Citrus Sinensis ID: 038852
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 851 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SY69 | 913 | Pentatricopeptide repeat- | yes | no | 0.895 | 0.834 | 0.525 | 0.0 | |
| Q9M3A8 | 629 | Pentatricopeptide repeat- | no | no | 0.599 | 0.810 | 0.366 | 4e-78 | |
| Q9LEX5 | 412 | Pentatricopeptide repeat- | no | no | 0.439 | 0.907 | 0.383 | 1e-62 | |
| Q9LEX6 | 403 | Pentatricopeptide repeat- | no | no | 0.410 | 0.866 | 0.365 | 1e-59 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.547 | 0.779 | 0.234 | 1e-36 | |
| Q9SS81 | 687 | Pentatricopeptide repeat- | no | no | 0.482 | 0.598 | 0.245 | 8e-34 | |
| Q0WPZ6 | 874 | Pentatricopeptide repeat- | no | no | 0.491 | 0.478 | 0.254 | 1e-32 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.491 | 0.554 | 0.234 | 1e-32 | |
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.518 | 0.732 | 0.238 | 7e-32 | |
| Q9ASZ8 | 621 | Pentatricopeptide repeat- | no | no | 0.432 | 0.592 | 0.237 | 9e-32 |
| >sp|Q9SY69|PPR29_ARATH Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana GN=GRP23 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/845 (52%), Positives = 537/845 (63%), Gaps = 83/845 (9%)
Query: 18 LSFSLLHQ-FHNLALNPNSPNP--------------NLNPI------------------- 43
LS S LHQ HN++L+P + +P NLNPI
Sbjct: 21 LSISFLHQRIHNISLSPANEDPETTTGNNQDSEKYPNLNPIPNDPSQFQIPQNHTPPIPY 80
Query: 44 ---SARGYAFSSAEEAAAERRRRKRRLRIEPPLHAIRPNPTQPPP-RDPNAPRLPDTTSA 99
R AFSSAEEAAAERRRRKRRLRIEPPLHA+R +P+ PPP RDPNAPRLPD+TSA
Sbjct: 81 PPIPHRTMAFSSAEEAAAERRRRKRRLRIEPPLHALRRDPSAPPPKRDPNAPRLPDSTSA 140
Query: 100 LVGPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAV 159
LVG RLNLHNRVQSLIRA DLDAAS LARQ+VFS RPTVFTCNAIIAAMYRAKRY +++
Sbjct: 141 LVGQRLNLHNRVQSLIRASDLDAASKLARQSVFSNTRPTVFTCNAIIAAMYRAKRYSESI 200
Query: 160 ALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTK 219
+LF+YFF Q++IVPN+VSYN +IN +CDEG VDE + V+R I+ AP PSS TYRHLTK
Sbjct: 201 SLFQYFFKQSNIVPNVVSYNQIINAHCDEGNVDEALEVYRHILANAPFAPSSVTYRHLTK 260
Query: 220 GFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVY 279
G V AGRIG+A LLR+MLS+ ADS VYNNLI G+L+LG+ +KA E FDELK +C VY
Sbjct: 261 GLVQAGRIGDAASLLREMLSKGQAADSTVYNNLIRGYLDLGDFDKAVEFFDELKSKCTVY 320
Query: 280 DGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALF 339
DG+VNATFME+WF +G DKEAM+SY+SL+++ FRM P T N LLEV LK KK+EA ALF
Sbjct: 321 DGIVNATFMEYWFEKGNDKEAMESYRSLLDKKFRMHPPTGNVLLEVFLKFGKKDEAWALF 380
Query: 340 EQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYN 399
+MLDNH PPNI +VNSDT IMVNECFK G+FSEAI TFKK G+ SKPF MD GY
Sbjct: 381 NEMLDNHAPPNILSVNSDTVGIMVNECFKMGEFSEAINTFKKVGSKVTSKPFVMDYLGYC 440
Query: 400 NIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVES 459
NI+ R+CE ML EAE+ E ++SL D + R +IDAYLK ERIDDA+++ +RMV+
Sbjct: 441 NIVTRFCEQGMLTEAERFFAEGVSRSLPADAPSHRAMIDAYLKAERIDDAVKMLDRMVDV 500
Query: 460 GLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMS 519
LRVV FG +VF ELI GK+ E A +LTKMGE++PKPD IYDVVVRGLC+ D +
Sbjct: 501 NLRVVADFGARVFGELIKNGKLTESAEVLTKMGEREPKPDPSIYDVVVRGLCDGDALDQA 560
Query: 520 KDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPVPPPRTSG--P 577
KDIV +M+++ VG+T L++F+ E F KAGR EEIE++LN+ A PV SG P
Sbjct: 561 KDIVGEMIRHNVGVTTVLREFIIEVFEKAGRREEIEKILNS----VARPVRNAGQSGNTP 616
Query: 578 PQMTGQQYSGYNRMAREQQFGSNQMAGQQ--SLGPNQMEGQQHFGSYQRMGQQSFGPNQM 635
P++ FG+ A QQ P +G H S G + Q
Sbjct: 617 PRVPA-------------VFGTTPAAPQQPRDRAPWTSQGVVHSNS----GWANGTAGQT 659
Query: 636 AGQQHFTSNQMMGQQ-SFRPTQMSGYQQFGSNQMMGQQSFGPNKMAGEQPFSPFQRMGQQ 694
AG + +N GQ S+ T + QQ SNQ GQQ P + + P Q+ Q
Sbjct: 660 AGGAYKANN---GQNPSWSNTSDNQQQQSWSNQTAGQQ---PPSWSRQAPGYQQQQSWSQ 713
Query: 695 SSGPSQMSGQQSSGPSQMSGQQSSGPAQMLGQQSLGPNQMERQQPQGSYQKWGQQAFGSN 754
SG S SG Q S +Q +GQQ Q GQQ NQ QQ Q + Q GQQ +N
Sbjct: 714 QSGWSSPSGHQQSWTNQTAGQQQPWANQTPGQQQQWANQTPGQQQQLANQTPGQQQQWAN 773
Query: 755 QM-GGQQPSGYNRMGEQQHFGWQQMSGHQPNKIAQWTGQPPSAPSQTAGQQQSWQPQTSA 813
Q G QQ G QQ + Q +GHQ W Q PS QQQ W QT+
Sbjct: 774 QTPGQQQQWANQNNGHQQPWA-NQNTGHQ----QSWANQTPS-------QQQPWANQTTG 821
Query: 814 QQQSW 818
QQQ W
Sbjct: 822 QQQGW 826
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May function as a transcriptional regulator essential for early embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M3A8|PP273_ARATH Pentatricopeptide repeat-containing protein At3g49240 OS=Arabidopsis thaliana GN=EMB1796 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (750), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 193/526 (36%), Positives = 299/526 (56%), Gaps = 16/526 (3%)
Query: 43 ISARGYAFSSAEEAAAERRRRKRRLRIEPPLHAIRPNPTQP-----PPRDPNAPRLPDTT 97
++ R +F++ EEAAAERRRRKRRLR+EPP+++ + Q P ++PN P+LP++
Sbjct: 29 LAVRYMSFATQEEAAAERRRRKRRLRMEPPVNSFNRSQQQQSQIPRPIQNPNIPKLPESV 88
Query: 98 SALVGPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDD 157
SALVG RL+LHN + LIR DL+ A+ R +V+S RPT+FT N ++AA R +Y
Sbjct: 89 SALVGKRLDLHNHILKLIRENDLEEAALYTRHSVYSNCRPTIFTVNTVLAAQLRQAKY-G 147
Query: 158 AVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217
A+ F +QA I PNI++YN + Y D K + + ++ I+ AP+ PS T+R L
Sbjct: 148 ALLQLHGFINQAGIAPNIITYNLIFQAYLDVRKPEIALEHYKLFIDNAPLNPSIATFRIL 207
Query: 218 TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRC- 276
KG V + +A+++ DM + D +VY+ L+ G + + + +L+ ELK++
Sbjct: 208 VKGLVSNDNLEKAMEIKEDMAVKGFVVDPVVYSYLMMGCVKNSDADGVLKLYQELKEKLG 267
Query: 277 -LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN--FRMTPATCNTLLEVLLKHEKKE 333
V DGVV M+ +F + +KEAM+ Y+ + N RM+ N +LE L ++ K +
Sbjct: 268 GFVDDGVVYGQLMKGYFMKEMEKEAMECYEEAVGENSKVRMSAMAYNYVLEALSENGKFD 327
Query: 334 EAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAM 393
EA LF+ + H PP AVN TFN+MVN GKF EA+E F++ G K P
Sbjct: 328 EALKLFDAVKKEHNPPRHLAVNLGTFNVMVNGYCAGGKFEEAMEVFRQMGDF-KCSP--- 383
Query: 394 DVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELF 453
D +NN++ + C+NE+L EAEKL E+ K++ PD T+ L+D K +ID+ +
Sbjct: 384 DTLSFNNLMNQLCDNELLAEAEKLYGEMEEKNVKPDEYTYGLLMDTCFKEGKIDEGAAYY 443
Query: 454 NRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNE 513
MVES LR ++ ++ ++LI GK+ + M K K D Y ++R L
Sbjct: 444 KTMVESNLRPNLAVYNRLQDQLIKAGKLDDAKSFFDMMVSK-LKMDDEAYKFIMRALSEA 502
Query: 514 GLFDMSKDIVDQMMKYG-VGITPALQDFVRETFGKAGRGEEIERVL 558
G D IVD+M+ V ++ LQ+FV+E K GR ++E+++
Sbjct: 503 GRLDEMLKIVDEMLDDDTVRVSEELQEFVKEELRKGGREGDLEKLM 548
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May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LEX5|PP290_ARATH Pentatricopeptide repeat-containing protein At3g60980, mitochondrial OS=Arabidopsis thaliana GN=At3g60980 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 241 bits (616), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 158/412 (38%), Positives = 229/412 (55%), Gaps = 38/412 (9%)
Query: 77 RPNPTQPPPRDPNAPRLPDTTSALVGPRLNLHNRVQSLIRA-GDLDAASYLARQAVFSRI 135
R T P R + PD + +L RV LIR GDLD A+ AR AVF+ I
Sbjct: 11 RRFCTAVPRRSEDIMSNPDCRPS------DLCLRVSYLIRCVGDLDTAAKYARLAVFTSI 64
Query: 136 RP--TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDE 193
+ T C +II M R KR DA L+++FF+Q ++ PN +N +I + +G V++
Sbjct: 65 KSESTTTICQSIIGGMLRDKRLKDAYDLYEFFFNQHNLRPNSHCWNYIIESGFQQGLVND 124
Query: 194 GMNVFRRIIETAPVG--PSSNTYRHLTKGFVDAGRIGEAVDLLRD-MLSRQLGADSLVYN 250
++ R I + V PS +++R LTKG V +GR+ +A LR ++R D + YN
Sbjct: 125 ALHFHHRCINSGQVHDYPSDDSFRILTKGLVHSGRLDQAEAFLRGRTVNRTTYPDHVAYN 184
Query: 251 NLISGFLNLGNLEKANELFDELKQRCLV-------------YDGVVN---ATFMEWWFNQ 294
NLI GFL+LGN +KAN + E K+ L+ Y+ V ATFME+WF Q
Sbjct: 185 NLIRGFLDLGNFKKANLVLGEFKRLFLIALSETKDDLHHSNYENRVAFLMATFMEYWFKQ 244
Query: 295 GKDKEAMQSY-KSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQA 353
GK EAM+ Y + ++ + T N LL+VLLK+ +K+ A AL+ ++LD +
Sbjct: 245 GKQVEAMECYNRCVLSNRLLVCAETGNALLKVLLKYGEKKNAWALYHELLDKNGTGK-GC 303
Query: 354 VNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEE 413
++SDT IMV+ECF G FSEA+ET+KKA PK+ D II R+CEN ML E
Sbjct: 304 LDSDTIKIMVDECFDMGWFSEAMETYKKA--RPKN-----DYLSDKYIITRFCENRMLSE 356
Query: 414 AEKLLREISTKSLS-PDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVV 464
AE + + DV T++T+IDAY+K RI DA++ N+M+++ L+ V
Sbjct: 357 AESVFVDSLADDFGYIDVNTYKTMIDAYVKAGRIHDAIKTSNKMIDATLKEV 408
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LEX6|PP289_ARATH Pentatricopeptide repeat-containing protein At3g60960, mitochondrial OS=Arabidopsis thaliana GN=At3g60960 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 232 bits (591), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 146/400 (36%), Positives = 219/400 (54%), Gaps = 51/400 (12%)
Query: 83 PPPRDPNA-PRLPDTTSALVGPR-LNLHNRVQSLIRAGDLDAASYLARQAV---FSRIRP 137
P RDP++ P+L + + + R ++L RV+++I +LD AS L+R AV F R
Sbjct: 27 PLGRDPSSLPKLDPVSISYIDSRPISLRYRVRAMIEMSNLDEASKLSRLAVLNGFLVDRD 86
Query: 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNV 197
TVF CN++I AM AKRYDDA++LF YFF+++ +PN +S + +I +CD+G VD+ + +
Sbjct: 87 TVFICNSVIGAMCSAKRYDDAISLFNYFFNESQTLPNTLSCDLIIKAHCDQGHVDDALEL 146
Query: 198 FRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFL 257
+R I+ V P TY L K VDA R EA L R M +VY+ LI GFL
Sbjct: 147 YRHILLDGRVAPGIETYMILAKALVDAKRFDEACVLARSMSC----CSFMVYDILIRGFL 202
Query: 258 NLGNLEKANELFDELK--------QRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLME 309
++GN KA+++F+ELK + + + N +FM +WF QGKD+EAM+ +L +
Sbjct: 203 DIGNFVKASQIFEELKGLDSKLPGREYHKANAIFNVSFMNYWFKQGKDEEAMEILANLED 262
Query: 310 RNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH 369
+ P N +L+VL+KH KK EA LF +M I+ +S+T +IM
Sbjct: 263 AQV-LNPIVGNRVLQVLVKHGKKTEAWELFGEM--------IEICDSETVDIM------S 307
Query: 370 GKFSEAIETFKKAGTHPKSKPFA-MDVAGYNNIIARYCENEMLEEAEKLLREISTKS--- 425
FSE K+ PF + Y +I CE+ + +AEKL E+ T
Sbjct: 308 EYFSE------------KTVPFERLRKTCYRKMIVSLCEHGKVSDAEKLFAEMFTDVDGG 355
Query: 426 ---LSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLR 462
+ PD+ FR +I+ Y+ V R+DDA++ N+M S LR
Sbjct: 356 DLLVGPDLLIFRAMINGYVSVGRVDDAIKTLNKMRISNLR 395
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 115/491 (23%), Positives = 219/491 (44%), Gaps = 25/491 (5%)
Query: 108 HNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFD 167
+N ++ ++R G+L+ V+ P + C +I R + A + + +
Sbjct: 106 NNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILE-ILE 164
Query: 168 QADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRI 227
+ VP++++YN +I+ YC G+++ ++V R+ V P TY + + D+G++
Sbjct: 165 GSGAVPDVITYNVMISGYCKAGEINNALSVLDRM----SVSPDVVTYNTILRSLCDSGKL 220
Query: 228 GEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATF 287
+A+++L ML R D + Y LI + A +L DE++ R D V
Sbjct: 221 KQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVL 280
Query: 288 MEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQ 347
+ +G+ EA++ + + T N +L + + +A+ L ML
Sbjct: 281 VNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF 340
Query: 348 PPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA---GTHPKSKPFAMDVAGYNNIIAR 404
P++ TFNI++N + G AI+ +K G P S YN ++
Sbjct: 341 SPSVV-----TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNS-------LSYNPLLHG 388
Query: 405 YCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLR-V 463
+C+ + ++ A + L + ++ PD+ T+ T++ A K +++DA+E+ N++ G V
Sbjct: 389 FCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPV 448
Query: 464 VVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIV 523
++++ T V + L GK + +L +M KD KPD + Y +V GL EG D +
Sbjct: 449 LITYNT-VIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFF 507
Query: 524 DQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPVPPPRTSGPPQMTGQ 583
+ + +GI P F G + + +R ++ + P TS + G
Sbjct: 508 HEFER--MGIRPNAVTFNSIMLGLC-KSRQTDRAIDFLVFMINRGCKPNETSYTILIEGL 564
Query: 584 QYSGYNRMARE 594
Y G + A E
Sbjct: 565 AYEGMAKEALE 575
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (368), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 104/424 (24%), Positives = 206/424 (48%), Gaps = 13/424 (3%)
Query: 136 RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGM 195
+P VF+ + +I + +A + DDA+ LF ++ + P++ YN LI+ + E M
Sbjct: 181 KPDVFSYSTVINDLAKAGKLDDALELFDEMSERG-VAPDVTCYNILIDGFLKEKDHKTAM 239
Query: 196 NVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISG 255
++ R++E + V P+ T+ + G GR+ + + + M + D Y++LI G
Sbjct: 240 ELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHG 299
Query: 256 FLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMT 315
+ GN++KA +F+EL +R D V T + + GK KE+++ ++ +ME +
Sbjct: 300 LCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWR-IMEHKNSVN 358
Query: 316 PATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEA 375
+ N L++ LL++ K +EA ++ M P A + T+ I ++ +G ++A
Sbjct: 359 IVSYNILIKGLLENGKIDEATMIWRLM-----PAKGYAADKTTYGIFIHGLCVNGYVNKA 413
Query: 376 IETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRT 435
+ ++ +S +DV Y +II C+ + LEEA L++E+S + +
Sbjct: 414 LGVMQEV----ESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNA 469
Query: 436 LIDAYLKVERIDDALELFNRMVESGLR-VVVSFGTKVFNELITKGKVAECAPILTKMGEK 494
LI ++ R+ +A M ++G R VVS+ + L GK E + + +M E
Sbjct: 470 LIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICG-LCKAGKFGEASAFVKEMLEN 528
Query: 495 DPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEI 554
KPD Y +++ GLC + D++ ++ Q ++ G+ + + + G+ ++
Sbjct: 529 GWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDA 588
Query: 555 ERVL 558
V+
Sbjct: 589 MTVM 592
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 122/479 (25%), Positives = 209/479 (43%), Gaps = 61/479 (12%)
Query: 111 VQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQAD 170
+Q L+R G A + +Q I P++++ N ++ + + DA + +
Sbjct: 333 LQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVG-LMKRNG 391
Query: 171 IVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEA 230
+ P+ V+Y L++ YC GKVD ++ + ++ + P++ T L GRI EA
Sbjct: 392 VCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCL-PNAYTCNILLHSLWKMGRISEA 450
Query: 231 VDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEW 290
+LLR M + G D++ N ++ G G L+KA E+ ++ V+
Sbjct: 451 EELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMR----VHGSAALGNLGNS 506
Query: 291 WFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPN 350
+ D SL+E N T +TLL L K + EA+ LF +M+ P+
Sbjct: 507 YIGLVDD--------SLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPD 558
Query: 351 IQAVNSDTFNIMVNECFKHGKFSEAIETFK---KAGTHP--------------------- 386
S +NI ++ K GK S A K K G H
Sbjct: 559 -----SVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEI 613
Query: 387 -------KSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDA 439
K K + ++ YN I CE E +E+A LL E+ K+++P+V +F+ LI+A
Sbjct: 614 HGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEA 673
Query: 440 YLKVERIDDALELFNRMV-----ESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEK 494
+ KV D A E+F V + GL + +FNEL+ G++ + +L + ++
Sbjct: 674 FCKVPDFDMAQEVFETAVSICGQKEGLY------SLMFNELLAAGQLLKATELLEAVLDR 727
Query: 495 DPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEE 553
+ +Y +V LC + +++ I+ +M+ G G PA V + GK G +E
Sbjct: 728 GFELGTFLYKDLVESLCKKDELEVASGILHKMIDRGYGFDPAALMPVIDGLGKMGNKKE 786
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/474 (23%), Positives = 211/474 (44%), Gaps = 56/474 (11%)
Query: 103 PRLNLHNRVQSLIRAGD---LDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAV 159
P + +NR+ +L+ G+ L S+ A+ +V+ I+P V T N +I A+ RA + A+
Sbjct: 152 PDTHFYNRMLNLLVDGNSLKLVEISH-AKMSVWG-IKPDVSTFNVLIKALCRAHQLRPAI 209
Query: 160 ALFKY-------------------FFDQADIVPNI---------------VSYNNLINTY 185
+ + + ++ D+ + VS N +++ +
Sbjct: 210 LMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGF 269
Query: 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGAD 245
C EG+V++ +N + + P T+ L G AG + A++++ ML D
Sbjct: 270 CKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPD 329
Query: 246 SLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYK 305
YN++ISG LG +++A E+ D++ R + V T + + + +EA + +
Sbjct: 330 VYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELAR 389
Query: 306 SLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNE 365
L + T N+L++ L A LFE+M P + T+N++++
Sbjct: 390 VLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEP-----DEFTYNMLIDS 444
Query: 366 CFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKS 425
GK EA+ K+ + A V YN +I +C+ EAE++ E+
Sbjct: 445 LCSKGKLDEALNMLKQM----ELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHG 500
Query: 426 LSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITK----GKV 481
+S + T+ TLID K R++DA +L ++M+ G + +N L+T G +
Sbjct: 501 VSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKP----DKYTYNSLLTHFCRGGDI 556
Query: 482 AECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITP 535
+ A I+ M +PD + Y ++ GLC G +++ ++ + G+ +TP
Sbjct: 557 KKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTP 610
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (351), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 110/461 (23%), Positives = 207/461 (44%), Gaps = 20/461 (4%)
Query: 121 DAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNN 180
D A L ++ + SR P++ + +A+ R K+++ + K + I NI + N
Sbjct: 70 DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQL-ELNGIAHNIYTLNI 128
Query: 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR 240
+IN +C K +V ++++ P + T+ L KG G++ EAV L+ M+
Sbjct: 129 MINCFCRCCKTCFAYSVLGKVMKLGY-EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN 187
Query: 241 QLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEA 300
D + YN++++G G+ A +L ++++R + D +T ++ G A
Sbjct: 188 GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 247
Query: 301 MQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFN 360
+ +K + + + + T N+L+ L K K + L + M+ PN+ TFN
Sbjct: 248 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVI-----TFN 302
Query: 361 IMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLRE 420
++++ K GK EA E +K+ T S ++ YN ++ YC L EA +L
Sbjct: 303 VLLDVFVKEGKLQEANELYKEMITRGISP----NIITYNTLMDGYCMQNRLSEANNMLDL 358
Query: 421 ISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGK 480
+ SPD+ TF +LI Y V+R+DD +++F + + GL + + GK
Sbjct: 359 MVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGK 418
Query: 481 VAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDF 540
+ + +M PD + Y +++ GLC+ G + + +I + + K + + +
Sbjct: 419 IKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTT 478
Query: 541 VRETFGKAGRGEEIERVLNADRWGYAAPVPPPRTSGPPQMT 581
+ E K G+ E D W + P + P MT
Sbjct: 479 IIEGMCKGGKVE--------DAWNLFCSL-PCKGVKPNVMT 510
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (350), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 90/379 (23%), Positives = 179/379 (47%), Gaps = 11/379 (2%)
Query: 136 RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGM 195
+PT+ T NA++ + + DAV L + PN V+Y ++ C G+ M
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETG-FQPNEVTYGPVLKVMCKSGQTALAM 232
Query: 196 NVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISG 255
+ R++ E + + Y + G G + A +L +M + AD ++Y LI G
Sbjct: 233 ELLRKM-EERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRG 291
Query: 256 FLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMT 315
F G + +L ++ +R + D V + ++ + +GK +EA + +K +++R
Sbjct: 292 FCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPD 351
Query: 316 PATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEA 375
T +L++ K + ++A + + M+ PNI+ TFNI++N K +
Sbjct: 352 TVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIR-----TFNILINGYCKANLIDDG 406
Query: 376 IETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRT 435
+E F+K + D YN +I +CE LE A++L +E+ ++ + PD+ +++
Sbjct: 407 LELFRKMSL----RGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKI 462
Query: 436 LIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKD 495
L+D + ALE+F ++ +S + + + + + + KV + + + K
Sbjct: 463 LLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 522
Query: 496 PKPDFLIYDVVVRGLCNEG 514
KPD Y++++ GLC +G
Sbjct: 523 VKPDVKTYNIMIGGLCKKG 541
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 851 | ||||||
| 449460722 | 871 | PREDICTED: pentatricopeptide repeat-cont | 0.849 | 0.830 | 0.610 | 0.0 | |
| 46095227 | 896 | ACT11D09.4 [Cucumis melo] | 0.841 | 0.799 | 0.597 | 0.0 | |
| 225465247 | 627 | PREDICTED: pentatricopeptide repeat-cont | 0.696 | 0.945 | 0.656 | 0.0 | |
| 147772351 | 627 | hypothetical protein VITISV_020169 [Viti | 0.640 | 0.869 | 0.702 | 0.0 | |
| 224129468 | 689 | predicted protein [Populus trichocarpa] | 0.722 | 0.892 | 0.644 | 0.0 | |
| 224120050 | 832 | predicted protein [Populus trichocarpa] | 0.878 | 0.899 | 0.549 | 0.0 | |
| 297739467 | 616 | unnamed protein product [Vitis vinifera] | 0.632 | 0.873 | 0.690 | 0.0 | |
| 255570274 | 710 | pentatricopeptide repeat-containing prot | 0.799 | 0.957 | 0.590 | 0.0 | |
| 356541846 | 782 | PREDICTED: pentatricopeptide repeat-cont | 0.874 | 0.951 | 0.533 | 0.0 | |
| 357520879 | 918 | Pentatricopeptide repeat-containing prot | 0.902 | 0.836 | 0.539 | 0.0 |
| >gi|449460722|ref|XP_004148094.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10270-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 839 bits (2168), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/747 (61%), Positives = 547/747 (73%), Gaps = 24/747 (3%)
Query: 24 HQFHNLALNPNSPNPNLNPISARGYAFSSAEEAAAERRRRKRRLRIEPPLHAIRPNPTQP 83
++F +L +S +P+L + AR ++FSSAEEAAAERRRRKRRLRIEPPLHA+R + P
Sbjct: 4 YRFLLRSLRRSSTSPSL--LLARSFSFSSAEEAAAERRRRKRRLRIEPPLHALRRDNYPP 61
Query: 84 PPRDPNAPRLPDTTSALVGPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCN 143
P RDPNAPRLPD+TSALVGPRLNLHNRVQSLIRAGDLDAAS +AR +VFS RPTVFTCN
Sbjct: 62 PQRDPNAPRLPDSTSALVGPRLNLHNRVQSLIRAGDLDAASSVARHSVFSNTRPTVFTCN 121
Query: 144 AIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIE 203
AIIAAMYRAKRY DA+ALF++FF+Q++IVPN+VSYNNLIN +CDEG+VD G+ V+R II
Sbjct: 122 AIIAAMYRAKRYSDAIALFQFFFNQSNIVPNVVSYNNLINAHCDEGRVDVGLEVYRHIIA 181
Query: 204 TAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLE 263
AP PS+ TYRHLTKG +DAGRI EAVDLLR+ML++ GADSLV+NNLISGFLNLGNLE
Sbjct: 182 NAPFSPSAVTYRHLTKGLIDAGRIEEAVDLLREMLNKGHGADSLVFNNLISGFLNLGNLE 241
Query: 264 KANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLL 323
KANELFDELK+RCLVYDGVVNATFM+W+FNQGK+KEAM+SYKSL++R F+M PATCN LL
Sbjct: 242 KANELFDELKERCLVYDGVVNATFMDWFFNQGKEKEAMESYKSLLDRQFKMVPATCNVLL 301
Query: 324 EVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAG 383
EVLLKHEKK EA LF+QMLDNH PPN QAVNSDTFNIMVNECFKHGKF+EA+ETF+K G
Sbjct: 302 EVLLKHEKKTEAWTLFDQMLDNHTPPNFQAVNSDTFNIMVNECFKHGKFAEAVETFRKVG 361
Query: 384 THPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKV 443
T PKS+PFAMDVAGYNNIIAR+CE M+ +AE E+ +KSLSPDV T RTLI++YLK+
Sbjct: 362 TQPKSRPFAMDVAGYNNIIARFCEQGMMADAETFFAELCSKSLSPDVPTHRTLIESYLKI 421
Query: 444 ERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIY 503
E+IDDAL +FNRMV+ GLRVV SFG VF ELI GK A+CA ILTKMGE+DPKPD Y
Sbjct: 422 EQIDDALRVFNRMVDVGLRVVASFGNMVFGELIKNGKAADCAQILTKMGERDPKPDPTCY 481
Query: 504 DVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRW 563
DVV+RGLCNEG D S++++DQ+M+YG+G+TP L++FV+E F KAGR EEIER+LN ++W
Sbjct: 482 DVVIRGLCNEGALDASRELLDQIMRYGIGLTPTLEEFVKEAFVKAGRHEEIERLLNMNKW 541
Query: 564 GYAAPVP---PPRTSG---PPQMTGQQYSGYNRMAREQQFGSNQMAGQQSLGPNQMEGQQ 617
G+AA P PPR S PPQM G G +MA S + + QM
Sbjct: 542 GHAAYRPLSGPPRISQSQVPPQMGG-PLQGPPQMAEPNWRPSINPQARGTYSSPQMSSPS 600
Query: 618 HF--GSYQRMGQQSF--GPNQMAGQQH--FTSNQMMGQQSFRPTQMSGYQQFGSNQMMGQ 671
HF GS Q G F G QM QH F M S +P QM+ S +
Sbjct: 601 HFQSGSPQTTGSNYFQSGSVQMTKSQHSSFNPPPMEEHHSQQPPQMTEANWRPSINPQAR 660
Query: 672 QSFGPNKMAGEQPFSPFQRMGQQSSGPSQMSGQQSSGPSQMSGQQSSG--PAQMLGQQSL 729
S+ +M+ S FQ Q++G S SG +QM+ Q S P M S
Sbjct: 661 GSYSSPQMSNP---SHFQSGSPQTTG----SNYFQSGSAQMTKPQHSSFDPPPMEEHHSR 713
Query: 730 GPNQMERQQPQGSYQKWGQQAFGSNQM 756
P+QM + S + ++ S QM
Sbjct: 714 QPSQMAEPSWRPSINPQARGSYSSPQM 740
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|46095227|gb|AAS80150.1| ACT11D09.4 [Cucumis melo] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/771 (59%), Positives = 554/771 (71%), Gaps = 55/771 (7%)
Query: 3 LLRLLLRSSNRHHHRLSFSLLHQF-HNLALNPNSPNPNLNPISARGYAFSSAEEAAAERR 61
LLR L RSS + + + + H++ + + +P ++ + AR ++FSSAEEAAAERR
Sbjct: 7 LLRSLRRSSTSPSYAPALTTIAPLNHHIPPSSQTSSP-ISLLLARSFSFSSAEEAAAERR 65
Query: 62 RRKRRLRIEPPLHAIRPNPTQPPPRDPNAPRLPDTTSALVGPRLNLHNRVQSLIRAGDLD 121
RRKRRLRIEPPLHA+R + PP RDPNAPRLPD+TSALVGPRLNLHNRVQSLIRAGDLD
Sbjct: 66 RRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLNLHNRVQSLIRAGDLD 125
Query: 122 AASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNL 181
AAS +AR +VFS RPTVFTCNAIIAAMYRAKRY DA+ALF++FF+Q++IVPN+VSYNNL
Sbjct: 126 AASSVARHSVFSNTRPTVFTCNAIIAAMYRAKRYSDAIALFQFFFNQSNIVPNVVSYNNL 185
Query: 182 INTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ 241
IN +CDEG+VD G+ V+R II AP PS+ TYRHLTKG +DAGRI EAVDLLR+ML++
Sbjct: 186 INAHCDEGRVDVGLEVYRHIIANAPFSPSAVTYRHLTKGLIDAGRIEEAVDLLREMLNKG 245
Query: 242 LGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAM 301
GADSLV+NNLISGFLNLGNL KANELFDELK+RCLVYDGVVNATFM+W+FNQGK+KEAM
Sbjct: 246 HGADSLVFNNLISGFLNLGNLVKANELFDELKERCLVYDGVVNATFMDWFFNQGKEKEAM 305
Query: 302 QSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNI 361
+SYKSL++R F+M PATCN LLEVLLKHEKK EA LF+QMLDNH PPN QAVNSDTFNI
Sbjct: 306 ESYKSLLDRQFKMVPATCNVLLEVLLKHEKKTEAWTLFDQMLDNHTPPNFQAVNSDTFNI 365
Query: 362 MVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREI 421
MVNECFK GKF+EA+ETF+K GT PKS+PFAMDVAGYNNIIAR+CE M+ +AE E+
Sbjct: 366 MVNECFKLGKFTEAVETFRKVGTQPKSRPFAMDVAGYNNIIARFCEQGMMADAETFFAEL 425
Query: 422 STKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKV 481
+KSLSPDV T RTLI++YLK+E+IDDAL +FNRMV+ GLRVV SFG VF ELI GK
Sbjct: 426 CSKSLSPDVPTHRTLIESYLKIEQIDDALRVFNRMVDVGLRVVASFGNMVFGELIKNGKA 485
Query: 482 AECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFV 541
A+CA ILTKMGE+DPKPD YDVV+RGLCNEG D S++++DQ+M+YG+G+TP L++FV
Sbjct: 486 ADCAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDTSRELLDQIMRYGIGLTPTLEEFV 545
Query: 542 RETFGKAGRGEEIERVLNADRWGYAAPVPPPRTSGPPQMTGQQYSGYNRMAREQQFGSNQ 601
++ F KAGR EEIER+LN ++WG+AA PP SGPP+++ Q +M R Q
Sbjct: 546 KDAFVKAGRHEEIERLLNMNKWGHAAYRPP---SGPPRISQSQVPP--QMGRPLQ----- 595
Query: 602 MAGQQSLGPNQMEGQQHFGSYQRMGQQSFGPNQMAGQQHFTSNQMMGQQSFRPTQMSG-- 659
GP QM S + S+ QM+ HF S P QM+G
Sbjct: 596 -------GPPQMAEPNWRPSINPQARGSYSSPQMSSPSHFQSG---------PPQMTGSN 639
Query: 660 YQQFGSNQMMGQQ--SFGPNKMAGEQPFSPFQRMGQQSSGPS------------QMSGQQ 705
Y Q GS QM Q SF P M P Q M + + PS QMS
Sbjct: 640 YFQSGSAQMTKPQHSSFDPPPMEEHHSQQPPQ-MAEPNWQPSINPQARGSYSSPQMSSHS 698
Query: 706 S--SGPSQMSGQQ--SSGPAQMLGQQ--SLGPNQME----RQQPQGSYQKW 746
SGP Q +G SG AQM Q S P +ME +Q PQ + W
Sbjct: 699 HFQSGPPQTTGSNYFQSGSAQMTKPQHSSFDPPRMEEHHSQQPPQMAEPNW 749
|
Source: Cucumis melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225465247|ref|XP_002267973.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10270-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/623 (65%), Positives = 486/623 (78%), Gaps = 30/623 (4%)
Query: 21 SLLHQFHNLALNPNSPNPNLNPISARGYAFSSAEEAAAERRRRKRRLRIEPPLHAIRPNP 80
+L+HQ P P L PI R +AFSSAEEAAAERRRRKRRLRIEPPLHA+R +P
Sbjct: 27 TLIHQ---------QPQPTLVPI--RTFAFSSAEEAAAERRRRKRRLRIEPPLHALRRDP 75
Query: 81 TQPPPR-DPNAPRLPDTTSALVGPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTV 139
+ P PR DPNAPRLPD+TSALVGPRLNLHNRVQSLIRAGDLD AS ARQ+VFS RPTV
Sbjct: 76 SAPRPRPDPNAPRLPDSTSALVGPRLNLHNRVQSLIRAGDLDLASATARQSVFSNTRPTV 135
Query: 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFR 199
FTCNAIIAAMYR KR+DDA+ALF++FF+Q++IVPNIVSYN LINT+CD G+VD G++++R
Sbjct: 136 FTCNAIIAAMYRNKRFDDAIALFQFFFNQSNIVPNIVSYNVLINTHCDAGRVDVGLDIYR 195
Query: 200 RIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259
I+ AP PS TYRHLTKG +D+GRIGEAVDLLR+ML++ GADSLVYNNLISGFLNL
Sbjct: 196 HILANAPFSPSPVTYRHLTKGLIDSGRIGEAVDLLREMLNKGHGADSLVYNNLISGFLNL 255
Query: 260 GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATC 319
N KA ELFDELK+RCLVYDGVVN TFM+W+F +G++K AM SYKSL++R FRMTP TC
Sbjct: 256 ENEAKAIELFDELKERCLVYDGVVNGTFMDWYFTKGREKCAMDSYKSLLDRQFRMTPVTC 315
Query: 320 NTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETF 379
N LLEVLLKH+KK EA ALF+QMLDNH PPN QAVNSD+F++MVNEC K GKF+EAIE F
Sbjct: 316 NALLEVLLKHDKKAEAWALFDQMLDNHTPPNFQAVNSDSFSVMVNECVKLGKFTEAIEVF 375
Query: 380 KKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDA 439
KK G SKPFAMDVAGYNNIIAR+CEN +L EAE+L E+STKSL+PDV +RT I+A
Sbjct: 376 KKVGKKQGSKPFAMDVAGYNNIIARFCENGLLSEAEQLFGELSTKSLTPDVNIYRTFIEA 435
Query: 440 YLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPD 499
Y +ER DDAL++FNR V+SGLRV+VSF KVF+EL+ KGK EC P+LTKMGEKDPKPD
Sbjct: 436 YFGMERADDALQMFNRFVDSGLRVIVSFANKVFDELVNKGKAGECVPVLTKMGEKDPKPD 495
Query: 500 FLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLN 559
Y++V++GLC E LFD S+D++ QM++Y +G+TP+L++FV E FGK GR EEIER+L
Sbjct: 496 PTTYEIVIKGLCKERLFDASRDLMGQMVRYNIGVTPSLREFVVEAFGKEGRSEEIERLLE 555
Query: 560 ADRWGYAA---PVPPPRTSGPPQMTGQQYSGYNRMAREQQFGSNQMAGQQSL-GPNQMEG 615
A+R G+ A P PPR +GPP+M G RMA G QMA + GP QM
Sbjct: 556 ANRPGFGAYWPPSGPPRMAGPPRMAGPP-----RMA-----GPPQMAEPPRMAGPPQMAE 605
Query: 616 QQHFGSYQRMGQQSFGPNQMAGQ 638
RM + P QMAGQ
Sbjct: 606 PPRMAESSRMEE----PPQMAGQ 624
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147772351|emb|CAN60262.1| hypothetical protein VITISV_020169 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/551 (70%), Positives = 460/551 (83%), Gaps = 6/551 (1%)
Query: 36 PNPNLNPISARGYAFSSAEEAAAERRRRKRRLRIEPPLHAIRPNPTQPPPR-DPNAPRLP 94
P P L PI R +AFSSAEEAAAERRRRKRRLRIEPPLHA+R +P+ P PR DPNAPRLP
Sbjct: 33 PQPTLVPI--RTFAFSSAEEAAAERRRRKRRLRIEPPLHALRRDPSAPRPRPDPNAPRLP 90
Query: 95 DTTSALVGPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKR 154
D+TSALVGPRLNLHNRVQSLIRAGDLD AS ARQ+VFS RPTVFTCNAIIAAMYR KR
Sbjct: 91 DSTSALVGPRLNLHNRVQSLIRAGDLDLASATARQSVFSNTRPTVFTCNAIIAAMYRNKR 150
Query: 155 YDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTY 214
+DDA+ALF++FF+Q++IVPNIVSYN LINT+CD G+VD G++++R I+ AP PS TY
Sbjct: 151 FDDAIALFQFFFNQSNIVPNIVSYNVLINTHCDAGRVDVGLDIYRHILANAPFSPSPVTY 210
Query: 215 RHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQ 274
RHLTKG +D+GRIGEAVDLLR+ML++ GADSLVYNNLISGFLNL N KA ELFDELK+
Sbjct: 211 RHLTKGLIDSGRIGEAVDLLREMLNKGHGADSLVYNNLISGFLNLENEAKAIELFDELKE 270
Query: 275 RCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEE 334
RCLVYDGVVN TFM+W+F +G++K AM SYKSL++R FRMTP TCN LLEVLLKH+KK E
Sbjct: 271 RCLVYDGVVNGTFMDWYFTKGREKCAMDSYKSLLDRQFRMTPVTCNALLEVLLKHDKKAE 330
Query: 335 AQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMD 394
A ALF+QMLDNH PPN QAVNSD+F++MVNEC K GKF+EAIE FKK G SKPFAMD
Sbjct: 331 AWALFDQMLDNHTPPNFQAVNSDSFSVMVNECVKLGKFTEAIEVFKKVGKKQGSKPFAMD 390
Query: 395 VAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFN 454
VAGYNNIIAR+CEN +L EAE+L E+STKSL+PDV +RT I+AY +ER DDAL++FN
Sbjct: 391 VAGYNNIIARFCENGLLSEAEQLFGELSTKSLTPDVNIYRTFIEAYFGMERADDALQMFN 450
Query: 455 RMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEG 514
R V+SGLRV+VSF KVF+EL+ KGK EC P+LTKMGEKDPKPD Y++V++GLC E
Sbjct: 451 RFVDSGLRVIVSFANKVFDELVNKGKAGECVPVLTKMGEKDPKPDPTTYEIVIKGLCKER 510
Query: 515 LFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAA---PVPP 571
LFD S+D++ QM++Y +G+TP+L++FV E FGK GR EEIER+L A+R G+ A P P
Sbjct: 511 LFDASRDLMGQMVRYNIGVTPSLREFVVEAFGKEGRSEEIERLLEANRPGFGAYWPPSGP 570
Query: 572 PRTSGPPQMTG 582
PR +GPP+M G
Sbjct: 571 PRMAGPPRMAG 581
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129468|ref|XP_002328724.1| predicted protein [Populus trichocarpa] gi|222839022|gb|EEE77373.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/641 (64%), Positives = 486/641 (75%), Gaps = 26/641 (4%)
Query: 22 LLHQFHNLALNP--NSPNPN----LNPI--SARGYAFSSAEEAAAERRRRKRRLRIEPPL 73
LL H+L L+P + PNPN P+ S+R ++FSSAEEAAAERRRR+RRLRIEPPL
Sbjct: 22 LLRALHHLILSPLHHIPNPNPPISTTPLLPSSRTFSFSSAEEAAAERRRRRRRLRIEPPL 81
Query: 74 HAIRPNPTQPPPRDPNAPRLPDTTSALVGPRLNLHNRVQSLIRAGDLDAASYLARQAVFS 133
A++ PPPRDPNAPRLPD+TSAL G RLNLHNRVQSLIRA DLD AS++AR +V+S
Sbjct: 82 QAMQ-RNPNPPPRDPNAPRLPDSTSALTGNRLNLHNRVQSLIRAFDLDTASHVARNSVYS 140
Query: 134 RIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDE 193
R RPTVFTCNAIIAAMYRAKRYDDA+ALFK+FF+Q IVPN+VSYNNLIN +CDEG+VD
Sbjct: 141 RTRPTVFTCNAIIAAMYRAKRYDDAIALFKFFFEQHHIVPNVVSYNNLINAHCDEGRVDV 200
Query: 194 GMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253
G+ V+RRIIE AP PSS TYRHLTKG +DA R+ +AV LLR+ML + GADSLVYNN+I
Sbjct: 201 GLEVYRRIIEIAPFSPSSVTYRHLTKGLIDAERMEDAVALLREMLVKGHGADSLVYNNVI 260
Query: 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR 313
GFL LGNLEKA+E F+ELK+RCLVYDGV+NAT+M+WWF QGKDKEAM+SYKS +RNF+
Sbjct: 261 KGFLELGNLEKADEFFNELKERCLVYDGVINATYMDWWFKQGKDKEAMESYKSWQDRNFK 320
Query: 314 MTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFS 373
+ PATCNT+LEVL+K+ KKE A ALFE MLDNH PP Q VNSDTFN MVNECF+ G+F
Sbjct: 321 VVPATCNTILEVLVKYGKKEAAWALFEHMLDNHTPPTHQGVNSDTFNTMVNECFREGEFE 380
Query: 374 EAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTF 433
EAI TFKKAGT P SKPF MDVAGYNNIIAR+CEN M+++AE+ L +S K L+PDVTTF
Sbjct: 381 EAINTFKKAGTKPGSKPFQMDVAGYNNIIARFCENGMMKQAEEFLAALSAKCLTPDVTTF 440
Query: 434 RTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGE 493
RTLID YLK+E IDD L +FN+M ++GLRVV SFGT+VF ELI GK E A ILTKMG
Sbjct: 441 RTLIDTYLKMEEIDDVLRMFNKMADAGLRVVASFGTRVFGELIKNGKAVESAEILTKMGN 500
Query: 494 KDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEE 553
KDPKPD IYDVVVRGLCN G DM KDIVDQMMKYGVG+ P L+DFV E F AGRG E
Sbjct: 501 KDPKPDSSIYDVVVRGLCNAGALDMGKDIVDQMMKYGVGVPPVLKDFVLEVFENAGRGSE 560
Query: 554 IERVLNADRWGYAAPVPPPRTS---------------GPPQMTGQQYSGYNRMAREQQFG 598
++ VL+ +W + PR GP + G+ SG +++R Q FG
Sbjct: 561 VKSVLDQSKWINNSRPAYPRQPQSQHEPTQMASGWPLGPSPLMGKSISGEPQISRSQSFG 620
Query: 599 SNQMAGQQSLGPNQMEGQQHFGSYQRMGQQSFGPNQMAGQQ 639
+ M+ Q LG QM GQ GS+ R QQ G + M QQ
Sbjct: 621 VHPMSRQTQLGSPQMTGQLPLGSHNR--QQPSGFHNMDQQQ 659
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120050|ref|XP_002331124.1| predicted protein [Populus trichocarpa] gi|222872852|gb|EEF09983.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/833 (54%), Positives = 548/833 (65%), Gaps = 85/833 (10%)
Query: 22 LLHQFHNLALNPNSPNPNLNP-IS-------ARGYAFSSAEEAAAERRRRKRRLRIEPPL 73
L+ H+L+L+P PNL+P IS +R +AFSSAEEAAA+RR+R+RRLRI+PP
Sbjct: 23 LIRALHHLSLSPLVHTPNLSPPISTSPLLPPSRTFAFSSAEEAAADRRKRRRRLRIDPPF 82
Query: 74 HAIRPNPTQPPPRDPNAPRLPDTTSALVGPRLNLHNRVQSLIRAGDLDAASYLARQAVFS 133
A++ + PPP DPNAPRLPD+T+AL G RLNLHNRVQSLIRA DLD AS +AR +V+S
Sbjct: 83 QAMQ---SNPPPPDPNAPRLPDSTNALTGHRLNLHNRVQSLIRAYDLDTASLVARNSVYS 139
Query: 134 RIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDE 193
R RPTVFTCNAIIAAMYRAKRYDDAV+LFK+FF++ +IVPN+VSYNNLIN +CDEGKVD
Sbjct: 140 RTRPTVFTCNAIIAAMYRAKRYDDAVSLFKFFFEKHNIVPNVVSYNNLINAHCDEGKVDL 199
Query: 194 GMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253
G+ ++RRIIETA PSS TYRHLTKG +DAGRI +AV LLR+ML++ GADSLVYNN+I
Sbjct: 200 GLEIYRRIIETALFSPSSVTYRHLTKGLIDAGRIEDAVALLREMLAKGHGADSLVYNNVI 259
Query: 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR 313
GFL LGNLEKANE FDELK+RCLVYDGV+NATFM+WWF QGKDKEAM SYKS ++NF+
Sbjct: 260 KGFLELGNLEKANEFFDELKERCLVYDGVINATFMDWWFKQGKDKEAMGSYKSWQDKNFK 319
Query: 314 MTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFS 373
+ PATCNT+LEVL+++ KKE A ALFE MLDNH PP QAVNSDTFNIMVNECFK F
Sbjct: 320 VVPATCNTILEVLVRYGKKEAACALFEHMLDNHTPPTQQAVNSDTFNIMVNECFKEAGFE 379
Query: 374 EAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTF 433
EAI TFKKAGT SK F MDVAGYNNIIAR+CEN M+E AE+ + K L+PDV TF
Sbjct: 380 EAIHTFKKAGTKSGSKHFQMDVAGYNNIIARFCENGMMEHAEEFFAALLAKCLTPDVVTF 439
Query: 434 RTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGE 493
RTLIDAYLK E IDD L N+M ++GLRVV SFGT+VF ELI GK E A ILTKMG
Sbjct: 440 RTLIDAYLKREEIDDVLRTLNKMADAGLRVVASFGTRVFGELIKNGKEVESAEILTKMGN 499
Query: 494 KDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEE 553
KDPKPD IYDVVVRGLC+ G D SKD++DQM+KYGVGI PAL++F+ E FG AGR E
Sbjct: 500 KDPKPDSSIYDVVVRGLCSAGELDASKDMLDQMIKYGVGIPPALKEFLIEVFGNAGRASE 559
Query: 554 IERVLNADRWGYAAPVPPPRTSGPPQMTGQQYSGYNRMAREQQFGSNQMAGQQSLGPNQM 613
I+ VL+ +W S P Y R R Q + QMA Q LGP+ M
Sbjct: 560 IKSVLDESKW--------INISRP---------AYARQPRSQH-ETAQMASGQPLGPSPM 601
Query: 614 EGQQHFGSYQRMGQQSFGPNQMAGQQHFTSNQMMGQQSFRPTQMSGYQQFGSNQMMGQQS 673
G+ ++ QQ S+Q +GQ R Q +G S+Q GQ
Sbjct: 602 MGR-----------------SVSRQQSTWSSQTIGQHPSRSFQAAGQHPSQSSQAAGQHP 644
Query: 674 FGPNKMAGEQPFSPFQRMGQQSSGPSQMSGQQSSGPSQMSGQQSSGPAQMLGQ----QSL 729
++ G+ P + GQ S S QQ S SQ GQQ S +Q GQ Q+
Sbjct: 645 SWSSQ-TGQHPLWS-SKTGQHPSWSSHTGEQQPSWSSQTGGQQQSQSSQSRGQQASFQAA 702
Query: 730 GPNQMERQQPQGSYQKWGQQAFGSNQMGGQQPSGYNRMGEQQHFGWQQMSGHQPNKIAQW 789
G Q S+Q GQ S+Q GQ PS W +G P+ W
Sbjct: 703 G---------QTSFQAAGQHLSRSSQAAGQHPS------------WSSHTGQHPS----W 737
Query: 790 TGQPPSAPSQTAGQQQSWQPQTSAQQQSWSQAAEQPPVGSPQE-DQNPSGPPE 841
+ S T QQ SW Q+ QQ SWS EQ P G+ + +P+ PE
Sbjct: 738 S-------SHTGEQQASWSSQSRVQQASWSSNMEQQPSGTSHVIESHPNESPE 783
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739467|emb|CBI29649.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/550 (69%), Positives = 454/550 (82%), Gaps = 12/550 (2%)
Query: 21 SLLHQFHNLALNPNSPNPNLNPISARGYAFSSAEEAAAERRRRKRRLRIEPPLHAIRPNP 80
+L+HQ P P L PI R +AFSSAEEAAAERRRRKRRLRIEPPLHA+R +P
Sbjct: 27 TLIHQ---------QPQPTLVPI--RTFAFSSAEEAAAERRRRKRRLRIEPPLHALRRDP 75
Query: 81 TQPPPR-DPNAPRLPDTTSALVGPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTV 139
+ P PR DPNAPRLPD+TSALVGPRLNLHNRVQSLIRAGDLD AS ARQ+VFS RPTV
Sbjct: 76 SAPRPRPDPNAPRLPDSTSALVGPRLNLHNRVQSLIRAGDLDLASATARQSVFSNTRPTV 135
Query: 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFR 199
FTCNAIIAAMYR KR+DDA+ALF++FF+Q++IVPNIVSYN LINT+CD G+VD G++++R
Sbjct: 136 FTCNAIIAAMYRNKRFDDAIALFQFFFNQSNIVPNIVSYNVLINTHCDAGRVDVGLDIYR 195
Query: 200 RIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259
I+ AP PS TYRHLTKG +D+GRIGEAVDLLR+ML++ GADSLVYNNLISGFLNL
Sbjct: 196 HILANAPFSPSPVTYRHLTKGLIDSGRIGEAVDLLREMLNKGHGADSLVYNNLISGFLNL 255
Query: 260 GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATC 319
N KA ELFDELK+RCLVYDGVVN TFM+W+F +G++K AM SYKSL++R FRMTP TC
Sbjct: 256 ENEAKAIELFDELKERCLVYDGVVNGTFMDWYFTKGREKCAMDSYKSLLDRQFRMTPVTC 315
Query: 320 NTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETF 379
N LLEVLLKH+KK EA ALF+QMLDNH PPN QAVNSD+F++MVNEC K GKF+EAIE F
Sbjct: 316 NALLEVLLKHDKKAEAWALFDQMLDNHTPPNFQAVNSDSFSVMVNECVKLGKFTEAIEVF 375
Query: 380 KKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDA 439
KK G SKPFAMDVAGYNNIIAR+CEN +L EAE+L E+STKSL+PDV +RT I+A
Sbjct: 376 KKVGKKQGSKPFAMDVAGYNNIIARFCENGLLSEAEQLFGELSTKSLTPDVNIYRTFIEA 435
Query: 440 YLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPD 499
Y +ER DDAL++FNR V+SGLRV+VSF KVF+EL+ KGK EC P+LTKMGEKDPKPD
Sbjct: 436 YFGMERADDALQMFNRFVDSGLRVIVSFANKVFDELVNKGKAGECVPVLTKMGEKDPKPD 495
Query: 500 FLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLN 559
Y++V++GLC E LFD S+D++ QM++Y +G+TP+L++FV E FGK GR EEIER+L
Sbjct: 496 PTTYEIVIKGLCKERLFDASRDLMGQMVRYNIGVTPSLREFVVEAFGKEGRSEEIERLLE 555
Query: 560 ADRWGYAAPV 569
A+R G+ +
Sbjct: 556 ANRPGFGINI 565
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255570274|ref|XP_002526097.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223534594|gb|EEF36291.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/721 (59%), Positives = 515/721 (71%), Gaps = 41/721 (5%)
Query: 1 MPLLRLLLRSSNRHHHRLSFS---LLHQFHNLALNPNSPNPNLNPISA-------RGYAF 50
M + RL RSS +FS L+ H + L+P + P NPI++ YAF
Sbjct: 1 MSVYRLFRRSSTS----ATFSHKPLIRALHQITLSPATQIPKTNPITSSPLLPKSHTYAF 56
Query: 51 SSAEEAAAERRRRKRRLRIEPPLHAIRPNPTQPPPRDPNAPRLPDTTSALVGPRLNLHNR 110
SSAEEAAAERRRRKRRLRIEPPLHA++ +P PP RDPNAPRLPD+T+ALVGPRLNLHNR
Sbjct: 57 SSAEEAAAERRRRKRRLRIEPPLHALQRSPN-PPQRDPNAPRLPDSTNALVGPRLNLHNR 115
Query: 111 VQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQAD 170
VQSLIRA DLD AS LAR AV++R RPTVFTCNAIIAAMYRAKRY+DA+ LFKYFF+Q D
Sbjct: 116 VQSLIRAFDLDNASLLARNAVYTRTRPTVFTCNAIIAAMYRAKRYNDAITLFKYFFEQHD 175
Query: 171 IVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEA 230
IVPN+VSYNNLIN++CDEG+VD G+ ++R II AP PS TYRHLTKG +D GR+ EA
Sbjct: 176 IVPNVVSYNNLINSHCDEGRVDVGLEIYRHIIANAPFSPSPVTYRHLTKGLIDVGRVEEA 235
Query: 231 VDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEW 290
VDLLR+ML++ GADSLVYNNLI FL LGNL+KANE F EL +RCL YDG VNAT+M+W
Sbjct: 236 VDLLREMLNKGHGADSLVYNNLIRAFLELGNLDKANEFFSELNERCLWYDGTVNATYMDW 295
Query: 291 WFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPN 350
WF QGKDKE M++YKS ++R ++ P T N LLEVLL++ KKE AQ L+E MLDNH PP
Sbjct: 296 WFKQGKDKEGMENYKSYLDRKLKIPPPTGNALLEVLLRYGKKEAAQCLYEAMLDNHTPPT 355
Query: 351 IQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEM 410
Q VNS+T +IMVN+CFK GKF + + TF+KAGT P SKPF MDVAGYNNII ++CENEM
Sbjct: 356 NQGVNSETISIMVNDCFKEGKFDDVVNTFRKAGTKPGSKPFQMDVAGYNNIIVKFCENEM 415
Query: 411 LEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTK 470
L EAEK E+ +KSLSPDVT++RTLID+YLKVERIDDAL L ++MV+ L VV S+GT+
Sbjct: 416 LAEAEKFFAELCSKSLSPDVTSYRTLIDSYLKVERIDDALRLLSKMVQENLWVVASYGTR 475
Query: 471 VFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG 530
VF ELI GK ECA ILTKMGE+DPKPD +YDVVVRGLC+ G FD SKDI++QMM+YG
Sbjct: 476 VFCELIKNGKAVECAQILTKMGERDPKPDPSVYDVVVRGLCDAGAFDTSKDILEQMMRYG 535
Query: 531 VGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPVPPPRTSGP--PQMTGQQYSGY 588
VG+ PAL++FV + F AG+ +EI VL+ +RW TSGP Q + G+
Sbjct: 536 VGVPPALKEFVVKAFTNAGQSQEIGIVLDENRWR--------NTSGPLYTQRQPRMPWGH 587
Query: 589 NRMAREQQFGSNQMAGQQSLGPNQMEGQQHFGSYQRMGQQ-SFGPNQMAGQQHFTSNQMM 647
+MAR+Q S+ GQ S G M +QH S+ GQ+ S G QMA +Q S
Sbjct: 588 PQMARDQ---SSSFPGQASSGQPPM-ARQHPSSFP--GQEPSSGQPQMAREQ---SPSFP 638
Query: 648 GQQSFRPTQMSGYQQFGSNQMMGQQSFGPNKMAGEQPFSPFQRMGQQSSGPSQMSGQQSS 707
GQ QM+ Q S+ GQ G +MA +Q S GQ SG QM+ QQSS
Sbjct: 639 GQAPLGQPQMARQQ---SSSYPGQAPSGQPQMARQQSSS---YPGQAPSGQPQMARQQSS 692
Query: 708 G 708
Sbjct: 693 A 693
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356541846|ref|XP_003539383.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10270-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/808 (53%), Positives = 540/808 (66%), Gaps = 64/808 (7%)
Query: 46 RGYAFSSAEEAAAERRRRKRRLRIEPPLHAIRPNPTQPPPRDPNAPRLPDTTSALVGPRL 105
R YAFSSAEEAAAERRRRKRRLRIEPPL+AIRP P Q PPRDPNAPRLPD+TSALVGPRL
Sbjct: 24 RSYAFSSAEEAAAERRRRKRRLRIEPPLNAIRPPPQQGPPRDPNAPRLPDSTSALVGPRL 83
Query: 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYF 165
+LHNRVQSLIRAGDL+AAS +AR +VFS RPTVFTCNAIIAAMYR+ RY++A+ALF +F
Sbjct: 84 SLHNRVQSLIRAGDLEAASAIARHSVFSVTRPTVFTCNAIIAAMYRSGRYEEAIALFHFF 143
Query: 166 FDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG 225
F Q++IVPNIVSYNN+INT+CD+G+VD + V+R ++ AP PS TYRHLTKG + +
Sbjct: 144 FKQSNIVPNIVSYNNVINTHCDQGRVDVALEVYRHVVANAPFSPSPVTYRHLTKGLIHSE 203
Query: 226 RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNA 285
RI EA+DLLR+MLS+ GADSLVYNNLISGFL+L N +KA ELFDELK+RCLVYDGVVNA
Sbjct: 204 RISEALDLLREMLSKGHGADSLVYNNLISGFLHLDNFDKAIELFDELKERCLVYDGVVNA 263
Query: 286 TFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN 345
TFMEW+F++G+DK+AM SY+SL++R FRMTPATCN LLE LL H K EA +LF+ MLDN
Sbjct: 264 TFMEWFFSKGRDKDAMDSYRSLLDRQFRMTPATCNVLLEALLNHSKTSEAWSLFDNMLDN 323
Query: 346 HQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARY 405
H PPN QAVNSD+FNIMVN CFK G F A+ TFKK G+ P SKPFAMDVAGYNNIIAR+
Sbjct: 324 HTPPNFQAVNSDSFNIMVNHCFKLGNFELALSTFKKVGSKPNSKPFAMDVAGYNNIIARF 383
Query: 406 CENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVV 465
CEN ML +AE L E+ +KSLSPDV T RTLI+ YL+++RIDDAL +F+RMV+SGLRVV
Sbjct: 384 CENAMLSQAETLFEELCSKSLSPDVPTHRTLIEVYLRMDRIDDALRIFHRMVDSGLRVVA 443
Query: 466 SFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQ 525
+FG VF+ELI GK +CA IL+KMGEKDPKPD Y+VV++GLC +GL D S++++D+
Sbjct: 444 TFGNTVFHELIKNGKAIDCAQILSKMGEKDPKPDPTCYEVVIKGLCADGLLDKSRELLDE 503
Query: 526 MMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPVPPPRTSGPPQMTGQQY 585
+M+YGVG+T +L++FV E F KAGRG+EIER+L+ +R+ Y PPR + P +
Sbjct: 504 VMRYGVGVTSSLREFVTEVFKKAGRGDEIERLLDMNRFAYTPRPSPPRPAYCPPL----- 558
Query: 586 SGYNRMAREQQFGSNQMAGQQSLGPNQMEGQQHFGSYQRMGQQSFGPNQMAGQQHFTSNQ 645
+ Q + S P +M QQH +M P A Q F
Sbjct: 559 -----VRSPSQMAAGAAHSPPSGFPTRMAAQQHPTPPPQMTGAPHNPPSGAPHQVFEH-- 611
Query: 646 MMGQQSFRPTQMSGYQQ--FGSNQMMGQQSFGPNKMAGEQPFSPFQRMGQQSSGPSQMSG 703
Q+ P+QM+G Q +G + M G + G QP+ P S+
Sbjct: 612 ---QRPPLPSQMTGMHQPSWGLSPPMTGPHPGSSPNTG-QPYHP---------NASEHHP 658
Query: 704 QQSSGPSQMSGQQ--SSGPA-QMLGQQSLGPNQMERQQPQGSYQKWGQQAFGSNQMGGQQ 760
S QM+ Q SGP+ QM G Q G P+G Q+W ++ +
Sbjct: 659 HVSRVAPQMTAQHYTPSGPSPQMAGHQPYG-------TPRGP-QQWAERQY--------P 702
Query: 761 PSGYNRMGEQQHFGWQQMSGHQPNKIAQWTGQPPSAPSQTAGQQQSWQPQTSAQQQSWSQ 820
PSG + QH ++G P ++ W S PS A + S SA S
Sbjct: 703 PSGLSPPMAGQH---HPLAGPTP-PMSGW-----SIPSNGASAKMSPPYHISAGPSSQVT 753
Query: 821 AAEQPPVGSPQEDQNPSGPPEWQENHQR 848
P + S PP ++E+HQ+
Sbjct: 754 GPYHP---------SSSTPPHFEESHQQ 772
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357520879|ref|XP_003630728.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355524750|gb|AET05204.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/829 (53%), Positives = 557/829 (67%), Gaps = 61/829 (7%)
Query: 43 ISARGYAFSSAEEAAAERRRRKRRLRIEPPLHAIRPNPTQPPPRDPNAPRLPDTTSALVG 102
I+ R +AFSSAEEAAAERRRRKRRLRIEPPL+AIRP P Q PRDPNAPRLPD+TS+LVG
Sbjct: 22 ITTRSFAFSSAEEAAAERRRRKRRLRIEPPLNAIRP-PPQHQPRDPNAPRLPDSTSSLVG 80
Query: 103 PRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALF 162
PRL+LHNRVQSLIRA DLDAAS AR +VFS RPTVFTCNAIIAAMYRAKRY DA+ALF
Sbjct: 81 PRLSLHNRVQSLIRADDLDAASAAARHSVFSSTRPTVFTCNAIIAAMYRAKRYSDAIALF 140
Query: 163 KYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFV 222
+FF+Q+++VPNIVSYNN+INT+CDEG+VD + V+R IIE AP GPSS TYRHLTKG +
Sbjct: 141 HFFFNQSNLVPNIVSYNNVINTHCDEGRVDVALEVYRHIIEHAPFGPSSVTYRHLTKGLI 200
Query: 223 DAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGV 282
GRI EA DLL +ML++ GADS+VYNNLISGFL LGNL+KANELFDELK RC VYDGV
Sbjct: 201 SVGRIDEANDLLVEMLAKNHGADSMVYNNLISGFLELGNLDKANELFDELKGRCSVYDGV 260
Query: 283 VNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQM 342
VNAT+MEW+F QG+DKEAM SYKS M+R FRMTPATCN LLEVLLKH+KK+EA LF+QM
Sbjct: 261 VNATYMEWFFKQGRDKEAMDSYKSFMDREFRMTPATCNVLLEVLLKHDKKKEAWKLFDQM 320
Query: 343 LDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNII 402
LDNH PPN QAVNSDTFNIMVNECFKHGKF EA++TF+K GT SKPF MDVAGY NI+
Sbjct: 321 LDNHTPPNFQAVNSDTFNIMVNECFKHGKFDEALDTFRKVGTKINSKPFIMDVAGYRNIV 380
Query: 403 ARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLR 462
+R+CE M+ EA+ L +E +K LS DV T +ID YLKV IDDAL +FN+MV+ GLR
Sbjct: 381 SRFCEIGMMSEADTLFQESLSKHLSADVPTHTAMIDGYLKVGNIDDALRVFNKMVDRGLR 440
Query: 463 VVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDI 522
V +FG +VF+ELI GKV ECA IL+KMG +DPKPD Y+VV++GLC EGL D S+++
Sbjct: 441 VTATFGNRVFDELIKNGKVIECAQILSKMGGQDPKPDPTCYEVVIKGLCAEGLLDKSREL 500
Query: 523 VDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPVPPPRTSGPPQMTG 582
+D++M+YGVG+TPAL++ V + F AG+GEEIER+L+ +R GY + P P +
Sbjct: 501 LDEVMRYGVGVTPALRESVTKVFKNAGKGEEIERLLDTNRIGYNSRPRPAYRPPPARYPS 560
Query: 583 QQYSGYNRMAREQQ----FGSNQMAGQQSLG---PNQMEGQQHFGSYQRMGQQSFGPNQM 635
Q +N Q S QMAG S P+QM Q + + R Q + NQ
Sbjct: 561 QLDRTHNPTYGHPQQRPPLPSAQMAGVHSPPSEFPSQMAAPQRYQT--RSSQVAGTHNQS 618
Query: 636 AGQQ----HFTSNQMMGQQ---SFRPTQMSGYQQFGSNQMMGQQSFGPNKMAGEQPFSPF 688
+G Q HF + ++ G S P+Q + YQ++ ++ P+++AG
Sbjct: 619 SGFQNSPPHFDT-RIGGTHNPLSEFPSQTAAYQRYQTS---------PSQVAGTH----N 664
Query: 689 QRMGQQSSGP---SQMSGQQ---SSGPSQMSGQQ--SSGPAQMLGQQSLGPNQMERQQPQ 740
Q G Q+S P +Q+ G S PSQ + Q + P+Q+ G + + + Q
Sbjct: 665 QPSGFQNSPPHFDTQIGGTHNLLSEFPSQTAAHQRYQTSPSQVAGTHNQPSGFLAQMAAQ 724
Query: 741 GSYQKWGQQAFGSNQMGGQQPSGY--NRMGEQQHFGWQQMSG--HQPNKIAQWTGQPP-- 794
S + + G++ SGY G+Q+ QM+G HQ W PP
Sbjct: 725 NSPPHFDTRMAGADN--NHFSSGYPPQISGQQRPPLSPQMTGIHHQ----TPWGVSPPMN 778
Query: 795 ------SAPSQTAGQQQSWQPQ-TSAQQQSWSQAAEQP--PVG-SPQED 833
+ PS GQ Q Q T Q++ Q+ +P P G SPQ D
Sbjct: 779 RSQMPTTGPSHLTGQPHHPQYQHTPRMQRASPQSTAKPYTPYGPSPQID 827
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 851 | ||||||
| TAIR|locus:2012868 | 913 | GRP23 "glutamine-rich protein | 0.871 | 0.812 | 0.483 | 1.1e-172 | |
| TAIR|locus:2082871 | 629 | emb1796 "embryo defective 1796 | 0.538 | 0.728 | 0.343 | 2.4e-67 | |
| TAIR|locus:2100977 | 403 | AT3G60960 [Arabidopsis thalian | 0.391 | 0.826 | 0.335 | 5.6e-42 | |
| TAIR|locus:2146559 | 435 | AT5G28340 [Arabidopsis thalian | 0.334 | 0.655 | 0.333 | 1.4e-34 | |
| TAIR|locus:2832005 | 390 | AT5G28380 [Arabidopsis thalian | 0.334 | 0.730 | 0.333 | 1.4e-34 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.551 | 0.784 | 0.231 | 7.3e-34 | |
| TAIR|locus:2101002 | 412 | AT3G60980 [Arabidopsis thalian | 0.257 | 0.531 | 0.375 | 2.5e-31 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.466 | 0.531 | 0.251 | 4.1e-30 | |
| TAIR|locus:2039415 | 743 | AT2G16880 "AT2G16880" [Arabido | 0.484 | 0.554 | 0.238 | 1.9e-29 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.521 | 0.588 | 0.225 | 2.5e-29 |
| TAIR|locus:2012868 GRP23 "glutamine-rich protein 23" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1618 (574.6 bits), Expect = 1.1e-172, Sum P(2) = 1.1e-172
Identities = 367/759 (48%), Positives = 448/759 (59%)
Query: 43 ISARGYAFSSXXXXXXXXXXXXXXXXXXPPLHAIXXXXXXXXXXXXXXXXXX-DTTSALV 101
I R AFSS PPLHA+ D+TSALV
Sbjct: 83 IPHRTMAFSSAEEAAAERRRRKRRLRIEPPLHALRRDPSAPPPKRDPNAPRLPDSTSALV 142
Query: 102 GPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVAL 161
G RLNLHNRVQSLIRA DLDAAS LARQ+VFS RPTVFTCNAIIAAMYRAKRY ++++L
Sbjct: 143 GQRLNLHNRVQSLIRASDLDAASKLARQSVFSNTRPTVFTCNAIIAAMYRAKRYSESISL 202
Query: 162 FKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGF 221
F+YFF Q++IVPN+VSYN +IN +CDEG VDE + V+R I+ AP PSS TYRHLTKG
Sbjct: 203 FQYFFKQSNIVPNVVSYNQIINAHCDEGNVDEALEVYRHILANAPFAPSSVTYRHLTKGL 262
Query: 222 VDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDG 281
V AGRIG+A LLR+MLS+ ADS VYNNLI G+L+LG+ +KA E FDELK +C VYDG
Sbjct: 263 VQAGRIGDAASLLREMLSKGQAADSTVYNNLIRGYLDLGDFDKAVEFFDELKSKCTVYDG 322
Query: 282 VVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTXXXXXXXXXXXXXAQALFEQ 341
+VNATFME+WF +G DKEAM+SY+SL+++ FRM P T N A ALF +
Sbjct: 323 IVNATFMEYWFEKGNDKEAMESYRSLLDKKFRMHPPTGNVLLEVFLKFGKKDEAWALFNE 382
Query: 342 MLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNI 401
MLDNH PPNI +VNSDT IMVNECFK G+FSEAI TFKK G+ SKPF MD GY NI
Sbjct: 383 MLDNHAPPNILSVNSDTVGIMVNECFKMGEFSEAINTFKKVGSKVTSKPFVMDYLGYCNI 442
Query: 402 IARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGL 461
+ R+CE ML EAE+ E ++SL D + R +IDAYLK ERIDDA+++ +RMV+ L
Sbjct: 443 VTRFCEQGMLTEAERFFAEGVSRSLPADAPSHRAMIDAYLKAERIDDAVKMLDRMVDVNL 502
Query: 462 RVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKD 521
RVV FG +VF ELI GK+ E A +LTKMGE++PKPD IYDVVVRGLC+ D +KD
Sbjct: 503 RVVADFGARVFGELIKNGKLTESAEVLTKMGEREPKPDPSIYDVVVRGLCDGDALDQAKD 562
Query: 522 IVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPVPPPRTSG--PPQ 579
IV +M+++ VG+T L++F+ E F KAGR EEIE++LN+ A PV SG PP+
Sbjct: 563 IVGEMIRHNVGVTTVLREFIIEVFEKAGRREEIEKILNS----VARPVRNAGQSGNTPPR 618
Query: 580 MT---GQQYSGYNRMAREQQFGSNQMAGQQSLGPNQMEGQQHFGSYQ-RMGQQSFGPNQM 635
+ G + + + S + S N GQ G+Y+ GQ N
Sbjct: 619 VPAVFGTTPAAPQQPRDRAPWTSQGVVHSNSGWANGTAGQTAGGAYKANNGQNPSWSNTS 678
Query: 636 AGQQHFT-SNQMMGQQSFR-PTQMSGYQQFGSNQMMGQQSFGPNKMAGEQPFSPFQRXXX 693
QQ + SNQ GQQ Q GYQQ Q QQS G + +G Q Q
Sbjct: 679 DNQQQQSWSNQTAGQQPPSWSRQAPGYQQ---QQSWSQQS-GWSSPSGHQQSWTNQTAGQ 734
Query: 694 XXXXXXXXXXXXXXXXXXXXXXXXXXXAQMLGQQSLGPNQMERQQPQGSYQKWGQQAFGS 753
Q GQQ NQ QQ Q + Q G Q +
Sbjct: 735 QQPWANQTPGQQQQWANQTPGQQQQLANQTPGQQQQWANQTPGQQQQWANQNNGHQQPWA 794
Query: 754 NQMGGQQPSGYNRMGEQQHFGWQQMSGHQPNKIAQWTGQ 792
NQ G Q S N+ QQ Q +G Q Q TGQ
Sbjct: 795 NQNTGHQQSWANQTPSQQQPWANQTTGQQQGWGNQTTGQ 833
|
|
| TAIR|locus:2082871 emb1796 "embryo defective 1796" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 161/469 (34%), Positives = 250/469 (53%)
Query: 95 DTTSALVGPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKR 154
++ SALVG RL+LHN + LIR DL+ A+ R +V+S RPT+FT N ++AA R +
Sbjct: 86 ESVSALVGKRLDLHNHILKLIRENDLEEAALYTRHSVYSNCRPTIFTVNTVLAAQLRQAK 145
Query: 155 YDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTY 214
Y + L F +QA I PNI++YN + Y D K + + ++ I+ AP+ PS T+
Sbjct: 146 YGALLQLHG-FINQAGIAPNIITYNLIFQAYLDVRKPEIALEHYKLFIDNAPLNPSIATF 204
Query: 215 RHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQ 274
R L KG V + +A+++ DM + D +VY+ L+ G + + + +L+ ELK+
Sbjct: 205 RILVKGLVSNDNLEKAMEIKEDMAVKGFVVDPVVYSYLMMGCVKNSDADGVLKLYQELKE 264
Query: 275 RC--LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN--FRMTPATCNTXXXXXXXXX 330
+ V DGVV M+ +F + +KEAM+ Y+ + N RM+ N
Sbjct: 265 KLGGFVDDGVVYGQLMKGYFMKEMEKEAMECYEEAVGENSKVRMSAMAYNYVLEALSENG 324
Query: 331 XXXXAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKP 390
A LF+ + H PP AVN TFN+MVN GKF EA+E F++ G K P
Sbjct: 325 KFDEALKLFDAVKKEHNPPRHLAVNLGTFNVMVNGYCAGGKFEEAMEVFRQMGDF-KCSP 383
Query: 391 FAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDAL 450
D +NN++ + C+NE+L EAEKL E+ K++ PD T+ L+D K +ID+
Sbjct: 384 ---DTLSFNNLMNQLCDNELLAEAEKLYGEMEEKNVKPDEYTYGLLMDTCFKEGKIDEGA 440
Query: 451 ELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGL 510
+ MVES LR ++ ++ ++LI GK+ + M K K D Y ++R L
Sbjct: 441 AYYKTMVESNLRPNLAVYNRLQDQLIKAGKLDDAKSFFDMMVSK-LKMDDEAYKFIMRAL 499
Query: 511 CNEGLFDMSKDIVDQMMKYG-VGITPALQDFVRETFGKAGRGEEIERVL 558
G D IVD+M+ V ++ LQ+FV+E K GR ++E+++
Sbjct: 500 SEAGRLDEMLKIVDEMLDDDTVRVSEELQEFVKEELRKGGREGDLEKLM 548
|
|
| TAIR|locus:2100977 AT3G60960 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 449 (163.1 bits), Expect = 5.6e-42, P = 5.6e-42
Identities = 124/370 (33%), Positives = 189/370 (51%)
Query: 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRI---RPTVFTCNAIIAAMYRAKRYDDAVAL 161
++L RV+++I +LD AS L+R AV + R TVF CN++I AM AKRYDDA++L
Sbjct: 51 ISLRYRVRAMIEMSNLDEASKLSRLAVLNGFLVDRDTVFICNSVIGAMCSAKRYDDAISL 110
Query: 162 FKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGF 221
F YFF+++ +PN +S + +I +CD+G VD+ + ++R I+ V P TY L K
Sbjct: 111 FNYFFNESQTLPNTLSCDLIIKAHCDQGHVDDALELYRHILLDGRVAPGIETYMILAKAL 170
Query: 222 VDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDG 281
VDA R EA L R M +VY+ LI GFL++GN KA+++F+ELK G
Sbjct: 171 VDAKRFDEACVLARSMSC----CSFMVYDILIRGFLDIGNFVKASQIFEELKGLDSKLPG 226
Query: 282 --------VVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTXXXXXXXXXXXX 333
+ N +FM +WF QGKD+EAM+ +L + + P N
Sbjct: 227 REYHKANAIFNVSFMNYWFKQGKDEEAMEILANLEDAQV-LNPIVGNRVLQVLVKHGKKT 285
Query: 334 XAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAM 393
A LF +M I+ +S+T +IM +E F SE F++ K +
Sbjct: 286 EAWELFGEM--------IEICDSETVDIM-SEYF-----SEKTVPFERLRKTCYRK-MIV 330
Query: 394 DVAGYNNII-ARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALEL 452
+ + + A EM + + + PD+ FR +I+ Y+ V R+DDA++
Sbjct: 331 SLCEHGKVSDAEKLFAEMFTDVDG-----GDLLVGPDLLIFRAMINGYVSVGRVDDAIKT 385
Query: 453 FNRMVESGLR 462
N+M S LR
Sbjct: 386 LNKMRISNLR 395
|
|
| TAIR|locus:2146559 AT5G28340 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 382 (139.5 bits), Expect = 1.4e-34, P = 1.4e-34
Identities = 106/318 (33%), Positives = 169/318 (53%)
Query: 155 YDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTY 214
YD+A++LF YFF+++ +PN++S N +I +CD+G VD + ++R I+ + P TY
Sbjct: 133 YDEAISLFDYFFNESQTLPNMLSCNLIIKAHCDQGSVDHALELYRHILLDGSLAPGIETY 192
Query: 215 RHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELK- 273
R LTK V A R+ EA D++R M SR D VY+ LI GFL+ G +A+++F+ELK
Sbjct: 193 RILTKALVGAKRLDEACDVVRSM-SR---CDFAVYDILIRGFLDKGKFVRASQIFEELKG 248
Query: 274 -QRCLVYDG------VVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTXXXXX 326
L + + N +FM++WF QGKD+EAM+ + +L E + + N
Sbjct: 249 PNSKLPWRNYHKAIAIFNVSFMDYWFKQGKDEEAMEIFATL-EHAELLNTISGNGVLKCL 307
Query: 327 XXXXXXXXAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHP 386
A LF M I+ +S+T I+++ K G F E F++
Sbjct: 308 VEHGRKTEAWELFLDM--------IEICDSETVGIIMS---KEGFFGEKTIPFERVRRTC 356
Query: 387 KSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSL--SPDVTTFRTLIDAYLKVE 444
++ A + N++ E E L A+ + ++ L PDV+TFR +I+ Y+KV
Sbjct: 357 YTRMIA-SLCQQGNML----EAEKLF-AD-MFADVDGDDLLAGPDVSTFRAMINGYVKVG 409
Query: 445 RIDDALELFNRMVESGLR 462
R+DDA++ N+M S LR
Sbjct: 410 RVDDAIKTLNKMKISNLR 427
|
|
| TAIR|locus:2832005 AT5G28380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 382 (139.5 bits), Expect = 1.4e-34, P = 1.4e-34
Identities = 106/318 (33%), Positives = 169/318 (53%)
Query: 155 YDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTY 214
YD+A++LF YFF+++ +PN++S N +I +CD+G VD + ++R I+ + P TY
Sbjct: 88 YDEAISLFDYFFNESQTLPNMLSCNLIIKAHCDQGSVDHALELYRHILLDGSLAPGIETY 147
Query: 215 RHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELK- 273
R LTK V A R+ EA D++R M SR D VY+ LI GFL+ G +A+++F+ELK
Sbjct: 148 RILTKALVGAKRLDEACDVVRSM-SR---CDFAVYDILIRGFLDKGKFVRASQIFEELKG 203
Query: 274 -QRCLVYDG------VVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTXXXXX 326
L + + N +FM++WF QGKD+EAM+ + +L E + + N
Sbjct: 204 PNSKLPWRNYHKAIAIFNVSFMDYWFKQGKDEEAMEIFATL-EHAELLNTISGNGVLKCL 262
Query: 327 XXXXXXXXAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHP 386
A LF M I+ +S+T I+++ K G F E F++
Sbjct: 263 VEHGRKTEAWELFLDM--------IEICDSETVGIIMS---KEGFFGEKTIPFERVRRTC 311
Query: 387 KSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSL--SPDVTTFRTLIDAYLKVE 444
++ A + N++ E E L A+ + ++ L PDV+TFR +I+ Y+KV
Sbjct: 312 YTRMIA-SLCQQGNML----EAEKLF-AD-MFADVDGDDLLAGPDVSTFRAMINGYVKVG 364
Query: 445 RIDDALELFNRMVESGLR 462
R+DDA++ N+M S LR
Sbjct: 365 RVDDAIKTLNKMKISNLR 382
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 392 (143.0 bits), Expect = 7.3e-34, P = 7.3e-34
Identities = 113/488 (23%), Positives = 216/488 (44%)
Query: 108 HNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFD 167
+N ++ ++R G+L+ V+ P + C +I R + A + + +
Sbjct: 106 NNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILE-ILE 164
Query: 168 QADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRI 227
+ VP++++YN +I+ YC G+++ ++V R+ V P TY + + D+G++
Sbjct: 165 GSGAVPDVITYNVMISGYCKAGEINNALSVLDRM----SVSPDVVTYNTILRSLCDSGKL 220
Query: 228 GEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATF 287
+A+++L ML R D + Y LI + A +L DE++ R D V
Sbjct: 221 KQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVL 280
Query: 288 MEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTXXXXXXXXXXXXXAQALFEQMLDNHQ 347
+ +G+ EA++ + + T N A+ L ML
Sbjct: 281 VNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF 340
Query: 348 PPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCE 407
P++ TFNI++N + G AI+ +K H +P ++ YN ++ +C+
Sbjct: 341 SPSVV-----TFNILINFLCRKGLLGRAIDILEKMPQHG-CQPNSLS---YNPLLHGFCK 391
Query: 408 NEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLR-VVVS 466
+ ++ A + L + ++ PD+ T+ T++ A K +++DA+E+ N++ G V+++
Sbjct: 392 EKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLIT 451
Query: 467 FGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQM 526
+ T V + L GK + +L +M KD KPD + Y +V GL EG D + +
Sbjct: 452 YNT-VIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEF 510
Query: 527 MKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPVPPPRTSGPPQMTGQQYS 586
+ +GI P F G + + +R ++ + P TS + G Y
Sbjct: 511 ER--MGIRPNAVTFNSIMLGLC-KSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYE 567
Query: 587 GYNRMARE 594
G + A E
Sbjct: 568 GMAKEALE 575
|
|
| TAIR|locus:2101002 AT3G60980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 352 (129.0 bits), Expect = 2.5e-31, P = 2.5e-31
Identities = 92/245 (37%), Positives = 131/245 (53%)
Query: 238 LSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLV-------------YDGVVN 284
++R D + YNNLI GFL+LGN +KAN + E K+ L+ Y+ V
Sbjct: 172 VNRTTYPDHVAYNNLIRGFLDLGNFKKANLVLGEFKRLFLIALSETKDDLHHSNYENRVA 231
Query: 285 ---ATFMEWWFNQGKDKEAMQSY-KSLMERNFRMTPATCNTXXXXXXXXXXXXXAQALFE 340
ATFME+WF QGK EAM+ Y + ++ + T N A AL+
Sbjct: 232 FLMATFMEYWFKQGKQVEAMECYNRCVLSNRLLVCAETGNALLKVLLKYGEKKNAWALYH 291
Query: 341 QMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNN 400
++LD + ++SDT IMV+ECF G FSEA+ET+KKA PK+ D
Sbjct: 292 ELLDKNGTGK-GCLDSDTIKIMVDECFDMGWFSEAMETYKKA--RPKN-----DYLSDKY 343
Query: 401 IIARYCENEMLEEAEKLLREISTKSLSP-DVTTFRTLIDAYLKVERIDDALELFNRMVES 459
II R+CEN ML EAE + + DV T++T+IDAY+K RI DA++ N+M+++
Sbjct: 344 IITRFCENRMLSEAESVFVDSLADDFGYIDVNTYKTMIDAYVKAGRIHDAIKTSNKMIDA 403
Query: 460 GLRVV 464
L+ V
Sbjct: 404 TLKEV 408
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 363 (132.8 bits), Expect = 4.1e-30, P = 4.1e-30
Identities = 103/410 (25%), Positives = 183/410 (44%)
Query: 103 PRLNLHNRV-QSLIRAG-DLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVA 160
P + +N V + IR+ ++ A + ++ + S++ P VFT N +I A D A+
Sbjct: 167 PGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALT 226
Query: 161 LFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKG 220
LF + +PN+V+YN LI+ YC K+D+G + R + + P+ +Y + G
Sbjct: 227 LFDKM-ETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKG-LEPNLISYNVVING 284
Query: 221 FVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYD 280
GR+ E +L +M R D + YN LI G+ GN +A + E+ + L
Sbjct: 285 LCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPS 344
Query: 281 GVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTXXXXXXXXXXXXXAQALFE 340
+ + + G AM+ + R T T A +
Sbjct: 345 VITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLR 404
Query: 341 QMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNN 400
+M DN P++ T+N ++N GK +AI + K K + DV Y+
Sbjct: 405 EMNDNGFSPSVV-----TYNALINGHCVTGKMEDAIAVLEDM----KEKGLSPDVVSYST 455
Query: 401 IIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESG 460
+++ +C + ++EA ++ RE+ K + PD T+ +LI + + R +A +L+ M+ G
Sbjct: 456 VLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVG 515
Query: 461 LRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGL 510
L T + N +G + + + +M EK PD + Y V++ GL
Sbjct: 516 LPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGL 565
|
|
| TAIR|locus:2039415 AT2G16880 "AT2G16880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 357 (130.7 bits), Expect = 1.9e-29, P = 1.9e-29
Identities = 101/424 (23%), Positives = 198/424 (46%)
Query: 111 VQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQAD 170
+ + + G A + ++ + +++P + TCN ++ + R + + F D
Sbjct: 138 LSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVK 197
Query: 171 I-VP-NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIG 228
I V N+ ++N L+N YC EGK+++ + + R++ V P + TY + K GR+
Sbjct: 198 IGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLS 257
Query: 229 EAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFM 288
+ +LL DM L + + YNNL+ G+ LG+L++A ++ + +KQ ++ D +
Sbjct: 258 DLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILI 317
Query: 289 EWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTXXXXXXXXXXXXXAQALFEQMLDNHQP 348
