~  246 (365)
                      .|.|+++ +.|++|.++|++.|.+++. ..+|.|.|||.||++||..||..|...+++
T Consensus       159 ~P~yelv~E~G~~~~rEFv~q~sv~~~-~~~GkG~sKKiAKRnAAeamLe~l~~~~~~  215 (339)
T KOG3732|consen  159 LPEYELVQESGVPHRREFVIQCSVENF-TEEGKGPSKKIAKRNAAEAMLESLGFVKPN  215 (339)
T ss_pred             CCceEEEeccCCCccceEEEEEEecce-eeecCCchHHHHHHHHHHHHHHHhccCCCC
Confidence            9999988 8999999999999999985 579999999999999999999999977653

>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]

Probab=99.94  E-value=1.9e-26  Score=219.90  Aligned_cols=235  Identities=22%  Similarity=0.220  Sum_probs=171.1

Q ss_pred             hHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCCCCCC----
Q 038761            2 YKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPPPPP----   76 (365)
Q Consensus         2 ~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~~~~~----   76 (365)
                      ++|.|||+|.+++.. |.|++ .++||.|.+.|+++|.|.... ..| .|+|||.||+.||..+|..|...++.+.    
T Consensus        40 ~IS~l~E~~~r~~~~-v~fevl~eeGp~H~~~fv~rvtvg~~~-a~G-eG~sKK~AKh~AA~~~L~~lk~l~~l~~v~k~  116 (339)
T KOG3732|consen   40 PISLLQEYGLRRGLT-PVYEVLREEGPPHMPNFVFRVTVGEIT-ATG-EGKSKKLAKHRAAEALLKELKKLPPLANVRKD  116 (339)
T ss_pred             hHHHHHHHHHHhCCC-cceeeeeccCCccCCCeEEEEEEeeeE-Eec-CCCchhHHHHHHHHHHHHHHhcCCCccccccC
Confidence            689999999999986 59999 779999999999999999655 355 9999999999999999999987443110    


Q ss_pred             ----------------C-----CCccCcHHHHHHHHHHcCCCCCceeee-ccCCCCCcceEEEEEEcCeEEEeccccccH
Q 038761           77 ----------------P-----NVQCRYKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKNL  134 (365)
Q Consensus        77 ----------------~-----~~~~~~~s~L~E~~qk~~l~~P~Y~~~-~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sK  134 (365)
                                      +     ....||+++|+||||+++|++|.|+++ +.|.+|.+.|++.|++.+..-+  |.|.||
T Consensus       117 ~~~~~~~~~~~~~~~q~~d~~~~~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~~~~--GkG~sK  194 (339)
T KOG3732|consen  117 SLKFAKMKSSGVKKDQPGDPEYGQVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENFTEE--GKGPSK  194 (339)
T ss_pred             cccccccccCCccccCCCCcccccccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEecceeee--cCCchH
Confidence                            1     247899999999999999999999999 7799999999999999999875  589999


Q ss_pred             HHHHHHHHHHHHHHhccCChhhh---------HHHh----------------hhhc-------ccccCCCcchhhHHHHH
Q 038761          135 KQAEHAAAKVALFSLACDDFQEA---------IFLY----------------AHVS-------MYLWDDGVFYKNVLHEL  182 (365)
Q Consensus       135 K~AK~~AA~~aL~~L~~~g~~~~---------~~~~----------------~~l~-------~~~~~~~~n~ks~LqE~  182 (365)
                      |.||++||..||..|....+...         ++..                ..++       ..+.....+|...+.+.
T Consensus       195 KiAKRnAAeamLe~l~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~s~~~s~~eel~~~k~~~~~~~~~~~~~~~~~~~~~  274 (339)
T KOG3732|consen  195 KIAKRNAAEAMLESLGFVKPNKTPENLKVSLLKPASGRALGCSDKSLDNSEGEELSRLKACLKVIFNSAGLAYIKLLSEI  274 (339)
T ss_pred             HHHHHHHHHHHHHHhccCCCCcCcccccccccccccCcCCccCccccccchhhhhhhhhhhhhhcccccccccccccccc
Confidence            99999999999999963321100         0000                0000       00011234444455555


Q ss_pred             HHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCEEEe--eEeccCHHHHHHHHHHHHHHHHHhh
Q 038761          183 SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFY--GKAGRTKKKAEMKAAKVAYTALIER  243 (365)
Q Consensus       183 ~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~~~~--~G~G~SKK~Ae~~AA~~aL~~L~~~  243 (365)
                      ...+.+.. .|..... ..-...+.|.|..++...+  .|.+.|-..|+..||+.+|+.|..+
T Consensus       275 ~~e~~f~~-~y~d~~~-~t~sg~~~~~~e~s~~~~~~~~~s~~t~~~s~~~aa~~~L~yL~~~  335 (339)
T KOG3732|consen  275 APENQFTV-TYPDIEE-LTLSGQNQCLVELSTSPATVCHGSSITPPSAQSEAAHNALEYLKIM  335 (339)
T ss_pred             ccccchhe-ecchhHH-hhhhhHHHHHHHhcCCCceeeeccCCCCCcccchhHHHHHHHHHHH
Confidence            44444433 3332210 0123345555555554433  4678888999999999999999875

>PRK12371 ribonuclease III; Reviewed

Probab=99.63  E-value=7.9e-15  Score=137.53  Aligned_cols=144  Identities=20%  Similarity=0.057  Sum_probs=108.6

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhhh-HH
Q 038761           81 CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEA-IF  159 (365)
Q Consensus        81 ~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~~-~~  159 (365)
                      .+....|..+|.+.++  +.|-..  |+.-..              ..+....|-.|....|..+..+| +.|+..+ .+
T Consensus        84 lV~n~~La~ia~~lgL--~~~i~~--~~~~~~--------------~~~~~~~~ilad~~EAliGAiyl-D~G~~~a~~~  144 (235)
T PRK12371         84 LVNAETCAAIADEIGL--HDLIRT--GSDVKK--------------LTGKRLLNVRADVVEALIAAIYL-DGGLEAARPF  144 (235)
T ss_pred             HhChHHHHHHHHHCCc--HHHhcc--Ccchhh--------------cCCcccchHHHHHHHHHHHHHHH-cCCHHHHHHH
Confidence            3456778888888775  444332  332110              01233457779999999999999 6787766 33


Q ss_pred             Hhhhhc---ccccCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHH
Q 038761          160 LYAHVS---MYLWDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV  235 (365)
Q Consensus       160 ~~~~l~---~~~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~  235 (365)
                      +...+.   ........|||+.||||||+++...|.|++. +.||.|.+.|++.|.++|..++.|.|.|||+||+.||+.
T Consensus       145 i~~~~~~~~~~~~~~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~  224 (235)
T PRK12371        145 IQRYWQKRALETDAARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEK  224 (235)
T ss_pred             HHHHHHHHHhccccccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHH
Confidence            332221   1112346799999999999999999999987 789999999999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 038761          236 AYTALIER  243 (365)
Q Consensus       236 aL~~L~~~  243 (365)
                      ||+.|...
T Consensus       225 al~~~~~~  232 (235)
T PRK12371        225 MLEREGVW  232 (235)
T ss_pred             HHHHhhhh
Confidence            99998653

>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional

Probab=99.63  E-value=7.3e-16  Score=136.85  Aligned_cols=68  Identities=24%  Similarity=0.332  Sum_probs=63.4

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +|||.||||||+++..+ .|.+ ...||+|.+.|++.|.|+|..++.| .|+|||+|||+||+.||..|..
T Consensus       109 DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G-~G~SKKeAEQ~AAk~AL~~L~~  177 (183)
T PHA02701        109 NPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATA-SGCSKKLARHAACADALTILIN  177 (183)
T ss_pred             CccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEE-EeCCHHHHHHHHHHHHHHHHHh
Confidence            69999999999999888 8988 6679999999999999999999987 9999999999999999998854

>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]

Probab=99.62  E-value=1e-14  Score=136.12  Aligned_cols=146  Identities=25%  Similarity=0.215  Sum_probs=117.4

Q ss_pred             CccCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhhh-
Q 038761           79 VQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEA-  157 (365)
Q Consensus        79 ~~~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~~-  157 (365)
                      ...+....|..++...++  ..|-....|....                +|.++-+-.|..-.|..+..+| +.|++.+ 
T Consensus        80 a~lV~~~~La~ia~~l~l--~~~l~lg~ge~~~----------------gg~~~~silaD~~EAligAiyl-D~g~~~~~  140 (235)
T COG0571          80 AALVSEESLAEIARELGL--GDYLRLGKGEEKS----------------GGRRRESILADAFEALIGAIYL-DSGLEAAR  140 (235)
T ss_pred             HHHHHHHHHHHHHHHhCc--cchhhccCChhhc----------------CCCCchhHHHHHHHHHHHHHHH-hCChHHHH
Confidence            445567788888888884  5676666666543                4567788899999999999999 7777666 


Q ss_pred             HHHhhh----hcccc-cCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHH
Q 038761          158 IFLYAH----VSMYL-WDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK  231 (365)
Q Consensus       158 ~~~~~~----l~~~~-~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~  231 (365)
                      .++..+    +.+.. .....|||++||||||+++..+|.|.++ +.||.|++.|++.|.++|..++.|.|.|||+|||.
T Consensus       141 ~~i~~l~~~~~~~~~~~~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~  220 (235)
T COG0571         141 KFILKLFLPRLEEIDAGDQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQA  220 (235)
T ss_pred             HHHHHHHHHHHhhccccccccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHH
Confidence            333322    22111 2334899999999999999999999998 66999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 038761          232 AAKVAYTALIER  243 (365)
Q Consensus       232 AA~~aL~~L~~~  243 (365)
                      ||+.||..|...
T Consensus       221 AA~~al~~l~~~  232 (235)
T COG0571         221 AAEQALKKLGVK  232 (235)
T ss_pred             HHHHHHHHhccc
Confidence            999999999764

>cd00048 DSRM Double-stranded RNA binding motif

Probab=99.60  E-value=4.2e-15  Score=111.20  Aligned_cols=67  Identities=33%  Similarity=0.492  Sum_probs=62.2

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhc
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHF   68 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L   68 (365)
                      +||+.|+||||++++..|.|++ ...|++|.+.|+|.|.|+|..+++| .|.|||+|++.||+.||+.|
T Consensus         1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g-~g~sKk~Ak~~AA~~al~~L   68 (68)
T cd00048           1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEG-EGSSKKEAKQNAAEAALRKL   68 (68)
T ss_pred             ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEe-ecCCHHHHHHHHHHHHHHhC
Confidence            5899999999999999999999 6789999999999999999777776 99999999999999999875

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.

>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional

Probab=99.60  E-value=5.2e-15  Score=131.42  Aligned_cols=72  Identities=26%  Similarity=0.321  Sum_probs=67.1

Q ss_pred             CCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHh
Q 038761          170 DDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE  242 (365)
Q Consensus       170 ~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~  242 (365)
                      ....|||+.||||||+++..+ .|.++ +.||.|.+.|+++|.|+|..++.|.|.|||+|||+||+.||..|..
T Consensus       105 ~k~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~  177 (183)
T PHA02701        105 LKTLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILIN  177 (183)
T ss_pred             CCCCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence            346799999999999999988 89877 7799999999999999999999999999999999999999999965

>smart00358 DSRM Double-stranded RNA binding motif

Probab=99.60  E-value=4.3e-15  Score=111.21  Aligned_cols=66  Identities=32%  Similarity=0.473  Sum_probs=60.8

Q ss_pred             hHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcC
Q 038761            2 YKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFT   69 (365)
Q Consensus         2 ~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~   69 (365)
                      ||+.|+||||++++ .|.|++ ...|++|.+.|+|.|.|+|..++.| .|.|||+|++.||+.||+.|.
T Consensus         1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g-~g~sKk~Ak~~AA~~al~~L~   67 (67)
T smart00358        1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEG-EGSSKKEAKQRAAEAALRSLK   67 (67)
T ss_pred             CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEe-ccCCHHHHHHHHHHHHHHhcC
Confidence            68999999999999 789999 4579999999999999999988776 899999999999999999873

>PHA03103 double-strand RNA-binding protein; Provisional

Probab=99.59  E-value=3.4e-15  Score=133.39  Aligned_cols=68  Identities=28%  Similarity=0.446  Sum_probs=62.1

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +|||.||||||+++... +|.+...||+|.+.|++.|.|+|..+++| .|.|||+|||+||+.||..|..
T Consensus       110 NpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G-~G~SKKeAEQ~AAk~AL~~L~~  177 (183)
T PHA03103        110 NPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPA-IGSTKKEAKNNAAKLAMDKILN  177 (183)
T ss_pred             ChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHh
Confidence            58899999999999875 66667789999999999999999999997 9999999999999999998854

>cd00048 DSRM Double-stranded RNA binding motif

Probab=99.58  E-value=1.1e-14  Score=108.82  Aligned_cols=67  Identities=36%  Similarity=0.538  Sum_probs=62.9

Q ss_pred             chhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHH
Q 038761          174 FYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL  240 (365)
Q Consensus       174 n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L  240 (365)
                      |||+.|+||||++++..|.|++. ..|+.|.+.|.|.|.|+|..++.|.|.|||+||+.||+.||..|
T Consensus         1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L   68 (68)
T cd00048           1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL   68 (68)
T ss_pred             ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            68999999999999999999995 78889999999999999988899999999999999999999875

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.

>PRK14718 ribonuclease III; Provisional

Probab=99.58  E-value=2.5e-14  Score=142.40  Aligned_cols=145  Identities=21%  Similarity=0.165  Sum_probs=110.2

Q ss_pred             CccCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhhh-
Q 038761           79 VQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEA-  157 (365)
Q Consensus        79 ~~~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~~-  157 (365)
                      ...+....|.+++...++.  .|-+...|..                ..++..+.+-.|....|..+..|| +.|+..+ 
T Consensus        70 S~LVSnetLA~IAr~LGL~--d~Lrlg~gE~----------------~sgG~~~~sILADvFEALIGAIYL-DsG~e~a~  130 (467)
T PRK14718         70 ANLVKQQSLYEIAQALNIS--DGLRLGEGEL----------------RSGGFRRPSILADAFEAIIGAVFL-DGGFEAAQ  130 (467)
T ss_pred             HHHhhhHHHHHHHHHcCch--HHHhhCCccc----------------ccCCCCChhHHHHHHHHHHHHHHH-ccCHHHHH
Confidence            3456678888999988863  3433322211                012334667889999999999999 7888765 


Q ss_pred             HHHhh----hhccc-ccCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCE-EEeeEeccCHHHHHH
Q 038761          158 IFLYA----HVSMY-LWDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGE-VFYGKAGRTKKKAEM  230 (365)
Q Consensus       158 ~~~~~----~l~~~-~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~-~~~~G~G~SKK~Ae~  230 (365)
                      .++..    .+... ......|||+.||||||++++.+|.|.++ +.|+.|.+.|++.|.|+|. .++.|.|.|||+|||
T Consensus       131 ~fI~~ll~p~i~~~d~~~~~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ  210 (467)
T PRK14718        131 GVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQ  210 (467)
T ss_pred             HHHHHHHHHHHhhhcccccccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHH
Confidence            33322    22211 12345799999999999999999999987 7899999999999999995 458999999999999


Q ss_pred             HHHHHHHHHHHh
Q 038761          231 KAAKVAYTALIE  242 (365)
Q Consensus       231 ~AA~~aL~~L~~  242 (365)
                      .||+.||+.|..
T Consensus       211 ~AAk~AL~kL~~  222 (467)
T PRK14718        211 AAAKKALDEVTA  222 (467)
T ss_pred             HHHHHHHHHhcc
Confidence            999999999973

>PHA03103 double-strand RNA-binding protein; Provisional

Probab=99.56  E-value=1.6e-14  Score=129.02  Aligned_cols=71  Identities=27%  Similarity=0.297  Sum_probs=65.2

Q ss_pred             CCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHh
Q 038761          171 DGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE  242 (365)
Q Consensus       171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~  242 (365)
                      ...|||++||||||+++... .|.+.+.||.|.+.|+++|.|+|..+++|.|.|||+|||+||+.||..|..
T Consensus       107 K~kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~  177 (183)
T PHA03103        107 KDKNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILN  177 (183)
T ss_pred             ccCChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence            45799999999999999886 555568999999999999999999999999999999999999999999965

>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []

Probab=99.56  E-value=2.5e-14  Score=107.39  Aligned_cols=66  Identities=35%  Similarity=0.504  Sum_probs=60.3

Q ss_pred             hhhHHHHHHHhcCCCCCeEEEEeeCCCCC-CeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHH
Q 038761          175 YKNVLHELSLREGLPVPLYETIKCGAPHM-PTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL  240 (365)
Q Consensus       175 ~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~-~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L  240 (365)
                      ||+.|+|||+++++.+|.|.+...++.|. ++|.|+|.|+|..++.|.|.|||+||+.||+.||+.|
T Consensus         1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L   67 (67)
T PF00035_consen    1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL   67 (67)
T ss_dssp             HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence            68999999999999888877777776655 8999999999999999999999999999999999987

It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....

>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []

Probab=99.55  E-value=1.2e-14  Score=109.07  Aligned_cols=66  Identities=29%  Similarity=0.577  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHhcCCCCCeEEeeecCCCCC-CcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhc
Q 038761            2 YKTKVQELCHQKRWSLPRYSTMKDGADHD-PRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHF   68 (365)
Q Consensus         2 ~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~-~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L   68 (365)
                      ||+.|+|||+++++.+|.|.....|++|. +.|.|+|+|+|..++.| .|.|||+|++.||+.||+.|
T Consensus         1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g-~g~sKk~Ak~~AA~~al~~L   67 (67)
T PF00035_consen    1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEG-EGSSKKEAKQQAAKKALQKL   67 (67)
T ss_dssp             HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEe-ccCCHHHHHHHHHHHHHHhC
Confidence            79999999999999887777766666555 89999999999999876 99999999999999999876

It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....

>smart00358 DSRM Double-stranded RNA binding motif

Probab=99.55  E-value=3.4e-14  Score=106.32  Aligned_cols=65  Identities=38%  Similarity=0.566  Sum_probs=61.2

Q ss_pred             hhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHH
Q 038761          175 YKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL  240 (365)
Q Consensus       175 ~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L  240 (365)
                      ||+.|+|+||++++ .|.|++. ..|+.|.+.|.|+|.|+|..++.|.|.|||+||+.||+.||..|
T Consensus         1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L   66 (67)
T smart00358        1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL   66 (67)
T ss_pred             CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence            58999999999999 8899988 57899999999999999988899999999999999999999887

>PRK12372 ribonuclease III; Reviewed

Probab=99.54  E-value=1.3e-13  Score=136.52  Aligned_cols=145  Identities=21%  Similarity=0.183  Sum_probs=110.0

Q ss_pred             CccCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhhhH
Q 038761           79 VQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAI  158 (365)
Q Consensus        79 ~~~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~~~  158 (365)
                      ...+....|.++|...++  ..|-....|..                ..++..+.+-.|....|..+..+| +.|++.+.
T Consensus        70 S~LVsn~tLA~IA~~LgL--~~~Lrlg~ge~----------------~sgg~~~~kILADvfEALIGAIYL-DsG~e~a~  130 (413)
T PRK12372         70 ANLVKQQSLYEIAQALNI--SEGLRLGEGEL----------------RSGGFRRPSILADAFEAIIGAVFL-DGGFEAAQ  130 (413)
T ss_pred             HHHhhhHHHHHHHHHcCc--hHhhhcCcchh----------------hcCCCCCccHHHHHHHHHHHHHHH-hCCHHHHH
Confidence            345667888999998886  33333222211                112345677899999999999999 67887653


Q ss_pred             -HHh----hhhccc-ccCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCE-EEeeEeccCHHHHHH
Q 038761          159 -FLY----AHVSMY-LWDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGE-VFYGKAGRTKKKAEM  230 (365)
Q Consensus       159 -~~~----~~l~~~-~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~-~~~~G~G~SKK~Ae~  230 (365)
                       ++.    +.+... ......|||+.||||||++++..|.|+++ +.|+.|.+.|++.|.|+|. .++.|.|.|||+|||
T Consensus       131 ~fV~~ll~p~l~~~~~~~~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ  210 (413)
T PRK12372        131 GVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQ  210 (413)
T ss_pred             HHHHHHHHHHHhhcccccccCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHH
Confidence             222    222221 12245799999999999999999999987 7899999999999999985 457999999999999


Q ss_pred             HHHHHHHHHHHh
Q 038761          231 KAAKVAYTALIE  242 (365)
Q Consensus       231 ~AA~~aL~~L~~  242 (365)
                      .||+.||+.|..
T Consensus       211 ~AAr~AL~kL~~  222 (413)
T PRK12372        211 AAAKKALDEVMA  222 (413)
T ss_pred             HHHHHHHHHHhc
Confidence            999999999984

>PRK12371 ribonuclease III; Reviewed

Probab=99.53  E-value=2.3e-14  Score=134.34  Aligned_cols=69  Identities=29%  Similarity=0.401  Sum_probs=64.7

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +||+.||||||++++..|.|++ .+.||+|.+.|+|+|+|+|..+++| .|+|||+||++||+.||..|..
T Consensus       162 d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g-~G~sKK~Ae~~AA~~al~~~~~  231 (235)
T PRK12371        162 DAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETG-EGRSKRAAEQVAAEKMLEREGV  231 (235)
T ss_pred             CHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHhhh
Confidence            6899999999999988999999 6789999999999999999999886 9999999999999999998864

>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]

Probab=99.46  E-value=1.5e-13  Score=128.32  Aligned_cols=70  Identities=30%  Similarity=0.440  Sum_probs=65.9

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP   71 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~   71 (365)
                      +||+.||||||+++..+|.|++ .+.||+|++.|++.|.|+|..++.| .|+|||+|||.||+.||..|...
T Consensus       162 D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G-~G~skk~AEq~AA~~al~~l~~~  232 (235)
T COG0571         162 DPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTG-KGRSKKEAEQAAAEQALKKLGVK  232 (235)
T ss_pred             ChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEe-cccCHHHHHHHHHHHHHHHhccc
Confidence            5899999999999999999999 6679999999999999999999897 99999999999999999998753

>PRK14718 ribonuclease III; Provisional

Probab=99.44  E-value=2e-13  Score=136.01  Aligned_cols=70  Identities=30%  Similarity=0.378  Sum_probs=64.3

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEE-eecccccCcchHHHHHHHHHHHhcCCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSF-HSSVSCKSSKESQNDAAKLAFLHFTSP   71 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~-~~gg~g~SKK~Aeq~AA~~AL~~L~~~   71 (365)
                      +||+.||||||++++.+|.|++ .+.||+|.+.|++.|+|+|..+ +.| .|.|||+|||.||+.||+.|...
T Consensus       152 DyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G-~G~SKKeAEQ~AAk~AL~kL~~~  223 (467)
T PRK14718        152 DAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSG-SGASRRAAEQAAAKKALDEVTAV  223 (467)
T ss_pred             CHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEE-EcCCHHHHHHHHHHHHHHHhccc
Confidence            6899999999999999999999 6789999999999999999644 676 99999999999999999999853

>PRK00102 rnc ribonuclease III; Reviewed

Probab=99.40  E-value=4.5e-12  Score=117.98  Aligned_cols=142  Identities=30%  Similarity=0.301  Sum_probs=105.5

Q ss_pred             CcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhhh-HHH
Q 038761           82 RYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEA-IFL  160 (365)
Q Consensus        82 ~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~~-~~~  160 (365)
                      .....|..++.+.++  ..|-..  ++...             . ..+..+.|-.|....|..+..+| +.|+..+ .++
T Consensus        80 vsn~~la~~a~~lgl--~~~i~~--~~~~~-------------~-~~~~~~~k~~ad~~EA~iGAiyl-d~g~~~~~~~i  140 (229)
T PRK00102         80 VREESLAEIARELGL--GEYLLL--GKGEE-------------K-SGGRRRPSILADAFEALIGAIYL-DQGLEAARKFI  140 (229)
T ss_pred             hCHHHHHHHHHHCCc--HHHHcc--CcHHH-------------H-cCCCCCccHHHHHHHHHHHHHHH-hCCHHHHHHHH
Confidence            445677888888775  333222  22110             0 01123456789999999999998 5677655 232


Q ss_pred             h----hhhccc-ccCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHH
Q 038761          161 Y----AHVSMY-LWDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK  234 (365)
Q Consensus       161 ~----~~l~~~-~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~  234 (365)
                      .    +.+... ......|||+.|+||||+.++..|.|.++ +.|+.|.+.|+|.|.++|..++.|.|.|||+||+.||+
T Consensus       141 ~~~~~~~l~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~  220 (229)
T PRK00102        141 LRLFEPRIEEIDLGDLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAK  220 (229)
T ss_pred             HHHHHHHHHhhccccccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHH
Confidence            2    222211 12456799999999999999999999987 67999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 038761          235 VAYTALIE  242 (365)
Q Consensus       235 ~aL~~L~~  242 (365)
                      .||+.|+.
T Consensus       221 ~Al~~l~~  228 (229)
T PRK00102        221 QALKKLKE  228 (229)
T ss_pred             HHHHHHhh
Confidence            99999975

>PRK12372 ribonuclease III; Reviewed

Probab=99.39  E-value=7e-13  Score=131.37  Aligned_cols=69  Identities=29%  Similarity=0.357  Sum_probs=63.7

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEE-EeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLS-FHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~-~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +||+.||||||++++.+|.|++ .+.||+|++.|+|.|+|+|.. ++.| .|.|||+|||+||+.||+.|..
T Consensus       152 D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G-~G~SKKeAEQ~AAr~AL~kL~~  222 (413)
T PRK12372        152 DAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSG-SGASRRAAEQAAAKKALDEVMA  222 (413)
T ss_pred             CHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEE-EeCCHHHHHHHHHHHHHHHHhc
Confidence            5899999999999999999998 678999999999999999964 4565 9999999999999999999985

>TIGR02191 RNaseIII ribonuclease III, bacterial

Probab=99.36  E-value=7e-12  Score=115.87  Aligned_cols=140  Identities=26%  Similarity=0.280  Sum_probs=104.1

Q ss_pred             CcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhhhH-HH
Q 038761           82 RYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAI-FL  160 (365)
Q Consensus        82 ~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~~~-~~  160 (365)
                      .....|..++.+.++  +.|-.  .++....              ..+....|-.|.--.|..+..+| +.|++.+. ++
T Consensus        74 vsn~~la~~a~~~gl--~~~i~--~~~~~~~--------------~~~~~~~k~~ad~~eAliGAiyl-d~g~~~~~~~i  134 (220)
T TIGR02191        74 VSEESLAEVARELGL--GKFLL--LGKGEEK--------------SGGRRRESILADAFEALIGAIYL-DSGLEAARKFI  134 (220)
T ss_pred             hCHHHHHHHHHHCCc--HHHhc--cCchHhh--------------cCCcccchHHHHHHHHHHHHHHH-hCCHHHHHHHH
Confidence            346677888888775  33322  2221100              01234567789999999999999 67776652 32


Q ss_pred             ----hhhhccc-ccCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHH
Q 038761          161 ----YAHVSMY-LWDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK  234 (365)
Q Consensus       161 ----~~~l~~~-~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~  234 (365)
                          .+.+... ......|||+.|+|+||++++..|.|++. +.|+.|.+.|+|.|.++|..++.|.|.|||+||++||+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~  214 (220)
T TIGR02191       135 LKLLIPRIDAIEKEETLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAK  214 (220)
T ss_pred             HHHHHHHHHhhhcccccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHH
Confidence                2322211 12357899999999999999999999987 66889999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 038761          235 VAYTAL  240 (365)
Q Consensus       235 ~aL~~L  240 (365)
                      .||+.|
T Consensus       215 ~Al~~l  220 (220)
T TIGR02191       215 AALEKL  220 (220)
T ss_pred             HHHHhC
Confidence            999875

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.

>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1

Probab=99.35  E-value=2.1e-12  Score=101.37  Aligned_cols=68  Identities=26%  Similarity=0.520  Sum_probs=60.4

Q ss_pred             hHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEe---------ecccccCcchHHHHHHHHHHHhcC
Q 038761            2 YKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFH---------SSVSCKSSKESQNDAAKLAFLHFT   69 (365)
Q Consensus         2 ~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~---------~gg~g~SKK~Aeq~AA~~AL~~L~   69 (365)
                      +++.|+|+|+|++|..|.|++ ...||+|.+.|.+.|.|++..+.         .+.--.+||+|+..||+.+|..|+
T Consensus         3 a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg   80 (80)
T PF14709_consen    3 AVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG   80 (80)
T ss_pred             HHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence            689999999999999999999 67899999999999999988873         112478999999999999999874

>PRK00102 rnc ribonuclease III; Reviewed

Probab=99.29  E-value=8e-12  Score=116.34  Aligned_cols=69  Identities=35%  Similarity=0.539  Sum_probs=64.2

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +||+.|+||||++++..|.|++ ...|+.|.+.|+|.|+++|..+++| .|.|||+||++||+.||+.|..
T Consensus       159 ~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g-~g~skk~Ae~~AA~~Al~~l~~  228 (229)
T PRK00102        159 DYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEG-TGSSKKEAEQAAAKQALKKLKE  228 (229)
T ss_pred             CHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHhh
Confidence            5899999999999999999998 6689999999999999999999886 9999999999999999998853

>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1

Probab=99.26  E-value=1.3e-11  Score=96.86  Aligned_cols=68  Identities=31%  Similarity=0.374  Sum_probs=59.7

Q ss_pred             chhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEe----------eEeccCHHHHHHHHHHHHHHHHH
Q 038761          174 FYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFY----------GKAGRTKKKAEMKAAKVAYTALI  241 (365)
Q Consensus       174 n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~----------~G~G~SKK~Ae~~AA~~aL~~L~  241 (365)
                      ++++.|+|+|++++|..|.|++. +.||.|...|.+.|+|.+..+.          .-...+||+|+..||+.||+.|+
T Consensus         2 ~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg   80 (80)
T PF14709_consen    2 SAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG   80 (80)
T ss_pred             CHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence            67899999999999999999997 7899999999999999876542          12358899999999999999874

>TIGR02191 RNaseIII ribonuclease III, bacterial

Probab=99.23  E-value=2.4e-11  Score=112.31  Aligned_cols=67  Identities=39%  Similarity=0.574  Sum_probs=62.2

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhc
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHF   68 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L   68 (365)
                      +||+.|+||||++++..|.|++ ...|++|.+.|.|.|+++|..++.| .|.|||+|+++||+.||+.|
T Consensus       153 ~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g-~g~skk~A~~~AA~~Al~~l  220 (220)
T TIGR02191       153 DYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEG-KGKSKKEAEQNAAKAALEKL  220 (220)
T ss_pred             ChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHhC
Confidence            5899999999999998899999 4679999999999999999999887 89999999999999999875

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.

