Citrus Sinensis ID: 038821

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQELSAIHALASRNFFSPAIIEGGGTAYSHPDKKILYLR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHcHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
ESVKLRQQIQMSLNsnrhlmgdslSSLTVKELKQLENRLERGITRfrfkkhemplAEIEFLQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQELSAIHALasrnffspaiiegggtayshpdkkilylr
Flexible Loop (DISEMBL)
ESVKLRQQIQMslnsnrhlmgdsLSSLTVKELKQLENRLERGitrfrfkkhemplAEIEFLQKREIelenesvclrSKVCKSVRSEMERFQQANTVTGQELSAIHALASRNFFSPAIIEgggtayshpdkkilylr
Low Complexity Region (SEG)
ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQELSAIHALASRNFFSPAIIEGGGTAYSHPDKKILYLR
Disordered region (IsUnstruct)
*************************************RLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKVCKSVR*****F**ANTVTGQELSAIHALASRNFFSPAIIEGGGTAYS**********
Disordered Region (DISOPRED)
ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRS***********************************************************
Disordered Region (DISEMBL)
********IQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQELSAIHALASRNFFSPAIIEGGGTAYSHPDKKILYLR
Disordered Region (DISPRO)
*SVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKVCKSVRSEMER***************HALASRNFFSPAIIE*****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQELSAIHALASRNFFSPAIIEGGGTAYSHPDKKILYLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
Q38836	230	Agamous-like MADS-box pro	yes	no	0.955	0.565	0.598	3e-35
Q8RU31	265	MADS-box transcription fa	yes	no	0.852	0.437	0.446	2e-24
P29385	246	Agamous-like MADS-box pro	no	no	0.691	0.382	0.542	5e-21
Q2QW53	270	MADS-box transcription fa	no	no	0.580	0.292	0.556	1e-19
P29381	248	Agamous-like MADS-box pro	no	no	0.617	0.338	0.547	3e-19
Q40704	236	MADS-box transcription fa	no	no	0.838	0.483	0.420	7e-19
P17839	252	Floral homeotic protein A	no	no	0.926	0.5	0.396	1e-18
Q40872	242	Floral homeotic protein A	N/A	no	0.801	0.450	0.431	1e-18
Q01540	252	Floral homeotic protein A	N/A	no	0.926	0.5	0.381	3e-18
Q40168	248	Floral homeotic protein A	N/A	no	0.713	0.391	0.448	7e-18

>sp|Q38836|AGL11_ARATH Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=1 SV=1

 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 108/142 (76%), Gaps = 12/142 (8%)

Query: 1   ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
           ES KLRQQIQ   NSNR+LMGDSLSSL+VKELKQ+ENRLE+ I+R R KKHE+ L EIE 
Sbjct: 93  ESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIEN 152

Query: 61  LQKREIELENESVCLRSKVCKSVRSEMERFQQAN--TVTGQELSAIHALASRNFFSPAII 118
            QKREIEL+NE++ LR+KV     +E+ER+QQ +   V+G E++AI ALASRN+F+ +I+
Sbjct: 153 AQKREIELDNENIYLRTKV-----AEVERYQQHHHQMVSGSEINAIEALASRNYFAHSIM 207

Query: 119 EG-----GGTAYSHPDKKILYL 135
                   G +YS PDKKIL+L
Sbjct: 208 TAGSGSGNGGSYSDPDKKILHL 229

Probable transcription factor.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RU31|MAD21_ORYSJ MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 87/130 (66%), Gaps = 14/130 (10%)

Query: 1   ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
           E+ K+R QIQ   N+NRHL+G+S+ ++T KELK LENRLE+GI+R R KKHE+  +EIE+
Sbjct: 95  EAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEY 154

Query: 61  LQKREIELENESVCLRSKVCKSVRSEMERFQQA-------------NTVTGQELSAIHA- 106
           +QKRE +L+NE++ LR+KV ++ R+E +  Q A              + +G EL A+ A 
Sbjct: 155 MQKREADLQNENMFLRAKVAEAERAEHDDQQAAEDDEMAPAPAVGGGSSSGTELEALPAT 214

Query: 107 LASRNFFSPA 116
             +R ++ PA
Sbjct: 215 FDTREYYQPA 224

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P29385|AGL5_ARATH Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=1 SV=1

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 75/105 (71%), Gaps = 11/105 (10%)

Query: 1   ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
           E+ KLR+QI+   N NRH++G+SL SL  KELK LE+RLE+GI+R R KKHEM +AEIE+
Sbjct: 108 EASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEY 167

Query: 61  LQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQELSAIH 105
           +QKREIEL+N+++ LRSK+     +E    QQ      QE S IH
Sbjct: 168 MQKREIELQNDNMYLRSKI-----TERTGLQQ------QESSVIH 201

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2QW53|MAD13_ORYSJ MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/79 (55%), Positives = 68/79 (86%)

Query: 1   ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
           ES KLR QIQM  N+N+HL+GD++S+L++KELKQLE+RLE+GI++ R +K+E+  +EI +
Sbjct: 96  ESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINY 155

Query: 61  LQKREIELENESVCLRSKV 79
           + KREIEL+N+++ LR+K+
Sbjct: 156 MAKREIELQNDNMDLRTKI 174

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P29381|AGL1_ARATH Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/84 (54%), Positives = 67/84 (79%)