N G +E ++ ++ + T NT A+ L EQM +N
Sbjct: 318 NGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQM-END-- 374
Query: 349 PNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCEN 408
++A N T NI + K K EA+ +K F+ D+ Y+ +I Y +
Sbjct: 375 -GVKA-NQVTHNISLKWLCKEEK-REAVT--RKVKELVDMHGFSPDIVTYHTLIKAYLKV 429
Query: 409 EMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRV-VVSF 467
L A +++RE+ K + + T T++DA K ++D+A L N + G V V++
Sbjct: 430 GDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTY 489
Query: 468 GTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMM 527
GT + + KV + + +M + P ++ ++ GLC+ G +++ + D++
Sbjct: 490 GTLIMG-FFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELA 548
Query: 528 KYGV 531
+ G+
Sbjct: 549 ESGL 552
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 356 (130.4 bits), Expect = 2.5e-29, P = 2.5e-29
Identities = 103/456 (22%), Positives = 194/456 (42%)
Query: 101 VGPRLNLHN-RVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAV 159
+ P ++ N +++L RA L A + + P T ++ D A+
Sbjct: 185 IKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGAL 244
Query: 160 ALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTK 219
+ + + N VS N +++ +C EG+V++ +N + + P T+ L
Sbjct: 245 RIREQMVEFGCSWSN-VSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVN 303
Query: 220 GFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVY 279
G AG + A++++ ML D YN++ISG LG +++A E+ D++ R
Sbjct: 304 GLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSP 363
Query: 280 DGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTXXXXXXXXXXXXXAQALF 339
+ V T + + + +EA + + L + T N+ A LF
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 423
Query: 340 EQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYN 399
E+M P+ T+N++++ GK EA+ K+ + A V YN
Sbjct: 424 EEMRSKGCEPD-----EFTYNMLIDSLCSKGKLDEALNMLKQM----ELSGCARSVITYN 474
Query: 400 NIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVES 459
+I +C+ EAE++ E+ +S + T+ TLID K R++DA +L ++M+
Sbjct: 475 TLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME 534
Query: 460 GLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMS 519
G + + G + + A I+ M +PD + Y ++ GLC G +++
Sbjct: 535 GQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVA 594
Query: 520 KDIVDQMMKYGVGITP-ALQDFVRETFGKAGRGEEI 554
++ + G+ +TP A ++ F K E I
Sbjct: 595 SKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAI 630
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SY69 | PPR29_ARATH | No assigned EC number | 0.5254 | 0.8954 | 0.8346 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 851 | |||
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 1e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-11 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-11 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 6e-11 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-09 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 6e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-09 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 8e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-08 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 7e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-07 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 5e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 6e-07 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-06 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 5e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-05 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 2e-04 | |
| pfam03157 | 779 | pfam03157, Glutenin_hmw, High molecular weight glu | 2e-04 | |
| pfam03157 | 779 | pfam03157, Glutenin_hmw, High molecular weight glu | 2e-04 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 3e-04 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 5e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-04 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 8e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam03157 | 779 | pfam03157, Glutenin_hmw, High molecular weight glu | 0.002 | |
| pfam03157 | 779 | pfam03157, Glutenin_hmw, High molecular weight glu | 0.002 | |
| pfam03157 | 779 | pfam03157, Glutenin_hmw, High molecular weight glu | 0.002 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.003 | |
| pfam03157 | 779 | pfam03157, Glutenin_hmw, High molecular weight glu | 0.004 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 1e-14
Identities = 58/296 (19%), Positives = 76/296 (25%), Gaps = 17/296 (5%)
Query: 556 RVLNADRWGYAAPVPPPRTSGPPQMTGQQYSGYNRMAREQQFGSN--QMAGQQSLGPNQM 613
RV G A + + P Q A+ Q G N Q P QM
Sbjct: 137 RVGTMQPGGQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQPPQM 196
Query: 614 ----EGQQHFGSYQRMGQQSFGPNQMAGQQHFTSNQMMGQQSFRPTQMSGYQQFGSNQMM 669
+ Q G Q Q QQ + + Q Q
Sbjct: 197 GQPGMPGGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQ 256
Query: 670 GQQSFGPNKMAGEQPFSPFQRMGQQSSGPSQMSGQQSSGPSQMSGQQSSGPAQMLGQQSL 729
GQ P +M G Q P Q+ Q G + QM G GP Q +G
Sbjct: 257 GQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQ 316
Query: 730 GPNQMERQQPQGSYQKWGQQAFGSNQMGGQQPSGYNRMGEQQHFGWQQMSGHQPNKIAQW 789
P + + QM + G + +QQ QQ G+ P
Sbjct: 317 RPGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQ----QQQGGNHPA----- 367
Query: 790 TGQPPSAPSQTAGQQQSWQPQTSAQQQSWSQAAEQPPVGSPQEDQNPSGPPEWQEN 845
+Q GQ Q P+ Q S P Q
Sbjct: 368 --AHQQQMNQQVGQGGQMVALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQ 421
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 1e-11
Identities = 90/410 (21%), Positives = 166/410 (40%), Gaps = 66/410 (16%)
Query: 137 PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMN 196
PT+ T N +++ ++ D A+ + + +A + + Y LI+T GKVD
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLR-LVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493
Query: 197 VFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256
VF + A V + +T+ L G AG++ +A M S+ + D +V+N LIS
Sbjct: 494 VFHE-MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552
Query: 257 LNLGNLEKANELFDELKQRC--LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRM 314
G +++A ++ E+K + D + M+ N G+ A + Y+ + E N +
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612
Query: 315 TPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHG--KF 372
TP + I VN C + G F
Sbjct: 613 TPE----------------------------------------VYTIAVNSCSQKGDWDF 632
Query: 373 SEAI-ETFKKAGTHPKSKPFA--MDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPD 429
+ +I + KK G P F+ +DVAG+ L++A ++L++ + +
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGH---------AGDLDKAFEILQDARKQGIKLG 683
Query: 430 VTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELIT---KGKVAECA- 485
++ +L+ A + ALEL+ + LR VS N LIT +G A
Sbjct: 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS----TMNALITALCEGNQLPKAL 739
Query: 486 PILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITP 535
+L++M P+ + Y +++ + D+ D++ Q + G+
Sbjct: 740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789
|
Length = 1060 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 2e-11
Identities = 57/266 (21%), Positives = 75/266 (28%), Gaps = 13/266 (4%)
Query: 571 PPRTSGPPQMTGQQYSGYNRMAREQQFGSNQMAGQQSLGPNQMEGQQHFGSYQRMGQQSF 630
R P G +R+ Q G QQS G Q + G Q GQ
Sbjct: 118 NVRGQMPMGAAGMGPHQMSRVGTMQPGGQAGGMMQQSSGQPQSQQPNQMGPQQ--GQAQG 175
Query: 631 GPNQMAGQQHFTSNQMMGQQSFRPTQMSGYQQFGSNQMMGQQSFGPNKMAGEQPFSPFQR 690
M Q Q Q +P M G G Q Q G + + +
Sbjct: 176 QAGGMNQGQQGPVGQQQPPQMGQPG-MPGGGGQGQMQQ-QGQPGGQQQQNPQMQQQLQNQ 233
Query: 691 MGQQSSGPSQMSGQQSSGPSQMSGQQSSGPAQMLGQQSLGPNQMERQQPQGSYQKWGQQA 750
QQ + Q+ Q GQ P QM G G Q+ QQ Q Q
Sbjct: 234 QQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQG----GQMQVPMQQQPPQQQPQQSQL 289
Query: 751 FGSNQMGGQQPSGYNRMGEQQHFGWQQMSGHQPNKIAQWTGQPPSAPSQTAGQQQSWQPQ 810
M Q G+ +P + Q GQ +AGQQQ Q +
Sbjct: 290 ----GMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQ-GGQAVQQGVMSAGQQQLKQMK 344
Query: 811 TSAQQQSWSQAAEQPPVGSPQEDQNP 836
+ +Q G +
Sbjct: 345 LRNMRGQQQTQQQQQQQGGNHPAAHQ 370
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 3e-11
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 394 DVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLK 442
DV YN +I YC+ +EEA KL E+ + + P+V T+ LID K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.1 bits (154), Expect = 6e-11
Identities = 45/237 (18%), Positives = 87/237 (36%), Gaps = 5/237 (2%)
Query: 114 LIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMY-RAKRYDDAVALFKYFFDQADIV 172
L G+L A L +A+ + ++A + R ++A+ L + + +
Sbjct: 33 LELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLP 92
Query: 173 PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVD 232
+ NL GK +E + + + + P + L + G EA++
Sbjct: 93 NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA-LYELGDYEEALE 151
Query: 233 LLRDML--SRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEW 290
L L +L + L + LG E+A EL ++ + D
Sbjct: 152 LYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLL 211
Query: 291 WFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQ 347
+ GK +EA++ Y+ +E + L +LL+ + EEA E+ L+
Sbjct: 212 YLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALELDP 267
|
Length = 291 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 1e-09
Identities = 48/309 (15%), Positives = 61/309 (19%), Gaps = 39/309 (12%)
Query: 539 DFVRETFGKAGRGEEIERVLNADRWGYAAPVPPPRTSGPPQMTGQQY-----SGYNRMA- 592
DF ET K + +TS +
Sbjct: 63 DFGGET-AKLSAAVRYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQP 121
Query: 593 ------REQQFGSNQMAGQQSLGPNQMEGQQHFGSYQRMGQQSFGPNQMAGQQHFTSNQM 646
+ +S P Q S + + Q Q Q
Sbjct: 122 DPSLWGTAPKPEPQPPQAPES-QPQPQTPAQKMLSLEEVEAQLQQRQQAPQLP--QPPQQ 178
Query: 647 MGQQSFRPTQMSGYQQFGSNQMMGQQSFGPNKMAGEQPFSPFQRMGQQSSGPSQMSGQQS 706
+ Q P Q + Q G P P Q QQ + Q
Sbjct: 179 VLPQGMPPRQAAFPQ-------QGPPEQPPG-YPQPPQGHPEQVQPQQFLPAPSQAPAQP 230
Query: 707 SGPSQMSGQQSSGPAQMLGQQSLGPNQMERQQPQGSYQKWGQQAFGSNQMGGQQPSGYNR 766
P Q+ Q S Q PQ Q QA Q G
Sbjct: 231 PLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLP- 289
Query: 767 MGEQQHFGWQQMSGHQPNKIAQWTGQPPSAPSQTAGQQQSWQPQTSAQQQSWSQAAEQPP 826
Q QP P Q Q PQ Q SQ +
Sbjct: 290 ---QGQNAPLPPPQ-----------QPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREAL 335
Query: 827 VGSPQEDQN 835
+
Sbjct: 336 SQEEAKRAK 344
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 3e-09
Identities = 63/272 (23%), Positives = 109/272 (40%), Gaps = 24/272 (8%)
Query: 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR 240
LI+ Y G +++ VF + E V +S + G+ G EA+ L +M
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNS-----MLAGYALHGYSEEALCLYYEMRDS 319
Query: 241 QLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEA 300
+ D ++ +I F L LE A + L + D V N ++ + G+ ++A
Sbjct: 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379
Query: 301 MQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFN 360
+ + +N + N L+ H + +A +FE+M+ P N TF
Sbjct: 380 RNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-----NHVTFL 430
Query: 361 IMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLRE 420
+++ C G + E F+ + + KP AM Y +I +L+EA ++R
Sbjct: 431 AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH---YACMIELLGREGLLDEAYAMIRR 487
Query: 421 ISTKSLSPDVTTFRTLIDAYLKVERIDDALEL 452
P V + L+ A RI LEL
Sbjct: 488 ---APFKPTVNMWAALLTA----CRIHKNLEL 512
|
Length = 697 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 6e-09
Identities = 54/292 (18%), Positives = 75/292 (25%), Gaps = 22/292 (7%)
Query: 576 GPPQM-TGQQYSGYNRMAREQQFGSNQMAGQQSLGPNQMEGQQHFGSYQRMGQQSFGPNQ 634
G Q Q N+ ++ Q +G Q + GQ Q
Sbjct: 218 GQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQ 277
Query: 635 MAGQQHFTSNQMMGQQSFRPTQMSGYQQFGSNQMMGQQSFGPNKMAGEQPFSPFQRMGQQ 694
QQ +Q+ G + QM G Q G Q MG P + M
Sbjct: 278 QPPQQQPQQSQL-GMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQGGQAVQQGVMSAG 336
Query: 695 SSGPSQMSG----QQSSGPSQMSGQQSSGPAQMLGQQSLGPNQMERQQPQGSYQKWGQQA 750
QM Q Q Q + PA Q + Q + G G Q
Sbjct: 337 QQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQMVALGYLNIQGNQG 396
Query: 751 F-GSNQMGG--------------QQPSGYNRMGEQQHFGWQQMSGHQPNKIAQWTGQPPS 795
G+N M Q + Q G QP + P
Sbjct: 397 GLGANPMQQGQPGMMSSPSPVPQVQTNQSMPQPPQPSVPSPGGPGSQPPQSVSGGMIPSP 456
Query: 796 APSQTAGQQQSWQPQTSAQQQSWSQAAEQPPVGSPQEDQNPSGPPEWQENHQ 847
+ Q Q S + + P+ +P + S P QE
Sbjct: 457 PALMPSPSPQMSQSPASQRTIQQDMVSPGGPLNTPGQSSVNS-PANPQEEQL 507
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 6e-09
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 137 PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCD 187
P V T N +I + + ++A+ LF + I PN+ +Y+ LI+ C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 8e-09
Identities = 61/230 (26%), Positives = 73/230 (31%), Gaps = 17/230 (7%)
Query: 623 QRMGQQSFGPNQMAGQQHFTSNQMMGQQSFRPTQMSGYQQFGSNQMMGQQSFGPNKMAGE 682
Q + P+ + Q+ T Q R QM G + MGQQ GP +
Sbjct: 61 QVLQGGQGMPDPINALQNLTG------QGTRGPQMGPMGP-GPGRPMGQQMGGPGTASNL 113
Query: 683 Q---PFSPFQRMGQQSSGPSQMSGQQSSGPSQMSGQQSSGPAQ--MLGQQSLGPNQMERQ 737
MG GP QMS + P G Q+ G Q QS PNQM Q
Sbjct: 114 LQSLNVRGQMPMGAAGMGPHQMSRVGTMQP----GGQAGGMMQQSSGQPQSQQPNQMGPQ 169
Query: 738 QPQGSYQKWGQQAFGSNQMGGQQPSGYNRMGEQQHFGWQQMSGHQPNKIAQWTGQPPSAP 797
Q Q Q G +G QQP + G G QM Q
Sbjct: 170 QGQAQGQAGGMNQGQQGPVGQQQPPQMGQPGMPGGGGQGQMQQQGQPGGQQQQNPQMQQQ 229
Query: 798 SQTAGQQQSWQPQTSAQQQSWSQAAEQPPVGSPQEDQNPSGPPEWQENHQ 847
Q QQQ Q Q A Q+ Q G Q Q G + Q
Sbjct: 230 LQNQQQQQMDQQQGPADAQAQMGQQ-QQGQGGMQPQQMQGGQMQVPMQQQ 278
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 5e-08
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 428 PDVTTFRTLIDAYLKVERIDDALELFNRMVESGLR 462
PDV T+ TLID Y K ++++AL+LFN M + G++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIK 35
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 7e-08
Identities = 61/251 (24%), Positives = 82/251 (32%), Gaps = 33/251 (13%)
Query: 602 MAGQQSLGPNQMEGQQHFGSYQRMGQQSFGPNQMAGQQHFTSNQMMGQQSFRPTQMSGYQ 661
+ GQ + GP G + MGQQ GP + ++ + R G
Sbjct: 79 LTGQGTRGPQMG--PMGPGPGRPMGQQMGGPGTAS--------NLLQSLNVRGQMPMGAA 128
Query: 662 QFGSNQMMGQQSFGPNKMAGEQPFSPFQRMGQQSSGPSQ--MSGQQSSGPSQMSGQQSSG 719
G +QM + P G Q+ G Q QS P+QM QQ
Sbjct: 129 GMGPHQMSRVGTMQP---------------GGQAGGMMQQSSGQPQSQQPNQMGPQQGQA 173
Query: 720 PAQMLGQQSLGPNQMERQQPQGSYQKWGQQAFGSNQMGGQQPSGYNRMGEQQHFGWQQMS 779
Q G + +QQP Q G QM Q G + Q QQ
Sbjct: 174 QGQAGGMNQGQQGPVGQQQPPQMGQPGMPGGGGQGQMQQQGQPGGQQQQNPQM---QQQL 230
Query: 780 GHQPNKIAQWTGQPPSAPSQTAGQQQSW---QPQTSAQQQSWSQAAEQPPVGSPQEDQNP 836
+Q + P A +Q QQQ QPQ Q +QPP PQ+ Q
Sbjct: 231 QNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLG 290
Query: 837 SGPPEWQENHQ 847
P + Q+
Sbjct: 291 MLPNQMQQMPG 301
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-07
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 318 TCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK 368
T NTL++ K K EEA LF +M PN+ T++I+++ K
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVY-----TYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.3 bits (114), Expect = 2e-07
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 424 KSLSPDVTTFRTLIDAYLKVERIDDALELFNRMV 457
K L PDV T+ TLID + R+D+A+EL + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 3e-07
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 173 PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGF 221
P++V+YN LI+ YC +GKV+E + +F + + + P+ TY L G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 3e-07
Identities = 101/551 (18%), Positives = 192/551 (34%), Gaps = 101/551 (18%)
Query: 29 LALNPNSPNPNLNPISARGYAFSSAEEAAAERRRRKR---RLR---IEP---PLHAIRPN 79
LA + + + S + + RR K + +E P ++P
Sbjct: 5 LARYQSIRLDEIRDSLSNPRLLHSPRKFSLRGRRTKTPFSSISCSSVEQGLKPRPRLKPE 64
Query: 80 PTQPPPRDPNAPRLPDTTSALVGPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPT- 138
P + + RL DT G L ++++ L+ G A L
Sbjct: 65 PIRIEVSESKDARLDDTQIRKSGVSLC--SQIEKLVACGRHREALELFEIL---EAGCPF 119
Query: 139 ---VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGM 195
T +A++ A K A++ + + + P+ N ++ + G + +
Sbjct: 120 TLPASTYDALVEACIALKSIRCVKAVY-WHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178
Query: 196 NVFRRIIETAPVGPSSN--TYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253
+F + P N ++ + G VDAG EA L R+M A+ + ++
Sbjct: 179 RLFDEM-------PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231
Query: 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATF-----MEWWFNQGKDKEAMQSYKSLM 308
LG+ +L C++ GVV TF ++ + G ++A + +
Sbjct: 232 RASAGLGSARAGQQL-----HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286
Query: 309 ERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK 368
E+ T N++L H EEA L+ +M D+ +++ TF+IM+ +
Sbjct: 287 EK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV-----SIDQFTFSIMIRIFSR 337
Query: 369 HGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSP 428
LE A++ +
Sbjct: 338 LAL---------------------------------------LEHAKQAHAGLIRTGFPL 358
Query: 429 DVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELIT----KGKVAEC 484
D+ L+D Y K R++DA +F+RM + ++S +N LI G+ +
Sbjct: 359 DIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLIS-----WNALIAGYGNHGRGTKA 410
Query: 485 APILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDF--VR 542
+ +M + P+ + + V+ GL + +I Q M I P + +
Sbjct: 411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF-QSMSENHRIKPRAMHYACMI 469
Query: 543 ETFGKAGRGEE 553
E G+ G +E
Sbjct: 470 ELLGREGLLDE 480
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 4e-07
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 170 DIVPNIVSYNNLINTYCDEGKVDEGMNVFRR 200
+ P++V+YN LI+ C G+VDE + +
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.2 bits (123), Expect = 5e-07
Identities = 45/205 (21%), Positives = 73/205 (35%), Gaps = 9/205 (4%)
Query: 256 FLNLGNLEKANELFDE-LKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRM 314
LG L +A EL +E L+ + G+ +EA++ + +E
Sbjct: 33 LELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLP 92
Query: 315 TPATC-NTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFS 373
A L +L K EEA L E+ L P A + G +
Sbjct: 93 NLAEALLNLGLLLEALGKYEEALELLEKALA-LDPDPDLAEALLALGALYEL----GDYE 147
Query: 374 EAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTF 433
EA+E ++KA + A EEA +LL + + D
Sbjct: 148 EALELYEKA--LELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEAL 205
Query: 434 RTLIDAYLKVERIDDALELFNRMVE 458
L YLK+ + ++ALE + + +E
Sbjct: 206 LNLGLLYLKLGKYEEALEYYEKALE 230
|
Length = 291 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 6e-07
Identities = 120/519 (23%), Positives = 205/519 (39%), Gaps = 108/519 (20%)
Query: 116 RAGDLDAASYLARQAVFSRIRPTVFT-------CNAIIA-AMYR-----AKRYD-----D 157
+AG D A L + +++ +RP V+T C I A R R+ D
Sbjct: 164 KAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD 223
Query: 158 AV-ALFKYFFDQADIVP-----------NIVSYNNLINTYCDEGKVDEGMNVFRRIIETA 205
V AL + D+V + +S+N +I+ Y + G+ EG+ +F + E +
Sbjct: 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283
Query: 206 PVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDM----LSRQLGADSLVYNNLISGFLNLGN 261
V P T +T +G+ L R+M + D V N+LI +L+LG+
Sbjct: 284 -VDPDLMT---ITSVISACELLGD-ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338
Query: 262 LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTP----- 316
+A ++F ++ + D V + + G +A+++Y LME++ ++P
Sbjct: 339 WGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYA-LMEQD-NVSPDEITI 392
Query: 317 ----ATCNTL--LEVLLK-HEKKEE---------AQALFE-----QMLDN-----HQPPN 350
+ C L L+V +K HE E A AL E + +D H P
Sbjct: 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452
Query: 351 IQAVNSDTFNIMVNECFKHGKFSEAIETFK--KAGTHPKSKPFAMDVAGYNNIIARYCEN 408
++ + I+ + F EA+ F+ P S ++ I A C
Sbjct: 453 KDVISWTS--IIAGLRLNNRCF-EALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGK 509
Query: 409 EMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFG 468
E+ A L I P+ L+D Y++ R++ A FN S + VVS
Sbjct: 510 EI--HAHVLRTGIGFDGFLPN-----ALLDLYVRCGRMNYAWNQFN----SHEKDVVS-- 556
Query: 469 TKVFNELIT----KGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVD 524
+N L+T GK + + +M E PD + + + LC M ++
Sbjct: 557 ---WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF---ISLLCACSRSGMVTQGLE 610
Query: 525 --QMMKYGVGITPALQDF--VRETFGKAGRGEEIERVLN 559
M+ ITP L+ + V + G+AG+ E +N
Sbjct: 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649
|
Length = 857 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 6e-07
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 364 NECFKHGKFSEAIETFKKAGTH-PKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREIS 422
N +K G + EA+E ++KA P + Y N+ A Y + EEA + +
Sbjct: 8 NLYYKLGDYDEALEYYEKALELDPDNADA------YYNLAAAYYKLGKYEEALEDYEKA- 60
Query: 423 TKSLSPD-VTTFRTLIDAYLKVERIDDALELFNR 455
L PD + L AY K+ + ++ALE + +
Sbjct: 61 -LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEK 93
|
Length = 100 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 3e-06
Identities = 33/227 (14%), Positives = 47/227 (20%), Gaps = 14/227 (6%)
Query: 633 NQMAGQQHFTSNQMMGQQSFRPTQMSGYQQFGSNQMMGQQSFGPNKMA------GEQPFS 686
+ Q+ +G S + S + S + G P
Sbjct: 73 AAVRYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKP 132
Query: 687 PFQRMGQQSSGPSQMSGQQSSGPSQMSGQQSSGPAQMLGQQSLGPNQMERQQPQGSYQKW 746
Q S P + Q + Q Q + + P
Sbjct: 133 EPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFP 192
Query: 747 GQQAFGSNQMGGQQPSGYNRMGEQQHFGWQQMSGHQPNKIAQWTGQPPSAPSQT--AGQQ 804
Q Q P G+ + QQ AQ PP P Q Q
Sbjct: 193 QQGPPEQPPGYPQPPQGH-----PEQVQPQQFLPAPSQAPAQPP-LPPQLPQQPPPLQQP 246
Query: 805 QSWQPQTSAQQQSWSQAAEQPPVGSPQEDQNPSGPPEWQENHQRAAA 851
Q +Q PQ P P +
Sbjct: 247 QFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQN 293
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 5e-06
Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 45/210 (21%)
Query: 369 HGKFSEAIETFKKAGTHPKSKPFAM-----DVAGYNNIIARYCENEMLEEAEKLLREIST 423
H KF +A KK ++ FA ++ +N +++ ++ ++ A ++LR +
Sbjct: 409 HAKFFKAC---KKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQE 465
Query: 424 KSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGL------------------RVVV 465
L D + TLI K ++D E+F+ MV +G+ +V
Sbjct: 466 AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525
Query: 466 SFGTK-------------VFNELIT----KGKVAECAPILTKMG-EKDP-KPDFLIYDVV 506
+FG VFN LI+ G V +L +M E P PD + +
Sbjct: 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585
Query: 507 VRGLCNEGLFDMSKDIVDQMMKYGVGITPA 536
++ N G D +K++ + +Y + TP
Sbjct: 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPE 615
|
Length = 1060 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 5e-06
Identities = 42/267 (15%), Positives = 68/267 (25%), Gaps = 19/267 (7%)
Query: 588 YNRMAREQQFGSNQMAGQQSLGPNQMEGQQHFGSYQRMGQQSFGPNQMAGQQHFTSNQMM 647
+ +Q S + E + + G Q
Sbjct: 82 PGAPSVGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPS----LWGTAPKPEPQPP 137
Query: 648 GQQSFRPTQMSGYQQFGSNQMMGQQSFGPNKMAGEQPFSPFQRMGQQSSGPSQMSGQQSS 707
+P + Q+ S + + Q ++ +P Q P M +Q++
Sbjct: 138 QAPESQPQPQTPAQKMLSLEEVEAQ-------LQQRQQAPQLPQPPQQVLPQGMPPRQAA 190
Query: 708 GPSQMSGQQSSGPAQMLGQQSLGPNQMERQQ-PQGSYQKWGQQAFGSNQMGGQQP--SGY 764
P Q +Q P P Q++ QQ Q Q P
Sbjct: 191 FPQQGPPEQ---PPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQ 247
Query: 765 NRMGEQQHFGWQQMSGHQPNKIAQWTGQPP--SAPSQTAGQQQSWQPQTSAQQQSWSQAA 822
QQ Q + Q QPP + P+ G Q QQ
Sbjct: 248 FPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPL 307
Query: 823 EQPPVGSPQEDQNPSGPPEWQENHQRA 849
Q P G + Q + + + A
Sbjct: 308 VQQPQGQQRGPQFREQLVQLSQQQREA 334
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 7e-06
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 432 TFRTLIDAYLKVERIDDALELFNRMVESGL 461
T+ +LI Y K ++++ALELF M E G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 8e-06
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 432 TFRTLIDAYLKVERIDDALELFNRMVESGLRV 463
T+ TLID K R+++ALELF M E G+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-05
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 245 DSLVYNNLISGFLNLGNLEKANELFDELKQR 275
D + YN LI G+ G +E+A +LF+E+K+R
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKR 32
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.1 bits (110), Expect = 2e-05
Identities = 31/166 (18%), Positives = 57/166 (34%), Gaps = 7/166 (4%)
Query: 294 QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQA 353
A+ + + A L +L + EA L E+ L+ +
Sbjct: 1 LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSD--- 57
Query: 354 VNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEE 413
+ ++ K G+ EA+E +KA A N+ EE
Sbjct: 58 -LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEA---LLNLGLLLEALGKYEE 113
Query: 414 AEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVES 459
A +LL + PD+ + A ++ ++ALEL+ + +E
Sbjct: 114 ALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL 159
|
Length = 291 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 81/410 (19%), Positives = 169/410 (41%), Gaps = 54/410 (13%)
Query: 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL--TKGFVDAGRIGEAV 231
++ S+N L+ Y G DE + ++ R++ A V P T+ + T G + G V
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREV 209
Query: 232 DLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQR-CLVYDGVVNATF--- 287
++ D V N LI+ ++ G++ A +FD + +R C+ ++ +++ F
Sbjct: 210 HA--HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENG 267
Query: 288 -----MEWWFNQ----------------------GKDKEAMQSYKSLMERNFRMTPATCN 320
+E +F G ++ + + +++ F + + CN
Sbjct: 268 ECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327
Query: 321 TLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFK 380
+L+++ L EA+ +F +M + ++ ++ M++ K+G +A+ET+
Sbjct: 328 SLIQMYLSLGSWGEAEKVFSRM---------ETKDAVSWTAMISGYEKNGLPDKALETYA 378
Query: 381 KAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAY 440
P + +A ++++ L+ KL K L V LI+ Y
Sbjct: 379 LMEQD-NVSPDEITIA---SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434
Query: 441 LKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDF 500
K + ID ALE+F+ + E + V+S+ T + L + E +M KP+
Sbjct: 435 SKCKCIDKALEVFHNIPE---KDVISW-TSIIAGLRLNNRCFEALIFFRQM-LLTLKPNS 489
Query: 501 LIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGR 550
+ + G K+I +++ G+G L + + + + + GR
Sbjct: 490 VTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 3e-05
Identities = 69/347 (19%), Positives = 135/347 (38%), Gaps = 46/347 (13%)
Query: 116 RAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNI 175
++G +DA + + V + + V T A+I RA + A + + ++ P+
Sbjct: 484 KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPDR 542
Query: 176 VSYNNLINTYCDEGKVDEGMNVFRRI-IETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLL 234
V +N LI+ G VD +V + ET P+ P T L K +AG++ A ++
Sbjct: 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602
Query: 235 RDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQ 294
+ + + VY ++ G+ + A ++D++K+ GV
Sbjct: 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-----KGV------------ 645
Query: 295 GKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAV 354
K E S L++V ++A + + +
Sbjct: 646 -KPDEVFFS-----------------ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687
Query: 355 NSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEA 414
+S ++ C + +A+E ++ KS V+ N +I CE L +A
Sbjct: 688 SS-----LMGACSNAKNWKKALELYEDI----KSIKLRPTVSTMNALITALCEGNQLPKA 738
Query: 415 EKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGL 461
++L E+ L P+ T+ L+ A + + D L+L ++ E G+
Sbjct: 739 LEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785
|
Length = 1060 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-05
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 322 LLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKK 381
L + K +EA +E+ L+ P+ N+D + + +K GK+ EA+E ++K
Sbjct: 6 LGNLYYKLGDYDEALEYYEKALELD--PD----NADAYYNLAAAYYKLGKYEEALEDYEK 59
Query: 382 AGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLRE 420
A A Y N+ Y + EEA + +
Sbjct: 60 ALELDPDNAKA-----YYNLGLAYYKLGKYEEALEAYEK 93
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (103), Expect = 1e-04
Identities = 30/169 (17%), Positives = 65/169 (38%), Gaps = 3/169 (1%)
Query: 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFF 166
L N L G + A L +A+ P + + A+Y Y++A+ L++
Sbjct: 98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKAL 157
Query: 167 DQADIVPNIV-SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG 225
+ + + + L G+ +E + + + ++ P + +L ++ G
Sbjct: 158 ELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNP-DDDAEALLNLGLLYLKLG 216
Query: 226 RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQ 274
+ EA++ L ++ NL L LG E+A E ++ +
Sbjct: 217 KYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264
|
Length = 291 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 64/309 (20%), Positives = 124/309 (40%), Gaps = 31/309 (10%)
Query: 135 IRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEG 194
+ P T ++++A D V L + ++ ++ +V N LI Y +D+
Sbjct: 385 VSPDEITIASVLSACACLGDLDVGVKLHE-LAERKGLISYVVVANALIEMYSKCKCIDKA 443
Query: 195 MNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLIS 254
+ VF I E + +S + G R EA+ R ML L +S+ +S
Sbjct: 444 LEVFHNIPEKDVISWTS-----IIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALS 497
Query: 255 GFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRM 314
+G L E+ + + + +DG + ++ + G+ A + + E++
Sbjct: 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEKDV-- 554
Query: 315 TPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSE 374
+ N LL + H K A LF +M+++ P + TF ++ C + G ++
Sbjct: 555 --VSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-----DEVTFISLLCACSRSGMVTQ 607
Query: 375 AIETFK----KAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDV 430
+E F K P K +A V +++ R + L EA + ++ PD
Sbjct: 608 GLEYFHSMEEKYSITPNLKHYACVV----DLLGRAGK---LTEAYNFINKMPIT---PDP 657
Query: 431 TTFRTLIDA 439
+ L++A
Sbjct: 658 AVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 45/180 (25%), Positives = 76/180 (42%), Gaps = 35/180 (19%)
Query: 406 CENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRV-- 463
C + LE+A KLL + + D DAY+ + R+ + + R VE G RV
Sbjct: 62 CSHGQLEQALKLLESMQELRVPVDE-------DAYVALFRLCE----WKRAVEEGSRVCS 110
Query: 464 -----VVSFGTKVFNELITK----GKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEG 514
S G ++ N +++ G++ + KM E+D ++V+V G G
Sbjct: 111 RALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERD----LFSWNVLVGGYAKAG 166
Query: 515 LFDMSKDIVDQMMKYGVGITPALQDF--VRETFGKA---GRGEEIERVLNADRWGYAAPV 569
FD + + +M+ G+ P + F V T G RG E+ + R+G+ V
Sbjct: 167 YFDEALCLYHRML--WAGVRPDVYTFPCVLRTCGGIPDLARGREVH--AHVVRFGFELDV 222
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 176 VSYNNLINTYCDEGKVDEGMNVFRRIIE 203
V+YN+LI+ YC GK++E + +F+ + E
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 248 VYNNLISGFLNLGNLEKANELFDELKQR 275
YN+LISG+ G LE+A ELF E+K++
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 27/166 (16%), Positives = 39/166 (23%), Gaps = 23/166 (13%)
Query: 590 RMAREQQFGSNQMAGQQSLGPNQMEGQQHFGSYQRMGQQSFGPNQMAGQQHFTSNQMMGQ 649
R + QF Q +Q + M G MGQ + QQ F +
Sbjct: 368 RAHLQDQFMQLQPRMRQLPMGSPMGGA--------MGQPPYY--GQGPQQQFNGQPLGWP 417
Query: 650 QSFRPTQMSGYQQFGSNQMMGQQS----FGPNKMAGEQPFSPFQRMGQQSSGPSQMSGQQ 705
+ + G P + + P
Sbjct: 418 RM---------SMMPTPMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNY 468
Query: 706 SSGPSQMSGQQSSGPAQMLGQQSLGPNQMERQQPQGSYQKWGQQAF 751
S P Q A GQ + PQ Q G++ F
Sbjct: 469 QSLPLSQDLPQPQSTASQGGQNKKLAQVLASATPQMQKQVLGERLF 514
|
These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562 |
| >gnl|CDD|111993 pfam03157, Glutenin_hmw, High molecular weight glutenin subunit | Back alignment and domain information |
|---|
Score = 44.7 bits (104), Expect = 2e-04
Identities = 76/294 (25%), Positives = 92/294 (31%), Gaps = 16/294 (5%)
Query: 565 YAAPVPPPRTSGPPQMTGQQYSGYNRMAREQQFGSNQMAGQQSLGPNQMEGQQHFGSYQR 624
Y A P P Q G +Q Q Q GQ G Y
Sbjct: 245 YLASPQQPGQGQQPGQLQQPAQGQQPEQGQQGQQPAQGQQGHQPAQGQQPGQGQPGHYPA 304
Query: 625 MGQQSFGPNQMAGQQHFTSNQMMGQQSFRPTQMSGYQQFGSNQMMGQQSFGPNKMAGEQ- 683
QQ H+ ++ QS P Q QQ G Q + G G+
Sbjct: 305 SPQQP----GQGQPGHYPASSQQPTQSQEPGQGQQGQQVGQGQQAQIPAQGQQPGQGQPG 360
Query: 684 --PFSPFQRMGQQSSGPSQMSGQQSSGPSQMSGQQSSGPAQMLGQQSLGPNQMERQQPQG 741
P SP Q+ G G S QQ Q+ Q S P Q Q G + QQ Q
Sbjct: 361 HYPASPLQQ-GPGQPGHYLTSLQQLGQGQQIGQLQQSAPGQKGQQPGQGQQPGQGQQGQQ 419
Query: 742 SYQKWGQQAFGSNQMGGQQPSGYNRMGEQQHFGWQQMSGHQPNKIAQWTGQP-------- 793
Q +Q G Q G S QQ WQQ QP QP
Sbjct: 420 PGQGEQEQQPGQGQPGYYPTSLQQPGQGQQPGQWQQPGQGQPGYYPTSLLQPGQGQPGHD 479
Query: 794 PSAPSQTAGQQQSWQPQTSAQQQSWSQAAEQPPVGSPQEDQNPSGPPEWQENHQ 847
P++ Q QQ Q Q AQ Q Q A+ P + Q P + Q+ Q
Sbjct: 480 PASLQQPGQGQQPGQLQQPAQGQPGQQLAQGQQGQQPAQVQQGQQPAQGQQGQQ 533
|
Members of this family include high molecular weight subunits of glutenin. This group of gluten proteins is thought to be largely responsible for the elastic properties of gluten, and hence, doughs. Indeed, glutenin high molecular weight subunits are classified as elastomeric proteins, because the glutenin network can withstand significant deformations without breaking, and return to the original conformation when the stress is removed. Elastomeric proteins differ considerably in amino acid sequence, but they are all polymers whose subunits consist of elastomeric domains, composed of repeated motifs, and non-elastic domains that mediate cross-linking between the subunits. The elastomeric domain motifs are all rich in glycine residues in addition to other hydrophobic residues. High molecular weight glutenin subunits have an extensive central elastomeric domain, flanked by two terminal non-elastic domains that form disulphide cross-links. The central elastomeric domain is characterized by the following three repeated motifs: PGQGQQ, GYYPTS[P/L]QQ, GQQ. It possesses overlapping beta-turns within and between the repeated motifs, and assumes a regular helical secondary structure with a diameter of approx. 1.9 nm and a pitch of approx. 1.5 nm. Length = 779 |
| >gnl|CDD|111993 pfam03157, Glutenin_hmw, High molecular weight glutenin subunit | Back alignment and domain information |
|---|
Score = 44.7 bits (104), Expect = 2e-04
Identities = 64/278 (23%), Positives = 83/278 (29%), Gaps = 20/278 (7%)
Query: 582 GQQYSGYNRMAREQQFGSNQMAGQ----QSLGPNQMEGQQHFGSYQRMGQQSFGPNQMA- 636
GQQ + + QQ Q GQ Q G Q GQ G GQQ + P Q+
Sbjct: 162 GQQGQQIGQGQQGQQPEQGQQPGQGQQGQQPGQGQQPGQGQQGQQLGQGQQGYYPGQLQQ 221
Query: 637 ---GQQHFTSNQMM----GQQSFRPTQMSGYQQFGSNQMMGQQSFGPNKMAGEQPFSPFQ 689
GQ + GQQ Q + Q + G G+Q P Q
Sbjct: 222 SGQGQPGHYPTSLQQLGQGQQGHYLASPQQPGQGQQPGQLQQPAQGQQPEQGQQGQQPAQ 281
Query: 690 RMGQQSSGPSQMSGQQSSGPSQMSGQQSSGPAQMLGQQSLGPNQMERQQPQGSYQKWGQQ 749
Q GQ G S QQ S ++ QG + Q
Sbjct: 282 GQQGHQPAQGQQPGQGQPGHYPASPQQPGQGQPGHYPASSQQPTQSQEPGQGQQGQQVGQ 341
Query: 750 AFGSNQMGGQQPSGYNRMGEQQHFGWQQMSGHQPNKIAQWTGQPPSAPSQTAGQQQSWQP 809
+ Q G + G QQ G G ++ Q QQ Q
Sbjct: 342 GQQAQIPAQGQQPGQGQPGHYPASPLQQGPGQP--------GHYLTSLQQLGQGQQIGQL 393
Query: 810 QTSAQQQSWSQAAEQPPVGSPQEDQNPSGPPEWQENHQ 847
Q SA Q Q + G Q+ Q P + Q+ Q
Sbjct: 394 QQSAPGQKGQQPGQGQQPGQGQQGQQPGQGEQEQQPGQ 431
|
Members of this family include high molecular weight subunits of glutenin. This group of gluten proteins is thought to be largely responsible for the elastic properties of gluten, and hence, doughs. Indeed, glutenin high molecular weight subunits are classified as elastomeric proteins, because the glutenin network can withstand significant deformations without breaking, and return to the original conformation when the stress is removed. Elastomeric proteins differ considerably in amino acid sequence, but they are all polymers whose subunits consist of elastomeric domains, composed of repeated motifs, and non-elastic domains that mediate cross-linking between the subunits. The elastomeric domain motifs are all rich in glycine residues in addition to other hydrophobic residues. High molecular weight glutenin subunits have an extensive central elastomeric domain, flanked by two terminal non-elastic domains that form disulphide cross-links. The central elastomeric domain is characterized by the following three repeated motifs: PGQGQQ, GYYPTS[P/L]QQ, GQQ. It possesses overlapping beta-turns within and between the repeated motifs, and assumes a regular helical secondary structure with a diameter of approx. 1.9 nm and a pitch of approx. 1.5 nm. Length = 779 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 3e-04
Identities = 52/245 (21%), Positives = 76/245 (31%), Gaps = 34/245 (13%)
Query: 590 RMAREQ--QFGSNQMAGQQSLGPNQMEGQQHFGSYQRMGQQSFGPNQMAGQQHFTSNQMM 647
R A E+ + NQ ++++ Q ++ Q Q G+Q+ +
Sbjct: 631 RAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQ---QQRYGEQYQHDVPVN 687
Query: 648 GQQSFRPTQMSGYQQFGSNQMMGQQSFGPNKMAGEQPFSPFQRMGQQSSGPSQMSGQQSS 707
+ + + +QF Q QQ + + AG PFS
Sbjct: 688 AEDADAAAEAELARQFAQTQ---QQRYSGEQPAGANPFS-----------------LDDF 727
Query: 708 GPSQMSGQQSSGPAQMLGQQSLGPNQMERQQPQGSYQKWGQQAFGSNQMGGQQPSGYNRM 767
S M GP + L + P Q +Q Q Q + Q QQP
Sbjct: 728 EFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQP------ 781
Query: 768 GEQQHFGWQQMSGHQPNKIAQWTGQPPSAPSQTAGQQQSWQPQTSAQQQSWSQAAEQPPV 827
QQ Q QP + Q A Q Q QPQ Q Q +QP
Sbjct: 782 --QQPVAPQPQY-QQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVA 838
Query: 828 GSPQE 832
PQ+
Sbjct: 839 PQPQD 843
|
Length = 1355 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-04
Identities = 41/189 (21%), Positives = 57/189 (30%), Gaps = 39/189 (20%)
Query: 600 NQMAGQQSLGPNQMEGQQHFGSYQRMGQQSFGPNQM--------------AGQQHFTS-N 644
Q+A Q P Q + G+ + QQ +M QQ
Sbjct: 510 RQLAEQAQRNPQQGDQPPDQGNSMELTQQDL--QRMMDRIEELMESGRRAEAQQLLEQLQ 567
Query: 645 QMMGQQSFRPTQMSGYQQFGSNQMM--------GQQ-----SFGPNKMAGEQPFSPFQRM 691
QMM ++ + TQ Q Q M QQ +F + EQ F
Sbjct: 568 QMM--ENLQVTQGGQGGQSEMQQAMEGLGETLREQQGLSDETF---RDLQEQ----FNAQ 618
Query: 692 GQQSSGPSQMSGQQSSGPSQMSGQQSSGPAQMLGQQSLGPNQMERQQPQGSYQKWGQQAF 751
+ G GQ P Q Q GQ G ++ Q + G+Q
Sbjct: 619 RGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRG 678
Query: 752 GSNQMGGQQ 760
G MGG+
Sbjct: 679 GLPGMGGEA 687
|
Length = 820 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 6e-04
Identities = 55/274 (20%), Positives = 104/274 (37%), Gaps = 26/274 (9%)
Query: 118 GDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVS 177
GDLD L A + V NA+I + K D A+ +F ++ +++S
Sbjct: 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-----DVIS 457
Query: 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAV---DLL 234
+ ++I + E + FR+++ T + P+S T L RIG + ++
Sbjct: 458 WTSIIAGLRLNNRCFEALIFFRQMLLT--LKPNSVT---LIAALSACARIGALMCGKEIH 512
Query: 235 RDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQ 294
+L +G D + N L+ ++ G + A Q VV+ + +
Sbjct: 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYA------WNQFNSHEKDVVSWNILLTGYVA 566
Query: 295 -GKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN-HQPPNIQ 352
GK A++ + ++E T +LL + + F M + PN++
Sbjct: 567 HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626
Query: 353 AVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHP 386
+ +V+ + GK +EA K P
Sbjct: 627 H-----YACVVDLLGRAGKLTEAYNFINKMPITP 655
|
Length = 857 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 6e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 430 VTTFRTLIDAYLKVERIDDALELFNRMVESGLR 462
+ T+ L+ A K D AL + M SGL+
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 8e-04
Identities = 29/142 (20%), Positives = 38/142 (26%), Gaps = 26/142 (18%)
Query: 693 QQSSGPSQMSGQQSSGPSQMSGQQSSGPAQMLGQQSLGPNQMERQQPQGSYQKWGQQAFG 752
Q Q +Q S M G Q GP Q QP G + +
Sbjct: 372 QDQFMQLQPRMRQLPMGSPMGGAMG---QPPYYGQ--GPQQQFNGQPLG-WPRMSMMPTP 425
Query: 753 SNQMGGQQPSGYNRMGEQQHFGWQQ--------------MSGHQPNKIAQWTGQPPSAPS 798
G +P+G M + +Q ++Q QP S S
Sbjct: 426 MGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTAS 485
Query: 799 Q------TAGQQQSWQPQTSAQ 814
Q A S PQ Q
Sbjct: 486 QGGQNKKLAQVLASATPQMQKQ 507
|
These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 45/209 (21%), Positives = 86/209 (41%), Gaps = 27/209 (12%)
Query: 118 GDLDAASYLARQAVFSRI-RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIV 176
G ++ A VF R+ R + + NA+IA R AV +F+ + PN V
Sbjct: 374 GRMEDARN-----VFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI-AEGVAPNHV 427
Query: 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRD 236
++ +++ G ++G +F+ + E + P + Y + + G + EA ++R
Sbjct: 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487
Query: 237 --------MLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFM 288
M + L A ++ N L LG L A +L+ ++ Y +
Sbjct: 488 APFKPTVNMWAALLTA-CRIHKN-----LELGRL-AAEKLYGMGPEKLNNY-----VVLL 535
Query: 289 EWWFNQGKDKEAMQSYKSLMERNFRMTPA 317
+ + G+ EA + ++L + M PA
Sbjct: 536 NLYNSSGRQAEAAKVVETLKRKGLSMHPA 564
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 398 YNNIIARYCENEMLEEAEKLLREISTKSLSPDV 430
YN +I C+ +EEA +L +E+ + + PDV
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKG--FVDAGRIGEAVDLLR 235
NL N Y G DE + + + +E P N + + G+ EA++
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDP----DNADAYYNLAAAYYKLGKYEEALEDYE 58
Query: 236 DMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRC 276
++ Y NL + LG E+A E +++ +
Sbjct: 59 -KALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98
|
Length = 100 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 248 VYNNLISGFLNLGNLEKANELFDELKQRCLVYD 280
YN LI G G +E+A ELF E+K+R + D
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 176 VSYNNLINTYCDEGKVDEGMNVFRRIIE 203
V+YN LI+ C G+V+E + +F+ + E
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKE 28
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|111993 pfam03157, Glutenin_hmw, High molecular weight glutenin subunit | Back alignment and domain information |
|---|
Score = 41.6 bits (96), Expect = 0.002
Identities = 66/264 (25%), Positives = 77/264 (29%), Gaps = 12/264 (4%)
Query: 578 PQMTGQQYSGYNRMAREQQFGSNQMAGQQSLGPNQMEGQQHFGSYQRMGQQSFGPNQMAG 637
GQ G++ A QQ G Q GQ GQQ Q Q
Sbjct: 468 LLQPGQGQPGHDP-ASLQQPGQGQQPGQLQQPAQGQPGQQLAQGQQGQQPAQVQQGQQPA 526
Query: 638 QQHFTSNQMMGQQSFRPTQMSGYQQFGSNQMMGQQSFGPNKMAGEQ---------PFSPF 688
Q GQQ +P Q Q Q GQ G G+Q P SP
Sbjct: 527 QGQQGQQLGQGQQGQQPGQGQHPAQGEQGQQPGQGQQGQQPGQGQQPGQGQPWYYPTSPQ 586
Query: 689 QRMGQQSSGPSQMSGQQSSGPSQMSGQQSSGPAQMLGQQSLGPNQMERQQPQGSYQKWGQ 748
+ Q G Q GQ G + P Q LGQ G QQP G Q+ GQ
Sbjct: 587 ESGQGQQPGQWQQPGQWQQPGQGQPGYYLTSPLQ-LGQGQQGYYPTSLQQP-GQGQQPGQ 644
Query: 749 QAFGSNQMGGQQPSGYNRMGEQQHFGWQQMSGHQPNKIAQWTGQPPSAPSQTAGQQQSWQ 808
G P G+ Q G Q G G P++ Q QQ Q
Sbjct: 645 WQQSGQGQHGHCPMSPQLSGQAQQLGQGQQIGQVLQPGQGQQGYYPTSLQQPGQGQQLGQ 704
Query: 809 PQTSAQQQSWSQAAEQPPVGSPQE 832
Q G Q+
Sbjct: 705 GLQPGQGHQGYYPTSLQQTGQGQQ 728
|
Members of this family include high molecular weight subunits of glutenin. This group of gluten proteins is thought to be largely responsible for the elastic properties of gluten, and hence, doughs. Indeed, glutenin high molecular weight subunits are classified as elastomeric proteins, because the glutenin network can withstand significant deformations without breaking, and return to the original conformation when the stress is removed. Elastomeric proteins differ considerably in amino acid sequence, but they are all polymers whose subunits consist of elastomeric domains, composed of repeated motifs, and non-elastic domains that mediate cross-linking between the subunits. The elastomeric domain motifs are all rich in glycine residues in addition to other hydrophobic residues. High molecular weight glutenin subunits have an extensive central elastomeric domain, flanked by two terminal non-elastic domains that form disulphide cross-links. The central elastomeric domain is characterized by the following three repeated motifs: PGQGQQ, GYYPTS[P/L]QQ, GQQ. It possesses overlapping beta-turns within and between the repeated motifs, and assumes a regular helical secondary structure with a diameter of approx. 1.9 nm and a pitch of approx. 1.5 nm. Length = 779 |
| >gnl|CDD|111993 pfam03157, Glutenin_hmw, High molecular weight glutenin subunit | Back alignment and domain information |
|---|
Score = 41.6 bits (96), Expect = 0.002
Identities = 63/224 (28%), Positives = 77/224 (34%), Gaps = 17/224 (7%)
Query: 626 GQQSFGPNQMAGQQHFTSNQMMGQQSFRPTQMSGYQQFGSNQMMGQQSFGPNKMAGEQPF 685
GQQ P Q + TS Q Q +P Q QQ G Q Q G G+Q
Sbjct: 131 GQQGRQPGQGQPGYYPTSPQHQPGQLQQPAQGQQGQQIGQGQQGQQPEQGQQPGQGQQGQ 190
Query: 686 SPFQRMGQQSSGPSQMSGQQSSGPSQMSGQQSSGPAQMLGQQSLGPNQMER--QQPQGSY 743
P Q Q GQ G QQS GQ P +++ Q QG Y
Sbjct: 191 QPGQGQQPGQGQQGQQLGQGQQGYYPGQLQQSGQ-----GQPGHYPTSLQQLGQGQQGHY 245
Query: 744 QKWGQQAFGSNQMGGQQPSGYNRMGEQQHFGWQQMSGHQPNKIAQ-------WTGQPPSA 796
QQ Q G Q + EQ G Q G Q ++ AQ G P++
Sbjct: 246 LASPQQPGQGQQPGQLQQPAQGQQPEQGQQGQQPAQGQQGHQPAQGQQPGQGQPGHYPAS 305
Query: 797 PSQTAGQQQSWQP---QTSAQQQSWSQAAEQPPVGSPQEDQNPS 837
P Q Q P Q Q Q Q + VG Q+ Q P+
Sbjct: 306 PQQPGQGQPGHYPASSQQPTQSQEPGQGQQGQQVGQGQQAQIPA 349
|
Members of this family include high molecular weight subunits of glutenin. This group of gluten proteins is thought to be largely responsible for the elastic properties of gluten, and hence, doughs. Indeed, glutenin high molecular weight subunits are classified as elastomeric proteins, because the glutenin network can withstand significant deformations without breaking, and return to the original conformation when the stress is removed. Elastomeric proteins differ considerably in amino acid sequence, but they are all polymers whose subunits consist of elastomeric domains, composed of repeated motifs, and non-elastic domains that mediate cross-linking between the subunits. The elastomeric domain motifs are all rich in glycine residues in addition to other hydrophobic residues. High molecular weight glutenin subunits have an extensive central elastomeric domain, flanked by two terminal non-elastic domains that form disulphide cross-links. The central elastomeric domain is characterized by the following three repeated motifs: PGQGQQ, GYYPTS[P/L]QQ, GQQ. It possesses overlapping beta-turns within and between the repeated motifs, and assumes a regular helical secondary structure with a diameter of approx. 1.9 nm and a pitch of approx. 1.5 nm. Length = 779 |
| >gnl|CDD|111993 pfam03157, Glutenin_hmw, High molecular weight glutenin subunit | Back alignment and domain information |
|---|
Score = 41.2 bits (95), Expect = 0.002
Identities = 74/290 (25%), Positives = 95/290 (32%), Gaps = 14/290 (4%)
Query: 570 PPPRTSGPPQMTGQQYSGYNRMAREQQFGSNQMAGQ----QSLGPNQMEGQQHFGSYQRM 625
P P G + ++ + QQ G Q + Q G Q GQ G
Sbjct: 363 PASPLQQGPGQPGHYLTSLQQLGQGQQIGQLQQSAPGQKGQQPGQGQQPGQGQQGQQPGQ 422
Query: 626 GQQSFGPNQMAGQQHFTSNQMMGQ-QSFRPTQMSGYQQFG----SNQMMGQQSFGPNKMA 680
G+Q P Q + TS Q GQ Q Q G Q G S GQ G + +
Sbjct: 423 GEQEQQPGQGQPGYYPTSLQQPGQGQQPGQWQQPGQGQPGYYPTSLLQPGQGQPGHDPAS 482
Query: 681 GEQPF---SPFQRMGQQSSGPSQMSGQQSSGPSQMSGQQSSGPAQMLGQQSLGPNQMERQ 737
+QP P Q P Q Q G QQ PAQ Q LG Q +Q
Sbjct: 483 LQQPGQGQQPGQLQQPAQGQPGQQLAQGQQGQQPAQVQQGQQPAQGQQGQQLGQGQQGQQ 542
Query: 738 QPQGSYQKWGQQAFGSNQMGGQQPSGYNRMGEQQHFGWQQMSGHQPNKIAQWTGQPPSAP 797
QG + G+Q Q Q G + Q + S + + Q
Sbjct: 543 PGQGQHPAQGEQGQQPGQGQQGQQPGQGQQPGQGQPWYYPTSPQESGQGQQPGQWQQPGQ 602
Query: 798 SQTAGQQQSWQPQTSAQQQSWSQAAEQPPVGSPQEDQNPSGPPEWQENHQ 847
Q GQ Q TS Q Q P S Q+ P +WQ++ Q
Sbjct: 603 WQQPGQGQPGYYLTSPLQLGQGQQGYYPT--SLQQPGQGQQPGQWQQSGQ 650
|
Members of this family include high molecular weight subunits of glutenin. This group of gluten proteins is thought to be largely responsible for the elastic properties of gluten, and hence, doughs. Indeed, glutenin high molecular weight subunits are classified as elastomeric proteins, because the glutenin network can withstand significant deformations without breaking, and return to the original conformation when the stress is removed. Elastomeric proteins differ considerably in amino acid sequence, but they are all polymers whose subunits consist of elastomeric domains, composed of repeated motifs, and non-elastic domains that mediate cross-linking between the subunits. The elastomeric domain motifs are all rich in glycine residues in addition to other hydrophobic residues. High molecular weight glutenin subunits have an extensive central elastomeric domain, flanked by two terminal non-elastic domains that form disulphide cross-links. The central elastomeric domain is characterized by the following three repeated motifs: PGQGQQ, GYYPTS[P/L]QQ, GQQ. It possesses overlapping beta-turns within and between the repeated motifs, and assumes a regular helical secondary structure with a diameter of approx. 1.9 nm and a pitch of approx. 1.5 nm. Length = 779 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.003
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 291 WFNQGKD-------KEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQML 343
N G EA++ Y+ +E + L K K EEA +E+ L
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 344 DNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382
+ P+ N+ + + +K GK+ EA+E ++KA
Sbjct: 62 E--LDPD----NAKAYYNLGLAYYKLGKYEEALEAYEKA 94
|
Length = 100 |
| >gnl|CDD|111993 pfam03157, Glutenin_hmw, High molecular weight glutenin subunit | Back alignment and domain information |
|---|
Score = 40.4 bits (93), Expect = 0.004
Identities = 65/260 (25%), Positives = 83/260 (31%), Gaps = 10/260 (3%)
Query: 564 GYAAPVPPPRTSGPPQMTGQQYSGYNRMAREQQFGSNQMAGQQSLGPNQMEGQQHFGSYQ 623
G P G GQQ + + QQ G Q Q G +GQQ Q
Sbjct: 510 GQQGQQPAQVQQGQQPAQGQQGQQLGQGQQGQQPGQGQHPAQGEQGQQPGQGQQ---GQQ 566
Query: 624 RMGQQSFGPNQMAGQQHFTSNQMMGQQSFRPTQMSGYQQFGSNQMMGQQSFGPNKMAGEQ 683
Q G Q GQQ + Q +QQ G Q + G+Q
Sbjct: 567 PGQGQQPGQGQPWYYPTSPQESGQGQQPGQWQQPGQWQQPGQGQPGYYLTSPLQLGQGQQ 626
Query: 684 ---PFSPFQRMGQQSSGPSQMSGQQSSGPSQMSGQQSSGPAQMLGQQSLGPNQMERQQPQ 740
P S Q Q G Q SGQ G MS Q S Q+ Q +G Q Q
Sbjct: 627 GYYPTSLQQPGQGQQPGQWQQSGQGQHGHCPMSPQLSGQAQQLGQGQQIGQVLQPGQGQQ 686
Query: 741 GSYQKWGQQAFGSNQMGGQQPSGYNRMGEQQHFGWQQMSGHQPNKIAQWTGQPPSAPSQT 800
G Y QQ Q+G G G Q G Q + Q +P
Sbjct: 687 GYYPTSLQQPGQGQQLGQGLQPGQGHQGYYPTSLQQTGQGQQSGQ----EKQGYDSPYHV 742
Query: 801 AGQQQSWQPQTSAQQQSWSQ 820
+ + Q+ + + QQ +Q
Sbjct: 743 SAEHQAASLKVAKAQQLAAQ 762
|
Members of this family include high molecular weight subunits of glutenin. This group of gluten proteins is thought to be largely responsible for the elastic properties of gluten, and hence, doughs. Indeed, glutenin high molecular weight subunits are classified as elastomeric proteins, because the glutenin network can withstand significant deformations without breaking, and return to the original conformation when the stress is removed. Elastomeric proteins differ considerably in amino acid sequence, but they are all polymers whose subunits consist of elastomeric domains, composed of repeated motifs, and non-elastic domains that mediate cross-linking between the subunits. The elastomeric domain motifs are all rich in glycine residues in addition to other hydrophobic residues. High molecular weight glutenin subunits have an extensive central elastomeric domain, flanked by two terminal non-elastic domains that form disulphide cross-links. The central elastomeric domain is characterized by the following three repeated motifs: PGQGQQ, GYYPTS[P/L]QQ, GQQ. It possesses overlapping beta-turns within and between the repeated motifs, and assumes a regular helical secondary structure with a diameter of approx. 1.9 nm and a pitch of approx. 1.5 nm. Length = 779 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 851 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.98 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.91 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.89 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.89 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.84 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.83 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.81 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.8 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.8 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.8 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.8 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.79 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.77 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.75 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.75 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.75 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.75 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.73 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.72 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.69 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.67 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.66 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.66 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.66 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.66 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.65 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.62 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.61 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.59 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.58 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.58 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.57 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.56 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.56 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.55 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.55 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.54 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.54 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.53 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.52 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.52 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.49 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.49 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.48 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.48 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.47 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.47 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.47 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.46 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.46 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.44 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.4 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.39 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.38 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.36 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.36 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.35 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.35 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.34 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.33 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.31 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.29 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.29 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.28 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.27 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.27 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.25 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.25 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.25 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.25 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.17 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.17 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.16 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.15 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.15 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.13 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.09 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.09 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.08 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.05 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.03 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.01 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.01 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.97 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.96 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.93 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.91 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.9 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.89 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.88 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.87 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 98.85 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 98.85 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.85 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.82 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.82 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.81 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.81 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.81 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.73 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.73 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.72 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.71 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.71 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.69 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.67 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.65 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.64 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.63 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.58 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.54 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.49 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.49 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.48 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.41 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.41 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.38 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.37 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.37 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.36 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.35 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.31 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.27 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.27 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.25 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.23 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.22 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.21 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.2 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.17 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.13 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.12 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.11 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.1 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.09 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.09 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.09 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.08 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.07 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.06 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.05 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.05 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.04 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 98.04 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.03 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.03 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.02 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.02 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.01 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.01 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.01 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.01 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.0 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.0 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.0 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.99 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.99 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.97 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.97 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.97 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.92 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.9 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.88 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.85 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.83 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.79 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.76 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.75 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.73 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.72 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.72 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.71 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.7 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.69 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.68 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.67 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.66 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.65 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.65 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.64 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.62 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.61 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.61 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.59 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 97.58 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.58 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.54 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.51 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.51 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.51 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.5 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.49 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.49 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.47 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.47 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 97.43 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.42 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.4 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.4 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.4 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 97.4 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.4 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 97.39 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.38 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.37 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.36 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.35 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.33 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.33 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.29 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.28 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.28 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 97.27 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.27 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.26 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.25 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.24 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 97.24 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 97.24 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.21 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.2 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.2 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.19 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.19 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.18 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.18 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.18 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.17 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.15 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 97.14 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.13 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.12 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.12 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.11 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.07 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.06 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 97.05 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.04 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 97.04 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.04 | |