>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]

Probab=99.21  E-value=4.4e-11  Score=122.06  Aligned_cols=123  Identities=31%  Similarity=0.366  Sum_probs=104.4

Q ss_pred             CeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCCCCC------C--------------
Q 038761           18 PRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPPPP------P--------------   76 (365)
Q Consensus        18 P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~~~~------~--------------   76 (365)
                      +.|.. .+.||.|.+.|.+.|.|+|..+.       ||.|++.||+.|++.+.+.+..-      .              
T Consensus        10 ~~~~~~~q~~p~~~p~~~~~~~v~~~~~~-------~k~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (542)
T KOG2777|consen   10 LQYNLVSQTGPVHAPLFPFSVEVNGQEFP-------KKKAKQRAAEKALRVFLQFPEAHLSMGGTEGVNEDLTSDQADAF   82 (542)
T ss_pred             cccccccccCCCCCCcccceEEecccccc-------cccccchhhhHHHHHHhhcCCcccccCCCCccccccchhhhHHH
Confidence            67887 77899999999999999999863       99999999999999988754210      0              


Q ss_pred             ---CCCccCcHHHHHHHHHHcCCCCCceeee-ccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccC
Q 038761           77 ---PNVQCRYKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACD  152 (365)
Q Consensus        77 ---~~~~~~~~s~L~E~~qk~~l~~P~Y~~~-~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~  152 (365)
                         ....++|++.|+|+++     -+.|.+. ..|+.|.+.|.|.|.|+|+.|++ + |+|||+||+.||+.||+.|...
T Consensus        83 ~~~~~~~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~-~-~~sKk~ak~~aa~~al~~l~~~  155 (542)
T KOG2777|consen   83 LSLGKEGKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEG-G-GRSKKEAKQEAAMAALQVLFKI  155 (542)
T ss_pred             HhhhhccCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEccC-C-CcchHHHHHHHHHHHHHHHHhc
Confidence               1347899999999998     3557666 77999999999999999999986 4 9999999999999999999765


Q ss_pred             Ch
Q 038761          153 DF  154 (365)
Q Consensus       153 g~  154 (365)
                      ..
T Consensus       156 ~~  157 (542)
T KOG2777|consen  156 DE  157 (542)
T ss_pred             cC
Confidence            43

>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]

Probab=99.13  E-value=2.1e-10  Score=117.10  Aligned_cols=135  Identities=30%  Similarity=0.372  Sum_probs=105.9

Q ss_pred             Cceeee-ccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhhhHHHh-----hhhc-----c-
Q 038761           99 PLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLY-----AHVS-----M-  166 (365)
Q Consensus        99 P~Y~~~-~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~~~~~~-----~~l~-----~-  166 (365)
                      +.|..+ +.||.|.+.|.+.|+|+|..|.       ||-|+..||+.|+..+.+.+.....+..     ..+.     + 
T Consensus        10 ~~~~~~~q~~p~~~p~~~~~~~v~~~~~~-------~k~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (542)
T KOG2777|consen   10 LQYNLVSQTGPVHAPLFPFSVEVNGQEFP-------KKKAKQRAAEKALRVFLQFPEAHLSMGGTEGVNEDLTSDQADAF   82 (542)
T ss_pred             cccccccccCCCCCCcccceEEecccccc-------cccccchhhhHHHHHHhhcCCcccccCCCCccccccchhhhHHH
Confidence            456544 7899999999999999999984       9999999999999988654321110000     0000     0 


Q ss_pred             -cccCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhhc
Q 038761          167 -YLWDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK  244 (365)
Q Consensus       167 -~~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~  244 (365)
                       .......|+++.|+|+++     .+.|.+. +.|+.|.+.|.+.|+|+|+.|..| |.|||+|+++||+.||+.|....
T Consensus        83 ~~~~~~~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~  156 (542)
T KOG2777|consen   83 LSLGKEGKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKID  156 (542)
T ss_pred             HhhhhccCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhcc
Confidence             011237899999999998     5688877 889999999999999999998777 99999999999999999998764


Q ss_pred             cc
Q 038761          245 LI  246 (365)
Q Consensus       245 ~~  246 (365)
                      -+
T Consensus       157 ~~  158 (542)
T KOG2777|consen  157 EN  158 (542)
T ss_pred             CC
Confidence            44

>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]

Probab=99.09  E-value=4.6e-10  Score=111.82  Aligned_cols=176  Identities=17%  Similarity=0.100  Sum_probs=124.0

Q ss_pred             CCccCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCC----
Q 038761           78 NVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDD----  153 (365)
Q Consensus        78 ~~~~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g----  153 (365)
                      .+.+..++.|+||+|+-.-.+|.|++..... .+..|...|.+++..|++ |+|.|||.||..||+.+|..|...-    
T Consensus       372 pngks~vCiLhEy~q~~lk~~pvyef~e~~n-~stpysa~v~~d~~~yGs-G~g~sKK~Ak~~AAR~tLeiLIPd~~~~~  449 (650)
T KOG4334|consen  372 PNGKSKVCILHEYAQQCLKSLPVYEFAENDN-NSTPYSAGVLPDLFPYGS-GVGASKKTAKLVAARDTLEILIPDLRVSE  449 (650)
T ss_pred             CCCceeeehHHHHHHHHhhhcceeehhhccC-CCCccccccccccccccc-ccccchHHHHHHHHHHHHHHhcchhhhcc
Confidence            4667789999999999887889998874332 345799999999999875 6899999999999999999985221    


Q ss_pred             -------hhhh----HH--Hhhhhccc--------ccCCCcchhhHHHHHHHhcC-CCCCeEEEEe-eCCCCCCeEEEEE
Q 038761          154 -------FQEA----IF--LYAHVSMY--------LWDDGVFYKNVLHELSLREG-LPVPLYETIK-CGAPHMPTFISMV  210 (365)
Q Consensus       154 -------~~~~----~~--~~~~l~~~--------~~~~~~n~ks~LqE~~qk~~-~~~P~Y~~~~-~Gp~h~~~F~~~V  210 (365)
                             ..+.    .+  ++.++...        ..-....+-+.|.++.+++. |.--....+. .+.+...+|++.|
T Consensus       450 ~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d~~ik~E~i~~~nqkse~im~~  529 (650)
T KOG4334|consen  450 DNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWNDLVIKKEMIGNGNQKSEVIMIL  529 (650)
T ss_pred             cccccccccccccchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcceeeeeeccCCCCccceeEeee
Confidence                   0000    01  11222100        00123456678888887754 4211222221 1224556787777


Q ss_pred             EECCEEEeeEeccCHHHHHHHHHHHHHHHHHhhcccCCCC--CCCCccee
Q 038761          211 EVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLP--FHGGRSCS  258 (365)
Q Consensus       211 ~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~~~~~~p--~~~~~~~s  258 (365)
                         |+...+|+.++|++++|.|.+..|+.|.-.-+.|+|.  ++|.++++
T Consensus       530 ---Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~twGSlLriYGr~sik  576 (650)
T KOG4334|consen  530 ---GKHTEEAECKNKRQGKQLASQRILQKLHPHLLTWGSLLRIYGRLSIK  576 (650)
T ss_pred             ---ccceeeeeeechhHHHHHHHHHHHHHhCHHhhhHHHHHHHhhhhhhH
Confidence               7788899999999999999999999999999999995  47777654

>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]

Probab=98.80  E-value=2.7e-08  Score=99.37  Aligned_cols=144  Identities=17%  Similarity=0.147  Sum_probs=98.1

Q ss_pred             hHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCC--C------
Q 038761            2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPP--P------   73 (365)
Q Consensus         2 ~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~--~------   73 (365)
                      ..-.|+||+|.....+|.|++.+.. .....|...|.+|+..||+| .|.|||.|+..||+.+|..|.-..  +      
T Consensus       377 ~vCiLhEy~q~~lk~~pvyef~e~~-n~stpysa~v~~d~~~yGsG-~g~sKK~Ak~~AAR~tLeiLIPd~~~~~~n~~d  454 (650)
T KOG4334|consen  377 KVCILHEYAQQCLKSLPVYEFAEND-NNSTPYSAGVLPDLFPYGSG-VGASKKTAKLVAARDTLEILIPDLRVSEDNVCD  454 (650)
T ss_pred             eeehHHHHHHHHhhhcceeehhhcc-CCCCcccccccccccccccc-cccchHHHHHHHHHHHHHHhcchhhhccccccc
Confidence            3457999999999999999984432 34567999999999999997 999999999999999999986421  0      


Q ss_pred             --C----CC--------------C--------CCccCcHHHHHHHHHHc-CCCCCceeeeccCCCCCcceEEEEEEcCeE
Q 038761           74 --P----PP--------------P--------NVQCRYKSVLQNYARRK-NLDSPLYSSIREGPAHACSFKARVTIDGHT  124 (365)
Q Consensus        74 --~----~~--------------~--------~~~~~~~s~L~E~~qk~-~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~  124 (365)
                        +    ..              |        .....|-.+|.+..+++ ||.-........|..++ .-.+.+.++.+.
T Consensus       455 ~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d~~ik~E~i~~~nq-kse~im~~Gkht  533 (650)
T KOG4334|consen  455 GKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWNDLVIKKEMIGNGNQ-KSEVIMILGKHT  533 (650)
T ss_pred             ccccccccchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcceeeeeeccCCCCc-cceeEeeeccce
Confidence              0    00              0        12334556666555544 23111111111122222 234555666666


Q ss_pred             EEeccccccHHHHHHHHHHHHHHHhc
Q 038761          125 FESLEFFKNLKQAEHAAAKVALFSLA  150 (365)
Q Consensus       125 ~~~~g~g~sKK~AK~~AA~~aL~~L~  150 (365)
                      ..  +.+++|+.+||.|.+..|+.|.
T Consensus       534 ~~--~~cknkr~gkQlASQ~ilq~lH  557 (650)
T KOG4334|consen  534 EE--AECKNKRQGKQLASQRILQKLH  557 (650)
T ss_pred             ee--eeeechhHHHHHHHHHHHHHhC
Confidence            54  4789999999999999999993

>KOG1817 consensus Ribonuclease [RNA processing and modification]

Probab=98.62  E-value=2.7e-07  Score=91.46  Aligned_cols=112  Identities=21%  Similarity=0.234  Sum_probs=92.8

Q ss_pred             ccccHHHHHHHHHHHHHHHhccCChhhh-HHH----hhhhcccc-cCCCcchhhHHHHHHHhcCC------CCCeEEEE-
Q 038761          130 FFKNLKQAEHAAAKVALFSLACDDFQEA-IFL----YAHVSMYL-WDDGVFYKNVLHELSLREGL------PVPLYETI-  196 (365)
Q Consensus       130 ~g~sKK~AK~~AA~~aL~~L~~~g~~~~-~~~----~~~l~~~~-~~~~~n~ks~LqE~~qk~~~------~~P~Y~~~-  196 (365)
                      .++.|-.|..-.|..+..++ +.++..+ +|+    .|.+...+ .....++|+.|+.+|.....      .+|.|.+. 
T Consensus       379 ~lk~K~~ADlfEAfiGaLyv-D~~le~~~qf~~~l~~Prl~~fi~nq~wndpkskLqq~cl~~rys~~~epdip~y~V~~  457 (533)
T KOG1817|consen  379 NLKLKDYADLFEAFIGALYV-DKGLEYCRQFLRVLFFPRLKEFIRNQDWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLG  457 (533)
T ss_pred             hhhHHHHHHHHHHHHHHHhh-cCCcHHHHHHHHHHhhHHHHHHHHhhhccCcHHHHHHHHHHHhcccCCCCCCceEEEec
Confidence            58899999999999999998 5666555 342    23333322 24678999999999988653      48888887 


Q ss_pred             eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHh
Q 038761          197 KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE  242 (365)
Q Consensus       197 ~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~  242 (365)
                      ..||.+.+.|++.|.++|+.+++|+|.|-|+|+..||+.||+.+..
T Consensus       458 ~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~~~  503 (533)
T KOG1817|consen  458 AKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENLKM  503 (533)
T ss_pred             ccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHHHh
Confidence            7889999999999999999999999999999999999999999975

>KOG1817 consensus Ribonuclease [RNA processing and modification]

Probab=98.37  E-value=8.7e-07  Score=87.88  Aligned_cols=69  Identities=25%  Similarity=0.361  Sum_probs=63.3

Q ss_pred             ChHHHHHHHHHhcCCC------CCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWS------LPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~------~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      ++|++||.||-.++.+      +|.|.+ ...||.+.+.|.+.|+++|+.+++| .|+|-|.|+..||++||+.+..
T Consensus       428 dpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~-~G~nik~Ae~rAA~~ALe~~~~  503 (533)
T KOG1817|consen  428 DPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATG-VGSNIKQAEMRAAMQALENLKM  503 (533)
T ss_pred             CcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeec-cCchHhHHHHHHHHHHHHHHHh
Confidence            4899999999998765      788988 6789999999999999999999997 9999999999999999998874

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=97.90  E-value=2.3e-05  Score=84.03  Aligned_cols=220  Identities=15%  Similarity=0.130  Sum_probs=135.9

Q ss_pred             hHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCCCC------C
Q 038761            2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPPP------P   75 (365)
Q Consensus         2 ~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~~~------~   75 (365)
                      -|..|..||-|++.. |.|.+..+|+....+|.|.|.+.+..+..-+...+||.|+.+||+...+.|......      .
T Consensus         3 ~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~d~p~   81 (1282)
T KOG0921|consen    3 VKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQSDIPT   81 (1282)
T ss_pred             HHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhccccccCCcc
Confidence            478999999999988 899998889999999999999999887543467779999999999999998764311      0


Q ss_pred             -CCCCccCcHHHHHHHHHHcCCCCCceeee-ccCCCCCcceEEEEEEcCeEEEecccccc----HHHHHHHHHHHHHHHh
Q 038761           76 -PPNVQCRYKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKN----LKQAEHAAAKVALFSL  149 (365)
Q Consensus        76 -~~~~~~~~~s~L~E~~qk~~l~~P~Y~~~-~~Gp~h~~~F~~~v~I~g~~~~~~g~g~s----KK~AK~~AA~~aL~~L  149 (365)
                       .+.....+ +-|+..-.......|.+-+. ..++...+.  .+.-..+..+... .|..    -..|+..++..+..+ 
T Consensus        82 ~~s~s~~~~-~~l~~~~~a~~~~~~~~g~~~q~~~qd~p~--~~~p~~~d~~~~~-~g~~~~~~~qkae~~~e~ea~d~-  156 (1282)
T KOG0921|consen   82 LTSSSLEAS-STWQDSETATMFCGGEDGNSFQESQQPIPQ--KRFPWSNNAYQRN-EGTHEQYITQKAEEIAESETVDL-  156 (1282)
T ss_pred             cccccccCc-ccccccccccccccccccccCCCCCCCccc--ccccccccccccC-CCCCchhHHHHhhhhhhhhhhcc-
Confidence             01122223 33332221111112221111 111111110  0111112222111 1111    111222222211111 


Q ss_pred             ccCChhhhHHHhhhhccccc--CCCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEE-----CCEEEeeEec
Q 038761          150 ACDDFQEAIFLYAHVSMYLW--DDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEV-----DGEVFYGKAG  222 (365)
Q Consensus       150 ~~~g~~~~~~~~~~l~~~~~--~~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i-----~g~~~~~G~G  222 (365)
                                     ...++  ....|.|..|+++-|++.. ...|+....|+.|.+.|+.+..+     +-...+.+.|
T Consensus       157 ---------------~~~ihg~wt~eN~K~~ln~~~q~~~~-~~~y~~~~~g~~~~~s~~~e~si~v~~~~~~~~~~~~g  220 (1282)
T KOG0921|consen  157 ---------------NAEIHGNWTMENAKKALNEYLQKMRI-QDNYKYTIVGPEHVRSFEAEASIYVPQLNRNLVAKETG  220 (1282)
T ss_pred             ---------------CccccCCCCcchhHHHHhHHHhhhhh-ccccceeecCCccccchhhhHHHhhhhhchhhhhhhcc
Confidence                           11112  2456889999999999999 44899999999999999988655     2233466889


Q ss_pred             cCHHHHHHHHHHHHHHHHHhh
Q 038761          223 RTKKKAEMKAAKVAYTALIER  243 (365)
Q Consensus       223 ~SKK~Ae~~AA~~aL~~L~~~  243 (365)
                      .+||.|+...|...+.+|.+.
T Consensus       221 snkk~~~~~ca~s~vrqm~hl  241 (1282)
T KOG0921|consen  221 SNKKVAEASCALSLVRQLFHL  241 (1282)
T ss_pred             ccceecCcchHHHHHHHHHHH
Confidence            999999999999999998653

>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]

Probab=97.45  E-value=0.00014  Score=69.49  Aligned_cols=80  Identities=21%  Similarity=0.236  Sum_probs=70.6

Q ss_pred             CcchhhHHHHHHHhcCCCCCeEEEE-eeCC-CCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhhcccCCC
Q 038761          172 GVFYKNVLHELSLREGLPVPLYETI-KCGA-PHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSL  249 (365)
Q Consensus       172 ~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp-~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~~~~~~  249 (365)
                      ..+|...|-++|++++...|++.+. +.|- ...+.|++-+.-|.+.+|.|.|.|-|.|++.||+.||..+-+..+....
T Consensus       231 l~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~~tp~~~~  310 (333)
T KOG3769|consen  231 LQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYDHTPERQR  310 (333)
T ss_pred             ccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHcCChhhcC
Confidence            4689999999999999999999988 7775 4688999999999989999999999999999999999999887655555


Q ss_pred             CC
Q 038761          250 PF  251 (365)
Q Consensus       250 p~  251 (365)
                      |+
T Consensus       311 p~  312 (333)
T KOG3769|consen  311 PP  312 (333)
T ss_pred             CC
Confidence            54

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=97.20  E-value=0.00055  Score=71.90  Aligned_cols=123  Identities=22%  Similarity=0.202  Sum_probs=93.0

Q ss_pred             eEE------e-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCC--------------C----
Q 038761           19 RYS------T-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPP--------------P----   73 (365)
Q Consensus        19 ~Y~------~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~--------------~----   73 (365)
                      .|+      + ...||.|.++|+++|.+||..+..  .|.|||.|+..||++-|+....+-              +    
T Consensus       387 QYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~~a--~gps~~~~~wh~~~k~lq~~~~p~ga~~r~~~~ge~~a~~p~~  464 (816)
T KOG3792|consen  387 QYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPAEA--EGPSKKTAKWHAARKRLQNEGRPTGAAQRFGRMGEDPASMPEP  464 (816)
T ss_pred             eeccccCCCceeccCCcccchhhhhhhhcCCcccc--CCcccccchHHHHHHHhhccCCCccccccccccCCCcccCCCC
Confidence            777      5 678999999999999999999843  799999999999999998874310              0    


Q ss_pred             ------CCC------------C----------------CCccCcHHHHHHHHHHcCCCCCceeee-ccC-CCCCcceEEE
Q 038761           74 ------PPP------------P----------------NVQCRYKSVLQNYARRKNLDSPLYSSI-REG-PAHACSFKAR  117 (365)
Q Consensus        74 ------~~~------------~----------------~~~~~~~s~L~E~~qk~~l~~P~Y~~~-~~G-p~h~~~F~~~  117 (365)
                            +.+            |                ...+++...|+|-  .++   -.|++. +.| -.|.++|...
T Consensus       465 ~~r~~as~ddr~a~~~~a~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~Ek--~rg---~k~El~set~~gs~~~R~v~g  539 (816)
T KOG3792|consen  465 KGRRPASVDDRHANEKHAGIYPTEEELENVQRQVSHLERALKLVSDELAEK--RRG---DKYELPSETGTGSHDKRFVKG  539 (816)
T ss_pred             CCcccCCCcchhhhccccccCccHHHHHHHHHhhhHHHHhhcchhHHHhhh--ccc---cceecccccCCCCCCceeeee
Confidence                  000            0                1234445555553  222   246666 344 6799999999


Q ss_pred             EEEcCeEEEeccccccHHHHHHHHHHHHHHHhc
Q 038761          118 VTIDGHTFESLEFFKNLKQAEHAAAKVALFSLA  150 (365)
Q Consensus       118 v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~  150 (365)
                      |.+.|+.|.  |.+.+++.|+..|+..++.-+.
T Consensus       540 V~rvG~~ak--G~~~~gd~a~~~a~Lca~~pt~  570 (816)
T KOG3792|consen  540 VMRVGILAK--GLLLNGDRAVELALLCAEKPTS  570 (816)
T ss_pred             eeeeehhhc--cccccchHHHHHHHHhccCccc
Confidence            999999995  5799999999999999988764

>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]

Probab=97.16  E-value=0.00045  Score=66.09  Aligned_cols=68  Identities=15%  Similarity=0.253  Sum_probs=60.8

Q ss_pred             hHHHHHHHHHhcCCCCCeEEe-eecC-CCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            2 YKTKVQELCHQKRWSLPRYST-MKDG-ADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         2 ~Ks~LqE~cqk~~~~~P~Y~~-~~~G-p~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      |...|-++|++++..-|++++ .++| ..-.|.|.|.++-|.+.++.| .|.|-|.|++.||.+||..+=.
T Consensus       234 P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG-~Gesl~~A~e~AA~dAL~k~y~  303 (333)
T KOG3769|consen  234 PRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQG-QGESLKLAEEQAARDALIKLYD  303 (333)
T ss_pred             hHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccC-cchHHHHHHHHHHHHHHHHHHc
Confidence            677899999999999999999 5555 456799999999999999997 9999999999999999998754

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=96.70  E-value=0.0017  Score=68.41  Aligned_cols=130  Identities=19%  Similarity=0.038  Sum_probs=89.7

Q ss_pred             ccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhcc-CChh---------hh--------HHHh---hh
Q 038761          105 REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLAC-DDFQ---------EA--------IFLY---AH  163 (365)
Q Consensus       105 ~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~-~g~~---------~~--------~~~~---~~  163 (365)
                      ..+|.|.++|++++++++..+++  .|.+||.|+-.||++.|+...- .|..         .+        .+..   .+
T Consensus       399 ~t~P~~~~~~t~e~r~~~~~~~a--~gps~~~~~wh~~~k~lq~~~~p~ga~~r~~~~ge~~a~~p~~~~r~~as~ddr~  476 (816)
T KOG3792|consen  399 DTKPSHRPRRTMEVRVNGLPAEA--EGPSKKTAKWHAARKRLQNEGRPTGAAQRFGRMGEDPASMPEPKGRRPASVDDRH  476 (816)
T ss_pred             ccCCcccchhhhhhhhcCCcccc--CCcccccchHHHHHHHhhccCCCccccccccccCCCcccCCCCCCcccCCCcchh
Confidence            78999999999999999999986  6999999999999999998721 0100         00        0000   00


Q ss_pred             h---------c--------cc---ccCCCcchhhHHHHHHHhcCCCCCeEEEE-eeC-CCCCCeEEEEEEECCEEEeeEe
Q 038761          164 V---------S--------MY---LWDDGVFYKNVLHELSLREGLPVPLYETI-KCG-APHMPTFISMVEVDGEVFYGKA  221 (365)
Q Consensus       164 l---------~--------~~---~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~G-p~h~~~F~~~V~i~g~~~~~G~  221 (365)
                      .         +        ..   +.....+....|+|-   +  ....|++. +.| -.|.++|+..|.+.|.. ..|.
T Consensus       477 a~~~~a~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~Ek---~--rg~k~El~set~~gs~~~R~v~gV~rvG~~-akG~  550 (816)
T KOG3792|consen  477 ANEKHAGIYPTEEELENVQRQVSHLERALKLVSDELAEK---R--RGDKYELPSETGTGSHDKRFVKGVMRVGIL-AKGL  550 (816)
T ss_pred             hhccccccCccHHHHHHHHHhhhHHHHhhcchhHHHhhh---c--cccceecccccCCCCCCceeeeeeeeeehh-hccc
Confidence            0         0        00   001123333344443   2  23367866 655 57999999999999976 4999


Q ss_pred             ccCHHHHHHHHHHHHHHHHHh
Q 038761          222 GRTKKKAEMKAAKVAYTALIE  242 (365)
Q Consensus       222 G~SKK~Ae~~AA~~aL~~L~~  242 (365)
                      +.++|-|+..|+..++..+..
T Consensus       551 ~~~gd~a~~~a~Lca~~pt~~  571 (816)
T KOG3792|consen  551 LLNGDRAVELALLCAEKPTSG  571 (816)
T ss_pred             cccchHHHHHHHHhccCcccc
Confidence            999999999999888776643

>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases

Probab=96.37  E-value=0.024  Score=45.36  Aligned_cols=64  Identities=28%  Similarity=0.201  Sum_probs=42.6

Q ss_pred             hhHHHHHHHhcC-----CCCCeEEEEeeCCCCCCeEEEEEEECC----EEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761          176 KNVLHELSLREG-----LPVPLYETIKCGAPHMPTFISMVEVDG----EVFYGKAGRTKKKAEMKAAKVAYTALIER  243 (365)
Q Consensus       176 ks~LqE~~qk~~-----~~~P~Y~~~~~Gp~h~~~F~~~V~i~g----~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~  243 (365)
                      ++.|+.||++.-     ...|.|.+...+.    .|.|+|.+=.    +.+....-.||+.||+.||-.|...|...
T Consensus         2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~----~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~   74 (90)
T PF03368_consen    2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS----GFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEA   74 (90)
T ss_dssp             HHHHHHHHTTSSS-TT--SS-EEEEEE--G-----EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCccCCceEEEEEcCC----cEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHc
Confidence            578999998843     2578999886542    7999998721    12322357899999999999999999875

This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.

>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases

Probab=96.25  E-value=0.011  Score=47.25  Aligned_cols=65  Identities=22%  Similarity=0.182  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHcCC-----CCCceeeeccCCCCCcceEEEEEEcCe----EEEeccccccHHHHHHHHHHHHHHHhccCC
Q 038761           84 KSVLQNYARRKNL-----DSPLYSSIREGPAHACSFKARVTIDGH----TFESLEFFKNLKQAEHAAAKVALFSLACDD  153 (365)
Q Consensus        84 ~s~L~E~~qk~~l-----~~P~Y~~~~~Gp~h~~~F~~~v~I~g~----~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g  153 (365)
                      ++.|+.||++..-     ..|.|.+...+.    .|.|+|.+-..    .+.+ ....+|+.||+.||..|++.|.+.|
T Consensus         2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~----~~~c~v~LP~~~pi~~i~g-~~~~sk~~AK~sAAf~Ac~~L~~~g   75 (90)
T PF03368_consen    2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS----GFICTVILPINSPIRSIEG-PPMRSKKLAKRSAAFEACKKLHEAG   75 (90)
T ss_dssp             HHHHHHHHTTSSS-TT--SS-EEEEEE--G-----EEEEEE--TT-SS--EEE-E--SSHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhcCCCCCCccCCceEEEEEcCC----cEEEEEECCCCCCCCeEEc-cccccHHHHHHHHHHHHHHHHHHcC
Confidence            6789999987642     246777765543    69999998532    2333 3578999999999999999997555

This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.