Query: 1   ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
           E+ KLR+QI+   NSNRH++G+SL SL  KELK LE RLE+GI+R R KK+E+ +AEIE+
Sbjct: 108 EASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEY 167

Query: 61  LQKREIELENESVCLRSKVCKSVR 84
           +QKRE+EL++ ++ LR+K+ +  R
Sbjct: 168 MQKREMELQHNNMYLRAKIAEGAR 191

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/126 (42%), Positives = 84/126 (66%), Gaps = 12/126 (9%)

Query: 1   ESVKLRQQIQMSLNSN-RHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIE 59
           ES KLRQQI    N+N R ++GDS++++++++LKQ+ENRLE+GI + R +K+E+  AE+E
Sbjct: 93  ESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVE 152

Query: 60  FLQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQELSAIH------ALASRNFF 113
           ++QKRE+EL+N+++ LRSKV      E ER QQ   + G   ++ +         SRNF 
Sbjct: 153 YMQKREVELQNDNMYLRSKVV-----ENERGQQPLNMMGAASTSEYDHMVNNPYDSRNFL 207

Query: 114 SPAIIE 119
              I++
Sbjct: 208 QVNIMQ 213

Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P17839|AG_ARATH Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 78/131 (59%), Gaps = 5/131 (3%)

Query: 1   ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
           ES KLRQQI    NSNR LMG+++ S++ KEL+ LE RLER ITR R KK+E+  +EI++
Sbjct: 109 ESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDY 168

Query: 61  LQKREIELENESVCLRSKVCKSVRSE-----MERFQQANTVTGQELSAIHALASRNFFSP 115
           +QKRE++L N++  LR+K+ ++ R+      M        +     +      SRN+F  
Sbjct: 169 MQKREVDLHNDNQILRAKIAENERNNPSISLMPGGSNYEQLMPPPQTQSQPFDSRNYFQV 228

Query: 116 AIIEGGGTAYS 126
           A ++     YS
Sbjct: 229 AALQPNNHHYS 239

Probable transcription factor involved in the control of organ identity during the early development of flowers. Is required for normal development of stamens and carpels in the wild-type flower. Plays a role in maintaining the determinacy of the floral meristem. Acts as C class cadastral protein by repressing the A class floral homeotic genes like APETALA1. Forms an heterodimer via the K-box domain with either SEPALATTA1/AGL2, SEPALATTA2/AGL4, SEPALLATA3/AGL9 or AGL6 that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40872|AG_PANGI Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 78/116 (67%), Gaps = 7/116 (6%)

Query: 1   ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
           E+ KLRQ+I     +NR++MG+SL SLTV++LK LE +LE+GI+R R KK+E+  AEIE+
Sbjct: 109 EASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEY 168

Query: 61  LQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQ---ELSAIHALASRNFF 113
           +QK+EI+L N +  LR+K+ ++ R++    Q  N + G    EL+   +   RN+ 
Sbjct: 169 MQKKEIDLHNNNQYLRAKIAENERAQ----QHMNLMPGSSDYELAPPQSFDGRNYI 220

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Panax ginseng (taxid: 4054)

>sp|Q01540|AG_BRANA Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 77/131 (58%), Gaps = 5/131 (3%)

Query: 1   ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
           ES KLRQQI    NSNR LMG+++ S++ KEL+ LE RL+R + R R KK+E+  AEI++
Sbjct: 109 ESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEIDY 168

Query: 61  LQKREIELENESVCLRSKVCKSVRSE-----MERFQQANTVTGQELSAIHALASRNFFSP 115
           +QKRE++L N++  LR+K+ ++ R+      M        +     +      SRN+F  
Sbjct: 169 MQKREVDLHNDNQLLRAKIAENERNNPSMSLMPGGSNYEQIMPPPQTQPQPFDSRNYFQV 228

Query: 116 AIIEGGGTAYS 126
           A ++     YS
Sbjct: 229 AALQPNNHHYS 239

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Brassica napus (taxid: 3708)

>sp|Q40168|AG_SOLLC Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 1   ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
           E+ KLR QI   +N NR++MG++L+ + +KELK LE R+E+GI++ R KK+E+  AEIE+
Sbjct: 109 EASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEY 168

Query: 61  LQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTG 98
           +QKRE++L N +  LR+K+ ++ R++  + QQ N + G
Sbjct: 169 MQKREVDLHNNNQYLRAKIAETERAQ-HQHQQMNLMPG 205

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Solanum lycopersicum (taxid: 4081)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
23194453	223	MADS box protein GHMADS-2 [Gossypium hir	0.948	0.578	0.786	1e-49
27763670	227	mads-box transcription factor [Momordica	0.955	0.572	0.719	8e-49
307000606	227	mads-box transcription factor [Siraitia	0.955	0.572	0.719	1e-48
255539414	287	mads box protein, putative [Ricinus comm	0.948	0.449	0.772	4e-48
122938395	224	MADS-box protein MADS5 [Gossypium hirsut	0.955	0.580	0.742	7e-48
449517951	225	PREDICTED: agamous-like MADS-box protein	0.955	0.577	0.744	8e-48
449447607	224	PREDICTED: LOW QUALITY PROTEIN: agamous-	0.955	0.580	0.744	9e-48
224145114	223	predicted protein [Populus trichocarpa]	0.948	0.578	0.742	1e-47
225460269	223	PREDICTED: MADS-box protein 5 [Vitis vin	0.955	0.582	0.725	3e-47
351727234	222	MADS domain transporter AGL11 [Glycine m	0.948	0.581	0.718	5e-47