| KOG2034 | 911 | consensus Vacuolar sorting protein PEP3/VPS18 [Int | 97.01 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.97 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.95 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.92 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.92 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.9 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.88 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 96.86 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 96.86 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 96.86 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.84 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.83 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.82 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.78 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.73 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.72 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.71 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 96.71 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.69 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.67 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.66 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.65 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.65 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 96.61 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.57 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.56 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.56 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 96.49 | |
| KOG2034 | 911 | consensus Vacuolar sorting protein PEP3/VPS18 [Int | 96.49 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.46 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.45 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.4 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 96.32 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.31 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.23 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 96.2 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 96.19 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 96.14 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.13 | |
| PRK09687 | 280 | putative lyase; Provisional | 96.07 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 96.06 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 96.02 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 96.0 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 95.99 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.9 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 95.88 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 95.84 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.8 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.77 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 95.74 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.71 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 95.69 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 95.68 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.65 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 95.65 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 95.61 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.6 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.58 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 95.56 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 95.52 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.51 | |
| KOG2168 | 835 | consensus Cullins [Cell cycle control, cell divisi | 95.36 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 95.32 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.28 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.21 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.15 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.9 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.77 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.77 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 94.73 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 94.72 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.61 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.6 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 94.59 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 94.58 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 94.53 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.52 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.51 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 94.46 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 94.44 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.37 | |
| KOG2168 | 835 | consensus Cullins [Cell cycle control, cell divisi | 94.25 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.05 | |
| KOG2199 | 462 | consensus Signal transducing adaptor protein STAM/ | 94.04 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 93.95 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 93.58 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.57 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 93.57 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 93.26 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 93.22 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 93.21 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.13 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 93.08 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 93.0 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 92.91 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 92.89 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 92.7 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 92.55 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 92.24 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.17 | |
| KOG1498 | 439 | consensus 26S proteasome regulatory complex, subun | 92.16 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 92.1 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 92.1 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.01 | |
| KOG2582 | 422 | consensus COP9 signalosome, subunit CSN3 [Posttran | 91.99 | |
| KOG4368 | 757 | consensus Predicted RNA binding protein, contains | 91.91 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 91.76 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.7 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 91.68 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 91.6 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.59 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 91.46 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 91.27 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.23 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.18 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.13 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 91.03 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.99 | |
| KOG2005 | 878 | consensus 26S proteasome regulatory complex, subun | 90.92 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 90.79 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.65 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 90.59 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 90.53 | |
| KOG4274 | 742 | consensus Positive cofactor 2 (PC2), subunit of a | 90.41 | |
| KOG2005 | 878 | consensus 26S proteasome regulatory complex, subun | 90.4 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 90.33 | |
| PF09797 | 365 | NatB_MDM20: N-acetyltransferase B complex (NatB) n | 90.33 | |
| PF09797 | 365 | NatB_MDM20: N-acetyltransferase B complex (NatB) n | 90.32 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.15 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 90.07 | |
| PF14669 | 233 | Asp_Glu_race_2: Putative aspartate racemase | 89.99 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 89.83 | |
| KOG1497 | 399 | consensus COP9 signalosome, subunit CSN4 [Posttran | 89.74 | |
| PRK14700 | 300 | recombination factor protein RarA; Provisional | 89.72 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 89.64 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 89.6 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 89.48 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 89.39 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.21 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 89.2 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.98 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 88.68 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 88.58 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.94 | |
| KOG0889 | 3550 | consensus Histone acetyltransferase SAGA, TRRAP/TR | 87.91 | |
| PF14929 | 547 | TAF1_subA: TAF RNA Polymerase I subunit A | 87.85 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.59 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.52 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.48 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 87.41 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 87.4 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 87.33 | |
| PF11838 | 324 | ERAP1_C: ERAP1-like C-terminal domain; InterPro: I | 87.27 | |
| KOG1676 | 600 | consensus K-homology type RNA binding proteins [RN | 87.25 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 86.87 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 86.86 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 86.86 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 86.78 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 86.78 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 86.52 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 85.57 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 85.41 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 85.17 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.06 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 84.91 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 84.83 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 84.75 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 84.66 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.61 | |
| KOG1498 | 439 | consensus 26S proteasome regulatory complex, subun | 84.43 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.21 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.07 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 83.88 | |
| KOG4521 | 1480 | consensus Nuclear pore complex, Nup160 component [ | 83.67 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 83.64 | |
| PF10475 | 291 | DUF2450: Protein of unknown function N-terminal do | 83.62 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 83.49 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 83.41 | |
| KOG4521 | 1480 | consensus Nuclear pore complex, Nup160 component [ | 83.4 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 83.38 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.25 | |
| PF14669 | 233 | Asp_Glu_race_2: Putative aspartate racemase | 83.16 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 83.12 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.12 | |
| COG4715 | 587 | Uncharacterized conserved protein [Function unknow | 83.05 | |
| COG4715 | 587 | Uncharacterized conserved protein [Function unknow | 82.86 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 82.84 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 82.72 | |
| KOG1497 | 399 | consensus COP9 signalosome, subunit CSN4 [Posttran | 82.68 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 82.65 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 82.59 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.58 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 82.56 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.41 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 82.36 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 82.31 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.14 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 81.76 | |
| PRK14700 | 300 | recombination factor protein RarA; Provisional | 81.54 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 81.53 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.09 | |
| KOG2297 | 412 | consensus Predicted translation factor, contains W | 80.81 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 80.78 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 80.64 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 80.6 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.6 | |
| KOG3598 | 2220 | consensus Thyroid hormone receptor-associated prot | 80.56 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 80.51 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 80.3 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-57 Score=552.14 Aligned_cols=536 Identities=15% Similarity=0.161 Sum_probs=426.1
Q ss_pred HHHHhhcCCCCCCCCCCccccccccCCCHHHHHHHHHHhhccccCCCCCccCCCCCCCCC-CCCCCC-CCCCC--ccccc
Q 038852 25 QFHNLALNPNSPNPNLNPISARGYAFSSAEEAAAERRRRKRRLRIEPPLHAIRPNPTQPP-PRDPNA-PRLPD--TTSAL 100 (851)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~l~~--~~~~~ 100 (851)
.+..+|.....++...|+.+|++|...+....|...+.+|++..+.|...+....-.... ...... ..+.. ....+
T Consensus 139 ~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~ 218 (857)
T PLN03077 139 HAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGF 218 (857)
T ss_pred HHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCC
Confidence 445667777778888999999999999999999999999988766544332210000000 000000 00000 00112
Q ss_pred cCCCccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 038852 101 VGPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNN 180 (851)
Q Consensus 101 ~~~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~ 180 (851)
..+...+..++..|++.|++++|..+|++|. .+|..+||.+|.+|++.|++++|+++|++|. ..|+.||..+|+.
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~-~~g~~Pd~~ty~~ 293 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITS 293 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHH
Confidence 2233556777888888888888888887764 4677788888888888888888888888874 4577788888888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG 260 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g 260 (851)
++.+|++.|+++.|.+++..|.+.+ ..||..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+++|.+|++.|
T Consensus 294 ll~a~~~~g~~~~a~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g 368 (857)
T PLN03077 294 VISACELLGDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNG 368 (857)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHhC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCC
Confidence 8888888888888888888876654 777888888888888888888888888887753 47777888888888888
Q ss_pred CHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 038852 261 NLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFE 340 (851)
Q Consensus 261 ~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~ 340 (851)
++++|+++|++|.+.++.||..+|+.++.+|++.|++++|.++++.+.+.|+.++..+|+.|+.+|++.|++++|+++|+
T Consensus 369 ~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred CHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038852 341 QMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLRE 420 (851)
Q Consensus 341 ~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 420 (851)
+|.+. |..+|+.++.+|++.|+.++|+++|++|.. .+.||..+|+.++.+|++.|+++.+.+++..
T Consensus 449 ~m~~~---------d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-----~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 449 NIPEK---------DVISWTSIIAGLRLNNRCFEALIFFRQMLL-----TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred hCCCC---------CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-----CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 77542 556788888888888888888888888753 2556888888888888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH
Q 038852 421 ISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDF 500 (851)
Q Consensus 421 m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~ 500 (851)
+.+.|+.+|..+++.|+++|+++|++++|.++|+++ .++...|+.++.+|++.|+.++|+++|++|.+.|+.||.
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 888888888888888889999999999999998887 457788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCCCCCCCCCCCC
Q 038852 501 LIYDVVVRGLCNEGLFDMSKDIVDQMM-KYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPVPPPRTSGPPQ 579 (851)
Q Consensus 501 ~~~~~ll~a~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p~~~~~~~~~~ 579 (851)
.||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|.+++++|++.|+++||.+++++| ++.|..
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m------------~~~pd~ 657 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM------------PITPDP 657 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC------------CCCCCH
Confidence 999999999999999999999999999 7899999999999999999999999999999995 456778
Q ss_pred CCCccccCCCcCccccccCCCc
Q 038852 580 MTGQQYSGYNRMAREQQFGSNQ 601 (851)
Q Consensus 580 ~~~~~ll~a~~~~~~~~~g~~~ 601 (851)
..|++++++|+.|+|.++|+.-
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~ 679 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELA 679 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHH
Confidence 8999999999999999998764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-55 Score=523.45 Aligned_cols=445 Identities=15% Similarity=0.235 Sum_probs=419.7
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRI-RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLIN 183 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~ 183 (851)
..+..++..+++.|++++|+++|++|...++ .++..+++.++.+|.+.|.+++|+++|+.|.. ||..+|+.|+.
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~ 445 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMS 445 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHH
Confidence 4577889999999999999999999999885 46788888999999999999999999998842 89999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 038852 184 TYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLE 263 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~ 263 (851)
+|++.|++++|+++|++|.+.+ ..||..+|+.||.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.|+++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 9999999999999999998765 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 038852 264 KANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLME--RNFRMTPATCNTLLEVLLKHEKKEEAQALFEQ 341 (851)
Q Consensus 264 ~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~--~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~ 341 (851)
+|+++|++|.+.++.||..+|+.++.+|++.|++++|.++|++|.+ .++.+|..+|+.||.+|++.|++++|+++|++
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987 57899999999999999999999999999999
Q ss_pred HHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 342 MLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREI 421 (851)
Q Consensus 342 m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 421 (851)
|.+.++.| +..+|+.++.+|++.|++++|+++|++|.. .++.||..+|+.||.+|++.|++++|+++|++|
T Consensus 605 M~e~gi~p-----~~~tynsLI~ay~k~G~~deAl~lf~eM~~----~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 605 IHEYNIKG-----TPEVYTIAVNSCSQKGDWDFALSIYDDMKK----KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHcCCCC-----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999988 789999999999999999999999999954 457789999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH
Q 038852 422 STKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFL 501 (851)
Q Consensus 422 ~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~ 501 (851)
.+.|+.||..+|+.||.+|++.|++++|+++|++|.+.++.++...|+.|+.+|++.|++++|+++|++|.+.|+.||..
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcC-------------------CHHHHHHHH
Q 038852 502 IYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFG----KAG-------------------RGEEIERVL 558 (851)
Q Consensus 502 ~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~----~~G-------------------~~~eA~~ll 558 (851)
+|+.++.+|++.|++++|.++|++|++.|+.++..++++|+.++. +++ ..++|..+|
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence 999999999999999999999999999999999999999887643 222 236788888
Q ss_pred Hhhhhc
Q 038852 559 NADRWG 564 (851)
Q Consensus 559 ~~~~~~ 564 (851)
++|...
T Consensus 836 ~eM~~~ 841 (1060)
T PLN03218 836 RETISA 841 (1060)
T ss_pred HHHHHC
Confidence 888763
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=522.35 Aligned_cols=448 Identities=14% Similarity=0.221 Sum_probs=403.8
Q ss_pred CCccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 038852 103 PRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLI 182 (851)
Q Consensus 103 ~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li 182 (851)
+...|..++..|++.|++++|..+|++|...++.+|..+|+.||.+|++.|++++|+++|++|.+ .|+.||..+|+.||
T Consensus 436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~-~Gv~PdvvTynaLI 514 (1060)
T PLN03218 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN-AGVEANVHTFGALI 514 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999954 67889999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHhcC
Q 038852 183 NTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS--RQLGADSLVYNNLISGFLNLG 260 (851)
Q Consensus 183 ~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~--~g~~pd~~~~~~Li~~~~~~g 260 (851)
.+|++.|++++|+++|++|.+.+ +.||..+|+.||.+|++.|++++|+++|++|.+ .++.||..+|++|+.+|++.|
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~G-v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKN-VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 99999999999999999997764 889999999999999999999999999999976 578899999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 038852 261 NLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFE 340 (851)
Q Consensus 261 ~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~ 340 (851)
++++|+++|++|.+.++.++..+|+.++.+|++.|++++|+++|++|.+.|+.||..+|+.|+.+|++.|++++|+++|+
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038852 341 QMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLRE 420 (851)
Q Consensus 341 ~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 420 (851)
+|.+.|+.| +..+|+.|+.+|++.|++++|+++|++|.. .++.||..+|+.||.+|++.|++++|+++|++
T Consensus 674 eM~k~G~~p-----d~~tynsLI~ay~k~G~~eeA~~lf~eM~~----~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 674 DARKQGIKL-----GTVSYSSLMGACSNAKNWKKALELYEDIKS----IKLRPTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HHHHcCCCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999888 788999999999999999999999999854 34667999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH----c------------------
Q 038852 421 ISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELIT----K------------------ 478 (851)
Q Consensus 421 m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~----~------------------ 478 (851)
|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.++..+|+.++..|.+ +
T Consensus 745 M~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~ 824 (1060)
T PLN03218 745 MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIE 824 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccc
Confidence 999999999999999999999999999999999999999999999999888765432 1
Q ss_pred -CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038852 479 -GKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERV 557 (851)
Q Consensus 479 -g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~l 557 (851)
+..++|+.+|++|++.|+.||..||+.++.++++.+..+.+..+++.|...+..++..+|+.|++.+.+. .++|..+
T Consensus 825 n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l 902 (1060)
T PLN03218 825 NKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSL 902 (1060)
T ss_pred cchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHH
Confidence 2246799999999999999999999999988888888999999999888888888899999999987432 4689999
Q ss_pred HHhhhh
Q 038852 558 LNADRW 563 (851)
Q Consensus 558 l~~~~~ 563 (851)
|++|..
T Consensus 903 ~~em~~ 908 (1060)
T PLN03218 903 LEEAAS 908 (1060)
T ss_pred HHHHHH
Confidence 999975
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-54 Score=512.88 Aligned_cols=442 Identities=16% Similarity=0.238 Sum_probs=418.1
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
..+..++.++.+.++++.|..++..++..++.+|..+||.|+.+|++.|++++|+++|++|.+ +|.++|+.||.+
T Consensus 124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~ 198 (697)
T PLN03081 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGG 198 (697)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999999999943 799999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEK 264 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~ 264 (851)
|++.|++++|+++|++|.+.+ ..||..+|+.++.+|.+.|+.+++.+++..+.+.|+.+|..+|+.|+++|++.|++++
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 999999999999999998764 8899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 038852 265 ANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLD 344 (851)
Q Consensus 265 A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 344 (851)
|.++|++|... |..+|+.++.+|++.|++++|+++|++|.+.|+.+|..||+.++.+|++.|++++|.++++.|++
T Consensus 278 A~~vf~~m~~~----~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 278 ARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred HHHHHHhCCCC----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999754 88899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038852 345 NHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTK 424 (851)
Q Consensus 345 ~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 424 (851)
.|+.+ |..+|+.|+.+|++.|++++|+++|++|.+ +|..+||.||.+|++.|+.++|+++|++|.+.
T Consensus 354 ~g~~~-----d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--------~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~ 420 (697)
T PLN03081 354 TGFPL-----DIVANTALVDLYSKWGRMEDARNVFDRMPR--------KNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420 (697)
T ss_pred hCCCC-----CeeehHHHHHHHHHCCCHHHHHHHHHhCCC--------CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99988 788999999999999999999999999953 28899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 038852 425 SLSPDVTTFRTLIDAYLKVERIDDALELFNRMVE-SGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIY 503 (851)
Q Consensus 425 g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~ 503 (851)
|+.||..||+.++.+|.+.|++++|.++|+.|.+ .++.|+...|+.++++|++.|++++|.+++++| ++.||..+|
T Consensus 421 g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~ 497 (697)
T PLN03081 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMW 497 (697)
T ss_pred CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHH
Confidence 9999999999999999999999999999999986 599999999999999999999999999999876 578999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh-cCCCCCCCCC
Q 038852 504 DVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRW-GYAAPVPPPR 573 (851)
Q Consensus 504 ~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~-~~~~~p~~~~ 573 (851)
+.|+.+|...|+++.|..+++++.+.+. .+...|..|+++|.+.|++++|.+++++|+. +..+.++++|
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p-~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~ 567 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGMGP-EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCC-CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeE
Confidence 9999999999999999999999976542 2467899999999999999999999999985 6778999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-52 Score=511.14 Aligned_cols=488 Identities=16% Similarity=0.181 Sum_probs=360.9
Q ss_pred HHhhcCCCCCCCCCCccccccccCCCHHHHHHHHHHhhccccCCCCCccCCCCCCCCCCCCCCCCCCCCccccccCCCcc
Q 038852 27 HNLALNPNSPNPNLNPISARGYAFSSAEEAAAERRRRKRRLRIEPPLHAIRPNPTQPPPRDPNAPRLPDTTSALVGPRLN 106 (851)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 106 (851)
..+|.....++...|+++|++|...+....|...+.+|+...+. ++...
T Consensus 242 ~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~-------------------------------Pd~~t 290 (857)
T PLN03077 242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD-------------------------------PDLMT 290 (857)
T ss_pred HHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-------------------------------CChhH
Confidence 34444444455555555556555555555555555555544331 11234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYC 186 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~ 186 (851)
+..++.++.+.|+++.|.+++..+++.+..+|..+||.||.+|++.|++++|.++|++|. .+|.++|+.||.+|+
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~ 365 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYE 365 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHH
Confidence 555666666666666666666666666666666666666666666666666666666652 245666666666666
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038852 187 DEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKAN 266 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~ 266 (851)
+.|++++|+++|++|.+.+ +.||..+|+.++.+|++.|++++|.++++.|.+.|+.+|..+|+.|+++|++.|++++|+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g-~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 366 KNGLPDKALETYALMEQDN-VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred hCCCHHHHHHHHHHHHHhC-CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666665433 556666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038852 267 ELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNH 346 (851)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~ 346 (851)
++|++|.+. |..+|+.++.+|++.|+.++|+++|++|.. ++.||..+|+.++.+|++.|+.+.+.+++..+++.|
T Consensus 445 ~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 445 EVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 666666542 455666666666666666666666666654 356666666666666666666666666666666666
Q ss_pred CCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038852 347 QPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSL 426 (851)
Q Consensus 347 ~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 426 (851)
+.+ +..+++.|+.+|++.|++++|+++|+.+ . +|..+|+.||.+|++.|+.++|+++|++|.+.|+
T Consensus 520 ~~~-----~~~~~naLi~~y~k~G~~~~A~~~f~~~-~--------~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 520 IGF-----DGFLPNALLDLYVRCGRMNYAWNQFNSH-E--------KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred CCc-----cceechHHHHHHHHcCCHHHHHHHHHhc-C--------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 665 5667788889999999999999999887 1 2899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 038852 427 SPDVTTFRTLIDAYLKVERIDDALELFNRMV-ESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDV 505 (851)
Q Consensus 427 ~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ 505 (851)
.||..||+.|+.+|.+.|++++|.++|+.|. +.++.|+..+|+.++++|.+.|++++|.+++++|. ++||..+|.+
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~a 662 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGA 662 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHH
Confidence 9999999999999999999999999999999 67999999999999999999999999999999984 6899999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh-cCCCCCCCCCC
Q 038852 506 VVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRW-GYAAPVPPPRT 574 (851)
Q Consensus 506 ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~-~~~~~p~~~~~ 574 (851)
|+.+|...|+.+.+....+++.+.. +.+...|..|.++|...|++++|.++.+.|++ +..+.+|++|.
T Consensus 663 Ll~ac~~~~~~e~~e~~a~~l~~l~-p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 663 LLNACRIHRHVELGELAAQHIFELD-PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhhC-CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence 9999999999999999999988754 34667788899999999999999999999985 77899999994
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=489.77 Aligned_cols=441 Identities=18% Similarity=0.208 Sum_probs=414.8
Q ss_pred CccHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 038852 104 RLNLHNRVQSLIRAGDLDAASYLARQAVFSR-IRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLI 182 (851)
Q Consensus 104 ~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li 182 (851)
...+...+..+.+.|++++|+.+|+.|...+ ..+|..+|+.++.+|.+.++++.|..++..|.+ .|+.+|..+|+.|+
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~-~g~~~~~~~~n~Li 165 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES-SGFEPDQYMMNRVL 165 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCcchHHHHHHH
Confidence 3578899999999999999999999998764 678999999999999999999999999999854 68999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 038852 183 NTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNL 262 (851)
Q Consensus 183 ~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~ 262 (851)
.+|++.|++++|+++|++|. .+|..+|+.|+.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|.+.|+.
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 99999999999999999995 3588899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038852 263 EKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQM 342 (851)
Q Consensus 263 ~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m 342 (851)
+.+.+++..+.+.++.+|..+++.|+++|+++|++++|.++|++|.+. |..+||.||.+|++.|++++|+++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC----ChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999654 6699999999999999999999999999
Q ss_pred HHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038852 343 LDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREIS 422 (851)
Q Consensus 343 ~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 422 (851)
.+.|+.| |..+|+.++.+|++.|++++|.+++..+.+. ++.+|..+|+.|+++|++.|++++|+++|++|.
T Consensus 317 ~~~g~~p-----d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~----g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 317 RDSGVSI-----DQFTFSIMIRIFSRLALLEHAKQAHAGLIRT----GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHcCCCC-----CHHHHHHHHHHHHhccchHHHHHHHHHHHHh----CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 9999999 7899999999999999999999999999653 466799999999999999999999999999996
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCCCCCHH
Q 038852 423 TKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGE-KDPKPDFL 501 (851)
Q Consensus 423 ~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~-~~~~pd~~ 501 (851)
+ +|..+|+.||.+|++.|+.++|+++|++|.+.|+.|+..+|+.++.+|.+.|++++|.++|+.|.+ .|+.|+..
T Consensus 388 ~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 388 R----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred C----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 4 589999999999999999999999999999999999999999999999999999999999999986 59999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCCC
Q 038852 502 IYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPVP 570 (851)
Q Consensus 502 ~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p~ 570 (851)
+|+.++++|++.|++++|.+++++| ++.++..+|..|+.++...|+++.|.++++++....|...+
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~ 529 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN 529 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc
Confidence 9999999999999999999998765 67899999999999999999999999999998776655443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-28 Score=305.56 Aligned_cols=432 Identities=16% Similarity=0.132 Sum_probs=226.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 038852 108 HNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCD 187 (851)
Q Consensus 108 ~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~ 187 (851)
..++..+.+.|++++|+.+++++.... ..+..+|+.++.+|...|++++|+++|+++++... .+...+..++.++..
T Consensus 435 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 435 LLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP--DFFPAAANLARIDIQ 511 (899)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHH
Confidence 344555566666666666666655432 33445555566666666666666666666554322 234445555555555
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038852 188 EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANE 267 (851)
Q Consensus 188 ~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~ 267 (851)
.|++++|+++|+++++.++. +..++..++.++.+.|++++|+.+|+++.+.+.. +...+..++..|.+.|++++|++
T Consensus 512 ~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTIDPK--NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred CCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHH
Confidence 55555555555555554433 4445555555555555555555555555544332 34444455555555555555555
Q ss_pred HHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 038852 268 LFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQ 347 (851)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~ 347 (851)
+++++.+.... +..++..++.+|...|++++|++.|+++++.+. .+...+..++.+|...|++++|+++|+++++...
T Consensus 589 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 666 (899)
T TIGR02917 589 ILNEAADAAPD-SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKP 666 (899)
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 55555443322 344455555555555555555555555544432 2233444445555555555555555555444211
Q ss_pred C--------------------------------CCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCH
Q 038852 348 P--------------------------------PNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDV 395 (851)
Q Consensus 348 ~--------------------------------p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~ 395 (851)
. ++ +...+..++.++...|++++|++.|+++....+ +.
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~------~~ 736 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK----AALGFELEGDLYLRQKDYPAAIQAYRKALKRAP------SS 736 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC----ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC------Cc
Confidence 1 11 334444455555555555555555555543322 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Q 038852 396 AGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNEL 475 (851)
Q Consensus 396 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~ 475 (851)
.++..++.++.+.|++++|.+.++++++.. ..+..++..++.+|.+.|++++|+++|+++++.+.. +...+..++..+
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~ 814 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLY 814 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 334445555555555555555555555432 224455555555555556666666666665555432 233333455555
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038852 476 ITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIE 555 (851)
Q Consensus 476 ~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~ 555 (851)
...|+ .+|+++++++.+.... +..++..+..++...|++++|+++|+++++.+.. +..++..++.+|.+.|++++|+
T Consensus 815 ~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 891 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEAR 891 (899)
T ss_pred HhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 55555 5566666655554322 3445555666666666666666666666665533 5666666666666666666666
Q ss_pred HHHHhhh
Q 038852 556 RVLNADR 562 (851)
Q Consensus 556 ~ll~~~~ 562 (851)
+++++|+
T Consensus 892 ~~~~~~~ 898 (899)
T TIGR02917 892 KELDKLL 898 (899)
T ss_pred HHHHHHh
Confidence 6666654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.1e-28 Score=298.73 Aligned_cols=438 Identities=15% Similarity=0.150 Sum_probs=338.5
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
.+..+...+...|++++|+..+++++..... +......++..+.+.|++++|+++++++.... ..+..+|+.++.+|
T Consensus 399 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 475 (899)
T TIGR02917 399 ARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ--PDNASLHNLLGAIY 475 (899)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHH
Confidence 4567788889999999999999999876533 34556678888999999999999999997643 35677899999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKA 265 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 265 (851)
...|++++|+++|+++++.++. +...+..++..+...|++++|+++|+++++.+.. +..++..++..+.+.|++++|
T Consensus 476 ~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 552 (899)
T TIGR02917 476 LGKGDLAKAREAFEKALSIEPD--FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEA 552 (899)
T ss_pred HhCCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999988765 6778999999999999999999999999988665 788999999999999999999
Q ss_pred HHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038852 266 NELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 345 (851)
..+|+++.+.+.. +...+..++..|.+.|++++|+++++++.+... .+..+|..++.+|...|++++|+.+|+++++.
T Consensus 553 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 630 (899)
T TIGR02917 553 VAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL 630 (899)
T ss_pred HHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999887655 677888899999999999999999999987653 46688999999999999999999999999875
Q ss_pred CCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038852 346 HQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKS 425 (851)
Q Consensus 346 ~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 425 (851)
. |+ +...+..++.+|...|++++|+.+|+++....+. +..++..++..+...|++++|+++++.+.+..
T Consensus 631 ~--~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 699 (899)
T TIGR02917 631 Q--PD----SALALLLLADAYAVMKNYAKAITSLKRALELKPD-----NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH 699 (899)
T ss_pred C--CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4 32 6778999999999999999999999998776554 66777778888888888888888887777653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 038852 426 LSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDV 505 (851)
Q Consensus 426 ~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ 505 (851)
..+...+..++.+|...|++++|+++|+++++.+... ..+..++.++...|++++|++.++++++.... +...+..
T Consensus 700 -~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~ 775 (899)
T TIGR02917 700 -PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTA 775 (899)
T ss_pred -cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 2355666777777777777777777777777654333 22333555666666666666666666554322 4555555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC--------------------------------CCCHHHHHHHHHHHHhcCCHHH
Q 038852 506 VVRGLCNEGLFDMSKDIVDQMMKYGV--------------------------------GITPALQDFVRETFGKAGRGEE 553 (851)
Q Consensus 506 ll~a~~~~g~~~~A~~~~~~m~~~g~--------------------------------~~~~~~~~~L~~~~~~~G~~~e 553 (851)
+...|...|++++|+++|+++++... +.+...+..++.++.+.|++++
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADR 855 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence 55556666666666666666554331 1223333445555666666666
Q ss_pred HHHHHHhhhhcCC
Q 038852 554 IERVLNADRWGYA 566 (851)
Q Consensus 554 A~~ll~~~~~~~~ 566 (851)
|.++|+++....+
T Consensus 856 A~~~~~~a~~~~~ 868 (899)
T TIGR02917 856 ALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHhhCC
Confidence 6666666655444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-27 Score=249.00 Aligned_cols=439 Identities=15% Similarity=0.130 Sum_probs=280.2
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
+...++..+.+.|+++.|++....+-..+ ..+....-.+-..+....+++.....-...++... --..+|..+++++
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~--q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP--QGAEAYSNLANIL 126 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccc--hHHHHHHHHHHHH
Confidence 46778889999999999998766544333 22233333344455556666665554444433321 2355677777777
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKA 265 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 265 (851)
...|++++|+.+|+.+++..+. .++.|..++.++...|+.+.|...|.+++..++. .....+.++......|++++|
T Consensus 127 kerg~~~~al~~y~~aiel~p~--fida~inla~al~~~~~~~~a~~~~~~alqlnP~-l~ca~s~lgnLlka~Grl~ea 203 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPK--FIDAYINLAAALVTQGDLELAVQCFFEALQLNPD-LYCARSDLGNLLKAEGRLEEA 203 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCch--hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc-hhhhhcchhHHHHhhcccchh
Confidence 7777777777777777776555 5667777777777777777777777777765332 223344455556666777777
Q ss_pred HHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038852 266 NELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 345 (851)
...|.++++.... -...|..|...+...|+.-+|+..|+++++.++..- ..|..|+..|...+.+++|+..|.+++.
T Consensus 204 ~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~-dAYiNLGnV~ke~~~~d~Avs~Y~rAl~- 280 (966)
T KOG4626|consen 204 KACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL-DAYINLGNVYKEARIFDRAVSCYLRALN- 280 (966)
T ss_pred HHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch-HHHhhHHHHHHHHhcchHHHHHHHHHHh-
Confidence 7777776665443 345666777777777777777777777776654332 3555577777777777777777777665
Q ss_pred CCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038852 346 HQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKS 425 (851)
Q Consensus 346 ~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 425 (851)
..|+ ...++..|+.+|...|.+|.|++.|+++++..+. -...|+.|..++...|++.+|++.|++.+...
T Consensus 281 -lrpn----~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-----F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 281 -LRPN----HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-----FPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred -cCCc----chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-----chHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 3343 5666777777777777777777777777665554 34567777777777777777777777776542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHHH
Q 038852 426 LSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPD-FLIYD 504 (851)
Q Consensus 426 ~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd-~~~~~ 504 (851)
. ......+.|+.+|...|.+++|..+|.++++....-.... +.|...|-..|++++|+..|++.++. +|+ ...|+
T Consensus 351 p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~-nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~ 426 (966)
T KOG4626|consen 351 P-NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAH-NNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALS 426 (966)
T ss_pred C-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhh-hhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHH
Confidence 2 2345666677777777777777777777776543333333 33666777777777777777776653 333 34566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCC
Q 038852 505 VVVRGLCNEGLFDMSKDIVDQMMKYGVGIT-PALQDFVRETFGKAGRGEEIERVLNADRWGYAAPV 569 (851)
Q Consensus 505 ~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p 569 (851)
.+...|...|+.+.|+..+.+++..+ |. .+..+.|+.+|...|+..+|+.-|+...+.-|+-|
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 66667777777777777777766533 22 22333466677777777777777777666555444
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-23 Score=264.44 Aligned_cols=436 Identities=13% Similarity=0.054 Sum_probs=344.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHH----------
Q 038852 109 NRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSY---------- 178 (851)
Q Consensus 109 ~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~---------- 178 (851)
.+...+...|++++|+..|++++... ..+..++..|..+|.+.|++++|+..|+++++......+...|
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 34667888999999999999999765 3478889999999999999999999999998765433332222
Q ss_pred --HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 179 --NNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 179 --~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
..+...+.+.|++++|++.|+++++.++. +...+..|+.++...|++++|++.|+++++.... +...+..++..|
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~--~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~ 429 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNT--DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 23355778899999999999999998776 7778899999999999999999999999988655 667777888877
Q ss_pred HhcCCHHHHHHHHHHHHhcCCc--------cchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 038852 257 LNLGNLEKANELFDELKQRCLV--------YDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLK 328 (851)
Q Consensus 257 ~~~g~~~~A~~~~~~~~~~~~~--------~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~ 328 (851)
. .++.++|+.+++.+...... .....+..++..+...|++++|+++|+++++.++. +...+..++.+|.+
T Consensus 430 ~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 430 R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQ 507 (1157)
T ss_pred H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 5 46789999988765432111 11234566778899999999999999999998764 55677789999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCC-----ccCHHHHHHHHH
Q 038852 329 HEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPF-----AMDVAGYNNIIA 403 (851)
Q Consensus 329 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~d~~~~~~li~ 403 (851)
.|++++|+.+|+++++. .|+ +...+..++..+...++.++|+.+++++........+ ......+..++.
T Consensus 508 ~G~~~~A~~~l~~al~~--~P~----~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQ--KPN----DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred cCCHHHHHHHHHHHHHc--CCC----CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 99999999999999874 343 6777778888888999999999999987432111100 001112345677
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHH
Q 038852 404 RYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAE 483 (851)
Q Consensus 404 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~ 483 (851)
.+...|++++|+++++. ...+...+..|+..|.+.|++++|+++|+++++..+... .....++.+|...|++++
T Consensus 582 ~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~-~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNA-DARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHH
Confidence 88899999999999872 234566778899999999999999999999999876544 444558899999999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 484 CAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGIT-----PALQDFVRETFGKAGRGEEIERVL 558 (851)
Q Consensus 484 A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~L~~~~~~~G~~~eA~~ll 558 (851)
|+++|+++.+.... +..++..+..++...|++++|+++|+++++...... ..++..++.++.+.|+.++|+++|
T Consensus 656 A~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 656 ARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999998875332 556777788899999999999999999987543222 235555789999999999999999
Q ss_pred Hhhhh
Q 038852 559 NADRW 563 (851)
Q Consensus 559 ~~~~~ 563 (851)
++...
T Consensus 735 ~~Al~ 739 (1157)
T PRK11447 735 KDAMV 739 (1157)
T ss_pred HHHHh
Confidence 99864
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-25 Score=235.76 Aligned_cols=382 Identities=19% Similarity=0.199 Sum_probs=318.8
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHH-HHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVS-YNNLIN 183 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~-~~~Li~ 183 (851)
..|.++...+-..|++.+|+.+++.+++.. ...+..|..+..++...|+.+.|...|-+++.. .|+.+. ...+..
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---CcchhhhhcchhH
Confidence 457778899999999999999999999665 335788999999999999999999999988774 455443 345566
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 038852 184 TYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLE 263 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~ 263 (851)
.+...|++++|...|.++++..+. =..+|..|+..+...|+.-+|+..|+++++.++. -...|..|+..|...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~--fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPC--FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCc--eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcch
Confidence 667789999999999999987654 4568999999999999999999999999987654 5678999999999999999
Q ss_pred HHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 038852 264 KANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQML 343 (851)
Q Consensus 264 ~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~ 343 (851)
+|+..|.+++..... ...++..+...|...|.+|.|++.|+++++..+... ..|+.|..++...|++.+|+++|.+++
T Consensus 270 ~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~-~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP-DAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCCch-HHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 999999998876655 677888888899999999999999999998876443 688999999999999999999999999
Q ss_pred HcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 344 DNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREIST 423 (851)
Q Consensus 344 ~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 423 (851)
... |+ .....+.|+.+|...|++++|..+|+++.+..+. -...++.|...|-..|++++|+..|++.++
T Consensus 348 ~l~--p~----hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-----~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 348 RLC--PN----HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-----FAAAHNNLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred HhC--Cc----cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-----hhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence 853 33 6789999999999999999999999999876554 567789999999999999999999999985
Q ss_pred CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHH
Q 038852 424 KSLSPD-VTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLI 502 (851)
Q Consensus 424 ~g~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~ 502 (851)
+.|+ ...|+.++..|...|+.+.|+..|.+++..++..... ++.|...|...|++.+|+.-|+..++.+... ...
T Consensus 417 --I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeA-hsNLasi~kDsGni~~AI~sY~~aLklkPDf-pdA 492 (966)
T KOG4626|consen 417 --IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEA-HSNLASIYKDSGNIPEAIQSYRTALKLKPDF-PDA 492 (966)
T ss_pred --cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHH-HhhHHHHhhccCCcHHHHHHHHHHHccCCCC-chh
Confidence 4666 5689999999999999999999999999877544444 4458899999999999999999998864331 234
Q ss_pred HHHHHHHH
Q 038852 503 YDVVVRGL 510 (851)
Q Consensus 503 ~~~ll~a~ 510 (851)
|..++.++
T Consensus 493 ~cNllh~l 500 (966)
T KOG4626|consen 493 YCNLLHCL 500 (966)
T ss_pred hhHHHHHH
Confidence 44454443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-23 Score=256.40 Aligned_cols=445 Identities=13% Similarity=0.072 Sum_probs=321.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYC 186 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~ 186 (851)
...+++.+.+.|++++|+..|++++.............+.......|++++|++.|+++++..+ .+...+..+..++.
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P--~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP--GNTGLRNTLALLLF 192 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHH
Confidence 3566778899999999999999988654322121111122222345999999999999987643 35677889999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCC-------------------------------CCHHH---------------------H
Q 038852 187 DEGKVDEGMNVFRRIIETAPVG-------------------------------PSSNT---------------------Y 214 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~-------------------------------p~~~~---------------------~ 214 (851)
..|++++|+++|+++.+..... ++... .
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~ 272 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA 272 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence 9999999999999886532100 00000 0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccch-h-----------
Q 038852 215 RHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDG-V----------- 282 (851)
Q Consensus 215 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~-~----------- 282 (851)
..++.++...|++++|+..|+++++.... |..++..|+.+|.+.|++++|+..|+++++....... .
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 12245667789999999999999998665 8889999999999999999999999999886544221 1
Q ss_pred -hHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 038852 283 -VNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNI 361 (851)
Q Consensus 283 -~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~ 361 (851)
....+...+.+.|++++|+++|+++++... .+...+..++.++...|++++|++.|+++++.. |+ +..++..
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~----~~~a~~~ 424 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PG----NTNAVRG 424 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC----CHHHHHH
Confidence 112335567889999999999999999875 345677789999999999999999999998743 32 3333333
Q ss_pred ------------------------------------------HHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHH
Q 038852 362 ------------------------------------------MVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYN 399 (851)
Q Consensus 362 ------------------------------------------L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~ 399 (851)
++..+...|++++|+++|+++....+. +...+.
T Consensus 425 L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-----~~~~~~ 499 (1157)
T PRK11447 425 LANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-----SVWLTY 499 (1157)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHH
Confidence 334455678888888888888776555 666777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------
Q 038852 400 NIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESG------------------- 460 (851)
Q Consensus 400 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~------------------- 460 (851)
.++.+|.+.|++++|+.+|+++++... .+...+..++..+...++.++|+.+++++....
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~ 578 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE 578 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence 788888888888888888888776422 234444444444445555555555544321100
Q ss_pred --------------------CccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 038852 461 --------------------LRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSK 520 (851)
Q Consensus 461 --------------------~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~ 520 (851)
...+...+..+...|.+.|++++|+++|+++++.... +...+..++.+|...|++++|+
T Consensus 579 ~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 0112233345778888999999999999999987544 6788888999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCC
Q 038852 521 DIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPV 569 (851)
Q Consensus 521 ~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p 569 (851)
++++.+.+.. +.+......++.++.+.|++++|.++|+++....++.+
T Consensus 658 ~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 658 AQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 9999887643 24556667788899999999999999999887766544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-22 Score=239.15 Aligned_cols=428 Identities=13% Similarity=0.089 Sum_probs=308.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYC 186 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~ 186 (851)
+......+.+.|++++|+..|++++.. .|+...|..+..+|.+.|++++|++.++++++... .+...|..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p--~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP--DYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHH
Confidence 556788899999999999999998854 46777888899999999999999999999987532 35678899999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------------------
Q 038852 187 DEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG----------------------- 243 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~----------------------- 243 (851)
..|++++|+..|..+...++. +......++..+... .+.....++++....