>PF14954 LIX1: Limb expression 1

Probab=95.08  E-value=0.055  Score=49.79  Aligned_cols=70  Identities=20%  Similarity=0.276  Sum_probs=52.3

Q ss_pred             CccCcHHHHHHHHH---HcCCCCCceeee--ccCCCCCcceEEEEEE-cCeEEEeccccccHHHHHHHHHHHHHHH
Q 038761           79 VQCRYKSVLQNYAR---RKNLDSPLYSSI--REGPAHACSFKARVTI-DGHTFESLEFFKNLKQAEHAAAKVALFS  148 (365)
Q Consensus        79 ~~~~~~s~L~E~~q---k~~l~~P~Y~~~--~~Gp~h~~~F~~~v~I-~g~~~~~~g~g~sKK~AK~~AA~~aL~~  148 (365)
                      ...|-+..|||+=|   ..+..++.-.++  +..|...+-|.|-|++ +|-.|+....+.||-+|++.||+.||..
T Consensus        19 ~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmN   94 (252)
T PF14954_consen   19 GDVNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMN   94 (252)
T ss_pred             ccchHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHH
Confidence            34577899999854   334444433222  4566667789999999 5678887778999999999999999985

>PF14954 LIX1: Limb expression 1

Probab=93.87  E-value=0.13  Score=47.27  Aligned_cols=70  Identities=21%  Similarity=0.232  Sum_probs=49.6

Q ss_pred             CCcchhhHHHHHHHhc---CCCCCeEE--EEeeCCCCCCeEEEEEEE-CCEEEee-EeccCHHHHHHHHHHHHHHHH
Q 038761          171 DGVFYKNVLHELSLRE---GLPVPLYE--TIKCGAPHMPTFISMVEV-DGEVFYG-KAGRTKKKAEMKAAKVAYTAL  240 (365)
Q Consensus       171 ~~~n~ks~LqE~~qk~---~~~~P~Y~--~~~~Gp~h~~~F~~~V~i-~g~~~~~-G~G~SKK~Ae~~AA~~aL~~L  240 (365)
                      ...|-+..|||+=|..   +-.++.=.  +.+..|...+-|+|-|++ +|-+|+. ....||-+|++.||+.||-.-
T Consensus        19 ~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmNS   95 (252)
T PF14954_consen   19 GDVNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMNS   95 (252)
T ss_pred             ccchHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHHH
Confidence            4578889999976553   32222211  225566777889999999 5656653 568999999999999998654

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=91.55  E-value=0.26  Score=54.11  Aligned_cols=71  Identities=21%  Similarity=0.254  Sum_probs=62.5

Q ss_pred             CcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCC
Q 038761           82 RYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDD  153 (365)
Q Consensus        82 ~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g  153 (365)
                      +-+..|..||.++.+. |.|.+..+|+....+|.|.|.+.+..+...+...+||+|..+||+.-+++|-..|
T Consensus         2 d~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~G   72 (1282)
T KOG0921|consen    2 DVKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREG   72 (1282)
T ss_pred             cHHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhc
Confidence            4578899999999986 8899998888888899999999999988777888999999999999999986443

>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=88.65  E-value=0.16  Score=51.21  Aligned_cols=67  Identities=25%  Similarity=0.342  Sum_probs=58.3

Q ss_pred             hHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761            2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP   71 (365)
Q Consensus         2 ~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~   71 (365)
                      +|..|..||-+.+..-|.|++...   .++.|...+.+.|+.|.++-+-.++|.|+|.||..+|+.....
T Consensus       377 ~k~~l~~~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l~  443 (477)
T KOG2334|consen  377 PKMVLADLCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNLW  443 (477)
T ss_pred             HHHHHHHhhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCcc
Confidence            688999999999999999999331   4568999999999999887679999999999999999987653

>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=84.50  E-value=0.44  Score=48.21  Aligned_cols=69  Identities=26%  Similarity=0.291  Sum_probs=60.4

Q ss_pred             CccCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhc
Q 038761           79 VQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLA  150 (365)
Q Consensus        79 ~~~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~  150 (365)
                      ....++..|..||.+.+..-|.|+++..   .+..|...++++|..|.+...-+++|.|+|.||..+|....
T Consensus       373 ~~~~~k~~l~~~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~  441 (477)
T KOG2334|consen  373 KWDTPKMVLADLCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSN  441 (477)
T ss_pred             CCCCHHHHHHHhhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcC
Confidence            3457899999999999999999999854   35689999999999998877899999999999999998863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	365
2l2n_A	103	Backbone 1h, 13c, And 15n Chemical Shift Assignment		3e-10
3adg_A	73	Structure Of Arabidopsis Hyl1 And Its Molecular Imp		5e-10

>pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For The First Dsrbd Of Protein Hyl1 Length = 103

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 45/68 (66%)
Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
           +KS LQ YA++  L +P+Y  ++EGP+H   F++ V +DG  + SL  F N K AE +AA
Sbjct: 19  FKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAA 78
Query: 143 KVALFSLA 150
           +VAL  LA
Sbjct: 79  EVALRELA 86

>pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular Implications For Mirna Processing Length = 73

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 45/68 (66%)
Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
           +KS LQ YA++  L +P+Y  ++EGP+H   F++ V +DG  + SL  F N K AE +AA
Sbjct: 5   FKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAA 64
Query: 143 KVALFSLA 150
           +VAL  LA
Sbjct: 65  EVALRELA 72

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	365
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	4e-41
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	1e-28
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	2e-17
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	9e-08
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	3e-23
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	2e-16
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	2e-15
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	4e-21
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	1e-19
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	2e-17
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	7e-20
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	6e-18
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	6e-17
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	6e-17
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	6e-16
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	2e-13
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	2e-16
1x49_A	97	Interferon-induced, double-stranded RNA- activated	6e-16
1x49_A	97	Interferon-induced, double-stranded RNA- activated	5e-11
1x49_A	97	Interferon-induced, double-stranded RNA- activated	5e-10
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	3e-14
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	3e-11
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	3e-14
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	1e-12
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	8e-09
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	9e-14
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	3e-11
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	6e-09
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	1e-13
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	5e-12
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	8e-09
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	1e-13
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	4e-11
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	6e-10
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	2e-13
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	1e-08
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	5e-07
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	2e-13
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	8e-13
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	2e-11
2dix_A	84	Interferon-inducible double stranded RNA- dependen	4e-13
2dix_A	84	Interferon-inducible double stranded RNA- dependen	2e-10
2dix_A	84	Interferon-inducible double stranded RNA- dependen	7e-10
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	4e-13
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	5e-11
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	3e-09
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	1e-12
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	5e-09
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	2e-08
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	2e-12
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	1e-10
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	5e-08
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	3e-12
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	2e-09
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	3e-08
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	4e-12
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	2e-07
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	7e-06
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	7e-12
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	8e-08
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	8e-07
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	1e-11
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	4e-09
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	7e-08
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	1e-11
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	3e-09
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	6e-09
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	1e-11
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	2e-08
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	2e-07
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	4e-11
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	1e-08
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	2e-07
2l33_A	91	Interleukin enhancer-binding factor 3; structural	7e-11
2l33_A	91	Interleukin enhancer-binding factor 3; structural	1e-06
2l33_A	91	Interleukin enhancer-binding factor 3; structural	2e-06
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	8e-11
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	3e-08
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	2e-07
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	7e-10
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	4e-07
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	3e-06
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	2e-08
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	3e-05
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	4e-04
2qvw_A	756	GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral	1e-07
2qvw_A	756	GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1x48_A	88	Interferon-induced, double-stranded RNA- activated	8e-07
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	1e-06
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	2e-06
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	3e-04
1t4o_A	117	Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro	4e-05
1t4n_A	94	Ribonuclease III; DSRBD, RNA-binding, hydrolase; N	2e-04

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179

 Score =  141 bits (358), Expect = 4e-41
 Identities = 37/162 (22%), Positives = 71/162 (43%), Gaps = 2/162 (1%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
           +   L  Y +++ +          GP H   F  +V IDG  F   E  ++ K+A++AAA
Sbjct: 15  FMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEG-RSKKEAKNAAA 73

Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
           K+A+  L  +    +  L    +         Y  +++ ++ ++ L V  YE    G   
Sbjct: 74  KLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVN-YEQCASGVHG 132

Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK 244
              F    ++  + +    G TK++A+  AAK+AY  ++  +
Sbjct: 133 PEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEE 174

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179

 Score =  108 bits (272), Expect = 1e-28
 Identities = 31/159 (19%), Positives = 55/159 (34%), Gaps = 14/159 (8%)

Query: 2   YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
           +  ++     ++   L        G  HD RF   V ++G  F      +S KE++N AA
Sbjct: 15  FMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEG-EGRSKKEAKNAAA 73

Query: 62  KLAFLHFTSPPPPPPPNV-----------QCRYKSVLQNYARRKNLDSPLYSSIREGPAH 110
           KLA            P +              Y  ++   A++K L +  Y     G   
Sbjct: 74  KLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRL-TVNYEQCASGVHG 132

Query: 111 ACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
              F  +  +    +         ++A+  AAK+A   +
Sbjct: 133 PEGFHYKCKMGQKEYSI-GTGSTKQEAKQLAAKLAYLQI 170

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179

 Score = 78.4 bits (193), Expect = 2e-17
 Identities = 28/106 (26%), Positives = 42/106 (39%)

Query: 163 HVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAG 222
           H+ M       F+   L+    ++G+ +   E    G PH   F   V +DG  F    G
Sbjct: 3   HMEMAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEG 62

Query: 223 RTKKKAEMKAAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKA 268
           R+KK+A+  AAK+A   L + K   S       + S G        
Sbjct: 63  RSKKEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIG 108

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179

 Score = 50.7 bits (121), Expect = 9e-08
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 2/74 (2%)

Query: 1   MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
            Y   +  +  QK+     Y     G      F     +    + S  +  + +E++  A
Sbjct: 105 NYIGLINRIA-QKKRLTVNYEQCASGVHGPEGFHYKCKMGQKEY-SIGTGSTKQEAKQLA 162

Query: 61  AKLAFLHFTSPPPP 74
           AKLA+L   S    
Sbjct: 163 AKLAYLQILSEETG 176

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76

 Score = 90.8 bits (226), Expect = 3e-23
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 171 DGVFYKNVLHELSLREGLPVPLYETIKC-GAPHMPTFISMVEVDGEVFYGKAGRTKKKAE 229
                KN+L E + +    +PLY+  K      +  F   VE+ G  + G A RTKK AE
Sbjct: 2   SHGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAE 61

Query: 230 MKAAKVAYTAL 240
           + A + A  A+
Sbjct: 62  ISAGRTALLAI 72

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76

 Score = 72.3 bits (178), Expect = 2e-16
 Identities = 13/67 (19%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 1  MYKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQND 59
          + K  +QE   +  +++P Y   K +      +F  +V + G+ +  + + ++ K+++  
Sbjct: 5  LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGA-ATRTKKDAEIS 63

Query: 60 AAKLAFL 66
          A + A L
Sbjct: 64 AGRTALL 70

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76

 Score = 69.6 bits (171), Expect = 2e-15
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIR-EGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
            K++LQ YA++ N   PLY   + E       F   V I G  +      +  K AE +A
Sbjct: 6   CKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTG-AATRTKKDAEISA 64

Query: 142 AKVALFSL 149
            + AL ++
Sbjct: 65  GRTALLAI 72

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73

 Score = 85.0 bits (211), Expect = 4e-21
 Identities = 31/68 (45%), Positives = 45/68 (66%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
           +KS LQ YA++  L +P+Y  ++EGP+H   F++ V +DG  + SL  F N K AE +AA
Sbjct: 5   FKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAA 64

Query: 143 KVALFSLA 150
           +VAL  LA
Sbjct: 65  EVALRELA 72

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73

 Score = 81.1 bits (201), Expect = 1e-19
 Identities = 17/65 (26%), Positives = 38/65 (58%)

Query: 1  MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
          ++K+++QE   + +   P Y  +K+G  H   F+S+V ++G+ ++S     + K ++  A
Sbjct: 4  VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 63

Query: 61 AKLAF 65
          A++A 
Sbjct: 64 AEVAL 68

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73

 Score = 75.0 bits (185), Expect = 2e-17
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVF-YGKAGRTKKKAEMKAA 233
           +K+ L E + +  LP P+YE +K G  H   F S V +DG  +        +K AE  AA
Sbjct: 5   FKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAA 64

Query: 234 KVAYTALIE 242
           +VA   L +
Sbjct: 65  EVALRELAK 73

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103

 Score = 82.9 bits (205), Expect = 7e-20
 Identities = 31/68 (45%), Positives = 45/68 (66%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
           +KS LQ YA++  L +P+Y  ++EGP+H   F++ V +DG  + SL  F N K AE +AA
Sbjct: 19  FKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAA 78

Query: 143 KVALFSLA 150
           +VAL  LA
Sbjct: 79  EVALRELA 86

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103

 Score = 77.2 bits (190), Expect = 6e-18
 Identities = 17/75 (22%), Positives = 38/75 (50%)

Query: 1  MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
          ++K+++QE   + +   P Y  +K+G  H   F+S+V ++G+ ++S     + K ++  A
Sbjct: 18 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 77

Query: 61 AKLAFLHFTSPPPPP 75
          A++A           
Sbjct: 78 AEVALRELAKSSELS 92

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103

 Score = 74.5 bits (183), Expect = 6e-17
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVF-YGKAGRTKKKAEMKAA 233
           +K+ L E + +  LP P+YE +K G  H   F S V +DG  +        +K AE  AA
Sbjct: 19  FKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAA 78

Query: 234 KVAYTALIER 243
           +VA   L + 
Sbjct: 79  EVALRELAKS 88

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128

 Score = 75.3 bits (185), Expect = 6e-17
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
            K  L  + RR+ L  P+Y +++        F + VT+    ++S  + K+ K AE  AA
Sbjct: 28  PKMCLLEWCRREKLPQPVYETVQRT--IDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAA 85

Query: 143 KVALFSL 149
            V L S 
Sbjct: 86  IVCLRSQ 92

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128

 Score = 72.7 bits (178), Expect = 6e-16
 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 2/103 (1%)

Query: 1   MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
             K  + E C +++   P Y T++     D  F S V+V    + S++  KS K ++  A
Sbjct: 27  TPKMCLLEWCRREKLPQPVYETVQRT--IDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTA 84

Query: 61  AKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSS 103
           A +       P            K   +   +         SS
Sbjct: 85  AIVCLRSQGLPEGRLGEESPSLNKRKREAPDQDPGGPRSGPSS 127

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128

 Score = 66.1 bits (161), Expect = 2e-13
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 169 WDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAG-RTKKK 227
           +   +  K  L E   RE LP P+YET++     M  F S+V V  + +      ++KK 
Sbjct: 22  YPPQITPKMCLLEWCRREKLPQPVYETVQRTIDRM--FCSVVTVAEQKYQSTLWDKSKKL 79

Query: 228 AEMKAAKVAYTAL 240
           AE  AA V   + 
Sbjct: 80  AEQTAAIVCLRSQ 92

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236

 Score = 76.9 bits (188), Expect = 2e-16
 Identities = 46/246 (18%), Positives = 79/246 (32%), Gaps = 25/246 (10%)

Query: 3   KTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
           K  + +L   +     +Y  +   G  H P F  SV VNG  F  S    + K+++  AA
Sbjct: 7   KNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGS--GPTKKKAKLHAA 62

Query: 62  KLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTID 121
           + A   F   P     ++                  S       +      +        
Sbjct: 63  EKALRSFVQFPNASEAHLA------------MGRTLSVNTDFTSDQADFPDTLFNGFETP 110

Query: 122 GHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHE 181
             +        N   +  ++  V+L +                 + +             
Sbjct: 111 DKSEPPFYVGSNGDDSFSSSGDVSLSASPVPAS------LTQPPLPIPPPFPPPSGKNPV 164

Query: 182 LSLREGLPVPLYETIKC-GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
           + L E  P   Y+ +   G  H  +F+  V VDG+ F G  GR KK A+ +AA+ A   +
Sbjct: 165 MILNELRPGLKYDFLSESGESHAKSFVMSVVVDGQFFEGS-GRNKKLAKARAAQSALATV 223

Query: 241 IERKLI 246
               L+
Sbjct: 224 FNLHLL 229

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97

 Score = 71.7 bits (176), Expect = 6e-16
 Identities = 22/75 (29%), Positives = 33/75 (44%)

Query: 170 DDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAE 229
           D   FY + L++     G+ +   E    G PH   F   V +D + F    GR+K++A 
Sbjct: 11  DTPGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEAR 70

Query: 230 MKAAKVAYTALIERK 244
             AAK+A   L    
Sbjct: 71  NAAAKLAVDILDNEN 85

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97

 Score = 57.8 bits (140), Expect = 5e-11
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
          Y  K+ +   Q       Y  +   G  HD RF   V ++   F  +   +S +E++N A
Sbjct: 16 YMDKLNKYR-QMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKG-RSKQEARNAA 73

Query: 61 AKLAF 65
          AKLA 
Sbjct: 74 AKLAV 78

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97

 Score = 55.1 bits (133), Expect = 5e-10
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
           Y   L  Y +   + +  Y  +   GP H   F  +V ID   F   +  ++ ++A +AA
Sbjct: 16  YMDKLNKYRQMHGV-AITYKELSTSGPPHDRRFTFQVLIDEKEFPEAK-GRSKQEARNAA 73

Query: 142 AKVALFSL 149
           AK+A+  L
Sbjct: 74  AKLAVDIL 81

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232

 Score = 70.6 bits (172), Expect = 3e-14
 Identities = 33/199 (16%), Positives = 60/199 (30%), Gaps = 26/199 (13%)

Query: 67  HFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTID 121
           H +    P                +L  Y +R     P+Y+           F A VTID
Sbjct: 3   HMSVQDAPTKKEFVINPNGKSEVCILHEYMQRVLKVRPVYNFFECENPSE-PFGASVTID 61

Query: 122 GHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMY--LWDDGVFYKNVL 179
           G T+ S     + K A++ AA+  L  L  D  ++        S     ++      + +
Sbjct: 62  GVTYGSGTA-SSKKLAKNKAARATLEILIPDFVKQTSEEKPKDSEELEYFNHISIEDSRV 120

Query: 180 HELSLREGLPVP----------------LYETIKCGAPHMPTFISMVEVDGEVFYGKAGR 223
           +EL+ + GL  P                     +           ++        G   +
Sbjct: 121 YELTSKAGLLSPYQILHECLKRNHGMGDTSIKFEVVPGKNQKSEYVMACGKHTVRGW-CK 179

Query: 224 TKKKAEMKAAKVAYTALIE 242
            K+  +  A++     L  
Sbjct: 180 NKRVGKQLASQKILQLLHP 198

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232

 Score = 61.7 bits (149), Expect = 3e-11
 Identities = 22/177 (12%), Positives = 48/177 (27%), Gaps = 33/177 (18%)

Query: 2   YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
               + E   +     P      +  +    F +SV+++G+++ S  +  S K ++N AA
Sbjct: 24  EVCILHEYMQRVLKVRP-VYNFFECENPSEPFGASVTIDGVTYGSG-TASSKKLAKNKAA 81

Query: 62  KLAF---------------------------LHFTSPPPPPPPNVQCRYK--SVLQNYAR 92
           +                              +           +         +L    +
Sbjct: 82  RATLEILIPDFVKQTSEEKPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHECLK 141

Query: 93  RKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
           R +            P      +  +    HT       KN +  +  A++  L  L
Sbjct: 142 RNHGMGDTSIKFEVVPGKNQKSEYVMACGKHTVRGWC--KNKRVGKQLASQKILQLL 196

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Length = 88

 Score = 66.6 bits (163), Expect = 3e-14
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 175 YKNVLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
               L EL +++G  +P Y   +  G  H   F     V+  +  G  G +KK A+  AA
Sbjct: 17  EVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGS-GTSKKLAKRNAA 75

Query: 234 KVAYTAL 240
                 +
Sbjct: 76  AKMLLRV 82

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Length = 88

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
              +QEL  QK W LP Y+  ++ G  H   F  +  V         S  S K ++ +A
Sbjct: 17 EVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIG--SGTSKKLAKRNA 74

Query: 61 AKLAFLHFTSPPP 73
          A    L   + P 
Sbjct: 75 AAKMLLRVHTVPL 87

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Length = 88

 Score = 51.2 bits (123), Expect = 8e-09
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 7/82 (8%)

Query: 69  TSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFES 127
           +S   P   +        LQ    +K    P Y+  +E GPAH   F     ++      
Sbjct: 7   SSGLVPRGSH----EVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIG 62

Query: 128 LEFFKNLKQAEHAAAKVALFSL 149
                + K A+  AA   L  +
Sbjct: 63  SG--TSKKLAKRNAAAKMLLRV 82

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69

 Score = 64.5 bits (158), Expect = 9e-14
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 176 KNVLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
              L EL++++G  +P Y   +  G PH   F     V+  V  G  G +K+ A+  AA+
Sbjct: 3   VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGS-GTSKQVAKRVAAE 61

Query: 235 VAYTAL 240
              T  
Sbjct: 62  KLLTKF 67

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69

 Score = 57.6 bits (140), Expect = 3e-11
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 3  KTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
             +QEL  QK W LP Y+  +  G  H   F  +  V       S + K  + ++  AA
Sbjct: 3  VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSK--QVAKRVAA 60

Query: 62 KLA 64
          +  
Sbjct: 61 EKL 63

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69

 Score = 51.0 bits (123), Expect = 6e-09
 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 84  KSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
              LQ  A +K    P Y+     GP H   F     ++           + + A+  AA
Sbjct: 3   VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSG--TSKQVAKRVAA 60

Query: 143 KVALFSL 149
           +  L   
Sbjct: 61  EKLLTKF 67

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 175 YKNVLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
             + L ++        P Y  +   G P    F+  V+V  EV  G  G  KK A+  AA
Sbjct: 8   PISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGT-GPNKKIAKKNAA 66

Query: 234 KVAYTAL 240
           +     L
Sbjct: 67  EAMLLQL 73

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89

 Score = 60.4 bits (147), Expect = 5e-12
 Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 3/78 (3%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
            +++ ++   ++   P Y  +   G      F   V V       +   K  K ++ +A
Sbjct: 8  PISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNK--KIAKKNA 65

Query: 61 AKLAFLHFTSPPPPPPPN 78
          A+   L           +
Sbjct: 66 AEAMLLQLGYKASTSLQD 83

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89

 Score = 51.2 bits (123), Expect = 8e-09
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
             S L    + +    P Y  + E G      F  +V +            N K A+  A
Sbjct: 8   PISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATG--TGPNKKIAKKNA 65

Query: 142 AKVALFSL 149
           A+  L  L
Sbjct: 66  AEAMLLQL 73

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Length = 90

 Score = 65.0 bits (159), Expect = 1e-13
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 175 YKNVLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
             ++L E   R G   P+Y+ +K  G  H P F   V V      G+ G +KK A+ KAA
Sbjct: 16  PISLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQ-GPSKKAAKHKAA 73

Query: 234 KVAYTAL 240
           +VA   L
Sbjct: 74  EVALKHL 80

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Length = 90

 Score = 58.1 bits (141), Expect = 4e-11
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
            + +QE    +    P Y  +K +G  H P F   V+V   S       K  K +++ A
Sbjct: 16 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSK--KAAKHKA 72

Query: 61 AKLAFLHFTSPPPPPP 76
          A++A  H        P
Sbjct: 73 AEVALKHLKGGSMLEP 88

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Length = 90

 Score = 54.6 bits (132), Expect = 6e-10
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 83  YKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
             S+LQ Y  R    +P+Y  +  EG AH  +F  RVT+   +        + K A+H A
Sbjct: 16  PISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQG--PSKKAAKHKA 72

Query: 142 AKVALFSL 149
           A+VAL  L
Sbjct: 73  AEVALKHL 80

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98

 Score = 64.9 bits (158), Expect = 2e-13
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
              +LHE   R     P+Y   +C  P    F + V +DG  +      +KK A+ KAA+
Sbjct: 18  EVCILHEYMQRVLKVRPVYNFFECENPS-EPFGASVTIDGVTYGSGTASSKKLAKNKAAR 76

Query: 235 VAYTALI 241
                LI
Sbjct: 77  ATLEILI 83

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIR-EGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
              +L  Y +R     P+Y+    E P+    F A VTIDG T+ S     + K A++ A
Sbjct: 18  EVCILHEYMQRVLKVRPVYNFFECENPSE--PFGASVTIDGVTYGS-GTASSKKLAKNKA 74

Query: 142 AKVAL 146
           A+  L
Sbjct: 75  ARATL 79

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98

 Score = 46.4 bits (110), Expect = 5e-07
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
              + E   +     P Y    +  +    F +SV+++G+++ S  +  S K ++N AA
Sbjct: 18 EVCILHEYMQRVLKVRPVY-NFFECENPSEPFGASVTIDGVTYGSG-TASSKKLAKNKAA 75

Query: 62 KLAF 65
          +   
Sbjct: 76 RATL 79

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Length = 99

 Score = 64.5 bits (157), Expect = 2e-13
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKA-GRTKKKAEMKAA 233
            KN L+    +  +  P YE    G  +   F+  V V+G  + G      KK A+  AA
Sbjct: 8   IKNFLYAWCGKRKMT-PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAA 66

Query: 234 KVAYTALIERKLI 246
           +     L+    +
Sbjct: 67  RDFVNYLVRINEV 79

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Length = 99

 Score = 63.0 bits (153), Expect = 8e-13
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
           K  +   C +++   P Y     G  +  +F   V V G ++    +  + K++Q++AA
Sbjct: 8  IKNFLYAWCGKRKM-TPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAA 66

Query: 62 KLAFLHFT 69
          +    +  
Sbjct: 67 RDFVNYLV 74

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Length = 99

 Score = 59.1 bits (143), Expect = 2e-11
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
            K+ L  +  ++ +  P Y     G  +   F   V ++G  +  +    N K A+  AA
Sbjct: 8   IKNFLYAWCGKRKMT-PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAA 66

Query: 143 KVALFSLA 150
           +  +  L 
Sbjct: 67  RDFVNYLV 74

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84

 Score = 63.5 bits (155), Expect = 4e-13
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 176 KNVLHELSLREGLPVPLYETIKC-GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
             VLHE  ++    +P+YE  +     H+PTF   V V      G+ G +KK A+ +AA+
Sbjct: 11  IQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDITCTGE-GTSKKLAKHRAAE 68

Query: 235 VAYTAL 240
            A   L
Sbjct: 69  AAINIL 74

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 3  KTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
             + E    K  ++P Y   + D   H P F   V+V  ++        S K +++ AA
Sbjct: 11 IQVLHEYG-MKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTG--EGTSKKLAKHRAA 67

Query: 62 KLAFLHFTSPPPPPPP 77
          + A     +    P  
Sbjct: 68 EAAINILKANASGPSS 83

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84

 Score = 54.3 bits (131), Expect = 7e-10
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 84  KSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
             VL  Y  +     P+Y     +   H  +F  RVT+   T        + K A+H AA
Sbjct: 11  IQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDITCTG--EGTSKKLAKHRAA 67

Query: 143 KVALFSL 149
           + A+  L
Sbjct: 68  EAAINIL 74

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 89

 Score = 63.5 bits (155), Expect = 4e-13
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 175 YKNVLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
               L EL +++G  +P Y   +  G  H   F     V+  +  G  G +KK A+  AA
Sbjct: 18  PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGS-GTSKKLAKRNAA 76

Query: 234 KVAYTAL 240
                 +
Sbjct: 77  AKMLLRV 83

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 89

 Score = 57.7 bits (140), Expect = 5e-11
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
              +QEL  QK W LP Y+  +  G  H   F  +  V       S + K  K ++ +A
Sbjct: 18 PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSK--KLAKRNA 75

Query: 61 AKLA 64
          A   
Sbjct: 76 AAKM 79

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 89

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 73  PPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFF 131
           P  P   +C     LQ    +K    P Y+  +E GPAH   F     ++          
Sbjct: 8   PVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSG-- 65

Query: 132 KNLKQAEHAAAKVALFSL 149
            + K A+  AA   L  +
Sbjct: 66  TSKKLAKRNAAAKMLLRV 83

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 175 YKNVLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKA-GRTKKKAEMKA 232
           YK  L E+   E    P Y  ++         F+  V V+G+       GRTKK+AE +A
Sbjct: 181 YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKT-IATGKGRTKKEAEKEA 239

Query: 233 AKVAYTALIERK 244
           A++AY  L++ +
Sbjct: 240 ARIAYEKLLKER 251

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252

 Score = 55.3 bits (134), Expect = 5e-09
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 2   YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
           YKT +QE+   +    P Y  ++ +  D D  F   V VNG +  +    ++ KE++ +A
Sbjct: 181 YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKG-RTKKEAEKEA 239

Query: 61  AKLAF 65
           A++A+
Sbjct: 240 ARIAY 244

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
           YK+ LQ   + ++   P Y  +R         F   V ++G T  + +  +  K+AE  A
Sbjct: 181 YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGK-GRTKKEAEKEA 239

Query: 142 AKVALFSL 149
           A++A   L
Sbjct: 240 ARIAYEKL 247

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221

 Score = 65.2 bits (160), Expect = 2e-12
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 175 YKNVLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
           YK +L E++ +     P Y  I   G  H   FI   ++      G+ G++KK+AE +AA
Sbjct: 152 YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGE-GKSKKEAEQRAA 210

Query: 234 KVAYTALIERK 244
           +     L E +
Sbjct: 211 EELIKLLEESE 221

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 2   YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
           YKT +QE+  ++    P Y  +  +G  H  +F     +           KS KE++  A
Sbjct: 152 YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLG--EGKSKKEAEQRA 209

Query: 61  AKLA 64
           A+  
Sbjct: 210 AEEL 213

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221

 Score = 52.1 bits (126), Expect = 5e-08
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
           YK++LQ   +++  + P Y  I   GP H   F     I  +        K+ K+AE  A
Sbjct: 152 YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEG--KSKKEAEQRA 209

Query: 142 AKVALFSL 149
           A+  +  L
Sbjct: 210 AEELIKLL 217

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76

 Score = 60.4 bits (147), Expect = 3e-12
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 175 YKNVLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
             + +HE+ ++  + V  ++ ++  G  HM  FI+   V   V  G+ G  KK ++ +AA
Sbjct: 9   PISQVHEIGIKRNMTVH-FKVLREEGPAHMKNFITACIVGSIVTEGE-GNGKKVSKKRAA 66

Query: 234 KVAYTAL 240
           +     L
Sbjct: 67  EKMLVEL 73

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
             S +     ++N+ +  +  +RE GPAH  +F     +     E        K ++  A
Sbjct: 9   PISQVHEIGIKRNM-TVHFKVLREEGPAHMKNFITACIVGSIVTEG--EGNGKKVSKKRA 65

Query: 142 AKVALFSL 149
           A+  L  L
Sbjct: 66  AEKMLVEL 73

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
            ++V E+  ++  +   +  ++ +G  H   F ++  V  +      + K  K S+  A
Sbjct: 9  PISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSIVTEGEGNGK--KVSKKRA 65

Query: 61 AKLA 64
          A+  
Sbjct: 66 AEKM 69

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Length = 75

 Score = 60.4 bits (147), Expect = 4e-12
 Identities = 28/74 (37%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 168 LWDDGVFYKNVLHELSLREGLPVPLYETIKC-GAPHMPTFISMVEVDGEVFYGKAGRTKK 226
           L   G      L+E   R GL    YE I   G  H   F+  VEVDG+ F G  G  KK
Sbjct: 2   LTKHGKNPVMELNEK--RRGLK---YELISETGGSHDKRFVMEVEVDGQKFQGA-GSNKK 55

Query: 227 KAEMKAAKVAYTAL 240
            A+  AA  A   L
Sbjct: 56  VAKAYAALAALEKL 69

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Length = 75

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
               L    R        Y  I E G +H   F   V +DG  F+      N K A+  A
Sbjct: 9   PVMELNEKRR-----GLKYELISETGGSHDKRFVMEVEVDGQKFQGAG--SNKKVAKAYA 61

Query: 142 AKVALFSL 149
           A  AL  L
Sbjct: 62  ALAALEKL 69

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Length = 75

 Score = 42.6 bits (101), Expect = 7e-06
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
             ++ E     ++ L      + G  HD RF   V V+G  F  + S K  K ++  AA
Sbjct: 9  PVMELNEKRRGLKYELIS----ETGGSHDKRFVMEVEVDGQKFQGAGSNK--KVAKAYAA 62

Query: 62 KLAFLHFTSPPP 73
            A        P
Sbjct: 63 LAALEKLFPDTP 74

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71

 Score = 59.2 bits (144), Expect = 7e-12
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 175 YKNVLHELSLREGLPVPLYETIKC-GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
              +L+EL      P   Y+ +   G  H  +F+  V VDG+ F G  GR KK A+ +AA
Sbjct: 6   PVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFFEGS-GRNKKLAKARAA 59

Query: 234 KVAYTALIERKL 245
           + A   +    L
Sbjct: 60  QSALATVFNLHL 71

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71

 Score = 48.0 bits (115), Expect = 8e-08
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
              +L             Y  + E G +HA SF   V +DG  FE     +N K A+  A
Sbjct: 6   PVMILNELRPGLK-----YDFLSESGESHAKSFVMSVVVDGQFFEGSG--RNKKLAKARA 58

Query: 142 AKVALFSL 149
           A+ AL ++
Sbjct: 59  AQSALATV 66

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71

 Score = 45.0 bits (107), Expect = 8e-07
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
              + EL    ++        + G  H   F  SV V+G  F    S ++ K ++  AA
Sbjct: 6  PVMILNELRPGLKYDFLS----ESGESHAKSFVMSVVVDGQFFEG--SGRNKKLAKARAA 59

Query: 62 KLA 64
          + A
Sbjct: 60 QSA 62

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 175 YKNVLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
           YK  L E++  +    P YET++  G  H+  F   + +DG+        +KK+A+  AA
Sbjct: 179 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAA 238

Query: 234 KVAYTAL 240
           K+A   L
Sbjct: 239 KIALEKL 245

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248

 Score = 55.7 bits (135), Expect = 4e-09
 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 2   YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
           YKTK+QE+   K    P+Y T++  G DH  +F+ ++ ++G     +++  S KE+Q  A
Sbjct: 179 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIA-GSKKEAQQMA 237

Query: 61  AKLAF 65
           AK+A 
Sbjct: 238 AKIAL 242

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248

 Score = 51.8 bits (125), Expect = 7e-08
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 10/72 (13%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFF----KNLKQA 137
           YK+ LQ   + K   +P Y ++R  GP H   F+  + +DG      E       + K+A
Sbjct: 179 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGK-----ELARAIAGSKKEA 233

Query: 138 EHAAAKVALFSL 149
           +  AAK+AL  L
Sbjct: 234 QQMAAKIALEKL 245

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242

 Score = 63.0 bits (154), Expect = 1e-11
 Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKA-GRTKKKAEMKAA 233
           +K  L EL+   GL  P Y     G  H   F ++V V     YG   GR+KK+AE KAA
Sbjct: 164 WKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSE-YGSGVGRSKKEAEQKAA 222

Query: 234 KVAYTAL 240
             A+ AL
Sbjct: 223 AAAWKAL 229

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 2   YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
           +KT +QEL   +    P Y     G DHD  F + V V    + S V  +S KE++  AA
Sbjct: 164 WKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVG-RSKKEAEQKAA 222