>gi|23194453|gb|AAN15183.1| MADS box protein GHMADS-2 [Gossypium hirsutum] gi|122938397|gb|ABM69044.1| MADS-box protein MADS6 [Gossypium hirsutum] gi|207298817|gb|ACI23560.1| agamous-like protein 1 [Gossypium barbadense]

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 107/136 (78%), Positives = 116/136 (85%), Gaps = 7/136 (5%)

Query: 1   ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
           ES KLRQQIQM  NSNRHLMGDSLSSLTVKELKQ+ENRLERGITR R KKHEM LAEIEF
Sbjct: 93  ESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQVENRLERGITRIRSKKHEMLLAEIEF 152

Query: 61  LQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQELSAIHALASRNFFSPAIIEG 120
           LQKREIELENESVCLR+K+     +E+ER QQAN VTG EL+AI ALASRNFFSP +IE 
Sbjct: 153 LQKREIELENESVCLRTKI-----AEIERLQQANMVTGPELNAIQALASRNFFSPNVIE- 206

Query: 121 GGTAYSHP-DKKILYL 135
             +AYSHP DKKIL+L
Sbjct: 207 HPSAYSHPSDKKILHL 222

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27763670|gb|AAO20104.1| mads-box transcription factor [Momordica charantia]

 Score =  198 bits (503), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 100/139 (71%), Positives = 116/139 (83%), Gaps = 9/139 (6%)

Query: 1   ESVKLRQQIQMSLNSN----RHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLA 56
           ES KLRQQIQM  NSN    RHLMGDSLS+LTVKELKQLENRLERGITR R KKHEM LA
Sbjct: 93  ESAKLRQQIQMLQNSNSNLVRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLA 152

Query: 57  EIEFLQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQELSAIHALASRNFFSPA 116
           EIE+LQKREIELENE+VC+R+K+     +E+ER QQAN V+GQEL+AI ALASRNFF+P 
Sbjct: 153 EIEYLQKREIELENENVCIRTKI-----AEVERLQQANMVSGQELNAIQALASRNFFTPN 207

Query: 117 IIEGGGTAYSHPDKKILYL 135
           ++EGG   +SH DKK+L+L
Sbjct: 208 MMEGGAVTFSHQDKKMLHL 226

Source: Momordica charantia

Species: Momordica charantia

Genus: Momordica

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307000606|gb|ADN22973.1| mads-box transcription factor [Siraitia grosvenorii]

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/139 (71%), Positives = 116/139 (83%), Gaps = 9/139 (6%)

Query: 1   ESVKLRQQIQMSLNSN----RHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLA 56
           ES KLRQQIQM  NSN    RHLMGDSLS+LTVKELKQLENRLERGITR R KKHEM LA
Sbjct: 93  ESAKLRQQIQMLQNSNSNLVRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLA 152

Query: 57  EIEFLQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQELSAIHALASRNFFSPA 116
           EIE+LQKREIELENE+VC+R+K+     +E+ER QQAN V+GQEL+AI ALASRNFF+P 
Sbjct: 153 EIEYLQKREIELENENVCIRTKI-----AEVERLQQANMVSGQELNAIQALASRNFFNPN 207

Query: 117 IIEGGGTAYSHPDKKILYL 135
           ++EGG   +SH DKK+L+L
Sbjct: 208 MMEGGAVTFSHQDKKMLHL 226

Source: Siraitia grosvenorii

Species: Siraitia grosvenorii

Genus: Siraitia

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539414|ref|XP_002510772.1| mads box protein, putative [Ricinus communis] gi|223551473|gb|EEF52959.1| mads box protein, putative [Ricinus communis]

 Score =  195 bits (496), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 105/136 (77%), Positives = 114/136 (83%), Gaps = 7/136 (5%)

Query: 1   ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
           ES KLRQQIQM  NSNRHLMGDSLSSLTVKELKQLENRLERGITR R KKHE+ LAEIE+
Sbjct: 138 ESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHELLLAEIEY 197

Query: 61  LQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQELSAIHALASRNFFSPAIIEG 120
           LQKREIELENESVCLR+K+     +E+ER QQAN VTG EL+AI AL SRNFF   +IEG
Sbjct: 198 LQKREIELENESVCLRTKI-----AEIERLQQANMVTGAELNAIQALTSRNFFGSHMIEG 252

Query: 121 GGTAYSHP-DKKILYL 135
           G  AYSHP DKKIL+L
Sbjct: 253 GA-AYSHPSDKKILHL 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|122938395|gb|ABM69043.1| MADS-box protein MADS5 [Gossypium hirsutum]

 Score =  194 bits (494), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 101/136 (74%), Positives = 114/136 (83%), Gaps = 6/136 (4%)

Query: 1   ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
           ES KLRQQIQM  NS+RHLMGDSLSSLTVKELKQLENRLERGITR R KKHEM LAEIE+
Sbjct: 93  ESAKLRQQIQMLQNSSRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEY 152