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~--~~~~~~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGF--RNEQSAQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAG 279 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhh
Confidence 999999999988877665543 221212222111111 111111111111100
Q ss_pred ------CCH---HHHHHHHHHH---HhcCCHHHHHHHHHHHHhcCC--ccchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 244 ------ADS---LVYNNLISGF---LNLGNLEKANELFDELKQRCL--VYDGVVNATFMEWWFNQGKDKEAMQSYKSLME 309 (851)
Q Consensus 244 ------pd~---~~~~~Li~~~---~~~g~~~~A~~~~~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 309 (851)
.+. ..+..+...+ ...+++++|+++|+++++.+. ..+...+..++.++...|++++|+..|+++++
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 000 0111111111 223678999999999887641 22456788888889999999999999999988
Q ss_pred hcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCC
Q 038852 310 RNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSK 389 (851)
Q Consensus 310 ~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~ 389 (851)
.+.. +...|..++.++...|++++|+.+|+++++. .|+ +..+|..++.+|...|++++|+..|++++...+.
T Consensus 360 l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~- 431 (615)
T TIGR00990 360 LDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSE----DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD- 431 (615)
T ss_pred cCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-
Confidence 7643 3467888899999999999999999999875 343 7889999999999999999999999999877665
Q ss_pred CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchh---
Q 038852 390 PFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVS--- 466 (851)
Q Consensus 390 ~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--- 466 (851)
+...|..++.++.+.|++++|+..|+++++. ..-+..+|+.++.++...|++++|++.|+++++........
T Consensus 432 ----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~ 506 (615)
T TIGR00990 432 ----FIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMN 506 (615)
T ss_pred ----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccccc
Confidence 6778888999999999999999999998875 23357788999999999999999999999999875432221
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038852 467 ---FGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRE 543 (851)
Q Consensus 467 ---~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~ 543 (851)
++...+..+...|++++|+++++++++.+.. +...+..+..++...|++++|+++|+++++..-. ..+
T Consensus 507 ~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~-~~e------- 577 (615)
T TIGR00990 507 VLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAELART-EGE------- 577 (615)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc-HHH-------
Confidence 1222223344569999999999998877543 4567888999999999999999999998864321 111
Q ss_pred HHHhcCCHHHHHHHHHhhhhcCCC
Q 038852 544 TFGKAGRGEEIERVLNADRWGYAA 567 (851)
Q Consensus 544 ~~~~~G~~~eA~~ll~~~~~~~~~ 567 (851)
...+..+.+|.++...+.+.||+
T Consensus 578 -~~~a~~~~~a~~~~~~~~~~~~~ 600 (615)
T TIGR00990 578 -LVQAISYAEATRTQIQVQEDYPV 600 (615)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhHH
Confidence 22333455666665555555553
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-22 Score=234.17 Aligned_cols=404 Identities=13% Similarity=0.043 Sum_probs=304.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKG 220 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~ 220 (851)
.+..++..+.+.|++++|++.|+++++. .|+...|..+..+|.+.|++++|++.++++++.++. +..+|..++.+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~--~~~a~~~~a~a 203 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD--YSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHH
Confidence 4567788899999999999999999764 467888999999999999999999999999998766 78899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------------------------c
Q 038852 221 FVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQ-------------------------R 275 (851)
Q Consensus 221 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-------------------------~ 275 (851)
|...|++++|+..|..+...+...+.. ...++..+.......++.+.++.-.. .
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 999999999999998776653221222 11222211111111111111111000 0
Q ss_pred CCccch---hhHHHHHHHH---HHcCCHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 038852 276 CLVYDG---VVNATFMEWW---FNQGKDKEAMQSYKSLMERN--FRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQ 347 (851)
Q Consensus 276 ~~~~d~---~~~~~li~~~---~~~g~~~~A~~l~~~~~~~~--~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~ 347 (851)
....+. ..+..+...+ ...+++++|+++|+++++.+ .......|+.++.++...|++++|+..|+++++.
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l-- 360 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL-- 360 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 000000 0111111111 22468999999999999865 2234567888999999999999999999999985
Q ss_pred CCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038852 348 PPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLS 427 (851)
Q Consensus 348 ~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 427 (851)
.|+ +...|..++.++...|++++|+.+|+++....+. +..+|..++.++...|++++|+..|++.++...
T Consensus 361 ~P~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P- 430 (615)
T TIGR00990 361 DPR----VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-----DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP- 430 (615)
T ss_pred CCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 343 6779999999999999999999999999877555 778899999999999999999999999997632
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH------
Q 038852 428 PDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFL------ 501 (851)
Q Consensus 428 pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~------ 501 (851)
.+...+..++.++.+.|++++|+.+|+++++.... +...+..+..+|...|++++|++.|++.++.....+..
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 35778888999999999999999999999987543 44556668999999999999999999998764332111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhc
Q 038852 502 IYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWG 564 (851)
Q Consensus 502 ~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~ 564 (851)
.++..+..+...|++++|+++++++++.+. .+...+..++.++.+.|++++|+++|++..+.
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 122222233446999999999999988652 34456777999999999999999999997654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-20 Score=221.67 Aligned_cols=339 Identities=12% Similarity=0.053 Sum_probs=217.6
Q ss_pred CCccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 038852 103 PRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLI 182 (851)
Q Consensus 103 ~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li 182 (851)
...++...+..+.+.|++++|+.+++.++..... +...+..++.++...|++++|+..|+++++... .+...|..++
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P--~~~~a~~~la 117 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV--CQPEDVLLVA 117 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC--CChHHHHHHH
Confidence 3345666677777777777777777776655433 334444455555667777777777777766433 2345566677
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 038852 183 NTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNL 262 (851)
Q Consensus 183 ~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~ 262 (851)
.++...|++++|++.|+++++..+. +...+..++.++...|++++|+..++.+...... +...+..+ ..+...|++
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~P~--~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~ 193 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAFSG--NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRL 193 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCH
Confidence 7777777777777777777776555 5566777777777777777777777776665443 33333333 236667777
Q ss_pred HHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHH----HHHH
Q 038852 263 EKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEE----AQAL 338 (851)
Q Consensus 263 ~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~----A~~l 338 (851)
++|+.+++.+++.....+...+..++.++.+.|++++|+..|+++++.+. .+...+..++.+|...|++++ |+..
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 77777777766654333334444555666777777777777777776653 245566667777777777764 6777
Q ss_pred HHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 339 FEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLL 418 (851)
Q Consensus 339 ~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~ 418 (851)
|+++++. .|+ +..++..++.++.+.|++++|+.+|+++....+. +...+..++.+|.+.|++++|+..|
T Consensus 273 ~~~Al~l--~P~----~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-----~~~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 273 WRHALQF--NSD----NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-----LPYVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred HHHHHhh--CCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777663 343 5667777777777777777777777777665444 5556666777777777777777777
Q ss_pred HHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q 038852 419 REISTKSLSPDV-TTFRTLIDAYLKVERIDDALELFNRMVESGLR 462 (851)
Q Consensus 419 ~~m~~~g~~pd~-~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~ 462 (851)
+++.+. .|+. ..+..++.++...|++++|++.|+++++...+
T Consensus 342 ~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 342 VQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 777654 2332 33334556667777777777777777765433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-20 Score=221.73 Aligned_cols=366 Identities=13% Similarity=0.047 Sum_probs=287.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038852 142 CNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGF 221 (851)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~ 221 (851)
...++..+.+.|++++|+.+++.++.... -+...+..++.++...|++++|+..|+++++.+|. +...|..++.++
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p--~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~--~~~a~~~la~~l 120 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAK--NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC--QPEDVLLVASVL 120 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCC--CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHH
Confidence 34456677789999999999999877543 34556777777888899999999999999998877 667889999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHH
Q 038852 222 VDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAM 301 (851)
Q Consensus 222 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~ 301 (851)
...|++++|++.|+++++.... +...+..++.++...|++++|...++.+...... +...+..+ ..+...|++++|+
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHH
Confidence 9999999999999999987555 6788889999999999999999999988776554 33334333 3478899999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHH----HHH
Q 038852 302 QSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSE----AIE 377 (851)
Q Consensus 302 ~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~----A~~ 377 (851)
.+++.+++.....+...+..++.++...|++++|+..|++++... |+ +...+..++.+|...|++++ |+.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~----~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LD----GAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC----CHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 999998887654444556667788899999999999999999754 44 68889999999999999986 899
Q ss_pred HHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 378 TFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMV 457 (851)
Q Consensus 378 ~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~ 457 (851)
.|+++....+. +...+..++.++...|++++|+..++++++... .+...+..++.+|.+.|++++|+..|+++.
T Consensus 272 ~~~~Al~l~P~-----~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 272 HWRHALQFNSD-----NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHhhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999877665 788899999999999999999999999987632 246678888999999999999999999999
Q ss_pred HcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH----HHHHHHHHhcCChHHHHHHHHHHH
Q 038852 458 ESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIY----DVVVRGLCNEGLFDMSKDIVDQMM 527 (851)
Q Consensus 458 ~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~----~~ll~a~~~~g~~~~A~~~~~~m~ 527 (851)
+.+.... .++..+..++...|++++|++.|+++++...+--...| ..+-.++...+..++....+.++.
T Consensus 346 ~~~P~~~-~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 346 REKGVTS-KWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HhCccch-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 8764432 34444567889999999999999998876433222333 333344444555554434444444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-21 Score=214.21 Aligned_cols=448 Identities=14% Similarity=0.165 Sum_probs=344.7
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRP--TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLI 182 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li 182 (851)
..+..+...+...|++..+..+.+.++.....- -...|..++++|...|++++|...|-+.+....-. -+..+..|+
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-~~l~~~Glg 349 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-FVLPLVGLG 349 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-ccccccchh
Confidence 455667777788889998888888877654221 23457788888889999999999988876543211 244566788
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038852 183 NTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG----RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN 258 (851)
Q Consensus 183 ~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g----~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~ 258 (851)
..|++.|+++.+...|+++.+..+. +..+..+|+..|...+ ..++|..++.+.++..+. |...|..+..+|..
T Consensus 350 Qm~i~~~dle~s~~~fEkv~k~~p~--~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 350 QMYIKRGDLEESKFCFEKVLKQLPN--NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQ 426 (1018)
T ss_pred HHHHHhchHHHHHHHHHHHHHhCcc--hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHh
Confidence 8899999999999999999888766 6778888888887765 567888888888877554 88888888777766
Q ss_pred cCCHHHHHHHHHHHH----hcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCCCCH------HHHHHHHHH
Q 038852 259 LGNLEKANELFDELK----QRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMER---NFRMTP------ATCNTLLEV 325 (851)
Q Consensus 259 ~g~~~~A~~~~~~~~----~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~---~~~~~~------~~~~~Li~~ 325 (851)
..-+. ++.+|..+. ..+...-..+.+.++..++..|++++|.+.|+.++.. ....+. .+-..+..+
T Consensus 427 ~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 TDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred cChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 44433 366666554 3344467788999999999999999999999988765 112222 123337788
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHH
Q 038852 326 LLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARY 405 (851)
Q Consensus 326 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~ 405 (851)
+...++++.|.+.|..+++.... -...|..++.+....+...+|..+++.+...+.. +...+..++..+
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~------YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-----np~arsl~G~~~ 574 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPG------YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-----NPNARSLLGNLH 574 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCch------hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-----CcHHHHHHHHHH
Confidence 88888999999999999986433 4567777776666778899999999999877666 677788888899
Q ss_pred HhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHcCCccchhHHHHHH
Q 038852 406 CENEMLEEAEKLLREISTKS-LSPDVTTFRTLIDAYLK------------VERIDDALELFNRMVESGLRVVVSFGTKVF 472 (851)
Q Consensus 406 ~~~g~~~~A~~l~~~m~~~g-~~pd~~~~~~Ll~~~~~------------~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~ 472 (851)
.+..++..|.+-|+.+.+.- ..+|..+...|++.|.. .+.+++|+.+|.++++.+++..... +-++
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAA-NGIg 653 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAA-NGIG 653 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhc-cchh
Confidence 99888988888777766542 22577787888886643 3457889999999998875544333 4478
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCH
Q 038852 473 NELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMK-YGVGITPALQDFVRETFGKAGRG 551 (851)
Q Consensus 473 ~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~L~~~~~~~G~~ 551 (851)
-+++..|++.+|.++|.++.+.... +..+|..+..+|...|+|..|+++|+...+ .....+..+.++|++++.++|++
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 8899999999999999999987542 556888999999999999999999999875 45567889999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCC
Q 038852 552 EEIERVLNADRWGYAAPVP 570 (851)
Q Consensus 552 ~eA~~ll~~~~~~~~~~p~ 570 (851)
.+|.+.+...+...|.++.
T Consensus 733 ~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 733 QEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHHHHHHHHHhCCccch
Confidence 9999999998888776654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-20 Score=221.98 Aligned_cols=159 Identities=17% Similarity=0.162 Sum_probs=94.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 038852 108 HNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCD 187 (851)
Q Consensus 108 ~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~ 187 (851)
...+..+...|+.++|++++.++.... ..+...+..+..++.+.|++++|+++|+++++..+ .+...+..++.++..
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~l~~ 95 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP--QNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH
Confidence 344555566666666666666655322 33444566666666666666666666666655432 234445566666666
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038852 188 EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANE 267 (851)
Q Consensus 188 ~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~ 267 (851)
.|++++|+..++++++..+. +.. +..++.++...|++++|+..|+++++..+. +...+..++.++...+..++|++
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~--~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPD--KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCC--CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHH
Confidence 66666666666666665544 444 666666666666666666666666665544 55555556666666666666666
Q ss_pred HHHHHH
Q 038852 268 LFDELK 273 (851)
Q Consensus 268 ~~~~~~ 273 (851)
.++++.
T Consensus 172 ~l~~~~ 177 (765)
T PRK10049 172 AIDDAN 177 (765)
T ss_pred HHHhCC
Confidence 665544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.1e-21 Score=212.72 Aligned_cols=302 Identities=16% Similarity=0.197 Sum_probs=136.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhc
Q 038852 183 NTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGAD---SLVYNNLISGFLNL 259 (851)
Q Consensus 183 ~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~~~~Li~~~~~~ 259 (851)
..+...|++++|+..|+++++.++. +..++..++..+...|++++|+++++.+++.....+ ..++..++..|.+.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPE--TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3345556666666666666555433 444555566666666666666666665555322111 13344555555555
Q ss_pred CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhCCCHHHH
Q 038852 260 GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMT----PATCNTLLEVLLKHEKKEEA 335 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~----~~~~~~Li~~~~~~g~~~~A 335 (851)
|++++|+.+|+++.+.... +..++..++.+|.+.|++++|+++|+.+.+.+.... ...+..++..+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDF-AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 5555555555555543221 233344444444444444444444444433322111 01223344444444555555
Q ss_pred HHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHH
Q 038852 336 QALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAE 415 (851)
Q Consensus 336 ~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~ 415 (851)
+++|+++++.. |+ +...+..++.+|.+.|++++|+++|+
T Consensus 200 ~~~~~~al~~~--p~----~~~~~~~la~~~~~~g~~~~A~~~~~----------------------------------- 238 (389)
T PRK11788 200 RALLKKALAAD--PQ----CVRASILLGDLALAQGDYAAAIEALE----------------------------------- 238 (389)
T ss_pred HHHHHHHHhHC--cC----CHHHHHHHHHHHHHCCCHHHHHHHHH-----------------------------------
Confidence 55555444421 11 23344444444444444444444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 038852 416 KLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKD 495 (851)
Q Consensus 416 ~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~ 495 (851)
++.+.+......++..++.+|.+.|++++|+.+|+++.+.+... ..+..++..+.+.|++++|+++|+++++.
T Consensus 239 ----~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~--~~~~~la~~~~~~g~~~~A~~~l~~~l~~- 311 (389)
T PRK11788 239 ----RVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA--DLLLALAQLLEEQEGPEAAQALLREQLRR- 311 (389)
T ss_pred ----HHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Confidence 44432111112234444444445555555555555544433211 12233444455555555555555554443
Q ss_pred CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHH
Q 038852 496 PKPDFLIYDVVVRGLCN---EGLFDMSKDIVDQMMKYGVGITPA 536 (851)
Q Consensus 496 ~~pd~~~~~~ll~a~~~---~g~~~~A~~~~~~m~~~g~~~~~~ 536 (851)
.|+..++..++..+.. .|+.++++.+++++++.++.+++.
T Consensus 312 -~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 312 -HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred -CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 3444444444444332 234555555555555444444443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-21 Score=212.92 Aligned_cols=300 Identities=16% Similarity=0.159 Sum_probs=157.5
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCH
Q 038852 150 YRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGP--SSNTYRHLTKGFVDAGRI 227 (851)
Q Consensus 150 ~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p--~~~~~~~Li~~~~~~g~~ 227 (851)
...|++++|+..|+++++... .+..++..++..|...|++++|+.+++.+++...... +..++..++.+|...|++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDP--ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344445555555555443211 1233444444445555555555555554443221100 012344445555555555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc----hhhHHHHHHHHHHcCCHHHHHHH
Q 038852 228 GEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYD----GVVNATFMEWWFNQGKDKEAMQS 303 (851)
Q Consensus 228 ~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d----~~~~~~li~~~~~~g~~~~A~~l 303 (851)
++|+++|+++++.... +..++..++.+|.+.|++++|+++|+++.+.+...+ ...+..++..+.+.|++++|+++
T Consensus 124 ~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEGDF-AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5555555555443222 344455555555555555555555555544332211 11233444555555666666666
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 038852 304 YKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAG 383 (851)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~ 383 (851)
|+++++.+. .+...+..++.+|.+.|++++|+++|+++.+.+... ...++..++.+|.+.|++++|+.+|+++.
T Consensus 203 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 203 LKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY-----LSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 665555432 233455556666666667777777766666532211 23455666666777777777777777665
Q ss_pred cCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcC
Q 038852 384 THPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLK---VERIDDALELFNRMVESG 460 (851)
Q Consensus 384 ~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~---~g~~~~A~~~~~~m~~~~ 460 (851)
...+ +...+..++..+.+.|++++|+.+|+++++. .|+...++.++..+.. .|+.++++.+|+++++.+
T Consensus 277 ~~~p------~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 277 EEYP------GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HhCC------CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 4422 3334466667777777777777777766654 4666666666665554 346777777777777655
Q ss_pred Cccchh
Q 038852 461 LRVVVS 466 (851)
Q Consensus 461 ~~~~~~ 466 (851)
+.++..
T Consensus 349 ~~~~p~ 354 (389)
T PRK11788 349 LKRKPR 354 (389)
T ss_pred HhCCCC
Confidence 444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-19 Score=215.84 Aligned_cols=421 Identities=10% Similarity=0.065 Sum_probs=319.6
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 137 PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRH 216 (851)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~ 216 (851)
.+.....-.+.+....|+.++|++++.++.... ..+...+..++.++...|++++|+++|+++++..|. +...+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~ 88 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ--NDDYQRG 88 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Confidence 344445556667788999999999999986422 245667999999999999999999999999998766 6778889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCC
Q 038852 217 LTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGK 296 (851)
Q Consensus 217 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~ 296 (851)
++.++...|++++|+.+++++++.... +.. +..++.++...|+.++|+..|+++++.... +..++..++.++...+.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence 999999999999999999999998655 667 889999999999999999999999998776 66777778888999999
Q ss_pred HHHHHHHHHHHHH-----hcCCCCHHHH---HHHHHHHHhCCCH---HHHHHHHHHHHHc-CCCCCCCccCHHHHHHHHH
Q 038852 297 DKEAMQSYKSLME-----RNFRMTPATC---NTLLEVLLKHEKK---EEAQALFEQMLDN-HQPPNIQAVNSDTFNIMVN 364 (851)
Q Consensus 297 ~~~A~~l~~~~~~-----~~~~~~~~~~---~~Li~~~~~~g~~---~~A~~l~~~m~~~-~~~p~~~~~~~~~~~~L~~ 364 (851)
.++|++.++.+.. .....+.... ..++..+...+++ ++|++.++.+++. ...|+............+.
T Consensus 166 ~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 166 SAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 9999998885443 1111111111 1122222333444 7899999998864 2333221101122222234
Q ss_pred HHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHH
Q 038852 365 ECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSP---DVTTFRTLIDAYL 441 (851)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~~~~~Ll~~~~ 441 (851)
++...|++++|+..|+++.......+ .+...+ +..+|...|++++|+.+|++++...... ....+..|+.++.
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P--~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIP--PWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCC--HHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 45677999999999999876532111 123333 5778999999999999999987754322 2456677777889
Q ss_pred HcCCHHHHHHHHHHHHHcCCc-----------cc---hhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 038852 442 KVERIDDALELFNRMVESGLR-----------VV---VSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVV 507 (851)
Q Consensus 442 ~~g~~~~A~~~~~~m~~~~~~-----------~~---~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll 507 (851)
..|++++|+++++++.+.... |+ ...+..++..+...|++++|+++++++.+.... +...+..++
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 999999999999999876421 12 234455778899999999999999999887544 677888899
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCCC
Q 038852 508 RGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPVP 570 (851)
Q Consensus 508 ~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p~ 570 (851)
..+...|++++|++.++++++.. +.+..++..++..+.+.|++++|+.+++++...+|+.+.
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999865 345667777888999999999999999999998887763
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-19 Score=203.45 Aligned_cols=443 Identities=16% Similarity=0.150 Sum_probs=343.4
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
.+++.+.+++...|+++.|...|-+.+.....-.+..+..|+..|.+.|+++.|+..|+++++... -+..+...|+..
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p--~~~etm~iLG~L 385 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP--NNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc--chHHHHHHHHhH
Confidence 468889999999999999999999988665443356677889999999999999999999987643 356778888888
Q ss_pred HHHcC----ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHH
Q 038852 185 YCDEG----KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDML----SRQLGADSLVYNNLISGF 256 (851)
Q Consensus 185 ~~~~g----~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~----~~g~~pd~~~~~~Li~~~ 256 (851)
|+..+ ..++|..++.+.++..++ |...|..+...|...+-+.. +.+|..++ ..+-..-....|.++...
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~--d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPV--DSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 88775 678899999999988766 88999999888876554444 77776655 334445778999999999
Q ss_pred HhcCCHHHHHHHHHHHHhc---CCcc------chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038852 257 LNLGNLEKANELFDELKQR---CLVY------DGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLL 327 (851)
Q Consensus 257 ~~~g~~~~A~~~~~~~~~~---~~~~------d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~ 327 (851)
...|++++|...|+.++.. .... +..+-..+..++-..++++.|.+.|+.+++..+.. +..|..++....
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y-Id~ylRl~~ma~ 541 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY-IDAYLRLGCMAR 541 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh-HHHHHHhhHHHH
Confidence 9999999999999998866 1122 23345667778888899999999999999886421 233444443334
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHh
Q 038852 328 KHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCE 407 (851)
Q Consensus 328 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~ 407 (851)
..+...+|...++.++..+-. +..++..++..+.+..++..|.+-|+.+....... .|..+...|+..|..
T Consensus 542 ~k~~~~ea~~~lk~~l~~d~~------np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~---~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNIDSS------NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK---TDAYSLIALGNVYIQ 612 (1018)
T ss_pred hccCcHHHHHHHHHHHhcccC------CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC---CchhHHHHhhHHHHH
Confidence 457888999999999875433 77899999999999999999999887776553333 377777777776543
Q ss_pred ------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Q 038852 408 ------------NEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNEL 475 (851)
Q Consensus 408 ------------~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~ 475 (851)
.+..++|+.+|.++++... -|...-+.++.+++..|++.+|+.+|..+.+........|.| ++.+|
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lN-lah~~ 690 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLN-LAHCY 690 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeee-HHHHH
Confidence 3457889999999987633 377788889999999999999999999999876544455555 89999
Q ss_pred HHcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH--------------
Q 038852 476 ITKGKVAECAPILTKMGEK-DPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDF-------------- 540 (851)
Q Consensus 476 ~~~g~~~~A~~ll~~m~~~-~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-------------- 540 (851)
...|+|..|+++|+...+. ...-+..+...|.+++.+.|.+.+|.+.+..++..........++.
T Consensus 691 ~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~ 770 (1018)
T KOG2002|consen 691 VEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRL 770 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhc
Confidence 9999999999999997765 4455778899999999999999999999999987654444444443
Q ss_pred ----HHHHHHhcCCHHHHHHHHHhhhhc
Q 038852 541 ----VRETFGKAGRGEEIERVLNADRWG 564 (851)
Q Consensus 541 ----L~~~~~~~G~~~eA~~ll~~~~~~ 564 (851)
+-+.....+.+++|.++|..+...
T Consensus 771 ~k~t~eev~~a~~~le~a~r~F~~ls~~ 798 (1018)
T KOG2002|consen 771 EKRTLEEVLEAVKELEEARRLFTELSKN 798 (1018)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 122333445678888888887653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-18 Score=206.01 Aligned_cols=231 Identities=11% Similarity=0.036 Sum_probs=169.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHH
Q 038852 320 NTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYN 399 (851)
Q Consensus 320 ~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~ 399 (851)
..++.++.. ++.++|+..|.+.+... | +......++.++...|++++|+..|+++..... +...+.
T Consensus 481 ~~LG~~l~~-~~~~eAi~a~~~Al~~~--P-----d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p------~~~a~~ 546 (987)
T PRK09782 481 NRLAKCYRD-TLPGVALYAWLQAEQRQ--P-----DAWQHRAVAYQAYQVEDYATALAAWQKISLHDM------SNEDLL 546 (987)
T ss_pred HHHHHHHHh-CCcHHHHHHHHHHHHhC--C-----chHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC------CcHHHH
Confidence 333333333 45555666666655532 3 222344445555678888888888888754422 233456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcC
Q 038852 400 NIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKG 479 (851)
Q Consensus 400 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g 479 (851)
.++.++.+.|++++|..+|+++++... .+...+..+...+.+.|++++|+..|+++++.++. ...+..+..++.+.|
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~--~~a~~~LA~~l~~lG 623 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS--ANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCC
Confidence 677778888888888888888887532 23334444445555669999999999999987763 555666889999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 480 KVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLN 559 (851)
Q Consensus 480 ~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~ 559 (851)
++++|+..|+++++.... +...+..+..++...|++++|+++|+++++.. +.+..++..++.++.+.|++++|++.|+
T Consensus 624 ~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 624 NVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999988554 66788888889999999999999999999864 3567788889999999999999999999
Q ss_pred hhhhcCCCCC
Q 038852 560 ADRWGYAAPV 569 (851)
Q Consensus 560 ~~~~~~~~~p 569 (851)
+.....|+..
T Consensus 702 ~Al~l~P~~a 711 (987)
T PRK09782 702 LVIDDIDNQA 711 (987)
T ss_pred HHHhcCCCCc
Confidence 9988776554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-18 Score=203.15 Aligned_cols=451 Identities=12% Similarity=0.076 Sum_probs=335.9
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
..+..+....+.|+++.|+..|+++++....-...++ .++..+...|+.++|+.++++++. ...........++..|
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly 112 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAY 112 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHH
Confidence 4567778889999999999999999876533222344 788888899999999999999862 2223444555557789
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKA 265 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 265 (851)
...|++++|+++|+++++.++. |...+..++..+...++.++|++.+++++.... +...+..++..+...++..+|
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~--n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp--~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPT--NPDLISGMIMTQADAGRGGVVLKQATELAERDP--TVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc--chHHHHHHHHHHHhcchHHHH
Confidence 9999999999999999999887 566778889999999999999999999998743 445555555555556777679
Q ss_pred HHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHH------HHHHHHHH---H--hCCC---
Q 038852 266 NELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPAT------CNTLLEVL---L--KHEK--- 331 (851)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~------~~~Li~~~---~--~~g~--- 331 (851)
++.++++++.+.. +...+..++.++.+.|-...|+++.++-.+.- .+.... ...+++.- . ...+
T Consensus 189 L~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 189 LQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 9999999998766 78888899999999999999998876533211 000000 11111110 0 1122
Q ss_pred HHHHHHHHHHHHHcC-CCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCC
Q 038852 332 KEEAQALFEQMLDNH-QPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEM 410 (851)
Q Consensus 332 ~~~A~~l~~~m~~~~-~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~ 410 (851)
.+.|+.-++.++..- ..|.....-..+..-.+.++...|+++++++.|+.+.... ...-..+-..++++|...+.
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~----~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG----YKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC----CCCCHHHHHHHHHHHHhcCC
Confidence 345666666666522 2232111012234456668889999999999999996432 22234567789999999999
Q ss_pred HHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------ccc---hhHHHHH
Q 038852 411 LEEAEKLLREISTKS-----LSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGL-----------RVV---VSFGTKV 471 (851)
Q Consensus 411 ~~~A~~l~~~m~~~g-----~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~-----------~~~---~~~~~~L 471 (851)
.++|+.+|+.+.... ..++......|..+|...+++++|..+++++.+..+ .++ ......+
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~ 422 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL 422 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH
Confidence 999999999997642 122444467889999999999999999999998422 122 2233446
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 038852 472 FNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRG 551 (851)
Q Consensus 472 ~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~ 551 (851)
+..+...|++.+|++.++++...... |......+.+.+...|...+|+++++.+... -+.+..+....+.++...|++
T Consensus 423 a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~ 500 (822)
T PRK14574 423 VQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEW 500 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhH
Confidence 77889999999999999999887655 8889999999999999999999999777765 345566777789999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCC
Q 038852 552 EEIERVLNADRWGYAAPVPP 571 (851)
Q Consensus 552 ~eA~~ll~~~~~~~~~~p~~ 571 (851)
++|.++++++...+|+.+..
T Consensus 501 ~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 501 HQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHHHHhhCCCchhH
Confidence 99999999999988876643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-18 Score=179.01 Aligned_cols=425 Identities=15% Similarity=0.152 Sum_probs=288.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCC--HHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTC-NAIIAAMYRAKRYDDAVALFKYFFDQAD-IVPN--IVSYNNLI 182 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~l~~~~~~~~~-~~pd--~~~~~~Li 182 (851)
+++++..|.....+.+|+..++-+++..+.++.-.+ ..+.+.+.+.+.|.+|+++|+.+++.-. +..+ +...+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 344555555555666666666666655555554322 2355667777888888888887766421 1112 34567777
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CCHHHHH
Q 038852 183 NTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG------------ADSLVYN 250 (851)
Q Consensus 183 ~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~------------pd~~~~~ 250 (851)
..+++.|.+++|+..|+.+.+.. ||..+-..|+.++...|+-++..+.|.+|+..-.. ||....+
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~---pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEA---PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhC---ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 77888999999999999998854 56666667777888889999999999998864322 2222222
Q ss_pred HHH-----HHHHhcC--CHHHHHHHHHHHHhcCCccch---------------------hhHHHHHHHHHHcCCHHHHHH
Q 038852 251 NLI-----SGFLNLG--NLEKANELFDELKQRCLVYDG---------------------VVNATFMEWWFNQGKDKEAMQ 302 (851)
Q Consensus 251 ~Li-----~~~~~~g--~~~~A~~~~~~~~~~~~~~d~---------------------~~~~~li~~~~~~g~~~~A~~ 302 (851)
..+ .-..+.+ +.++++-.-.+++.--+.+|- .+-..-...|.+.|+++.|++
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 211 1111111 122222211122211111110 000111235888999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHH------------------------------------HHHHHhCCCHHHHHHHHHHHHHcC
Q 038852 303 SYKSLMERNFRMTPATCNTL------------------------------------LEVLLKHEKKEEAQALFEQMLDNH 346 (851)
Q Consensus 303 l~~~~~~~~~~~~~~~~~~L------------------------------------i~~~~~~g~~~~A~~l~~~m~~~~ 346 (851)
+++-..+.+-+.....-+.| ......+|++++|.+.|++++..+
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 88877655433211111111 111224688999999999998764
Q ss_pred CCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038852 347 QPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSL 426 (851)
Q Consensus 347 ~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 426 (851)
.. ....+..++..+...|++++|+++|-++...... ++.+...+...|.-..+...|++++...... +
T Consensus 521 as------c~ealfniglt~e~~~~ldeald~f~klh~il~n-----n~evl~qianiye~led~aqaie~~~q~~sl-i 588 (840)
T KOG2003|consen 521 AS------CTEALFNIGLTAEALGNLDEALDCFLKLHAILLN-----NAEVLVQIANIYELLEDPAQAIELLMQANSL-I 588 (840)
T ss_pred hH------HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence 43 4567777888899999999999999887443222 6777888888999999999999999887764 5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 038852 427 SPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVV 506 (851)
Q Consensus 427 ~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~l 506 (851)
..|..++..|++.|-+.|+...|..++-+..+. +.-+..+...|...|+...-+++|+.+|++..- +.|+..-|..+
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlm 665 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLM 665 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHH
Confidence 667889999999999999999999887665543 233455555688888999999999999999765 57899999988
Q ss_pred HHHH-HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 038852 507 VRGL-CNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGR 550 (851)
Q Consensus 507 l~a~-~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~ 550 (851)
+..| .+.|++.+|.++|+...+ .++.+.+.+.+|+++....|.
T Consensus 666 iasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence 8766 568999999999999876 477888899999988887774
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-16 Score=190.14 Aligned_cols=427 Identities=11% Similarity=0.007 Sum_probs=299.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYR-AKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDE 188 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~ 188 (851)
+.+.+.+.+++++|+.++.++++.+ ..+......|..+|.. .++ ++|+.+++.. ++.|...+..++..|.+.
T Consensus 188 ~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~-----lk~d~~l~~ala~~yi~~ 260 (987)
T PRK09782 188 LLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG-----IFTDPQSRITYATALAYR 260 (987)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh-----cccCHHHHHHHHHHHHHC
Confidence 3778888999999999999988776 3445566777777777 366 7777776543 225778888999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHH------------------------------HHHHHHHc--------------
Q 038852 189 GKVDEGMNVFRRIIETAPVGPSSNTYRH------------------------------LTKGFVDA-------------- 224 (851)
Q Consensus 189 g~~~~A~~l~~~~~~~~~~~p~~~~~~~------------------------------Li~~~~~~-------------- 224 (851)
|+.++|.++++++.......|+..+|.. ++..+.+.
T Consensus 261 G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (987)
T PRK09782 261 GEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLP 340 (987)
T ss_pred CCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 9999999888876443222121111110 12222222
Q ss_pred -------------------------------------------------CCHHHHHHHHHHHHhc-C-CCCCHHHHHHHH
Q 038852 225 -------------------------------------------------GRIGEAVDLLRDMLSR-Q-LGADSLVYNNLI 253 (851)
Q Consensus 225 -------------------------------------------------g~~~~A~~l~~~m~~~-g-~~pd~~~~~~Li 253 (851)
|+.++|..+|+..... + ...+......|+
T Consensus 341 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 341 ANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred cchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 3344444444444331 0 111222333455
Q ss_pred HHHHhcCC---HHHHHHH----------------------HHHHHhc-CC-cc--chhhHHHHHHHHHHcCCHHHHHHHH
Q 038852 254 SGFLNLGN---LEKANEL----------------------FDELKQR-CL-VY--DGVVNATFMEWWFNQGKDKEAMQSY 304 (851)
Q Consensus 254 ~~~~~~g~---~~~A~~~----------------------~~~~~~~-~~-~~--d~~~~~~li~~~~~~g~~~~A~~l~ 304 (851)
..|.+.+. ..+++.+ ++.+... .. .. +...+..++.++.. ++.++|+..|
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 55554443 1222111 1111111 00 11 45566777777766 7888999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 038852 305 KSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGT 384 (851)
Q Consensus 305 ~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~ 384 (851)
.+.....+ +......++.++...|++++|+..|+++... .+ +...+..++.++.+.|++++|+.+|+++..
T Consensus 500 ~~Al~~~P--d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p-----~~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 500 LQAEQRQP--DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM-----SNEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred HHHHHhCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC-----CcHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88887764 3333444555667899999999999998653 22 334567888999999999999999999977
Q ss_pred CCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccc
Q 038852 385 HPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVV 464 (851)
Q Consensus 385 ~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~ 464 (851)
..+. +...+..+...+.+.|++++|+..|++.++. .|+...|..++.++.+.|++++|+..|+++++.++...
T Consensus 571 l~P~-----~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~ 643 (987)
T PRK09782 571 RGLG-----DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS 643 (987)
T ss_pred cCCc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 5433 3344444555555679999999999999975 46788999999999999999999999999999875544
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038852 465 VSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRET 544 (851)
Q Consensus 465 ~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~ 544 (851)
..+..+..++...|++++|+++|+++++.... +...+..+..++...|++++|+..|+++++.. +....+.....+.
T Consensus 644 -~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~ 720 (987)
T PRK09782 644 -NYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQ 720 (987)
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHH
Confidence 45556888999999999999999999987554 67888999999999999999999999999865 2344566667888
Q ss_pred HHhcCCHHHHHHHHHhhhh
Q 038852 545 FGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 545 ~~~~G~~~eA~~ll~~~~~ 563 (851)
+.+..+++.|.+-++....
T Consensus 721 ~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 721 NQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 8888888888888877543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-16 Score=184.59 Aligned_cols=412 Identities=12% Similarity=0.065 Sum_probs=300.7
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 038852 148 AMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRI 227 (851)
Q Consensus 148 ~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~ 227 (851)
..++.|+++.|+..|+++++.....+ ...+ .++..+...|+.++|+.++++++. +..........++..|...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~-~av~-dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQS-GQVD-DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccch-hhHH-HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCH
Confidence 46799999999999999987543221 1233 888888899999999999999983 3323555555557799999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 228 GEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSL 307 (851)
Q Consensus 228 ~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~ 307 (851)
++|+++|+++++.... +...+..++..|...++.++|++.++++...... ...+..++..+...++..+|++.|+++
T Consensus 119 d~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPT--VQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9999999999999777 6788888899999999999999999999887554 344455555555577777799999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-CCccCHHHHHHHHHHH---H--HcC---ChHHHHHH
Q 038852 308 MERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPN-IQAVNSDTFNIMVNEC---F--KHG---KFSEAIET 378 (851)
Q Consensus 308 ~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~~~~~~L~~~~---~--~~g---~~~~A~~~ 378 (851)
++.++ .+...+..++.++.+.|-...|+++.++-.+. +.+. ...+.......+++.- . ... -.|.|+.-
T Consensus 196 l~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 196 VRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 99975 35567777899999999999999877753321 1110 0000000111111100 0 111 24556666
Q ss_pred HHHhccCCCCCCC-ccC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 379 FKKAGTHPKSKPF-AMD-VAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRM 456 (851)
Q Consensus 379 ~~~~~~~~~~~~~-~~d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m 456 (851)
++.+.......+- .++ ..+..-.+-++...|+++++++.|+.|...+.+.-..+-..++++|...+..++|+.+|+.+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 6666542222110 001 22334556678889999999999999998876655668889999999999999999999999
Q ss_pred HHcCC-----ccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCC-------------CCCCHHH-HHHHHHHHHhcCChH
Q 038852 457 VESGL-----RVVVSFGTKVFNELITKGKVAECAPILTKMGEKD-------------PKPDFLI-YDVVVRGLCNEGLFD 517 (851)
Q Consensus 457 ~~~~~-----~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~-------------~~pd~~~-~~~ll~a~~~~g~~~ 517 (851)
..... .++......|+.+|...+++++|..+++++.+.- ..||-.. +..++..+...|++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 77542 2234334678999999999999999999998732 1233333 344566778899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCC
Q 038852 518 MSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPV 569 (851)
Q Consensus 518 ~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p 569 (851)
+|++.+++++... +-+..+...+++++...|+..+|+++++......|+..
T Consensus 434 ~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~ 484 (822)
T PRK14574 434 TAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSL 484 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccH
Confidence 9999999998754 57888999999999999999999999988777665543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-16 Score=164.77 Aligned_cols=418 Identities=13% Similarity=0.132 Sum_probs=279.5
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---------------HcCChhHHHHHH---HHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMY---------------RAKRYDDAVALF---KYFF 166 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~---------------~~g~~~~A~~l~---~~~~ 166 (851)
.+...+..+++....++.|...++..... -..|..+...|. +...+..-...| ++-+
T Consensus 79 ~~~y~laks~fd~kEf~Raa~fL~~~~s~-----k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~l 153 (559)
T KOG1155|consen 79 KDIYLLAKSYFDCKEFERAAFFLQNCKSK-----KSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPL 153 (559)
T ss_pred cchhhhHhhhhhhHHHHHHHHHHHhcchH-----HHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHH
Confidence 45677888888899999888777664421 111111111111 111111111111 1111
Q ss_pred H--cCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH-------------------------
Q 038852 167 D--QADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTK------------------------- 219 (851)
Q Consensus 167 ~--~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~------------------------- 219 (851)
+ ..+...|...+...+.++.+.|..+.|++.|.+.+...|. .-.+|..|..
T Consensus 154 e~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~--~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 154 ESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPW--FWSAWLELSELITDIEILSILVVGLPSDMHWMKKF 231 (559)
T ss_pred HHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCc--chHHHHHHHHhhchHHHHHHHHhcCcccchHHHHH
Confidence 1 1233456666677777788889999999999988876554 3334433322
Q ss_pred ----HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc--cchhhHHHHHHHHHH
Q 038852 220 ----GFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLV--YDGVVNATFMEWWFN 293 (851)
Q Consensus 220 ----~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~--~d~~~~~~li~~~~~ 293 (851)
++-.....++++.-.......|+.-+...-+..+.+.....|++.|+.+|+++.+.++- -|..+|..++ |.+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHH
Confidence 23333445566666666666666655555555666667777888888888888776432 2455555554 333
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChH
Q 038852 294 QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFS 373 (851)
Q Consensus 294 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~ 373 (851)
..+-+.+. +-..+...+ +.-..|+..+++-|.-.++.++|+.+|+++++.+.. ...+|+.++.-|...++..
T Consensus 310 ~~~skLs~-LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~------~~~aWTLmGHEyvEmKNt~ 381 (559)
T KOG1155|consen 310 NDKSKLSY-LAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK------YLSAWTLMGHEYVEMKNTH 381 (559)
T ss_pred hhhHHHHH-HHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc------hhHHHHHhhHHHHHhcccH
Confidence 32222111 111111111 122357777888888889999999999999985544 5779999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038852 374 EAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELF 453 (851)
Q Consensus 374 ~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~ 453 (851)
.|++.|+.+.+..+. |...|..|+.+|.-.+...-|+-.|++..... +-|...|.+|+.+|.+.++.++|++.|
T Consensus 382 AAi~sYRrAvdi~p~-----DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 382 AAIESYRRAVDINPR-----DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred HHHHHHHHHHhcCch-----hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999888776 89999999999999999999999999998753 347889999999999999999999999
Q ss_pred HHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHH
Q 038852 454 NRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEK----DPKPDFL--IYDVVVRGLCNEGLFDMSKDIVDQMM 527 (851)
Q Consensus 454 ~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~----~~~pd~~--~~~~ll~a~~~~g~~~~A~~~~~~m~ 527 (851)
++++..+-. ....+..|+..|.+.++..+|...|++.++. |..-+.. ....|..-+.+.+++++|..+.....
T Consensus 456 krai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 456 KRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 999987733 4455566899999999999999998887662 3332322 22234555677888888877776665
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhc
Q 038852 528 KYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWG 564 (851)
Q Consensus 528 ~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~ 564 (851)
+. .-..+||..++++++..
T Consensus 535 ~~------------------~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 535 KG------------------ETECEEAKALLREIRKI 553 (559)
T ss_pred cC------------------CchHHHHHHHHHHHHHh
Confidence 43 23567888888887653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9e-17 Score=165.69 Aligned_cols=399 Identities=17% Similarity=0.163 Sum_probs=280.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRIRPT----VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
....+++.+++.+|++.++.++..-...+ ..+.+.+...+.+.|.|++|+..|+..++. .||..+-..|+-++
T Consensus 243 igni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~ 319 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICA 319 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhh
Confidence 34456778899999999998876543222 345666777778999999999999998774 37877777777778
Q ss_pred HHcCChHHHHHHHHHHHHhCCC-----------CCCHHHHHHHH-----HHHHHcC--CHHHHHHHHHHHHhcCCCCCHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPV-----------GPSSNTYRHLT-----KGFVDAG--RIGEAVDLLRDMLSRQLGADSL 247 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~-----------~p~~~~~~~Li-----~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~ 247 (851)
...|+-++..+.|.+|+...+. .|+....+..| +-..+.+ +-++++-.-.+++.--+.||-.
T Consensus 320 f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa 399 (840)
T KOG2003|consen 320 FAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA 399 (840)
T ss_pred eecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh
Confidence 8889999999999999865321 12322222222 1111111 1222222222222211222210
Q ss_pred ---------------------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHH-------------------
Q 038852 248 ---------------------VYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATF------------------- 287 (851)
Q Consensus 248 ---------------------~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l------------------- 287 (851)
.-.+-..-|.+.|+++.|+++++-+.+.+-.......+.|
T Consensus 400 ~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqya 479 (840)
T KOG2003|consen 400 AGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYA 479 (840)
T ss_pred cccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHH
Confidence 0111234567888999888888776654322111111111
Q ss_pred -----------------HHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 038852 288 -----------------MEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPN 350 (851)
Q Consensus 288 -----------------i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 350 (851)
.+..+..|++++|.+.|++++..+.......|| +...+...|++++|+++|-++...-..
T Consensus 480 d~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~n-- 556 (840)
T KOG2003|consen 480 DIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLN-- 556 (840)
T ss_pred HHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHh--
Confidence 112234689999999999999887654444555 566678899999999999887543222
Q ss_pred CCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038852 351 IQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDV 430 (851)
Q Consensus 351 ~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 430 (851)
+..++..++..|....+...|++++..+....+. |..+...|.+.|-+.|+-..|+..+-+-.+. +.-+.
T Consensus 557 ----n~evl~qianiye~led~aqaie~~~q~~slip~-----dp~ilskl~dlydqegdksqafq~~ydsyry-fp~ni 626 (840)
T KOG2003|consen 557 ----NAEVLVQIANIYELLEDPAQAIELLMQANSLIPN-----DPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNI 626 (840)
T ss_pred ----hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC-----CHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcch
Confidence 7889999999999999999999999998766555 8899999999999999999999887766543 56688
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccc-hhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038852 431 TTFRTLIDAYLKVERIDDALELFNRMVESGLRVV-VSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRG 509 (851)
Q Consensus 431 ~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a 509 (851)
.+...|+..|....-+++|+.+|+++.-. .|+ ..|-.++..|+.+.|++.+|+++|+...++ +.-|...+..|++.
T Consensus 627 e~iewl~ayyidtqf~ekai~y~ekaali--qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri 703 (840)
T KOG2003|consen 627 ETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRI 703 (840)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHH
Confidence 99999999999999999999999998764 344 455556777888999999999999998776 44488888889999
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 038852 510 LCNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 510 ~~~~g~~~~A~~~~~~m~~ 528 (851)
|...|. .++.++-+++.+
T Consensus 704 ~~dlgl-~d~key~~klek 721 (840)
T KOG2003|consen 704 AGDLGL-KDAKEYADKLEK 721 (840)
T ss_pred hccccc-hhHHHHHHHHHH
Confidence 888875 445666555543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.2e-16 Score=172.04 Aligned_cols=376 Identities=13% Similarity=0.142 Sum_probs=290.4
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
..+...++.+...|++++|..++.++++.. ..+...|..|..+|-..|+.++++..+-.+-.. .+.|...|..+...
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 456677788888899999999999999876 456788999999999999999999887765333 33467889999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH----HHHHHHHHhcC
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVY----NNLISGFLNLG 260 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~----~~Li~~~~~~g 260 (851)
....|+++.|.-+|.+++..+|. +...+..-+..|-+.|+...|.+.|.++.......|..-+ ..++..|...+
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~--n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPS--NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998766 7777777888999999999999999999988653333322 33566677888
Q ss_pred CHHHHHHHHHHHHhc-CCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHH--------------------
Q 038852 261 NLEKANELFDELKQR-CLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATC-------------------- 319 (851)
Q Consensus 261 ~~~~A~~~~~~~~~~-~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~-------------------- 319 (851)
+-+.|.+.++..... +-..+...++.++.+|.+...++.|..............|..-|
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 889999999988763 22346678889999999999999999998887762222222111
Q ss_pred ------HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCcc
Q 038852 320 ------NTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAM 393 (851)
Q Consensus 320 ------~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 393 (851)
..++-++...+..+....+.......++.+.. +...|..++.+|.+.|++++|+++|..+.......
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d---~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~---- 447 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSD---DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ---- 447 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhh---hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc----
Confidence 12444555556666666666666666665543 67889999999999999999999999997664432
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------Cccch
Q 038852 394 DVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESG--------LRVVV 465 (851)
Q Consensus 394 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~--------~~~~~ 465 (851)
+...|..++.+|...|.+++|...|++++... +-+...-..|...+.+.|+.++|.++++.+..-+ ..+..
T Consensus 448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ 526 (895)
T KOG2076|consen 448 NAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPER 526 (895)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHH
Confidence 57789999999999999999999999998752 2245566778888999999999999999976433 22344
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 038852 466 SFGTKVFNELITKGKVAECAPILTKMGE 493 (851)
Q Consensus 466 ~~~~~L~~~~~~~g~~~~A~~ll~~m~~ 493 (851)
.+.......|...|+.++-+++...|+.
T Consensus 527 ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 527 RILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444566778889998887777666654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-16 Score=163.88 Aligned_cols=400 Identities=15% Similarity=0.157 Sum_probs=275.9
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPT-VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLIN 183 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~ 183 (851)
.+.+..+.+.++|++++|++.+..++.. .|| ...|.....+|...|+|++.++.-.++++ +.|+ +..++.-..
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALE---l~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALE---LNPDYVKALLRRAS 191 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh---cCcHHHHHHHHHHH
Confidence 4566778888999999999999998854 455 66777788888888999998888888766 3455 456777777
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHH--------
Q 038852 184 TYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ--LGADSLVYNNLI-------- 253 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~~~~~Li-------- 253 (851)
++...|++++|+.-+.-..-.+++. |. ....++.-..+.--..++.+.|. +.+ +-|......+..
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~-n~-s~~~~~eR~Lkk~a~~ka~e~~k---~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQ-NA-SIEPMAERVLKKQAMKKAKEKLK---ENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcc-cc-hhHHHHHHHHHHHHHHHHHHhhc---ccCCCCCCcHHHHHHHHhhcccccc
Confidence 8888888888765444332222221 11 11111111111111111222221 111 112222111111
Q ss_pred ---------------HHH----Hhc-CCHHHHHHHHHHHHhc---CCcc---c------hhhHHHHHHHHHHcCCHHHHH
Q 038852 254 ---------------SGF----LNL-GNLEKANELFDELKQR---CLVY---D------GVVNATFMEWWFNQGKDKEAM 301 (851)
Q Consensus 254 ---------------~~~----~~~-g~~~~A~~~~~~~~~~---~~~~---d------~~~~~~li~~~~~~g~~~~A~ 301 (851)
.++ ... ..+.+|...+.+-... .... | .......+..+.-+|+...|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 111 110 1234444444332211 0111 1 223333344566789999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 038852 302 QSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKK 381 (851)
Q Consensus 302 ~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 381 (851)
+.|+.+++.+..++. .|..+..+|....+.++.+..|.++.+. .|. |..+|..-+.++.-.+++++|+.-|++
T Consensus 347 ~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~----n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 347 EDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDL--DPE----NPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred hhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhc--CCC----CCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999998876553 3778889999999999999999999884 444 889999999999999999999999999
Q ss_pred hccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 038852 382 AGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGL 461 (851)
Q Consensus 382 ~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~ 461 (851)
+....+. ++..|.-+..+..+.+.+++++..|++.+++ ++....+|+..+.++...+++++|++.|+.+++...
T Consensus 420 ai~L~pe-----~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 420 AISLDPE-----NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HhhcChh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 9888776 7888888888888999999999999999986 555688999999999999999999999999998654
Q ss_pred cc-----ch-hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038852 462 RV-----VV-SFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKY 529 (851)
Q Consensus 462 ~~-----~~-~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~ 529 (851)
.- +. .+....+..+--.+++..|+++++++++.+.+ ....|..|...-...|+.++|+++|++....
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 31 11 11111112222358999999999999998766 5678899999999999999999999998753
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-14 Score=155.83 Aligned_cols=422 Identities=12% Similarity=0.072 Sum_probs=209.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 038852 118 GDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNV 197 (851)
Q Consensus 118 g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l 197 (851)
.+.+.|+.++.+++.. +..+...| -+|.+..-|+.|.++++++.+. +..+...|.+-...-...|+.+...++
T Consensus 390 E~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 390 EEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred cChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 3444455555555432 12233333 2445566677777777776442 445566666666656666777777776
Q ss_pred HHHHHH---hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 198 FRRIIE---TAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGAD--SLVYNNLISGFLNLGNLEKANELFDEL 272 (851)
Q Consensus 198 ~~~~~~---~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~Li~~~~~~g~~~~A~~~~~~~ 272 (851)
+++.+. .+++..+...|..-+..|-+.|..-.+..+....+..|+.-. ..||..-...|.+.+.++-|+.+|..+
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 666532 345555666666666666666666666666666666554411 245666666666666666666666665
Q ss_pred HhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCC
Q 038852 273 KQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQ 352 (851)
Q Consensus 273 ~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 352 (851)
+..... +..+|...+..-...|..++...+|.+++..-++ ....|...+..+-..|+...|..++..+.+....
T Consensus 543 lqvfp~-k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn---- 616 (913)
T KOG0495|consen 543 LQVFPC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN---- 616 (913)
T ss_pred Hhhccc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC----
Confidence 554333 3444444444444445555555555554444322 2233444444444445555555555554443221
Q ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHh---------------------------------ccCCCCCCCccCHHHHH
Q 038852 353 AVNSDTFNIMVNECFKHGKFSEAIETFKKA---------------------------------GTHPKSKPFAMDVAGYN 399 (851)
Q Consensus 353 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~---------------------------------~~~~~~~~~~~d~~~~~ 399 (851)
+..+|...+........+++|..+|.++ +...+. -...|.
T Consensus 617 --seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-----f~Kl~l 689 (913)
T KOG0495|consen 617 --SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-----FHKLWL 689 (913)
T ss_pred --cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-----hHHHHH
Confidence 3444444444444445555555555444 433332 223344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcC
Q 038852 400 NIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKG 479 (851)
Q Consensus 400 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g 479 (851)
.+...+...++++.|.+.|..-.+. +.-..-.|..|...-.+.|.+.+|..+|++..-.+++....|.. .+++-.+.|
T Consensus 690 mlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle-~Ir~ElR~g 767 (913)
T KOG0495|consen 690 MLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLE-SIRMELRAG 767 (913)
T ss_pred HHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHH-HHHHHHHcC
Confidence 4444444444444444444433322 22223344444444445555555555555555555443333332 445555555
Q ss_pred CHHHHHHHHHHHhhCCC-----------------------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038852 480 KVAECAPILTKMGEKDP-----------------------------KPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG 530 (851)
Q Consensus 480 ~~~~A~~ll~~m~~~~~-----------------------------~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g 530 (851)
+.+.|..++.+++..-. .-|...+..+...|....++++|++.|.+.++.+
T Consensus 768 n~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 768 NKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred CHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 55555555554433210 1122333334444444445555555555555433
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 038852 531 VGITPALQDFVRETFGKAGRGEEIERVLNADR 562 (851)
Q Consensus 531 ~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~ 562 (851)
....+++..+...+.+.|.-++-.+++++..
T Consensus 848 -~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 848 -PDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred -CccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 1223344444445555555555555555443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.5e-16 Score=172.77 Aligned_cols=379 Identities=13% Similarity=0.115 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTK 219 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~ 219 (851)
.......+.+...|++++|.+++.++++... .+...|..|+.+|-..|+.+++...+-.+-..++. |...|..+..
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~--d~e~W~~lad 215 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK--DYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC--ChHHHHHHHH
Confidence 3334444445555777777777777776543 34566777777777777777777766666555544 5567777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhh----HHHHHHHHHHcC
Q 038852 220 GFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVV----NATFMEWWFNQG 295 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~----~~~li~~~~~~g 295 (851)
.....|+++.|.-+|.+++..... +...+..-+..|-+.|+...|.+.|.++.......|..- ...++..|...+
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 777777777777777777776544 555555666777777777777777777776655323222 223344455566
Q ss_pred CHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCC----------------------
Q 038852 296 KDKEAMQSYKSLMERN-FRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQ---------------------- 352 (851)
Q Consensus 296 ~~~~A~~l~~~~~~~~-~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~---------------------- 352 (851)
+-+.|++.++...... -..+...++.++..|.+...++.|......+......+|..
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 6677777776666522 22344556667777777777777777766666522222110
Q ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038852 353 AVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTT 432 (851)
Q Consensus 353 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~ 432 (851)
..+..+ ..+..++.+.+..+....+........ ....-+...|..+.++|...|++++|+++|..+......-+..+
T Consensus 375 s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n--~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 375 SYDLRV-IRLMICLVHLKERELLEALLHFLVEDN--VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred Cccchh-HhHhhhhhcccccchHHHHHHHHHHhc--CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 011111 122222223332222222222222211 11222455566666666666666666666666665444444556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCC--------CCCCHHHHH
Q 038852 433 FRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKD--------PKPDFLIYD 504 (851)
Q Consensus 433 ~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~--------~~pd~~~~~ 504 (851)
|..++.+|...|.+++|+..|++++...+.... .-..|...|...|+.++|++.++.+..-+ ..++.....
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D-~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILAPDNLD-ARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILA 530 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh-hhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence 666666666666666666666666655432222 22235556666666666666666644221 122233333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 038852 505 VVVRGLCNEGLFDMSKDIVDQMM 527 (851)
Q Consensus 505 ~ll~a~~~~g~~~~A~~~~~~m~ 527 (851)
.....+...|+.++-+++...|+
T Consensus 531 ~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 531 HRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444455555555444444444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-14 Score=154.92 Aligned_cols=402 Identities=10% Similarity=0.029 Sum_probs=319.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH---cCCCCCCH----------
Q 038852 109 NRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFD---QADIVPNI---------- 175 (851)
Q Consensus 109 ~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~---~~~~~pd~---------- 175 (851)
.+..+|.+..-|+.|..++.++.. .++.+..+|..-...--.+|+.+...+++++.+. .+|+..+.
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 455677788889999999988764 4577888887777766788988888888877643 23333332
Q ss_pred ---------------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 038852 176 ---------------------------VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIG 228 (851)
Q Consensus 176 ---------------------------~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~ 228 (851)
.+|+.-...|.+.+.++-|+.+|..++...+. +...|..++..-...|..+
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~--k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC--KKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHhcCcHH
Confidence 23444455566666777778888888777655 6667777777777788888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 229 EAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLM 308 (851)
Q Consensus 229 ~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~ 308 (851)
+-..+|.+++..-.+ ....|...+..+...||+..|+.++..+.+.+.. +..+|...+.....+..+++|..+|.+..
T Consensus 568 sl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 568 SLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 888888888887544 6677888888888999999999999999988777 78899999999999999999999999888
Q ss_pred HhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCC
Q 038852 309 ERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKS 388 (851)
Q Consensus 309 ~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~ 388 (851)
... ++..+|..-+......++.++|++++++.++. -|+ -...|..++..+...++++.|.+.|..-....+.
T Consensus 646 ~~s--gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~----f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~ 717 (913)
T KOG0495|consen 646 SIS--GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPD----FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN 717 (913)
T ss_pred ccC--CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCc----hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC
Confidence 754 45677777777777889999999999999985 333 4678999999999999999999999887655444
Q ss_pred CCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-----
Q 038852 389 KPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRV----- 463 (851)
Q Consensus 389 ~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~----- 463 (851)
.+-.|..|.+.-.+.|.+-.|..+|++...++.+ |...|...|.+-.+.|+.+.|..++.+++......
T Consensus 718 -----~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWa 791 (913)
T KOG0495|consen 718 -----SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWA 791 (913)
T ss_pred -----CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHH
Confidence 6777988888888899999999999999877544 78899999999999999999999999998754332
Q ss_pred ------------------------chhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 038852 464 ------------------------VVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMS 519 (851)
Q Consensus 464 ------------------------~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A 519 (851)
+......+...|....++++|.+.|++.++.+.. +..+|..+...+...|.-+.-
T Consensus 792 EaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~ 870 (913)
T KOG0495|consen 792 EAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQ 870 (913)
T ss_pred HHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHH
Confidence 2223334555666677899999999999988655 667888899999999999999
Q ss_pred HHHHHHHHHcC
Q 038852 520 KDIVDQMMKYG 530 (851)
Q Consensus 520 ~~~~~~m~~~g 530 (851)
.+++++.....
T Consensus 871 kev~~~c~~~E 881 (913)
T KOG0495|consen 871 KEVLKKCETAE 881 (913)
T ss_pred HHHHHHHhccC
Confidence 99999988654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-14 Score=151.14 Aligned_cols=432 Identities=11% Similarity=0.058 Sum_probs=332.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHHcCChHHH
Q 038852 116 RAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNI-VSYNNLINTYCDEGKVDEG 194 (851)
Q Consensus 116 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~-~~~~~Li~~~~~~g~~~~A 194 (851)
..+++..|..+|++++..+ ..+...|...+.+-.+++.+..|..++++++... |-+ ..|...+.+--..|++..|
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l---PRVdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL---PRVDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc---chHHHHHHHHHHHHHHhcccHHH
Confidence 4567888999999999766 5578889999999999999999999999997642 333 3566667667788999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 195 MNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 195 ~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
..+|++-++ ..|+..+|++.|+.-.+-+.++.|..+|++.+-. .|++.+|...+..-.+.|++..|..+|+.+++
T Consensus 161 RqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 161 RQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 999999987 5789999999999999999999999999999865 47999999999999999999999999998876
Q ss_pred cC--CccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhCCCHHHHHH--------HHHHHH
Q 038852 275 RC--LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMT-PATCNTLLEVLLKHEKKEEAQA--------LFEQML 343 (851)
Q Consensus 275 ~~--~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~-~~~~~~Li~~~~~~g~~~~A~~--------l~~~m~ 343 (851)
.- -..+..++..++..-.++..++.|.-+|+-+++.-++.. ...|..+...--+.|+.....+ -|+.++
T Consensus 236 ~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 236 FLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 42 112455666677777778899999999999988754432 2344444444444566443332 244555
Q ss_pred HcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHH--------HHhcCCHHHHH
Q 038852 344 DNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIAR--------YCENEMLEEAE 415 (851)
Q Consensus 344 ~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~--------~~~~g~~~~A~ 415 (851)
..+.. |.++|...+......|+.+...++|++++...+... .-..|...|-. -....|.+.+.
T Consensus 316 ~~np~------nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~---ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 316 SKNPY------NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPAS---EKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred HhCCC------CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchh---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 54332 788999999999999999999999999876433211 22223222211 13478999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 416 KLLREISTKSLSPDVTTFRTL----IDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKM 491 (851)
Q Consensus 416 ~l~~~m~~~g~~pd~~~~~~L----l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m 491 (851)
++|...++. ++...+||..+ +....+..++..|.+++..++... |-..++...+..-...+.+|.+..+|++.