Query: 62  KLAFLHFTSPPPPPPPN 78
             A+          P  
Sbjct: 223 AAAWKALEVLDNAMPGK 239

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242

 Score = 54.9 bits (133), Expect = 6e-09
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
           +K+ LQ     + L +P Y     GP H   F A V +    + S    ++ K+AE  AA
Sbjct: 164 WKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGV-GRSKKEAEQKAA 222

Query: 143 KVALFSL 149
             A  +L
Sbjct: 223 AAAWKAL 229

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} Length = 114

 Score = 59.9 bits (145), Expect = 1e-11
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 175 YKNVLHELSLREGLPVPLYETIKC-GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
            KN +  L+  E     +Y+     G  H P F   VEVDG+ + G+ GR+KK A ++AA
Sbjct: 36  PKNTVAMLN--ELRHGLIYKLESQTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAA 92

Query: 234 KVAYTALIERK 244
             A  + I+ K
Sbjct: 93  ATALRSFIQFK 103

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} Length = 114

 Score = 51.1 bits (122), Expect = 2e-08
 Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 2   YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
            K  V  L   +      Y      G  H P F  SV V+G  +      +S K ++ +A
Sbjct: 36  PKNTVAMLNELRH--GLIYKLESQTGPVHAPLFTISVEVDGQKYLG--QGRSKKVARIEA 91

Query: 61  AKLA---FLHFTSPPPPPPP 77
           A  A   F+ F       P 
Sbjct: 92  AATALRSFIQFKDGAVLSPL 111

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} Length = 114

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 5/82 (6%)

Query: 69  TSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFES 127
           + P          + K+ +      ++    +Y    + GP HA  F   V +DG  +  
Sbjct: 22  SDPKKKMCKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHAPLFTISVEVDGQKYLG 79

Query: 128 LEFFKNLKQAEHAAAKVALFSL 149
               ++ K A   AA  AL S 
Sbjct: 80  QG--RSKKVARIEAAATALRSF 99

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Length = 85

 Score = 57.7 bits (140), Expect = 4e-11
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 175 YKNVLHELSLREGL-----PVPLYETIKC-GAPHMPTFISMVEVDGEVFYGKAGRTKKKA 228
            K+ L +  L          +PLY+T++  G  H  T+   V   GE      G + ++A
Sbjct: 3   PKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQA 62

Query: 229 EMKAAKVAYTAL 240
           EM AA  A    
Sbjct: 63  EMGAAMDALEKY 74

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Length = 85

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 2  YKTKVQELCH-----QKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKE 55
           K+++Q+ C       K   +P Y T++  G  H   +  +V   G          S ++
Sbjct: 3  PKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKG-PSIQQ 61

Query: 56 SQNDAAKLA 64
          ++  AA  A
Sbjct: 62 AEMGAAMDA 70

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Length = 85

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 83  YKSVLQNYA-----RRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQ 136
            KS LQ          K  D PLY +++  GP+HA ++   V   G      +   +++Q
Sbjct: 3   PKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGK-GPSIQQ 61

Query: 137 AEHAAAKVAL 146
           AE  AA  AL
Sbjct: 62  AEMGAAMDAL 71

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Length = 91

 Score = 57.1 bits (138), Expect = 7e-11
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 178 VLHELSLREGLPVPLYETIKC-GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
            L+E           YE I   G  H   F+  VEVDG+ F G  G  KK A+  AA  A
Sbjct: 22  ELNEKR-----RGLKYELISETGGSHDKRFVMEVEVDGQKFQGA-GSNKKVAKAYAALAA 75

Query: 237 YTAL 240
              L
Sbjct: 76  LEKL 79

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Length = 91

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 2  YKTKVQELCHQKRWSLPRYS-TMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
           K  V EL  ++R    +Y    + G  HD RF   V V+G  F  + S K  K ++  A
Sbjct: 16 GKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNK--KVAKAYA 71

Query: 61 AKLAFLHFTSPPPPPPP 77
          A  A        P    
Sbjct: 72 ALAALEKLFPDTPLALD 88

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Length = 91

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 106 EGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
            G +H   F   V +DG  F+      N K A+  AA  AL  L
Sbjct: 38  TGGSHDKRFVMEVEVDGQKFQGAG--SNKKVAKAYAALAALEKL 79

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A Length = 73

 Score = 56.5 bits (137), Expect = 8e-11
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 176 KNVLHELSLREGLPVPLYETIKC-GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
           KN L +L+  E  P   Y  +   G  H P F+  VEV+G+VF G  G TKKKA++ AA+
Sbjct: 7   KNALMQLN--EIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGS-GPTKKKAKLHAAE 63

Query: 235 VAYTALIE 242
            A  + ++
Sbjct: 64  KALRSFVQ 71

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A Length = 73

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 12/80 (15%)

Query: 71  PPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLE 129
           P P  P N        L             Y  + + GP HA  F   V ++G  FE   
Sbjct: 1   PGPVLPKN----ALMQLNEIKP-----GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSG 51

Query: 130 FFKNLKQAEHAAAKVALFSL 149
                K+A+  AA+ AL S 
Sbjct: 52  --PTKKKAKLHAAEKALRSF 69

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A Length = 73

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 3  KTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
          K  + +L   K     +Y  +   G  H P F  SV VNG  F    S  + K+++  AA
Sbjct: 7  KNALMQLNEIKP--GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEG--SGPTKKKAKLHAA 62

Query: 62 KLAF 65
          + A 
Sbjct: 63 EKAL 66

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 97

 Score = 54.4 bits (131), Expect = 7e-10
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 175 YKNVLHELSLREGLPVPLYETIKC-GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
             N L  L   +  P   Y+ +   G  H P F   V+VDG  +    G +KK A++  A
Sbjct: 18  LMNALMRL--NQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEAS-GPSKKTAKLHVA 74

Query: 234 KVAYTAL 240
                A+
Sbjct: 75  VKVLQAM 81

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 97

 Score = 46.7 bits (111), Expect = 4e-07
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
             + L    + +      Y  + + GP HA  F   V +DG T+E+     + K A+   
Sbjct: 18  LMNALMRLNQIRPG--LQYKLLSQSGPVHAPVFTMSVDVDGTTYEASG--PSKKTAKLHV 73

Query: 142 AKVALFSL 149
           A   L ++
Sbjct: 74  AVKVLQAM 81

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 97

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
              +  L   +     +Y  +   G  H P F  SV V+G ++ +  S  S K ++   
Sbjct: 18 LMNALMRL--NQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEA--SGPSKKTAKLHV 73

Query: 61 AKLA 64
          A   
Sbjct: 74 AVKV 77

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKA-GRTKKKAEMKAA 233
            KN L EL     L   L+         MP F   V++   +   +A G + ++AE +AA
Sbjct: 256 AKNELAELLQINKLGHKLHYRKL---TEMPPFRVEVKIGDIL-LDEAEGNSIREAEHRAA 311

Query: 234 KVAYTAL 240
                  
Sbjct: 312 MKVLEND 318

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 2   YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
            K ++ EL    +     +          P F+  V +  +    +    S +E+++ AA
Sbjct: 256 AKNELAELLQINKLGHKLHYR---KLTEMPPFRVEVKIGDILLDEAEG-NSIREAEHRAA 311

Query: 62  KLAF 65
               
Sbjct: 312 MKVL 315

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 12/68 (17%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFF----KNLKQAE 138
            K+ L    +   L   L+            F+  V I       +        ++++AE
Sbjct: 256 AKNELAELLQINKLGHKLHY---RKLTEMPPFRVEVKIGD-----ILLDEAEGNSIREAE 307

Query: 139 HAAAKVAL 146
           H AA   L
Sbjct: 308 HRAAMKVL 315

>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 13/101 (12%), Positives = 26/101 (25%), Gaps = 4/101 (3%)

Query: 2   YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
             TK  +           + ++ D   +       S  V+ +         +        
Sbjct: 449 AVTKASKRVCMGEAGAHEFRSLVDYACEQGISVFCSSRVSTMFLERLRDIPAEDMLDWYR 508

Query: 61  AKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLY 101
             + F H         P        ++ + AR   L SP +
Sbjct: 509 LGIQFSH---RSGLSGPGGVVSVIDIMTHLARGLWLGSPGF 546

>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 4/63 (6%), Positives = 11/63 (17%), Gaps = 2/63 (3%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFF-KNLKQAEHA 140
             +            +  + S+ +       S      +     E L           + 
Sbjct: 449 AVTKASKRVCMGEAGAHEFRSLVDYACEQGISVFCSSRVSTMFLERLRDIPAEDMLDWYR 508

Query: 141 AAK 143
              
Sbjct: 509 LGI 511

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 4e-07
 Identities = 65/375 (17%), Positives = 114/375 (30%), Gaps = 111/375 (29%)

Query: 5   KVQELCHQKRWSLPRYSTMKDGADHDPR------------FKSSVSVNGL---------- 42
            +Q+L +Q     P +++  D + +                KS    N L          
Sbjct: 201 MLQKLLYQID---PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 43  ---SFHSSVSCK-----SSKESQNDAAKLAFLHFTSPPPPP---PPNVQCRYKSVLQNYA 91
              +F  ++SCK       K+  +  +     H +         P  V    KS+L  Y 
Sbjct: 258 AWNAF--NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV----KSLLLKYL 311

Query: 92  RRKNLD--------SPLYSSI-----REGPAHACSFKARVTID--GHTFESLEFFKNLKQ 136
             +  D        +P   SI     R+G A   ++K  V  D      ES      L+ 
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-HVNCDKLTTIIES--SLNVLEP 368

Query: 137 AEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYK-----NVLHELSLREGLPVP 191
           AE+   +     L+   F  +  +   +   +W D +        N LH+ SL E  P  
Sbjct: 369 AEY---RKMFDRLSV--FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 192 -------LYETIKCGAPHMPTF-ISMVE-----------------VDGEVFYGKAGRTKK 226
                  +Y  +K    +      S+V+                 +D   FY   G   K
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-YFYSHIGHHLK 482

Query: 227 KAEMKAAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKADGVPNSTLSSDLDVTLDP 286
             E    ++     + R +     F          +   ++ D    +   S L+     
Sbjct: 483 NIEH-PERMT----LFRMVFLDFRF----------LEQKIRHDSTAWNASGSILNTLQQL 527

Query: 287 NFIQKSMSVSSPVLE 301
            F +  +  + P  E
Sbjct: 528 KFYKPYICDNDPKYE 542

>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 88

 Score = 45.8 bits (108), Expect = 8e-07
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
           Y  +++  + ++ L V  YE  +  +     FI   ++   ++   +G TK++A+  AAK
Sbjct: 8   YIGLVNSFAQKKKLSVN-YEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAK 66

Query: 235 VAYTAL 240
            AY  L
Sbjct: 67  EAYQKL 72

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 175 YKNVLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
            ++ + EL   E    P           +       VEV G+  +   GR+ + A+  AA
Sbjct: 199 PRSPVRELLEME----PETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAA 254

Query: 234 KVAYTALIERK 244
           + A  +L   +
Sbjct: 255 RRALRSLKANQ 265

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 1   MYKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQND 59
           + ++ V+EL   +    P  +        +D + + +V V G      V  +S + +++ 
Sbjct: 198 VPRSPVRELLEME----PETAKFSPAERTYDGKVRVTVEVVGKGKFKGVG-RSYRIAKSA 252

Query: 60  AAKLA 64
           AA+ A
Sbjct: 253 AARRA 257

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 14/72 (19%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFF----KNLKQA 137
            +S ++     +    P  +        +    +  V + G        F    ++ + A
Sbjct: 199 PRSPVRELLEME----PETAKFSPAERTYDGKVRVTVEVVGK-----GKFKGVGRSYRIA 249

Query: 138 EHAAAKVALFSL 149
           + AAA+ AL SL
Sbjct: 250 KSAAARRALRSL 261

>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B Length = 117

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEV-DGEVFYGKAGRTKKKAEMKAA 233
            K  L+ L     L    Y T+K      P  I    V DG V     GR  K A ++AA
Sbjct: 10  AKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAA 68

Query: 234 KVAYTALIERKLI 246
           +    AL ++K++
Sbjct: 69  EN---ALRDKKML 78

>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1 Length = 94

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEV-DGEVFYGKAGRTKKKAEMKAAK 234
           K  L+ L     L    Y T+K      P  I    V DG V     GR  K A ++AA+
Sbjct: 9   KRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAE 67

Query: 235 VA 236
            A
Sbjct: 68  NA 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	365
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	99.97
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	99.97
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	99.95
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	99.94
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	99.92
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	99.9
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	99.82
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	99.81
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	99.8
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	99.78
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	99.78
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	99.78
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	99.78
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	99.77
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	99.77
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	99.77
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	99.77
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	99.76
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	99.76
2dix_A	84	Interferon-inducible double stranded RNA- dependen	99.75
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	99.74
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	99.74
2dix_A	84	Interferon-inducible double stranded RNA- dependen	99.74
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	99.74
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	99.73
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	99.73
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	99.73
1x49_A	97	Interferon-induced, double-stranded RNA- activated	99.72
1x49_A	97	Interferon-induced, double-stranded RNA- activated	99.72
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	99.72
1x48_A	88	Interferon-induced, double-stranded RNA- activated	99.72
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	99.72
1x48_A	88	Interferon-induced, double-stranded RNA- activated	99.71
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	99.71
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	99.7
1t4n_A	94	Ribonuclease III; DSRBD, RNA-binding, hydrolase; N	99.7
1uil_A	113	Double-stranded RNA-binding motif; structural geno	99.7
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	99.7
1uil_A	113	Double-stranded RNA-binding motif; structural geno	99.7
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	99.69
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	99.69
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	99.69
2l33_A	91	Interleukin enhancer-binding factor 3; structural	99.68
1t4n_A	94	Ribonuclease III; DSRBD, RNA-binding, hydrolase; N	99.68
1t4o_A	117	Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro	99.67
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	99.66
2l33_A	91	Interleukin enhancer-binding factor 3; structural	99.65
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	99.65
1t4o_A	117	Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro	99.65
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	99.64
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	99.62
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	99.62
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	99.59
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	99.56
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	99.56
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	99.55
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	99.53
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	99.52
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	99.51
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	99.49
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	99.47
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	99.42
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	99.41
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	99.37
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	99.16
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	99.01
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	98.8
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	98.56
2kou_A	102	Dicer-like protein 4; ATP-binding, endonuclease, h	95.66
2kou_A	102	Dicer-like protein 4; ATP-binding, endonuclease, h	95.12
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	88.41
2db2_A	119	KIAA0890 protein; DSRM domain, structural genomics	87.3
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	84.92
2db2_A	119	KIAA0890 protein; DSRM domain, structural genomics	80.05

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1

Probab=99.97  E-value=9.3e-32  Score=240.77  Aligned_cols=147  Identities=20%  Similarity=0.304  Sum_probs=130.0

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCCCCCC---
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPPPPP---   76 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~~~~~---   76 (365)
                      +||+.||||||++++. |.|++ .+.||+|.+.|++.|+|+|..++.| .|+|||+|||+||+.||+.|.....+..   
T Consensus        14 n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~sKK~Aeq~AA~~al~~L~~~~~~~~p~~   91 (179)
T 1qu6_A           14 FFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEG-EGRSKKEAKNAAAKLAVEILNKEKKAVSPLL   91 (179)
T ss_dssp             SHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEE-ECCSSHHHHHHHHHHHHHHHHSCCSCCSCSS
T ss_pred             CHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEec-CCCCHHHHHHHHHHHHHHHHhcccccCCCcc
Confidence            5899999999999987 89998 6789999999999999999988886 9999999999999999999976432100   


Q ss_pred             --------CCCccCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHH
Q 038761           77 --------PNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFS  148 (365)
Q Consensus        77 --------~~~~~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~  148 (365)
                              .....+|+++||||||++++.+ .|++...|++|.+.|+++|+|+|..+. .|.|+|||+||+.||+.||..
T Consensus        92 ~~~~~~~e~~~~~n~~~~L~E~~qk~~~~~-~Y~~~~~G~~h~~~F~~~v~v~~~~~~-~g~g~sKK~Ak~~AA~~al~~  169 (179)
T 1qu6_A           92 LTTTNSSEGLSMGNYIGLINRIAQKKRLTV-NYEQCASGVHGPEGFHYKCKMGQKEYS-IGTGSTKQEAKQLAAKLAYLQ  169 (179)
T ss_dssp             CCCSCSSCCCCCCCCHHHHHHHHHHSCCEE-EEEEEEECSSSSSEEEEEEEEETTBCC-EEEESSHHHHHHHHHHHHHHH
T ss_pred             CCCCCcccccCCCCHHHHHHHHHHhcCCcc-eEEecCcCCCCCCeEEEEEEECCEEEe-eEEECCHHHHHHHHHHHHHHH
Confidence                    1245789999999999999976 799888999999999999999999864 467999999999999999999


Q ss_pred             hcc
Q 038761          149 LAC  151 (365)
Q Consensus       149 L~~  151 (365)
                      |..
T Consensus       170 L~~  172 (179)
T 1qu6_A          170 ILS  172 (179)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            953

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1

Probab=99.97  E-value=1.6e-30  Score=232.72  Aligned_cols=161  Identities=23%  Similarity=0.265  Sum_probs=134.4

Q ss_pred             ccCcHHHHHHHHHHcCCCCCceeee-ccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhhhH
Q 038761           80 QCRYKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAI  158 (365)
Q Consensus        80 ~~~~~s~L~E~~qk~~l~~P~Y~~~-~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~~~  158 (365)
                      ..+|++.||||||++++. |.|+++ ..||+|.+.|++.|.|+|..+. .|.|+|||+|++.||+.||..|...+... .
T Consensus        12 ~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~-~G~G~sKK~Aeq~AA~~al~~L~~~~~~~-~   88 (179)
T 1qu6_A           12 AGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFP-EGEGRSKKEAKNAAAKLAVEILNKEKKAV-S   88 (179)
T ss_dssp             SCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCC-EEECCSSHHHHHHHHHHHHHHHHSCCSCC-S
T ss_pred             CCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEE-ecCCCCHHHHHHHHHHHHHHHHhcccccC-C
Confidence            368999999999999986 899987 6899999999999999998874 36899999999999999999996543210 0


Q ss_pred             HHhhhhc-ccccCCCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHH
Q 038761          159 FLYAHVS-MYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAY  237 (365)
Q Consensus       159 ~~~~~l~-~~~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL  237 (365)
                      +...... ........||+++|+||||+++|.+ .|++.+.|+.|.+.|+++|+|+|..++.|.|.|||+||++||+.||
T Consensus        89 p~~~~~~~~~e~~~~~n~~~~L~E~~qk~~~~~-~Y~~~~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al  167 (179)
T 1qu6_A           89 PLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTV-NYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAY  167 (179)
T ss_dssp             CSSCCCSCSSCCCCCCCCHHHHHHHHHHSCCEE-EEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHH
T ss_pred             CccCCCCCcccccCCCCHHHHHHHHHHhcCCcc-eEEecCcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHH
Confidence            0000000 0112245799999999999999987 9999899999999999999999988899999999999999999999


Q ss_pred             HHHHhhc
Q 038761          238 TALIERK  244 (365)
Q Consensus       238 ~~L~~~~  244 (365)
                      ..|....
T Consensus       168 ~~L~~~~  174 (179)
T 1qu6_A          168 LQILSEE  174 (179)
T ss_dssp             HHHHHCC
T ss_pred             HHHhccc
Confidence            9997653

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}

Probab=99.95  E-value=1.6e-27  Score=221.50  Aligned_cols=143  Identities=17%  Similarity=0.139  Sum_probs=118.0

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCCCC--CC-
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPPP--PP-   76 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~~~--~~-   76 (365)
                      +||+.||||||++++.+|.|++ .+.||+  +.|+|.|+|+|..++.| .|+|||+|||+||+.||..|....+.  +. 
T Consensus        23 d~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G-~G~SKK~Aeq~AA~~aL~~L~~~~~~~~~~~   99 (232)
T 2yt4_A           23 SEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSG-TASSKKLAKNKAARATLEILIPDFVKQTSEE   99 (232)
T ss_dssp             CHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHSTTTTTC----
T ss_pred             CHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeec-CCCCHHHHHHHHHHHHHHHHHhhccccCCcc
Confidence            5899999999999999999999 678988  99999999999999886 99999999999999999999763110  00 


Q ss_pred             ------------------C--------CCccCcHHHHHHHHHHcCCCCCcee--ee-ccCCCCCcceEEEEEEcCeEEEe
Q 038761           77 ------------------P--------NVQCRYKSVLQNYARRKNLDSPLYS--SI-REGPAHACSFKARVTIDGHTFES  127 (365)
Q Consensus        77 ------------------~--------~~~~~~~s~L~E~~qk~~l~~P~Y~--~~-~~Gp~h~~~F~~~v~I~g~~~~~  127 (365)
                                        +        ....+|++.||| |+++++++|.|+  ++ ..|++|.+.|+++|.  +...  
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~--~~~~--  174 (232)
T 2yt4_A          100 KPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG--KHTV--  174 (232)
T ss_dssp             ----CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET--TEEE--
T ss_pred             ccccccchhhcccccccCCcccccccccCCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE--EEEE--
Confidence                              0        123588999999 999999999998  55 689999999998887  4443  


Q ss_pred             ccccccHHHHHHHHHHHHHHHhcc
Q 038761          128 LEFFKNLKQAEHAAAKVALFSLAC  151 (365)
Q Consensus       128 ~g~g~sKK~AK~~AA~~aL~~L~~  151 (365)
                      .|.|+|||+||+.||+.||..|..
T Consensus       175 ~G~G~sKK~Aeq~AA~~aL~~L~~  198 (232)
T 2yt4_A          175 RGWCKNKRVGKQLASQKILQLLHP  198 (232)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHHST
T ss_pred             EEEeCCHHHHHHHHHHHHHHHHHh
Confidence            468999999999999999999963

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}

Probab=99.94  E-value=1.3e-26  Score=215.46  Aligned_cols=163  Identities=21%  Similarity=0.160  Sum_probs=126.0

Q ss_pred             CccCcHHHHHHHHHHcCCCCCceeee-ccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhh-
Q 038761           79 VQCRYKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQE-  156 (365)
Q Consensus        79 ~~~~~~s~L~E~~qk~~l~~P~Y~~~-~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~-  156 (365)
                      ...+|++.||||||++++..|.|+++ ..||+  +.|++.|.|+|..+.. |.|+|||+|++.||+.||..|... +.. 
T Consensus        20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~-G~G~SKK~Aeq~AA~~aL~~L~~~-~~~~   95 (232)
T 2yt4_A           20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGS-GTASSKKLAKNKAARATLEILIPD-FVKQ   95 (232)
T ss_dssp             TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEE-EEESSHHHHHHHHHHHHHHHHSTT-TTTC
T ss_pred             CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEee-cCCCCHHHHHHHHHHHHHHHHHhh-cccc
Confidence            56799999999999999999999997 57887  8999999999998864 689999999999999999999653 111 


Q ss_pred             hHH----------Hhhhhc--cc------ccCCCcchhhHHHHHHHhcCCCCCeEE--EE-eeCCCCCCeEEEEEEECCE
Q 038761          157 AIF----------LYAHVS--MY------LWDDGVFYKNVLHELSLREGLPVPLYE--TI-KCGAPHMPTFISMVEVDGE  215 (365)
Q Consensus       157 ~~~----------~~~~l~--~~------~~~~~~n~ks~LqE~~qk~~~~~P~Y~--~~-~~Gp~h~~~F~~~V~i~g~  215 (365)
                      ...          ....+.  +.      ......|||++||| |+++++.+|.|+  +. +.||.|.+.|+++|.  + 
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~--~-  171 (232)
T 2yt4_A           96 TSEEKPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG--K-  171 (232)
T ss_dssp             --------CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET--T-
T ss_pred             CCccccccccchhhcccccccCCcccccccccCCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE--E-
Confidence            000          000000  00      01234699999999 999999999999  44 789999999999886  4 


Q ss_pred             EEeeEeccCHHHHHHHHHHHHHHHHHhhcccCCC
Q 038761          216 VFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSL  249 (365)
Q Consensus       216 ~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~~~~~~  249 (365)
                      .++.|.|.|||+||+.||+.||..|....+.+.+
T Consensus       172 ~~~~G~G~sKK~Aeq~AA~~aL~~L~~~~~~~~~  205 (232)
T 2yt4_A          172 HTVRGWCKNKRVGKQLASQKILQLLHPHVKNWGS  205 (232)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHHSTTCCBHHH
T ss_pred             EEEEEEeCCHHHHHHHHHHHHHHHHHhhccchhH
Confidence            5679999999999999999999999876555544

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}

Probab=99.92  E-value=1.9e-24  Score=201.39  Aligned_cols=140  Identities=28%  Similarity=0.292  Sum_probs=119.0

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCCC------
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPP------   73 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~~------   73 (365)
                      ++|+.|++|++.  +.+|.|++ .+.||+|.+.|+++|+|+|..+ .| .|+|||+|||+||+.||+.|...+.      
T Consensus         5 ~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G-~G~SKK~Aeq~AA~~al~~l~~~~~~~~~~~   80 (236)
T 2l3j_A            5 LPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EG-SGPTKKKAKLHAAEKALRSFVQFPNASEAHL   80 (236)
T ss_dssp             CTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-EE-EESHHHHHHHHHHHHHHHHHTTCSSCSCCCC
T ss_pred             CCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEE-EE-ecCChHHHHHHHHHHHHHHHHhccccccchh
Confidence            589999999987  46789999 6789999999999999999986 65 9999999999999999998865210      


Q ss_pred             ------CC--------------------C-----------------------------------------------CCCc
Q 038761           74 ------PP--------------------P-----------------------------------------------PNVQ   80 (365)
Q Consensus        74 ------~~--------------------~-----------------------------------------------~~~~   80 (365)
                            ++                    +                                               +...
T Consensus        81 amg~~~~~~~d~~~d~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~  160 (236)
T 2l3j_A           81 AMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPPSG  160 (236)
T ss_dssp             SCCCCCCCTTSCCSCCSCCCCCCCCCCCCSSSSCCCSSCSSSCSSSSSCSCCCSSCCCCCCCCSSSCSSSSCCCCCCCSS
T ss_pred             hhccCCCCCCCCcccccccchhhcccccccccccccccccccccccccccchhhccccccccccccccCccccccCCCCC
Confidence                  00                    0                                               0023


Q ss_pred             cCcHHHHHHHHHHcCCCCCceeee-ccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhcc
Q 038761           81 CRYKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLAC  151 (365)
Q Consensus        81 ~~~~s~L~E~~qk~~l~~P~Y~~~-~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~  151 (365)
                      .+|++.||||     ...|.|+++ ..|++|.+.|+++|.|+|..+  .|.|+|||+|++.||+.||..|..
T Consensus       161 ~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~--~G~G~sKK~Aeq~AA~~al~~L~~  225 (236)
T 2l3j_A          161 KNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF--EGSGRNKKLAKARAAQSALATVFN  225 (236)
T ss_dssp             CCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE--EEEESSHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE--EeeeCCHHHHHHHHHHHHHHHHcc
Confidence            5899999999     457899987 689999999999999999987  368999999999999999999963

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}

Probab=99.90  E-value=2.3e-23  Score=194.01  Aligned_cols=153  Identities=28%  Similarity=0.318  Sum_probs=120.2

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeee-ccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCCh-----
Q 038761           81 CRYKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDF-----  154 (365)
Q Consensus        81 ~~~~s~L~E~~qk~~l~~P~Y~~~-~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~-----  154 (365)
                      .++++.|+++++..  ..|.|+++ ..||+|.+.|+++|.|+|..+  .|.|+|||+|++.||+.||..|.....     
T Consensus         4 ~~~K~~l~~l~e~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~--~G~G~SKK~Aeq~AA~~al~~l~~~~~~~~~~   79 (236)
T 2l3j_A            4 VLPKNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQVF--EGSGPTKKKAKLHAAEKALRSFVQFPNASEAH   79 (236)
T ss_dssp             CCTHHHHHHHHHHC--SSCEEEEEEEESCTTSCEEEEEEEETTEEE--EEEESHHHHHHHHHHHHHHHHHTTCSSCSCCC
T ss_pred             CCCcCHHHHHhhcC--CCceEEEEeccCCCCCCeEEEEEEECCEEE--EEecCChHHHHHHHHHHHHHHHHhccccccch
Confidence            46778888877653  47899987 579999999999999999987  368999999999999999999864210     


Q ss_pred             -------h-hhHH----------Hhh---------h-------------------h----------ccc-------ccCC
Q 038761          155 -------Q-EAIF----------LYA---------H-------------------V----------SMY-------LWDD  171 (365)
Q Consensus       155 -------~-~~~~----------~~~---------~-------------------l----------~~~-------~~~~  171 (365)
                             . ...+          +..         .                   +          ...       ....
T Consensus        80 ~amg~~~~~~~d~~~d~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~  159 (236)
T 2l3j_A           80 LAMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPPS  159 (236)
T ss_dssp             CSCCCCCCCTTSCCSCCSCCCCCCCCCCCCSSSSCCCSSCSSSCSSSSSCSCCCSSCCCCCCCCSSSCSSSSCCCCCCCS
T ss_pred             hhhccCCCCCCCCcccccccchhhcccccccccccccccccccccccccccchhhccccccccccccccCccccccCCCC
Confidence                   0 0000          000         0                   0          000       0013


Q ss_pred             CcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761          172 GVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER  243 (365)
Q Consensus       172 ~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~  243 (365)
                      ..|||++||||     +..|.|+++ +.||.|.++|++.|.|+|..+ .|.|.|||+|||+||+.||..|...
T Consensus       160 ~~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~sKK~Aeq~AA~~al~~L~~~  226 (236)
T 2l3j_A          160 GKNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL  226 (236)
T ss_dssp             SCCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHccc
Confidence            47999999999     578999987 789999999999999999876 9999999999999999999999753

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1

Probab=99.82  E-value=1.9e-20  Score=141.87  Aligned_cols=67  Identities=28%  Similarity=0.447  Sum_probs=63.8

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFT   69 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~   69 (365)
                      |||+.||||||++++.+|.|++ .++||+|.+.|+|.|+|+|. ++.| .|+|||+|||.||+.||..|.
T Consensus         1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G-~G~sKK~Aeq~AA~~al~~L~   68 (69)
T 1di2_A            1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETG-SGTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEe-ecCCHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999998 77899999999999999998 8886 999999999999999999875

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A

Probab=99.81  E-value=8.2e-20  Score=139.85  Aligned_cols=68  Identities=25%  Similarity=0.517  Sum_probs=64.1

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEEeecccc-cCcchHHHHHHHHHHHhcC
Q 038761            1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSC-KSSKESQNDAAKLAFLHFT   69 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~gg~g-~SKK~Aeq~AA~~AL~~L~   69 (365)
                      +||+.||||||++++.+|.|++..+||+|++.|+|.|+|+|..++.| .| +|||+|||+||+.||..|.
T Consensus         4 d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~~sKK~Aeq~AA~~al~~L~   72 (73)
T 3adg_A            4 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSL-PGFFNRKAAEQSAAEVALRELA   72 (73)
T ss_dssp             SHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECC-SCBSSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEee-eccCCHHHHHHHHHHHHHHHhh
Confidence            69999999999999999999995569999999999999999999886 99 9999999999999999885