Query: 61  LQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQELSAIHALASRNFFSPAIIE- 119
            QKRE+ELENESVCLR+K+     +E+ER ++AN VTG EL+AI ALASRNFF+P +IE 
Sbjct: 153 FQKREVELENESVCLRAKI-----AEIERVEEANMVTGAELNAIQALASRNFFTPNVIER 207

Query: 120 GGGTAYSHPDKKILYL 135
           G  T YSH DKKIL+L
Sbjct: 208 GTPTPYSHHDKKILHL 223

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517951|ref|XP_004166007.1| PREDICTED: agamous-like MADS-box protein AGL11-like isoform 2 [Cucumis sativus] gi|4103342|gb|AAD01742.1| agamous-like putative transcription factor [Cucumis sativus]

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 102/137 (74%), Positives = 116/137 (84%), Gaps = 7/137 (5%)

Query: 1   ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
           ES KLRQQIQM  NSNRHLMGDSLS+LTVKELKQLENRLERGITR R KKHEM LAEIE+
Sbjct: 93  ESAKLRQQIQMLQNSNRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEY 152

Query: 61  LQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQELSAIHALA-SRNFFSPAIIE 119
           LQKREIELENE+VC+R+K+     +E+ER QQAN V+GQEL+AI ALA SRNFFSP I+E
Sbjct: 153 LQKREIELENENVCIRTKI-----AEVERVQQANMVSGQELNAIQALANSRNFFSPNIME 207

Query: 120 -GGGTAYSHPDKKILYL 135
             G  +YSH DKK+L+L
Sbjct: 208 PAGPVSYSHQDKKMLHL 224

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447607|ref|XP_004141559.1| PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL11-like [Cucumis sativus]

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 102/137 (74%), Positives = 116/137 (84%), Gaps = 7/137 (5%)

Query: 1   ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
           ES KLRQQIQM  NSNRHLMGDSLS+LTVKELKQLENRLERGITR R KKHEM LAEIE+
Sbjct: 92  ESAKLRQQIQMLQNSNRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEY 151

Query: 61  LQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQELSAIHALA-SRNFFSPAIIE 119
           LQKREIELENE+VC+R+K+     +E+ER QQAN V+GQEL+AI ALA SRNFFSP I+E
Sbjct: 152 LQKREIELENENVCIRTKI-----AEVERVQQANMVSGQELNAIQALANSRNFFSPNIME 206

Query: 120 -GGGTAYSHPDKKILYL 135
             G  +YSH DKK+L+L
Sbjct: 207 PAGPVSYSHQDKKMLHL 223

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145114|ref|XP_002325531.1| predicted protein [Populus trichocarpa] gi|222862406|gb|EEE99912.1| predicted protein [Populus trichocarpa]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 101/136 (74%), Positives = 116/136 (85%), Gaps = 7/136 (5%)

Query: 1   ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
           ES KLRQQIQM  NSNRHLMGD++S+L+VKELKQLENRLERGITR R KKHE+ LAEIE+
Sbjct: 93  ESAKLRQQIQMLQNSNRHLMGDAVSNLSVKELKQLENRLERGITRIRSKKHELLLAEIEY 152

Query: 61  LQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQELSAIHAL-ASRNFFSPAIIE 119
           LQKREIELENESVCLR+K+     +E+ER QQAN VTG EL+AI AL ASRNFF+P ++E
Sbjct: 153 LQKREIELENESVCLRTKI-----AEVERLQQANMVTGAELNAIQALAASRNFFAPHLLE 207

Query: 120 GGGTAYSHPDKKILYL 135
            GGTAY H DKKIL+L
Sbjct: 208 -GGTAYPHNDKKILHL 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460269|ref|XP_002281890.1| PREDICTED: MADS-box protein 5 [Vitis vinifera]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 98/135 (72%), Positives = 110/135 (81%), Gaps = 5/135 (3%)

Query: 1   ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
           ES KLRQQIQM  NSNRHLMGDSL+SLTVKELKQLENRLERGITR R KKHE+ LAEIE+
Sbjct: 93  ESAKLRQQIQMLQNSNRHLMGDSLASLTVKELKQLENRLERGITRIRSKKHELLLAEIEY 152

Query: 61  LQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQELSAIHALASRNFFSPAIIEG 120
           LQKREIELENESV LR+K+     +E+ER QQAN V+  E +AI AL SRNFF P +IEG
Sbjct: 153 LQKREIELENESVYLRTKI-----AEVERLQQANMVSTHEFNAIQALVSRNFFQPNMIEG 207

Query: 121 GGTAYSHPDKKILYL 135
           G T Y  PDKK+L+L
Sbjct: 208 GSTGYPLPDKKVLHL 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727234|ref|NP_001236130.1| MADS domain transporter AGL11 [Glycine max] gi|87138095|gb|ABD28284.1| MADS domain transporter AGL11 [Glycine max]

 Score =  192 bits (487), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 97/135 (71%), Positives = 113/135 (83%), Gaps = 6/135 (4%)

Query: 1   ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
           ES KLRQQIQM  NSNRHLMGD+LS+LTVKELKQLENRLERGITR R KKHEM LAEIE+
Sbjct: 93  ESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEY 152