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c--PK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC--PKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC--CchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999874 44445555444 444457889999999999887654 45555556667777889999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCC
Q 038852 492 GEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG-VGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPV 569 (851)
Q Consensus 492 ~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p 569 (851)
++-+.. |..+|......-...|+.+.|..+|+.++... +.....++...++.-...|.+++|..+++.+........
T Consensus 464 le~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 464 LEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred HhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 998766 88899999988899999999999999998643 334555667788888999999999999999987665433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-15 Score=156.71 Aligned_cols=398 Identities=11% Similarity=0.066 Sum_probs=272.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTK 219 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~ 219 (851)
.+...++-|++.|+|++|+++|.++++. .|| .+.|..+..+|...|+|++.++...++++.+|. -+.++.....
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~--Y~KAl~RRA~ 191 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD--YVKALLRRAS 191 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH--HHHHHHHHHH
Confidence 3455677889999999999999999874 466 788999999999999999999999999997765 5667888888
Q ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CccchhhHHH----------
Q 038852 220 GFVDAGRIGEAVDLLRDMLS-RQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRC--LVYDGVVNAT---------- 286 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~-~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~--~~~d~~~~~~---------- 286 (851)
++-..|++++|+.-+.-..- .|+. |..+--.+=+.+-+.+ ..++.+.|+ +.+ +.|.......
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~a-~~ka~e~~k---~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKKQA-MKKAKEKLK---ENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHHH-HHHHHHhhc---ccCCCCCCcHHHHHHHHhhcccccc
Confidence 88899999988754433222 2222 2221111111111111 122222222 011 1111111111
Q ss_pred -------------HHHH----HHH-cCCHHHHHHHHHHHHHhc---CC---CC------HHHHHHHHHHHHhCCCHHHHH
Q 038852 287 -------------FMEW----WFN-QGKDKEAMQSYKSLMERN---FR---MT------PATCNTLLEVLLKHEKKEEAQ 336 (851)
Q Consensus 287 -------------li~~----~~~-~g~~~~A~~l~~~~~~~~---~~---~~------~~~~~~Li~~~~~~g~~~~A~ 336 (851)
+... +.. ...+.+|...+.+-.... .. .| ..+.+..+..+.-.|+...|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 1111 111 113444444443322110 01 11 122233333445678999999
Q ss_pred HHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHH
Q 038852 337 ALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEK 416 (851)
Q Consensus 337 ~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 416 (851)
..|+.++.....+ ...|..++.+|....+-++....|.++...++. +..+|..-..++.-.+++++|..
T Consensus 347 ~d~~~~I~l~~~~------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-----n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 347 EDFDAAIKLDPAF------NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-----NPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhHHHHHhcCccc------chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-----CCchhHhHHHHHHHHHHHHHHHH
Confidence 9999999865543 445999999999999999999999999888777 66668788888888999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 038852 417 LLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDP 496 (851)
Q Consensus 417 l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~ 496 (851)
-|++.++.... ++..|.-+..+..+.+.++++...|++++++- ......|+....++...+++++|++.|++.++...
T Consensus 416 DF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99999976322 56778888888889999999999999999874 44567778889999999999999999999987633
Q ss_pred C-----CCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038852 497 K-----PDFLIYD--VVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 497 ~-----pd~~~~~--~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~ 563 (851)
+ .+...+. .++. +--.+++..|+++++++++.+. .....+..|+.+....|+.++|+++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 1222221 1221 1234899999999999998652 2344566799999999999999999998643
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8e-14 Score=150.43 Aligned_cols=499 Identities=12% Similarity=0.133 Sum_probs=319.0
Q ss_pred hHHHHHhhccCcccccccchHHHHHHhhcCCCCCCCCCCccccccccCCCHHHHHHHHHHhhccccCCCCCccCCCCCCC
Q 038852 3 LLRLLLRSSNRHHHRLSFSLLHQFHNLALNPNSPNPNLNPISARGYAFSSAEEAAAERRRRKRRLRIEPPLHAIRPNPTQ 82 (851)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (851)
.+.+|+..+.++++|..|. ++|..-|-+-+..+|+..++...-.+.|.-+++.+||-.....
T Consensus 108 Ylq~l~~Q~~iT~tR~tfd-----rALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P------------- 169 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFD-----RALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP------------- 169 (835)
T ss_pred HHHHHHhcchHHHHHHHHH-----HHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH-------------
Confidence 3567788888888887765 5555567777888999998888888888888888876655421
Q ss_pred CCCCCCCCCCCCCccccccCCCccHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------------------------
Q 038852 83 PPPRDPNAPRLPDTTSALVGPRLNLHNRVQSLIRAGDLDAASYLARQAVFS----------------------------- 133 (851)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~----------------------------- 133 (851)
.....-|..|++.+++++|.+.+..++..
T Consensus 170 ----------------------~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~ 227 (835)
T KOG2047|consen 170 ----------------------EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKV 227 (835)
T ss_pred ----------------------HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchh
Confidence 01233445555555555555544443321
Q ss_pred -----------CC--CCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC---------
Q 038852 134 -----------RI--RPT--VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG--------- 189 (851)
Q Consensus 134 -----------~~--~~~--~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g--------- 189 (851)
|+ -+| ...|+.|.+.|.+.|++++|..+|++.+..- -.+.-|..+.++|+...
T Consensus 228 ~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v---~tvrDFt~ifd~Ya~FEE~~~~~~me 304 (835)
T KOG2047|consen 228 QSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV---MTVRDFTQIFDAYAQFEESCVAAKME 304 (835)
T ss_pred cccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh---eehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 11 112 3467777777777777777777777776532 23334555555554311
Q ss_pred -------------ChHHHHHHHHHHHHhCCCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 038852 190 -------------KVDEGMNVFRRIIETAPVG----------PSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA-- 244 (851)
Q Consensus 190 -------------~~~~A~~l~~~~~~~~~~~----------p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p-- 244 (851)
+++-.+.-|+.+++..+.- -++..|...+.. ..|+..+-+..|.++++. +.|
T Consensus 305 ~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~k 381 (835)
T KOG2047|consen 305 LADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKK 381 (835)
T ss_pred hhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCccc
Confidence 1222233344433332211 123333333322 246677777888887764 222
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----
Q 038852 245 ----DSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYD---GVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR---- 313 (851)
Q Consensus 245 ----d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~---- 313 (851)
-...|..+++.|...|+++.|+.+|++..+.....- ..+|...+++-.+..+++.|+++++++...--.
T Consensus 382 a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~ 461 (835)
T KOG2047|consen 382 AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE 461 (835)
T ss_pred CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence 235788899999999999999999999887654422 456777777777888899999988876532111
Q ss_pred -------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHH
Q 038852 314 -------------MTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFK 380 (851)
Q Consensus 314 -------------~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~ 380 (851)
-+..+|..+++.....|-++....+|+++++..+. ++....+.+..+....-++++.++|+
T Consensus 462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria------TPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 462 YYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA------TPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred hhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 13356777777777788999999999999986655 56677777778888888999999999
Q ss_pred HhccCCCCCCCccCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 381 KAGTHPKSKPFAMDVAGYNNIIARYCE---NEMLEEAEKLLREISTKSLSPDVT--TFRTLIDAYLKVERIDDALELFNR 455 (851)
Q Consensus 381 ~~~~~~~~~~~~~d~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~--~~~~Ll~~~~~~g~~~~A~~~~~~ 455 (851)
+-+...+-. .-...|+..+.-+.+ ...++.|.++|+..++ ++.|... .|......-.+.|....|+++|++
T Consensus 536 rgI~LFk~p---~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyer 611 (835)
T KOG2047|consen 536 RGISLFKWP---NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYER 611 (835)
T ss_pred cCCccCCCc---cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 875543321 134567777766655 3468999999999998 5665532 222222333456888899999999
Q ss_pred HHHcCC-ccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHH-cC
Q 038852 456 MVESGL-RVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLI---YDVVVRGLCNEGLFDMSKDIVDQMMK-YG 530 (851)
Q Consensus 456 m~~~~~-~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~---~~~ll~a~~~~g~~~~A~~~~~~m~~-~g 530 (851)
+...-. .....+|++.+.--...=-.....++|+++++. -||... ...+...-++.|..+.|..+|....+ .+
T Consensus 612 at~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~d 689 (835)
T KOG2047|consen 612 ATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICD 689 (835)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCC
Confidence 775421 112334444333222222234445667777665 334433 22344455778999999999988765 34
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 531 VGITPALQDFVRETFGKAGRGEEIERVLN 559 (851)
Q Consensus 531 ~~~~~~~~~~L~~~~~~~G~~~eA~~ll~ 559 (851)
...+.+.+...-+.-.+.|+.+...++++
T Consensus 690 Pr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 690 PRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 56678889999999999999666666554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-13 Score=143.25 Aligned_cols=407 Identities=11% Similarity=0.118 Sum_probs=312.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 038852 108 HNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCD 187 (851)
Q Consensus 108 ~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~ 187 (851)
..-+..-.++..+..|.-++++++..-++.| ..|...+.+--..|++..|..+|++.++ ..|+..+|++.|+.-.+
T Consensus 111 lkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElR 186 (677)
T KOG1915|consen 111 LKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQIFERWME---WEPDEQAWLSFIKFELR 186 (677)
T ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHH
Confidence 3456666788899999999999987654433 4566667677789999999999999865 56899999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHH
Q 038852 188 EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG--ADSLVYNNLISGFLNLGNLEKA 265 (851)
Q Consensus 188 ~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~~~~~Li~~~~~~g~~~~A 265 (851)
-..++.|..+|++..- +.|++.+|...++.-.+.|.+..|..+|+.+++.--. -+...+++.+..-.+...++.|
T Consensus 187 ykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERa 263 (677)
T KOG1915|consen 187 YKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERA 263 (677)
T ss_pred hhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 5689999999999999999999999999999875211 1224555555555677889999
Q ss_pred HHHHHHHHhcCCccc-hhhHHHHHHHHHHcCCHHHHHHH--------HHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHH
Q 038852 266 NELFDELKQRCLVYD-GVVNATFMEWWFNQGKDKEAMQS--------YKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQ 336 (851)
Q Consensus 266 ~~~~~~~~~~~~~~d-~~~~~~li~~~~~~g~~~~A~~l--------~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~ 336 (851)
.-+|+-+++.-.... ..+|..+...-.+.|+.....+. |+.+++.+. .|-.+|-..+......|+.+...
T Consensus 264 r~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ir 342 (677)
T KOG1915|consen 264 RFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIR 342 (677)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHH
Confidence 999999887644422 45666666666667775544433 445555543 46678888999989999999999
Q ss_pred HHHHHHHHcCCCCCCCccCHHHHHH-----HHH---HHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhc
Q 038852 337 ALFEQMLDNHQPPNIQAVNSDTFNI-----MVN---ECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCEN 408 (851)
Q Consensus 337 ~l~~~m~~~~~~p~~~~~~~~~~~~-----L~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~ 408 (851)
++|++++.+ +.|-. ....|.. +-. .-....+++.+.++|..+++..+.+.+.. ...|...+....+.
T Consensus 343 e~yErAIan-vpp~~---ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtF-aKiWlmyA~feIRq 417 (677)
T KOG1915|consen 343 ETYERAIAN-VPPAS---EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTF-AKIWLMYAQFEIRQ 417 (677)
T ss_pred HHHHHHHcc-CCchh---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchH-HHHHHHHHHHHHHH
Confidence 999999975 44421 1112211 111 22357899999999999988766654432 33455555556678
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHH
Q 038852 409 EMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPIL 488 (851)
Q Consensus 409 g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll 488 (851)
.++..|.+++..++ |..|...+|...|..-.+.+++|.+.++|++.++.++.....|.. .+..-...|+.+.|..+|
T Consensus 418 ~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k-yaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 418 LNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK-YAELETSLGDTDRARAIF 494 (677)
T ss_pred cccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH-HHHHHHHhhhHHHHHHHH
Confidence 99999999999988 667899999999999999999999999999999988766655543 666667789999999999
Q ss_pred HHHhhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038852 489 TKMGEKD-PKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG 530 (851)
Q Consensus 489 ~~m~~~~-~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g 530 (851)
+-++... +.--...|...|+--...|.+++|..+|+++++..
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 9998763 33345677777777788999999999999999754
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-15 Score=150.65 Aligned_cols=438 Identities=11% Similarity=0.038 Sum_probs=286.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 038852 111 VQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK 190 (851)
Q Consensus 111 l~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~ 190 (851)
+..++...|+..|+.+++-....+.+....+-..+..++.+.|+|++|+..|+.+..++ .++...+..|+.++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHH
Confidence 56788899999999999887655433333445567788889999999999999987643 3677888889988899999
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFD 270 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~ 270 (851)
+.+|..+.+++.+ +...-..|.....+.++-++-..+...+.+. ..--.+|+......-.+.+|+++|+
T Consensus 107 Y~eA~~~~~ka~k------~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHHhhCCC------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999988776532 3334555666666777777666665555432 1223345555555667888888888
Q ss_pred HHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC--CC-----------------
Q 038852 271 ELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKH--EK----------------- 331 (851)
Q Consensus 271 ~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~--g~----------------- 331 (851)
+++..+.. -..+...+..+|.+..-++-+.++++..+..-. .+....|..+....+. |+
T Consensus 176 rvL~dn~e-y~alNVy~ALCyyKlDYydvsqevl~vYL~q~p-dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~ 253 (557)
T KOG3785|consen 176 RVLQDNPE-YIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP-DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY 253 (557)
T ss_pred HHHhcChh-hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC-CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc
Confidence 88765443 122333445567777777777777776665432 2223333333222221 11
Q ss_pred ----------------HHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCH
Q 038852 332 ----------------KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDV 395 (851)
Q Consensus 332 ----------------~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~ 395 (851)
-+.|+.++-.+++ .-+++...|+..|.+.+++.+|..+.+++.- . .|..
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~---------~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P---t---tP~E 318 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMK---------HIPEARLNLIIYYLNQNDVQEAISLCKDLDP---T---TPYE 318 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHh---------hChHhhhhheeeecccccHHHHHHHHhhcCC---C---ChHH
Confidence 1222222222222 1345667788889999999999999987732 2 1222
Q ss_pred HHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhH
Q 038852 396 AGYNNIIARYCENE-------MLEEAEKLLREISTKSLSPDVT-TFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSF 467 (851)
Q Consensus 396 ~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~pd~~-~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 467 (851)
|..-...++..| .+.-|...|.-+-+.+..-|.. ---++..++.-...+|+.+.+++.+...-..++...
T Consensus 319 --yilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn 396 (557)
T KOG3785|consen 319 --YILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN 396 (557)
T ss_pred --HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 222222233333 3555666666554444443422 234566677777889999999988877655556666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038852 468 GTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYD-VVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFG 546 (851)
Q Consensus 468 ~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~-~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~ 546 (851)
++ +..+++..|++.+|.++|-++....++ |..+|. .|.++|.+.+..+.|++++-++... .........++..+.
T Consensus 397 ~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~--~e~fsLLqlIAn~CY 472 (557)
T KOG3785|consen 397 LN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP--SERFSLLQLIANDCY 472 (557)
T ss_pred hH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc--hhHHHHHHHHHHHHH
Confidence 65 889999999999999999998877777 555554 5667889999999998877554321 122334455788899
Q ss_pred hcCCHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCcc
Q 038852 547 KAGRGEEIERVLNADRWGYAAPVPPPRTSGPPQMTGQQ 584 (851)
Q Consensus 547 ~~G~~~eA~~ll~~~~~~~~~~p~~~~~~~~~~~~~~~ 584 (851)
+++.+--|.+.|+++....|.+..|.-..|+|......
T Consensus 473 k~~eFyyaaKAFd~lE~lDP~pEnWeGKRGACaG~f~~ 510 (557)
T KOG3785|consen 473 KANEFYYAAKAFDELEILDPTPENWEGKRGACAGLFRQ 510 (557)
T ss_pred HHHHHHHHHHhhhHHHccCCCccccCCccchHHHHHHH
Confidence 99999999999999877666555544466666554443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.8e-16 Score=168.39 Aligned_cols=287 Identities=15% Similarity=0.185 Sum_probs=230.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--ccchhhHHHHHHHHHHcCCHHHHHHH
Q 038852 226 RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCL--VYDGVVNATFMEWWFNQGKDKEAMQS 303 (851)
Q Consensus 226 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l 303 (851)
+..+|+.+|.++...... ...+...++++|.+.+++++|+++|+.+.+... .-+..+|.+.+--+- +.-+--.+
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHHHHH
Confidence 568999999995555333 557788899999999999999999999987642 235667776654332 22222222
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 038852 304 YKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAG 383 (851)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~ 383 (851)
-+++++.+ +..+.+|.+++++|.-.++.+.|++.|++++.. .|+ ...+|+.++.-+....++|.|...|+.++
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~----faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPR----FAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCc----cchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 23333333 345689999999999999999999999999984 443 57899999999999999999999999998
Q ss_pred cCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Q 038852 384 THPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRV 463 (851)
Q Consensus 384 ~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~ 463 (851)
...+. +..+|..|+..|.+.++++.|+-.|.++++.+.. +.+....++..+.+.|+.|+|+.+|+++...+.+.
T Consensus 483 ~~~~r-----hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 483 GVDPR-----HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN 556 (638)
T ss_pred cCCch-----hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence 77665 7778888999999999999999999999976433 67778889999999999999999999999998888
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038852 464 VVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGV 531 (851)
Q Consensus 464 ~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~ 531 (851)
....|. .+..+...+++++|+..|+++++.-.. +...|..+.+.|.+.|+.+.|+.-|..+.+.+.
T Consensus 557 ~l~~~~-~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 557 PLCKYH-RASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred chhHHH-HHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 777776 668888999999999999999886333 566788888999999999999999998887653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-14 Score=148.57 Aligned_cols=311 Identities=12% Similarity=0.102 Sum_probs=233.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhc
Q 038852 182 INTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG--ADSLVYNNLISGFLNL 259 (851)
Q Consensus 182 i~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~~~~~Li~~~~~~ 259 (851)
..++-.....++++.-.+.....+ +.-+...-+..+.+.....|++.|+.+|+++++.++- -|..+|..++.+-...
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 344555556677777666665543 4334444555666677889999999999999987521 1667787776554332
Q ss_pred CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 038852 260 GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALF 339 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~ 339 (851)
..+ .++..-.-.--+....+...+++.|.-.++.++|+.+|+++++.+.+. ..+|+.|+.-|...++...|++.|
T Consensus 313 skL----s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~-~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 313 SKL----SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY-LSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHH----HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch-hHHHHHhhHHHHHhcccHHHHHHH
Confidence 222 222221111122356678888899999999999999999999998654 478999999999999999999999
Q ss_pred HHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 340 EQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLR 419 (851)
Q Consensus 340 ~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 419 (851)
+++++.+ |. |-.+|..|+.+|.-.+...-|+-+|+++....+. |...|.+|+.+|.+.++.++|++.|.
T Consensus 388 RrAvdi~--p~----DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-----DsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 388 RRAVDIN--PR----DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-----DSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred HHHHhcC--ch----hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-----chHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999854 33 8899999999999999999999999999887666 99999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCccc--hhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 038852 420 EISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVES----GLRVV--VSFGTKVFNELITKGKVAECAPILTKMGE 493 (851)
Q Consensus 420 ~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~--~~~~~~L~~~~~~~g~~~~A~~ll~~m~~ 493 (851)
+....|-. +...+..|+..|-+.++.++|..+|++.++. |...+ ......|...+.+.+++++|..+......
T Consensus 457 rai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 457 RAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 99987533 6688999999999999999999999998863 22222 22223356667788888888765544433
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038852 494 KDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 494 ~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~ 528 (851)
. .-..++|..+++++.+
T Consensus 536 ~------------------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 536 G------------------ETECEEAKALLREIRK 552 (559)
T ss_pred C------------------CchHHHHHHHHHHHHH
Confidence 2 3345777778777765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-15 Score=166.37 Aligned_cols=292 Identities=16% Similarity=0.109 Sum_probs=223.2
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 038852 153 KRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGP-SSNTYRHLTKGFVDAGRIGEAV 231 (851)
Q Consensus 153 g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p-~~~~~~~Li~~~~~~g~~~~A~ 231 (851)
-+..+|+.+|.++... +.-...+...++.+|.+.+++++|+++|+.+.+..+... +.++|.+.+.-+-+ +-++
T Consensus 333 y~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~L 406 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVAL 406 (638)
T ss_pred HHHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHH
Confidence 3567888888885432 222345667788888888888888888888887766543 45667666544332 1122
Q ss_pred HHH-HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038852 232 DLL-RDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMER 310 (851)
Q Consensus 232 ~l~-~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 310 (851)
.++ .++++.... ...+|.+++.+|.-.++.+.|++.|++++..+.. ...+|..++.-+....++|.|...|+.++..
T Consensus 407 s~Laq~Li~~~~~-sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 407 SYLAQDLIDTDPN-SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHhhCCC-CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 222 233333222 6688888888888888888888888888877655 6778888888888888888888888888876
Q ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCC
Q 038852 311 NFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKP 390 (851)
Q Consensus 311 ~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 390 (851)
+.+. -..|..|+..|.+.++++.|+-.|+++++. .|. +.+....++..+.+.|+.|+|+.+|+++...++.
T Consensus 485 ~~rh-YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~----nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-- 555 (638)
T KOG1126|consen 485 DPRH-YNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPS----NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-- 555 (638)
T ss_pred Cchh-hHHHHhhhhheeccchhhHHHHHHHhhhcC--Ccc----chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC--
Confidence 6532 246677889999999999999999999884 443 7888899999999999999999999999877666
Q ss_pred CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccch
Q 038852 391 FAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVV 465 (851)
Q Consensus 391 ~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 465 (851)
|...-...+..+...+++++|+..|+++++. +.-+..++..|+..|.+.|+.+.|+.-|.-|.+.+.+...
T Consensus 556 ---n~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 556 ---NPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred ---CchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 6666667778888899999999999999875 3335778899999999999999999999999888766544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-13 Score=139.58 Aligned_cols=429 Identities=12% Similarity=0.126 Sum_probs=290.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HHcCChhHHHHHHHHHHHcCCCC-CCHHHHHHHHHHH
Q 038852 109 NRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAM--YRAKRYDDAVALFKYFFDQADIV-PNIVSYNNLINTY 185 (851)
Q Consensus 109 ~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~l~~~~~~~~~~~-pd~~~~~~Li~~~ 185 (851)
+-+..++..|++.++.-++++|...+...+..+-..|+... ....+.--| -+++++...... .+..+|
T Consensus 120 ~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~--E~~~Fv~~~~~~E~S~~sW------- 190 (625)
T KOG4422|consen 120 NNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFA--EWEEFVGMRNFGEDSTSSW------- 190 (625)
T ss_pred hHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcch--hHHHHhhcccccccccccc-------
Confidence 44566788899999999999999988777766655555433 333333322 122222221111 123334
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKA 265 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 265 (851)
+.|++.+ -+|+.. |. +..+|..||.++++--..+.|.++|++..+...+.+..+||.+|.+-.-.. .
T Consensus 191 -K~G~vAd--L~~E~~----PK--T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~ 257 (625)
T KOG4422|consen 191 -KSGAVAD--LLFETL----PK--TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----G 257 (625)
T ss_pred -ccccHHH--HHHhhc----CC--CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----c
Confidence 2344333 333332 22 455899999999999899999999999888877888889998887654332 3
Q ss_pred HHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHH-HHHHHH
Q 038852 266 NELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEA----MQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEE-AQALFE 340 (851)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A----~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~-A~~l~~ 340 (851)
.+++.+|....+.||..++|+++.+..+.|+++.| ++++.+|.+.|+.|...+|..+|..+++.++..+ |..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 77888899888999999999999999999987764 5667788889999999999999998888877643 555555
Q ss_pred HHHH----cCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccC---HHHHHHHHHHHHhcCCHHH
Q 038852 341 QMLD----NHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMD---VAGYNNIIARYCENEMLEE 413 (851)
Q Consensus 341 ~m~~----~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d---~~~~~~li~~~~~~g~~~~ 413 (851)
++.. +.+.|- ...|...|...+..|.+..+.+.|..+-.-+........+.++ ..-|..+..+.|.....+.
T Consensus 338 dI~N~ltGK~fkp~-~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPI-TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHhhccCcccCC-CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543 223331 1225667777788888999988888776655443322222222 3446677788888888999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcC-CH-----------
Q 038852 414 AEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKG-KV----------- 481 (851)
Q Consensus 414 A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g-~~----------- 481 (851)
-++.|+.|+-.-.-|+..+...++.+....+.++-.-++|..+++.|..........++..+++.. ..
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~ 496 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVA 496 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 999999998776778888888888988889999999999999998876555555444555555543 11
Q ss_pred --HHHHHHHH-------HHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhc
Q 038852 482 --AECAPILT-------KMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVG----ITPALQDFVRETFGKA 548 (851)
Q Consensus 482 --~~A~~ll~-------~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~L~~~~~~~ 548 (851)
+-|..+++ +|. ..+.....++.++-.+.+.|+.++|.++|..+.+.+-. +.......+++.-.+.
T Consensus 497 ~ak~aad~~e~~e~~~~R~r--~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 497 FAKCAADIKEAYESQPIRQR--AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred HHHHHHHHHHHHHhhHHHHH--hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence 01122222 122 23345556777777888999999999999988654322 2233333466666677
Q ss_pred CCHHHHHHHHHhhh
Q 038852 549 GRGEEIERVLNADR 562 (851)
Q Consensus 549 G~~~eA~~ll~~~~ 562 (851)
.....|..+++-+.
T Consensus 575 ~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 575 NSPSQAIEVLQLAS 588 (625)
T ss_pred CCHHHHHHHHHHHH
Confidence 77888888777664
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.7e-14 Score=148.57 Aligned_cols=443 Identities=12% Similarity=0.035 Sum_probs=320.0
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
..+..+++.++...++..|+-+.+++......| .....++.+++-.|.++.|..++..- +. ...|..+...++.+
T Consensus 17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp--~d~~~~aq~l~~~~~y~ra~~lit~~-~l--e~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 17 EKYRRLVRDALMQHRYKTALFWADKVAGLTNDP--ADIYWLAQVLYLGRQYERAAHLITTY-KL--EKRDIACRYLAAKC 91 (611)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCh--HHHHHHHHHHHhhhHHHHHHHHHHHh-hh--hhhhHHHHHHHHHH
Confidence 456677888889999999999999988665444 44455888899999999999888764 21 23578888899999
Q ss_pred HHHcCChHHHHHHHHHH----HHh--CC------CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 038852 185 YCDEGKVDEGMNVFRRI----IET--AP------VGPS-----------SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~----~~~--~~------~~p~-----------~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g 241 (851)
+.+..++++|..++.+. ... .+ ...| ...+..-...|....++++|...|.+++..+
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D 171 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD 171 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc
Confidence 99999999999998822 110 00 0001 0112222345666778889999999888764
Q ss_pred CCCCHHHHHHHHHHHHh-----------------cC-CHHHHHHHHHHHHhc----------------CCccchhhHHHH
Q 038852 242 LGADSLVYNNLISGFLN-----------------LG-NLEKANELFDELKQR----------------CLVYDGVVNATF 287 (851)
Q Consensus 242 ~~pd~~~~~~Li~~~~~-----------------~g-~~~~A~~~~~~~~~~----------------~~~~d~~~~~~l 287 (851)
+. ....+..|+....- .+ +.+.-+.+|+....+ +..-+..+....
T Consensus 172 ~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ 250 (611)
T KOG1173|consen 172 AK-CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEK 250 (611)
T ss_pred hh-hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHH
Confidence 43 22222222222111 01 111222222211000 122345566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHH
Q 038852 288 MEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECF 367 (851)
Q Consensus 288 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~ 367 (851)
.+-+...+++++..++++.+++.++... ..+..-|.++.+.|+..+-..+-.++++.. |+ ...+|..++..|.
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~dpfh~-~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~----~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKDPFHL-PCLPLHIACLYELGKSNKLFLLSHKLVDLY--PS----KALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhCCCCc-chHHHHHHHHHHhcccchHHHHHHHHHHhC--CC----CCcchhhHHHHHH
Confidence 7778889999999999999999875433 455555668899999999888888888853 33 6789999999999
Q ss_pred HcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 038852 368 KHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERID 447 (851)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~ 447 (851)
..|++.+|.++|.++...++. -...|..++..|...|.-|.|+..+..+.+. +.-...-+..++.-|.+.++++
T Consensus 324 ~i~k~seARry~SKat~lD~~-----fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPT-----FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCcc-----ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHH
Confidence 999999999999999776555 4567999999999999999999999887664 2222333455677888999999
Q ss_pred HHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CCC----CCHHHHHHHHHHHHhcCChHHHHH
Q 038852 448 DALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEK--DPK----PDFLIYDVVVRGLCNEGLFDMSKD 521 (851)
Q Consensus 448 ~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~--~~~----pd~~~~~~ll~a~~~~g~~~~A~~ 521 (851)
.|.++|..+....+. +....+.+..+....+.+.+|..+|+..+.. .+. .-..+++.|..+|.+.+++++|+.
T Consensus 398 LAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 999999999987644 4444455777777889999999999987732 111 123468888999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCC
Q 038852 522 IVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAP 568 (851)
Q Consensus 522 ~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~ 568 (851)
.|++.+... +.+..++..++.+|...|+++.|++.|++....-|.+
T Consensus 477 ~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 477 YYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 999999764 5788889999999999999999999999987755543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-13 Score=153.87 Aligned_cols=292 Identities=11% Similarity=0.067 Sum_probs=174.2
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 038852 151 RAKRYDDAVALFKYFFDQADIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGE 229 (851)
Q Consensus 151 ~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~ 229 (851)
..|+++.|.+.+.+..+.. ++ ...+...+.++...|++++|.++|+++.+..+. .+.......+..+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~---~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~-~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA---AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN-DNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-CchHHHHHHHHHHHHCCCHHH
Confidence 4688888888887765432 33 344455566777778888888888887665433 112234445777777888888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHH---HHHcCCHHHHHHHHHH
Q 038852 230 AVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEW---WFNQGKDKEAMQSYKS 306 (851)
Q Consensus 230 A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~---~~~~g~~~~A~~l~~~ 306 (851)
|++.++++.+..+. +..++..++.+|...|++++|.+++..+.+.+.............+ +...+..+++.+.+..
T Consensus 172 Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888888877655 6677778888888888888888888888776544222221111111 1223333333445555
Q ss_pred HHHhcCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHH--HHHHHHHHHHcCChHHHHHHHHH
Q 038852 307 LMERNFR---MTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDT--FNIMVNECFKHGKFSEAIETFKK 381 (851)
Q Consensus 307 ~~~~~~~---~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~--~~~L~~~~~~~g~~~~A~~~~~~ 381 (851)
+.+.... .+...+..++..+...|+.++|++++++.++.... +... ...........++.+.+++.+++
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd------~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD------DRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC------cccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 4444332 25566666777777777777777777777764322 1111 11111222234556666666666
Q ss_pred hccCCCCCCCccCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 382 AGTHPKSKPFAMDV--AGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 382 ~~~~~~~~~~~~d~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
..+..+. |. ....+++..|.+.|++++|.+.|+........||...+..++..+.+.|+.++|.++|++.+.
T Consensus 325 ~lk~~p~-----~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 325 QAKNVDD-----KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhCCC-----ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6554444 34 555566666666677777777666433323346666666666666666777777666666543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.4e-13 Score=137.71 Aligned_cols=403 Identities=16% Similarity=0.153 Sum_probs=275.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH--HHHHcCChHHH-HHHHHHHHHhCCCCCCHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLIN--TYCDEGKVDEG-MNVFRRIIETAPVGPSSNTYR 215 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~--~~~~~g~~~~A-~~l~~~~~~~~~~~p~~~~~~ 215 (851)
+++=|.|+. +...|.++++.-+|+.|. ..++..+...-..|++ +|....+.--| ++.|-.|.+.+.. +..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~-~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~--S~~sW- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMR-SENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED--STSSW- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHH-hcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc--ccccc-
Confidence 344555554 456788888888998884 3444444443333332 33333332211 2233333333211 23344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcC
Q 038852 216 HLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQG 295 (851)
Q Consensus 216 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g 295 (851)
+.|++.+ ++-+.+ .+ +..+|.+||.++++.-..+.|.++|++..+.....+..+++.+|.+-.-.
T Consensus 191 -------K~G~vAd---L~~E~~---PK-T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~- 255 (625)
T KOG4422|consen 191 -------KSGAVAD---LLFETL---PK-TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS- 255 (625)
T ss_pred -------ccccHHH---HHHhhc---CC-CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh-
Confidence 3444433 444433 22 66799999999999999999999999999888888999999988764332
Q ss_pred CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHH----HHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCC
Q 038852 296 KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEA----QALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGK 371 (851)
Q Consensus 296 ~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A----~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~ 371 (851)
...+++.+|.....+||..|+|+++.+..+.|+++.| ++++.+|.+.|+.| ...+|..++..+++.++
T Consensus 256 ---~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVeP-----sLsSyh~iik~f~re~d 327 (625)
T KOG4422|consen 256 ---VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEP-----SLSSYHLIIKNFKRESD 327 (625)
T ss_pred ---ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCc-----chhhHHHHHHHhcccCC
Confidence 2278899999999999999999999999999988764 56778888999999 67899999998888877
Q ss_pred hH-HHHHHHHHhccCCCCCCCc----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHH
Q 038852 372 FS-EAIETFKKAGTHPKSKPFA----MDVAGYNNIIARYCENEMLEEAEKLLREISTKS----LSPD---VTTFRTLIDA 439 (851)
Q Consensus 372 ~~-~A~~~~~~~~~~~~~~~~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~pd---~~~~~~Ll~~ 439 (851)
.. .+..++.++...-..+.+. -|...|...+..|.+..+.+-|.++..-+.... +.++ .+-|..+..+
T Consensus 328 p~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~l 407 (625)
T KOG4422|consen 328 PQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDL 407 (625)
T ss_pred chhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHH
Confidence 63 4555555543332222222 255667777888889999999988877554321 2222 2345667778
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-h--
Q 038852 440 YLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGL-F-- 516 (851)
Q Consensus 440 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~-~-- 516 (851)
.+....++.-..+|+.|+-.-.-+...+...++++....|.++-.-++|..++..|...+......++..+++..- .
T Consensus 408 icq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~t 487 (625)
T KOG4422|consen 408 ICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLT 487 (625)
T ss_pred HHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCC
Confidence 8888899999999999997766677777777888999999999999999999888765555555556666555431 0
Q ss_pred -----------HHHHHHHHHHH-----HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCC
Q 038852 517 -----------DMSKDIVDQMM-----KYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPV 569 (851)
Q Consensus 517 -----------~~A~~~~~~m~-----~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p 569 (851)
+-|..+++... -.....+....++++-++.|.|+.++|.++|.-+.....+.+
T Consensus 488 p~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip 556 (625)
T KOG4422|consen 488 PEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP 556 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence 01111211111 023446777888899999999999999999998865444433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=5e-13 Score=149.74 Aligned_cols=296 Identities=13% Similarity=0.025 Sum_probs=179.9
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKA 265 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 265 (851)
...|+++.|.+.+.+..+..+. ....+...+.++...|++++|.++|.++.+.....+..+.......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~--~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE--PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4578999999999888775433 34455666778888899999999999887764443333455568888889999999
Q ss_pred HHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHH-HHHHH---HHhCCCHHHHHHHHHH
Q 038852 266 NELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCN-TLLEV---LLKHEKKEEAQALFEQ 341 (851)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~-~Li~~---~~~~g~~~~A~~l~~~ 341 (851)
.+.++++.+..+. +..++..++.+|...|++++|++++..+.+.+.... ..+. ....+ +...+..+++.+.+..
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999888766 667888888888899999999988888888765322 2221 11111 1222233333444544
Q ss_pred HHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 342 MLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREI 421 (851)
Q Consensus 342 m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 421 (851)
+.+.... ....+...+..++..+...|+.++|++++++..+..++.. +..............++.+.+++.+++.
T Consensus 251 ~~~~~p~--~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~---~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 251 WWKNQPR--HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR---AISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHCCH--HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc---cchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 4443211 0001556677777777777777777777777766444311 1100111111222345566666666665
Q ss_pred HhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 422 STKSLSPDV--TTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKM 491 (851)
Q Consensus 422 ~~~g~~pd~--~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m 491 (851)
.+.. +-|. ....+++..|.+.|++++|.++|+++......|+...+..+...+.+.|+.++|.++|++.
T Consensus 326 lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 326 AKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5531 1133 4455666666666666666666664333222333333445666666666666666666654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-12 Score=140.67 Aligned_cols=449 Identities=14% Similarity=0.122 Sum_probs=306.9
Q ss_pred CCCccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 038852 102 GPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNL 181 (851)
Q Consensus 102 ~~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~L 181 (851)
.....++..+..+...+.+...+++.+.++... .-...+....+-.+...|+-++|.+..+..++. -..+.++|..+
T Consensus 5 ~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--d~~S~vCwHv~ 81 (700)
T KOG1156|consen 5 PKENALFRRALKCYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--DLKSHVCWHVL 81 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhcc--CcccchhHHHH
Confidence 344678888889999999999999999988743 334455555555566789999999999987663 23467899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038852 182 INTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGN 261 (851)
Q Consensus 182 i~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~ 261 (851)
+-.+....++++|++.|..+++.++. |...|..|...-+..++++...+.-...+..... ....|..++.++.-.|+
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~~d--N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIEKD--NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGE 158 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998766 8889999998899999999999988888887554 66789999999999999
Q ss_pred HHHHHHHHHHHHhcCC-ccchhhHHHHH------HHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHH
Q 038852 262 LEKANELFDELKQRCL-VYDGVVNATFM------EWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEE 334 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~-~~d~~~~~~li------~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~ 334 (851)
+..|..++++..+... .++...+.... ....+.|..++|++.+.+....-+ .....-......+.+.+++++
T Consensus 159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~-Dkla~~e~ka~l~~kl~~lEe 237 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV-DKLAFEETKADLLMKLGQLEE 237 (700)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH-HHHHHhhhHHHHHHHHhhHHh
Confidence 9999999999887652 34444444332 335567788888877765443311 111233445677889999999
Q ss_pred HHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHH-HHHHHhccCCCCCCCc----cC---HHHHHHHHHHHH
Q 038852 335 AQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAI-ETFKKAGTHPKSKPFA----MD---VAGYNNIIARYC 406 (851)
Q Consensus 335 A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~----~d---~~~~~~li~~~~ 406 (851)
|..+|..++..+ || +...|..+..++.+..+.-+++ .+|....+..+..... .+ ..-+...++-|.
T Consensus 238 A~~~y~~Ll~rn--Pd----n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 238 AVKVYRRLLERN--PD----NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYL 311 (700)
T ss_pred HHHHHHHHHhhC--ch----hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHH
Confidence 999999999854 43 5555555555664444444444 6666554333221100 00 011111111111
Q ss_pred ----hcC-------------CHHHHHHHHHHHHh--------CC----------CCCCHHHH--HHHHHHHHHcCCHHHH
Q 038852 407 ----ENE-------------MLEEAEKLLREIST--------KS----------LSPDVTTF--RTLIDAYLKVERIDDA 449 (851)
Q Consensus 407 ----~~g-------------~~~~A~~l~~~m~~--------~g----------~~pd~~~~--~~Ll~~~~~~g~~~~A 449 (851)
+.| +.+.+ .++++++. .| -.|....| ..++..|-+.|+++.|
T Consensus 312 ~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A 390 (700)
T KOG1156|consen 312 RPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA 390 (700)
T ss_pred HHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence 111 11111 12222211 11 13344433 5577788899999999
Q ss_pred HHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038852 450 LELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKY 529 (851)
Q Consensus 450 ~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~ 529 (851)
..+++.+++..+ .-+..|..-.+++..+|++++|..++++..+.+. +|...=.-.+.-..++++.++|.++.....+.
T Consensus 391 ~~yId~AIdHTP-TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 391 LEYIDLAIDHTP-TLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTRE 468 (700)
T ss_pred HHHHHHHhccCc-hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhc
Confidence 999999998753 2344455566889999999999999999988753 25444445566667889999999999999887
Q ss_pred CCCCCH--HHHHH------HHHHHHhcCCHHHHHHHHHhhhhcCC
Q 038852 530 GVGITP--ALQDF------VRETFGKAGRGEEIERVLNADRWGYA 566 (851)
Q Consensus 530 g~~~~~--~~~~~------L~~~~~~~G~~~eA~~ll~~~~~~~~ 566 (851)
|...-. ....+ -+++|.+.|++.+|++-|..+..-|.
T Consensus 469 ~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~ 513 (700)
T KOG1156|consen 469 GFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYK 513 (700)
T ss_pred ccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 752111 11111 36788899999999888887766554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-16 Score=166.80 Aligned_cols=260 Identities=17% Similarity=0.220 Sum_probs=76.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCC
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQ-LGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGK 296 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~ 296 (851)
+..+.+.|++++|++++++..... ..-|...|..++..+...++++.|++.|+++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444445555555555553332222 1123344444444445555555555555555444332 33333334433 34455
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHH
Q 038852 297 DKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAI 376 (851)
Q Consensus 297 ~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~ 376 (851)
+++|++++++..+.. .+...+..++..+...++++++.++++.+......++ +...|..++.++.+.|+.++|+
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD----SARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-----HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHcCCHHHHH
Confidence 555555544443332 1223444555556666666666666666554221111 4555666666666666666666
Q ss_pred HHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 377 ETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRM 456 (851)
Q Consensus 377 ~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m 456 (851)
++|+++....+. |....+.++..+...|+.+++.++++...+.. ..|...|..++.+|...|+.++|+.+|+++
T Consensus 167 ~~~~~al~~~P~-----~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 167 RDYRKALELDPD-----DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHH-TT------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-----CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccc
Confidence 666666555444 55556666666666666666666665555432 234445566666666666666666666666
Q ss_pred HHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 038852 457 VESGLRVVVSFGTKVFNELITKGKVAECAPILTKMG 492 (851)
Q Consensus 457 ~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~ 492 (851)
.+.+. .+..+...++.++...|+.++|.++++++.
T Consensus 241 ~~~~p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 241 LKLNP-DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHST-T-HHHHHHHHHHHT----------------
T ss_pred ccccc-cccccccccccccccccccccccccccccc
Confidence 66442 233334445666666666666666655543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.7e-13 Score=148.52 Aligned_cols=283 Identities=12% Similarity=0.090 Sum_probs=130.4
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHH
Q 038852 152 AKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSS-NTYRHLTKGFVDAGRIGEA 230 (851)
Q Consensus 152 ~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~-~~~~~Li~~~~~~g~~~~A 230 (851)
.||++.|++++....+..+ -....|.....+....|++++|.+.|.++.+..+. +. .........+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~--~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAELADN--DQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHCCCHHHH
Confidence 4677766666665433211 01222333334445667777777777666654322 11 1111235566666777777
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchh-------hHHHHHHHHHHcCCHHHHHHH
Q 038852 231 VDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGV-------VNATFMEWWFNQGKDKEAMQS 303 (851)
Q Consensus 231 ~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~-------~~~~li~~~~~~g~~~~A~~l 303 (851)
++.++++.+.... +...+..++.+|.+.|++++|.+++..+.+.....+.. .|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7777776666554 56666666667777777777777766666654432111 111111111122222223333
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 038852 304 YKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAG 383 (851)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~ 383 (851)
++.+.+. .+.+......++..+...|+.++|.+++++.++.. + +.... ++...+..++.+++++.+++..
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~-----~~~l~--~l~~~l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--Y-----DERLV--LLIPRLKTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C-----CHHHH--HHHhhccCCChHHHHHHHHHHH
Confidence 3322211 11233344444444445555555555554444421 1 11111 1111122344444444444444
Q ss_pred cCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 384 THPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRM 456 (851)
Q Consensus 384 ~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m 456 (851)
+..++ |...+.++...|.+.+++++|.+.|+.+.+. .|+..++..|..++.+.|+.++|.++|++.
T Consensus 322 k~~P~-----~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 322 KQHGD-----TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred hhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43333 4444444444444444444444444444432 344444444444444444444444444444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.8e-12 Score=134.57 Aligned_cols=444 Identities=12% Similarity=0.124 Sum_probs=292.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRI-RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
+..-+..+.+.|++..-+..|++++..-. .-...+|...+......+-.+-++.+|++.++. +...-+..|..+
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie~L 179 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHHHH
Confidence 44556778889999999999998886542 234567888888888888899999999998774 444467778888
Q ss_pred HHcCChHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAP-----VGPSSNTYRHLTKGFVDAGRIG---EAVDLLRDMLSRQLGADSLVYNNLISGFL 257 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~-----~~p~~~~~~~Li~~~~~~g~~~---~A~~l~~~m~~~g~~pd~~~~~~Li~~~~ 257 (851)
++.+++++|.+.+..++..+. .+.+...|..+.+...+.-+.- ....+++.++.+-..--...|++|++.|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 999999999999988865421 1224556777766666544332 23344455444322212368999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH----------------cC------CHHHHHHHHHHHHHhcC---
Q 038852 258 NLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN----------------QG------KDKEAMQSYKSLMERNF--- 312 (851)
Q Consensus 258 ~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~----------------~g------~~~~A~~l~~~~~~~~~--- 312 (851)
+.|++++|.++|++.+..-.. +.-+..+.+.|+. .| +++-.+.-|+.+++...
T Consensus 260 r~g~~ekarDvyeeai~~v~t--vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTVMT--VRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HhhhhHHHHHHHHHHHHhhee--hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 999999999999998764322 2222222222221 11 23334444555554332
Q ss_pred --------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 038852 313 --------RMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAV-NSDTFNIMVNECFKHGKFSEAIETFKKAG 383 (851)
Q Consensus 313 --------~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~~ 383 (851)
..++..|..-+. +..|+..+-+.+|.+++.. +.|..... -...|..++..|.+.|+++.|..+|+++.
T Consensus 338 NsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 123344443333 3357788889999998875 44433221 34578999999999999999999999986
Q ss_pred cCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------------CHHHHHHHHHHHHHcCCH
Q 038852 384 THPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSP-----------------DVTTFRTLIDAYLKVERI 446 (851)
Q Consensus 384 ~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------------d~~~~~~Ll~~~~~~g~~ 446 (851)
..+- ..+.--..+|..-+.+-.+..+++.|+++++++....-.+ +..+|..+++.....|-+
T Consensus 415 ~V~y-~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 415 KVPY-KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred cCCc-cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 6532 2221124567777777778889999999998875431111 234567777777788999
Q ss_pred HHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHh---cCChHHHHHH
Q 038852 447 DDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDF-LIYDVVVRGLCN---EGLFDMSKDI 522 (851)
Q Consensus 447 ~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~-~~~~~ll~a~~~---~g~~~~A~~~ 522 (851)
+....+|+++++..+.......| .+..+..+.-++++.++|++-+..-.-|+. ..|+..+.-+.+ ....+.|..+
T Consensus 494 estk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 99999999999987654444333 445566777788999999887766334443 366666665543 3468899999
Q ss_pred HHHHHHcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHhhhh
Q 038852 523 VDQMMKYGVGITPALQDF--VRETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 523 ~~~m~~~g~~~~~~~~~~--L~~~~~~~G~~~eA~~ll~~~~~ 563 (851)
|+.+++ +.++...-+.+ .+.+-.+-|....|+.++++...
T Consensus 573 FEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 573 FEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999998 55544332222 33334455666777777766543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.8e-16 Score=164.25 Aligned_cols=262 Identities=18% Similarity=0.288 Sum_probs=76.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 038852 144 AIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD 223 (851)
Q Consensus 144 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~ 223 (851)
.+...+.+.|++++|++++++.+.......|...|..+...+...+++++|++.+++++..+.. +...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~--~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA--NPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccc-cc
Confidence 3455556666666666666443332211223444555555556666666666666666655433 33445555555 56
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CccchhhHHHHHHHHHHcCCHHHHHH
Q 038852 224 AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRC-LVYDGVVNATFMEWWFNQGKDKEAMQ 302 (851)
Q Consensus 224 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~-~~~d~~~~~~li~~~~~~g~~~~A~~ 302 (851)
.+++++|++++++..+.. .+...+..++..+...++++++.++++++.... ...+..+|..++.++.+.|+.++|++
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666655442 244455556666666666666666666655322 22345555566666666666666666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 303 SYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 303 l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
+|+++++.++. |..+.+.++..+...|+.+++.++++...+.. ++ +...+..++.+|...|+.++|+.+|+++
T Consensus 168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~----~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA--PD----DPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HT----SCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cC----HHHHHHHHHHHhcccccccccccccccc
Confidence 66666665432 34455556666666666666666665555432 11 3345556666666666666666666666
Q ss_pred ccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038852 383 GTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREIS 422 (851)
Q Consensus 383 ~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 422 (851)
....+. |......++.++...|+.++|.++..++.
T Consensus 241 ~~~~p~-----d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 241 LKLNPD-----DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHSTT------HHHHHHHHHHHT----------------
T ss_pred cccccc-----ccccccccccccccccccccccccccccc
Confidence 554443 55566666666666666666666655543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.4e-13 Score=147.61 Aligned_cols=290 Identities=15% Similarity=0.148 Sum_probs=222.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHH--HHHHHHHHHc
Q 038852 111 VQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSY--NNLINTYCDE 188 (851)
Q Consensus 111 l~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~--~~Li~~~~~~ 188 (851)
.......||++.|++.+.+.....-. ....|.....+..+.|++++|.+.|.++.+.. ++.... ......+...
T Consensus 91 gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~---~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 91 ALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELA---DNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHC
Confidence 33445579999999888876543211 12233333444478999999999999996632 443322 2447788999
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCC
Q 038852 189 GKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADS-------LVYNNLISGFLNLGN 261 (851)
Q Consensus 189 g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~~~~~Li~~~~~~g~ 261 (851)
|+++.|++.++++.+.+|. +..++..++.+|.+.|++++|++++..+.+.+...+. .+|..++.......+
T Consensus 167 g~~~~Al~~l~~~~~~~P~--~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPR--HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred CCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999998877 7789999999999999999999999999998765222 133334444445556
Q ss_pred HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 038852 262 LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQ 341 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~ 341 (851)
.+...++++.+.+.- ..+..+...++..+...|+.++|.+++++.++... +... .++.+.+..++.+++++.+++
T Consensus 245 ~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~--~~~l--~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 245 SEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY--DERL--VLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CHHH--HHHHhhccCCChHHHHHHHHH
Confidence 666666666654432 23778889999999999999999999999998543 3322 234444566999999999999
Q ss_pred HHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 342 MLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREI 421 (851)
Q Consensus 342 m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 421 (851)
.++.. |+ |...+..++..|.+.+++++|.+.|+++.... |+...|..+..++.+.|+.++|.+++++.
T Consensus 320 ~lk~~--P~----~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~------P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 320 QIKQH--GD----TPLLWSTLGQLLMKHGEWQEASLAFRAALKQR------PDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHhhC--CC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99854 43 88899999999999999999999999997653 37788889999999999999999999987
Q ss_pred Hh
Q 038852 422 ST 423 (851)
Q Consensus 422 ~~ 423 (851)
+.
T Consensus 388 l~ 389 (398)
T PRK10747 388 LM 389 (398)
T ss_pred Hh
Confidence 64
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-12 Score=130.19 Aligned_cols=292 Identities=13% Similarity=0.175 Sum_probs=172.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCCh
Q 038852 114 LIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN--IVSYNNLINTYCDEGKV 191 (851)
Q Consensus 114 l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd--~~~~~~Li~~~~~~g~~ 191 (851)
++-.+..++|+++|-+++..+ .-+..+-.+|.+.|.+.|..|.|+++...+++..+..-+ ......|+.-|...|-+
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 334556677777777776543 234455556677777777777777777776554332221 22445566667777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 038852 192 DEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADS----LVYNNLISGFLNLGNLEKANE 267 (851)
Q Consensus 192 ~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~Li~~~~~~g~~~~A~~ 267 (851)
|.|+++|..+.+.+.+ -..+...|+..|-...+|++|+++-+++.+.+..... ..|.-|...+....++++|+.
T Consensus 124 DRAE~~f~~L~de~ef--a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 124 DRAEDIFNQLVDEGEF--AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hHHHHHHHHHhcchhh--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 7777777776654433 3446666777777777777777777777666543222 245555555556667777777
Q ss_pred HHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 038852 268 LFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQ 347 (851)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~ 347 (851)
+++++...+.+ .+..-..+.+.+...|++..|++.++.+++.+...-..+...|..+|...|+.++.+..+.++.+...
T Consensus 202 ~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 202 LLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 77777766554 45555566666777777777777777777776655556666677777777777777777777666433
Q ss_pred CCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 038852 348 PPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCE---NEMLEEAEKLLREIS 422 (851)
Q Consensus 348 ~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~---~g~~~~A~~l~~~m~ 422 (851)
. ......+........-.+.|..++.+-+... |+...+..|+..-.. .|...+-+.++++|+
T Consensus 281 g-------~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~------Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 281 G-------ADAELMLADLIELQEGIDAAQAYLTRQLRRK------PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred C-------ccHHHHHHHHHHHhhChHHHHHHHHHHHhhC------CcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 2 2233334443334444455555444433221 255556666655432 223344444444444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-12 Score=130.73 Aligned_cols=292 Identities=15% Similarity=0.149 Sum_probs=175.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-Cccc--hhhHHHHHHHHHHcCCHHHH
Q 038852 224 AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRC-LVYD--GVVNATFMEWWFNQGKDKEA 300 (851)
Q Consensus 224 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~-~~~d--~~~~~~li~~~~~~g~~~~A 300 (851)
.+..++|+++|-+|++.+.. ...+..+|++.|.+.|+.|+|+++...+.+.- ...+ ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 45667777777777765433 44555667777777777777777777666541 1111 23334455667777777777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHH
Q 038852 301 MQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFK 380 (851)
Q Consensus 301 ~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~ 380 (851)
+++|..+.+.+. .-....-.|+..|-...+|++|+++-+++.+.+..+.... -...|..|+..+....+++.|+.+++
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e-IAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE-IAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH-HHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 777777766432 2224566678888888888888888888777554432110 12345566666666777777777777
Q ss_pred HhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 381 KAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 381 ~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
++...++. .+..-..+.+.+...|++..|++.++.+.+.+..--..+...|..+|...|+.++.+.++.++.+..
T Consensus 205 kAlqa~~~-----cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 205 KALQADKK-----CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHhhCcc-----ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 77666544 4455555667777777777777777777766433334566677777777777777777777777654
Q ss_pred CccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHH
Q 038852 461 LRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCN---EGLFDMSKDIVDQMM 527 (851)
Q Consensus 461 ~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~---~g~~~~A~~~~~~m~ 527 (851)
...+.. .++........-.+.|..++.+-+.+ +|+...+..++..-.. .|...+-+.++.+|+
T Consensus 280 ~g~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 280 TGADAE--LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred CCccHH--HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 333322 22333333444445555555554443 5666666666655432 233444444444444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-12 Score=137.47 Aligned_cols=283 Identities=14% Similarity=0.066 Sum_probs=208.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHH
Q 038852 210 SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFME 289 (851)
Q Consensus 210 ~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~ 289 (851)
+.+.....+.-|...+++.+.+++++++.+...- ....+..-|.++.+.|+..+-..+-.++++..+. ...+|..++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpf-h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPF-HLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC-CcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHH
Confidence 5566667777777888888888888888877433 5555666666788888877777777777776555 6777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHc
Q 038852 290 WWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH 369 (851)
Q Consensus 290 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~ 369 (851)
.|...|++.+|.++|.+....+.... ..|..++..|.-.+..|.|+..|..+-+.-.. ...-+..++.-|.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fg-paWl~fghsfa~e~EhdQAmaaY~tAarl~~G------~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFG-PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG------CHLPSLYLGMEYMRT 393 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcccc-HHHHHHhHHhhhcchHHHHHHHHHHHHHhccC------CcchHHHHHHHHHHh
Confidence 88888888888888888776654433 47888888888888888888888877663211 233455667778888
Q ss_pred CChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHHc
Q 038852 370 GKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTK--SLSP----DVTTFRTLIDAYLKV 443 (851)
Q Consensus 370 g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p----d~~~~~~Ll~~~~~~ 443 (851)
++++.|.++|..+....+. |...++.+..+....+.+.+|..+|...+.. .+.+ -..+++.|+.+|.+.
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~-----Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPS-----DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred ccHHHHHHHHHHHHhcCCC-----cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 8888888888888777666 7777788877777788888888888876621 0111 234578888888889
Q ss_pred CCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038852 444 ERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRG 509 (851)
Q Consensus 444 g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a 509 (851)
+.+++|+..|++++.... .+..++..++-+|...|+++.|++.|.+.+.. +||..+-..++..
T Consensus 469 ~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKL 531 (611)
T ss_pred hhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHH
Confidence 999999999988888753 35566667888888889999999888887764 6666665555553
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-11 Score=134.66 Aligned_cols=445 Identities=13% Similarity=0.087 Sum_probs=302.5
Q ss_pred HHcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 038852 115 IRAGDLDAASYL----ARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK 190 (851)
Q Consensus 115 ~~~g~~~~A~~l----~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~ 190 (851)
+-..+.+++.-. ++++....+.-|..+|..|.-++..+|+++.+.+.|++.+. +.......|+.+...|...|.
T Consensus 295 i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~ 372 (799)
T KOG4162|consen 295 IPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGS 372 (799)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhcc
Confidence 344455555433 33333334566889999999999999999999999999854 233456789999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcC--C--CCCHHHHHHHHHHHHhc------
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFV-DAGRIGEAVDLLRDMLSRQ--L--GADSLVYNNLISGFLNL------ 259 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~-~~g~~~~A~~l~~~m~~~g--~--~pd~~~~~~Li~~~~~~------ 259 (851)
-..|+.++++.....+...|...+....+.|. +.+.+++++++-.+++... . ......|..++-+|...
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 99999999988776533334555555555555 4678888888888887721 1 12345566666666432
Q ss_pred -----CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHH
Q 038852 260 -----GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEE 334 (851)
Q Consensus 260 -----g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~ 334 (851)
....+++..++++++.+.. |..+...+.--|+..++++.|++..++.++.+...+...|..|+.++...+++.+
T Consensus 453 ~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 1245677888888887766 6666666677799999999999999999999888899999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCC-----------------CC-------C
Q 038852 335 AQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPK-----------------SK-------P 390 (851)
Q Consensus 335 A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~-----------------~~-------~ 390 (851)
|+.+.+.+++.... |......-+..-...++.++++.....+...-. .. .
T Consensus 532 Al~vvd~al~E~~~------N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q 605 (799)
T KOG4162|consen 532 ALDVVDAALEEFGD------NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQ 605 (799)
T ss_pred HHHHHHHHHHHhhh------hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccc
Confidence 99999998874221 222222233333345555555544332211100 00 0
Q ss_pred CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q 038852 391 FAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLS--PD------VTTFRTLIDAYLKVERIDDALELFNRMVESGLR 462 (851)
Q Consensus 391 ~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd------~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~ 462 (851)
..-...++..+...... +.+.+..-.. +.+..+. ++ ...|......+.+.++.++|..++.++......
T Consensus 606 ~~~a~s~sr~ls~l~a~--~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l 682 (799)
T KOG4162|consen 606 PTDAISTSRYLSSLVAS--QLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL 682 (799)
T ss_pred ccccchhhHHHHHHHHh--hhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh
Confidence 00011122222111110 0000000000 1111111 12 235667778888999999999999998887533
Q ss_pred cchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH--HHHHHHHcCCCCCHHHHHH
Q 038852 463 VVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKD--IVDQMMKYGVGITPALQDF 540 (851)
Q Consensus 463 ~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~--~~~~m~~~g~~~~~~~~~~ 540 (851)
....|......+...|.+++|.+.|......+.. +.....++..++.+.|+-..|.. ++.++++.+ ..+.+.|..
T Consensus 683 -~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~ 759 (799)
T KOG4162|consen 683 -SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYY 759 (799)
T ss_pred -hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 3444455677888899999999999998876443 55678889999999998888887 999999877 467899999
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhcCCCCCCCCCC
Q 038852 541 VRETFGKAGRGEEIERVLNADRWGYAAPVPPPRT 574 (851)
Q Consensus 541 L~~~~~~~G~~~eA~~ll~~~~~~~~~~p~~~~~ 574 (851)
++.++.+.|+.+.|.+.|......-.-.|--.|.
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs 793 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQLEESNPVLPFS 793 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhhccCCCccccc
Confidence 9999999999999999999988766655554453
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-11 Score=128.25 Aligned_cols=288 Identities=15% Similarity=0.138 Sum_probs=206.2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHH
Q 038852 115 IRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEG 194 (851)
Q Consensus 115 ~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A 194 (851)
+..|+|..|+++..+..+.+.. ....|..-+.+.-..||++.|-.++.++-+..+ ..+...+.+..+.....||++.|
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~-~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG-DDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHhCCCchhH
Confidence 3568999999988886655533 234455555556678999999999988854322 34566677778888889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 038852 195 MNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADS-------LVYNNLISGFLNLGNLEKANE 267 (851)
Q Consensus 195 ~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~~~~~Li~~~~~~g~~~~A~~ 267 (851)
..-++.+.+..+. +.........+|.+.|++.+...++.++.+.+.-.|. .+|..+++-+...++.+.-..
T Consensus 173 ~~~v~~ll~~~pr--~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 173 RENVDQLLEMTPR--HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred HHHHHHHHHhCcC--ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 9999999888766 7778888999999999999999999999988866454 356666666666666666555
Q ss_pred HHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 038852 268 LFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQ 347 (851)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~ 347 (851)
.++..-.+ ..-+..+...++.-+.++|+.++|.++.++.++...+++ .. ....+.+-++.+.-++..++.++...
T Consensus 251 ~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 251 WWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred HHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhCC
Confidence 66655433 223566777777778888888888888888887766544 11 22334566777777777777766433
Q ss_pred CCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 348 PPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREIST 423 (851)
Q Consensus 348 ~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 423 (851)
. +...+..|+..|.+.+.|.+|.++|+.++... ++..+|+.+.++|.+.|+.++|..++++.+.
T Consensus 326 ~------~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 326 E------DPLLLSTLGRLALKNKLWGKASEALEAALKLR------PSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred C------ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC------CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2 56777788888888888888888887765432 2677777777777778887777777776653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-12 Score=130.23 Aligned_cols=392 Identities=13% Similarity=0.118 Sum_probs=251.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG 189 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g 189 (851)
+...+...|++++|...++.+.... .++...+..|..++.-.|.|.+|..+-.++- .+...-..|.....+.+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~------k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAP------KTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCC------CChHHHHHHHHHHHHhC
Confidence 5677888999999999999877644 6677777778888888999999998877652 13333444555555667
Q ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 190 KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELF 269 (851)
Q Consensus 190 ~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~ 269 (851)
+-++-..+...+-. ...--..|+......-.+.+|+++|.+++..+.. -...-..++-+|.+..-++-+.+++
T Consensus 136 dEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e-y~alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 136 DEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE-YIALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred cHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh-hhhhHHHHHHHHHhcchhhhHHHHH
Confidence 76665555554432 1123334555555555678888888887765322 1122233555667777777777777
Q ss_pred HHHHhcCCccchhhHHHHHHHHHHc--CCH---------------------------------HHHHHHHHHHHHhcCCC
Q 038852 270 DELKQRCLVYDGVVNATFMEWWFNQ--GKD---------------------------------KEAMQSYKSLMERNFRM 314 (851)
Q Consensus 270 ~~~~~~~~~~d~~~~~~li~~~~~~--g~~---------------------------------~~A~~l~~~~~~~~~~~ 314 (851)
+..++.-.. +....+..+....+. |+. +.|+.++-.+.+.-
T Consensus 209 ~vYL~q~pd-StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I--- 284 (557)
T KOG3785|consen 209 KVYLRQFPD-STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI--- 284 (557)
T ss_pred HHHHHhCCC-cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhC---
Confidence 766654322 222333322222221 211 22222222222111
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcC-------ChHHHHHHHHHhccCCC
Q 038852 315 TPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHG-------KFSEAIETFKKAGTHPK 387 (851)
Q Consensus 315 ~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g-------~~~~A~~~~~~~~~~~~ 387 (851)
+..-..|+-.|.+.+++.+|..+.+++. |. ++.-|..-+..+...| .+.-|...|..+.....