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A

Probab=99.80  E-value=7.9e-20  Score=141.05  Aligned_cols=69  Identities=19%  Similarity=0.434  Sum_probs=65.0

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +||+.||||||++++.+|.|++ .+.||+|.+.|+|.|+|+|..++.| .|+|||+|||+||+.||..|..
T Consensus         5 n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~sKK~Aeq~AA~~al~~L~~   74 (76)
T 3adj_A            5 LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGA-ATRTKKDAEISAGRTALLAIQS   74 (76)
T ss_dssp             HHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECC-CBSSHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEe-ccCCHHHHHHHHHHHHHHHHhh
Confidence            5899999999999999999999 6789999999999999999999886 9999999999999999998864

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A

Probab=99.78  E-value=5.7e-19  Score=135.12  Aligned_cols=70  Identities=36%  Similarity=0.511  Sum_probs=66.7

Q ss_pred             CcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCEEEeeEec-cCHHHHHHHHHHHHHHHHH
Q 038761          172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAG-RTKKKAEMKAAKVAYTALI  241 (365)
Q Consensus       172 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~~~~~G~G-~SKK~Ae~~AA~~aL~~L~  241 (365)
                      ..|||+.||||||++++..|.|+++++||.|.+.|++.|.|+|..++.|.| .|||+||++||+.||..|.
T Consensus         2 ~~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~   72 (73)
T 3adg_A            2 SHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA   72 (73)
T ss_dssp             CCSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence            369999999999999999999999977999999999999999999999999 9999999999999999885

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}

Probab=99.78  E-value=1e-18  Score=138.49  Aligned_cols=76  Identities=24%  Similarity=0.268  Sum_probs=68.7

Q ss_pred             cCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhhcc
Q 038761          169 WDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKL  245 (365)
Q Consensus       169 ~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~~  245 (365)
                      .....|||+.||||||+++++.|.|+++ +.||.|.+.|++.|.|+|. ++.|.|.|||+||++||+.||..|...++
T Consensus        11 ~~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~p~   87 (88)
T 3adl_A           11 VPRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHTVPL   87 (88)
T ss_dssp             CCTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC---
T ss_pred             CCCCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHccCC
Confidence            3456799999999999999999999987 7899999999999999997 89999999999999999999999987653

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}

Probab=99.78  E-value=3.4e-19  Score=141.30  Aligned_cols=69  Identities=28%  Similarity=0.407  Sum_probs=64.5

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP   71 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~   71 (365)
                      +||+.||||||++++.+|.|++ .++||+|.+.|+|.|+|+|. ++.| .|+|||+|||+||+.||+.|...
T Consensus        16 d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G-~G~SKK~Aeq~AA~~AL~~L~~~   85 (88)
T 3adl_A           16 HEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIG-SGTSKKLAKRNAAAKMLLRVHTV   85 (88)
T ss_dssp             CHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEE-eeCCHHHHHHHHHHHHHHHHHcc
Confidence            6899999999999999999999 67899999999999999998 8886 99999999999999999999764

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A

Probab=99.78  E-value=5.2e-19  Score=136.46  Aligned_cols=71  Identities=31%  Similarity=0.436  Sum_probs=67.5

Q ss_pred             CcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHh
Q 038761          172 GVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE  242 (365)
Q Consensus       172 ~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~  242 (365)
                      ..|||+.||||||++++..|.|+++ +.||.|.+.|++.|.|+|..++.|.|.|||+||+.||+.||..|..
T Consensus         3 ~~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~   74 (76)
T 3adj_A            3 HGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS   74 (76)
T ss_dssp             CHHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence            4699999999999999999999987 7899999999999999999999999999999999999999999964

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}

Probab=99.77  E-value=5e-19  Score=139.44  Aligned_cols=69  Identities=22%  Similarity=0.281  Sum_probs=64.1

Q ss_pred             ChHHHHHHHHHh-----cCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQ-----KRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk-----~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +||+.||||||+     +++.+|.|++ .++||+|++.|+|.|+|+|..++.| .|+|||+|||+||+.||..|..
T Consensus         2 d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G-~G~SKK~AEq~AA~~AL~~L~~   76 (85)
T 2khx_A            2 DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCG-KGPSIQQAEMGAAMDALEKYNF   76 (85)
T ss_dssp             CSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCE-EESSHHHHHHHHHHHHHTTCCS
T ss_pred             CHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEE-eeCCHHHHHHHHHHHHHHHHhH
Confidence            699999999998     4678999999 6789999999999999999999886 9999999999999999999865

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.77  E-value=9.5e-19  Score=138.99  Aligned_cols=69  Identities=14%  Similarity=0.200  Sum_probs=64.6

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP   71 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~   71 (365)
                      +||+.||||||++++.+|.|++ .+.||+|++.|+|.|+|+|. ++.| .|+|||+|||+||+.||+.|...
T Consensus         7 d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G-~G~SKK~Aeq~AA~~AL~~L~~~   76 (89)
T 1uhz_A            7 GPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATG-TGPNKKIAKKNAAEAMLLQLGYK   76 (89)
T ss_dssp             CHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHTSS
T ss_pred             CHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEE-eeCCHHHHHHHHHHHHHHHHhcc
Confidence            6999999999999999999999 67899999999999999997 7786 99999999999999999999763

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1

Probab=99.77  E-value=1.7e-18  Score=131.04  Aligned_cols=66  Identities=26%  Similarity=0.349  Sum_probs=63.4

Q ss_pred             hhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHH
Q 038761          175 YKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALI  241 (365)
Q Consensus       175 ~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~  241 (365)
                      ||+.||||||++++..|.|+++ ++||+|.+.|++.|.|+|. ++.|.|.|||+||+.||+.||..|.
T Consensus         2 p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~   68 (69)
T 1di2_A            2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence            7899999999999999999986 7899999999999999998 9999999999999999999999986

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.77  E-value=8.8e-19  Score=139.19  Aligned_cols=68  Identities=28%  Similarity=0.419  Sum_probs=64.3

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +||+.||||||++++.+|.|++ .+.||+|.+.|+|.|+|+|. ++.| .|+|||+|||.||+.||..|..
T Consensus        17 d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G-~G~SKK~Aeq~AA~~AL~~L~~   85 (89)
T 2cpn_A           17 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIG-SGTSKKLAKRNAAAKMLLRVSG   85 (89)
T ss_dssp             CHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEe-eeCCHHHHHHHHHHHHHHHHHh
Confidence            6899999999999999999998 77899999999999999998 8886 9999999999999999999865

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.76  E-value=4.2e-18  Score=135.29  Aligned_cols=73  Identities=22%  Similarity=0.246  Sum_probs=68.2

Q ss_pred             CCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761          170 DDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER  243 (365)
Q Consensus       170 ~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~  243 (365)
                      ....|||++||||||++++.+|.|+++ +.||.|.+.|++.|.|+|. ++.|.|.|||+||+.||+.||..|...
T Consensus        13 ~~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~   86 (89)
T 2cpn_A           13 QSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSGP   86 (89)
T ss_dssp             CCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence            346799999999999999999999986 7899999999999999998 899999999999999999999999753

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A

Probab=99.76  E-value=6.6e-19  Score=135.81  Aligned_cols=67  Identities=15%  Similarity=0.234  Sum_probs=62.8

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +||+.||||||++++. |.|++ .++||+|.+.|+|.|+|+| .++.| .|+|||+|||.||+.||..|..
T Consensus         8 d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G-~G~sKK~Aeq~AA~~aL~~L~~   75 (76)
T 1ekz_A            8 SPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEG-EGNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEE-CCCSTTSSSHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEE-eeCCHHHHHHHHHHHHHHHHhh
Confidence            5899999999999999 99998 7789999999999999999 78886 9999999999999999998864

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.75  E-value=2.6e-18  Score=135.06  Aligned_cols=67  Identities=21%  Similarity=0.218  Sum_probs=62.5

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +||+.||||||+++ ..|.|++ .+.||+|.+.|+|.|+|+| .++.| .|+|||+|||+||+.||+.|..
T Consensus         9 d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G-~G~SKK~Aeq~AA~~aL~~L~~   76 (84)
T 2dix_A            9 TPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTG-EGTSKKLAKHRAAEAAINILKA   76 (84)
T ss_dssp             CHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEE-CSSCTTHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEe-eeCCHHHHHHHHHHHHHHHHhc
Confidence            68999999999998 6899999 6789999999999999999 78886 9999999999999999999864

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.74  E-value=9.3e-18  Score=133.26  Aligned_cols=70  Identities=23%  Similarity=0.185  Sum_probs=66.3

Q ss_pred             CcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHh
Q 038761          172 GVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE  242 (365)
Q Consensus       172 ~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~  242 (365)
                      ..|||++||||||++++..|.|+++ +.||.|.+.|++.|.|+|. ++.|.|.|||+||++||+.||..|..
T Consensus         5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~   75 (89)
T 1uhz_A            5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLGY   75 (89)
T ss_dssp             SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999987 7899999999999999996 89999999999999999999999964

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}

Probab=99.74  E-value=2.6e-18  Score=140.06  Aligned_cols=69  Identities=25%  Similarity=0.510  Sum_probs=64.2

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEEeecccc-cCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSC-KSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~gg~g-~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +||+.||||||++++.+|.|++..+||+|++.|+|.|+|+|..++.| .| +|||+|||+||+.||..|..
T Consensus        18 d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G-~G~~SKK~Aeq~AA~~AL~~L~~   87 (103)
T 2l2n_A           18 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSL-PGFFNRKAAEQSAAEVALRELAK   87 (103)
T ss_dssp             -CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECC-SCBSSHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEe-ecCCCHHHHHHHHHHHHHHHHhc
Confidence            68999999999999999999995569999999999999999999886 99 99999999999999999865

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.74  E-value=1.2e-17  Score=131.29  Aligned_cols=71  Identities=31%  Similarity=0.389  Sum_probs=66.2

Q ss_pred             CCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761          171 DGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER  243 (365)
Q Consensus       171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~  243 (365)
                      ...|||+.||||||+++ ..|.|+++ +.||.|.+.|++.|.|+| .++.|.|.|||+||++||+.||..|...
T Consensus         6 ~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~~   77 (84)
T 2dix_A            6 SGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKAN   77 (84)
T ss_dssp             CCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhcc
Confidence            45799999999999998 68999987 789999999999999999 8899999999999999999999999754

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A

Probab=99.74  E-value=2.8e-18  Score=131.26  Aligned_cols=67  Identities=28%  Similarity=0.308  Sum_probs=61.6

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP   71 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~   71 (365)
                      +||+.||||||+  +.+|.|++ .++||+|++.|++.|.|+|..+ .| .|+|||+|||+||+.||+.|...
T Consensus         5 d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G-~G~SKK~Aeq~AA~~al~~L~~~   72 (73)
T 2b7t_A            5 LPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EG-SGPTKKKAKLHAAEKALRSFVQF   72 (73)
T ss_dssp             SSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EE-EESSHHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-Ee-ecCCHHHHHHHHHHHHHHHHhcC
Confidence            689999999996  67899999 7789999999999999999987 75 99999999999999999998753

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}

Probab=99.73  E-value=1.1e-17  Score=136.33  Aligned_cols=76  Identities=33%  Similarity=0.469  Sum_probs=67.1

Q ss_pred             CCCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCEEEeeEec-cCHHHHHHHHHHHHHHHHHhhcc
Q 038761          170 DDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAG-RTKKKAEMKAAKVAYTALIERKL  245 (365)
Q Consensus       170 ~~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~~~~~G~G-~SKK~Ae~~AA~~aL~~L~~~~~  245 (365)
                      ....|||+.||||||++++.+|.|+++++||.|.+.|++.|.|+|..++.|.| .|||+||++||+.||..|...+.
T Consensus        14 ~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~~   90 (103)
T 2l2n_A           14 SNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSSE   90 (103)
T ss_dssp             -----CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhcccc
Confidence            45689999999999999999999999977999999999999999999999999 99999999999999999986543

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}

Probab=99.73  E-value=6.1e-18  Score=134.61  Aligned_cols=68  Identities=24%  Similarity=0.302  Sum_probs=56.6

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP   71 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~   71 (365)
                      +||+.||||||+++. .|.|++ .++||+|++.|+|.|+|+|. ++.| .|+|||+|||.||+.||+.|...
T Consensus        15 d~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G-~G~SKK~Aeq~AA~~aL~~L~~~   83 (90)
T 3llh_A           15 TPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTG-QGPSKKAAKHKAAEVALKHLKGG   83 (90)
T ss_dssp             CHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEE-EeCCHHHHHHHHHHHHHHHHHhc
Confidence            689999999999985 799998 78999999999999999998 5676 99999999999999999999764

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}

Probab=99.73  E-value=4.2e-18  Score=134.12  Aligned_cols=70  Identities=29%  Similarity=0.295  Sum_probs=65.0

Q ss_pred             cchhhHHHHHHHh-----cCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHh
Q 038761          173 VFYKNVLHELSLR-----EGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE  242 (365)
Q Consensus       173 ~n~ks~LqE~~qk-----~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~  242 (365)
                      .|||+.||||||+     +++..|.|+++ +.||+|.+.|++.|.|+|..++.|.|.|||+||++||+.||..|..
T Consensus         1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~   76 (85)
T 2khx_A            1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNF   76 (85)
T ss_dssp             CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCS
T ss_pred             CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhH
Confidence            4899999999998     46789999987 7899999999999999999999999999999999999999998854

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.72  E-value=3.6e-18  Score=137.77  Aligned_cols=70  Identities=26%  Similarity=0.361  Sum_probs=64.7

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPP   72 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~   72 (365)
                      +||+.||||||++++. |.|++ .+.||+|.+.|+|.|+|+|..++.| .|+|||+|||.||+.||+.|....
T Consensus        15 n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~~   85 (97)
T 1x49_A           15 FYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEA-KGRSKQEARNAAAKLAVDILDNEN   85 (97)
T ss_dssp             HHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCE-EESSHHHHHHHHHHHHHHHHTTTC
T ss_pred             CHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEE-eeCCHHHHHHHHHHHHHHHHHhhc
Confidence            4899999999999997 79998 6789999999999999999998886 999999999999999999998643

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.72  E-value=1.2e-17  Score=134.67  Aligned_cols=72  Identities=29%  Similarity=0.408  Sum_probs=67.6

Q ss_pred             CCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761          171 DGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER  243 (365)
Q Consensus       171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~  243 (365)
                      ...|||++||||||++++. |.|+++ +.||.|.+.|++.|.|+|..++.|.|.|||+|||+||+.||..|...
T Consensus        12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~   84 (97)
T 1x49_A           12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNE   84 (97)
T ss_dssp             CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhh
Confidence            5689999999999999997 799976 78999999999999999998999999999999999999999999754

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A

Probab=99.72  E-value=3.1e-18  Score=138.60  Aligned_cols=68  Identities=19%  Similarity=0.230  Sum_probs=63.5

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECC-EEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNG-LSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g-~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +||+.||||||++ +.+|.|++.+.||+|.+.|+|.|+|+| ..++.| .|+|||+|||+||+.||+.|..
T Consensus         7 d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~   75 (99)
T 1whq_A            7 GIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMG-NSTNKKDAQSNAARDFVNYLVR   75 (99)
T ss_dssp             SSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEE-EESSHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEe-ccCCHHHHHHHHHHHHHHHHHh
Confidence            6899999999999 889999997789999999999999999 688886 9999999999999999999864

>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.72  E-value=5.6e-18  Score=134.28  Aligned_cols=69  Identities=22%  Similarity=0.329  Sum_probs=64.1

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEeeecCCCCCC-cEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDP-RFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPP   72 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~-~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~   72 (365)
                      +||+.||||||++++.+ .|+ .+.||+|.+ .|+|.|+|+|..++.| .|+|||+|||+||+.||+.|...+
T Consensus         7 d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~~   76 (88)
T 1x48_A            7 GYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTG-SGVTKQEAKQLAAKEAYQKLLKSP   76 (88)
T ss_dssp             CHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEE-EESSHHHHHHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEe-ecCCHHHHHHHHHHHHHHHHHhcC
Confidence            69999999999999976 999 788999999 7999999999999886 999999999999999999997653

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A

Probab=99.72  E-value=3.1e-18  Score=132.05  Aligned_cols=70  Identities=21%  Similarity=0.342  Sum_probs=65.9

Q ss_pred             CCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHh
Q 038761          171 DGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE  242 (365)
Q Consensus       171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~  242 (365)
                      ...|||+.||||||++++. |.|+++ +.||.|.+.|++.|.|+| .++.|.|.|||+||+.||+.||..|..
T Consensus         5 ~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~~   75 (76)
T 1ekz_A            5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence            4579999999999999999 999987 789999999999999999 889999999999999999999999864

>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.71  E-value=4.4e-17  Score=129.09  Aligned_cols=74  Identities=24%  Similarity=0.335  Sum_probs=67.6

Q ss_pred             CCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCC-eEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhhccc
Q 038761          171 DGVFYKNVLHELSLREGLPVPLYETIKCGAPHMP-TFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLI  246 (365)
Q Consensus       171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~-~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~~~  246 (365)
                      ...|||++||||||++++.+ .|+ .+.||.|.+ +|++.|.|+|..++.|.|.|||+|||.||+.||..|...++.
T Consensus         4 ~~~d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~   78 (88)
T 1x48_A            4 GSSGYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPK   78 (88)
T ss_dssp             SSSCHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            34699999999999999976 999 888999999 799999999999999999999999999999999999876433

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A

Probab=99.71  E-value=2.5e-17  Score=125.94  Aligned_cols=69  Identities=38%  Similarity=0.527  Sum_probs=63.8

Q ss_pred             CcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761          172 GVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER  243 (365)
Q Consensus       172 ~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~  243 (365)
                      ..|||+.||||||+  +..|.|+++ +.||.|.+.|++.|.|+|..+ .|.|.|||+||++||+.||..|...
T Consensus         3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~   72 (73)
T 2b7t_A            3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQF   72 (73)
T ss_dssp             SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhcC
Confidence            46999999999995  789999986 789999999999999999887 9999999999999999999999753

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A

Probab=99.70  E-value=2.7e-17  Score=133.05  Aligned_cols=72  Identities=24%  Similarity=0.209  Sum_probs=67.4

Q ss_pred             CcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECC-EEEeeEeccCHHHHHHHHHHHHHHHHHhhc
Q 038761          172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDG-EVFYGKAGRTKKKAEMKAAKVAYTALIERK  244 (365)
Q Consensus       172 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g-~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~  244 (365)
                      ..|||++||||||++ +..|.|++.+.||.|.++|+|.|.|+| ..++.|.|.|||+|||+||+.||..|....
T Consensus         5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~   77 (99)
T 1whq_A            5 SSGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRIN   77 (99)
T ss_dssp             CCSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhC
Confidence            369999999999999 889999998889999999999999999 688999999999999999999999998753

>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1

Probab=99.70  E-value=6.8e-18  Score=134.70  Aligned_cols=66  Identities=18%  Similarity=0.059  Sum_probs=60.4

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCE-EEeecccccCcchHHHHHHHHHHHhc
Q 038761            1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGL-SFHSSVSCKSSKESQNDAAKLAFLHF   68 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~-~~~~gg~g~SKK~Aeq~AA~~AL~~L   68 (365)
                      +|||.||||||+++ .+|.|++...||+|++.|++.|.|+|. .++.| .|+|||+|||+||+.||..|
T Consensus         7 D~KT~LQE~~Q~~~-~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G-~G~SKK~AEQ~AA~~AL~~l   73 (94)
T 1t4n_A            7 NAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTG-VGRNIKIAGIRAAENALRDK   73 (94)
T ss_dssp             HHHHHHHHHTCSSS-SCCEEEECCCCSSSCCSEEEEEECSSSCEEEEE-EESSHHHHHHHHHHHHHHCH
T ss_pred             CchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEE-EeCCHHHHHHHHHHHHHHHH
Confidence            58999999999974 689999955699999999999999998 88886 99999999999999999865

>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A

Probab=99.70  E-value=5.9e-17  Score=134.12  Aligned_cols=80  Identities=20%  Similarity=0.204  Sum_probs=70.5

Q ss_pred             CcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEE-----CCEEEeeEeccCHHHHHHHHHHHHHHHHHhhccc
Q 038761          172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEV-----DGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLI  246 (365)
Q Consensus       172 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i-----~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~~~  246 (365)
                      ..|||++||||||++++ .|.|++.+.||.|.+.|++.|.|     +|..++.|.|.|||+|||.||+.||..|...  .
T Consensus        25 ~~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~--~  101 (113)
T 1uil_A           25 LENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHL--G  101 (113)
T ss_dssp             HHHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHH--T
T ss_pred             cCCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhc--C
Confidence            36999999999999999 99999778999999999999999     6888999999999999999999999999865  3


Q ss_pred             CCCCCCCC
Q 038761          247 FSLPFHGG  254 (365)
Q Consensus       247 ~~~p~~~~  254 (365)
                      ...+++|.
T Consensus       102 ~ie~~~g~  109 (113)
T 1uil_A          102 VIEAYSSG  109 (113)
T ss_dssp             SSCCCCCS
T ss_pred             CcccccCC
Confidence            44455444

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}

Probab=99.70  E-value=5e-17  Score=129.33  Aligned_cols=72  Identities=32%  Similarity=0.403  Sum_probs=59.0

Q ss_pred             CCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761          170 DDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER  243 (365)
Q Consensus       170 ~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~  243 (365)
                      ....|||+.||||||+++. .|.|+++ +.||.|.+.|++.|.|+|. ++.|.|.|||+||+.||+.||..|...
T Consensus        11 ~~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~L~~~   83 (90)
T 3llh_A           11 NPGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKHLKGG   83 (90)
T ss_dssp             --CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC--
T ss_pred             ccCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHHHHhc
Confidence            3568999999999999875 7999986 8899999999999999997 689999999999999999999999764

>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A

Probab=99.70  E-value=2e-17  Score=137.01  Aligned_cols=68  Identities=13%  Similarity=0.208  Sum_probs=62.9

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEE-----CCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSV-----NGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v-----~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +||+.||||||++++ +|.|++.+.||+|.+.|+|.|+|     +|..++.| .|+|||+|||+||+.||+.|..
T Consensus        27 d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G-~G~SKK~AEq~AA~~AL~~L~~   99 (113)
T 1uil_A           27 NAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFARE-HGSNKKLAAQSCALSLVRQLYH   99 (113)
T ss_dssp             HHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEEC-CCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEE-eeCCHHHHHHHHHHHHHHHHHh
Confidence            489999999999999 99999878899999999999999     68888886 9999999999999999998754

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.69  E-value=3.8e-17  Score=131.78  Aligned_cols=67  Identities=22%  Similarity=0.295  Sum_probs=61.9

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP   71 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~   71 (365)
                      +||+.||||||++  .+|.|++ .+.||+|++.|++.|+|+|..+ .| .|+|||+|||+||+.||..|..+
T Consensus        17 d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G-~G~SKK~Aeq~AA~~aL~~L~~~   84 (97)
T 2dmy_A           17 DLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EA-SGPSKKTAKLHVAVKVLQAMGYP   84 (97)
T ss_dssp             SCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EE-eeCCHHHHHHHHHHHHHHHhCCC
Confidence            6899999999996  6899999 6689999999999999999998 75 99999999999999999999763

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.69  E-value=1.3e-16  Score=128.92  Aligned_cols=75  Identities=25%  Similarity=0.242  Sum_probs=68.1

Q ss_pred             CCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhhcccC
Q 038761          171 DGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIF  247 (365)
Q Consensus       171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~~~~  247 (365)
                      ...|||+.||||||++++..|.|+++ +.||.  +.|++.|.|+|..++.|.|.|||+|||+||+.||..|.....+.
T Consensus        14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~~   89 (98)
T 1x47_A           14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFVKQ   89 (98)
T ss_dssp             TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSSSSCC
T ss_pred             CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence            56899999999999999999999987 67876  99999999999999999999999999999999999997654433

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.69  E-value=5.5e-17  Score=131.07  Aligned_cols=67  Identities=19%  Similarity=0.261  Sum_probs=62.9

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +||+.||||||++++.+|.|++ .+.||+  +.|+|.|+|+|..++.| .|+|||+|||+||+.||..|..
T Consensus        17 d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~   84 (98)
T 1x47_A           17 SEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSG-TASSKKLAKNKAARATLEILIP   84 (98)
T ss_dssp             CHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHh
Confidence            5899999999999999999999 668987  99999999999999886 9999999999999999999975

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}

Probab=99.68  E-value=4.3e-17  Score=129.77  Aligned_cols=67  Identities=28%  Similarity=0.352  Sum_probs=62.0

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP   71 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~   71 (365)
                      ++|+.||||||+++  .|.|++ .++||+|++.|+|.|.|+|..+ .| .|+|||+|||+||+.||..|...
T Consensus        15 ~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G-~G~SKK~AEq~AA~~AL~~L~~~   82 (91)
T 2l33_A           15 HGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QG-AGSNKKVAKAYAALAALEKLFPD   82 (91)
T ss_dssp             STTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-Ee-eeCCHHHHHHHHHHHHHHHHhhc
Confidence            57999999999998  789998 6789999999999999999987 65 99999999999999999999764

>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1

Probab=99.68  E-value=2.8e-17  Score=131.10  Aligned_cols=72  Identities=24%  Similarity=0.057  Sum_probs=65.8

Q ss_pred             CCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCE-EEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761          171 DGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGE-VFYGKAGRTKKKAEMKAAKVAYTALIER  243 (365)
Q Consensus       171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~-~~~~G~G~SKK~Ae~~AA~~aL~~L~~~  243 (365)
                      ...|||+.||||+|++ ...|.|++++.||.|.+.|++.|.|+|. .++.|.|.|||+|||.||+.||..|.-.
T Consensus         4 ~~~D~KT~LQE~~Q~~-~~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l   76 (94)
T 1t4n_A            4 LDMNAKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKML   76 (94)
T ss_dssp             SCHHHHHHHHHHTCSS-SSCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHHHH
T ss_pred             CCCCchHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence            4579999999999997 4689999987799999999999999998 8999999999999999999999988643

>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B

Probab=99.67  E-value=4.1e-17  Score=134.66  Aligned_cols=66  Identities=18%  Similarity=0.059  Sum_probs=60.1

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCE-EEeecccccCcchHHHHHHHHHHHhc
Q 038761            1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGL-SFHSSVSCKSSKESQNDAAKLAFLHF   68 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~-~~~~gg~g~SKK~Aeq~AA~~AL~~L   68 (365)
                      +|||.||||||+.+ .+|.|++...||+|++.|++.|+|+|. .++.| .|+|||+|||+||+.||..+
T Consensus         9 D~KT~LQE~~Q~~~-~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G-~G~SKK~AEQ~AA~~AL~~l   75 (117)
T 1t4o_A            9 NAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTG-VGRNIKIAGIRAAENALRDK   75 (117)
T ss_dssp             THHHHHHHHHCCGG-GCCEEEEEECCCSSCCCEEEEEECTTCCEEEEE-EESSHHHHHHHHHHHHHHCH
T ss_pred             CchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEE-EeCCHHHHHHHHHHHHHHHH
Confidence            69999999999954 789999944599999999999999999 88886 99999999999999999864

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.66  E-value=3.2e-16  Score=126.35  Aligned_cols=70  Identities=27%  Similarity=0.404  Sum_probs=65.1

Q ss_pred             CCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHh
Q 038761          170 DDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE  242 (365)
Q Consensus       170 ~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~  242 (365)
                      ....|||+.||||||++  ..|.|+++ +.||.|.+.|++.|.|+|..+ .|.|.|||+||++||+.||..|..
T Consensus        13 ~~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~   83 (97)
T 2dmy_A           13 SKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGY   83 (97)
T ss_dssp             CCSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCC
Confidence            45689999999999996  78999987 689999999999999999988 999999999999999999999964

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}

Probab=99.65  E-value=3.7e-16  Score=124.37  Aligned_cols=70  Identities=36%  Similarity=0.365  Sum_probs=64.5

Q ss_pred             CCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761          171 DGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER  243 (365)
Q Consensus       171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~  243 (365)
                      ...++|+.||||||+++  .|.|+++ +.||.|.++|++.|.|+|..+ .|.|.|||+|||+||+.||..|...
T Consensus        12 ~~~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~   82 (91)
T 2l33_A           12 LTKHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPD   82 (91)
T ss_dssp             CCSSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCC
T ss_pred             hccCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhhc
Confidence            35689999999999998  8899987 789999999999999999887 9999999999999999999999754

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.65  E-value=2e-16  Score=133.51  Aligned_cols=68  Identities=26%  Similarity=0.332  Sum_probs=63.2

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEEeecccc-cCcchHHHHHHHHHHHhcCCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSC-KSSKESQNDAAKLAFLHFTSP   71 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~gg~g-~SKK~Aeq~AA~~AL~~L~~~   71 (365)
                      +||+.||||||++++.+|.|++...  +|.+.|+|.|+|+|..++.| .| +|||+|||+||+.||..|...
T Consensus        27 d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G-~G~~SKK~AEQ~AA~~AL~~L~~~   95 (128)
T 1whn_A           27 TPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQST-LWDKSKKLAEQTAAIVCLRSQGLP   95 (128)
T ss_dssp             CHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEES-SCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred             CHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEE-eccCCHHHHHHHHHHHHHHHHhcc
Confidence            6899999999999999999999554  89999999999999999886 99 999999999999999999753

>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B

Probab=99.65  E-value=2e-16  Score=130.53  Aligned_cols=72  Identities=24%  Similarity=0.057  Sum_probs=66.0

Q ss_pred             CCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCE-EEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761          171 DGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGE-VFYGKAGRTKKKAEMKAAKVAYTALIER  243 (365)
Q Consensus       171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~-~~~~G~G~SKK~Ae~~AA~~aL~~L~~~  243 (365)
                      ...|||+.||||||.. ...|.|++++.||.|.+.|++.|.|+|. .++.|.|.|||+|||.||+.||..|.-.
T Consensus         6 ~~~D~KT~LQE~~Q~~-~~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l   78 (117)
T 1t4o_A            6 LDMNAKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKML   78 (117)
T ss_dssp             CCTTHHHHHHHHHCCG-GGCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHH
T ss_pred             CCCCchHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence            4579999999999994 4789999986699999999999999998 8999999999999999999999988654

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}

Probab=99.64  E-value=2.9e-16  Score=129.88  Aligned_cols=65  Identities=28%  Similarity=0.324  Sum_probs=60.2

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPP   72 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~   72 (365)
                      +||+.||||||+     |.|++ .++||+|++.|+++|+|+|..+ .| .|+|||+|||+||+.||+.|...+
T Consensus        38 d~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G-~G~SKK~AEq~AA~~AL~~L~~~~  103 (114)
T 2ljh_A           38 NTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LG-QGRSKKVARIEAAATALRSFIQFK  103 (114)
T ss_dssp             CHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHCCCT
T ss_pred             CHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-Ee-eeCCHHHHHHHHHHHHHHHHHcCC
Confidence            689999999985     89999 7789999999999999999999 75 999999999999999999998754