Query: 61  LQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQELSAIHALASRNFFSPAIIEG 120
            QKREIELENE++CLR+K+     +++ER QQ N V+G EL+AI ALASRNFF+P ++E 
Sbjct: 153 FQKREIELENENLCLRTKI-----TDVERIQQVNMVSGPELNAIQALASRNFFNPNMLE- 206

Query: 121 GGTAYSHPDKKILYL 135
           GGT Y H DKKIL+L
Sbjct: 207 GGTVYPHSDKKILHL 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
TAIR|locus:2140578	256	STK "AT4G09960" [Arabidopsis t	0.955	0.507	0.605	2.4e-35
UNIPROTKB|Q40882	228	fbp11 "Fbp11 protein" [Petunia	0.955	0.570	0.557	2.7e-29
UNIPROTKB|Q43616	225	fbp7 "Floral binding protein n	0.948	0.573	0.565	2.4e-28
UNIPROTKB|Q2QW53	270	MADS13 "MADS-box transcription	0.764	0.385	0.467	1.3e-20
UNIPROTKB|Q9ZS30	264	gaga1 "MADS-box protein, GAGA1	0.985	0.507	0.378	2e-17
UNIPROTKB|Q40885	242	AG1 "Floral homeotic protein A	0.683	0.384	0.448	2.5e-17
UNIPROTKB|Q9ZS29	246	GAGA2 "MADS-box protein, GAGA2	0.977	0.540	0.385	6.7e-17
UNIPROTKB|Q10CQ1	246	MADS14 "MADS-box transcription	0.676	0.373	0.315	8.1e-10
TAIR|locus:2082618	240	AGL16 "AGAMOUS-like 16" [Arabi	0.786	0.445	0.299	6.2e-09
UNIPROTKB|Q6Q9I2	267	MADS15 "MADS-box transcription	0.625	0.318	0.352	7e-09

TAIR|locus:2140578 STK "AT4G09960" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 86/142 (60%), Positives = 109/142 (76%)

Query:     1 ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
             ES KLRQQIQ   NSNR+LMGDSLSSL+VKELKQ+ENRLE+ I+R R KKHE+ L EIE 
Sbjct:   119 ESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIEN 178

Query:    61 LQKREIELENESVCLRSKVCKSVRSEMERFQQAN--TVTGQELSAIHALASRNFFSPAII 118
              QKREIEL+NE++ LR+KV     +E+ER+QQ +   V+G E++AI ALASRN+F+ +I+
Sbjct:   179 AQKREIELDNENIYLRTKV-----AEVERYQQHHHQMVSGSEINAIEALASRNYFAHSIM 233

Query:   119 -----EGGGTAYSHPDKKILYL 135
                   G G +YS PDKKIL+L
Sbjct:   234 TAGSGSGNGGSYSDPDKKILHL 255

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048440 "carpel development" evidence=IMP

GO:0048481 "ovule development" evidence=IGI;RCA;IMP

GO:0048316 "seed development" evidence=IGI

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IGI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

UNIPROTKB|Q40882 fbp11 "Fbp11 protein" [Petunia x hybrida (taxid:4102)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 78/140 (55%), Positives = 96/140 (68%)

Query:     1 ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
             ES KLRQQIQ+  N+NRHL+G+ LS+L V+ELKQLENRLERGITR R KKHEM LAE E 
Sbjct:    93 ESKKLRQQIQLLQNTNRHLVGEGLSALNVRELKQLENRLERGITRIRSKKHEMILAETEN 152

Query:    61 LQKREIELENESVCLRSKVCKSVRSEMERFQQANTV--TGQELSAIHALASRNFFSPAII 118
             LQKREI+LE E+  LRSK+     +E ER Q+ + +  TGQE +A     +RN     ++
Sbjct:   153 LQKREIQLEQENTFLRSKI-----AENERLQELSMMPATGQEYNAFQQYFARNMLQLNMM 207

Query:   119 EGGGTAYSH-P--DKKILYL 135
             EGG  +Y   P  DKK L L
Sbjct:   208 EGGVPSYDPLPAHDKKSLQL 227

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q43616 fbp7 "Floral binding protein number 7" [Petunia x hybrida (taxid:4102)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 78/138 (56%), Positives = 94/138 (68%)

Query:     1 ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
             ES KLRQQIQ+  NSNRHL+G+ LSSL V+ELKQLENRLERGI R R KKHEM LAE E 
Sbjct:    93 ESKKLRQQIQLIQNSNRHLVGEGLSSLNVRELKQLENRLERGIARIRSKKHEMILAESED 152

Query:    61 LQKREIELENESVCLRSKVCKSVRSEMERFQQANTVT--GQELSAIHALASRNFFSPAII 118
             LQKREI+LE E+  LRSK+     +E ER Q+ + +   GQE +AI    +RN     ++
Sbjct:   153 LQKREIQLEQENAFLRSKI-----AENERLQELSMMPAGGQEYNAIQQYLARNMLQLNMM 207

Query:   119 EGGGTAYSHP-DKKILYL 135
             EG   +Y  P DKK L L
Sbjct:   208 EGV-PSYPLPSDKKSLDL 224

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q2QW53 MADS13 "MADS-box transcription factor 13" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 51/109 (46%), Positives = 80/109 (73%)