T Consensus 285 -PEARlNL~iYyL~q~dVqeA~~L~Kdl~-----Pt----tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ 354 (557)
T KOG3785|consen 285 -PEARLNLIIYYLNQNDVQEAISLCKDLD-----PT----TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESAL 354 (557)
T ss_pred -hHhhhhheeeecccccHHHHHHHHhhcC-----CC----ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccc
Confidence 1233446667889999999999887653 22 3444444444444444 35566677766644322
Q ss_pred CCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhH
Q 038852 388 SKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSF 467 (851)
Q Consensus 388 ~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 467 (851)
... .+..-.++..++.-...+|+.+..++.+...-...|.+.+ .+..+++..|++.+|+++|-++....++....+
T Consensus 355 ecD---TIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y 430 (557)
T KOG3785|consen 355 ECD---TIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILY 430 (557)
T ss_pred ccc---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHH
Confidence 222 2233455666677777899999999988876444444444 488999999999999999999988888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 038852 468 GTKVFNELITKGKVAECAPILTKMGEKDPKPDFL-IYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQ 538 (851)
Q Consensus 468 ~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~-~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 538 (851)
..+|.++|+++++.+-|.+++-++...+ +.. .+..+...|.+.+.+--|.+.|+.+...+ |+++.|
T Consensus 431 ~s~LArCyi~nkkP~lAW~~~lk~~t~~---e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnW 497 (557)
T KOG3785|consen 431 KSMLARCYIRNKKPQLAWDMMLKTNTPS---ERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPENW 497 (557)
T ss_pred HHHHHHHHHhcCCchHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCcccc
Confidence 8899999999999999988877664422 333 34445667889999988999999887754 455444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.7e-13 Score=132.20 Aligned_cols=230 Identities=14% Similarity=0.134 Sum_probs=124.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038852 179 NNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN 258 (851)
Q Consensus 179 ~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~ 258 (851)
+-+.++|.+.|.+.+|.+.|...++.. +-.+||..|.++|.+.+..+.|+.+|.+.++.-+. |+.....+.+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~---~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF---PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC---CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHHHH
Confidence 455666666666666666666665532 34446666666666666666666666666554222 44444455566666
Q ss_pred cCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 038852 259 LGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQAL 338 (851)
Q Consensus 259 ~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l 338 (851)
.++.++|.++|+++++.... ++.....+...|+-.++.+-|+.+|++++..|+. +...|+.+.-+|...+.+|-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 66666666666666554433 4444444444455555555555555555555542 334455555555555555555555
Q ss_pred HHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 339 FEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLL 418 (851)
Q Consensus 339 ~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~ 418 (851)
|.+++.....++. ..++|.+|+.+....||+..|.+.|+-++..+.. +...+|.|...-.+.|++++|..++
T Consensus 381 f~RAlstat~~~~---aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-----h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 381 FQRALSTATQPGQ---AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-----HGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred HHHHHhhccCcch---hhhhhhccceeEEeccchHHHHHHHHHHhccCcc-----hHHHHHhHHHHHhhcCchHHHHHHH
Confidence 5555543333322 3445555555555555555555555555444333 4455555555555555555555555
Q ss_pred HHHH
Q 038852 419 REIS 422 (851)
Q Consensus 419 ~~m~ 422 (851)
....
T Consensus 453 ~~A~ 456 (478)
T KOG1129|consen 453 NAAK 456 (478)
T ss_pred HHhh
Confidence 5444
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-10 Score=118.79 Aligned_cols=394 Identities=11% Similarity=0.070 Sum_probs=263.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRA-KRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
-...+.++...++-+.|+.++....... ...--|.++..+.+. ++-.++.--+.+.+....+ .. ..|.++
T Consensus 100 ~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~-----aL-~~i~~l 170 (564)
T KOG1174|consen 100 RRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPM-----AL-QVIEAL 170 (564)
T ss_pred HHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHhcch-----HH-HHHHHH
Confidence 3456777778888888888776654322 222333444444433 3333444444544443211 11 112222
Q ss_pred HHcC--ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcC
Q 038852 186 CDEG--KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGF--VDAGRIGEAVDLLRDMLSRQ-LGADSLVYNNLISGFLNLG 260 (851)
Q Consensus 186 ~~~g--~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~--~~~g~~~~A~~l~~~m~~~g-~~pd~~~~~~Li~~~~~~g 260 (851)
.+.+ -++.+-.....+ . ..++..+...-+.++ +-.++...|...+-.+.... +.-|+.....+++++...|
T Consensus 171 l~l~v~g~e~~S~~m~~~-~---~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~G 246 (564)
T KOG1174|consen 171 LELGVNGNEINSLVMHAA-T---VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNG 246 (564)
T ss_pred HHHhhcchhhhhhhhhhe-e---cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhc
Confidence 2211 111111111111 1 112222222223333 33444444444443333222 4557889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 038852 261 NLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFE 340 (851)
Q Consensus 261 ~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~ 340 (851)
+.++|+..|+.....++. +..........+...|+++....+...+....- .+...|..-+..+...++++.|+.+-+
T Consensus 247 dn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 247 DYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred CchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 999999999998876543 344444455557788999888888887776541 233445555666677899999999999
Q ss_pred HHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038852 341 QMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLRE 420 (851)
Q Consensus 341 ~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 420 (851)
+.++.+.. +...|..-+.++...|+.++|.-.|+.+....+. +..+|..|+.+|...|++.||..+-+.
T Consensus 325 K~I~~~~r------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-----rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 325 KCIDSEPR------NHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-----RLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred HHhccCcc------cchHHHhccHHHHhccchHHHHHHHHHHHhcchh-----hHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 99885433 6778888899999999999999999999877655 889999999999999999999988887
Q ss_pred HHhCCCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC
Q 038852 421 ISTKSLSPDVTTFRTLI-DAYL-KVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKP 498 (851)
Q Consensus 421 m~~~g~~pd~~~~~~Ll-~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~p 498 (851)
..+. +.-+..+...++ ..|. .-.--++|.+++++.++..+.-... .+.+...+...|++++++.++++.+.. .+
T Consensus 394 ~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A-V~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~ 469 (564)
T KOG1174|consen 394 TIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA-VNLIAELCQVEGPTKDIIKLLEKHLII--FP 469 (564)
T ss_pred HHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHH-HHHHHHHHHhhCccchHHHHHHHHHhh--cc
Confidence 7664 444667777664 3333 3344688999999998876433333 345778889999999999999998874 67
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038852 499 DFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG 530 (851)
Q Consensus 499 d~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g 530 (851)
|....+.|.+.+...+.+.+|++.|..+++.+
T Consensus 470 D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 470 DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999988754
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.9e-11 Score=128.07 Aligned_cols=428 Identities=11% Similarity=0.072 Sum_probs=224.5
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
.+++.-++.+...+++++|.....+++..+ +.|...+..-+-+++..++|++|+++.+.-. ....+.+.+..-+.+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~---~~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNG---ALLVINSFFFEKAYC 88 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc---hhhhcchhhHHHHHH
Confidence 466777888899999999999999988765 4566677777778899999999997766431 111122222344556
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCCH
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSL--VYNNLISGFLNLGNL 262 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--~~~~Li~~~~~~g~~ 262 (851)
..+.++.|+|+..++-+ + ..+..+...-+..+.+.|++++|+++|+.+.+.+.+ |.. .-.+++.+-. .
T Consensus 89 ~Yrlnk~Dealk~~~~~-~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~~a----~ 158 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGL-D----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAVAA----A 158 (652)
T ss_pred HHHcccHHHHHHHHhcc-c----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHH----h
Confidence 67899999999999833 2 225557777788899999999999999999887543 221 1111111111 0
Q ss_pred HHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-------CCCH-------HHHHHHHHHHHh
Q 038852 263 EKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF-------RMTP-------ATCNTLLEVLLK 328 (851)
Q Consensus 263 ~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-------~~~~-------~~~~~Li~~~~~ 328 (851)
-.+- +.+.. ......+-..+......+...|+|.+|+++++..++.+. ..+. .+-.-|..++-.
T Consensus 159 l~~~-~~q~v-~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 159 LQVQ-LLQSV-PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hhHH-HHHhc-cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 0110 11111 111111233344445556677777777777777632110 0000 112234555666
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHH------------------------------------------
Q 038852 329 HEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNEC------------------------------------------ 366 (851)
Q Consensus 329 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~------------------------------------------ 366 (851)
.|+.++|..+|..++.....-. +.-....|+|+.+-
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~D~--~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPADE--PSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred hcchHHHHHHHHHHHHhcCCCc--hHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776543311 00111222222211
Q ss_pred ---HHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038852 367 ---FKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYC--ENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYL 441 (851)
Q Consensus 367 ---~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~ 441 (851)
...+..+.+.++....... .|. ..+.+++..+. +.....+|.+++....+....-...+...++....
T Consensus 315 lL~l~tnk~~q~r~~~a~lp~~------~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 315 LLALFTNKMDQVRELSASLPGM------SPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHHHhhhHHHHHHHHHhCCcc------Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 1111222222222111100 001 11222222211 11234455555555444321112334445555566
Q ss_pred HcCCHHHHHHHHH--------HHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHH----
Q 038852 442 KVERIDDALELFN--------RMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEK--DPKPDFLIYDVVV---- 507 (851)
Q Consensus 442 ~~g~~~~A~~~~~--------~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~--~~~pd~~~~~~ll---- 507 (851)
..|+++.|++++. .+.+.+..|... ..+...|.+.++.+.|..++.+.+.. .-........+++
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 6677777777766 444443333322 23555666666666676666665542 0111112222222
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 038852 508 RGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNAD 561 (851)
Q Consensus 508 ~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~ 561 (851)
..-.+.|..++|..+++++++.+ ..+..+...++-+|++. +.+.|+.+-+.+
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 22234577777777777776643 34555555666666554 345555554443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-10 Score=125.21 Aligned_cols=395 Identities=14% Similarity=0.138 Sum_probs=205.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHH
Q 038852 114 LIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDE 193 (851)
Q Consensus 114 l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~ 193 (851)
+...|+.++|....+..++.+ ..+.+.|..++-.+...++|++|++.|..++.... .|...|.-|...-+..|+++.
T Consensus 51 L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~--dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK--DNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhhh
Confidence 344455555555555555433 22344555555555555556666666655544221 234444444444445555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHH------HHHHhcCCHHHHH
Q 038852 194 GMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQL-GADSLVYNNLI------SGFLNLGNLEKAN 266 (851)
Q Consensus 194 A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~~~~~Li------~~~~~~g~~~~A~ 266 (851)
..+.-...++..+. ....|..++.++.-.|++..|.+++++...... .++...|.... ....+.|.+++|.
T Consensus 128 ~~~tr~~LLql~~~--~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~al 205 (700)
T KOG1156|consen 128 YLETRNQLLQLRPS--QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKAL 205 (700)
T ss_pred HHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 55554444444322 344555555555555555555555555544321 22333222211 2223444445554
Q ss_pred HHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC---------------
Q 038852 267 ELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEK--------------- 331 (851)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~--------------- 331 (851)
+.+...... +......-..-...+.+.+++++|..+|..++..++. +...|..+..++.+..+
T Consensus 206 e~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 206 EHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 444433221 1112222233344455555555555555555554321 11112222222211111
Q ss_pred --------------------HHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHH----HHHhccC--
Q 038852 332 --------------------KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIET----FKKAGTH-- 385 (851)
Q Consensus 332 --------------------~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~----~~~~~~~-- 385 (851)
.+..-+++..++..|+.+ ++..+...|-.-...+-..++ ...+...
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~--------vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~ 355 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS--------VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGM 355 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc--------hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccC
Confidence 122223334444444432 444444444332222211111 1111110
Q ss_pred ----CCCCCCccCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 386 ----PKSKPFAMDVA--GYNNIIARYCENEMLEEAEKLLREISTKSLSPD-VTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 386 ----~~~~~~~~d~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
+...--.|... ++..++..|-+.|+++.|+.+++..+.. .|+ +..|..-++++...|++++|..+++++.+
T Consensus 356 f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 356 FNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred CCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 00000123333 4456777888999999999999999864 455 45677777899999999999999999999
Q ss_pred cCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH--------HHHH--HHHHHHhcCChHHHHHHHHHHHH
Q 038852 459 SGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFL--------IYDV--VVRGLCNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 459 ~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~--------~~~~--ll~a~~~~g~~~~A~~~~~~m~~ 528 (851)
.+ .++..+....+....++++.++|.+++.+..+.|. +.. .|-. -..+|.+.|++.+|++-|..+.+
T Consensus 434 lD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 434 LD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred cc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 87 45666666777888999999999999999988764 221 1211 23567788888888776666554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.1e-12 Score=147.81 Aligned_cols=252 Identities=15% Similarity=0.112 Sum_probs=193.5
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 189 GKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA---------GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 189 g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~---------g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
+++++|+.+|+++++.+|. +...|..++.+|... +++++|+..++++++.+.. +..++..++.++...
T Consensus 275 ~~~~~A~~~~~~Al~ldP~--~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN--SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc
Confidence 4568999999999998876 677787777766532 3489999999999998776 888999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 038852 260 GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALF 339 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~ 339 (851)
|++++|+..|+++++.+.. +...+..++.+|...|++++|+..|+++++.++... ..+..++.++...|++++|+..+
T Consensus 352 g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~-~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA-AAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999999998766 677888889999999999999999999999876533 33334555677789999999999
Q ss_pred HHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 340 EQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLR 419 (851)
Q Consensus 340 ~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 419 (851)
+++++.. .|+ +...+..++.+|...|++++|+..++++....+. +...++.+...|+..| ++|...++
T Consensus 430 ~~~l~~~-~p~----~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g--~~a~~~l~ 497 (553)
T PRK12370 430 DELRSQH-LQD----NPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-----GLIAVNLLYAEYCQNS--ERALPTIR 497 (553)
T ss_pred HHHHHhc-ccc----CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-----hHHHHHHHHHHHhccH--HHHHHHHH
Confidence 9988653 232 5667888999999999999999999988655433 5566677777777777 47777777
Q ss_pred HHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 420 EISTKS-LSPDVTTFRTLIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 420 ~m~~~g-~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
++.+.. ..++...+ +...|.-.|+-+.+..+ +++.+.+
T Consensus 498 ~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 498 EFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 766532 12222222 44555667777777766 7777764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.2e-13 Score=132.42 Aligned_cols=238 Identities=13% Similarity=0.057 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHH
Q 038852 212 NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWW 291 (851)
Q Consensus 212 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~ 291 (851)
.--+-+.++|.+.|.+.+|.+.|...++.- +-..||..|.++|.+.+..+.|+.+|.+.++.-+. |+.....+.+++
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHH
Confidence 334678999999999999999999998863 46678888999999999999999999998886544 777778888999
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCC
Q 038852 292 FNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGK 371 (851)
Q Consensus 292 ~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~ 371 (851)
...++.++|.++|+.+++... .++.....+...|.-.++.+.|+.+|++++..|+. +.+.|++++.+|.-.+.
T Consensus 301 eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~------speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ------SPELFCNIGLCCLYAQQ 373 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC------ChHHHhhHHHHHHhhcc
Confidence 999999999999999998753 34556666778888899999999999999999887 78999999999999999
Q ss_pred hHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 038852 372 FSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALE 451 (851)
Q Consensus 372 ~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~ 451 (851)
+|-++..|.++.......+. -..+|..|.......||+..|.+.|+-.+..+. -+...++.|+..-.+.|+++.|..
T Consensus 374 ~D~~L~sf~RAlstat~~~~--aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQ--AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred hhhhHHHHHHHHhhccCcch--hhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHH
Confidence 99999999998765443332 345588898888899999999999998887533 257889999999999999999999
Q ss_pred HHHHHHHcCCc
Q 038852 452 LFNRMVESGLR 462 (851)
Q Consensus 452 ~~~~m~~~~~~ 462 (851)
++..+....+.
T Consensus 451 ll~~A~s~~P~ 461 (478)
T KOG1129|consen 451 LLNAAKSVMPD 461 (478)
T ss_pred HHHHhhhhCcc
Confidence 99988876543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-12 Score=150.38 Aligned_cols=252 Identities=15% Similarity=0.043 Sum_probs=194.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcC
Q 038852 225 GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN---------LGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQG 295 (851)
Q Consensus 225 g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~---------~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g 295 (851)
+++++|+++|+++++.... +...|..++.+|.. .+++++|+..++++++.+.. +...+..+..++...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 4689999999999998665 67778777776653 24589999999999998776 7888889999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHH
Q 038852 296 KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEA 375 (851)
Q Consensus 296 ~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A 375 (851)
++++|+..|+++++.++. +...+..++.+|...|++++|+..|+++++.+ |+ +...+..++.++...|++++|
T Consensus 353 ~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~----~~~~~~~~~~~~~~~g~~eeA 425 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD--PT----RAAAGITKLWITYYHTGIDDA 425 (553)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC----ChhhHHHHHHHHHhccCHHHH
Confidence 999999999999998753 45678889999999999999999999999854 43 344455556667789999999
Q ss_pred HHHHHHhccCC-CCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038852 376 IETFKKAGTHP-KSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFN 454 (851)
Q Consensus 376 ~~~~~~~~~~~-~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~ 454 (851)
++.++++.... +. +...+..+..++...|++++|...++++... ...+...++.|...|+..| ++|...++
T Consensus 426 ~~~~~~~l~~~~p~-----~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g--~~a~~~l~ 497 (553)
T PRK12370 426 IRLGDELRSQHLQD-----NPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYCQNS--ERALPTIR 497 (553)
T ss_pred HHHHHHHHHhcccc-----CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhccH--HHHHHHHH
Confidence 99999986542 22 5566788889999999999999999998654 2223455666777777777 48888888
Q ss_pred HHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 038852 455 RMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKD 495 (851)
Q Consensus 455 ~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~ 495 (851)
++.+..-.-.... ..+...|.-.|+-+.+..+ +++.+.+
T Consensus 498 ~ll~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 498 EFLESEQRIDNNP-GLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHhhHhhcCc-hHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 8776422111111 1255667778888888777 8887763
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.4e-10 Score=116.13 Aligned_cols=431 Identities=11% Similarity=0.035 Sum_probs=275.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-------------------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRI-------------------RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQAD 170 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~-------------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 170 (851)
++........+..|...|..++.... .-+...-...+.+|...++-+.|+..+.......
T Consensus 49 l~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~- 127 (564)
T KOG1174|consen 49 LLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL- 127 (564)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-
Confidence 34444555566666666665543211 1233444556677777788888887776553321
Q ss_pred CCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 038852 171 IVPNIVSYNNLINTYCD-EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVY 249 (851)
Q Consensus 171 ~~pd~~~~~~Li~~~~~-~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 249 (851)
...-.|.++..+.+ .++-.++.--+.+.+...+. .... |.++.+.+ +..+...-..|-...+.++..+.
T Consensus 128 ---r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~-----aL~~-i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwl 197 (564)
T KOG1174|consen 128 ---RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPM-----ALQV-IEALLELG-VNGNEINSLVMHAATVPDHFDWL 197 (564)
T ss_pred ---cchhHHHHHHHHHhccccccHHHHhhhHHHHhcch-----HHHH-HHHHHHHh-hcchhhhhhhhhheecCCCccHH
Confidence 11122333333333 23333444445555544433 1111 11222111 00111111122222223222222
Q ss_pred HHHHH--HHHhcCCHHHHHHHHHHHHhc-CCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 038852 250 NNLIS--GFLNLGNLEKANELFDELKQR-CLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVL 326 (851)
Q Consensus 250 ~~Li~--~~~~~g~~~~A~~~~~~~~~~-~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~ 326 (851)
...+. +.+..++...|...+-.+... -+.-++.....+.++++..|+.++|+..|+.....++. +.......+..+
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL 276 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLL 276 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHH
Confidence 23333 334445555555554444333 23447889999999999999999999999998877641 223334445566
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHH
Q 038852 327 LKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYC 406 (851)
Q Consensus 327 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~ 406 (851)
...|+++....+...+...... ...-|..-+......++++.|+.+-++.+..... ++..|..-+.++.
T Consensus 277 ~~eg~~e~~~~L~~~Lf~~~~~------ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-----~~~alilKG~lL~ 345 (564)
T KOG1174|consen 277 GQEGGCEQDSALMDYLFAKVKY------TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-----NHEALILKGRLLI 345 (564)
T ss_pred HhccCHhhHHHHHHHHHhhhhc------chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-----cchHHHhccHHHH
Confidence 7889999988888888764211 3445666667777889999999999999887665 6777877788899
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHH-HHH-HHcCCHHHH
Q 038852 407 ENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVF-NEL-ITKGKVAEC 484 (851)
Q Consensus 407 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~-~~~-~~~g~~~~A 484 (851)
..|+.++|.-.|+...... +-+...|..|+.+|...|++.+|...-+...+.- ..+....+.+. .++ ..-.--++|
T Consensus 346 ~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred hccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHH
Confidence 9999999999999988652 2367899999999999999999998877776642 22233333221 222 223346889
Q ss_pred HHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038852 485 APILTKMGEKDPKPDF-LIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 485 ~~ll~~m~~~~~~pd~-~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~ 563 (851)
.+++++.++. .|+. ...+.+...|...|..++++.++++.+.. -+|......|++++...+.+.+|++.|.....
T Consensus 424 Kkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 424 KKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999988775 4443 35566778889999999999999999874 37788888899999999999999999998877
Q ss_pred cCCCCC
Q 038852 564 GYAAPV 569 (851)
Q Consensus 564 ~~~~~p 569 (851)
..|+..
T Consensus 500 ~dP~~~ 505 (564)
T KOG1174|consen 500 QDPKSK 505 (564)
T ss_pred cCccch
Confidence 666443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-11 Score=128.79 Aligned_cols=398 Identities=14% Similarity=0.116 Sum_probs=249.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHH
Q 038852 108 HNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLINTYC 186 (851)
Q Consensus 108 ~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~~~~ 186 (851)
..-..+.+..|+++.|+.+|.+++..... |.+.|..-..+|.+.|+|++|++--.+.++ +.|+ ...|..++.++.
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~---l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRR---LNPDWAKGYSRKGAALF 81 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHh---cCCchhhHHHHhHHHHH
Confidence 44567888999999999999999977644 888999999999999999999987777655 3455 457899999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH---HHHHHHHhcC---CCCCHHHHHHHHHHHH---
Q 038852 187 DEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAV---DLLRDMLSRQ---LGADSLVYNNLISGFL--- 257 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~---~l~~~m~~~g---~~pd~~~~~~Li~~~~--- 257 (851)
-.|+|++|+..|.+-++.++. |...+..|..++.......+.. .++..+...- .......|..++..+-
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~--n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPS--NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCc--hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 999999999999999998766 7788888888872211110000 0111110000 0000112222222221
Q ss_pred -------hcCCHHHHHHHHHHHH-----hcC-------Ccc----------------------chhhHHHHHHHHHHcCC
Q 038852 258 -------NLGNLEKANELFDELK-----QRC-------LVY----------------------DGVVNATFMEWWFNQGK 296 (851)
Q Consensus 258 -------~~g~~~~A~~~~~~~~-----~~~-------~~~----------------------d~~~~~~li~~~~~~g~ 296 (851)
....+..|...+.... ..+ ..| -..-...+++...+..+
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 1111112211111100 000 000 11234567777888889
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCC-ccCHHHHHHHHHHHHHcCChHHH
Q 038852 297 DKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQ-AVNSDTFNIMVNECFKHGKFSEA 375 (851)
Q Consensus 297 ~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-~~~~~~~~~L~~~~~~~g~~~~A 375 (851)
++.|++.|...++.+ -+..-++....+|...|++.+.+...++.++.|..-... ..-...+..++.+|.+.++++.|
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 999999999988887 455566778888999999998888888877765431000 00011233355567778889999
Q ss_pred HHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 038852 376 IETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDV-TTFRTLIDAYLKVERIDDALELFN 454 (851)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~Ll~~~~~~g~~~~A~~~~~ 454 (851)
+.+|.+.+..... -..+.+....+++++..+...-. .|+. .-...-+..+.+.|++.+|++.|.
T Consensus 318 i~~~~kaLte~Rt-------------~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 318 IKYYQKALTEHRT-------------PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HHHHHHHhhhhcC-------------HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 9999987654332 11222334455555555444332 2222 222333677778888888888888
Q ss_pred HHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038852 455 RMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG 530 (851)
Q Consensus 455 ~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g 530 (851)
++++.++ .+...|.....||.+.|.+..|++-.+..++.+.. ....|..=..++....+|++|++.|.+.++.+
T Consensus 383 eAIkr~P-~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 383 EAIKRDP-EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHhcCC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888773 34555555777888888888888887777776322 23344444455566677888888888877754
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-10 Score=118.64 Aligned_cols=290 Identities=14% Similarity=0.135 Sum_probs=169.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHH
Q 038852 224 AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQS 303 (851)
Q Consensus 224 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l 303 (851)
.|+|..|++++.+..+.+.. ....|..-+++.-..||.+.+-.++.++.+.....+..+...........||+..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 68888888888887777655 45667777778888888888888888888775555667777777888888888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCC--ccCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 038852 304 YKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQ--AVNSDTFNIMVNECFKHGKFSEAIETFKK 381 (851)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~--~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 381 (851)
++.+.+.+... ..+......+|.+.|++.....++.++.+.+.-.+.. .+...+|..++.-....+..+.-..+++.
T Consensus 176 v~~ll~~~pr~-~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPRH-PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 88888776543 3567778888888888888888888888876653210 00111233333333333333333333333
Q ss_pred hccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 038852 382 AGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGL 461 (851)
Q Consensus 382 ~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~ 461 (851)
.... .+.+...-..++.-+..+|+.++|.++.++.++...
T Consensus 255 ~pr~----------------------------------------lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~ 294 (400)
T COG3071 255 QPRK----------------------------------------LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW 294 (400)
T ss_pred ccHH----------------------------------------hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 3222 222333344444444445555555555544444443
Q ss_pred ccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038852 462 RVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFV 541 (851)
Q Consensus 462 ~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L 541 (851)
.+... ..-.+.+-++.+.-++..++..+.... +...+.+|...|.+.+.|.+|.++|+..++. .++...+..+
T Consensus 295 D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~l 367 (400)
T COG3071 295 DPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAEL 367 (400)
T ss_pred ChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHH
Confidence 33211 112233344444444444444333211 3345555555556666666666666655543 2555555556
Q ss_pred HHHHHhcCCHHHHHHHHHhhh
Q 038852 542 RETFGKAGRGEEIERVLNADR 562 (851)
Q Consensus 542 ~~~~~~~G~~~eA~~ll~~~~ 562 (851)
+++|.+.|+.++|.+++++..
T Consensus 368 a~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 368 ADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 666666666666666555554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.7e-11 Score=127.34 Aligned_cols=381 Identities=15% Similarity=0.117 Sum_probs=247.0
Q ss_pred CCCccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 038852 102 GPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPT-VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNN 180 (851)
Q Consensus 102 ~~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~ 180 (851)
+..+-|.++..+++..|+|++|+.-..+.++. .|+ ...|+.++.++.-.|+|++|+..|.+-++... .|...++.
T Consensus 34 ~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~--~n~~L~~g 109 (539)
T KOG0548|consen 34 TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDP--SNKQLKTG 109 (539)
T ss_pred CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCC--chHHHHHh
Confidence 34567889999999999999999887777644 444 57899999999999999999999999887543 45677888
Q ss_pred HHHHHHHcCChHHHH---HHHHHHHHhCCC---CCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHH-----h
Q 038852 181 LINTYCDEGKVDEGM---NVFRRIIETAPV---GPSSNTYRHLTKGFVD----------AGRIGEAVDLLRDML-----S 239 (851)
Q Consensus 181 Li~~~~~~g~~~~A~---~l~~~~~~~~~~---~p~~~~~~~Li~~~~~----------~g~~~~A~~l~~~m~-----~ 239 (851)
|..++.......+.. .++..+ ..++. ......|..++..+-+ ..++..|...+.... .
T Consensus 110 l~~a~~~~~~~~~~~~~p~~~~~l-~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~ 188 (539)
T KOG0548|consen 110 LAQAYLEDYAADQLFTKPYFHEKL-ANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYA 188 (539)
T ss_pred HHHhhhHHHHhhhhccCcHHHHHh-hcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccc
Confidence 888772221110000 111111 00000 0011123333222211 011111211111100 0
Q ss_pred c-------CCCC------------C----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHH
Q 038852 240 R-------QLGA------------D----------SLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEW 290 (851)
Q Consensus 240 ~-------g~~p------------d----------~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~ 290 (851)
. +..| | ..-...++++..+..+++.|++.|...++.. -+...++....+
T Consensus 189 ~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~ 266 (539)
T KOG0548|consen 189 SGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAV 266 (539)
T ss_pred cccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHH
Confidence 0 0001 1 1235568888889999999999999999887 477888888999
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHH
Q 038852 291 WFNQGKDKEAMQSYKSLMERNFRMT------PATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVN 364 (851)
Q Consensus 291 ~~~~g~~~~A~~l~~~~~~~~~~~~------~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~ 364 (851)
|+..|++.+++...++.++.|...- ...+..++.+|.+.++++.|+.+|.+.+.....|+
T Consensus 267 ~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------------- 332 (539)
T KOG0548|consen 267 YLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD-------------- 332 (539)
T ss_pred HHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH--------------
Confidence 9999999999988888777654211 11233345577778899999999999887655432
Q ss_pred HHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 038852 365 ECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVE 444 (851)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g 444 (851)
...+....+++++..+......+.. ..-...-+..+.+.|++..|++.|.++++.. +-|...|....-+|.+.|
T Consensus 333 ~ls~lk~~Ek~~k~~e~~a~~~pe~-----A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~ 406 (539)
T KOG0548|consen 333 LLSKLKEAEKALKEAERKAYINPEK-----AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLG 406 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhhChhH-----HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHh
Confidence 2234455566666555543322221 2222333667888999999999999999875 447889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038852 445 RIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCN 512 (851)
Q Consensus 445 ~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~ 512 (851)
.+..|++-.+..++.+.. ....|..-+.++....+|++|++.|.+.++.+ |+..-+..-+.-|..
T Consensus 407 ~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 407 EYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred hHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 999999999999988643 33333345667777889999999999998874 444444333443433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.8e-11 Score=131.76 Aligned_cols=296 Identities=15% Similarity=0.181 Sum_probs=136.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-
Q 038852 146 IAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA- 224 (851)
Q Consensus 146 i~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~- 224 (851)
...+...|++++|++.+++... .+......+...+..|.+.|++++|..+|..+++.+|. |...|..|..++.-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd--n~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD--NYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHhhhc
Confidence 3445566777777766665422 22222334455566666667777777777776666654 555555555554222
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHH
Q 038852 225 ----GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLE-KANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKE 299 (851)
Q Consensus 225 ----g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~-~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~ 299 (851)
.+.+...++|+++...-.. ......+.-.+....++. .+..++..++.+|+.
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP--------------------- 143 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP--------------------- 143 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---------------------
Confidence 2345555555555544322 222212221121111221 222333334444432
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCC-----CCccCH--HHHHHHHHHHHH
Q 038852 300 AMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNH----QPPN-----IQAVNS--DTFNIMVNECFK 368 (851)
Q Consensus 300 A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~----~~p~-----~~~~~~--~~~~~L~~~~~~ 368 (851)
.+|+.|-..|....+.+-..+++....... ..+. ...... .++..++..|..
T Consensus 144 -----------------slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 144 -----------------SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred -----------------hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 233333333333333333333333332210 0000 000011 233444555555
Q ss_pred cCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 038852 369 HGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDD 448 (851)
Q Consensus 369 ~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~ 448 (851)
.|++++|++++++++...+. .+..|..-++.|-+.|++++|.+.++........ |..+-+..+..+.+.|++++
T Consensus 207 ~g~~~~Al~~Id~aI~htPt-----~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~ 280 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPT-----LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEE 280 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHH
Confidence 66666666666655554433 4455555555566666666666666655554322 44444455555555666666
Q ss_pred HHHHHHHHHHcCCccch-------hHH-HHHHHHHHHcCCHHHHHHHHHHH
Q 038852 449 ALELFNRMVESGLRVVV-------SFG-TKVFNELITKGKVAECAPILTKM 491 (851)
Q Consensus 449 A~~~~~~m~~~~~~~~~-------~~~-~~L~~~~~~~g~~~~A~~ll~~m 491 (851)
|.+++....+.+..+.. .|| ...+.+|.+.|++..|++.|..+
T Consensus 281 A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 281 AEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66655555544432211 111 22344555555555555544443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.4e-10 Score=123.78 Aligned_cols=415 Identities=13% Similarity=0.012 Sum_probs=286.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYC 186 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~ 186 (851)
+..+.-++...|+++.+.+.|++.+..- ......|+.+...|...|.-..|+.++++.+....-..|...+......|.
T Consensus 326 ~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~ 404 (799)
T KOG4162|consen 326 FDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCI 404 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHH
Confidence 4456667788899999999999977543 335678999999999999999999999987665433344445544445454
Q ss_pred -HcCChHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038852 187 -DEGKVDEGMNVFRRIIETAPV---GPSSNTYRHLTKGFVDA-----------GRIGEAVDLLRDMLSRQLGADSLVYNN 251 (851)
Q Consensus 187 -~~g~~~~A~~l~~~~~~~~~~---~p~~~~~~~Li~~~~~~-----------g~~~~A~~l~~~m~~~g~~pd~~~~~~ 251 (851)
+.+.+++++++..+++...+. ......|..++-+|... ....+++..++++++.+.. |..+...
T Consensus 405 e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~ 483 (799)
T KOG4162|consen 405 ERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFY 483 (799)
T ss_pred hchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHH
Confidence 458888998888888763211 12344666666666532 2246788999999988766 5555556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Q 038852 252 LISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEK 331 (851)
Q Consensus 252 Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~ 331 (851)
+.--|+..++++.|++..++.++.+...+...|..|+.++...+++.+|+.+.+..++.-.. |-.....-+..-...++
T Consensus 484 lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~~i~~~~~~ 562 (799)
T KOG4162|consen 484 LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKIHIELTFND 562 (799)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhhhhhhhccc
Confidence 77788889999999999999999987879999999999999999999999999988765321 11111222333344567
Q ss_pred HHHHHHHHHHHHHcCC-----------------------CCCCCccCHHHHHHHHHHHHHcCC---hHHHHHHHHHhccC
Q 038852 332 KEEAQALFEQMLDNHQ-----------------------PPNIQAVNSDTFNIMVNECFKHGK---FSEAIETFKKAGTH 385 (851)
Q Consensus 332 ~~~A~~l~~~m~~~~~-----------------------~p~~~~~~~~~~~~L~~~~~~~g~---~~~A~~~~~~~~~~ 385 (851)
.++|+.....++..-. .+........++..+.......+. ++.. +.+....
T Consensus 563 ~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~ 639 (799)
T KOG4162|consen 563 REEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---LPSSTVL 639 (799)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---cCccccc
Confidence 7777666655543100 000000011122222221111100 0000 0000000
Q ss_pred C-CCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccc
Q 038852 386 P-KSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVV 464 (851)
Q Consensus 386 ~-~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~ 464 (851)
. +..........|......+.+.+..++|...+.+..+. ..-....|...+..+...|..++|.+.|..++..++...
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 0 00000111345677788888999999999888888765 233567888888999999999999999999999875444
Q ss_pred hhHHHHHHHHHHHcCCHHHHHH--HHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038852 465 VSFGTKVFNELITKGKVAECAP--ILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG 530 (851)
Q Consensus 465 ~~~~~~L~~~~~~~g~~~~A~~--ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g 530 (851)
...+.+..++.+.|+..-|.. ++..+.+.+.. +...|-.+...+...|+.+.|.+.|.......
T Consensus 719 -~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 719 -PSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred -HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 444569999999999888887 99999998766 88999999999999999999999999987643
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-11 Score=125.06 Aligned_cols=197 Identities=13% Similarity=0.129 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTK 219 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~ 219 (851)
..+..++..+...|++++|++.|+++++... .+...+..++.+|...|++++|++.|+++++..+. +...+..++.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~ 107 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDP--DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN--NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHH
Confidence 3444455555555555555555555544321 23444555555555555555555555555554433 3445555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHH
Q 038852 220 GFVDAGRIGEAVDLLRDMLSRQL-GADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDK 298 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~g~-~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 298 (851)
++...|++++|+++|+++++... ..+...+..++.++...|++++|.+.|+++++.... +...+..++.++...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 55555555555555555554321 112234444555555555555555555555443322 2333444444444444444
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038852 299 EAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQM 342 (851)
Q Consensus 299 ~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m 342 (851)
+|+++++++++.. ..+...+..++..+...|+.++|..+++.+
T Consensus 187 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444444444431 122333333444444444444444444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.4e-12 Score=140.01 Aligned_cols=211 Identities=20% Similarity=0.161 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-ccch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------C
Q 038852 247 LVYNNLISGFLNLGNLEKANELFDELKQR-----CL-VYDG-VVNATFMEWWFNQGKDKEAMQSYKSLMERN-------F 312 (851)
Q Consensus 247 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~d~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-------~ 312 (851)
.+...|...|...|++++|+.+++..++. |. .+.. ...+.+...|...+++++|+.+|++++..- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555777777777777777777766653 10 1122 222345666777788888887777776531 1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCC
Q 038852 313 RMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQP--PNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKP 390 (851)
Q Consensus 313 ~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~--p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 390 (851)
..-..+++.|..+|.+.|++++|..+++++++.-.. -.....-...++.++..|+..+++++|..++.++.+......
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 112356777778888888888888888777652100 000000122445566666667777777666665432211100
Q ss_pred Cc---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 391 FA---MDVAGYNNIIARYCENEMLEEAEKLLREISTKS----L--SP-DVTTFRTLIDAYLKVERIDDALELFNRMV 457 (851)
Q Consensus 391 ~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~--~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~ 457 (851)
-. .-..+++.|...|...|++++|+++|++++... . .. ....++.|...|.+.+++++|.++|.+.+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 00 012345555555555555555555555543320 0 00 12234444455555555555555544443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.4e-11 Score=133.12 Aligned_cols=428 Identities=12% Similarity=0.056 Sum_probs=274.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 038852 119 DLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVF 198 (851)
Q Consensus 119 ~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~ 198 (851)
+...|+..|-++++.... -...|..|+..|...-+...|.+.|+++++.+. .|...+..+.+.|++..++++|..+.
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa--tdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA--TDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhhhhHHHHHHHhhccccHHHHHHHH
Confidence 466677777666644322 246788899999888899999999999977543 46778899999999999999999996
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 038852 199 RRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLV 278 (851)
Q Consensus 199 ~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~ 278 (851)
-..-+..+...-...|..+.-.|.+.+++..|+.-|+.+++..++ |...|..|+.+|.+.|.+..|.++|.++...++.
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 655554443333445666777888899999999999999999887 9999999999999999999999999998876554
Q ss_pred cchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------c
Q 038852 279 YDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF------RMTPATCNTLLEVLLKHEKKEEAQALFEQMLD-------N 345 (851)
Q Consensus 279 ~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~------~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~-------~ 345 (851)
+.........+.+..|++++|+..+..++...- .--..++..+...+.-.|-..+|.++|++.++ .
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 344444455567889999999999988765321 11123333344444444444444444444332 2
Q ss_pred CCCCCCCccCHHHHHHHHHHHHHcCChH------HHHHH----HHHhccCCCC-------------CCCccCHHHHHHHH
Q 038852 346 HQPPNIQAVNSDTFNIMVNECFKHGKFS------EAIET----FKKAGTHPKS-------------KPFAMDVAGYNNII 402 (851)
Q Consensus 346 ~~~p~~~~~~~~~~~~L~~~~~~~g~~~------~A~~~----~~~~~~~~~~-------------~~~~~d~~~~~~li 402 (851)
.... +...|..+..+|.-.-..+ ..+.+ ++.+...... ..+..+...|..|+
T Consensus 708 ~~~~-----~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLG 782 (1238)
T KOG1127|consen 708 SLQS-----DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLG 782 (1238)
T ss_pred hhhh-----hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHh
Confidence 2111 2333333333321110000 00000 1111111000 00111345566666
Q ss_pred HHHHh--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHH
Q 038852 403 ARYCE--------NEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNE 474 (851)
Q Consensus 403 ~~~~~--------~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~ 474 (851)
..|.+ ..+...|+..+.+.++.. ..+..+|+.|+.. ...|++.-|...|-+.+-........|.| +...
T Consensus 783 inylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~N-lgvL 859 (1238)
T KOG1127|consen 783 INYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLN-LGVL 859 (1238)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheec-ccee
Confidence 65554 123346788888777653 2367788887766 66688888888888887776666666666 6677
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCC
Q 038852 475 LITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMM----KYGVGITPALQDFVRETFGKAGR 550 (851)
Q Consensus 475 ~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~----~~g~~~~~~~~~~L~~~~~~~G~ 550 (851)
+.+..+++-|...|.+.....+. |...|..........|+.-++..+|..-. ..|-.+....+.+........|+
T Consensus 860 ~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~ 938 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGN 938 (1238)
T ss_pred EEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccc
Confidence 78888999999998888776543 55666666666666777777777776522 22333444444555555566666
Q ss_pred HHHHHHHHHh
Q 038852 551 GEEIERVLNA 560 (851)
Q Consensus 551 ~~eA~~ll~~ 560 (851)
.++-+...++
T Consensus 939 ~e~~I~t~~k 948 (1238)
T KOG1127|consen 939 IEESINTARK 948 (1238)
T ss_pred hHHHHHHhhh
Confidence 6555544444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.8e-11 Score=124.22 Aligned_cols=201 Identities=15% Similarity=0.080 Sum_probs=170.4
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
..+..+...+...|++++|+..+++++... ..+...+..++..+...|++++|++.|+++++... .+...+..++.+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~ 108 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP--NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHH
Confidence 346678899999999999999999998764 34577888899999999999999999999987543 356778889999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEK 264 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~ 264 (851)
+...|++++|++.|+++++..........+..++.++...|++++|.+.|+++++.... +...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999875433335567888999999999999999999999987654 67788899999999999999
Q ss_pred HHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038852 265 ANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMER 310 (851)
Q Consensus 265 A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 310 (851)
|.++++++++.. ..+...+..++..+...|+.++|..+++.+...
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999998873 335667778888899999999999988877654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-11 Score=136.08 Aligned_cols=248 Identities=23% Similarity=0.225 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCc
Q 038852 211 SNTYRHLTKGFVDAGRIGEAVDLLRDMLSR-----QL-GADS-LVYNNLISGFLNLGNLEKANELFDELKQR-----CLV 278 (851)
Q Consensus 211 ~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~-----g~-~pd~-~~~~~Li~~~~~~g~~~~A~~~~~~~~~~-----~~~ 278 (851)
..+...|...|...|++++|+.+++.+++. |. .++. ...+.++..|...+++++|..+|++++.. |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356677999999999999999999998875 21 1233 23445788999999999999999998753 211
Q ss_pred --cchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-C
Q 038852 279 --YDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR------M-TPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQ-P 348 (851)
Q Consensus 279 --~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~------~-~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~-~ 348 (851)
.-..+++.|..+|++.|++++|..+++++++.--+ + -...++.++..|...+++++|+.++.+.++.-. .
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12567778888999999999999999887753211 1 113466788889999999999999998775311 0
Q ss_pred CCCCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCc---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 038852 349 PNIQA-VNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFA---MDVAGYNNIIARYCENEMLEEAEKLLREIST- 423 (851)
Q Consensus 349 p~~~~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~- 423 (851)
+.... .-..++..|+..|...|++++|.++|++++......... -....++.|...|.+.+++++|..+|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 11110 135689999999999999999999999986543222211 1245678899999999999999999887543
Q ss_pred ---CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 424 ---KSL-SPD-VTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 424 ---~g~-~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
.|. .|+ ..+|..|+..|...|++++|+++.+.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 222 123 46788899999999999999998888764
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-10 Score=129.38 Aligned_cols=309 Identities=17% Similarity=0.180 Sum_probs=184.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 038852 109 NRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDE 188 (851)
Q Consensus 109 ~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~ 188 (851)
-.+..+...|++++|++.++.... .+..........+..+.+.|++++|..+|..+++.+. .|...|..|..++...
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP--dn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP--DNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHhhh
Confidence 345677889999999999987443 3344456677888889999999999999999998643 3445555566555222
Q ss_pred -----CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 038852 189 -----GKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIG-EAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNL 262 (851)
Q Consensus 189 -----g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~-~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~ 262 (851)
.+.+...++|+++....+ ...+...+.-.+.....|. .+..++..++.+|+. .+|+.|-..|......
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~yp---~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKYP---RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKA 159 (517)
T ss_pred cccccccHHHHHHHHHHHHHhCc---cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHH
Confidence 356788899998877653 3333333433333333443 455667778888765 4677777777655554
Q ss_pred HHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHhCCCHHHHHHHHH
Q 038852 263 EKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTP--ATCNTLLEVLLKHEKKEEAQALFE 340 (851)
Q Consensus 263 ~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~--~~~~~Li~~~~~~g~~~~A~~l~~ 340 (851)
+-...++..+...--. .+.+.... ....-.++. .++..+...|...|++++|+++++
T Consensus 160 ~~i~~l~~~~~~~l~~---------------~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id 218 (517)
T PF12569_consen 160 AIIESLVEEYVNSLES---------------NGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYID 218 (517)
T ss_pred HHHHHHHHHHHHhhcc---------------cCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4445555544332100 00000000 000011222 233445566666677777777777
Q ss_pred HHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038852 341 QMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLRE 420 (851)
Q Consensus 341 ~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 420 (851)
++++. .|. ..+.|...+.+|.+.|++++|.+.++.+...+.. |...-+..+..+.+.|++++|.+++..
T Consensus 219 ~aI~h--tPt----~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-----DRyiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 219 KAIEH--TPT----LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-----DRYINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred HHHhc--CCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-----hHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 76663 232 4566667777777777777777777766655444 555556666666677777777777666
Q ss_pred HHhCCCCCCHH------HH--HHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 421 ISTKSLSPDVT------TF--RTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 421 m~~~g~~pd~~------~~--~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
..+.+..+... .| ...+.+|.+.|++..|++.|..+.+
T Consensus 288 Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 288 FTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 65544322111 22 3345666777777777766666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-09 Score=109.06 Aligned_cols=316 Identities=14% Similarity=0.173 Sum_probs=182.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHH-HHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVS-YNNLINTY 185 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~-~~~Li~~~ 185 (851)
...+...++.+|.+..|+.-|..++..+ ..+-.++..-...|...|+-..|+.-|++.++ .+||... -.--..++
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhh
Confidence 3456667777777777777777766432 11222333344556667777777777776655 3455332 22234456
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCC-CHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGP-SSNT------------YRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNL 252 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p-~~~~------------~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L 252 (851)
.+.|.+++|..-|+.++..++..- +..+ ....+..+...|+...|++.+..+++..+- |...|..-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHH
Confidence 677777777777777776654210 1111 112233444556666666666666665444 66666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCH
Q 038852 253 ISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKK 332 (851)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~ 332 (851)
..+|...|+..+|+.-++.+.+.... +...+..+...+...|+.+.++...++.++.++.. ..+. ...+.+
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH--K~Cf------~~YKkl 266 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH--KLCF------PFYKKL 266 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch--hhHH------HHHHHH
Confidence 66666666666666666555544333 44555555566666666666666666666554321 1110 011111
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCC-CCCccCHHHHHHHHHHHHhcCCH
Q 038852 333 EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKS-KPFAMDVAGYNNIIARYCENEML 411 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~d~~~~~~li~~~~~~g~~ 411 (851)
.+..+.++.|. .....++|.++++..+++.+..+. ..+ ....+..+-.++...+.+
T Consensus 267 kKv~K~les~e---------------------~~ie~~~~t~cle~ge~vlk~ep~~~~i--r~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 267 KKVVKSLESAE---------------------QAIEEKHWTECLEAGEKVLKNEPEETMI--RYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHHHHHHH---------------------HHHhhhhHHHHHHHHHHHHhcCCcccce--eeeeeheeeecccccCCH
Confidence 22222222221 223556677777777776554333 111 223345566667778888
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 038852 412 EEAEKLLREISTKSLSP-DVTTFRTLIDAYLKVERIDDALELFNRMVESGL 461 (851)
Q Consensus 412 ~~A~~l~~~m~~~g~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~ 461 (851)
.+|+....++++. .| |+.++.--..+|.....+++|+.-|+++.+.+.
T Consensus 324 ~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 324 GEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 8888888888864 34 477888888888888889999998888888763
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-09 Score=110.62 Aligned_cols=301 Identities=13% Similarity=0.124 Sum_probs=165.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhc
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSL-VYNNLISGFLNL 259 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-~~~~Li~~~~~~ 259 (851)
|...+...|.+.+|+.-|..+++.++. +-.++...+..|...|+...|+.-|.++++. +||-. .-.--+..+.+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~--~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPN--NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCch--hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhc
Confidence 333444444444444444444443322 2223333334444444444444444444443 22221 111223334444
Q ss_pred CCHHHHHHHHHHHHhcCCcc--------------chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 038852 260 GNLEKANELFDELKQRCLVY--------------DGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEV 325 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~~~~--------------d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~ 325 (851)
|.++.|+.-|+.++..+..- ........+..+...|+...|++.+..+++..+ .|...+..-..+
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc 198 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKC 198 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHH
Confidence 44444444444444432210 011122233446667888888888888887754 466677777888
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHH----
Q 038852 326 LLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNI---- 401 (851)
Q Consensus 326 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~l---- 401 (851)
|...|+...|+.-++.+-+.. -| +.+++..+...+...|+.+.++..++++++.+++... -...|..|
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs--~D----nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~--Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLS--QD----NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL--CFPFYKKLKKVV 270 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcc--cc----chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh--HHHHHHHHHHHH
Confidence 888888888888877776532 22 6778888888888888888888888888776554220 11122111
Q ss_pred -----HHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHH
Q 038852 402 -----IARYCENEMLEEAEKLLREISTKSLSPDV---TTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFN 473 (851)
Q Consensus 402 -----i~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~ 473 (851)
+....+.++|.++++..+.+++....... ..+..+-.+|...+++.+|+....++++.+. .++.++..-..
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~-~dv~~l~dRAe 349 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP-DDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc-hHHHHHHHHHH
Confidence 11233455666666666666554222111 2334455566667777777777777776542 23444444566
Q ss_pred HHHHcCCHHHHHHHHHHHhhCC
Q 038852 474 ELITKGKVAECAPILTKMGEKD 495 (851)
Q Consensus 474 ~~~~~g~~~~A~~ll~~m~~~~ 495 (851)
+|.....||+|+.-|+++.+.+
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcC
Confidence 7777777777777777776653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-10 Score=128.56 Aligned_cols=444 Identities=10% Similarity=-0.012 Sum_probs=279.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYC 186 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~ 186 (851)
+..+...|+...|...|...|+++...+ .-|...+..+.+.|++..++++|..+.-..-++.....-...|..+.-.|.
T Consensus 495 f~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 495 FAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 3445555555567778888888887554 447788999999999999999999985544332222222334555667788
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038852 187 DEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKAN 266 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~ 266 (851)
+.+++..|+.-|..+++.+|. |...|..|+.+|.+.|++..|+++|+++....+. +...-.-....-+..|.+++|+
T Consensus 574 ea~n~h~aV~~fQsALR~dPk--D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDPK--DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred CccchhhHHHHHHHHhcCCch--hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHHHH
Confidence 899999999999999998876 8889999999999999999999999999887544 3333334555667889999999
Q ss_pred HHHHHHHhcC------CccchhhHHHHHHHHHHcCCHHHHHHHHHHHH-------HhcCCCCHHHHHHHHHHHHhCCCHH
Q 038852 267 ELFDELKQRC------LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLM-------ERNFRMTPATCNTLLEVLLKHEKKE 333 (851)
Q Consensus 267 ~~~~~~~~~~------~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~-------~~~~~~~~~~~~~Li~~~~~~g~~~ 333 (851)
..+..++... ...-..++..+...+...|-..+|.+++++.+ ....-.+...|..+..+|.-.-..+
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 9998876532 11123334444444444554455555554433 2222223334443333322110000
Q ss_pred ------HHHHHHHH-HHHcCCCCCCC---------------ccCHHHHHHHHHHHHH--------cCChHHHHHHHHHhc
Q 038852 334 ------EAQALFEQ-MLDNHQPPNIQ---------------AVNSDTFNIMVNECFK--------HGKFSEAIETFKKAG 383 (851)
Q Consensus 334 ------~A~~l~~~-m~~~~~~p~~~---------------~~~~~~~~~L~~~~~~--------~g~~~~A~~~~~~~~ 383 (851)
..+.+|.. ....+..++.. ..+...|..|+..|.+ ..+...|+.++++..
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV 810 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV 810 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 01111111 11111111100 0134566667666655 223457888898887
Q ss_pred cCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Q 038852 384 THPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRV 463 (851)
Q Consensus 384 ~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~ 463 (851)
..... +...|+.|.-+ ...|.+.-|.-.|-+.+.. .+-+..+|..++..|.+..+++-|...|.+....++..
T Consensus 811 ~L~an-----n~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~n 883 (1238)
T KOG1127|consen 811 SLCAN-----NEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLN 883 (1238)
T ss_pred HHhhc-----cHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcCchh
Confidence 66444 67788877765 6667888777777666543 23367789999999999999999999999999887766
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHhh----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---------cC
Q 038852 464 VVSFGTKVFNELITKGKVAECAPILTKMGE----KDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMK---------YG 530 (851)
Q Consensus 464 ~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~----~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~---------~g 530 (851)
...|.. ...+....|+.-+++.+|..-.+ .|-.++..-|.+.......+|++++-+...+++-. .+
T Consensus 884 l~~WlG-~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~ 962 (1238)
T KOG1127|consen 884 LVQWLG-EALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLG 962 (1238)
T ss_pred hHHHHH-HHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhc
Confidence 666643 33445567888888888876221 23334444444444455566666665554444332 13
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 038852 531 VGITPALQDFVRETFGKAGRGEEIERVLNADR 562 (851)
Q Consensus 531 ~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~ 562 (851)
.......|.+.+..+.+.+.+++|.++..++.
T Consensus 963 ~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 963 HPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33344555566666677777777776666554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-09 Score=120.51 Aligned_cols=377 Identities=15% Similarity=0.143 Sum_probs=212.5
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC--------CCCHHHHHHHHHHHHH
Q 038852 116 RAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADI--------VPNIVSYNNLINTYCD 187 (851)
Q Consensus 116 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~--------~pd~~~~~~Li~~~~~ 187 (851)
..|+.|.|.+-.+-+. +..+|..+..+|.+..++|-|.-.+-.|-...|. .++ .+-...+.....
T Consensus 740 tiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred EeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 4566666665554432 3467888888888888888777776665322111 111 111222333457
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038852 188 EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANE 267 (851)
Q Consensus 188 ~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~ 267 (851)
.|.+++|+.+|++..+ |..|-+.|-..|.+++|+++-+.--+..++ .||...+.-+...+|.+.|++
T Consensus 813 LgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHH
Confidence 7888888888888754 334555677788888888876644333222 466677777777888888888
Q ss_pred HHHHHH----------hcCC---------ccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 038852 268 LFDELK----------QRCL---------VYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLK 328 (851)
Q Consensus 268 ~~~~~~----------~~~~---------~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~ 328 (851)
.|++.- ..++ ..|...|.-....+...|+.+.|+.+|..+. -|..+++..|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEee
Confidence 887632 1111 1244455555555556677777777777654 34456777777
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhc
Q 038852 329 HEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCEN 408 (851)
Q Consensus 329 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~ 408 (851)
.|+.++|..+-++-- |..+...|++.|...|++.+|+.+|.++.. +.+.|+.|-.+
T Consensus 951 qGk~~kAa~iA~esg-----------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-------------fsnAIRlcKEn 1006 (1416)
T KOG3617|consen 951 QGKTDKAARIAEESG-----------DKAACYHLARMYENDGDVVKAVKFFTRAQA-------------FSNAIRLCKEN 1006 (1416)
T ss_pred ccCchHHHHHHHhcc-----------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------------HHHHHHHHHhc
Confidence 777777777665432 456777788888888888888888876632 44444444333
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHH-----------HHHHHHHHHHHcCCHHHHHHHHHH--------HH--HcCCccchhH
Q 038852 409 EMLEEAEKLLREISTKSLSPDVT-----------TFRTLIDAYLKVERIDDALELFNR--------MV--ESGLRVVVSF 467 (851)
Q Consensus 409 g~~~~A~~l~~~m~~~g~~pd~~-----------~~~~Ll~~~~~~g~~~~A~~~~~~--------m~--~~~~~~~~~~ 467 (851)
+ +++-+.-+..|. +-. |.. -+...+..|.+.|.+.+|+++-=+ ++ +.+...+..+
T Consensus 1007 d-~~d~L~nlal~s--~~~-d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1007 D-MKDRLANLALMS--GGS-DLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred C-HHHHHHHHHhhc--Cch-hHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 2 222111111111 000 100 012233456666666666654111 11 2233345566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCC----HHHHHHHH
Q 038852 468 GTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMM-KYGVGIT----PALQDFVR 542 (851)
Q Consensus 468 ~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~-~~g~~~~----~~~~~~L~ 542 (851)
.+...+.++...+|++|..++-..++ |...+..| ...++.-..++-+.|. .++-.++ ..+...++
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqva 1152 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVA 1152 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHH
Confidence 66666667777777777777766553 22233333 3333333334444442 1211122 22334478
Q ss_pred HHHHhcCCHHHHHHHHH
Q 038852 543 ETFGKAGRGEEIERVLN 559 (851)
Q Consensus 543 ~~~~~~G~~~eA~~ll~ 559 (851)
+++.+.|.+..|.+-|.
T Consensus 1153 e~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1153 ELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred HHHHhccchHHHHHHHh
Confidence 88888888777766554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-10 Score=122.70 Aligned_cols=223 Identities=17% Similarity=0.103 Sum_probs=113.8
Q ss_pred CChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038852 153 KRYDDAVALFKYFFDQADIVPN--IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEA 230 (851)
Q Consensus 153 g~~~~A~~l~~~~~~~~~~~pd--~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A 230 (851)
+..+.++..|.+++......++ ...|..++.+|...|++++|+..|+++++.++. +..+|+.++..+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD--MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHCCCHHHH
Confidence 3445555555555543333222 234555666666666666666666666665544 555666666666666666666
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038852 231 VDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMER 310 (851)
Q Consensus 231 ~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 310 (851)
++.|+++++.... +..+|..++.++...|++++|++.|++.++.+.. +. ........+...++.++|++.|++....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 6666666665444 4555666666666666666666666666655433 21 1111122233445566666666554432
Q ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccC
Q 038852 311 NFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNH-QPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTH 385 (851)
Q Consensus 311 ~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 385 (851)
.. ++ .|. ........|+..++ +.++.+.+.. ..+........+|..++..+.+.|++++|+..|+++...
T Consensus 195 ~~-~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 195 LD-KE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred CC-cc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 21 11 121 11222223443332 2333333210 000000013346677777777777777777777776554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-08 Score=108.53 Aligned_cols=401 Identities=15% Similarity=0.150 Sum_probs=232.6
Q ss_pred CCCccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 038852 102 GPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNL 181 (851)
Q Consensus 102 ~~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~L 181 (851)
++..+++.-+.+++..++|++|+.+.+.-.. ...+.+.+..-+.+.++.++.|+|++.++.+ +. -|..+...-
T Consensus 44 dd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~-~~----~~~~ll~L~ 116 (652)
T KOG2376|consen 44 DDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKLDEALKTLKGL-DR----LDDKLLELR 116 (652)
T ss_pred CcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccHHHHHHHHhcc-cc----cchHHHHHH
Confidence 3446778889999999999999966654221 0111111122334456899999999999843 21 244467777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038852 182 INTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGN 261 (851)
Q Consensus 182 i~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~ 261 (851)
+..+.+.|+|++|+++|+.+.+.+-..-+...-..|+.+-. .-.+ .+++..-+. ..-+-..+.+....++..|+
T Consensus 117 AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~-~~~q~v~~v-~e~syel~yN~Ac~~i~~gk 190 (652)
T KOG2376|consen 117 AQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQV-QLLQSVPEV-PEDSYELLYNTACILIENGK 190 (652)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhH-HHHHhccCC-CcchHHHHHHHHHHHHhccc
Confidence 88899999999999999999776433222222222221111 1111 112221111 12133444456667778888
Q ss_pred HHHHHHHHHHHHhcCCc-------cc-------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCH---HHHHHHHH
Q 038852 262 LEKANELFDELKQRCLV-------YD-------GVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTP---ATCNTLLE 324 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~~-------~d-------~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~---~~~~~Li~ 324 (851)
+..|+++++..++.+.. -+ ..+..-+..++...|+.++|..+|..++..+..... +.-|.|+.
T Consensus 191 y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva 270 (652)
T KOG2376|consen 191 YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVA 270 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhh
Confidence 88888888877332110 01 112334455677788888888888888876653321 11222221
Q ss_pred HHHhCCCHH----------------HHH------------------HHH----HHHHH--cCCCCCCCccCHHHHHHHHH
Q 038852 325 VLLKHEKKE----------------EAQ------------------ALF----EQMLD--NHQPPNIQAVNSDTFNIMVN 364 (851)
Q Consensus 325 ~~~~~g~~~----------------~A~------------------~l~----~~m~~--~~~~p~~~~~~~~~~~~L~~ 364 (851)
+-....-++ .++ .+| +.+.+ ....+.. -...+-.++.
T Consensus 271 ~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~---p~~~~~~ll~ 347 (652)
T KOG2376|consen 271 LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMS---PESLFPILLQ 347 (652)
T ss_pred hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccC---chHHHHHHHH
Confidence 110000000 000 000 00000 0011110 1223333333
Q ss_pred HH--HHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHH
Q 038852 365 EC--FKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLR--------EISTKSLSPDVTTFR 434 (851)
Q Consensus 365 ~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~--------~m~~~g~~pd~~~~~ 434 (851)
.+ ++.....++.+++....+..+.. ...+...++......|+++.|++++. .+.+.+.. ..+..
T Consensus 348 ~~t~~~~~~~~ka~e~L~~~~~~~p~~----s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~ 421 (652)
T KOG2376|consen 348 EATKVREKKHKKAIELLLQFADGHPEK----SKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVG 421 (652)
T ss_pred HHHHHHHHHHhhhHHHHHHHhccCCch----hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHH
Confidence 22 22235777888887775544432 35566677788888999999999999 44444333 34556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc------CCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 038852 435 TLIDAYLKVERIDDALELFNRMVES------GLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVR 508 (851)
Q Consensus 435 ~Ll~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~ 508 (851)
.+...|.+.++.+.|..++++++.. +-..-...+..++..-.+.|+.++|..+++++.+.. ..|..+...++.