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}

Probab=99.62  E-value=1.3e-15  Score=125.89  Aligned_cols=69  Identities=32%  Similarity=0.403  Sum_probs=63.3

Q ss_pred             cCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761          169 WDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER  243 (365)
Q Consensus       169 ~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~  243 (365)
                      .....|||++||||||+     |.|+++ +.||.|.++|++.|.|+|..+ .|.|.|||+|||+||+.||+.|...
T Consensus        33 ~~~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~  102 (114)
T 2ljh_A           33 IPQPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQF  102 (114)
T ss_dssp             CCCCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcC
Confidence            34568999999999984     899986 789999999999999999999 9999999999999999999999764

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.62  E-value=9.4e-16  Score=129.41  Aligned_cols=70  Identities=31%  Similarity=0.300  Sum_probs=66.1

Q ss_pred             CCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCEEEeeEec-cCHHHHHHHHHHHHHHHHHh
Q 038761          171 DGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAG-RTKKKAEMKAAKVAYTALIE  242 (365)
Q Consensus       171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~~~~~G~G-~SKK~Ae~~AA~~aL~~L~~  242 (365)
                      ...|||+.||||||++++.+|.|+++..  .|.+.|++.|.|+|..++.|.| .|||+|||+||+.||..|..
T Consensus        24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~   94 (128)
T 1whn_A           24 PQITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGL   94 (128)
T ss_dssp             TTCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTC
T ss_pred             cCCCHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhc
Confidence            4579999999999999999999999866  8999999999999999999999 99999999999999999964

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B

Probab=99.59  E-value=5e-15  Score=112.46  Aligned_cols=67  Identities=33%  Similarity=0.499  Sum_probs=61.0

Q ss_pred             CCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761          171 DGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER  243 (365)
Q Consensus       171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~  243 (365)
                      ...|+++.|||||     ..|.|+++ +.||.|.+.|++.|.|+|..+ .|.|.|||+|||.||+.||..|...
T Consensus         2 ~~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~SKK~Aeq~AA~~al~~L~~~   69 (71)
T 2b7v_A            2 SGKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL   69 (71)
T ss_dssp             CSSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHHHhc
Confidence            3579999999994     68999986 789999999999999999876 9999999999999999999999764

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B

Probab=99.56  E-value=4.8e-15  Score=112.58  Aligned_cols=62  Identities=26%  Similarity=0.261  Sum_probs=56.5

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFT   69 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~   69 (365)
                      +||+.|||||     .+|.|++ .++||+|++.|+|.|.|+|..+ .| .|+|||+|||+||+.||..|.
T Consensus         5 np~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G-~G~SKK~Aeq~AA~~al~~L~   67 (71)
T 2b7v_A            5 NPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EG-SGRNKKLAKARAAQSALATVF   67 (71)
T ss_dssp             CHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EE-EESSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EE-eeCCHHHHHHHHHHHHHHHHH
Confidence            5899999994     6799998 7789999999999999999976 65 999999999999999999874

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A

Probab=99.56  E-value=3.4e-14  Score=130.56  Aligned_cols=136  Identities=20%  Similarity=0.161  Sum_probs=103.5

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhh--hH
Q 038761           81 CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQE--AI  158 (365)
Q Consensus        81 ~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~--~~  158 (365)
                      ......|.++|.+.++  ..|  +..|+...                    ..+..|..-.|..+..+| +.|+..  +.
T Consensus        74 lV~~~~la~~a~~l~l--~~~--l~~~~~~~--------------------~~~~lad~~EAliGAiyl-d~g~~~~~~~  128 (221)
T 2nug_A           74 LISEEFFNLLAQKLEL--HKF--IRIKRGKI--------------------NETIIGDVFEALWAAVYI-DSGRDANFTR  128 (221)
T ss_dssp             HTSHHHHHHHHHTTTG--GGT--CBSCTTCC--------------------CHHHHHHHHHHHHHHHHH-HTTSCHHHHH
T ss_pred             HHCHHHHHHHHHHcCh--HHh--hccCCCcc--------------------cchHHHHHHHHHHHHHHH-hCCCCHHHHH
Confidence            4456778888888775  223  22333211                    167788888899999999 567665  52


Q ss_pred             -HHh----hhhc-c-cccCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHH
Q 038761          159 -FLY----AHVS-M-YLWDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEM  230 (365)
Q Consensus       159 -~~~----~~l~-~-~~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~  230 (365)
                       ++.    +.+. . .......|||+.||||||++++..|.|+++ +.||.|.+.|+|.|.|+|. ++.|.|.|||+||+
T Consensus       129 ~~i~~~~~~~~~~~~~~~~~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~skK~Ae~  207 (221)
T 2nug_A          129 ELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQ  207 (221)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCCHHHHHH
Confidence             222    2222 1 112335799999999999999999999987 7899999999999999999 99999999999999


Q ss_pred             HHHHHHHHHHHh
Q 038761          231 KAAKVAYTALIE  242 (365)
Q Consensus       231 ~AA~~aL~~L~~  242 (365)
                      .||+.||..|..
T Consensus       208 ~AA~~AL~~L~~  219 (221)
T 2nug_A          208 RAAEELIKLLEE  219 (221)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHhhc
Confidence            999999999963

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1

Probab=99.55  E-value=1.9e-14  Score=134.86  Aligned_cols=144  Identities=23%  Similarity=0.235  Sum_probs=106.6

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhhhH-H
Q 038761           81 CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAI-F  159 (365)
Q Consensus        81 ~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~~~-~  159 (365)
                      .+....|.++|.+.++  ..|-....|..                ..++..+.+..|....|..+..+| +.|++.+. +
T Consensus       100 lV~~~~la~~a~~lgL--~~~l~~~~~e~----------------~~~~~~~~~~lad~~EAliGAiyl-d~g~~~~~~~  160 (252)
T 1o0w_A          100 AASEEVLAMVSRKMNL--GKFLFLGKGEE----------------KTGGRDRDSILADAFEALLAAIYL-DQGYEKIKEL  160 (252)
T ss_dssp             HTSHHHHHHHHHHTTH--HHHCBCCHHHH----------------HTTGGGCHHHHHHHHHHHHHHHHH-HHCHHHHHHH
T ss_pred             HhCHHHHHHHHHHcCc--HHhhccCchhh----------------hcCCCCCccHHHhHHHHHHHHHHH-cCCHHHHHHH
Confidence            3456778888888775  23322211110                012345678889999999999999 55766552 2


Q ss_pred             Hh----hhhccc-ccCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHH
Q 038761          160 LY----AHVSMY-LWDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA  233 (365)
Q Consensus       160 ~~----~~l~~~-~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA  233 (365)
                      +.    +.+... ......|||+.||||||++++..|.|+++ +.||.|.+.|+|.|.|+|..++.|.|.|||+||+.||
T Consensus       161 i~~~~~~~~~~~~~~~~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA  240 (252)
T 1o0w_A          161 FEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAA  240 (252)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcccccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHH
Confidence            22    222211 12245799999999999999999999987 7899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 038761          234 KVAYTALIER  243 (365)
Q Consensus       234 ~~aL~~L~~~  243 (365)
                      +.||..|...
T Consensus       241 ~~AL~~L~~~  250 (252)
T 1o0w_A          241 RIAYEKLLKE  250 (252)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHHhhc
Confidence            9999999653

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}

Probab=99.53  E-value=1.2e-14  Score=111.71  Aligned_cols=66  Identities=27%  Similarity=0.339  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761            2 YKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP   71 (365)
Q Consensus         2 ~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~   71 (365)
                      .|+-|+||+|.+  ..|.|++ .++||+|++.|++.|.|+|..+ .| .|+|||+|||+||+.||..|...
T Consensus         6 ~K~pl~~L~q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G-~G~SKK~Aeq~AA~~al~~L~~~   72 (75)
T 3p1x_A            6 GKNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QG-AGSNKKVAKAYAALAALEKLFPD   72 (75)
T ss_dssp             CCCHHHHHHHHS--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHCTT
T ss_pred             CCCHHHHHHHcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EE-EECCHHHHHHHHHHHHHHHHHcc
Confidence            366788888886  4789999 6799999999999999999988 75 99999999999999999999764

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}

Probab=99.52  E-value=4.6e-14  Score=108.37  Aligned_cols=66  Identities=38%  Similarity=0.422  Sum_probs=56.7

Q ss_pred             hhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761          175 YKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER  243 (365)
Q Consensus       175 ~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~  243 (365)
                      .|+.|++|+|..  ..|.|++. ++||.|.+.|++.|.|+|..+ .|.|.|||+|||+||+.||+.|...
T Consensus         6 ~K~pl~~L~q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~   72 (75)
T 3p1x_A            6 GKNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPD   72 (75)
T ss_dssp             CCCHHHHHHHHS--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTT
T ss_pred             CCCHHHHHHHcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHcc
Confidence            344555555554  58899987 799999999999999999988 9999999999999999999999764

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A

Probab=99.51  E-value=1.6e-14  Score=132.86  Aligned_cols=68  Identities=24%  Similarity=0.315  Sum_probs=63.7

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +||+.||||||++++.+|.|++ .+.||+|.+.|+|.|+|+|. ++.| .|.|||+||+.||+.||..|..
T Consensus       151 ~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G-~G~skK~Ae~~AA~~AL~~L~~  219 (221)
T 2nug_A          151 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLG-EGKSKKEAEQRAAEELIKLLEE  219 (221)
T ss_dssp             CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEE-ecCCHHHHHHHHHHHHHHHhhc
Confidence            5899999999999999999998 67899999999999999999 8886 9999999999999999999864

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1

Probab=99.49  E-value=3.2e-14  Score=133.34  Aligned_cols=69  Identities=28%  Similarity=0.433  Sum_probs=64.6

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +||+.||||||++++..|.|++ .+.||+|.+.|+|.|+|+|..++.| .|.|||+|||.||+.||..|..
T Consensus       180 dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~  249 (252)
T 1o0w_A          180 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATG-KGRTKKEAEKEAARIAYEKLLK  249 (252)
T ss_dssp             CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEE-eeCCHHHHHHHHHHHHHHHHhh
Confidence            5899999999999999999999 6789999999999999999999886 9999999999999999999875

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}

Probab=99.47  E-value=8.4e-15  Score=137.11  Aligned_cols=143  Identities=21%  Similarity=0.148  Sum_probs=39.2

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhhh-HH
Q 038761           81 CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEA-IF  159 (365)
Q Consensus        81 ~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~~-~~  159 (365)
                      ......|.+++.+.++  ..|-..  |+...              ..++..+.|-.|.--.|..+..+| +.|++.+ .+
T Consensus        98 lVs~~~La~~a~~lgL--~~~l~~--~~~e~--------------~~~g~~~~~~lad~fEAliGAiyl-d~G~~~~~~~  158 (248)
T 3n3w_A           98 LVNEKSFAKIANSLNL--GDFILM--SVAEE--------------NNGGKEKPSILSDALEAIIGAIHL-EAGFEFAKTI  158 (248)
T ss_dssp             HHSHHHHHHHHHHTTG--GGTCBC--CHHHH--------------HTTGGGCHHHHHHHHHHHHHHHHH-HHCHHHHHHH
T ss_pred             HHCHHHHHHHHHHcCc--HHHhhc--Cchhh--------------hcCCCCCccHHHHHHHHHHHHHHH-HCChHHHHHH
Confidence            3456778888888875  333332  22100              012345677889999999999999 5677665 33


Q ss_pred             Hh----hhhccc-ccCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHH
Q 038761          160 LY----AHVSMY-LWDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA  233 (365)
Q Consensus       160 ~~----~~l~~~-~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA  233 (365)
                      +.    +.+... ......|||+.||||||++++..|.|+++ +.||.|.+.|++.|.|+|..++.|.|.|||+||+.||
T Consensus       159 i~~~~~~~l~~~~~~~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA  238 (248)
T 3n3w_A          159 ALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAA  238 (248)
T ss_dssp             HHHHHHHHCC----------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhhccccccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHH
Confidence            32    222211 12346899999999999999999999987 7899999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 038761          234 KVAYTALIE  242 (365)
Q Consensus       234 ~~aL~~L~~  242 (365)
                      +.||+.|+.
T Consensus       239 ~~AL~~L~~  247 (248)
T 3n3w_A          239 KIALEKLGA  247 (248)
T ss_dssp             ---------
T ss_pred             HHHHHHHHc
Confidence            999999864

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}

Probab=99.42  E-value=3.8e-14  Score=132.01  Aligned_cols=143  Identities=26%  Similarity=0.276  Sum_probs=37.8

Q ss_pred             CcHHHHHHHHHHc---CCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhhhH
Q 038761           82 RYKSVLQNYARRK---NLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAI  158 (365)
Q Consensus        82 ~~~s~L~E~~qk~---~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~~~  158 (365)
                      .....|.++|.+.   ++  ..|-....|...                .++..+.|-.|.-..|..+..+| +.|++.+.
T Consensus        81 V~~~~la~~a~~l~~~gL--~~~l~~~~~e~~----------------~~~~~~~~~lad~~EAliGAiyl-d~g~~~~~  141 (242)
T 2a11_A           81 VNTQALADVARRLCAEGL--GVHVLLGRGEAN----------------TGGADKSSILADGMESLLGAIYL-QHGMEKAR  141 (242)
T ss_dssp             HSHHHHHHHHHHHSSSCS--GGGCBCCHHHHH----------------TTGGGCHHHHHHHHHHHHHHHHH-HHCHHHHH
T ss_pred             hCHHHHHHHHHHhhhhCh--HHHhhcCchhhh----------------cCCCCCccHHHHHHHHHHHHHHh-cCCHHHHH
Confidence            4466788889888   65  334332111100                12234577889999999999999 55766552


Q ss_pred             -HHh----hhhccc-ccCCCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHH
Q 038761          159 -FLY----AHVSMY-LWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKA  232 (365)
Q Consensus       159 -~~~----~~l~~~-~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~A  232 (365)
                       ++.    +.+... ......|||+.||||||++++..|.|++...||.|.+.|+|.|.++|..++.|.|.|||+||+.|
T Consensus       142 ~~i~~~~~~~~~~~~~~~~~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~A  221 (242)
T 2a11_A          142 EVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKA  221 (242)
T ss_dssp             HHHHHHTHHHHHHTTC----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhhhccccCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHH
Confidence             222    222211 12235799999999999999999999998899999999999999999989999999999999999


Q ss_pred             HHHHHHHHHhh
Q 038761          233 AKVAYTALIER  243 (365)
Q Consensus       233 A~~aL~~L~~~  243 (365)
                      |+.||..|...
T Consensus       222 A~~AL~~L~~~  232 (242)
T 2a11_A          222 AAAAWKALEVL  232 (242)
T ss_dssp             -----------
T ss_pred             HHHHHHHHhhc
Confidence            99999999754

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}

Probab=99.41  E-value=1.6e-14  Score=135.12  Aligned_cols=69  Identities=33%  Similarity=0.433  Sum_probs=0.0

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +||+.||||||++++.+|.|++ .+.||+|.+.|+|.|+|+|..++.| .|.|||+||+.||+.||+.|..
T Consensus       178 dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~  247 (248)
T 3n3w_A          178 DYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARA-IAGSKKEAQQMAAKIALEKLGA  247 (248)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             CHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHc
Confidence            5899999999999999999999 6789999999999999999999886 9999999999999999998864

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}

Probab=99.37  E-value=4.4e-14  Score=131.56  Aligned_cols=70  Identities=30%  Similarity=0.408  Sum_probs=0.0

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP   71 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~   71 (365)
                      +||+.||||||++++..|.|++..+||+|.+.|+|.|+|+|..++.| .|.|||+||+.||+.||+.|...
T Consensus       163 dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G-~G~skk~Ae~~AA~~AL~~L~~~  232 (242)
T 2a11_A          163 DWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSG-VGRSKKEAEQKAAAAAWKALEVL  232 (242)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             ChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHhhc
Confidence            58999999999999999999995599999999999999999988886 99999999999999999999753

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}

Probab=99.16  E-value=9.5e-12  Score=121.29  Aligned_cols=146  Identities=14%  Similarity=0.043  Sum_probs=39.5

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhcc--CChhhh-
Q 038761           81 CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLAC--DDFQEA-  157 (365)
Q Consensus        81 ~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~--~g~~~~-  157 (365)
                      ......|.+++.+.|+.  .|-....|+...               ..+..+.+-.|..-.|..+..+|..  .|+..+ 
T Consensus       167 lVs~~~La~iA~~lgL~--~~l~~~~g~~~~---------------~~~~~~~~ilaD~fEAlIGAIylD~~~~G~~~a~  229 (341)
T 3rv0_A          167 IVNNNNLFDWSTKLNFT--KRLQGNIATPTR---------------VVKDKMSKRYADCVEAYIGALVIDRFGTEFLDIK  229 (341)
T ss_dssp             HHSHHHHHHHHHHTTTT--TTTCCSSCCC-------------------CCHHHHHHHHHHHHHHHHHHHHHCSSTTHHHH
T ss_pred             HhCHHHHHHHHHHcCcH--HHhhhcCChhhh---------------ccCCccccHHHHHHHHHHHHHhhcCccCCHHHHH
Confidence            44567888999998863  343322222110               0112356778899999999999954  277665 


Q ss_pred             HHHh----hhhcccc-----cCCCcchhhHHHHHHHhcCCCC-CeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHH
Q 038761          158 IFLY----AHVSMYL-----WDDGVFYKNVLHELSLREGLPV-PLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKK  226 (365)
Q Consensus       158 ~~~~----~~l~~~~-----~~~~~n~ks~LqE~~qk~~~~~-P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK  226 (365)
                      .++.    +.+....     .....|||+.||||||++++.. |.|++. +.||     |++.|.|+|..++.|.|.|||
T Consensus       230 ~fi~~l~~~~l~~~~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G~G~SKK  304 (341)
T 3rv0_A          230 EWLEELSEKKLAKSSQMVIKEPLNKNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDEAEGNSIR  304 (341)
T ss_dssp             HHHHHHTHHHHHCGGGC---------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEEEEeCCHH
Confidence            3332    2222110     1345799999999999999765 599987 5564     999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccCC
Q 038761          227 KAEMKAAKVAYTALIERKLIFS  248 (365)
Q Consensus       227 ~Ae~~AA~~aL~~L~~~~~~~~  248 (365)
                      +|||.||+.||+.|....+...
T Consensus       305 ~AEq~AA~~AL~~L~~~~k~~~  326 (341)
T 3rv0_A          305 EAEHRAAMKVLENDELLRKYSV  326 (341)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHHHHHhhhhhhhhh
Confidence            9999999999999987644443

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}

Probab=99.01  E-value=3.1e-11  Score=117.70  Aligned_cols=64  Identities=16%  Similarity=0.189  Sum_probs=0.0

Q ss_pred             ChHHHHHHHHHhcCCCC-CeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSL-PRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~-P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +||+.||||||++++.. |.|++ .+.||     |++.|+|+|..++.| .|.|||+|||.||+.||+.|..
T Consensus       255 d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G-~G~SKK~AEq~AA~~AL~~L~~  320 (341)
T 3rv0_A          255 NAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDEA-EGNSIREAEHRAAMKVLENDEL  320 (341)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             CHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEEE-EeCCHHHHHHHHHHHHHHHhhh
Confidence            58999999999999765 59998 55675     999999999999886 9999999999999999998875

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A

Probab=98.80  E-value=1.2e-08  Score=95.80  Aligned_cols=109  Identities=14%  Similarity=0.062  Sum_probs=75.5

Q ss_pred             ccccHHHHHHHHHHHHHHHhccCCh--hhh-HHHhhhhcccccC-CCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCe
Q 038761          130 FFKNLKQAEHAAAKVALFSLACDDF--QEA-IFLYAHVSMYLWD-DGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPT  205 (365)
Q Consensus       130 ~g~sKK~AK~~AA~~aL~~L~~~g~--~~~-~~~~~~l~~~~~~-~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~  205 (365)
                      ....|-.|....|..+..+| +.|+  ..+ .++.+.+...+.. ...++|+.|+||++.... .+.|.  ..++.|.+.
T Consensus       151 ~~~~~~laD~~EAliGAiyl-D~G~~~~~~~~~i~~~~~~~i~~~~~~~~k~~l~el~~~~~~-~~~~~--~~~~~~~~~  226 (265)
T 3c4b_A          151 IEVPKAMGDIFESLAGAIYM-DSGMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEMEPE-TAKFS--PAERTYDGK  226 (265)
T ss_dssp             SCCCHHHHHHHHHHHHHHHH-HTTSCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHCTT-TEEEC--CCEECTTSC
T ss_pred             cccchHHHHHHHHHhhheee-ecCCCHHHHHHHHHHHHHHHHHhHhhcCCCCHHHHHHHhccC-Cceee--eccccCCCc
Confidence            45689999999999999999 6666  333 2332222111100 012455566666655432 22332  234468899


Q ss_pred             EEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHh
Q 038761          206 FISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE  242 (365)
Q Consensus       206 F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~  242 (365)
                      |++.|.|+|..++.|.|.|||+|||.||+.||+.|..
T Consensus       227 f~v~v~v~~~~~~~G~G~SkK~Aeq~AA~~AL~~l~~  263 (265)
T 3c4b_A          227 VRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKA  263 (265)
T ss_dssp             EEEEEEETTTEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecceEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence            9999999998899999999999999999999999975

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A

Probab=98.56  E-value=4.3e-08  Score=92.05  Aligned_cols=64  Identities=19%  Similarity=0.210  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcC
Q 038761            2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFT   69 (365)
Q Consensus         2 ~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~   69 (365)
                      +|+.||||+|.... .+.|.  ..++.|.+.|+|.|+|+|..++.| .|+|||+|||.||+.||+.|.
T Consensus       199 ~k~~l~el~~~~~~-~~~~~--~~~~~~~~~f~v~v~v~~~~~~~G-~G~SkK~Aeq~AA~~AL~~l~  262 (265)
T 3c4b_A          199 PRSPVRELLEMEPE-TAKFS--PAERTYDGKVRVTVEVVGKGKFKG-VGRSYRIAKSAAARRALRSLK  262 (265)
T ss_dssp             CCCHHHHHHHHCTT-TEEEC--CCEECTTSCEEEEEEETTTEEEEE-EESSHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHhccC-Cceee--eccccCCCcEEEEEEEecceEEEE-eeCCHHHHHHHHHHHHHHHHh
Confidence            56677777776653 23343  345578999999999999988886 999999999999999999875

>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}

Probab=95.66  E-value=0.036  Score=44.27  Aligned_cols=69  Identities=12%  Similarity=0.008  Sum_probs=49.0

Q ss_pred             cchhhHHHHHHHhcC-----CCCCeEEEEeeCCCCCCeEEEEEEECC----EEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761          173 VFYKNVLHELSLREG-----LPVPLYETIKCGAPHMPTFISMVEVDG----EVFYGKAGRTKKKAEMKAAKVAYTALIER  243 (365)
Q Consensus       173 ~n~ks~LqE~~qk~~-----~~~P~Y~~~~~Gp~h~~~F~~~V~i~g----~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~  243 (365)
                      .+.++.|+.||++.-     ...|.|.+.+... ....| |+|.+=.    +.+....-.||+.||+.||-.|+..|...
T Consensus         4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~L~~~   81 (102)
T 2kou_A            4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNL   81 (102)
T ss_dssp             SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHHHHHC
Confidence            467899999999853     3678999764321 13467 8888721    11212234999999999999999999875

>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}

Probab=95.12  E-value=0.027  Score=45.04  Aligned_cols=70  Identities=17%  Similarity=0.175  Sum_probs=48.3

Q ss_pred             cCcHHHHHHHHHHcCC-----CCCceeeeccCCCCCcceEEEEEEcC----eEEEeccccccHHHHHHHHHHHHHHHhcc
Q 038761           81 CRYKSVLQNYARRKNL-----DSPLYSSIREGPAHACSFKARVTIDG----HTFESLEFFKNLKQAEHAAAKVALFSLAC  151 (365)
Q Consensus        81 ~~~~s~L~E~~qk~~l-----~~P~Y~~~~~Gp~h~~~F~~~v~I~g----~~~~~~g~g~sKK~AK~~AA~~aL~~L~~  151 (365)
                      .+.++.|+.||++.--     ..|.|.+...... ...| |+|.+-.    +.+.+ ...++|+.||+.||.+|++.|.+
T Consensus         4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~-~~~~-c~v~LP~~splr~i~g-~~~~sk~~AK~sAAf~Ac~~L~~   80 (102)
T 2kou_A            4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEF-GGTI-CRITLPANAPISEIES-SLLPSTEAAKKDACLKAVHELHN   80 (102)
T ss_dssp             SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCGG-GCEE-EEEECCTTCSSCCEEE-EEESSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCccccCccceEEEeEeecC-CCeE-EEEECCCCCCCCeeeC-CccccHHHHHHHHHHHHHHHHHH
Confidence            4578999999998632     3577775422211 2356 8888743    22332 24589999999999999999976


Q ss_pred             CC
Q 038761          152 DD  153 (365)
Q Consensus       152 ~g  153 (365)
                      .|
T Consensus        81 ~G   82 (102)
T 2kou_A           81 LG   82 (102)
T ss_dssp             HC
T ss_pred             CC
Confidence            55

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=88.41  E-value=0.49  Score=51.01  Aligned_cols=40  Identities=25%  Similarity=0.355  Sum_probs=35.2

Q ss_pred             cEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCC
Q 038761           32 RFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPP   72 (365)
Q Consensus        32 ~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~   72 (365)
                      .|.|.+.+-+..+-++ ..+-||.|||.||+.||++|+..+
T Consensus        58 ~~~c~~~lp~~~~~~~-~~~~kkd~eq~aa~~al~~~g~~~   97 (950)
T 3htx_A           58 LYRCHLQLPEFSVVSN-VFKKKKDSEQSAAELALDKLGIRP   97 (950)
T ss_dssp             EEEEEEECSSCEEECC-CBSCHHHHHHHHHHHHHTTTTSTT
T ss_pred             eEEEEeeCCCceEecc-hhhccccHHHHHHHHHHHHhCCCc
Confidence            8999999987776564 899999999999999999998754

>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.30  E-value=2.5  Score=34.01  Aligned_cols=73  Identities=16%  Similarity=-0.060  Sum_probs=46.5

Q ss_pred             CCcchhhHHHHHHHhcCCC--CCeEEEEeeCCCCCCeEEEEEEEC---CEEEeeEeccCHHHHHHHHHHHHHHHHHhhcc
Q 038761          171 DGVFYKNVLHELSLREGLP--VPLYETIKCGAPHMPTFISMVEVD---GEVFYGKAGRTKKKAEMKAAKVAYTALIERKL  245 (365)
Q Consensus       171 ~~~n~ks~LqE~~qk~~~~--~P~Y~~~~~Gp~h~~~F~~~V~i~---g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~~  245 (365)
                      .-..+|++|+...|+---.  .-.|.+... ..+.++=.|++++.   -..| +|.|+.|-+||++||-.|++.|+....
T Consensus        15 ~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~-t~g~k~K~~tl~l~WP~~mef-~a~G~rK~eAE~kAAA~AC~kLK~Lgl   92 (119)
T 2db2_A           15 EFPQPKNLLNSVIGRALGISHAKDKLVYVH-TNGPKKKKVTLHIKWPKSVEV-EGYGSKKIDAERQAAAAACQLFKGWGL   92 (119)
T ss_dssp             TCSCHHHHHHHHHHHHTTHHHHHHHEEEEE-CCSSSSEEEEEEECSSSCEEE-EEEESSHHHHHHHHHHHHHHHHHHHTS
T ss_pred             hCCChHHHHHHHHHHHHccCchhhheeEEe-ecCCceeEEEEEecCCCcEEE-EeeccchHHHHHHHHHHHHHHHHHcCc
Confidence            3457888888777663211  112222211 12234446777764   3343 899999999999999999999998643

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=84.92  E-value=1.2  Score=48.20  Aligned_cols=71  Identities=17%  Similarity=0.079  Sum_probs=49.0

Q ss_pred             CcchhhHHHHHHHhcCCCCCeEEEEee------C------CCCC-CeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHH
Q 038761          172 GVFYKNVLHELSLREGLPVPLYETIKC------G------APHM-PTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYT  238 (365)
Q Consensus       172 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~------G------p~h~-~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~  238 (365)
                      ...||..+++.-.   -. +.|++++.      |      |... ..|.|.+.+=+..+..+.-+-||.|||.||+.||+
T Consensus        16 ~~~pk~~~~q~~~---~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al~   91 (950)
T 3htx_A           16 TPTPKAIIHQKFG---AK-ASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALD   91 (950)
T ss_dssp             CCCCHHHHHHTTG---GG-SEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHhC---cc-eeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchhhccccHHHHHHHHHHH
Confidence            3467777764322   22 68988642      1      2222 37888888855455568889999999999999999


Q ss_pred             HHHhhccc
Q 038761          239 ALIERKLI  246 (365)
Q Consensus       239 ~L~~~~~~  246 (365)
                      +|+..+..
T Consensus        92 ~~g~~~~~   99 (950)
T 3htx_A           92 KLGIRPQN   99 (950)
T ss_dssp             TTTSTTTS
T ss_pred             HhCCCccc
Confidence            99886443

>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.05  E-value=1.6  Score=35.17  Aligned_cols=69  Identities=19%  Similarity=0.066  Sum_probs=44.5

Q ss_pred             cCcHHHHHHHHHHcCCC--CCcee-ee-ccCCCCCcceEEEEEEc---CeEEEeccccccHHHHHHHHHHHHHHHhccCC
Q 038761           81 CRYKSVLQNYARRKNLD--SPLYS-SI-REGPAHACSFKARVTID---GHTFESLEFFKNLKQAEHAAAKVALFSLACDD  153 (365)
Q Consensus        81 ~~~~s~L~E~~qk~~l~--~P~Y~-~~-~~Gp~h~~~F~~~v~I~---g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g  153 (365)
                      ..|++.|+...|+---.  .-.|. .. .+|..   .=.|++++.   -.+|+  +.|+.|.+|++.||-.|++.|+..|
T Consensus        17 p~PKnLL~~ViqrA~~ss~~kd~l~~~~t~g~k---~K~~tl~l~WP~~mef~--a~G~rK~eAE~kAAA~AC~kLK~Lg   91 (119)
T 2db2_A           17 PQPKNLLNSVIGRALGISHAKDKLVYVHTNGPK---KKKVTLHIKWPKSVEVE--GYGSKKIDAERQAAAAACQLFKGWG   91 (119)
T ss_dssp             SCHHHHHHHHHHHHTTHHHHHHHEEEEECCSSS---SEEEEEEECSSSCEEEE--EEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CChHHHHHHHHHHHHccCchhhheeEEeecCCc---eeEEEEEecCCCcEEEE--eeccchHHHHHHHHHHHHHHHHHcC
Confidence            45899998876654210  01121 11 23432   236777774   34554  5899999999999999999998655