Query:     1 ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
             ES KLR QIQM  N+N+HL+GD++S+L++KELKQLE+RLE+GI++ R +K+E+  +EI +
Sbjct:    96 ESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINY 155

Query:    61 LQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQELSAIHALAS 109
             + KREIEL+N+++ LR+K+ +    E ++ QQ  TV       + A A+
Sbjct:   156 MAKREIELQNDNMDLRTKIAE----EEQQLQQV-TVARSAAMELQAAAA 199

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048283 "indeterminate inflorescence morphogenesis" evidence=IMP

GO:0048481 "ovule development" evidence=IMP

UNIPROTKB|Q9ZS30 gaga1 "MADS-box protein, GAGA1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 53/140 (37%), Positives = 79/140 (56%)

Query:     1 ESVKLRQQIQMSLNSNR----HLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLA 56
             E+ KLRQQI    N NR    ++MG+SL  + VK+LK LE +LE+ I+R R KK+E+  A
Sbjct:   125 EAAKLRQQIANLQNQNRQFYRNIMGESLGDMPVKDLKNLEGKLEKAISRIRAKKNELLFA 184

Query:    57 EIEFLQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQELSAIHA-LASRNFFSP 115
             EIE++QKRE+EL N +  LR+K+ ++ R++          +  EL   H     RN+   
Sbjct:   185 EIEYMQKRELELHNSNQFLRAKIVENERAQQHHMSLMPGSSDYELVTPHQPFDGRNYLQT 244

Query:   116 AIIEGGGTAYSHPDKKILYL 135
               ++     YS  D+  L L
Sbjct:   245 NDLQPNND-YSCQDQTPLQL 263

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q40885 AG1 "Floral homeotic protein AGAMOUS" [Petunia x hybrida (taxid:4102)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 44/98 (44%), Positives = 69/98 (70%)

Query:     1 ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
             E+ KLR QI    N NR+ +G+SL++L +++L+ LE ++E+GI++ R KK+E+  AEIE+
Sbjct:   109 EASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEY 168

Query:    61 LQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTG 98
             +QKREI+L N +  LR+K+     +E ER QQ N + G
Sbjct:   169 MQKREIDLHNNNQYLRAKI-----AETERSQQMNLMPG 201

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS29 GAGA2 "MADS-box protein, GAGA2" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 54/140 (38%), Positives = 81/140 (57%)

Query:     1 ESVKLRQQIQMSLNSNR----HLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLA 56
             E+ KLRQQI    N NR    ++MG+SL ++  K+LK LE++LE+GI + R KK+E+  A
Sbjct:   108 EAAKLRQQIANLQNQNRQFYRNIMGESLGNMPAKDLKNLESKLEKGIGKIRSKKNEILFA 167

Query:    57 EIEFLQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQELSAIHA-LASRNFFSP 115
             EIE++QKRE EL N +  LRSK+ ++ R++        + +  EL A H     RN+   
Sbjct:   168 EIEYMQKRENELHNSNQFLRSKIAENERAQQHMSLMPGS-SDYELVAPHQPFDGRNYLQV 226

Query:   116 AIIEGGGTAYSHPDKKILYL 135
               ++     YS  D+  L L
Sbjct:   227 NDLQPNNN-YSCQDQTPLQL 245

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q10CQ1 MADS14 "MADS-box transcription factor 14" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 143 (55.4 bits), Expect = 8.1e-10, P = 8.1e-10
 Identities = 29/92 (31%), Positives = 54/92 (58%)

Query:     4 KLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQK 63
             KL+ +++      +HLMG+ L SL +KEL+QLE +LE  +   R +K ++ L  I  LQ+
Sbjct:    97 KLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQR 156

Query:    64 REIELENESVCLRSKVCKSVRSEMERFQQANT 95
             +E  L+ E+  L+ ++ +  + + ++ Q   T
Sbjct:   157 KEKSLQEENKVLQKELVEKQKVQKQQVQWDQT 188

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2082618 AGL16 "AGAMOUS-like 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 6.2e-09, P = 6.2e-09
 Identities = 32/107 (29%), Positives = 61/107 (57%)

Query:     1 ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
             E+  L++Q+     ++R +MG+ LS L+V+ L+ LEN+LE  +   R KK +M + EI+ 
Sbjct:    92 EAAILKRQLHNLQENHRQMMGEELSGLSVEALQNLENQLELSLRGVRMKKDQMLIEEIQV 151

Query:    61 LQKREIELENESVCLRSKVCKSVRSEMERFQQANTVTGQELSAIHAL 107
             L +    +  E++ L  KV    +  ME  ++ + V G +++  ++L
Sbjct:   152 LNREGNLVHQENLDLHKKVNLMHQQNMELHEKVSEVEGVKIANKNSL 198

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0010440 "stomatal lineage progression" evidence=IMP

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

UNIPROTKB|Q6Q9I2 MADS15 "MADS-box transcription factor 15" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 136 (52.9 bits), Expect = 7.0e-09, P = 7.0e-09
 Identities = 31/88 (35%), Positives = 52/88 (59%)

Query:     4 KLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQK 63
             KL+ +I+     ++HLMG+ L SL +KEL+QLE +LE  +     +K  + L  I  LQK
Sbjct:    97 KLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESISELQK 156