T Consensus 422 aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~ 500 (652)
T KOG2376|consen 422 AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVT 500 (652)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHH
Confidence 7788889999999999999999863 111112222334444457899999999999999864 348889999999
Q ss_pred HHHhcCChHHHHHHHHHH
Q 038852 509 GLCNEGLFDMSKDIVDQM 526 (851)
Q Consensus 509 a~~~~g~~~~A~~~~~~m 526 (851)
+|++. +.+.|..+-..+
T Consensus 501 a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 501 AYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhc-CHHHHHHHhhcC
Confidence 99875 466776665554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-10 Score=120.56 Aligned_cols=213 Identities=14% Similarity=0.009 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHH
Q 038852 317 ATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVA 396 (851)
Q Consensus 317 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~ 396 (851)
..|..++.+|...|++++|+..|+++++. .|+ +..+|+.++..|...|++++|++.|+++.+..+. +..
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-----~~~ 133 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALAL--RPD----MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-----YNY 133 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHH
Confidence 34555666666666666666666666653 232 5566666666666666666666666666655444 455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Q 038852 397 GYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELI 476 (851)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~ 476 (851)
+|..++.++...|++++|++.|++.++.. |+..........+...++.++|+..|++........ .+.. ...+.
T Consensus 134 a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~~--~~~~~ 207 (296)
T PRK11189 134 AYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKE--QWGW--NIVEF 207 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcc--ccHH--HHHHH
Confidence 56666666666666666666666666542 222111111112234456666666665544332111 1111 12222
Q ss_pred HcCCHHHHHHHHHHHhh---CCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 038852 477 TKGKVAECAPILTKMGE---KDPK---PDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGK 547 (851)
Q Consensus 477 ~~g~~~~A~~ll~~m~~---~~~~---pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~ 547 (851)
..|+++++ +.++.+.+ ..+. .....|..+...+.+.|++++|+..|+++++.+.....+....+++....
T Consensus 208 ~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 208 YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 33444332 23333321 1111 12346777777888888888888888888876543333333344444433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.5e-11 Score=127.90 Aligned_cols=257 Identities=16% Similarity=0.126 Sum_probs=188.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG 260 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g 260 (851)
.+.-+.+.|++.+|.-+|+.+++.+|. +..+|..|+......++-..|+..|+++++.... +..+...|+..|...|
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~--haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQ--HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChH--HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhh
Confidence 344467888888888888888888777 7888888888888888888888888888888766 7788888888888888
Q ss_pred CHHHHHHHHHHHHhcCCcc--------chhhHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhCCC
Q 038852 261 NLEKANELFDELKQRCLVY--------DGVVNATFMEWWFNQGKDKEAMQSYKSLMER-NFRMTPATCNTLLEVLLKHEK 331 (851)
Q Consensus 261 ~~~~A~~~~~~~~~~~~~~--------d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-~~~~~~~~~~~Li~~~~~~g~ 331 (851)
.-..|.++|++.++..+.. +...-.. ..+.....+....++|-++... +.+.|..+...|+..|...|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 8888888888776543221 0000000 1122233444555666665544 334777888888888888899
Q ss_pred HHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCH
Q 038852 332 KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEML 411 (851)
Q Consensus 332 ~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~ 411 (851)
+++|+++|+.++. ++|+ |..+|+.|+..+....+.++|+..|.+++...+. -+.++..|+-+|...|.+
T Consensus 446 fdraiDcf~~AL~--v~Pn----d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-----yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 446 FDRAVDCFEAALQ--VKPN----DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-----YVRVRYNLGISCMNLGAY 514 (579)
T ss_pred HHHHHHHHHHHHh--cCCc----hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-----eeeeehhhhhhhhhhhhH
Confidence 9999999998887 4565 8888999999998888999999999988877665 566677788888889999
Q ss_pred HHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038852 412 EEAEKLLREISTKS---------LSPDVTTFRTLIDAYLKVERIDDALELF 453 (851)
Q Consensus 412 ~~A~~l~~~m~~~g---------~~pd~~~~~~Ll~~~~~~g~~~~A~~~~ 453 (851)
++|.+.|-+++... ...+..+|.+|=.++...++.|.+..+.
T Consensus 515 kEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 515 KEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 99888887765421 1123457777777777777777555544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.6e-09 Score=116.08 Aligned_cols=308 Identities=12% Similarity=0.005 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNI-VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~-~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
...|..+...+...|+.+++.+.+.+..+......+. .........+...|++++|.++++++++..|. |...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR--DLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHH-
Confidence 3445555555666677777777776665543333332 22233344556778888888888888777655 4444442
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH
Q 038852 218 TKGFVD----AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN 293 (851)
Q Consensus 218 i~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~ 293 (851)
...+.. .+..+.+.+.++..... ...+...+..++.++...|++++|++.++++++.... +...+..+..+|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH
Confidence 223333 33444444444431111 1113345556667777888888888888888776654 56667777778888
Q ss_pred cCCHHHHHHHHHHHHHhcCC-CC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHH-H--HHHHHHH
Q 038852 294 QGKDKEAMQSYKSLMERNFR-MT--PATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTF-N--IMVNECF 367 (851)
Q Consensus 294 ~g~~~~A~~l~~~~~~~~~~-~~--~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~-~--~L~~~~~ 367 (851)
.|++++|+.++++.++.... ++ ...|..+...+...|++++|+.+|++++....... ..... . .++..+.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~ 236 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESD----PALDLLDAASLLWRLE 236 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCC----hHHHHhhHHHHHHHHH
Confidence 88888888888877765432 11 23455677888888888888888888764322111 11111 1 2233333
Q ss_pred HcCChHHHHHH--H-HHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---C-----CHHHHHHH
Q 038852 368 KHGKFSEAIET--F-KKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLS---P-----DVTTFRTL 436 (851)
Q Consensus 368 ~~g~~~~A~~~--~-~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p-----d~~~~~~L 436 (851)
..|..+.+.++ + ......... . .........+.++...|+.++|..+++.+...... - ........
T Consensus 237 ~~g~~~~~~~w~~~~~~~~~~~~~-~--~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~ 313 (355)
T cd05804 237 LAGHVDVGDRWEDLADYAAWHFPD-H--GLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAE 313 (355)
T ss_pred hcCCCChHHHHHHHHHHHHhhcCc-c--cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHH
Confidence 44433333332 1 111111010 1 01222234566667778888888888776553211 0 11122233
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 038852 437 IDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 437 l~~~~~~g~~~~A~~~~~~m~~ 458 (851)
..++...|++++|++.+..++.
T Consensus 314 A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 314 ALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3345566777777776666654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-09 Score=106.68 Aligned_cols=416 Identities=13% Similarity=0.094 Sum_probs=206.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHH-HHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYN-NLINTY 185 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~-~Li~~~ 185 (851)
+...+..+++..++++|++++..-.... ..+......|..+|+...++..|.+.|+.+-.. .|...-|. .-...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHH
Confidence 4455566666666666666655444332 224555556666666666666666666665321 12222221 123344
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSS--NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLE 263 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~--~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~ 263 (851)
.+.+.+.+|+++...|... ++. .+...-.......+++..+..+++..-..| +..+.+..+....+.|+++
T Consensus 89 Y~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 5556666666666555321 111 111111222233455555555555444221 3444555555555666666
Q ss_pred HHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHhCCCHHHHHHHH
Q 038852 264 KANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATC----NTLLEVLLKHEKKEEAQALF 339 (851)
Q Consensus 264 ~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~----~~Li~~~~~~g~~~~A~~l~ 339 (851)
.|.+-|..+.+-+-- ...+...+..+..+.|+++.|+++..+++++|++..+..- ...++ .+.+..-+.+.
T Consensus 162 aAvqkFqaAlqvsGy-qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD----vrsvgNt~~lh 236 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGY-QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID----VRSVGNTLVLH 236 (459)
T ss_pred HHHHHHHHHHhhcCC-CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc----hhcccchHHHH
Confidence 666666665554322 2222223333445556666666666666665543322110 00000 00000111111
Q ss_pred HHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 340 EQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLR 419 (851)
Q Consensus 340 ~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 419 (851)
... -...++.-...+.+.|+++.|.+.+..|.- ......|.++...+...-. .+++-+..+-+.
T Consensus 237 ~Sa------------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPP---RaE~elDPvTLHN~Al~n~-~~~p~~g~~KLq 300 (459)
T KOG4340|consen 237 QSA------------LVEAFNLKAAIEYQLRNYEAAQEALTDMPP---RAEEELDPVTLHNQALMNM-DARPTEGFEKLQ 300 (459)
T ss_pred HHH------------HHHHhhhhhhhhhhcccHHHHHHHhhcCCC---cccccCCchhhhHHHHhcc-cCCccccHHHHH
Confidence 111 123566667778899999999998887743 3333447888777654322 445555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-chhHHHHHHHHHHHc-CCHHHHHHHHHHHhhCCCC
Q 038852 420 EISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRV-VVSFGTKVFNELITK-GKVAECAPILTKMGEKDPK 497 (851)
Q Consensus 420 ~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~L~~~~~~~-g~~~~A~~ll~~m~~~~~~ 497 (851)
-++..+. --..||..|+-.||+..-++.|..++.+-.....+- +...|+ |+++++.+ -..++|.+-++.+...-.
T Consensus 301 FLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~- 377 (459)
T KOG4340|consen 301 FLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLT- 377 (459)
T ss_pred HHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHH-
Confidence 5555432 246788889999999999999988876644332222 223333 55666544 345666555544432100
Q ss_pred CCHHHHHHHHHHH-HhcCC----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038852 498 PDFLIYDVVVRGL-CNEGL----FDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 498 pd~~~~~~ll~a~-~~~g~----~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~ 563 (851)
...-...+..- .+..+ ..++++-|++.++. -..+...-++.|++..++..++++|+.-.+
T Consensus 378 --~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 378 --EKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred --HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 00000011110 11111 11222222222221 112233356678889999999999987543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.3e-11 Score=127.10 Aligned_cols=257 Identities=11% Similarity=0.034 Sum_probs=204.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCC
Q 038852 217 LTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGK 296 (851)
Q Consensus 217 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~ 296 (851)
.+..+.+.|++.+|.-+|+.+++.++. +...|..|+..-...++-..|+..+++.++.+.. +..+...|...|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhh
Confidence 455677899999999999999999877 8899999999999999999999999999998877 88899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHH---------HHHHHhCCCHHHHHHHHHHHHHcCC-CCCCCccCHHHHHHHHHHH
Q 038852 297 DKEAMQSYKSLMERNFRMTPATCNTL---------LEVLLKHEKKEEAQALFEQMLDNHQ-PPNIQAVNSDTFNIMVNEC 366 (851)
Q Consensus 297 ~~~A~~l~~~~~~~~~~~~~~~~~~L---------i~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~~~~~~~~~~L~~~~ 366 (851)
-..|+++|++.+...++. .|... -..+.....+....++|-++..... .. |.++...|+..|
T Consensus 369 q~~Al~~L~~Wi~~~p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~-----DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKI-----DPDVQSGLGVLY 440 (579)
T ss_pred HHHHHHHHHHHHHhCccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCC-----ChhHHhhhHHHH
Confidence 999999999998765321 11100 0123334445666677766655322 22 788999999999
Q ss_pred HHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 038852 367 FKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERI 446 (851)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~ 446 (851)
.-.|+|++|+++|+.++...+. |...||.|+..++...+.++|+..|.++++.... =+.++..|+.+|...|.+
T Consensus 441 ~ls~efdraiDcf~~AL~v~Pn-----d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVKPN-----DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAY 514 (579)
T ss_pred hcchHHHHHHHHHHHHHhcCCc-----hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhH
Confidence 9999999999999999988777 9999999999999999999999999999987543 556667799999999999
Q ss_pred HHHHHHHHHHHHcCCc---------cchhHHHHHHHHHHHcCCHHHHHHHHH
Q 038852 447 DDALELFNRMVESGLR---------VVVSFGTKVFNELITKGKVAECAPILT 489 (851)
Q Consensus 447 ~~A~~~~~~m~~~~~~---------~~~~~~~~L~~~~~~~g~~~~A~~ll~ 489 (851)
++|.+.|-.++....+ .+..++..|=.++...++.|-+.+...
T Consensus 515 kEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 515 KEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred HHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 9999999988753211 123455556677777888776555543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-08 Score=113.22 Aligned_cols=166 Identities=13% Similarity=0.035 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSS-NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~-~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
...|..++..+...|+.+++.+.+.+..+..+...+. ......+..+...|++++|.++++++++.... |...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-h
Confidence 4566777777777788888777777776665443332 22333445566778888888888888776444 4444442 3
Q ss_pred HHHHhcC----CHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q 038852 254 SGFLNLG----NLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKH 329 (851)
Q Consensus 254 ~~~~~~g----~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~ 329 (851)
..+...| ..+.+.+.++..... ...+......+..++...|++++|++.++++++.... +...+..+..+|...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHc
Confidence 3333333 333333333321111 1111222223334444445555555555554444322 223344444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 038852 330 EKKEEAQALFEQMLD 344 (851)
Q Consensus 330 g~~~~A~~l~~~m~~ 344 (851)
|++++|+.++++.+.
T Consensus 162 g~~~eA~~~l~~~l~ 176 (355)
T cd05804 162 GRFKEGIAFMESWRD 176 (355)
T ss_pred CCHHHHHHHHHhhhh
Confidence 455555544444443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-09 Score=120.60 Aligned_cols=357 Identities=12% Similarity=0.151 Sum_probs=212.3
Q ss_pred CHHHHHHHHHH--HHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--------
Q 038852 138 TVFTCNAIIAA--MYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPV-------- 207 (851)
Q Consensus 138 ~~~~~~~li~~--~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~-------- 207 (851)
|..+-..+++. |...|+.|.|.+-++.+ .+...|..|+++|.+..++|-|.-.+..|....+.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 45555555543 44678888888887765 24567888999888888888777666555332111
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHH
Q 038852 208 GPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATF 287 (851)
Q Consensus 208 ~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l 287 (851)
.++ .+-..++...+..|.+++|+.+|++..+. ..|-..|-..|.+++|.++-+.--+.. -..+|...
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNY 864 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHH
Confidence 111 22223344456778888888888877653 334456667788888887765422221 23466666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHH-HHHHHcCCCCCCCccCHHHHHHHHHHH
Q 038852 288 MEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALF-EQMLDNHQPPNIQAVNSDTFNIMVNEC 366 (851)
Q Consensus 288 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~-~~m~~~~~~p~~~~~~~~~~~~L~~~~ 366 (851)
..-+...+|.+.|+++|++.-.. .++ +-..+ .++-.+++.| +++. |...|...+..+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~h-------afe-v~rmL---~e~p~~~e~Yv~~~~-----------d~~L~~WWgqYl 922 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVH-------AFE-VFRML---KEYPKQIEQYVRRKR-----------DESLYSWWGQYL 922 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCCh-------HHH-HHHHH---HhChHHHHHHHHhcc-----------chHHHHHHHHHH
Confidence 66677778888888888764322 111 11111 1122222222 2221 456777777777
Q ss_pred HHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 038852 367 FKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERI 446 (851)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~ 446 (851)
...|++|.|+.+|..+.+ |.++++..|-.|+.++|-.+-++- -|......|++.|...|++
T Consensus 923 ES~GemdaAl~~Y~~A~D-------------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v 983 (1416)
T KOG3617|consen 923 ESVGEMDAALSFYSSAKD-------------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDV 983 (1416)
T ss_pred hcccchHHHHHHHHHhhh-------------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHH
Confidence 888888999888887732 777888888888888888876653 2666677788888888888
Q ss_pred HHHHHHHHHHHHcC--Ccc--chhHHHHHHHHHHH--cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 038852 447 DDALELFNRMVESG--LRV--VVSFGTKVFNELIT--KGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSK 520 (851)
Q Consensus 447 ~~A~~~~~~m~~~~--~~~--~~~~~~~L~~~~~~--~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~ 520 (851)
.+|+.+|.++.... ++. ...+-..|++.... ..+.-.|.++|++.-- -+...+..|-++|.+.+|+
T Consensus 984 ~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kAL 1055 (1416)
T KOG3617|consen 984 VKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKAL 1055 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHH
Confidence 88888888765321 000 00000112222222 2233334444444321 1222344566666666666
Q ss_pred HHHHH--------HH--HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038852 521 DIVDQ--------MM--KYGVGITPALQDFVRETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 521 ~~~~~--------m~--~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~ 563 (851)
++.-+ ++ +.+...|+.+.+-..+.+....++++|..++-..++
T Consensus 1056 elAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1056 ELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 54211 11 344456777777777777777777777777665543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-09 Score=103.79 Aligned_cols=199 Identities=17% Similarity=0.089 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHH
Q 038852 317 ATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVA 396 (851)
Q Consensus 317 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~ 396 (851)
.+...|...|...|+...|.+-++++++.+ |+ +..++..++..|.+.|+.+.|.+.|+++....+. +..
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps----~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-----~Gd 104 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD--PS----YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-----NGD 104 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc----cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-----ccc
Confidence 345567788889999999999999998854 33 6788899999999999999999999998887776 556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Q 038852 397 GYNNIIARYCENEMLEEAEKLLREISTKSLSP-DVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNEL 475 (851)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~ 475 (851)
+.|+....+|..|++++|...|++.+....-+ -..+|..++.|..+.|+.+.|.++|++.++.+......... ++...
T Consensus 105 VLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~-~a~~~ 183 (250)
T COG3063 105 VLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLE-LARLH 183 (250)
T ss_pred hhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHH-HHHHH
Confidence 68888888999999999999999888753222 25688888888899999999999999999887655555443 77888
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038852 476 ITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 476 ~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~ 528 (851)
.+.|++..|.-++++....+. .+...+...|+.-...|+.+.+-++=..+.+
T Consensus 184 ~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 184 YKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888888888888888877765 6777777777877888887777766555554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-08 Score=127.92 Aligned_cols=348 Identities=16% Similarity=0.044 Sum_probs=226.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc--------cchhhHHHHHHH
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLV--------YDGVVNATFMEW 290 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~--------~d~~~~~~li~~ 290 (851)
..+...|+++.+..+++.+.......+.......+..+...|++++|..++..+...-.. ........+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 345556777777777765422111113333445666777889999999999887643111 112233344556
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHH
Q 038852 291 WFNQGKDKEAMQSYKSLMERNFRMTP----ATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNEC 366 (851)
Q Consensus 291 ~~~~g~~~~A~~l~~~~~~~~~~~~~----~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~ 366 (851)
+...|++++|..+++..++.....+. ..++.+..++...|++++|..++++++..............++..++.++
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 77899999999999998874222221 34566777888999999999999998753221110000123556778889
Q ss_pred HHcCChHHHHHHHHHhccCCCCCCC---ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHH
Q 038852 367 FKHGKFSEAIETFKKAGTHPKSKPF---AMDVAGYNNIIARYCENEMLEEAEKLLREISTKS--LSP--DVTTFRTLIDA 439 (851)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p--d~~~~~~Ll~~ 439 (851)
...|++++|..+++++.......+. ......+..+...+...|++++|...+.+..... ..+ ....+..++..
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 9999999999999887543222111 1123345566777888899999999998876531 111 23345567778
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC--ccchhHH----HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHH
Q 038852 440 YLKVERIDDALELFNRMVESGL--RVVVSFG----TKVFNELITKGKVAECAPILTKMGEKDPKPDF---LIYDVVVRGL 510 (851)
Q Consensus 440 ~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~----~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~---~~~~~ll~a~ 510 (851)
+...|++++|.+.++++..... .....+. ...+..+...|+.+.|..++............ ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 8899999999999999865311 1111110 11224455689999999998876653222111 1245677788
Q ss_pred HhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCC
Q 038852 511 CNEGLFDMSKDIVDQMMKY----GVGI-TPALQDFVRETFGKAGRGEEIERVLNADRWGYA 566 (851)
Q Consensus 511 ~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~ 566 (851)
...|++++|..++++++.. +... .......++.++.+.|+.++|.+.+.+......
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 8999999999999998753 2222 123455688899999999999999999887553
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.7e-09 Score=114.25 Aligned_cols=291 Identities=14% Similarity=0.153 Sum_probs=186.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------
Q 038852 216 HLTKGFVDAGRIGEAVDLLRDMLSRQLGADS-------------LVYNNLISGFLNLGNLEKANELFDELKQR------- 275 (851)
Q Consensus 216 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------------~~~~~Li~~~~~~g~~~~A~~~~~~~~~~------- 275 (851)
..|..|++.|...+|......-.+. ..|. ..|...++.|.+..++++|+++|++--..
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l--~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaiela 697 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEEL--LADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELA 697 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHh--hccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHH
Confidence 3566788888877766543211110 1122 34445555566666667777666542111
Q ss_pred --CCccc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCC
Q 038852 276 --CLVYD-GVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQ 352 (851)
Q Consensus 276 --~~~~d-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 352 (851)
.+... +..-.....-+...|.++.|+..|-++. .....+.+....+.+.+|+.+++.+.+....
T Consensus 698 rfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~~---- 764 (1636)
T KOG3616|consen 698 RFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKTA---- 764 (1636)
T ss_pred HhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc----
Confidence 01001 1111223334455566666666554432 2233456667788999999999988776543
Q ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038852 353 AVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTT 432 (851)
Q Consensus 353 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~ 432 (851)
...|-.++..|...|+++.|.++|.+.. . ++..|.+|.+.|+++.|.++-++.. |.+.....
T Consensus 765 ---s~yy~~iadhyan~~dfe~ae~lf~e~~-----------~--~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~ 826 (1636)
T KOG3616|consen 765 ---SGYYGEIADHYANKGDFEIAEELFTEAD-----------L--FKDAIDMYGKAGKWEDAFKLAEECH--GPEATISL 826 (1636)
T ss_pred ---cccchHHHHHhccchhHHHHHHHHHhcc-----------h--hHHHHHHHhccccHHHHHHHHHHhc--CchhHHHH
Confidence 3467888999999999999999998762 2 6778899999999999999987765 44445667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038852 433 FRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCN 512 (851)
Q Consensus 433 ~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~ 512 (851)
|.+-..-+-+.|++.+|..+|-.+-+-+ ..+.+|-+.|..++.+++.++-.-.. -..|-..+..-|..
T Consensus 827 yiakaedldehgkf~eaeqlyiti~~p~---------~aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~ 894 (1636)
T KOG3616|consen 827 YIAKAEDLDEHGKFAEAEQLYITIGEPD---------KAIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEA 894 (1636)
T ss_pred HHHhHHhHHhhcchhhhhheeEEccCch---------HHHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHh
Confidence 7777777888999999988875543321 25677888899888888887653321 22355556667777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038852 513 EGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNA 560 (851)
Q Consensus 513 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~ 560 (851)
.|++..|.+.|-++-+ +...+++|...+.|++|.++-+.
T Consensus 895 ~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 895 EGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred ccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc
Confidence 7888888777755433 34455666666666666665543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-08 Score=125.79 Aligned_cols=313 Identities=12% Similarity=0.063 Sum_probs=142.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCC-----C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH----HHH
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVG-----P--SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADS----LVY 249 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~-----p--~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~ 249 (851)
....+...|++++|..+++.+.+..... + .......+...+...|++++|..+++++++.....+. ..+
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 3344455566666666666554321110 0 1112222334445566666666666666542111111 233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCc-----cchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh----cCC---CCHH
Q 038852 250 NNLISGFLNLGNLEKANELFDELKQRCLV-----YDGVVNATFMEWWFNQGKDKEAMQSYKSLMER----NFR---MTPA 317 (851)
Q Consensus 250 ~~Li~~~~~~g~~~~A~~~~~~~~~~~~~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~----~~~---~~~~ 317 (851)
+.++.++...|++++|...++++...... .....+..+..++...|++++|...+++.+.. +.. ....
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 44555556666666666666665532111 11223344455566666666666666655442 110 0112
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHH
Q 038852 318 TCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAG 397 (851)
Q Consensus 318 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~ 397 (851)
.+..+..++...|++++|...+++++....... .......+..++.++...|++++|.+.++.+...............
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 233444555556666666666666544211000 0001233444555666666666666666655332111110000000
Q ss_pred H--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCcc-chhH
Q 038852 398 Y--NNIIARYCENEMLEEAEKLLREISTKSLSPD---VTTFRTLIDAYLKVERIDDALELFNRMVES----GLRV-VVSF 467 (851)
Q Consensus 398 ~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~ 467 (851)
. ...+..+...|+.+.|..++........... ...+..+..++...|++++|..+|+++.+. +... ....
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 0 0111233345666666666555432111111 011234555556666666666666665542 1111 1122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 038852 468 GTKVFNELITKGKVAECAPILTKMGEK 494 (851)
Q Consensus 468 ~~~L~~~~~~~g~~~~A~~ll~~m~~~ 494 (851)
...+..+|...|+.++|.+.+.++++.
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333445555666666666666665543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.2e-09 Score=103.39 Aligned_cols=286 Identities=16% Similarity=0.148 Sum_probs=176.5
Q ss_pred CCccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCChhHHHHHHHHHHHcCCCCCCH--HHHH
Q 038852 103 PRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCN-AIIAAMYRAKRYDDAVALFKYFFDQADIVPNI--VSYN 179 (851)
Q Consensus 103 ~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~--~~~~ 179 (851)
.+..+..+...|....++..|...++.+-... |...-|. .-...+++.+.+.+|+++...|.+. ++. .+..
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~----~~L~~~~lq 116 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLYKACIYADALRVAFLLLDN----PALHSRVLQ 116 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC----HHHHHHHHH
Confidence 34567778889999999999999999976543 3333332 2355677899999999999988442 121 1122
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
.-..+....+|+..+..+++.....+ +..+.+..+....+.|++++|++-|..+.+.+---....|+ +.-+..+.
T Consensus 117 LqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYn-iALaHy~~ 191 (459)
T KOG4340|consen 117 LQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYN-LALAHYSS 191 (459)
T ss_pred HHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHH-HHHHHHhh
Confidence 22233456788888988888775333 56678888888889999999999999999875443556665 55566677
Q ss_pred CCHHHHHHHHHHHHhcCCccchhhHH----HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHH
Q 038852 260 GNLEKANELFDELKQRCLVYDGVVNA----TFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEA 335 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~~~~d~~~~~----~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A 335 (851)
|+++.|++...+++++|+.-....-. ..+++- ..|+ .+.+....+ +..+|.-...+.+.++++.|
T Consensus 192 ~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgN---t~~lh~Sal-------~eAfNLKaAIeyq~~n~eAA 260 (459)
T KOG4340|consen 192 RQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGN---TLVLHQSAL-------VEAFNLKAAIEYQLRNYEAA 260 (459)
T ss_pred hhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccc---hHHHHHHHH-------HHHhhhhhhhhhhcccHHHH
Confidence 99999999999999998772221110 000000 0000 011111110 13445455556677777777
Q ss_pred HHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHH
Q 038852 336 QALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAE 415 (851)
Q Consensus 336 ~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~ 415 (851)
.+.+-.|--+. ....|.+|..+++..-. .+++.+..+-+.-++...+. -..+|..++-.||++.-++.|-
T Consensus 261 ~eaLtDmPPRa----E~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf-----P~ETFANlLllyCKNeyf~lAA 330 (459)
T KOG4340|consen 261 QEALTDMPPRA----EEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF-----PPETFANLLLLYCKNEYFDLAA 330 (459)
T ss_pred HHHhhcCCCcc----cccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC-----ChHHHHHHHHHHhhhHHHhHHH
Confidence 77766653221 12225666666554332 23344444444444333232 4566777777888887777777
Q ss_pred HHHHH
Q 038852 416 KLLRE 420 (851)
Q Consensus 416 ~l~~~ 420 (851)
+++.+
T Consensus 331 DvLAE 335 (459)
T KOG4340|consen 331 DVLAE 335 (459)
T ss_pred HHHhh
Confidence 77654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-09 Score=103.53 Aligned_cols=206 Identities=11% Similarity=0.027 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 356 SDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRT 435 (851)
Q Consensus 356 ~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~ 435 (851)
..+...|+..|...|++..|.+-++++++.+++ +..+|..+...|.+.|+.+.|.+.|++.++.... +..+.|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-----~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNN 108 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPS-----YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNN 108 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhh
Confidence 346778899999999999999999999998877 8899999999999999999999999999976432 5778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 038852 436 LIDAYLKVERIDDALELFNRMVESGL-RVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEG 514 (851)
Q Consensus 436 Ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g 514 (851)
.+..+|..|++++|...|++++..-. .....++..++.|..+.|+++.|.++|++.++.+.. ...+...+.+...+.|
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAG 187 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcc
Confidence 99999999999999999999997522 123344455888889999999999999999998655 4556777889999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCC
Q 038852 515 LFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPV 569 (851)
Q Consensus 515 ~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p 569 (851)
++..|..++++....+. .+.+.....+++-.+.|+-+.|.++=..+...||...
T Consensus 188 ~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 188 DYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred cchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 99999999999987665 8888888899999999999999999888888887543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8e-09 Score=113.11 Aligned_cols=57 Identities=11% Similarity=-0.027 Sum_probs=34.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCC
Q 038852 508 RGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAA 567 (851)
Q Consensus 508 ~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~ 567 (851)
+-.+..+-++-|.++-+...+.. ...+...++..+...|++++|.+.|-+..+....
T Consensus 971 d~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~edaskhyveaiklnty 1027 (1636)
T KOG3616|consen 971 DFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTY 1027 (1636)
T ss_pred hhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhhhhHhhHHHhhcccc
Confidence 33445555666666555544432 2333344666778889999998887777665443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.5e-07 Score=101.81 Aligned_cols=228 Identities=18% Similarity=0.198 Sum_probs=132.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAA--MYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCD 187 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~ 187 (851)
-|...+..+++..|.....++++.. |+. .|..++.+ +.+.|+.++|..+++.. ...+. .|..|...+-.+|.+
T Consensus 15 pi~d~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~~~~-~D~~tLq~l~~~y~d 89 (932)
T KOG2053|consen 15 PIYDLLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEAL-YGLKG-TDDLTLQFLQNVYRD 89 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhh-ccCCC-CchHHHHHHHHHHHH
Confidence 3555677788888888888877654 332 23333333 35788888988888765 32222 277788888888888
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-C------
Q 038852 188 EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL-G------ 260 (851)
Q Consensus 188 ~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~-g------ 260 (851)
.|.+++|..+|+++.... |+......+..+|++.+++.+-.++--++.+.-.+ +...+=+++..+... .
T Consensus 90 ~~~~d~~~~~Ye~~~~~~---P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~ 165 (932)
T KOG2053|consen 90 LGKLDEAVHLYERANQKY---PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELL 165 (932)
T ss_pred HhhhhHHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccc
Confidence 899999999998887754 45667777778888888776544443333332222 333333344333321 1
Q ss_pred ---CHHHHHHHHHHHHhcC-CccchhhHHHHHHHHHHcCCHHHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHhCCCHHHH
Q 038852 261 ---NLEKANELFDELKQRC-LVYDGVVNATFMEWWFNQGKDKEAMQSYK-SLMERNFRMTPATCNTLLEVLLKHEKKEEA 335 (851)
Q Consensus 261 ---~~~~A~~~~~~~~~~~-~~~d~~~~~~li~~~~~~g~~~~A~~l~~-~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A 335 (851)
-+.-|.+.++.+++.+ ..-...-.......+...|++++|++++. ...+.-...+...-+.-+..+...+++.+.
T Consensus 166 ~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 166 DPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred cchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 1233455555555543 22122222333344556677777777773 333433333444444555555566666666
Q ss_pred HHHHHHHHHcC
Q 038852 336 QALFEQMLDNH 346 (851)
Q Consensus 336 ~~l~~~m~~~~ 346 (851)
.++..+++.++
T Consensus 246 ~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 246 FELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhC
Confidence 66655555544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.8e-07 Score=98.05 Aligned_cols=412 Identities=8% Similarity=0.022 Sum_probs=240.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 038852 136 RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYR 215 (851)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~ 215 (851)
+.|+.+|+.||.-+... .++++.+.++.++.... -....|..-|....+..+++..+++|.+++... .+.+.|.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP--~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv---LnlDLW~ 90 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFP--SSPRAWKLYIERELASKDFESVEKLFSRCLVKV---LNLDLWK 90 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCC--CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---hhHhHHH
Confidence 56889999999866544 89999999999876433 345678888999999999999999999998753 3677787
Q ss_pred HHHHHHHH-cCCHH----HHHHHHHHHHh-cCCCC-CHHHHHHHHHHH---------HhcCCHHHHHHHHHHHHhcCCcc
Q 038852 216 HLTKGFVD-AGRIG----EAVDLLRDMLS-RQLGA-DSLVYNNLISGF---------LNLGNLEKANELFDELKQRCLVY 279 (851)
Q Consensus 216 ~Li~~~~~-~g~~~----~A~~l~~~m~~-~g~~p-d~~~~~~Li~~~---------~~~g~~~~A~~~~~~~~~~~~~~ 279 (851)
..+..-.+ .++.. .....|+-++. .|.++ ....|+..+..+ ....+++..+++|.+++..-+.-
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 77765444 23322 22333443333 33221 223455444433 23335667778888876542221
Q ss_pred chhhHHHH------HHH-------HHHcCCHHHHHHHHHHHHH--hcCCCCH---------------HHHHHHHHHHHhC
Q 038852 280 DGVVNATF------MEW-------WFNQGKDKEAMQSYKSLME--RNFRMTP---------------ATCNTLLEVLLKH 329 (851)
Q Consensus 280 d~~~~~~l------i~~-------~~~~g~~~~A~~l~~~~~~--~~~~~~~---------------~~~~~Li~~~~~~ 329 (851)
=..+|+.. ++. --+..++..|..+++++.. +|...+. ..|..+|..-..+
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 11122211 111 1123456677777776653 2221111 1244444432211
Q ss_pred CC--------HHHHHHHHHHHHH-cCCCCCCCccCHHHHHHHHH-------HHHHcCC-------hHHHHHHHHHhccCC
Q 038852 330 EK--------KEEAQALFEQMLD-NHQPPNIQAVNSDTFNIMVN-------ECFKHGK-------FSEAIETFKKAGTHP 386 (851)
Q Consensus 330 g~--------~~~A~~l~~~m~~-~~~~p~~~~~~~~~~~~L~~-------~~~~~g~-------~~~A~~~~~~~~~~~ 386 (851)
+- .....-+|+..+. .+. ...+|..... .+...|+ .+++..++++.++..
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~-------~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l 323 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGY-------HPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL 323 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 11 0122223333322 122 2333333222 3333343 456666666654321
Q ss_pred CCCCCccCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Q 038852 387 KSKPFAMDVAGYNNIIARYCENE---MLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRV 463 (851)
Q Consensus 387 ~~~~~~~d~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~ 463 (851)
.. .+...|..+...-...- ..+....++++++..-..--..+|..+++.-.+..-++.|..+|.++.+.+...
T Consensus 324 ~~----~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~ 399 (656)
T KOG1914|consen 324 LK----ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR 399 (656)
T ss_pred HH----HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc
Confidence 11 03333333332211111 255566666666654222123467778888888888899999999998877655
Q ss_pred -chhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHH
Q 038852 464 -VVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGI--TPALQDF 540 (851)
Q Consensus 464 -~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~ 540 (851)
.+.++.+++ -|...+|.+-|.++|+--+++- .-+...-...++-+.+.++-..|+.+|++++..++.+ ...+|..
T Consensus 400 hhVfVa~A~m-Ey~cskD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r 477 (656)
T KOG1914|consen 400 HHVFVAAALM-EYYCSKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDR 477 (656)
T ss_pred chhhHHHHHH-HHHhcCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHH
Confidence 444444444 4556788899999998866652 2234444567777888888899999999998774443 4577888
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhcCC
Q 038852 541 VRETFGKAGRGEEIERVLNADRWGYA 566 (851)
Q Consensus 541 L~~~~~~~G~~~eA~~ll~~~~~~~~ 566 (851)
+++.-..-|+++.++++-+++...|+
T Consensus 478 ~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 478 MLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 88888999999999988888877777
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.9e-08 Score=110.11 Aligned_cols=301 Identities=10% Similarity=0.035 Sum_probs=164.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 038852 243 GADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTL 322 (851)
Q Consensus 243 ~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~L 322 (851)
.++..+|..++++-...|+.+.|..++.+|+++|+..+...|..|+.+ .++..-++.+++.|.+.|+.|+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 468888999999999999999999999999999988777766666544 77888888888888888888888887766
Q ss_pred HHHHHhCCCHHHHH-----------HHHHHHHH-------------------------cCCCCCCCccCHHHHHHHHHHH
Q 038852 323 LEVLLKHEKKEEAQ-----------ALFEQMLD-------------------------NHQPPNIQAVNSDTFNIMVNEC 366 (851)
Q Consensus 323 i~~~~~~g~~~~A~-----------~l~~~m~~-------------------------~~~~p~~~~~~~~~~~~L~~~~ 366 (851)
+..+.++|....+. .++..|.. .|+.- .. +...++.-.
T Consensus 278 vip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~-----~~-aiws~c~~l 351 (1088)
T KOG4318|consen 278 VIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDI-----LE-AIWSMCEKL 351 (1088)
T ss_pred HHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhcccc-----ch-HHHHHHHHH
Confidence 66555543322111 11111111 11110 11 112222222
Q ss_pred HHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCC----------------------HHHHHHHHHHHHhC
Q 038852 367 FKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEM----------------------LEEAEKLLREISTK 424 (851)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~----------------------~~~A~~l~~~m~~~ 424 (851)
...|+-++.+.+...+..- ......-++..|..++.-|.+.-+ ..+..+++...
T Consensus 352 ~hQgk~e~veqlvg~l~np-t~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l--- 427 (1088)
T KOG4318|consen 352 RHQGKGEEVEQLVGQLLNP-TLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL--- 427 (1088)
T ss_pred HHcCCCchHHHHHhhhcCC-ccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh---
Confidence 3356655555555544221 000011133444444444333111 11111111111
Q ss_pred CCCCCHH----------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Q 038852 425 SLSPDVT----------------------------TFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELI 476 (851)
Q Consensus 425 g~~pd~~----------------------------~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~ 476 (851)
.+|.. .-+.++..|+..-+..+++..-++....- ....|..|++.+.
T Consensus 428 --rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l---f~g~ya~Li~l~~ 502 (1088)
T KOG4318|consen 428 --RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL---FAGLYALLIKLMD 502 (1088)
T ss_pred --CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHhhhHH
Confidence 11111 11333444444444444443333332211 2245666777788
Q ss_pred HcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCH
Q 038852 477 TKGKVAECAPILTKMGEKD--PKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPA---LQDFVRETFGKAGRG 551 (851)
Q Consensus 477 ~~g~~~~A~~ll~~m~~~~--~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~---~~~~L~~~~~~~G~~ 551 (851)
...+.+.|..+.++....+ +..|...+..+.+.+.+.+...++..++.++.+.- ...+. ..--+.+....+|+.
T Consensus 503 ~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a-~n~~~~a~~~f~~lns~a~agqq 581 (1088)
T KOG4318|consen 503 LHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSA-ENEPLVAIILFPLLNSGAPAGQQ 581 (1088)
T ss_pred HHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHh-hCCchHHHHHHHHHhhhhhccCH
Confidence 8888888888888776542 33455567778888888888888888888887622 12221 112245555566766
Q ss_pred HHHHHHHHhhh
Q 038852 552 EEIERVLNADR 562 (851)
Q Consensus 552 ~eA~~ll~~~~ 562 (851)
+.-.++++-+.
T Consensus 582 e~Lkkl~d~lv 592 (1088)
T KOG4318|consen 582 EKLKKLADILV 592 (1088)
T ss_pred HHHHHHHHHHH
Confidence 66666665544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-06 Score=92.04 Aligned_cols=438 Identities=12% Similarity=0.099 Sum_probs=270.0
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
.+++.+|+.+-.. .++++++.+++++.. ..-....|...|....+.++|+...++|.+.+.+. -+...|...+.-
T Consensus 21 ~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv---LnlDLW~lYl~Y 95 (656)
T KOG1914|consen 21 DSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV---LNLDLWKLYLSY 95 (656)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---hhHhHHHHHHHH
Confidence 3556666665555 999999999998843 23456789999999999999999999999987642 367778777763
Q ss_pred HHH-cCChH----HHHHHHHHHHHhCCCCC-CHHHHHHHHHHH---------HHcCCHHHHHHHHHHHHhcCCCCCH-HH
Q 038852 185 YCD-EGKVD----EGMNVFRRIIETAPVGP-SSNTYRHLTKGF---------VDAGRIGEAVDLLRDMLSRQLGADS-LV 248 (851)
Q Consensus 185 ~~~-~g~~~----~A~~l~~~~~~~~~~~p-~~~~~~~Li~~~---------~~~g~~~~A~~l~~~m~~~g~~pd~-~~ 248 (851)
-.+ .|+.. .-...|+-+++..+..+ +...|+..+..+ ....+++...++|.+++..-+. +. ..
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~-nlEkL 174 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH-NLEKL 174 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc-cHHHH
Confidence 332 23332 33455666666655422 223455555433 2334567778888888764332 22 22
Q ss_pred H------HHHHHHH-------HhcCCHHHHHHHHHHHHh--cCCccch---------------hhHHHHHHHHHHcCCH-
Q 038852 249 Y------NNLISGF-------LNLGNLEKANELFDELKQ--RCLVYDG---------------VVNATFMEWWFNQGKD- 297 (851)
Q Consensus 249 ~------~~Li~~~-------~~~g~~~~A~~~~~~~~~--~~~~~d~---------------~~~~~li~~~~~~g~~- 297 (851)
| ..-|+.. -+..++-.|+++++++.. +|..... ..|..+|..-..++--
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 2 2212111 123356777777777653 2322111 1244444432222211
Q ss_pred -------HHHHHHHHHHHH-hcCCCCHHHHHHH-------HHHHHhCCC-------HHHHHHHHHHHHHcCCCCCCCccC
Q 038852 298 -------KEAMQSYKSLME-RNFRMTPATCNTL-------LEVLLKHEK-------KEEAQALFEQMLDNHQPPNIQAVN 355 (851)
Q Consensus 298 -------~~A~~l~~~~~~-~~~~~~~~~~~~L-------i~~~~~~g~-------~~~A~~l~~~m~~~~~~p~~~~~~ 355 (851)
....-+|+..+. .+..+ .+|.-. ...+.+.|+ .+++.+++++.++.-..- +
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~p--eiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~-----~ 327 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHP--EIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE-----N 327 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH-----H
Confidence 112222333222 12222 222222 223333333 567778888776632221 3
Q ss_pred HHHHHHHHHHHHHcC---ChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHH
Q 038852 356 SDTFNIMVNECFKHG---KFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSP-DVT 431 (851)
Q Consensus 356 ~~~~~~L~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~ 431 (851)
..+|..+...-...- ..+...+++++++...... -..+|..++....+..-++.|..+|.++.+.+..+ ++.
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~----~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVf 403 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDID----LTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVF 403 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccC----CceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhh
Confidence 445555544332222 2566667777775543322 23458888888888889999999999999887666 677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHH
Q 038852 432 TFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPD--FLIYDVVVRG 509 (851)
Q Consensus 432 ~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd--~~~~~~ll~a 509 (851)
++++++..|| .++.+.|.++|+--++.- ..+..+....++.+...++-..|..+|++.+..++.+| ..+|..++.-
T Consensus 404 Va~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 404 VAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 8888887765 578999999999887753 33445555678888999999999999999999855544 4689999999
Q ss_pred HHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 038852 510 LCNEGLFDMSKDIVDQMMKYG---VGITPALQDFVRETFGKAGRGEEIERVLNAD 561 (851)
Q Consensus 510 ~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~ 561 (851)
-.+.|++..++++-+++...- ..........+++.|.-.+.+..-..-++.+
T Consensus 482 ES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 999999999999988876421 2222234455677777666655544444444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-08 Score=107.08 Aligned_cols=216 Identities=12% Similarity=0.083 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG-KVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g-~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
.++..+-.++...++.++|+.++++++...+ -+..+|+....++...| ++++++++++++++.++. +..+|+...
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP--~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk--nyqaW~~R~ 113 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNP--GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK--NYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc--chHHhHHHH
Confidence 3444444445556666677777776665432 23345555555556665 456666666666666554 555566555
Q ss_pred HHHHHcCCH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCC
Q 038852 219 KGFVDAGRI--GEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGK 296 (851)
Q Consensus 219 ~~~~~~g~~--~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~ 296 (851)
.++.+.|+. ++++++++++++.+.+ |..+|+....++...|+++++++.++++++.++. +..+|+.
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~---------- 181 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQ---------- 181 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHH----------
Confidence 555555542 4556666666666555 5666666666666666666666666666665544 3333333
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC---CC----HHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHc
Q 038852 297 DKEAMQSYKSLMERNFRMTPATCNTLLEVLLKH---EK----KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH 369 (851)
Q Consensus 297 ~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~---g~----~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~ 369 (851)
...++.+. |. .++++++..+++.. .|+ |..+|+.+..++...
T Consensus 182 -------------------------R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--~P~----N~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 182 -------------------------RYFVITRSPLLGGLEAMRDSELKYTIDAILA--NPR----NESPWRYLRGLFKDD 230 (320)
T ss_pred -------------------------HHHHHHhccccccccccHHHHHHHHHHHHHh--CCC----CcCHHHHHHHHHhcC
Confidence 33333222 11 24566666666663 333 666777777777662
Q ss_pred ----CChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHh
Q 038852 370 ----GKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCE 407 (851)
Q Consensus 370 ----g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~ 407 (851)
++..+|.+++.++...... +......|++.|+.
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~~-----s~~al~~l~d~~~~ 267 (320)
T PLN02789 231 KEALVSDPEVSSVCLEVLSKDSN-----HVFALSDLLDLLCE 267 (320)
T ss_pred CcccccchhHHHHHHHhhcccCC-----cHHHHHHHHHHHHh
Confidence 3345566666665443222 45556666666654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-08 Score=105.74 Aligned_cols=144 Identities=7% Similarity=0.036 Sum_probs=117.6
Q ss_pred HHHHHH-HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 038852 110 RVQSLI-RAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAK-RYDDAVALFKYFFDQADIVPNIVSYNNLINTYCD 187 (851)
Q Consensus 110 ll~~l~-~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~ 187 (851)
.+++++ ..++.++|+.+.++++... .-+..+|+....++.+.| ++++++.++++++.... .+..+|+....++.+
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np--knyqaW~~R~~~l~~ 118 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP--KNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC--cchHHhHHHHHHHHH
Confidence 344444 4578999999999999765 335567888877888887 68999999999987643 456678888777778
Q ss_pred cCCh--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 188 EGKV--DEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 188 ~g~~--~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
.|+. ++++++++++++.++. |..+|+....++...|+++++++.++++++.++. |..+|+....++.+.
T Consensus 119 l~~~~~~~el~~~~kal~~dpk--Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAK--NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence 8864 7889999999999876 8999999999999999999999999999999877 888898887776655
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.5e-07 Score=104.07 Aligned_cols=272 Identities=14% Similarity=0.127 Sum_probs=156.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG 189 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g 189 (851)
++...+..+-+++|..+|++. ..+..+.+.||. .-+.++.|.++-++. .....|..|+.+-...|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~-------n~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERC-------NEPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhh-------CChHHHHHHHHHHHhcC
Confidence 334444455555555555542 233444444443 235555555555544 13345666666666667
Q ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 190 KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELF 269 (851)
Q Consensus 190 ~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~ 269 (851)
.+.+|++-|-++ . |...|..++....+.|.+++-++++..+.+..-+|... +.|+-+|++.+++.+.++++
T Consensus 1119 ~v~dAieSyika-----d--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1119 LVKDAIESYIKA-----D--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred chHHHHHHHHhc-----C--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 666666666443 2 44466667777777777777776666665554443333 35666666666666554443
Q ss_pred HHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 038852 270 DELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPP 349 (851)
Q Consensus 270 ~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p 349 (851)
. .++..-...+++-|...|.++.|.-+|..+ ..|..|...+...|++..|.+.-+++-
T Consensus 1190 ~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAn------ 1247 (1666)
T KOG0985|consen 1190 A-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKAN------ 1247 (1666)
T ss_pred c-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhcc------
Confidence 1 234445555666666666666666666543 456667777777777777777665542
Q ss_pred CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C
Q 038852 350 NIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLS-P 428 (851)
Q Consensus 350 ~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p 428 (851)
+..+|..+..+|...+.+..|.-+=-. +.....-...|+..|-..|-+++.+.+++..+ |++ .
T Consensus 1248 -----s~ktWK~VcfaCvd~~EFrlAQiCGL~---------iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERA 1311 (1666)
T KOG0985|consen 1248 -----STKTWKEVCFACVDKEEFRLAQICGLN---------IIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERA 1311 (1666)
T ss_pred -----chhHHHHHHHHHhchhhhhHHHhcCce---------EEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHH
Confidence 455777777777766666554322111 11133345667777777888888877777665 322 1
Q ss_pred CHHHHHHHHHHHHHc
Q 038852 429 DVTTFRTLIDAYLKV 443 (851)
Q Consensus 429 d~~~~~~Ll~~~~~~ 443 (851)
....|+.|+-.|.+-
T Consensus 1312 HMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1312 HMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHHHHHHHhc
Confidence 234566666666554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.2e-07 Score=104.32 Aligned_cols=321 Identities=14% Similarity=0.173 Sum_probs=188.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAP-VGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNL 252 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~-~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L 252 (851)
|.......+.++...+-..+-+++++++.-.+. +.-+...-|.|+-..++. +..+..++.+++-..+.. .+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~-------~i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP-------DI 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch-------hH
Confidence 444455566777777777888888888754332 222233344444444443 344555566555443211 24
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCH
Q 038852 253 ISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKK 332 (851)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~ 332 (851)
+..+...+-+++|..+|++... +......|++ ..+..++|.++-+++.+ ..+|..++.+-...|..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n~------p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCNE------PAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhCC------hHHHHHHHHHHHhcCch
Confidence 4555666677788877776432 2233333332 34566666666555432 26788888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHH
Q 038852 333 EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLE 412 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 412 (851)
.+|++-|-++- |...|..++....+.|.|++-++++..+..+.. ....=..||-+|++.+++.
T Consensus 1121 ~dAieSyikad-----------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~------E~~id~eLi~AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1121 KDAIESYIKAD-----------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR------EPYIDSELIFAYAKTNRLT 1183 (1666)
T ss_pred HHHHHHHHhcC-----------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc------CccchHHHHHHHHHhchHH
Confidence 88887765442 566788888888888888888888877755422 2222345777888888877
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 038852 413 EAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMG 492 (851)
Q Consensus 413 ~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~ 492 (851)
+.++++. -||......+++-|...|.++.|.-+|..+. -|..|...+...|++..|.+.-+++-
T Consensus 1184 elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1184 ELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6655532 3566677778888888888888777776433 34456666777777777776655543
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038852 493 EKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNA 560 (851)
Q Consensus 493 ~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~ 560 (851)
+..||..+-.+|...+.+..| .|...++....+-...|++.|...|-++|-+.+++.
T Consensus 1248 ------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1248 ------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred ------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 334565555555554443332 122222233333344444444444444444444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.4e-08 Score=115.08 Aligned_cols=241 Identities=14% Similarity=0.140 Sum_probs=142.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 196 NVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA-----DSLVYNNLISGFLNLGNLEKANELFD 270 (851)
Q Consensus 196 ~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p-----d~~~~~~Li~~~~~~g~~~~A~~~~~ 270 (851)
+-|++.+..+|. +...|...+......++.++|.+++++++.. +.+ -...|.++++.-...|.-+...++|+
T Consensus 1445 eDferlvrssPN--SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1445 EDFERLVRSSPN--SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred HHHHHHHhcCCC--cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 344555554444 5556666666677777777777777776653 211 11356666666666666666777777
Q ss_pred HHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 038852 271 ELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPN 350 (851)
Q Consensus 271 ~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 350 (851)
++.+.+- ...+|..|...|.+.+++++|.++|+.|+++-- -...+|..++..+.+.++-+.|..++.++++.-.+-+
T Consensus 1522 RAcqycd--~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1522 RACQYCD--AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHhcc--hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 7665432 234566666677777777777777777766522 3445677777777777777777777777666322211
Q ss_pred CCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 038852 351 IQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPD- 429 (851)
Q Consensus 351 ~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd- 429 (851)
........+.+-++.|+.+++..+|+.....++. -...|+.+|+.-.+.|+.+.++++|++++..++.+.
T Consensus 1599 ----Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-----RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1599 ----HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-----RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred ----hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-----chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 3344555555666677777777777766655544 334466777777777777777777777766655443
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHH
Q 038852 430 -VTTFRTLIDAYLKVERIDDALE 451 (851)
Q Consensus 430 -~~~~~~Ll~~~~~~g~~~~A~~ 451 (851)
.+.|...+..-...|+-+.++.
T Consensus 1670 mKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1670 MKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred hHHHHHHHHHHHHhcCchhhHHH
Confidence 2344444444444444443333
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.5e-08 Score=115.84 Aligned_cols=219 Identities=16% Similarity=0.143 Sum_probs=179.5
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038852 126 LARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN---IVSYNNLINTYCDEGKVDEGMNVFRRII 202 (851)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd---~~~~~~Li~~~~~~g~~~~A~~l~~~~~ 202 (851)
-|++.+... +.....|...|......++.++|++++++++..-++.-. ...|.++++....-|.-+...++|+++.
T Consensus 1446 Dferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 355555443 345678888998899999999999999999886544332 3367788887777888899999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc-ch
Q 038852 203 ETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVY-DG 281 (851)
Q Consensus 203 ~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~-d~ 281 (851)
+.. . -..+|..|...|.+.+.+++|.++|+.|+++ +.-...+|..++..+.+.++-+.|.+++.++++.-..- ..
T Consensus 1525 qyc-d--~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1525 QYC-D--AYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred Hhc-c--hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 754 1 3457889999999999999999999999987 44467899999999999999999999999988764432 35
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 038852 282 VVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPN 350 (851)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 350 (851)
.+....+.+-+++|+.+++..+|+..+...++-. ..|+.+++.-.++|+.+.+..+|++++..++.+.
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRt-DlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRT-DLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccch-hHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 5667778888999999999999999998775433 6899999999999999999999999999887764
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.1e-08 Score=112.98 Aligned_cols=273 Identities=13% Similarity=0.176 Sum_probs=162.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 038852 126 LARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETA 205 (851)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~ 205 (851)
++..+...|+.|+.++|..+|..|+..|+.+.|- +|.-| +......+...++.++......++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm-~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFM-EIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhh-hcccccccchhHHHHHhcccccccccCCC----------
Confidence 4555556677888888888888888888887777 66666 33344445666777777777777665543
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCccchhhH
Q 038852 206 PVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQ-RCLVYDGVVN 284 (851)
Q Consensus 206 ~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-~~~~~d~~~~ 284 (851)
.|..++|..|..+|...||+.. |+...+ ....+...+...|.-..-..++..+.- .+..+|..
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~-- 143 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE-- 143 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH--
Confidence 4456688888888888887766 322222 122344445555655555555544321 12222322
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHH
Q 038852 285 ATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLK-HEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMV 363 (851)
Q Consensus 285 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~-~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~ 363 (851)
.++....-.|-++.+++++..+-...... .... +++-+.. ...+++-..+.+...+ .+ +..+|..++
T Consensus 144 -n~illlv~eglwaqllkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~-----~s~~l~a~l 211 (1088)
T KOG4318|consen 144 -NAILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVE---AP-----TSETLHAVL 211 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhc---CC-----ChHHHHHHH
Confidence 23333445566666666665443221110 1111 1222222 2334444444444333 23 677888888
Q ss_pred HHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 038852 364 NECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKV 443 (851)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~ 443 (851)
.+-...|+++.|..++.+|.+ +++..+...|..|+.+ .++...++.+++-|.+.|+.|+..|+...+..+.+.
T Consensus 212 ~~alaag~~d~Ak~ll~emke----~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N 284 (1088)
T KOG4318|consen 212 KRALAAGDVDGAKNLLYEMKE----KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSN 284 (1088)
T ss_pred HHHHhcCchhhHHHHHHHHHH----cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcc
Confidence 888888888888888888843 4455555555555544 677777888888888888888888887777766664
Q ss_pred CC
Q 038852 444 ER 445 (851)
Q Consensus 444 g~ 445 (851)
|.
T Consensus 285 ~~ 286 (1088)
T KOG4318|consen 285 GQ 286 (1088)
T ss_pred hh
Confidence 44
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.1e-08 Score=106.41 Aligned_cols=215 Identities=14% Similarity=0.158 Sum_probs=162.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 038852 249 YNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLK 328 (851)
Q Consensus 249 ~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~ 328 (851)
-..+...+...|-...|..+|+++. .|..++.+|+..|+..+|.++....+++ ++|...|..++++...
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 3457777888888888888888653 4566778888888888888888877773 4566788888887777
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhc
Q 038852 329 HEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCEN 408 (851)
Q Consensus 329 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~ 408 (851)
..-+++|.++++.... .+-..++....+.++++++.+.|+...+..+. -..+|..+..+..+.
T Consensus 470 ~s~yEkawElsn~~sa------------rA~r~~~~~~~~~~~fs~~~~hle~sl~~npl-----q~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISA------------RAQRSLALLILSNKDFSEADKHLERSLEINPL-----QLGTWFGLGCAALQL 532 (777)
T ss_pred hHHHHHHHHHhhhhhH------------HHHHhhccccccchhHHHHHHHHHHHhhcCcc-----chhHHHhccHHHHHH
Confidence 7778888888776533 23334444444578888888888887665544 667788888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHH
Q 038852 409 EMLEEAEKLLREISTKSLSP-DVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPI 487 (851)
Q Consensus 409 g~~~~A~~l~~~m~~~g~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~l 487 (851)
+++..|.+.|...... .| +...|+.|..+|.+.++..+|...+.++++.+..+...|-| .+....+.|.+++|++.
T Consensus 533 ek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWEN-ymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWEN-YMLVSVDVGEFEDAIKA 609 (777)
T ss_pred hhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeec-hhhhhhhcccHHHHHHH
Confidence 8888888888887754 34 46788889889999988889999999888887666655555 55667788889988888
Q ss_pred HHHHhhC
Q 038852 488 LTKMGEK 494 (851)
Q Consensus 488 l~~m~~~ 494 (851)
+.++.+.
T Consensus 610 ~~rll~~ 616 (777)
T KOG1128|consen 610 YHRLLDL 616 (777)
T ss_pred HHHHHHh
Confidence 8887654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-05 Score=91.19 Aligned_cols=197 Identities=13% Similarity=0.088 Sum_probs=137.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 038852 111 VQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK 190 (851)
Q Consensus 111 l~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~ 190 (851)
+..+.+.|+.++|..+++.....+.. |..+...+-.+|.+.+.+++|..+|+++.... |+......+..+|++.++
T Consensus 50 aLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~---P~eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY---PSEELLYHLFMAYVREKS 125 (932)
T ss_pred HHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHH
Confidence 34568899999999888876544433 88899999999999999999999999997654 567777888889999999
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhc
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG----------RIGEAVDLLRDMLSRQ-LGADSLVYNNLISGFLNL 259 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g----------~~~~A~~l~~~m~~~g-~~pd~~~~~~Li~~~~~~ 259 (851)
+.+-.++--++-+.-|. +...+=.++..+...- -..-|.+.++.+++.+ ..-+..-.......+...
T Consensus 126 yk~qQkaa~~LyK~~pk--~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~ 203 (932)
T KOG2053|consen 126 YKKQQKAALQLYKNFPK--RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQ 203 (932)
T ss_pred HHHHHHHHHHHHHhCCc--ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhc
Confidence 87655554444444333 4444444444444321 1345666777777665 211222233334455677
Q ss_pred CCHHHHHHHHH-HHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 038852 260 GNLEKANELFD-ELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR 313 (851)
Q Consensus 260 g~~~~A~~~~~-~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~ 313 (851)
|++++|.+++. ...+.-...+...-+.-++.+...+++.+..++..+++.++..
T Consensus 204 ~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 204 GKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred ccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 88999999994 4444444456666677788899999999999999999888753
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-07 Score=102.40 Aligned_cols=216 Identities=16% Similarity=0.198 Sum_probs=179.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH
Q 038852 214 YRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN 293 (851)
Q Consensus 214 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~ 293 (851)
-..+...+...|-..+|+.+|++.. .|..++.+|+..|+..+|..+....++ -.+|...|..++++...
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccC
Confidence 3557888999999999999998754 577889999999999999999988877 34578888888887777
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChH
Q 038852 294 QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFS 373 (851)
Q Consensus 294 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~ 373 (851)
..-+++|.++++....+ .-..+.....+.++++++.+.|+..++.+.- ...+|..++.+..+.+++.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl------q~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL------QLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc------chhHHHhccHHHHHHhhhH
Confidence 77788888888765443 1222333345579999999999998874332 6789999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038852 374 EAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELF 453 (851)
Q Consensus 374 ~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~ 453 (851)
.|.+.|.......+. +...||++..+|.+.++-.+|...+.+..+.+ .-+..+|...+....+.|.+++|++.+
T Consensus 537 ~av~aF~rcvtL~Pd-----~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPD-----NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred HHHHHHHHHhhcCCC-----chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHH
Confidence 999999999877666 78899999999999999999999999999876 446778888888889999999999999
Q ss_pred HHHHHc
Q 038852 454 NRMVES 459 (851)
Q Consensus 454 ~~m~~~ 459 (851)
.++.+.
T Consensus 611 ~rll~~ 616 (777)
T KOG1128|consen 611 HRLLDL 616 (777)
T ss_pred HHHHHh
Confidence 999864
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.1e-09 Score=108.42 Aligned_cols=249 Identities=16% Similarity=0.167 Sum_probs=133.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHH
Q 038852 257 LNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQ 336 (851)
Q Consensus 257 ~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~ 336 (851)
.-.|++..++.-++ ........+......+.++|...|+++.++.-+ .+.. .+.......+...+...++.+.++
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei---~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEI---KKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS----TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHh---ccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34455555554333 112222222333344445555555554433222 1111 233334443443333334445555
Q ss_pred HHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHH
Q 038852 337 ALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEK 416 (851)
Q Consensus 337 ~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 416 (851)
.-+++.+....... +..+....+.++...|++++|++++++. . +.......+.+|.+.+++|.|.+
T Consensus 87 ~~l~~~~~~~~~~~----~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~-----~lE~~al~Vqi~L~~~R~dlA~k 152 (290)
T PF04733_consen 87 EELKELLADQAGES----NEIVQLLAATILFHEGDYEEALKLLHKG-----G-----SLELLALAVQILLKMNRPDLAEK 152 (290)
T ss_dssp HHHHHCCCTS---C----HHHHHHHHHHHHCCCCHHHHHHCCCTTT-----T-----CHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHhccccc----cHHHHHHHHHHHHHcCCHHHHHHHHHcc-----C-----cccHHHHHHHHHHHcCCHHHHHH
Confidence 54444333222111 3334444455666677888887777543 1 56666677777888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 038852 417 LLREISTKSLSPDVTTFRTLIDAYL----KVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMG 492 (851)
Q Consensus 417 l~~~m~~~g~~pd~~~~~~Ll~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~ 492 (851)
.++.|.+. ..|. +...|+.++. ..+++.+|..+|+++.+. ...+....+.++.++...|++++|.+++++..
T Consensus 153 ~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 153 ELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 88888754 3333 2333333332 233578888888887654 34455666667777888888888888888877
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHc
Q 038852 493 EKDPKPDFLIYDVVVRGLCNEGLF-DMSKDIVDQMMKY 529 (851)
Q Consensus 493 ~~~~~pd~~~~~~ll~a~~~~g~~-~~A~~~~~~m~~~ 529 (851)
+.+.. |..++..++.++...|+. +.+.+++..+...