Q ss_pred             h
Q 038761          154 F  154 (365)
Q Consensus       154 ~  154 (365)
                      +
T Consensus        92 l   92 (119)
T 2db2_A           92 L   92 (119)
T ss_dssp             S
T ss_pred             c
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	365
d1o0wa2	69	d.50.1.1 (A:168-236) RNase III, C-terminal domain	1e-15
d1o0wa2	69	d.50.1.1 (A:168-236) RNase III, C-terminal domain	1e-12
d1o0wa2	69	d.50.1.1 (A:168-236) RNase III, C-terminal domain	6e-11
d2nuga2	68	d.50.1.1 (A:151-218) RNase III, C-terminal domain	3e-13
d2nuga2	68	d.50.1.1 (A:151-218) RNase III, C-terminal domain	1e-10
d2nuga2	68	d.50.1.1 (A:151-218) RNase III, C-terminal domain	2e-09
d1x48a1	76	d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p	5e-12
d1x48a1	76	d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p	2e-11
d1x48a1	76	d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p	3e-11
d1x47a1	85	d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie	6e-12
d1x47a1	85	d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie	1e-09
d1x47a1	85	d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie	8e-09
d1qu6a1	90	d.50.1.1 (A:1-90) dsRNA-dependent protein kinase p	7e-12
d1qu6a1	90	d.50.1.1 (A:1-90) dsRNA-dependent protein kinase p	1e-08
d1qu6a1	90	d.50.1.1 (A:1-90) dsRNA-dependent protein kinase p	2e-08
d2b7va1	71	d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (R	4e-11
d2b7va1	71	d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (R	2e-08
d2b7va1	71	d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (R	4e-08
d2dmya1	84	d.50.1.1 (A:8-91) Spermatid perinuclear RNA-bindin	1e-10
d2dmya1	84	d.50.1.1 (A:8-91) Spermatid perinuclear RNA-bindin	1e-07
d2dmya1	84	d.50.1.1 (A:8-91) Spermatid perinuclear RNA-bindin	3e-06
d1whna_	128	d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like,	1e-10
d1whna_	128	d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like,	2e-10
d1whna_	128	d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like,	3e-08
d1x49a1	85	d.50.1.1 (A:8-92) dsRNA-dependent protein kinase p	3e-10
d1x49a1	85	d.50.1.1 (A:8-92) dsRNA-dependent protein kinase p	2e-08
d1x49a1	85	d.50.1.1 (A:8-92) dsRNA-dependent protein kinase p	3e-08
d2b7ta1	73	d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (R	6e-10
d2b7ta1	73	d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (R	8e-08
d2b7ta1	73	d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (R	2e-07
d1di2a_	69	d.50.1.1 (A:) Double-stranded RNA-binding protein	3e-09
d1di2a_	69	d.50.1.1 (A:) Double-stranded RNA-binding protein	3e-08
d1di2a_	69	d.50.1.1 (A:) Double-stranded RNA-binding protein	1e-07
d1whqa_	99	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	3e-09
d1whqa_	99	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	4e-08
d1whqa_	99	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	7e-07
d2cpna1	76	d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Hu	2e-08
d2cpna1	76	d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Hu	1e-07
d2cpna1	76	d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Hu	2e-07
d1uila_	113	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	3e-08
d1uila_	113	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	9e-08
d1uila_	113	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	9e-06
d1ekza_	76	d.50.1.1 (A:) Staufen, domain III {Fruit fly (Dros	4e-08
d1ekza_	76	d.50.1.1 (A:) Staufen, domain III {Fruit fly (Dros	3e-07
d1ekza_	76	d.50.1.1 (A:) Staufen, domain III {Fruit fly (Dros	1e-06
d1qu6a2	89	d.50.1.1 (A:91-179) dsRNA-dependent protein kinase	6e-08
d1qu6a2	89	d.50.1.1 (A:91-179) dsRNA-dependent protein kinase	1e-07
d1qu6a2	89	d.50.1.1 (A:91-179) dsRNA-dependent protein kinase	8e-07
d1t4oa_	81	d.50.1.1 (A:) RNase III, C-terminal domain {Baker'	7e-07
d1t4oa_	81	d.50.1.1 (A:) RNase III, C-terminal domain {Baker'	2e-05
d1uhza_	89	d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus muscul	6e-06
d1uhza_	89	d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus muscul	8e-06
d1uhza_	89	d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus muscul	8e-05
d2dixa1	73	d.50.1.1 (A:7-79) Interferon-inducible double stra	1e-05
d2dixa1	73	d.50.1.1 (A:7-79) Interferon-inducible double stra	1e-05
d2dixa1	73	d.50.1.1 (A:7-79) Interferon-inducible double stra	8e-05

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 68.4 bits (167), Expect = 1e-15
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 175 YKNVLHELSLREGLPVPLYETIKC-GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
           YK  L E+   E    P Y  ++         F+  V V+G+      GRTKK+AE +AA
Sbjct: 2   YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAA 61

Query: 234 KVAYTALI 241
           ++AY  L+
Sbjct: 62  RIAYEKLL 69

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 60.3 bits (146), Expect = 1e-12
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
          YKT +QE+   +    P Y  ++    D D  F   V VNG +  +    ++ KE++ +A
Sbjct: 2  YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATG-KGRTKKEAEKEA 60

Query: 61 AKLAF 65
          A++A+
Sbjct: 61 ARIAY 65

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 55.7 bits (134), Expect = 6e-11
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
           YK+ LQ   + ++   P Y  +R         F   V ++G T  +    +  K+AE  A
Sbjct: 2   YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIAT-GKGRTKKEAEKEA 60

Query: 142 AKVALFSL 149
           A++A   L
Sbjct: 61  ARIAYEKL 68

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 62.3 bits (151), Expect = 3e-13
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 175 YKNVLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
           YK +L E++ +     P Y  I   G  H   FI   ++      G+ G++KK+AE +AA
Sbjct: 2   YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGE-GKSKKEAEQRAA 60

Query: 234 KVAYTAL 240
           +     L
Sbjct: 61  EELIKLL 67

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 54.6 bits (131), Expect = 1e-10
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
          YKT +QE+  ++    P Y  +  +G  H  +F     +           KS KE++  A
Sbjct: 2  YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLG--EGKSKKEAEQRA 59

Query: 61 AKLA 64
          A+  
Sbjct: 60 AEEL 63

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 51.5 bits (123), Expect = 2e-09
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
           YK++LQ   +++  + P Y  I   GP H   F     I  +        K+ K+AE  A
Sbjct: 2   YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLG--EGKSKKEAEQRA 59

Query: 142 AKVALFSL 149
           A+  +  L
Sbjct: 60  AEELIKLL 67

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.9 bits (142), Expect = 5e-12
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
           Y  +++  + ++ L V  YE  +  +     FI   ++   ++   +G TK++A+  AAK
Sbjct: 1   YIGLVNSFAQKKKLSVN-YEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAK 59

Query: 235 VAYTALIER 243
            AY  L++ 
Sbjct: 60  EAYQKLLKS 68

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.9 bits (137), Expect = 2e-11
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 2/73 (2%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
          Y   V     +K+ S+         ++   RF     +    +  + S  + +E++  AA
Sbjct: 1  YIGLVNSFAQKKKLSVNYEQCE-PNSELPQRFICKCKIGQTMYG-TGSGVTKQEAKQLAA 58

Query: 62 KLAFLHFTSPPPP 74
          K A+      PP 
Sbjct: 59 KEAYQKLLKSPPK 71

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.6 bits (136), Expect = 3e-11
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
           Y  ++ ++A++K L S  Y            F  +  I    + +       ++A+  AA
Sbjct: 1   YIGLVNSFAQKKKL-SVNYEQCEPNSELPQRFICKCKIGQTMYGT-GSGVTKQEAKQLAA 58

Query: 143 KVALFSL 149
           K A   L
Sbjct: 59  KEAYQKL 65

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 6e-12
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
              +LHE   R     P+Y   +C       F + V +DG  +      +KK A+ KAA+
Sbjct: 11  EVCILHEYMQRVLKVRPVYNFFECE-NPSEPFGASVTIDGVTYGSGTASSKKLAKNKAAR 69

Query: 235 VAYTALI 241
                LI
Sbjct: 70  ATLEILI 76

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (125), Expect = 1e-09
 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
              + E   +     P Y+  +   +    F +SV+++G+++  S +  S K ++N AA
Sbjct: 11 EVCILHEYMQRVLKVRPVYNFFECE-NPSEPFGASVTIDGVTY-GSGTASSKKLAKNKAA 68

Query: 62 KLAF 65
          +   
Sbjct: 69 RATL 72

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (119), Expect = 8e-09
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 83  YKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
              +L  Y +R     P+Y+    E P+    F A VTIDG T+ S     + K A++ A
Sbjct: 11  EVCILHEYMQRVLKVRPVYNFFECENPSE--PFGASVTIDGVTYGS-GTASSKKLAKNKA 67

Query: 142 AKVALFSLACDDFQE 156
           A+  L  L   DF +
Sbjct: 68  ARATLEIL-IPDFVK 81

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 7e-12
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 174 FYKNVLHELSLREGLPVPLYETIKC-GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKA 232
           F+   L+    ++G+    Y+ +   G PH   F   V +DG  F    GR+KK+A+  A
Sbjct: 14  FFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAA 72

Query: 233 AKVAYTALIERK 244
           AK+A   L + K
Sbjct: 73  AKLAVEILNKEK 84

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 1e-08
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
          +  ++     QK+  + +Y  + + G  HD RF   V ++G  F       S KE++N A
Sbjct: 15 FMEELNTYR-QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGR-SKKEAKNAA 72

Query: 61 AKLAFLHFTSPPPPPPP 77
          AKLA            P
Sbjct: 73 AKLAVEILNKEKKAVSP 89

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 2e-08
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
           +   L  Y +++ +          GP H   F  +V IDG  F      ++ K+A++AAA
Sbjct: 15  FMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPE-GEGRSKKEAKNAAA 73

Query: 143 KVALFSL 149
           K+A+  L
Sbjct: 74  KLAVEIL 80

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.4 bits (136), Expect = 4e-11
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 175 YKNVLHELSLREGLPVPLYETIKC-GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
              +L+EL      P   Y+ +   G  H  +F+  V VDG+ F G  GR KK A+ +AA
Sbjct: 6   PVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFFEGS-GRNKKLAKARAA 59

Query: 234 KVAYTALIERKL 245
           + A   +    L
Sbjct: 60  QSALATVFNLHL 71

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.7 bits (116), Expect = 2e-08
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
              +L             Y  + E G +HA SF   V +DG  FE     +N K A+  A
Sbjct: 6   PVMILNELRP-----GLKYDFLSESGESHAKSFVMSVVVDGQFFE--GSGRNKKLAKARA 58

Query: 142 AKVALFSL 149
           A+ AL ++
Sbjct: 59  AQSALATV 66

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.5 bits (113), Expect = 4e-08
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
              + EL    ++        + G  H   F  SV V+G  F    S ++ K ++  AA
Sbjct: 6  PVMILNELRPGLKYDFLS----ESGESHAKSFVMSVVVDGQFFEG--SGRNKKLAKARAA 59

Query: 62 KLA 64
          + A
Sbjct: 60 QSA 62

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 1e-10
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 176 KNVLHELS-LREGLPVPLYETIKC-GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
            ++++ L  L +  P   Y+ +   G  H P F   V+VDG  +    G +KK A++  A
Sbjct: 9   IDLMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEAS-GPSKKTAKLHVA 67

Query: 234 KVAYTAL 240
                A+
Sbjct: 68  VKVLQAM 74

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
              +  L   +     +Y  +   G  H P F  SV V+G ++ +  S  S K ++   
Sbjct: 11 LMNALMRL--NQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEA--SGPSKKTAKLHV 66

Query: 61 AKLA 64
          A   
Sbjct: 67 AVKV 70

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (101), Expect = 3e-06
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 105 REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
           + GP HA  F   V +DG T+E+     + K A+   A   L ++
Sbjct: 32  QSGPVHAPVFTMSVDVDGTTYEASG--PSKKTAKLHVAVKVLQAM 74

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (135), Expect = 1e-10
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 169 WDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFY-GKAGRTKKK 227
           +   +  K  L E   RE LP P+YET++        F S+V V  + +      ++KK 
Sbjct: 22  YPPQITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKL 79

Query: 228 AEMKAAKVAYTAL 240
           AE  AA V   + 
Sbjct: 80  AEQTAAIVCLRSQ 92

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.9 bits (134), Expect = 2e-10
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
            K  L  + RR+ L  P+Y +++        F + VT+    ++S  + K+ K AE  AA
Sbjct: 28  PKMCLLEWCRREKLPQPVYETVQ--RTIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAA 85

Query: 143 KVALFSLA 150
            V L S  
Sbjct: 86  IVCLRSQG 93

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (117), Expect = 3e-08
 Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 9/108 (8%)

Query: 2   YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
            K  + E C +++   P Y T++     D  F S V+V    + S++  KS K ++  AA
Sbjct: 28  PKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAA 85

Query: 62  KLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPA 109
            +       P               L    R      P     R GP+
Sbjct: 86  IVCLRSQGLPEGRL-----GEESPSLNKRKREAPDQDP--GGPRSGPS 126

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.3 bits (130), Expect = 3e-10
 Identities = 22/75 (29%), Positives = 33/75 (44%)

Query: 170 DDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAE 229
           D   FY + L++     G+ +   E    G PH   F   V +D + F    GR+K++A 
Sbjct: 4   DTPGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEAR 63

Query: 230 MKAAKVAYTALIERK 244
             AAK+A   L    
Sbjct: 64  NAAAKLAVDILDNEN 78

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.9 bits (116), Expect = 2e-08
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
          Y  K+ +   Q       Y  +   G  HD RF   V ++   F      +S +E++N A
Sbjct: 9  YMDKLNKYR-QMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFP-EAKGRSKQEARNAA 66

Query: 61 AKLAF 65
          AKLA 
Sbjct: 67 AKLAV 71

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (115), Expect = 3e-08
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
           Y   L  Y +   +          GP H   F  +V ID   F   +  ++ ++A +AAA
Sbjct: 9   YMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAK-GRSKQEARNAAA 67

Query: 143 KVALFSL 149
           K+A+  L
Sbjct: 68  KLAVDIL 74

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.6 bits (126), Expect = 6e-10
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 176 KNVLHELSLREGLPVPLYETIKC-GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
           KN L +L+  E  P   Y  +   G  H P F+  VEV+G+VF G  G TKKKA++ AA+
Sbjct: 7   KNALMQLN--EIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGS-GPTKKKAKLHAAE 63

Query: 235 VAYTALIE 242
            A  + ++
Sbjct: 64  KALRSFVQ 71

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.8 bits (111), Expect = 8e-08
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 3  KTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
          K  + +L   +     +Y  +   G  H P F  SV VNG  F    S  + K+++  AA
Sbjct: 7  KNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEG--SGPTKKKAKLHAA 62

Query: 62 KLAF 65
          + A 
Sbjct: 63 EKAL 66

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.6 bits (108), Expect = 2e-07
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 11/79 (13%)

Query: 72  PPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEF 130
           P P  P      K+ L      K      Y  + + GP HA  F   V ++G  FE    
Sbjct: 1   PGPVLP------KNALMQLNEIKPG--LQYMLLSQTGPVHAPLFVMSVEVNGQVFEG--S 50

Query: 131 FKNLKQAEHAAAKVALFSL 149
               K+A+  AA+ AL S 
Sbjct: 51  GPTKKKAKLHAAEKALRSF 69

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

 Score = 50.5 bits (120), Expect = 3e-09
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 176 KNVLHELSLREGLPVPLYETIKC-GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
              L EL++++G  +P Y   +  G PH   F     V+  V  G  G +K+ A+  AA+
Sbjct: 3   VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGS-GTSKQVAKRVAAE 61

Query: 235 VAYTAL 240
              T  
Sbjct: 62  KLLTKF 67

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

 Score = 48.2 bits (114), Expect = 3e-08
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 1  MYKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQND 59
          M    +QEL  QK W LP Y+  +  G  H   F  +  V         S  S + ++  
Sbjct: 1  MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETG--SGTSKQVAKRV 58

Query: 60 AAKLAFLHFTS 70
          AA+     F +
Sbjct: 59 AAEKLLTKFKT 69

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

 Score = 45.9 bits (108), Expect = 1e-07
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 84  KSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
              LQ  A +K    P Y+  +E GP H   F     ++           + + A+  AA
Sbjct: 3   VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETG--SGTSKQVAKRVAA 60

Query: 143 KVALFSL 149
           +  L   
Sbjct: 61  EKLLTKF 67

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (122), Expect = 3e-09
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKA-GRTKKKAEMKAA 233
            KN L+    +  +  P YE    G  +   F+  V V+G  + G      KK A+  AA
Sbjct: 8   IKNFLYAWCGKRKMT-PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAA 66

Query: 234 KVAYTALIERKLI 246
           +     L+    +
Sbjct: 67  RDFVNYLVRINEV 79

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.6 bits (115), Expect = 4e-08
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
           K  +   C  KR   P Y     G  +  +F   V V G ++    +  + K++Q++AA
Sbjct: 8  IKNFLYAWC-GKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAA 66

Query: 62 KLA 64
          +  
Sbjct: 67 RDF 69

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.8 bits (105), Expect = 7e-07
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
            K+ L  +  ++ + +P Y     G  +   F   V ++G  +  +    N K A+  AA
Sbjct: 8   IKNFLYAWCGKRKM-TPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAA 66

Query: 143 KVALFSLA 150
           +  +  L 
Sbjct: 67  RDFVNYLV 74

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 2e-08
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 175 YKNVLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
               L EL +++G  +P Y   +  G  H   F     V+  +    +G +KK A+  AA
Sbjct: 11  PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEI-GSGTSKKLAKRNAA 69

Query: 234 KVAYTAL 240
                 +
Sbjct: 70  AKMLLRV 76

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 1e-07
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 73  PPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFF 131
           P  P   +C     LQ    +K    P Y+  +E GPAH   F     ++          
Sbjct: 1   PVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEI--GSG 58

Query: 132 KNLKQAEHAAAKVALFSL 149
            + K A+  AA   L  +
Sbjct: 59  TSKKLAKRNAAAKMLLRV 76

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 2e-07
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
              +QEL  QK W LP Y+  +  G  H   F  +  V         S  S K ++ +A
Sbjct: 11 PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEI--GSGTSKKLAKRNA 68

Query: 61 AKLA 64
          A   
Sbjct: 69 AAKM 72

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.9 bits (116), Expect = 3e-08
 Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVS----CKSSKESQ 57
           K ++ +   QK      Y   + G DH+  F + +++        +       + K + 
Sbjct: 28 AKARLNQYF-QKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAA 86

Query: 58 NDAAKLA 64
             A   
Sbjct: 87 QSCALSL 93

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (113), Expect = 9e-08
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGK-----AGRTKKKAE 229
            K  L++   +E +    Y+  + G  H  +FI+ + +  +    +      G  KK A 
Sbjct: 28  AKARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAA 86

Query: 230 MKAAKVAYTALIERKLI 246
              A      L    +I
Sbjct: 87  QSCALSLVRQLYHLGVI 103

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (98), Expect = 9e-06
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTID----GHTFESLEFFKNLKQAE 138
            K+ L  Y +++ +    Y   + GP H  SF A +TI     G    + E   N K A 
Sbjct: 28  AKARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAA 86

Query: 139 HAAAKVALFSL 149
            + A   +  L
Sbjct: 87  QSCALSLVRQL 97

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.7 bits (113), Expect = 4e-08
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
             S +     ++N+ +  +  +RE GPAH  +F     +     E        K ++  A
Sbjct: 9   PISQVHEIGIKRNM-TVHFKVLREEGPAHMKNFITACIVGSIVTE--GEGNGKKVSKKRA 65

Query: 142 AKVALFSL 149
           A+  L  L
Sbjct: 66  AEKMLVEL 73

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.4 bits (107), Expect = 3e-07
 Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
            ++V E+  ++  ++      ++G  H   F ++  V  +           K S+  AA
Sbjct: 9  PISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSIVTE--GEGNGKKVSKKRAA 66

Query: 62 KLA 64
          +  
Sbjct: 67 EKM 69

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.8 bits (103), Expect = 1e-06
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 175 YKNVLHELSLREGLPVPLYETIKC-GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
             + +HE+ ++  + V  ++ ++  G  HM  FI+   V   +     G  KK ++ +AA
Sbjct: 9   PISQVHEIGIKRNMTVH-FKVLREEGPAHMKNFITACIVG-SIVTEGEGNGKKVSKKRAA 66

Query: 234 KVAYTAL 240
           +     L
Sbjct: 67  EKMLVEL 73

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 6e-08
 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
           Y  ++   A+ K   +  Y     G      F  +  +    +         ++A+  AA
Sbjct: 16  YIGLINRIAQ-KKRLTVNYEQCASGVHGPEGFHYKCKMGQKEYSI-GTGSTKQEAKQLAA 73

Query: 143 KVALFSL 149
           K+A   +
Sbjct: 74  KLAYLQI 80

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 1e-07
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
           Y  +++ ++ ++ L V  YE    G      F    ++  + +    G TK++A+  AAK
Sbjct: 16  YIGLINRIAQKKRLTVN-YEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAK 74

Query: 235 VAYTALIERK 244
           +AY  ++  +
Sbjct: 75  LAYLQILSEE 84

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 8e-07
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 2/73 (2%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
          Y   +  +  +KR ++        G      F     +     +S  +  + +E++  AA
Sbjct: 16 YIGLINRIAQKKRLTVNYE-QCASGVHGPEGFHYKCKMGQ-KEYSIGTGSTKQEAKQLAA 73

Query: 62 KLAFLHFTSPPPP 74
          KLA+L   S    
Sbjct: 74 KLAYLQILSEETG 86

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.3 bits (104), Expect = 7e-07
 Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 1/64 (1%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
           K ++  L          Y T+K     DP       V   +   +   ++ K +   AA
Sbjct: 8  AKRQLYSLI-GYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAA 66

Query: 62 KLAF 65
          + A 
Sbjct: 67 ENAL 70

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.4 bits (94), Expect = 2e-05
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
            K  L+ L     L    Y T+K        + +     DG V     GR  K A ++AA
Sbjct: 8   AKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAA 66

Query: 234 KVA 236
           + A
Sbjct: 67  ENA 69

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.2 bits (98), Expect = 6e-06
 Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 3/77 (3%)

Query: 3  KTKVQELCHQKRWSLPRY-STMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
           +++ ++   ++   P Y    + G      F   V V         +  + K ++ +AA
Sbjct: 9  ISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVAT--GTGPNKKIAKKNAA 66

Query: 62 KLAFLHFTSPPPPPPPN 78
          +   L           +
Sbjct: 67 EAMLLQLGYKASTSLQD 83

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.8 bits (97), Expect = 8e-06
 Identities = 12/65 (18%), Positives = 18/65 (27%)

Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV 235
            + L ++        P Y  +            M    G       G  KK A+  AA+ 
Sbjct: 9   ISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEA 68

Query: 236 AYTAL 240
               L
Sbjct: 69  MLLQL 73

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (89), Expect = 8e-05
 Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 3/67 (4%)

Query: 84  KSVLQNYARRKNLDSPLY-SSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
            S L    + +    P Y      G      F  +V +            N K A+  AA
Sbjct: 9   ISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVAT--GTGPNKKIAKKNAA 66

Query: 143 KVALFSL 149
           +  L  L
Sbjct: 67  EAMLLQL 73

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 1e-05
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 83  YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
              VL  Y  +            +   H  +F  RVT+   T        + K A+H AA
Sbjct: 4   PIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCT--GEGTSKKLAKHRAA 61

Query: 143 KVALFSL 149
           + A+  L
Sbjct: 62  EAAINIL 68

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 1e-05
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 2  YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
              + E    K  ++P Y   + D   H P F   V+V  ++        S K +++ A
Sbjct: 4  PIQVLHEYG-MKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCT--GEGTSKKLAKHRA 60

Query: 61 AKLA 64
          A+ A
Sbjct: 61 AEAA 64

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 8e-05
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
              VLHE  ++                H+PTF   V V      G+ G +KK A+ +AA+
Sbjct: 4   PIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGE-GTSKKLAKHRAAE 62

Query: 235 VAYTAL 240
            A   L
Sbjct: 63  AAINIL 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	365
d1o0wa2	69	RNase III, C-terminal domain {Thermotoga maritima	99.81
d1di2a_	69	Double-stranded RNA-binding protein A, second dsRB	99.79
d1o0wa2	69	RNase III, C-terminal domain {Thermotoga maritima	99.78
d2nuga2	68	RNase III, C-terminal domain {Aquifex aeolicus [Ta	99.76
d1x48a1	76	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.75
d2nuga2	68	RNase III, C-terminal domain {Aquifex aeolicus [Ta	99.75
d1di2a_	69	Double-stranded RNA-binding protein A, second dsRB	99.74
d2dixa1	73	Interferon-inducible double stranded RNA-dependent	99.74
d1x48a1	76	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.74
d2cpna1	76	TAR RNA-binding protein 2 {Human (Homo sapiens) [T	99.73
d1qu6a1	90	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.73
d1qu6a1	90	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.73
d2cpna1	76	TAR RNA-binding protein 2 {Human (Homo sapiens) [T	99.73
d1uhza_	89	staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10	99.73
d2dixa1	73	Interferon-inducible double stranded RNA-dependent	99.73
d1x49a1	85	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.72
d1whqa_	99	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.72
d1uhza_	89	staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10	99.71
d1x49a1	85	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.71
d1qu6a2	89	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.7
d1qu6a2	89	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.7
d1whqa_	99	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.7
d1ekza_	76	Staufen, domain III {Fruit fly (Drosophila melanog	99.69
d1x47a1	85	Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1ekza_	76	Staufen, domain III {Fruit fly (Drosophila melanog	99.67
d1uila_	113	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.66
d1uila_	113	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.66
d1x47a1	85	Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1whna_	128	tRNA-dihydrouridine synthase 2-like, Dus2l (231001	99.63
d1whna_	128	tRNA-dihydrouridine synthase 2-like, Dus2l (231001	99.56
d2b7va1	71	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.56
d1t4oa_	81	RNase III, C-terminal domain {Baker's yeast (Sacch	99.55
d2b7va1	71	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.53
d1t4oa_	81	RNase III, C-terminal domain {Baker's yeast (Sacch	99.5
d2b7ta1	73	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.45
d2b7ta1	73	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.44
d2dmya1	84	Spermatid perinuclear RNA-binding protein {Human (	99.43
d2dmya1	84	Spermatid perinuclear RNA-binding protein {Human (	99.4

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=2.7e-20  Score=139.13  Aligned_cols=67  Identities=28%  Similarity=0.452  Sum_probs=64.0

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhc
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHF   68 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L   68 (365)
                      +|||.||||||++++.+|.|++ ...||+|.+.|++.|.|+|..++.| .|+|||+|||+||+.||+.|
T Consensus         1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~~~g-~g~sKK~Aeq~AA~~aL~~L   68 (69)
T d1o0wa2           1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATG-KGRTKKEAEKEAARIAYEKL   68 (69)
T ss_dssp             CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCCCCEEEEEEeeCCCCCceEEEEEEECCEEEEEE-EeCCHHHHHHHHHHHHHHHh
Confidence            6999999999999999999998 7789999999999999999999886 99999999999999999987

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

Probab=99.79  E-value=7.5e-20  Score=136.78  Aligned_cols=67  Identities=28%  Similarity=0.421  Sum_probs=63.2

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFT   69 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~   69 (365)
                      |||+.||||||+++|++|.|++ ..+||+|++.|+|.|.|+|..+ .| .|+|||+||++||+.||+.|.
T Consensus         1 ~Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~~-~g-~g~sKK~Aeq~AA~~aL~~L~   68 (69)
T d1di2a_           1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVE-TG-SGTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHcCCCCCeEEEEEeeCCCCCcceEEEEEEeeEEE-ec-CcCcHHHHHHHHHHHHHHHhc
Confidence            8999999999999999999998 6789999999999999999875 65 999999999999999999875

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=3e-19  Score=133.35  Aligned_cols=67  Identities=34%  Similarity=0.425  Sum_probs=64.6

Q ss_pred             chhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHH
Q 038761          174 FYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL  240 (365)
Q Consensus       174 n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L  240 (365)
                      |||+.||||||++++.+|.|++. ..|++|.+.|++.|.|+|..++.|.|.|||+||++||+.||+.|
T Consensus         1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~~~g~g~sKK~Aeq~AA~~aL~~L   68 (69)
T d1o0wa2           1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL   68 (69)
T ss_dssp             CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCCCCEEEEEEeeCCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            79999999999999999999987 77999999999999999999999999999999999999999987

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.76  E-value=3.3e-19  Score=132.82  Aligned_cols=67  Identities=24%  Similarity=0.333  Sum_probs=62.5

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFT   69 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~   69 (365)
                      +|||.||||||++++.+|.|++ ...||+|++.|+|.|.|+|.. +.| .|+|||+|||+||+.||+.|.
T Consensus         1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g-~g~sKK~Aeq~AA~~aL~~Lk   68 (68)
T d2nuga2           1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYR-TLG-EGKSKKEAEQRAAEELIKLLE   68 (68)
T ss_dssp             CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTEE-EEE-EESSHHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHcCCCCCEEEEEEeeCCCCCcEEEEEEEECCEE-EEE-ecCCHHHHHHHHHHHHHHHhC
Confidence            6999999999999999999998 778999999999999999976 475 899999999999999999874

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=7.1e-19  Score=133.84  Aligned_cols=70  Identities=21%  Similarity=0.375  Sum_probs=64.3

Q ss_pred             hHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCCC
Q 038761            2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPP   73 (365)
Q Consensus         2 ~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~~   73 (365)
                      ||++||||||++++++ .|++.++||+|.+.|+|.|.|+|..|+.| .|.|||+|||+||+.||+.|...++
T Consensus         1 Y~s~L~E~~Qk~~~~~-~~~~~~~G~~h~~~F~~~v~v~~~~~~~g-~G~sKK~Aeq~AA~~Al~~L~~~~~   70 (76)
T d1x48a1           1 YIGLVNSFAQKKKLSV-NYEQCEPNSELPQRFICKCKIGQTMYGTG-SGVTKQEAKQLAAKEAYQKLLKSPP   70 (76)
T ss_dssp             HHHHHHHHHHHTTCCE-EEEECCCSSSSSCCEEEEEEESSCEEEEE-EESSHHHHHHHHHHHHHHHHHHSCC
T ss_pred             ChHHHHHHHHHhCCCC-ccccCCcCCCCCCcEEEEEEECCEEeCCc-CccHHHHHHHHHHHHHHHHHHccCC
Confidence            7999999999999876 77777789999999999999999999886 9999999999999999999987543

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.75  E-value=1.6e-18  Score=128.96  Aligned_cols=67  Identities=28%  Similarity=0.327  Sum_probs=63.1

Q ss_pred             chhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHH
Q 038761          174 FYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALI  241 (365)
Q Consensus       174 n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~  241 (365)
                      |||+.||||||++++++|.|+++ +.|+.|.+.|++.|.|+|.. +.|.|.|||.||++||+.||+.|+
T Consensus         1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g~g~sKK~Aeq~AA~~aL~~Lk   68 (68)
T d2nuga2           1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIKLLE   68 (68)
T ss_dssp             CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHcCCCCCEEEEEEeeCCCCCcEEEEEEEECCEE-EEEecCCHHHHHHHHHHHHHHHhC
Confidence            79999999999999999999976 88999999999999999964 799999999999999999999884