Query:    64 REIELENESVCLRSKVC---KSVRSEME 88
             +E  L+ E+  L+ ++    K+VR + +
Sbjct:   157 KERSLQEENKALQKELVERQKNVRGQQQ 184

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XIX.1897.1 hypothetical protein (223 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	136
pfam01486	100	pfam01486, K-box, K-box region	1e-20

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 79.9 bits (198), Expect = 1e-20
 Identities = 36/79 (45%), Positives = 55/79 (69%)

Query: 1  ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEF 60
          E+ KL++Q +      RHL+G+ L SL++KEL+QLE +LE G+   R +K+E+ L +IE 
Sbjct: 20 EAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLENGLKHIRSRKNELLLNQIEE 79

Query: 61 LQKREIELENESVCLRSKV 79
          LQK+E EL+ E+  LR K+
Sbjct: 80 LQKKERELQEENRNLRQKL 98

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.88
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	95.69
KOG0014	195	consensus MADS box transcription factor [Transcrip	94.9
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	91.56
PRK15422	79	septal ring assembly protein ZapB; Provisional	91.27
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	90.27
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	87.33
cd07429	108	Cby_like Chibby, a nuclear inhibitor of Wnt/beta-c	84.08
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	82.3

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.88  E-value=2.7e-22  Score=140.47  Aligned_cols=79  Identities=44%  Similarity=0.634  Sum_probs=77.5

Q ss_pred             ChHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821            1 ESVKLRQQIQMSLNSNRHLMGDSLSSLTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV   79 (136)
Q Consensus         1 E~~~Lk~~~~~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l   79 (136)
                      |+++|+.+++.|+..+|+++|+||++||++||..||++|+.||.+||+||+++|.++|+.+++|+..+.++|..|+.++
T Consensus        20 e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~   98 (100)
T PF01486_consen   20 EIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI   98 (100)
T ss_pred             HHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999999998

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=95.69  E-value=0.17  Score=33.60  Aligned_cols=48  Identities=23%  Similarity=0.385  Sum_probs=38.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821           27 LTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV   79 (136)
Q Consensus        27 Ls~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l   79 (136)
                      +|++-|..||.++..++..|     .++..+|+.|+.+...+.++|..|....
T Consensus         1 M~~E~l~~LE~ki~~aveti-----~~Lq~e~eeLke~n~~L~~e~~~L~~en   48 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETI-----ALLQMENEELKEKNNELKEENEELKEEN   48 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            58899999999999999999     4566677888888777777777777665

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=94.90  E-value=0.0068  Score=45.93  Aligned_cols=64  Identities=30%  Similarity=0.318  Sum_probs=51.5

Q ss_pred             HHHHHHHHH---HHhhhhcCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHH
Q 038821            5 LRQQIQMSL---NSNRHLMGDSLSSLTV-KELKQLENRLERGITRFRFKKHEMPLAEIE-FLQKREIEL   68 (136)
Q Consensus         5 Lk~~~~~Lq---~~~R~l~GEdL~~Ls~-~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~-~l~kKe~~L   68 (136)
                      ++...+.+.   ...++++|+++.++++ .+|..+|.+++.++..+|..+...+..++. .++.+...+
T Consensus       119 ~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (195)
T KOG0014|consen  119 LKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNFQVLQEKEKSL  187 (195)
T ss_pred             hhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhhhhhcccchhc
Confidence            344445554   4489999999999999 999999999999999999999999988876 445444443

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=91.56  E-value=2  Score=30.53  Aligned_cols=46  Identities=24%  Similarity=0.325  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821           29 VKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV   79 (136)
Q Consensus        29 ~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l   79 (136)
                      ++.|..||++|..-+..|..-|.++     ..+-..-..|.-||..|+..+
T Consensus         7 ~~~l~~le~~l~~l~~~~~~LK~~~-----~~l~EEN~~L~~EN~~Lr~~l   52 (107)
T PF06156_consen    7 FDRLDQLEQQLGQLLEELEELKKQL-----QELLEENARLRIENEHLRERL   52 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888877777665544433     444455555666777777777

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=91.27  E-value=1.6  Score=29.58  Aligned_cols=43  Identities=21%  Similarity=0.371  Sum_probs=35.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038821           27 LTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVC   74 (136)
Q Consensus        27 Ls~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~   74 (136)
                      ||++=|.+||..+..|+.-|     .++..+|+.++.|-..|.+++..
T Consensus         1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            68889999999999999998     67777888888887766666554

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.27  E-value=3.7  Score=27.37  Aligned_cols=48  Identities=19%  Similarity=0.330  Sum_probs=38.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821           27 LTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV   79 (136)
Q Consensus        27 Ls~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l   79 (136)
                      ||++=|..||..+..|+.-|     .++.-+|+.|+.|...|..+-..+....
T Consensus         1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~r   48 (79)
T COG3074           1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQR   48 (79)
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence            68888999999999999988     6788888888888777766665555444

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=87.33  E-value=1.1  Score=28.67  Aligned_cols=30  Identities=40%  Similarity=0.564  Sum_probs=21.3

Q ss_pred             hhcCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 038821           18 HLMGDSLSSLTVKELKQLENRLERGITRFR   47 (136)
Q Consensus        18 ~l~GEdL~~Ls~~EL~~LE~qLe~~L~~IR   47 (136)
                      +..|+||+.||+.||..==..|+.=+.+++
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~   41 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLE   41 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999764444444444443

The function of this family is unknown.