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

Probab=99.74  E-value=2.9e-18  Score=128.01  Aligned_cols=66  Identities=27%  Similarity=0.366  Sum_probs=62.6

Q ss_pred             hhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHH
Q 038761          175 YKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALI  241 (365)
Q Consensus       175 ~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~  241 (365)
                      ||+.||||||++++++|.|+++ ++|+.|.+.|++.|.|+|.. ..|.|+|||+||++||+.||..|+
T Consensus         2 Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~-~~g~g~sKK~Aeq~AA~~aL~~L~   68 (69)
T d1di2a_           2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFV-ETGSGTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCCCeEEEEEeeCCCCCcceEEEEEEeeEE-EecCcCcHHHHHHHHHHHHHHHhc
Confidence            7899999999999999999987 78999999999999999976 499999999999999999999986

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.9e-18  Score=129.40  Aligned_cols=67  Identities=21%  Similarity=0.218  Sum_probs=61.6

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +|++.||||||++++ +|.|++ ..+||+|++.|++.|.|++. +..| .|+|||+||++||+.||..|..
T Consensus         3 ~Pis~L~E~~qk~~~-~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~g-~g~sKK~Aeq~AA~~al~~L~~   70 (73)
T d2dixa1           3 TPIQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDI-TCTG-EGTSKKLAKHRAAEAAINILKA   70 (73)
T ss_dssp             CHHHHHHHHHHHTTC-CCEEEEEEEECSSSSCEEEEEEEETTE-EEEE-CSSCTTHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCC-CCEEEEeeeeCCCCCcEEEEEEEEEEE-EEEe-ccccHHHHHHHHHHHHHHHHHh
Confidence            589999999999997 799998 77899999999999999998 5575 9999999999999999999864

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=4e-18  Score=129.61  Aligned_cols=71  Identities=24%  Similarity=0.338  Sum_probs=65.8

Q ss_pred             hhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhhccc
Q 038761          175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLI  246 (365)
Q Consensus       175 ~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~~~  246 (365)
                      |+++||||||++++++ .|++.++||+|.+.|++.|.|+|..|+.|.|.|||+||++||+.||+.|...++.
T Consensus         1 Y~s~L~E~~Qk~~~~~-~~~~~~~G~~h~~~F~~~v~v~~~~~~~g~G~sKK~Aeq~AA~~Al~~L~~~~~~   71 (76)
T d1x48a1           1 YIGLVNSFAQKKKLSV-NYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPK   71 (76)
T ss_dssp             HHHHHHHHHHHTTCCE-EEEECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             ChHHHHHHHHHhCCCC-ccccCCcCCCCCCcEEEEEEECCEEeCCcCccHHHHHHHHHHHHHHHHHHccCCC
Confidence            7999999999999977 6777788999999999999999999999999999999999999999999887443

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.6e-18  Score=130.60  Aligned_cols=66  Identities=29%  Similarity=0.408  Sum_probs=61.7

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhc
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHF   68 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L   68 (365)
                      +||+.||||||++++.+|.|++ .+.|++|.+.|+|.|.|++.. +.| .|+|||+|+|+||+.||..|
T Consensus        10 npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g-~G~SKK~Aeq~AA~~aL~~L   76 (76)
T d2cpna1          10 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFI-EIG-SGTSKKLAKRNAAAKMLLRV   76 (76)
T ss_dssp             CHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTEE-EEE-EESSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCCCEEEEeeeeccCCCccEEEEEEeccee-ecc-ccccHHHHHHHHHHHHHHhC
Confidence            6899999999999999999998 678999999999999999986 576 99999999999999999876

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.3e-18  Score=136.65  Aligned_cols=69  Identities=26%  Similarity=0.422  Sum_probs=64.0

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP   71 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~   71 (365)
                      +||++||||||++++ +|.|.+ ..+||+|++.|+|.|.|+|..++.| .|.|||+||++||+.||+.|...
T Consensus        14 ~y~s~LqE~~Qk~~~-~p~y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g-~G~sKK~Aeq~AA~~aL~~L~~~   83 (90)
T d1qu6a1          14 FFMEELNTYRQKQGV-VLKYQELPNSGPPHDRRFTFQVIIDGREFPEG-EGRSKKEAKNAAAKLAVEILNKE   83 (90)
T ss_dssp             SHHHHHHHHHHHHTC-CCEEEEEESCBTTTBCCEEEEEESSSSCCCEE-ECCSSHHHHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHhCC-CCcEEEEEeeCCCCCceEEEEEEECceeeecc-CCCcHHHHHHHHHHHHHHHHHhh
Confidence            589999999999988 688887 7889999999999999999999886 99999999999999999999764

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.8e-18  Score=135.75  Aligned_cols=76  Identities=32%  Similarity=0.444  Sum_probs=69.4

Q ss_pred             CCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhhccc
Q 038761          170 DDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLI  246 (365)
Q Consensus       170 ~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~~~  246 (365)
                      ....+||++||||||++++ .|.|.+. +.||.|.+.|+|.|.|+|..+++|.|.|||+||++||+.||+.|....+.
T Consensus        10 ~~~~~y~s~LqE~~Qk~~~-~p~y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Aeq~AA~~aL~~L~~~~~~   86 (90)
T d1qu6a1          10 LSAGFFMEELNTYRQKQGV-VLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKA   86 (90)
T ss_dssp             SSSCSHHHHHHHHHHHHTC-CCEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCCSC
T ss_pred             CCCCCHHHHHHHHHHHhCC-CCcEEEEEeeCCCCCceEEEEEEECceeeeccCCCcHHHHHHHHHHHHHHHHHhhCCC
Confidence            3567999999999999988 6888876 88999999999999999999999999999999999999999999886554

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.1e-17  Score=127.14  Aligned_cols=70  Identities=23%  Similarity=0.273  Sum_probs=65.3

Q ss_pred             CCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHH
Q 038761          170 DDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL  240 (365)
Q Consensus       170 ~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L  240 (365)
                      ....|||+.||||||++++++|.|++. +.|+.|.+.|++.|.+++. .+.|.|.|||+||++||+.||..|
T Consensus         6 ~~~~npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~-~~~g~G~SKK~Aeq~AA~~aL~~L   76 (76)
T d2cpna1           6 QSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRV   76 (76)
T ss_dssp             CCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHcCCCCCEEEEeeeeccCCCccEEEEEEecce-eeccccccHHHHHHHHHHHHHHhC
Confidence            456899999999999999999999987 7899999999999999996 489999999999999999999986

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=3.8e-18  Score=133.65  Aligned_cols=68  Identities=15%  Similarity=0.193  Sum_probs=64.1

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +||+.||||||+++|.+|.|++ ...|++|.+.|+|.|+|+|..+ +| .|.|||+||+.||+.||+.|..
T Consensus         7 ~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~-~g-~g~SKK~Ae~~AA~~aL~~l~~   75 (89)
T d1uhza_           7 GPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVA-TG-TGPNKKIAKKNAAEAMLLQLGY   75 (89)
T ss_dssp             CHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHTS
T ss_pred             CcHHHHHHHHHhcCCCCCEEEeccccccCCceeEEEEEEEeeeec-cc-cchHHHHHHHHHHHHHHHHhCc
Confidence            6899999999999999999998 6789999999999999999986 65 9999999999999999999975

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=8.6e-18  Score=126.76  Aligned_cols=69  Identities=30%  Similarity=0.328  Sum_probs=64.5

Q ss_pred             cchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761          173 VFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER  243 (365)
Q Consensus       173 ~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~  243 (365)
                      .||++.||||||++++ .|.|+++ ++||.|.+.|+++|.|++. ++.|.|.|||+||++||+.||+.|+..
T Consensus         2 K~Pis~L~E~~qk~~~-~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~g~g~sKK~Aeq~AA~~al~~L~~~   71 (73)
T d2dixa1           2 KTPIQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDI-TCTGEGTSKKLAKHRAAEAAINILKAN   71 (73)
T ss_dssp             CCHHHHHHHHHHHTTC-CCEEEEEEEECSSSSCEEEEEEEETTE-EEEECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHhCCC-CCEEEEeeeeCCCCCcEEEEEEEEEEE-EEEeccccHHHHHHHHHHHHHHHHHhc
Confidence            6899999999999987 7999987 8899999999999999996 679999999999999999999999874

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=5.3e-18  Score=131.69  Aligned_cols=74  Identities=30%  Similarity=0.422  Sum_probs=68.4

Q ss_pred             CCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhhc
Q 038761          170 DDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK  244 (365)
Q Consensus       170 ~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~  244 (365)
                      +...+||++||||||++++. |.|.++ +.||+|.+.|+|.|.|+|..++.|.|.|||+||+.||+.||..|....
T Consensus         4 ~~~~~yk~~L~E~~Qk~~~~-~~y~~~~~~Gp~h~~~F~~~v~v~g~~~~~g~g~sKK~Aeq~AA~~aL~~L~~~~   78 (85)
T d1x49a1           4 DTPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNEN   78 (85)
T ss_dssp             CCTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCchhHHHHHHHHHHhcCCC-CeEEEEEecCCCCCceEEEEEecCceEeeccccccHHHHHHHHHHHHHHHHHHcC
Confidence            45789999999999999995 889876 889999999999999999999999999999999999999999998753

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.6e-18  Score=138.42  Aligned_cols=68  Identities=19%  Similarity=0.336  Sum_probs=62.2

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEE-eecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSF-HSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~-~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +||+.||||||++++ +|.|++.+.|++|.+.|+|.|.|+|..| +.| .|+|||+|||+||+.||+.|..
T Consensus         7 ~~Ks~LqE~~qk~k~-~P~Y~~~~~G~~h~~~F~~~v~v~g~~~~~~g-~g~sKK~AEq~AA~~al~~L~~   75 (99)
T d1whqa_           7 GIKNFLYAWCGKRKM-TPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMG-NSTNKKDAQSNAARDFVNYLVR   75 (99)
T ss_dssp             SSHHHHHHHHHHTTC-CCEEEEEEEECSSSEEEEEEEECTTCSCCEEE-EESSHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhCCC-CCeEEEecccCCCCceEEEEEEeccccceecc-CCccHHHHHHHHHHHHHHHHHH
Confidence            589999999999998 5999997789999999999999999876 555 9999999999999999999854

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=2e-17  Score=129.44  Aligned_cols=71  Identities=24%  Similarity=0.210  Sum_probs=66.2

Q ss_pred             CcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761          172 GVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER  243 (365)
Q Consensus       172 ~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~  243 (365)
                      ..||++.||||||+++|++|.|+++ +.|+.|.+.|+|.|+|+|..+ +|.|.|||+||+.||+.||+.|...
T Consensus         5 ~~~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~-~g~g~SKK~Ae~~AA~~aL~~l~~~   76 (89)
T d1uhza_           5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVA-TGTGPNKKIAKKNAAEAMLLQLGYK   76 (89)
T ss_dssp             SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTSS
T ss_pred             CCCcHHHHHHHHHhcCCCCCEEEeccccccCCceeEEEEEEEeeeec-cccchHHHHHHHHHHHHHHHHhCcc
Confidence            4699999999999999999999987 789999999999999999875 9999999999999999999999653

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=4.7e-18  Score=132.00  Aligned_cols=69  Identities=26%  Similarity=0.371  Sum_probs=63.9

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP   71 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~   71 (365)
                      +||++||||||++++. |.|++ ...||+|.+.|+|.|+|+|..++.| .|.|||+||+.||+.||..|...
T Consensus         8 ~yk~~L~E~~Qk~~~~-~~y~~~~~~Gp~h~~~F~~~v~v~g~~~~~g-~g~sKK~Aeq~AA~~aL~~L~~~   77 (85)
T d1x49a1           8 FYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEA-KGRSKQEARNAAAKLAVDILDNE   77 (85)
T ss_dssp             HHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCE-EESSHHHHHHHHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHHhcCCC-CeEEEEEecCCCCCceEEEEEecCceEeecc-ccccHHHHHHHHHHHHHHHHHHc
Confidence            4899999999999995 78887 7789999999999999999999876 99999999999999999999874

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4.6e-18  Score=133.17  Aligned_cols=72  Identities=19%  Similarity=0.310  Sum_probs=65.8

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCCCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPPP   74 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~~~   74 (365)
                      +||++||||||++++. |.|++.+.|++|.+.|.|+|.|+|..|+.| .|+|||+||+.||+.||..|.....+
T Consensus        15 n~~s~L~E~~Qk~~~~-~~y~~~~~g~~h~~~F~~~v~i~g~~~~~g-~G~sKK~Akq~AA~~Al~~L~~~~~~   86 (89)
T d1qu6a2          15 NYIGLINRIAQKKRLT-VNYEQCASGVHGPEGFHYKCKMGQKEYSIG-TGSTKQEAKQLAAKLAYLQILSEETG   86 (89)
T ss_dssp             CCHHHHHHHHHHSCCE-EEEEEEEECSSSSSEEEEEEEEETTBCCEE-EESSHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             CHHHHHHHHHHhcCCC-cceeeeccCCCCCCceEEEEEECCcccccc-ccchHHHHHHHHHHHHHHHHHccCCC
Confidence            6999999999999986 589888889999999999999999999886 99999999999999999999875543

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.4e-17  Score=130.36  Aligned_cols=74  Identities=20%  Similarity=0.265  Sum_probs=68.7

Q ss_pred             CCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhhcc
Q 038761          171 DGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKL  245 (365)
Q Consensus       171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~~  245 (365)
                      ...|||++||||||++++. |.|++.+.|+.|.+.|.|+|.|+|..++.|.|+|||+||+.||+.||..|...+.
T Consensus        12 ~~~n~~s~L~E~~Qk~~~~-~~y~~~~~g~~h~~~F~~~v~i~g~~~~~g~G~sKK~Akq~AA~~Al~~L~~~~~   85 (89)
T d1qu6a2          12 SMGNYIGLINRIAQKKRLT-VNYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEET   85 (89)
T ss_dssp             CCCCCHHHHHHHHHHSCCE-EEEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHHHCCC
T ss_pred             cccCHHHHHHHHHHhcCCC-cceeeeccCCCCCCceEEEEEECCccccccccchHHHHHHHHHHHHHHHHHccCC
Confidence            4679999999999999996 5799889999999999999999999999999999999999999999999988653

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2e-17  Score=131.92  Aligned_cols=73  Identities=23%  Similarity=0.228  Sum_probs=66.6

Q ss_pred             CcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCEEE-eeEeccCHHHHHHHHHHHHHHHHHhhcc
Q 038761          172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVF-YGKAGRTKKKAEMKAAKVAYTALIERKL  245 (365)
Q Consensus       172 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~~~-~~G~G~SKK~Ae~~AA~~aL~~L~~~~~  245 (365)
                      ..|||+.||||||++++ .|.|++.+.|+.|.++|++.|.|+|..| +.|.|.|||+||+.||+.||+.|.+...
T Consensus         5 ~~~~Ks~LqE~~qk~k~-~P~Y~~~~~G~~h~~~F~~~v~v~g~~~~~~g~g~sKK~AEq~AA~~al~~L~~~~~   78 (99)
T d1whqa_           5 SSGIKNFLYAWCGKRKM-TPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINE   78 (99)
T ss_dssp             CCSSHHHHHHHHHHTTC-CCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CccHHHHHHHHHHhCCC-CCeEEEecccCCCCceEEEEEEeccccceeccCCccHHHHHHHHHHHHHHHHHHcCC
Confidence            57999999999999998 4999988889999999999999998664 8899999999999999999999987633

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=1.3e-17  Score=126.69  Aligned_cols=67  Identities=15%  Similarity=0.251  Sum_probs=61.2

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +|++.||||||+++++ |.|++ ..+||+|++.|+|+|.|+|.. +.| .|.|||+|||+||+.||..|..
T Consensus         8 ~Pvs~L~E~~q~~~~~-~~y~~~~~~G~~h~~~F~~~v~v~~~~-~~g-~G~SKK~Aeq~AA~~al~~L~~   75 (76)
T d1ekza_           8 SPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSIV-TEG-EGNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETTEE-EEE-CCCSTTSSSHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHhCCCC-CeEEEEEeeCCCCCeEEEEEEEEeeeE-eee-ccCcHHHHHHHHHHHHHHHHHc
Confidence            5899999999999997 78987 778999999999999999875 575 9999999999999999999864

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5.8e-17  Score=125.69  Aligned_cols=68  Identities=19%  Similarity=0.274  Sum_probs=60.1

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +|||.||||||++++.+|.|.+.. +++|...|.|+|.|+|..++.| .|+|||+||++||+.||+.|..
T Consensus        10 ~p~s~LqE~~Qk~~~~~p~Y~~~~-~~g~~~~F~~~v~i~g~~~~~g-~G~sKK~Aeq~AA~~AL~~L~~   77 (85)
T d1x47a1          10 SEVCILHEYMQRVLKVRPVYNFFE-CENPSEPFGASVTIDGVTYGSG-TASSKKLAKNKAARATLEILIP   77 (85)
T ss_dssp             CHHHHHHHHHHHHTCSCCEEEEEE-CSSSSCCEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHhCCCCCCeEEEe-cCCCCCCEEEEEEECCEEEecC-CcchHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999833 2334557999999999999886 9999999999999999999854

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=1.5e-17  Score=126.47  Aligned_cols=71  Identities=21%  Similarity=0.310  Sum_probs=65.2

Q ss_pred             CCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHh
Q 038761          170 DDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE  242 (365)
Q Consensus       170 ~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~  242 (365)
                      ....||++.||||||+++++ |.|+++ +.|+.|++.|+|+|.|++. ++.|.|.|||+||++||..||..|+.
T Consensus         4 ~~~k~Pvs~L~E~~q~~~~~-~~y~~~~~~G~~h~~~F~~~v~v~~~-~~~g~G~SKK~Aeq~AA~~al~~L~~   75 (76)
T d1ekza_           4 GDKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSI-VTEGEGNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CCCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETTE-EEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHhCCCC-CeEEEEEeeCCCCCeEEEEEEEEeee-EeeeccCcHHHHHHHHHHHHHHHHHc
Confidence            35689999999999999998 799977 7899999999999999985 57999999999999999999999975

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=1.6e-16  Score=129.42  Aligned_cols=71  Identities=21%  Similarity=0.236  Sum_probs=65.6

Q ss_pred             cchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEE-----CCEEEeeEeccCHHHHHHHHHHHHHHHHHhhc
Q 038761          173 VFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEV-----DGEVFYGKAGRTKKKAEMKAAKVAYTALIERK  244 (365)
Q Consensus       173 ~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i-----~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~  244 (365)
                      .|+|++||||||+++++ |.|++.+.||+|.+.|+|+|.|     ++..++.|.|.|||+|||+||+.||+.|....
T Consensus        26 ~n~Ks~LqE~~Qk~k~~-p~Y~i~~~Gp~H~~~F~~~v~i~~~~~~~~~~~~G~G~sKK~AEq~AA~~~l~~L~~~g  101 (113)
T d1uila_          26 ENAKARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLG  101 (113)
T ss_dssp             HHHHHHHHHHHHHSCCC-CCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHhCCCC-CceEEeeeccCCCCeEEEEEEEeeeccCCeEEeecccchHHHHHHHHHHHHHHHHHHcC
Confidence            58999999999999986 9999888999999999999999     66778899999999999999999999998753

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=5.3e-17  Score=132.38  Aligned_cols=68  Identities=13%  Similarity=0.217  Sum_probs=61.0

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEE-----CCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSV-----NGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v-----~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +||++||||||++++. |.|++...||+|.+.|+|+|.|     ++..++.| .|.|||+|||+||+.||+.|..
T Consensus        27 n~Ks~LqE~~Qk~k~~-p~Y~i~~~Gp~H~~~F~~~v~i~~~~~~~~~~~~G-~G~sKK~AEq~AA~~~l~~L~~   99 (113)
T d1uila_          27 NAKARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFARE-HGSNKKLAAQSCALSLVRQLYH   99 (113)
T ss_dssp             HHHHHHHHHHHHSCCC-CCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEEC-CCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCC-CceEEeeeccCCCCeEEEEEEEeeeccCCeEEeec-ccchHHHHHHHHHHHHHHHHHH
Confidence            4799999999999875 9999988899999999999999     56666676 9999999999999999998864

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.9e-16  Score=121.73  Aligned_cols=72  Identities=28%  Similarity=0.344  Sum_probs=63.8

Q ss_pred             CCCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHh
Q 038761          170 DDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE  242 (365)
Q Consensus       170 ~~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~  242 (365)
                      ....|||+.||||||++++..|.|.+... ..+...|+++|.|+|..++.|.|.|||.||+.||+.||+.|..
T Consensus         6 ~~~K~p~s~LqE~~Qk~~~~~p~Y~~~~~-~g~~~~F~~~v~i~g~~~~~g~G~sKK~Aeq~AA~~AL~~L~~   77 (85)
T d1x47a1           6 PNGKSEVCILHEYMQRVLKVRPVYNFFEC-ENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIP   77 (85)
T ss_dssp             TTCCCHHHHHHHHHHHHTCSCCEEEEEEC-SSSSCCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCS
T ss_pred             CCCcCHHHHHHHHHHHhCCCCCCeEEEec-CCCCCCEEEEEEECCEEEecCCcchHHHHHHHHHHHHHHHHHH
Confidence            34689999999999999999999998742 2345579999999999999999999999999999999999953

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=2e-16  Score=131.63  Aligned_cols=68  Identities=25%  Similarity=0.287  Sum_probs=61.1

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS   70 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~   70 (365)
                      +||+.||||||++++.+|.|++...  .|++.|++.|.|+|..|++++.++|||+|||+||+.||+.|..
T Consensus        27 ~pKs~LqE~~Qk~~~~~P~Y~~~~~--~~~~~F~~~V~v~g~~~~s~~g~~SKK~AEq~AA~~AL~~Lg~   94 (128)
T d1whna_          27 TPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGL   94 (128)
T ss_dssp             CHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHhcCCCCCeEEEeec--ccCCCCEEEEEECCeEeeccCCcccHHHHHHHHHHHHHHHhCC
Confidence            6899999999999999999998554  4778999999999999988634589999999999999999975

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=3e-15  Score=124.36  Aligned_cols=71  Identities=31%  Similarity=0.292  Sum_probs=64.2

Q ss_pred             CCCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCEEEeeEec-cCHHHHHHHHHHHHHHHHHh
Q 038761          170 DDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAG-RTKKKAEMKAAKVAYTALIE  242 (365)
Q Consensus       170 ~~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~~~~~G~G-~SKK~Ae~~AA~~aL~~L~~  242 (365)
                      ....|||+.||||||++++.+|.|+++..  .|++.|+++|.|+|..|+.+.| +|||+|||+||+.||+.|..
T Consensus        23 p~~~~pKs~LqE~~Qk~~~~~P~Y~~~~~--~~~~~F~~~V~v~g~~~~s~~g~~SKK~AEq~AA~~AL~~Lg~   94 (128)
T d1whna_          23 PPQITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGL   94 (128)
T ss_dssp             CTTCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHhcCCCCCeEEEeec--ccCCCCEEEEEECCeEeeccCCcccHHHHHHHHHHHHHHHhCC
Confidence            45689999999999999999999998865  4678999999999999988765 89999999999999999964

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=3.2e-15  Score=111.88  Aligned_cols=67  Identities=31%  Similarity=0.461  Sum_probs=61.3

Q ss_pred             CCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761          171 DGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER  243 (365)
Q Consensus       171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~  243 (365)
                      ...|+++.|||+|++     +.|+++ ++|+.|.+.|+++|.|+|..+ .|.|.|||+||++||+.||+.|.+.
T Consensus         2 ~~Knpv~~L~E~~~~-----~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Ak~~AA~~aL~~L~~~   69 (71)
T d2b7va1           2 SGKNPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL   69 (71)
T ss_dssp             CSSCHHHHHHHHCCS-----CEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHccC-----CeEEEeeeeCCCCCCeEEEEEEECCEEE-EecCCCHHHHHHHHHHHHHHHHHcc
Confidence            468999999999874     589987 789999999999999999987 8999999999999999999999875

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=4.9e-15  Score=113.65  Aligned_cols=73  Identities=27%  Similarity=0.157  Sum_probs=63.4

Q ss_pred             CCCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEE-CCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761          170 DDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEV-DGEVFYGKAGRTKKKAEMKAAKVAYTALIER  243 (365)
Q Consensus       170 ~~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i-~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~  243 (365)
                      ....|+|+.|+||||+.++. |.|++.+.|.+|...|++.|.+ ++..++.|.|.|||.|||+||+.||+.+...
T Consensus         3 ~id~~~K~~L~e~~~~~g~~-P~Y~~~~~~~~~~~~f~v~~~v~~~~~~~~g~g~SKK~AEq~AA~~aL~~~~~l   76 (81)
T d1t4oa_           3 KLDMNAKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKML   76 (81)
T ss_dssp             CCCTTHHHHHHHHHCCGGGC-CEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHH
T ss_pred             ccccCHHHHHHHHHhcCCCC-cEEEEeccCCCCCCCEEEEEEEecCceEEecccchhhHHHHHHHHHHHHhccHH
Confidence            46789999999999999986 9999997776666777787776 5677889999999999999999999988754

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=3.3e-15  Score=111.74  Aligned_cols=62  Identities=26%  Similarity=0.271  Sum_probs=56.3

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFT   69 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~   69 (365)
                      +|++.|||||++     +.|++ ..+||+|.+.|+|.|.|+|..| .| .|+|||+||++||+.||+.|.
T Consensus         5 npv~~L~E~~~~-----~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g-~G~SKK~Ak~~AA~~aL~~L~   67 (71)
T d2b7va1           5 NPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFF-EG-SGRNKKLAKARAAQSALATVF   67 (71)
T ss_dssp             CHHHHHHHHCCS-----CEEEEEECCCCTTTCCEEEEEECSSCEE-EE-EESSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHccC-----CeEEEeeeeCCCCCCeEEEEEEECCEEE-Ee-cCCCHHHHHHHHHHHHHHHHH
Confidence            589999999864     47998 7789999999999999999998 65 999999999999999999874

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=1e-14  Score=111.74  Aligned_cols=66  Identities=20%  Similarity=0.124  Sum_probs=55.6

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEEC-CEEEeecccccCcchHHHHHHHHHHHhc
Q 038761            1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVN-GLSFHSSVSCKSSKESQNDAAKLAFLHF   68 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~-g~~~~~gg~g~SKK~Aeq~AA~~AL~~L   68 (365)
                      ++|+.||||||+.++. |.|++...|++|.+.|.+.|.|. |..++.| .|.|||+|||+||+.||+.+
T Consensus         7 ~~K~~L~e~~~~~g~~-P~Y~~~~~~~~~~~~f~v~~~v~~~~~~~~g-~g~SKK~AEq~AA~~aL~~~   73 (81)
T d1t4oa_           7 NAKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTG-VGRNIKIAGIRAAENALRDK   73 (81)
T ss_dssp             THHHHHHHHHCCGGGC-CEEEEEECCCSSCCCEEEEEECTTCCEEEEE-EESSHHHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHhcCCCC-cEEEEeccCCCCCCCEEEEEEEecCceEEec-ccchhhHHHHHHHHHHHHhc
Confidence            5899999999999986 99999656656667788888774 5666675 99999999999999999864

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=5.5e-14  Score=105.57  Aligned_cols=67  Identities=30%  Similarity=0.341  Sum_probs=57.6

Q ss_pred             ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761            1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP   71 (365)
Q Consensus         1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~   71 (365)
                      ++|+.|+++-+.+  ..|.|++ .++|++|.+.|+|.|.|+|..| .| .|+|||+|||+||+.||+.|.+.
T Consensus         5 ~pK~~l~~L~e~~--~~~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g-~G~SKK~Aeq~AA~~aL~~l~~~   72 (73)
T d2b7ta1           5 LPKNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EG-SGPTKKKAKLHAAEKALRSFVQF   72 (73)
T ss_dssp             SSHHHHHHHHHHC--SCCEEEEEEEECSSSSCEEEEEEESSSSEE-EE-EESSHHHHHHHHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHhcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-Ec-CCCcHHHHHHHHHHHHHHHHhhC
Confidence            4678877775543  4679999 6789999999999999999998 65 89999999999999999998653

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=2.1e-13  Score=102.34  Aligned_cols=66  Identities=38%  Similarity=0.558  Sum_probs=54.5

Q ss_pred             chhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHh
Q 038761          174 FYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE  242 (365)
Q Consensus       174 n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~  242 (365)
                      ++|+.|+++-+.  .+.|.|+++ +.|+.|.+.|++.|+|+|..+ .|.|.|||+||++||+.||+.|..
T Consensus         5 ~pK~~l~~L~e~--~~~~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Aeq~AA~~aL~~l~~   71 (73)
T d2b7ta1           5 LPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ   71 (73)
T ss_dssp             SSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHhc--CCCCEEEEEEeeCCCCCceEEEEEEECCEEE-EcCCCcHHHHHHHHHHHHHHHHhh
Confidence            344444444332  256899987 789999999999999999987 999999999999999999999865

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.2e-13  Score=104.99  Aligned_cols=67  Identities=27%  Similarity=0.382  Sum_probs=58.6

Q ss_pred             CCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761          171 DGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER  243 (365)
Q Consensus       171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~  243 (365)
                      ...|+++.|+|+.     +.|.|+++ ++||+|.+.|++.|.|+|..+ .|.|.|||+||++||+.||+.|+..
T Consensus        10 ~~~n~~~~L~e~~-----~~~~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~g~G~SKK~Aeq~AA~~aL~~L~~~   77 (84)
T d2dmya1          10 DLMNALMRLNQIR-----PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGYP   77 (84)
T ss_dssp             SCTHHHHHHHHHS-----CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTCC
T ss_pred             cccCHHHHHHHhC-----CCCeEEEEEeeCCCCCCeEEEEEEECCEEE-EcCCCCHHHHHHHHHHHHHHHhCCC
Confidence            3467778888863     56899987 889999999999999999887 7999999999999999999999653

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.1e-13  Score=105.10  Aligned_cols=63  Identities=22%  Similarity=0.325  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761            2 YKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP   71 (365)
Q Consensus         2 ~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~   71 (365)
                      +++.|+|+     .+.|.|++ .++||+|.+.|+|.|.|+|..+ .| .|+|||+|||+||+.||+.|..+
T Consensus        14 ~~~~L~e~-----~~~~~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~g-~G~SKK~Aeq~AA~~aL~~L~~~   77 (84)
T d2dmya1          14 ALMRLNQI-----RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EA-SGPSKKTAKLHVAVKVLQAMGYP   77 (84)
T ss_dssp             HHHHHHHH-----SCSCCCEEEEEESCSSSCEEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHh-----CCCCeEEEEEeeCCCCCCeEEEEEEECCEEE-Ec-CCCCHHHHHHHHHHHHHHHhCCC
Confidence            45566665     25579999 7789999999999999999988 65 99999999999999999999764