>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins

Probab=84.08  E-value=2  Score=30.73  Aligned_cols=25  Identities=32%  Similarity=0.375  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821           55 LAEIEFLQKREIELENESVCLRSKV   79 (136)
Q Consensus        55 ~~qi~~l~kKe~~L~eeN~~L~~~l   79 (136)
                      ..++..++||...|+|||+.|+.|+
T Consensus        71 ~~e~~rlkkk~~~LeEENNlLklKi   95 (108)
T cd07429          71 GREVLRLKKKNQQLEEENNLLKLKI   95 (108)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778999999999999999998

Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=82.30  E-value=3.5  Score=26.44  Aligned_cols=28  Identities=29%  Similarity=0.383  Sum_probs=21.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821           52 EMPLAEIEFLQKREIELENESVCLRSKV   79 (136)
Q Consensus        52 ~ll~~qi~~l~kKe~~L~eeN~~L~~~l   79 (136)
                      +++.++|..|..+...|+.||..|+...
T Consensus        17 evLK~~I~eL~~~n~~Le~EN~~Lk~~~   44 (59)
T PF01166_consen   17 EVLKEQIAELEERNSQLEEENNLLKQNA   44 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4667777777777778888887777655

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	92.7
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	85.6
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	84.99
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	83.34
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	83.28
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	82.88

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=92.70  E-value=1.3  Score=29.12  Aligned_cols=46  Identities=20%  Similarity=0.348  Sum_probs=38.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821           27 LTVKELKQLENRLERGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRS   77 (136)
Q Consensus        27 Ls~~EL~~LE~qLe~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~   77 (136)
                      +|++=|.+||..+..++..|     .++..+|+.|+.|-..|.+++..++.
T Consensus         3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e~~~   48 (81)
T 2jee_A            3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQH   48 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            78999999999999999988     67777888888887777776666444

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=85.60  E-value=3.5  Score=25.55  Aligned_cols=35  Identities=23%  Similarity=0.230  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821           41 RGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV   79 (136)
Q Consensus        41 ~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l   79 (136)
                      .|..+.|.||.+.+    ..|..++..|..+|..|...+
T Consensus        19 eAArrsR~RK~~~~----~~Le~~v~~L~~eN~~L~~ev   53 (63)
T 2dgc_A           19 EAARRSRARKLQRM----KQLEDKVEELLSKNYHLENEV   53 (63)
T ss_dssp             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            36678888888776    889999999999999999888

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=84.99  E-value=3.8  Score=25.15  Aligned_cols=34  Identities=24%  Similarity=0.448  Sum_probs=29.5

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821           42 GITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV   79 (136)
Q Consensus        42 ~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l   79 (136)
                      |..+-|.||.+.+    ..|..++..|..+|..|...+
T Consensus        13 AA~rcR~rKk~~~----~~Le~~v~~L~~~n~~L~~ei   46 (63)
T 2wt7_A           13 AAAKCRNRRRELT----DTLQAETDQLEDEKSALQTEI   46 (63)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            5667788888776    899999999999999999998

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=83.34  E-value=4.8  Score=24.19  Aligned_cols=34  Identities=29%  Similarity=0.284  Sum_probs=28.1

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821           42 GITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV   79 (136)
Q Consensus        42 ~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l   79 (136)
                      |-.+-|.||...+    +.|..++..|..+|..|...+
T Consensus        12 sA~rSR~RKk~~~----~~LE~~v~~L~~eN~~L~~~~   45 (55)
T 1dh3_A           12 AARESRRKKKEYV----KSLENRVAVLENQNKTLIEEL   45 (55)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            4456677777654    889999999999999999998

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=83.28  E-value=5.1  Score=24.29  Aligned_cols=34  Identities=26%  Similarity=0.269  Sum_probs=28.9

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821           42 GITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV   79 (136)
Q Consensus        42 ~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l   79 (136)
                      |..+.|.||.+.+    ..|..++..|..+|..|...+
T Consensus        12 AA~k~R~rKk~~~----~~Le~~~~~L~~~n~~L~~~i   45 (61)
T 1t2k_D           12 AASRSRQKRKVWV----QSLEKKAEDLSSLNGQLQSEV   45 (61)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            5667788888765    889999999999999999888

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=82.88  E-value=5.4  Score=24.31  Aligned_cols=35  Identities=20%  Similarity=0.145  Sum_probs=30.5

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038821           41 RGITRFRFKKHEMPLAEIEFLQKREIELENESVCLRSKV   79 (136)
Q Consensus        41 ~~L~~IR~rK~~ll~~qi~~l~kKe~~L~eeN~~L~~~l   79 (136)
                      .|..+-|.||.+.+    ..|..++..|..+|..|...+
T Consensus        11 ~AA~k~R~rKk~~~----~~Le~~v~~L~~~n~~L~~~v   45 (62)
T 1jnm_A           11 IAASKSRKRKLERI----ARLEEKVKTLKAQNSELASTA   45 (62)
T ss_dssp             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            36678888888776    899999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00