T Consensus 229 ~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 229 EKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 76544 566777777777777776 6666777776653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-07 Score=96.82 Aligned_cols=102 Identities=16% Similarity=0.214 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSS-NTYRH 216 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~-~~~~~ 216 (851)
...+..++..+.+.|++++|+..|++++......+. ..++..++.+|...|++++|+..|+++++..+..+.. .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 445555555566666666666666666554322221 1345556666666666666666666666655443322 23444
Q ss_pred HHHHHHHc--------CCHHHHHHHHHHHHhc
Q 038852 217 LTKGFVDA--------GRIGEAVDLLRDMLSR 240 (851)
Q Consensus 217 Li~~~~~~--------g~~~~A~~l~~~m~~~ 240 (851)
++.++... |++++|++.|+++++.
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 44444433 4455555555555544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-08 Score=107.86 Aligned_cols=257 Identities=16% Similarity=0.186 Sum_probs=169.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG 189 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g 189 (851)
-++.+.-.|.+..++..++ ........+......+.+++...|.++.++.-+.. +-.|.......+...+...+
T Consensus 7 ~vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~-----~~~~~l~av~~la~y~~~~~ 80 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK-----SSSPELQAVRLLAEYLSSPS 80 (290)
T ss_dssp HHHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T-----TSSCCCHHHHHHHHHHCTST
T ss_pred HHHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc-----CCChhHHHHHHHHHHHhCcc
Confidence 3567777899998886665 22222222344555677888889998876544332 12466666666655444435
Q ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 190 KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELF 269 (851)
Q Consensus 190 ~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~ 269 (851)
+-+.++.-+++.+.......+.......+.++...|++++|++++.+. -+.......+.+|++.++++.|.+.+
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l 154 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKEL 154 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHH
Confidence 556666655544332211123333334445666789999999988653 26777888899999999999999999
Q ss_pred HHHHhcCCccchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038852 270 DELKQRCLVYDGVVNATFMEWWFN----QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 270 ~~~~~~~~~~d~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 345 (851)
+.|.+.+ +..+...++.+|.. .+++.+|..+|+++.+. ...+..+.+.++.++...|++++|.+++++++..
T Consensus 155 ~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 155 KNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9998764 33444444444433 34689999999997665 4567888999999999999999999999998764
Q ss_pred CCCCCCCccCHHHHHHHHHHHHHcCCh-HHHHHHHHHhccCCCC
Q 038852 346 HQPPNIQAVNSDTFNIMVNECFKHGKF-SEAIETFKKAGTHPKS 388 (851)
Q Consensus 346 ~~~p~~~~~~~~~~~~L~~~~~~~g~~-~~A~~~~~~~~~~~~~ 388 (851)
+ ++ +..++.+++.+....|+. +.+.+++..+....+.
T Consensus 231 ~--~~----~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 231 D--PN----DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp ---CC----HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred c--cC----CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 4 33 788899999998898988 6677788887654443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-07 Score=96.76 Aligned_cols=190 Identities=16% Similarity=0.141 Sum_probs=135.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH--HHH
Q 038852 173 PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADS--LVY 249 (851)
Q Consensus 173 pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~~~ 249 (851)
.....+..++..+...|++++|+..|+++++..+..+. ..++..++.++...|++++|++.|+++++....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35677888999999999999999999999998765433 247888999999999999999999999987554222 256
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHH
Q 038852 250 NNLISGFLNL--------GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNT 321 (851)
Q Consensus 250 ~~Li~~~~~~--------g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~ 321 (851)
..++.++... |++++|++.|+++++.... +...+..+..... ... ... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~-------~~~-------~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN-------RLA-------GKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH-------HHH-------HHHHH
Confidence 6677777665 7788899999988876554 2222222111100 000 000 11224
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCC-CCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccC
Q 038852 322 LLEVLLKHEKKEEAQALFEQMLDNHQP-PNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTH 385 (851)
Q Consensus 322 Li~~~~~~g~~~~A~~l~~~m~~~~~~-p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 385 (851)
+...|.+.|++++|+..|+++++.... |. ....+..++.++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPA----TEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 667788889999999999998875321 21 4578888888999999999998888877543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=7e-07 Score=93.22 Aligned_cols=295 Identities=16% Similarity=0.134 Sum_probs=178.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
...........+.+..+|.+|++.+..+++... .++..|..-+..+...|++++|+--.+..++..+. .......+
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~p--d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~--~~k~~~r~ 123 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCP--DNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG--FSKGQLRE 123 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCc--cchhhhchhHHHHHHHHhHhhcccchhhheecCCC--ccccccch
Confidence 344555667777777888888888887766422 34556666777777778888877777666555433 23355556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc-cchhhHHHH-HHHHHHcC
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLV-YDGVVNATF-MEWWFNQG 295 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~-~d~~~~~~l-i~~~~~~g 295 (851)
..++...++..+|.+.|+. ...+ ....|+..++.+...... |....+..+ ..++...|
T Consensus 124 ~~c~~a~~~~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~ 183 (486)
T KOG0550|consen 124 GQCHLALSDLIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLG 183 (486)
T ss_pred hhhhhhhHHHHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcc
Confidence 6666666666666666651 1111 111122222222221111 111222222 34456677
Q ss_pred CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCC------ccCHHHHHHHHHHHHHc
Q 038852 296 KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQ------AVNSDTFNIMVNECFKH 369 (851)
Q Consensus 296 ~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~------~~~~~~~~~L~~~~~~~ 369 (851)
++++|..+--.+++.+.. +......-..++.-.++.+.|+..|.+.+..+..-... ..-...+..-++-..+.
T Consensus 184 ~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 184 DYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKN 262 (486)
T ss_pred cchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhc
Confidence 777777777666665532 12222222344455677788888888777643221100 00112233344556788
Q ss_pred CChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 038852 370 GKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPD-VTTFRTLIDAYLKVERIDD 448 (851)
Q Consensus 370 g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~Ll~~~~~~g~~~~ 448 (851)
|++.+|.++|.+++...+. ...++...|.....+..+.|+.++|+.-.++.++. .+. +..|..-+.++...++|++
T Consensus 263 G~y~~A~E~Yteal~idP~-n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPS-NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred cchhHHHHHHHHhhcCCcc-ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887655 55667888888888889999999999988888764 211 2334444567778889999
Q ss_pred HHHHHHHHHHcC
Q 038852 449 ALELFNRMVESG 460 (851)
Q Consensus 449 A~~~~~~m~~~~ 460 (851)
|++.|+++....
T Consensus 340 AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 340 AVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHhhc
Confidence 999999988764
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6e-07 Score=93.70 Aligned_cols=287 Identities=10% Similarity=0.017 Sum_probs=179.6
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
........+.+..++.+|+..+..++...+. ++..|..-+..+...|+|++|+--.+..++... -.......+..++
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd--~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKD--GFSKGQLREGQCH 127 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCC--Cccccccchhhhh
Confidence 4556677888888999999999999976533 466677777778889999999887766544221 1233455666777
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCHHHHHHH-HHHHHhcCCHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG-ADSLVYNNL-ISGFLNLGNLE 263 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~~~~~L-i~~~~~~g~~~ 263 (851)
...++..+|.+.|+.-- .| ....|+..++.++..... |...+|..| ..++...|+++
T Consensus 128 ~a~~~~i~A~~~~~~~~----------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~ 186 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQ----------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYD 186 (486)
T ss_pred hhhHHHHHHHHHhhhhh----------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccch
Confidence 77777777777666211 11 112223333333222211 222333322 23344556666
Q ss_pred HHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCH-----------HHHHHHHHHHHhCCCH
Q 038852 264 KANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTP-----------ATCNTLLEVLLKHEKK 332 (851)
Q Consensus 264 ~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~-----------~~~~~Li~~~~~~g~~ 332 (851)
+|..+--.+++.+.. +......-..++.-.++.+.|+..|.+.+..++.... ..|..-++-..+.|++
T Consensus 187 ~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y 265 (486)
T KOG0550|consen 187 EAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNY 265 (486)
T ss_pred hHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccch
Confidence 666665555554333 2222223333344455666666666666555432211 2233334556788999
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHH
Q 038852 333 EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLE 412 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 412 (851)
.+|.++|.+++. +.|+....+...|...+.+..+.|+.++|+.-.+++...+.. -+..|..-..++...++|+
T Consensus 266 ~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-----yikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 266 RKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-----YIKALLRRANCHLALEKWE 338 (486)
T ss_pred hHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-----HHHHHHHHHHHHHHHHHHH
Confidence 999999999987 556555557888999999999999999999999988766432 3344555556677788999
Q ss_pred HHHHHHHHHHhC
Q 038852 413 EAEKLLREISTK 424 (851)
Q Consensus 413 ~A~~l~~~m~~~ 424 (851)
+|++-|+.....
T Consensus 339 ~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 339 EAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHhh
Confidence 999999988765
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=105.20 Aligned_cols=277 Identities=16% Similarity=0.127 Sum_probs=176.5
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHH--c-CC-CCCCHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRP---TVFTCNAIIAAMYRAKRYDDAVALFKYFFD--Q-AD-IVPNIVSY 178 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~~~~--~-~~-~~pd~~~~ 178 (851)
.+..-...+++.|+....+.+|+.++..|... -..+|..|.++|.-.++|++|+++...=+. + .| -.-...+.
T Consensus 19 eLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKss 98 (639)
T KOG1130|consen 19 ELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSS 98 (639)
T ss_pred HHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccc
Confidence 34445678999999999999999999887431 235688888999999999999987543211 0 01 11123445
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 038852 179 NNLINTYCDEGKVDEGMNVFRRII----ETAPVGPSSNTYRHLTKGFVDAGR--------------------IGEAVDLL 234 (851)
Q Consensus 179 ~~Li~~~~~~g~~~~A~~l~~~~~----~~~~~~p~~~~~~~Li~~~~~~g~--------------------~~~A~~l~ 234 (851)
..|.+.+-..|.|++|+.+..+-+ +.+.......++..|..+|...|+ ++.|+++|
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 567777778889988876554432 222122234577788888877654 23445555
Q ss_pred HHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-CccchhhHHHHHHHHHHcCCHHHHHHHH
Q 038852 235 RDMLSR----QLG-ADSLVYNNLISGFLNLGNLEKANELFDELKQR----C-LVYDGVVNATFMEWWFNQGKDKEAMQSY 304 (851)
Q Consensus 235 ~~m~~~----g~~-pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~----~-~~~d~~~~~~li~~~~~~g~~~~A~~l~ 304 (851)
.+-++. |-. .-...|..|+..|+-+|+++.|+...+.-++. | .......+..+.+++.-.|+++.|.+.|
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 443321 100 01246777888888888999998877654332 1 1123456777888888888888888888
Q ss_pred HHHHHhcC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHH
Q 038852 305 KSLMERNF-----RMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETF 379 (851)
Q Consensus 305 ~~~~~~~~-----~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~ 379 (851)
+..+...+ ......+..|.+.|.-..++++|+.++.+-+......+.......++..|+.+|...|..++|+.+.
T Consensus 259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 77554322 1223455667888888888888888877654321111111114567777888888888888887776
Q ss_pred HHh
Q 038852 380 KKA 382 (851)
Q Consensus 380 ~~~ 382 (851)
+..
T Consensus 339 e~h 341 (639)
T KOG1130|consen 339 ELH 341 (639)
T ss_pred HHH
Confidence 654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.4e-07 Score=104.29 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHH
Q 038852 318 TCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAG 397 (851)
Q Consensus 318 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~ 397 (851)
.+..|+.+|.+.|+.++|..+|+++++.+ |+ |..+.+.++..|... ++++|+.++.++..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~----n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~------------- 177 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD--RD----NPEIVKKLATSYEEE-DKEKAITYLKKAIY------------- 177 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC--cc----cHHHHHHHHHHHHHh-hHHHHHHHHHHHHH-------------
Confidence 44456666666666666666666666543 22 566666666666666 66666666655521
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH
Q 038852 398 YNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELIT 477 (851)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~ 477 (851)
.|...+++.++++++.++...... |...+..+.......- +..-.+.++..+...|..
T Consensus 178 ------~~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~---------------~~~~~~~~~~~l~~~y~~ 235 (906)
T PRK14720 178 ------RFIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR---------------EFTRLVGLLEDLYEPYKA 235 (906)
T ss_pred ------HHHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh---------------ccchhHHHHHHHHHHHhh
Confidence 134444555666666665543211 2222222221111110 111112222335555556
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 038852 478 KGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLC 511 (851)
Q Consensus 478 ~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~ 511 (851)
.++|++++.+|+.+++...+ |......++.+|.
T Consensus 236 ~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 236 LEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 66666666666666655433 4444444555444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.5e-07 Score=105.61 Aligned_cols=132 Identities=10% Similarity=0.101 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----------
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPV---------- 207 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~---------- 207 (851)
+...|..|+..|...+++++|+.+.+..++..+-... .|..++..+...++++++..+ .++..-+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~--~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS--ALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee--hHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 4556666776666777777777777666554332222 233333345555554444433 22222111
Q ss_pred -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 208 -------GPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 208 -------~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
.-+..++..|+.||-+.|+.++|..+|+++++.+.. |..+.|.++..|... ++++|++++.+++..
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 013346666777777777777777777777777655 677777777777777 777777777766654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.3e-09 Score=78.05 Aligned_cols=50 Identities=38% Similarity=0.687 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038852 209 PSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN 258 (851)
Q Consensus 209 p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~ 258 (851)
||..+|+.||.+|++.|++++|+++|++|.+.|+.||..||+.|+++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56667777777777777777777777777777777777777777777653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.4e-09 Score=78.36 Aligned_cols=50 Identities=38% Similarity=0.692 Sum_probs=45.8
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 038852 393 MDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLK 442 (851)
Q Consensus 393 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~ 442 (851)
||+.+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.|+.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 58899999999999999999999999999999999999999999998864
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.9e-07 Score=90.39 Aligned_cols=164 Identities=20% Similarity=0.153 Sum_probs=129.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
|..+ ..+...+.-.|+-+.+..+....... ...|....+.++...++.|++.+|+..|.++....+. |..+|+.+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~--d~~~~~~l 140 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT--DWEAWNLL 140 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC--ChhhhhHH
Confidence 4444 56677777788888888887775433 2346666777888888999999999999998877655 88899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCH
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKD 297 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~ 297 (851)
..+|.+.|++++|..-|.++++.... +...+++|+..|.-.||++.|+.++......... |..+...+..+....|++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCCh
Confidence 99999999999999999998887655 6778888888888889999999998888776554 777888888888888888
Q ss_pred HHHHHHHHHHH
Q 038852 298 KEAMQSYKSLM 308 (851)
Q Consensus 298 ~~A~~l~~~~~ 308 (851)
++|.++...-+
T Consensus 219 ~~A~~i~~~e~ 229 (257)
T COG5010 219 REAEDIAVQEL 229 (257)
T ss_pred HHHHhhccccc
Confidence 88887765543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.6e-07 Score=89.73 Aligned_cols=121 Identities=13% Similarity=0.160 Sum_probs=83.1
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCC--HHH
Q 038852 188 EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF-LNLGN--LEK 264 (851)
Q Consensus 188 ~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~-~~~g~--~~~ 264 (851)
.++.++++..+++.++.++. |...|..|+.+|...|++++|+..|+++++.... +..++..++.++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~--~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ--NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHH
Confidence 55666777777777777655 6677777777777777777777777777776655 666777777653 55565 477
Q ss_pred HHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 038852 265 ANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF 312 (851)
Q Consensus 265 A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 312 (851)
|.++++++++.+.. +..++..++..+.+.|++++|+..|+++++...
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 77777777776665 566666666666666666666666666666554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.4e-06 Score=84.60 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=80.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHH
Q 038852 323 LEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNII 402 (851)
Q Consensus 323 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li 402 (851)
+..|++.+++++|++..+... +.++...-..++.+..++|.|...+++|.... +..+.+-|+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~-----------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id-------ed~tLtQLA 176 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE-----------NLEAAALNVQILLKMHRFDLAEKELKKMQQID-------EDATLTQLA 176 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-------hHHHHHHHH
Confidence 445556666666666555411 23333333444555566666666666665432 334444444
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHc
Q 038852 403 ARYCE----NEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITK 478 (851)
Q Consensus 403 ~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~ 478 (851)
.++.+ .+.+.+|.-+|++|-++ ..|+..+.+.++.++...|++++|..+++++++.+.+......|.+..+....
T Consensus 177 ~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 177 QAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLG 255 (299)
T ss_pred HHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence 44433 34466666677766653 45566666666666666777777777777776665554444444333333333
Q ss_pred CCHHHHHHHHHHHhh
Q 038852 479 GKVAECAPILTKMGE 493 (851)
Q Consensus 479 g~~~~A~~ll~~m~~ 493 (851)
.+.+-..+.+..++.
T Consensus 256 kd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 256 KDAEVTERNLSQLKL 270 (299)
T ss_pred CChHHHHHHHHHHHh
Confidence 333333444444443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.00039 Score=74.08 Aligned_cols=440 Identities=11% Similarity=0.073 Sum_probs=242.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 038852 112 QSLIRAGDLDAASYLARQAVFSRIRP-----TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYC 186 (851)
Q Consensus 112 ~~l~~~g~~~~A~~l~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~ 186 (851)
-.+-+.+++.+|..+|.++.+..-.. .....+.++++|. .++.+.-...+.+..+..|..+-...+..| .+.
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~~L--~~Y 90 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFKAL--VAY 90 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHHHH--HHH
Confidence 34668899999999999987654221 1344567777776 345666666666654544433222222222 345
Q ss_pred HcCChHHHHHHHHHHHHhCC-CC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CCHHHH
Q 038852 187 DEGKVDEGMNVFRRIIETAP-VG------------PSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG----ADSLVY 249 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~-~~------------p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~----pd~~~~ 249 (851)
+.+++++|++.|....+.-. .. .|...=+..+.+++..|++.++..++++++.+-++ -+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 78999999998887655411 11 11122355678899999999999999988775433 677888
Q ss_pred HHHHHHHHhc--------CC-------HHHHHHHHHHHHhc------CCccchhhHHHHHHHHHHcC--CHHHHHHHHHH
Q 038852 250 NNLISGFLNL--------GN-------LEKANELFDELKQR------CLVYDGVVNATFMEWWFNQG--KDKEAMQSYKS 306 (851)
Q Consensus 250 ~~Li~~~~~~--------g~-------~~~A~~~~~~~~~~------~~~~d~~~~~~li~~~~~~g--~~~~A~~l~~~ 306 (851)
+.++-++.+. .. ++.+.-+.++|... .+.|.......++...+-.- +..--+.+++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 8755554432 11 12222222222221 12233333444443333221 11222233333
Q ss_pred HHHhcCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccC
Q 038852 307 LMERNFRMTP-ATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTH 385 (851)
Q Consensus 307 ~~~~~~~~~~-~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 385 (851)
..+.-+.|+- .+...|+..+.. +.+++..+.+.+....+.+ ....-..+|..++....+.++..+|..++.-+...
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~-Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEK-LKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 3333333332 122333333333 4555555554443321110 00002457788888889999999998888776554
Q ss_pred CCCCCCccC-HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHH-HH---HHHHHHHHHcCC-HHHHHHHHHH
Q 038852 386 PKSKPFAMD-VAGYNNIIARYCE----NEMLEEAEKLLREISTKSLSPDVT-TF---RTLIDAYLKVER-IDDALELFNR 455 (851)
Q Consensus 386 ~~~~~~~~d-~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~-~~---~~Ll~~~~~~g~-~~~A~~~~~~ 455 (851)
.+...+.-. ..+-..+.+..+. .-+..+-+.++++....++ |.. .. ..-+.-+.+.|. -++|+++++.
T Consensus 328 dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 328 DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 443211000 0111122233331 1233445566666665433 321 11 222334556666 7889999999
Q ss_pred HHHcCCccchhHHHHH----HHHHHH---cCCHHHHHHHHHHHhhCCCCC----CHHHHHHHHHH--HHhcCChHHHHHH
Q 038852 456 MVESGLRVVVSFGTKV----FNELIT---KGKVAECAPILTKMGEKDPKP----DFLIYDVVVRG--LCNEGLFDMSKDI 522 (851)
Q Consensus 456 m~~~~~~~~~~~~~~L----~~~~~~---~g~~~~A~~ll~~m~~~~~~p----d~~~~~~ll~a--~~~~g~~~~A~~~ 522 (851)
++..... +...-+.+ -..|.. ...+.+-+++-+-+.+.|+.| +...-+.|.+| +...|++.++.-+
T Consensus 406 il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 406 ILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 8875322 22222212 122222 233444444444455566654 34455666665 4678999999887
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 038852 523 VDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADR 562 (851)
Q Consensus 523 ~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~ 562 (851)
-..+.+ +.|++.++..++-++....+++||.+++.++.
T Consensus 485 s~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 485 SSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 777766 56899999999999999999999999999863
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.3e-07 Score=96.21 Aligned_cols=297 Identities=13% Similarity=0.062 Sum_probs=163.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCCCHHHHHHH
Q 038852 146 IAAMYRAKRYDDAVALFKYFFDQADIVPN----IVSYNNLINTYCDEGKVDEGMNVFRRIIET----APVGPSSNTYRHL 217 (851)
Q Consensus 146 i~~~~~~g~~~~A~~l~~~~~~~~~~~pd----~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~----~~~~p~~~~~~~L 217 (851)
..-+++.|++...+.+|+.++.... .| ..+|.-|.++|.-.+||++|+++...=+.. +...-...+...|
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGT--eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGT--EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcc--hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 4456778888888888888766422 12 234556666666777777777654321110 1000122344456
Q ss_pred HHHHHHcCCHHHHHHHHHHH----HhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHH
Q 038852 218 TKGFVDAGRIGEAVDLLRDM----LSRQLG-ADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWF 292 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m----~~~g~~-pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~ 292 (851)
...+.-.|.|++|+-+..+- .+.|-+ .....+..|+..|...|+.-....- .+.+-. +..+-
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p----ee~g~f-~~ev~-------- 168 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP----EEKGAF-NAEVT-------- 168 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh----hhcccc-cHHHH--------
Confidence 66666667777776554332 222211 1224455566666555532110000 000000 00000
Q ss_pred HcCCHHHHHHHHHHHHHh----cCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHH
Q 038852 293 NQGKDKEAMQSYKSLMER----NFR-MTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECF 367 (851)
Q Consensus 293 ~~g~~~~A~~l~~~~~~~----~~~-~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~ 367 (851)
..++.|.++|.+-++. +-. .--..|..|.+.|.-.|+++.|+...+.-+.....-........++..|+.++.
T Consensus 169 --~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 169 --SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI 246 (639)
T ss_pred --HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence 0122333333332211 000 011456677777888899999988776544311110000113457888999999
Q ss_pred HcCChHHHHHHHHHhccCCCCC-CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHH
Q 038852 368 KHGKFSEAIETFKKAGTHPKSK-PFAMDVAGYNNIIARYCENEMLEEAEKLLREISTK-----SLSPDVTTFRTLIDAYL 441 (851)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~~~~~-~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~pd~~~~~~Ll~~~~ 441 (851)
-.|+++.|.+.|+......... .-.....+...|...|.-..++++|+.++.+-+.. ...-....+.+|+.+|.
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999988753211000 01114556677888888888999999888764321 11124567888999999
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 038852 442 KVERIDDALELFNRMVES 459 (851)
Q Consensus 442 ~~g~~~~A~~~~~~m~~~ 459 (851)
..|..++|+.+.+..++.
T Consensus 327 alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 327 ALGEHRKALYFAELHLRS 344 (639)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 999999999888777654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.4e-07 Score=88.43 Aligned_cols=160 Identities=17% Similarity=0.147 Sum_probs=137.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038852 179 NNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN 258 (851)
Q Consensus 179 ~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~ 258 (851)
..+...+...|+-+.+..+...+....+. |......+++..++.|++.+|+..|+++...... |..+|+.++.+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~--d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPK--DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcc--cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHH
Confidence 66777888889999999888887665544 7777778999999999999999999999988665 99999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 038852 259 LGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQAL 338 (851)
Q Consensus 259 ~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l 338 (851)
.|+++.|...|.+.++.... +..+++.+...|.-.|+++.|..++......... |..+-..|..+....|++++|.++
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 99999999999999988766 7788899999999999999999999998877543 445666788888999999999988
Q ss_pred HHHHH
Q 038852 339 FEQML 343 (851)
Q Consensus 339 ~~~m~ 343 (851)
...-+
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 76544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00014 Score=76.89 Aligned_cols=410 Identities=10% Similarity=0.053 Sum_probs=206.2
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 038852 136 RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYR 215 (851)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~ 215 (851)
+.|..+|..||..|...+.+++..++++.|..-..+ -..+|..-+.+-....++.....+|.+++... . +.+.|.
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~--~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-l--~ldLW~ 113 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPI--MEHAWRLYMSGELARKDFRSVESLFGRCLKKS-L--NLDLWM 113 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCcc--ccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-c--cHhHHH
Confidence 457788888888888888888888888888543333 23457777776677788888888888887653 3 566777
Q ss_pred HHHHHHHHcCCH------HHHHHHHHHHHh-cCCCC-CHHHHHHHHHHH---HhcC------CHHHHHHHHHHHHhcCCc
Q 038852 216 HLTKGFVDAGRI------GEAVDLLRDMLS-RQLGA-DSLVYNNLISGF---LNLG------NLEKANELFDELKQRCLV 278 (851)
Q Consensus 216 ~Li~~~~~~g~~------~~A~~l~~~m~~-~g~~p-d~~~~~~Li~~~---~~~g------~~~~A~~~~~~~~~~~~~ 278 (851)
..+....+.+.. ....+.|+-.+. .++.| ....|+..+..+ -..| ++|..++.|.+|+..-+.
T Consensus 114 lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~ 193 (660)
T COG5107 114 LYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMG 193 (660)
T ss_pred HHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccc
Confidence 766655543321 112223332222 22222 222343333322 2233 344555566665543221
Q ss_pred cchhhHHHHH------H-----HHHH--cCCHHHHHHHHHHHHHh--cCC----CCHHH-----------HHHHHHHHHh
Q 038852 279 YDGVVNATFM------E-----WWFN--QGKDKEAMQSYKSLMER--NFR----MTPAT-----------CNTLLEVLLK 328 (851)
Q Consensus 279 ~d~~~~~~li------~-----~~~~--~g~~~~A~~l~~~~~~~--~~~----~~~~~-----------~~~Li~~~~~ 328 (851)
--...|...- + -+.. .-.+..|...++++... |.+ .+..+ |...|+.-..
T Consensus 194 nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~e 273 (660)
T COG5107 194 NLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEME 273 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhc
Confidence 1111111110 0 0000 11233445555544321 111 01111 2222222111
Q ss_pred CC-----C-H-HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHH
Q 038852 329 HE-----K-K-EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNI 401 (851)
Q Consensus 329 ~g-----~-~-~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~l 401 (851)
.| + . ....-+|+.++.--. ....+|......+...++-..|+...++.....+. .. ..+
T Consensus 274 n~l~L~~~~~~qRi~y~~~q~~~y~~------~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps------L~--~~l 339 (660)
T COG5107 274 NGLKLGGRPHEQRIHYIHNQILDYFY------YAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS------LT--MFL 339 (660)
T ss_pred CCcccCCCcHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc------hh--eeH
Confidence 11 1 1 112223333332111 13445555555555666666666665554332221 00 011
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh--------------CCC---------------CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 038852 402 IARYCENEMLEEAEKLLREIST--------------KSL---------------SPDVTTFRTLIDAYLKVERIDDALEL 452 (851)
Q Consensus 402 i~~~~~~g~~~~A~~l~~~m~~--------------~g~---------------~pd~~~~~~Ll~~~~~~g~~~~A~~~ 452 (851)
...|.-..+-++....|++... .+. .--..+|..+++...+..-++.|..+
T Consensus 340 se~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~ 419 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKL 419 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 1112112222222221211100 000 01134566677777777778888888
Q ss_pred HHHHHHcC-CccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038852 453 FNRMVESG-LRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIY-DVVVRGLCNEGLFDMSKDIVDQMMKYG 530 (851)
Q Consensus 453 ~~~m~~~~-~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~-~~ll~a~~~~g~~~~A~~~~~~m~~~g 530 (851)
|.++.+.+ ....+.++++++. |...|+...|.++|+--+.. -+|...| ...+.-+...++-+.|..+|+..+.+-
T Consensus 420 F~k~rk~~~~~h~vyi~~A~~E-~~~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~ 496 (660)
T COG5107 420 FIKLRKEGIVGHHVYIYCAFIE-YYATGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVERL 496 (660)
T ss_pred HHHHhccCCCCcceeeeHHHHH-HHhcCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHH
Confidence 88888877 3445555554443 44567888888888775554 2233333 345566677788888888888665421
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCC
Q 038852 531 -VGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAA 567 (851)
Q Consensus 531 -~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~ 567 (851)
-.--..+|..+++.-.+-|++..+..+-+++...+|.
T Consensus 497 ~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 497 EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 0122567777888888888888887777777776653
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.9e-07 Score=85.29 Aligned_cols=123 Identities=13% Similarity=0.065 Sum_probs=83.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 125 YLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
.++++++... |+ .+..+...+...|++++|++.|+.++.... .+...|..++.++...|++++|+..|+++++.
T Consensus 14 ~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQP--WSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455555332 22 244566677778888888888887766433 35667777777888888888888888888777
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 205 APVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 205 ~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
++. +..++..++.++...|++++|++.|+++++.... +...|.....++
T Consensus 88 ~p~--~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DAS--HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWSEIRQNAQ 136 (144)
T ss_pred CCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 655 6667777888888888888888888887776544 555555444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.6e-07 Score=84.88 Aligned_cols=117 Identities=12% Similarity=0.060 Sum_probs=88.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 159 VALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDML 238 (851)
Q Consensus 159 ~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~ 238 (851)
..+|++.++. +...+..++.++...|++++|+..|+.++..++. +..+|..++.++...|++++|+..|++++
T Consensus 13 ~~~~~~al~~-----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLSV-----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPW--SWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHHc-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456666542 2223556777788888888888888888887766 77788888888888888888888888888
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhH
Q 038852 239 SRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVN 284 (851)
Q Consensus 239 ~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~ 284 (851)
+.+.. +..++..++.++...|++++|+..|+.+++.... +...+
T Consensus 86 ~l~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~ 129 (144)
T PRK15359 86 MLDAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWS 129 (144)
T ss_pred hcCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 87655 7788888888888888888888888888876554 33333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.2e-06 Score=96.87 Aligned_cols=135 Identities=14% Similarity=0.091 Sum_probs=119.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038852 173 PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNL 252 (851)
Q Consensus 173 pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L 252 (851)
.++..+..|+.+....|++++|+.+++.+++..|. +...+..++.++.+.+++++|+..+++++..... +......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd--~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD--SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 46888999999999999999999999999998877 7788889999999999999999999999998776 78888899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 038852 253 ISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN 311 (851)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~ 311 (851)
+.++.+.|++++|+++|++++..+.. +..++..+..++.+.|+.++|...|+++++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999985443 67888888899999999999999999888764
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-06 Score=86.20 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHH-HHHcCC--
Q 038852 295 GKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNE-CFKHGK-- 371 (851)
Q Consensus 295 g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~-~~~~g~-- 371 (851)
++.++++..++..++.++ .+...|..|+..|...|++++|+..|+++++.. |+ +..++..++.+ |...|+
T Consensus 53 ~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~----~~~~~~~lA~aL~~~~g~~~ 125 (198)
T PRK10370 53 QTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GE----NAELYAALATVLYYQAGQHM 125 (198)
T ss_pred hhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHhcCCCC
Confidence 444455555555554443 234455555555555566666666655555532 22 45555555554 244444
Q ss_pred hHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038852 372 FSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTK 424 (851)
Q Consensus 372 ~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 424 (851)
.++|.++|+++....+. +..++..++..+.+.|++++|+..|+++++.
T Consensus 126 ~~~A~~~l~~al~~dP~-----~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 126 TPQTREMIDKALALDAN-----EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred cHHHHHHHHHHHHhCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35555555555554444 4455555555555555555555555555543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.6e-06 Score=82.64 Aligned_cols=250 Identities=17% Similarity=0.179 Sum_probs=163.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCH
Q 038852 253 ISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKK 332 (851)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~ 332 (851)
++-+.-.|++..++..-....... -+......+.+.|...|.+...+.-.+.. . .+....+..+...+..-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~~~---~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIKEG---K-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccccccc---c-CChHHHHHHHHHHhhCcchh
Confidence 455566688888877666554432 24455555666777777765544333222 1 22223444344444444554
Q ss_pred HHHH-HHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCH
Q 038852 333 EEAQ-ALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEML 411 (851)
Q Consensus 333 ~~A~-~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~ 411 (851)
++-+ ++.+.+....... +......-+..|++.|++++|++.++... +......-+.++.+..++
T Consensus 89 ~~~~~~l~E~~a~~~~~s-----n~i~~l~aa~i~~~~~~~deAl~~~~~~~----------~lE~~Al~VqI~lk~~r~ 153 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGS-----NLIDLLLAAIIYMHDGDFDEALKALHLGE----------NLEAAALNVQILLKMHRF 153 (299)
T ss_pred HHHHHHHHHHHHhhccch-----hHHHHHHhhHHhhcCCChHHHHHHHhccc----------hHHHHHHHHHHHHHHHHH
Confidence 4444 4445555443332 34455566778999999999999988742 444444445567788899
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHH
Q 038852 412 EEAEKLLREISTKSLSPDVTTFRTLIDAYLK----VERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPI 487 (851)
Q Consensus 412 ~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~l 487 (851)
|-|++.+++|... -+..|.+-|..++.+ .+.+.+|.-+|+++.++- .++..+.+-.+.++...|++++|..+
T Consensus 154 d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 154 DLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred HHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHH
Confidence 9999999999864 256677777777665 456889999999998753 45556666677888899999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 038852 488 LTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMS-KDIVDQMMK 528 (851)
Q Consensus 488 l~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A-~~~~~~m~~ 528 (851)
++.++++..+ |..++..++.+-...|.-.++ .+.+..++.
T Consensus 230 L~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 230 LEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 9999988766 677777777776677765444 444555544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.5e-06 Score=80.55 Aligned_cols=189 Identities=16% Similarity=0.172 Sum_probs=135.6
Q ss_pred CCHHHHHHHHHHHHHcC----CCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChH
Q 038852 118 GDLDAASYLARQAVFSR----IRPTV-FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVD 192 (851)
Q Consensus 118 g~~~~A~~l~~~~~~~~----~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~ 192 (851)
.+.++.++++..++... ..++. .+|..++-+....|+.+.|..+++.+.++..-.+.+.-+.+ ..+-..|.++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lka--m~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKA--MLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHH--HHHHHhhchh
Confidence 35666777776665432 23333 34555666667788999999999888665432222333322 2356678899
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 193 EGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDEL 272 (851)
Q Consensus 193 ~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~ 272 (851)
+|+++|+.+++.++. |..++..-+.+....|+-.+|++-+.+.++. +.-|...|.-|...|...|++++|.-+++++
T Consensus 104 ~A~e~y~~lL~ddpt--~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPT--DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccCcc--hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999999888765 7778877777777888888888888888887 4448899999999999999999999999988
Q ss_pred HhcCCccchhhHHHHHHHHHHcC---CHHHHHHHHHHHHHhcC
Q 038852 273 KQRCLVYDGVVNATFMEWWFNQG---KDKEAMQSYKSLMERNF 312 (851)
Q Consensus 273 ~~~~~~~d~~~~~~li~~~~~~g---~~~~A~~l~~~~~~~~~ 312 (851)
+-..+. +...+..+.+.+.-.| +++.|.++|...++.+.
T Consensus 181 ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 876655 6666777777665554 55667788888877765
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.2e-06 Score=97.50 Aligned_cols=144 Identities=10% Similarity=0.093 Sum_probs=103.8
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 038852 280 DGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTF 359 (851)
Q Consensus 280 d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~ 359 (851)
+...+..|+.+....|.+++|+.+++.+++..+. +...+..++.++.+.+++++|+..+++++... |+ +....
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~----~~~~~ 157 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SS----SAREI 157 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CC----CHHHH
Confidence 5777777788888888888888888888777653 33556667777888888888888888887743 33 67777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 360 NIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTL 436 (851)
Q Consensus 360 ~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L 436 (851)
+.++.++.+.|++++|+++|+++....+. +..++..+..++.+.|+.++|...|++.++. ..+....|+.+
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-----~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPE-----FENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 78888888888888888888887754333 5677777788888888888888888877764 23344444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-05 Score=86.23 Aligned_cols=183 Identities=15% Similarity=0.111 Sum_probs=127.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038852 355 NSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFR 434 (851)
Q Consensus 355 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~ 434 (851)
+...+...+.+......-..+..++.+..+ +. ....+......+...|.+++|+..++.+++. .+-|...+.
T Consensus 273 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~-----~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~ 344 (484)
T COG4783 273 DFQLARARIRAKYEALPNQQAADLLAKRSK--RG-----GLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLE 344 (484)
T ss_pred cHHHHHHHHHHHhccccccchHHHHHHHhC--cc-----chHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHH
Confidence 444555555544444443344444333322 11 3334444555666788889999999888775 344677777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 038852 435 TLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEG 514 (851)
Q Consensus 435 ~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g 514 (851)
..++.+.+.++.++|.+.|++++...+......++ +..+|.+.|+..+|+.++++....... |...|..|..+|...|
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~-~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g 422 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALALDPNSPLLQLN-LAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELG 422 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHH-HHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhC
Confidence 88888889999999999999988876554444443 788888999999999988888776544 7888899999999888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcC
Q 038852 515 LFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGY 565 (851)
Q Consensus 515 ~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~ 565 (851)
+..++.....+ .|...|++++|+.++...++.+
T Consensus 423 ~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 423 NRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred chHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhc
Confidence 88887776655 4556788888888887776654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.1e-06 Score=88.18 Aligned_cols=144 Identities=18% Similarity=0.214 Sum_probs=88.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 038852 144 AIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD 223 (851)
Q Consensus 144 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~ 223 (851)
.....+...|.+++|+..++.+++.. ..|...+...+..+.+.++.++|.+.|++++...|. ....+..++.+|.+
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~--~~~l~~~~a~all~ 386 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN--SPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHh
Confidence 33334556666677776666665532 245555666666666667777777777766665544 34556666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHH
Q 038852 224 AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQS 303 (851)
Q Consensus 224 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l 303 (851)
.|++.+|+.++++....... |...|..|..+|...|+..+|...+.+. |...|+++.|+..
T Consensus 387 ~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~ 447 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIF 447 (484)
T ss_pred cCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHH
Confidence 77777777666666666444 6666666777776666666665544332 4445666666666
Q ss_pred HHHHHHh
Q 038852 304 YKSLMER 310 (851)
Q Consensus 304 ~~~~~~~ 310 (851)
+..+.+.
T Consensus 448 l~~A~~~ 454 (484)
T COG4783 448 LMRASQQ 454 (484)
T ss_pred HHHHHHh
Confidence 6655544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.3e-05 Score=73.41 Aligned_cols=163 Identities=18% Similarity=0.192 Sum_probs=78.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 038852 249 YNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLK 328 (851)
Q Consensus 249 ~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~ 328 (851)
|..++.+....|+.+.|..+++.+...-.. +..+...-+..+-..|.+++|+++|+.+++.++ .|.+++..-+.+.-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp-t~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYKEAIEYYESLLEDDP-TDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchhhHHHHHHHHhccCc-chhHHHHHHHHHHHH
Confidence 344444455555555555555555444322 222222222334445555555555555555542 233444444444444
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhc
Q 038852 329 HEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCEN 408 (851)
Q Consensus 329 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~ 408 (851)
.|+--+|++-+.+.++.-.. |.++|..+...|...|++++|.-+++++.-..+. +...+..+.+.+.-.
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~------D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-----n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMN------DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-----NPLYFQRLAEVLYTQ 201 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHH
Confidence 55555555555555553222 5556666666666666666666666555444333 333344444443332
Q ss_pred C---CHHHHHHHHHHHHhC
Q 038852 409 E---MLEEAEKLLREISTK 424 (851)
Q Consensus 409 g---~~~~A~~l~~~m~~~ 424 (851)
| +++-|.++|.+.++.
T Consensus 202 gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 202 GGAENLELARKYYERALKL 220 (289)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 2 334455555555543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0012 Score=70.17 Aligned_cols=408 Identities=13% Similarity=0.138 Sum_probs=232.1
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
.+++.++.-|-..+..++.+++++++..- ..--..+|...+..-...+++.....+|.+.+.+. -+...|...+..
T Consensus 43 ~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~---l~ldLW~lYl~Y 118 (660)
T COG5107 43 LSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS---LNLDLWMLYLEY 118 (660)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh---ccHhHHHHHHHH
Confidence 57899999999999999999999998732 23345678888888888899999999999987642 356777777764
Q ss_pred HHHcCCh------HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH---HcC------CHHHHHHHHHHHHhcCCCCCHHH
Q 038852 185 YCDEGKV------DEGMNVFRRIIETAPVGP-SSNTYRHLTKGFV---DAG------RIGEAVDLLRDMLSRQLGADSLV 248 (851)
Q Consensus 185 ~~~~g~~------~~A~~l~~~~~~~~~~~p-~~~~~~~Li~~~~---~~g------~~~~A~~l~~~m~~~g~~pd~~~ 248 (851)
..+.+.. ....+.|+-.+....+.| ....|+..+..+. ..| +++...+.|.+|+..-+.--...
T Consensus 119 IRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nlekl 198 (660)
T COG5107 119 IRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKL 198 (660)
T ss_pred HHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHH
Confidence 4443311 112333444443323322 2334555444332 233 34556666777665432211112
Q ss_pred HHH------HHHHH---HhcC----CHHHHHHHHHHHHh--cCCcc----chhh-----------HHHHHHHHHHcC---
Q 038852 249 YNN------LISGF---LNLG----NLEKANELFDELKQ--RCLVY----DGVV-----------NATFMEWWFNQG--- 295 (851)
Q Consensus 249 ~~~------Li~~~---~~~g----~~~~A~~~~~~~~~--~~~~~----d~~~-----------~~~li~~~~~~g--- 295 (851)
|.. -+.-. --.| -+-.|...+.++.. .|... +..+ |..+|+.-...|
T Consensus 199 W~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L 278 (660)
T COG5107 199 WKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKL 278 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCccc
Confidence 211 11111 0111 13445555555432 12110 1111 222222221111
Q ss_pred --C-H-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCC
Q 038852 296 --K-D-KEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGK 371 (851)
Q Consensus 296 --~-~-~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~ 371 (851)
+ . ....-+|+.++.. +.....+|......+...++-..|+...++.... .| ..-..+...|.-..+
T Consensus 279 ~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sp-------sL~~~lse~yel~nd 348 (660)
T COG5107 279 GGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SP-------SLTMFLSEYYELVND 348 (660)
T ss_pred CCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CC-------chheeHHHHHhhccc
Confidence 1 1 1111222332221 1122345555555556667777777766655432 12 111222223333333
Q ss_pred hHHHHHHHHHhc----------cCCCCCC----C-----------ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 038852 372 FSEAIETFKKAG----------THPKSKP----F-----------AMDVAGYNNIIARYCENEMLEEAEKLLREISTKS- 425 (851)
Q Consensus 372 ~~~A~~~~~~~~----------~~~~~~~----~-----------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 425 (851)
.++...+|+++. +.....+ + .--..+|.+++....+..-++.|..+|-++.+.+
T Consensus 349 ~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~ 428 (660)
T COG5107 349 EEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI 428 (660)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Confidence 333322222210 0000000 0 0024557778888888888999999999999988
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC--HHHH
Q 038852 426 LSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPD--FLIY 503 (851)
Q Consensus 426 ~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd--~~~~ 503 (851)
+.+++.++++++..++ .|+...|.++|+--+..-. ++..+....+..++..++-+.|..+|++.+++ +.-+ ..+|
T Consensus 429 ~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~-d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy 505 (660)
T COG5107 429 VGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFP-DSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIY 505 (660)
T ss_pred CCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCC-CchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHH
Confidence 6677888999887665 6788999999988776543 33444455778888999999999999976654 2212 4578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc
Q 038852 504 DVVVRGLCNEGLFDMSKDIVDQMMKY 529 (851)
Q Consensus 504 ~~ll~a~~~~g~~~~A~~~~~~m~~~ 529 (851)
..+|+--.+-|+...+..+-+++.+.
T Consensus 506 ~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 506 DKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 88888888899999988888888763
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.5e-05 Score=81.80 Aligned_cols=325 Identities=16% Similarity=0.100 Sum_probs=164.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 038852 173 PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGP--------SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA 244 (851)
Q Consensus 173 pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p--------~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p 244 (851)
|....|..|+......-+++.|+..|-++..-.+++. +...-. +..-.--|++++|.++|-+|-+++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~--aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQR--AEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHh--HhHhhhhcchhHhhhhhhccchhh---
Confidence 5666677776666666666666666655433222210 000011 111122367777777776665542
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 038852 245 DSLVYNNLISGFLNLGNLEKANELFDELKQR-CLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLL 323 (851)
Q Consensus 245 d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~-~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li 323 (851)
..+..+.+.||+-....+++.--.. +-..-...++.+.+.++...+|++|.++|...... ..++
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ 829 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI 829 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence 2455666667776666655431110 00011345666777777777777777777654321 2356
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHH
Q 038852 324 EVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIA 403 (851)
Q Consensus 324 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~ 403 (851)
++|.+...+++.+.+.+.+-+ +....-.++.++...|.-++|.+.|-+... -...+.
T Consensus 830 ecly~le~f~~LE~la~~Lpe----------~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-------------pkaAv~ 886 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPE----------DSELLPVMADMFTSVGMCDQAVEAYLRRSL-------------PKAAVH 886 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCc----------ccchHHHHHHHHHhhchHHHHHHHHHhccC-------------cHHHHH
Confidence 666666666665555444332 455666777777777777777777655421 112345
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHHcC----Cccc-
Q 038852 404 RYCENEMLEEAEKLLREISTKSLSPDVTTF--------------RTLIDAYLKVERIDDALELFNRMVESG----LRVV- 464 (851)
Q Consensus 404 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~--------------~~Ll~~~~~~g~~~~A~~~~~~m~~~~----~~~~- 464 (851)
.|...+.+.+|.++-.+..- |.+.++ ..-|..+.+.|+.-+|.+++.+|.+.. ..+.
T Consensus 887 tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr 962 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLR 962 (1189)
T ss_pred HHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHH
Confidence 56666667676666554321 111111 112344555666556666666665431 1110
Q ss_pred -hhHH---HHHHHHH----------HHcCCHHHHHHHHHHHhhC-------CCCCCHHHHHH--HHHHHHhcCChHHHHH
Q 038852 465 -VSFG---TKVFNEL----------ITKGKVAECAPILTKMGEK-------DPKPDFLIYDV--VVRGLCNEGLFDMSKD 521 (851)
Q Consensus 465 -~~~~---~~L~~~~----------~~~g~~~~A~~ll~~m~~~-------~~~pd~~~~~~--ll~a~~~~g~~~~A~~ 521 (851)
...| ..|+.-+ .+.|..++|..+++...-. +.---...|.. |..--...|.++.|+.
T Consensus 963 ~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~ 1042 (1189)
T KOG2041|consen 963 LKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQ 1042 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHH
Confidence 0011 0111111 1356666666655543211 00011223433 3344456788888887
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHH
Q 038852 522 IVDQMMKY-GVGITPALQDFVRET 544 (851)
Q Consensus 522 ~~~~m~~~-g~~~~~~~~~~L~~~ 544 (851)
.--.+.++ ++-+..++|..|+.+
T Consensus 1043 Tal~L~DYEd~lpP~eiySllALa 1066 (1189)
T KOG2041|consen 1043 TALILSDYEDFLPPAEIYSLLALA 1066 (1189)
T ss_pred HHhhhccHhhcCCHHHHHHHHHHH
Confidence 76665543 344556666665443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00058 Score=71.32 Aligned_cols=286 Identities=13% Similarity=0.114 Sum_probs=137.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCChhHHHHHHHHHHHcCCCCCCHHH--HHHHHHHHHHcCCh
Q 038852 116 RAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMY--RAKRYDDAVALFKYFFDQADIVPNIVS--YNNLINTYCDEGKV 191 (851)
Q Consensus 116 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~l~~~~~~~~~~~pd~~~--~~~Li~~~~~~g~~ 191 (851)
-.||-..|.++-.+..+. +.-|-.-+..|+.+-. -.|++++|.+-|+.|++. |.... +..|.-..-+.|+.
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccH
Confidence 345666666555543311 2233333334443332 357777777777776542 22111 11222222345666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCHHH--HHHHHHHHHhcCCHHHHHHH
Q 038852 192 DEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ-LGADSLV--YNNLISGFLNLGNLEKANEL 268 (851)
Q Consensus 192 ~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~--~~~Li~~~~~~g~~~~A~~~ 268 (851)
+.|..+-++.-+..+. -...+..++...+..|+++.|+++++.-+... +.+|..- -..|+.+-.
T Consensus 171 eaAr~yAe~Aa~~Ap~--l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA----------- 237 (531)
T COG3898 171 EAARHYAERAAEKAPQ--LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA----------- 237 (531)
T ss_pred HHHHHHHHHHHhhccC--CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH-----------
Confidence 6666666666665544 34466666666777777777777766554432 1112210 011111100
Q ss_pred HHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 038852 269 FDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQP 348 (851)
Q Consensus 269 ~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~ 348 (851)
+-.-..+...|.+.-.+..+.....-+ .-..-..+|.+.|+..++-.+++.+-+....
T Consensus 238 ---------------------~s~ldadp~~Ar~~A~~a~KL~pdlvP-aav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 238 ---------------------MSLLDADPASARDDALEANKLAPDLVP-AAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred ---------------------HHHhcCChHHHHHHHHHHhhcCCccch-HHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 000011223333333333332221111 1122345566666666666666666665444
Q ss_pred CCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh---ccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038852 349 PNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA---GTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKS 425 (851)
Q Consensus 349 p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 425 (851)
|+ +...|.+..--|.++.-++++ ....++ +.++...+..+-...|++..|..--+.+..
T Consensus 296 P~-----------ia~lY~~ar~gdta~dRlkRa~~L~slk~n-----naes~~~va~aAlda~e~~~ARa~Aeaa~r-- 357 (531)
T COG3898 296 PD-----------IALLYVRARSGDTALDRLKRAKKLESLKPN-----NAESSLAVAEAALDAGEFSAARAKAEAAAR-- 357 (531)
T ss_pred hH-----------HHHHHHHhcCCCcHHHHHHHHHHHHhcCcc-----chHHHHHHHHHHHhccchHHHHHHHHHHhh--
Confidence 42 122222222222233222222 111111 555566666666677777766666555553
Q ss_pred CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHc
Q 038852 426 LSPDVTTFRTLIDAYLK-VERIDDALELFNRMVES 459 (851)
Q Consensus 426 ~~pd~~~~~~Ll~~~~~-~g~~~~A~~~~~~m~~~ 459 (851)
..|....|..|.+.-.. .|+-.++..++.+.++.
T Consensus 358 ~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 358 EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 35666667666666544 37777777777777764
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.3e-06 Score=86.16 Aligned_cols=222 Identities=15% Similarity=0.220 Sum_probs=117.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CC-CCHHHHHHHHHHHHHcCCHHH
Q 038852 154 RYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAP---VG-PSSNTYRHLTKGFVDAGRIGE 229 (851)
Q Consensus 154 ~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~---~~-p~~~~~~~Li~~~~~~g~~~~ 229 (851)
++++|..+|+++ +..|...|++++|.+.|.++.+..- .. .-...|...+.+|.+. ++++
T Consensus 30 ~~e~Aa~~y~~A----------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~ 92 (282)
T PF14938_consen 30 DYEEAADLYEKA----------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDE 92 (282)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHH
T ss_pred CHHHHHHHHHHH----------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHH
Confidence 666776666654 3456667777777777776643210 00 0011233333333333 5555
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 038852 230 AVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQ-GKDKEAMQSYKSLM 308 (851)
Q Consensus 230 A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~-g~~~~A~~l~~~~~ 308 (851)
|+++|+++ +..|...|++..|-+++.++- .+|... |++++|+++|+++.
T Consensus 93 Ai~~~~~A---------------~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~ 142 (282)
T PF14938_consen 93 AIECYEKA---------------IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAA 142 (282)
T ss_dssp HHHHHHHH---------------HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHH
T ss_pred HHHHHHHH---------------HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHH
Confidence 55555443 344555566666555554433 334455 66777777776665
Q ss_pred HhcCCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCH-HHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 309 ERNFRM-----TPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNS-DTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 309 ~~~~~~-----~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~-~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
+.-... -..++..++..+.+.|++++|+++|+++......-+....+. ..|...+.++...||...|.+.|++.
T Consensus 143 ~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 143 ELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 431111 113556678888899999999999998877543322111112 23445566777788888888888887
Q ss_pred ccCCCCCCCccCHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 038852 383 GTHPKSKPFAMDVAGYNNIIARYCE--NEMLEEAEKLLREIS 422 (851)
Q Consensus 383 ~~~~~~~~~~~d~~~~~~li~~~~~--~g~~~~A~~l~~~m~ 422 (851)
....+.-.-.........|+.+|-. ...+++|+.-|+.+.
T Consensus 223 ~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 223 CSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp GTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 6554332222234455556666543 234555555555443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.41 E-value=1e-05 Score=75.46 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
....++..+...|++++|++.|+++...++. +...|..++.++...|++++|+.+|+.+++.+.. +..++..++.+|
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~ 95 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPY--NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 3444555555555666666666555554433 4455555555555556666666666555555433 445555555555
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 038852 257 LNLGNLEKANELFDELKQR 275 (851)
Q Consensus 257 ~~~g~~~~A~~~~~~~~~~ 275 (851)
...|++++|+..|+++++.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5566666666655555554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00071 Score=75.10 Aligned_cols=352 Identities=11% Similarity=0.071 Sum_probs=172.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIV-SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRH 216 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~-~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~ 216 (851)
+...|..||.---...+.+.+..+++.++.+. |... .|...+..=.+.|..+.+.++|++.+..-+. ++..|..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky---Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~--SvdlW~~ 118 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY---PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPL--SVDLWLS 118 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhh--HHHHHHH
Confidence 45566666654444455566677777776543 3332 4556666666778888888888888776443 6667766
Q ss_pred HHHHHH-HcCCHHHHHHHHHHHHhc-C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHH
Q 038852 217 LTKGFV-DAGRIGEAVDLLRDMLSR-Q--LGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWF 292 (851)
Q Consensus 217 Li~~~~-~~g~~~~A~~l~~~m~~~-g--~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~ 292 (851)
....+. ..|+.+...+.|+.++.. | +. ....|...|..-...+++.....+|+++++.-. .-++....-|.
T Consensus 119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~-S~~lWdkyie~en~qks~k~v~~iyeRileiP~----~~~~~~f~~f~ 193 (577)
T KOG1258|consen 119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFL-SDPLWDKYIEFENGQKSWKRVANIYERILEIPL----HQLNRHFDRFK 193 (577)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchh-ccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh----hHhHHHHHHHH
Confidence 655444 356777777777777764 1 22 345677777777777888888888888876522 22222222111
Q ss_pred H---c------CCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCCCccCHH-----
Q 038852 293 N---Q------GKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKK-EEAQALFEQMLDNHQPPNIQAVNSD----- 357 (851)
Q Consensus 293 ~---~------g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~-~~A~~l~~~m~~~~~~p~~~~~~~~----- 357 (851)
+ . ...+++..+-....+. ......++. +......+...+....-+ ...
T Consensus 194 ~~l~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~~~v~~~~~~s~~l~----~~~~~l~~ 256 (577)
T KOG1258|consen 194 QLLNQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELEIGVKDSTDPSKSLT----EEKTILKR 256 (577)
T ss_pred HHHhcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHHHHHhhccCccchhh----HHHHHHHH
Confidence 1 1 1111111111111110 000000111 111111111110000000 000
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCC----ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038852 358 TFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPF----AMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTF 433 (851)
Q Consensus 358 ~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 433 (851)
.....-.+|.......+.+..|+.....+ -..+ ..+...|+..+..-...|+++.+..+|++..-- +..=...|
T Consensus 257 ~~~~~~~~~~~s~~~~~kr~~fE~~Ikrp-Yfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efW 334 (577)
T KOG1258|consen 257 IVSIHEKVYQKSEEEEEKRWGFEEGIKRP-YFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFW 334 (577)
T ss_pred HHHHHHHHHHhhHhHHHHHHhhhhhcccc-ccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHH
Confidence 01111112223333334444444443221 1111 224566777777777777777777777766532 11123455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHh
Q 038852 434 RTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLI-YDVVVRGLCN 512 (851)
Q Consensus 434 ~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~-~~~ll~a~~~ 512 (851)
-..+.-....|+.+-|..++.+..+.-.+....+...-.......|+++.|..+++++.+.- |+.+. -..-+....+
T Consensus 335 iky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r 412 (577)
T KOG1258|consen 335 IKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERR 412 (577)
T ss_pred HHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHH
Confidence 55555555557777777776666655443333322212222334567777777777776653 33221 1112233345
Q ss_pred cCChHHHH
Q 038852 513 EGLFDMSK 520 (851)
Q Consensus 513 ~g~~~~A~ 520 (851)
.|..+.+.
T Consensus 413 ~~~~~~~~ 420 (577)
T KOG1258|consen 413 KGNLEDAN 420 (577)
T ss_pred hcchhhhh
Confidence 56666655
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0047 Score=68.76 Aligned_cols=118 Identities=11% Similarity=0.078 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-HcCChHHHHH
Q 038852 119 DLDAASYLARQAVFSRIRPT-VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYC-DEGKVDEGMN 196 (851)
Q Consensus 119 ~~~~A~~l~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~-~~g~~~~A~~ 196 (851)
+.+.+..++..++.. .|. --.|......-.+.|..+.++++|++.+. ++...+..|...+..+. ..|+-+...+
T Consensus 60 ~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~--aip~SvdlW~~Y~~f~~n~~~d~~~lr~ 135 (577)
T KOG1258|consen 60 DVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ--AIPLSVDLWLSYLAFLKNNNGDPETLRD 135 (577)
T ss_pred HHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhccCCCHHHHHH
Confidence 345555566665533 233 34566777777789999999999999876 45566777776665444 4578888899
Q ss_pred HHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 197 VFRRIIETAPVG-PSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 197 l~~~~~~~~~~~-p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
.|+++....|.. .....|...|..-...+++.....+|+++++.
T Consensus 136 ~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 136 LFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 999998876542 23457888888888899999999999999876
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.8e-06 Score=76.30 Aligned_cols=112 Identities=14% Similarity=0.087 Sum_probs=81.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038852 197 VFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRC 276 (851)
Q Consensus 197 l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~ 276 (851)
.|+++++.++. +......++..+...|++++|++.|+++...+.. +...|..++.+|.+.|++++|..+|+.+++.+
T Consensus 5 ~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE--QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChh--hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45666665544 4556677777888888888888888888776554 67778888888888888888888888877765
Q ss_pred CccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 038852 277 LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF 312 (851)
Q Consensus 277 ~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 312 (851)
.. +...+..+..+|...|++++|+..|+.+++.+.
T Consensus 82 p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 82 PD-DPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 44 556666667777777777777777777766653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00011 Score=77.94 Aligned_cols=186 Identities=12% Similarity=0.152 Sum_probs=86.2
Q ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-C----HHHHHHHHHHHHhcCCHHH
Q 038852 190 KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA-D----SLVYNNLISGFLNLGNLEK 264 (851)
Q Consensus 190 ~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p-d----~~~~~~Li~~~~~~g~~~~ 264 (851)
++++|.++|+++ +..|...+++++|.+.|.++.+..... + ...|...+.+|.+. ++++
T Consensus 30 ~~e~Aa~~y~~A----------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~ 92 (282)
T PF14938_consen 30 DYEEAADLYEKA----------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDE 92 (282)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHH
T ss_pred CHHHHHHHHHHH----------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHH
Confidence 666666666655 334566677777777776664421110 1 12233333333333 5555
Q ss_pred HHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHH
Q 038852 265 ANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKH-EKKEEAQALFEQML 343 (851)
Q Consensus 265 A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~-g~~~~A~~l~~~m~ 343 (851)
|+++|+++.+ .|...|++..|-+++ ..++..|... |++++|+++|+++.
T Consensus 93 Ai~~~~~A~~---------------~y~~~G~~~~aA~~~---------------~~lA~~ye~~~~d~e~Ai~~Y~~A~ 142 (282)
T PF14938_consen 93 AIECYEKAIE---------------IYREAGRFSQAAKCL---------------KELAEIYEEQLGDYEKAIEYYQKAA 142 (282)
T ss_dssp HHHHHHHHHH---------------HHHHCT-HHHHHHHH---------------HHHHHHHCCTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------HHHhcCcHHHHHHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555544433 366666666665443 3355566666 77888888777776
Q ss_pred HcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCC-CccCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 344 DNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKP-FAMDVA-GYNNIIARYCENEMLEEAEKLLREI 421 (851)
Q Consensus 344 ~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~d~~-~~~~li~~~~~~g~~~~A~~l~~~m 421 (851)
+.-..-+....-..++..++.++.+.|++++|+++|+++........ ...++. .|...+.++...||...|.+.|++.
T Consensus 143 ~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 143 ELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 52111000000123445555556666666666666655543321111 111111 1222333444455555555555555
Q ss_pred H
Q 038852 422 S 422 (851)
Q Consensus 422 ~ 422 (851)
.
T Consensus 223 ~ 223 (282)
T PF14938_consen 223 C 223 (282)
T ss_dssp G
T ss_pred H
Confidence 4
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00062 Score=75.61 Aligned_cols=144 Identities=15% Similarity=0.054 Sum_probs=87.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHH------HHHHH
Q 038852 111 VQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYN------NLINT 184 (851)
Q Consensus 111 l~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~------~Li~~ 184 (851)
...++..-.+++|.+..+. .|....|..|.......-.++.|...|-+.-+-.|++---..-. --+..
T Consensus 670 ~~~Lve~vgledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei 743 (1189)
T KOG2041|consen 670 VMNLVEAVGLEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI 743 (1189)
T ss_pred HHHHHHHhchHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH
Confidence 3445555556666665543 67888999888888888888888888877644333321100000 01112
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCH
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG--ADSLVYNNLISGFLNLGNL 262 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~~~~~Li~~~~~~g~~ 262 (851)
-.--|++++|+++|-++-+++ ..|..+.+.|++-....+++.--. +.. .-...|+.++..++....|
T Consensus 744 ~~~~g~feeaek~yld~drrD----------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~W 812 (1189)
T KOG2041|consen 744 SAFYGEFEEAEKLYLDADRRD----------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEW 812 (1189)
T ss_pred hhhhcchhHhhhhhhccchhh----------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHH
Confidence 223488999999998775442 245667777888777776653211 111 1125677777777777777
Q ss_pred HHHHHHHHH
Q 038852 263 EKANELFDE 271 (851)
Q Consensus 263 ~~A~~~~~~ 271 (851)
++|.++|..
T Consensus 813 e~A~~yY~~ 821 (1189)
T KOG2041|consen 813 EEAAKYYSY 821 (1189)
T ss_pred HHHHHHHHh
Confidence 777777754
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0029 Score=66.23 Aligned_cols=289 Identities=13% Similarity=0.067 Sum_probs=155.8
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038852 188 EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKG--FVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKA 265 (851)
Q Consensus 188 ~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~--~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 265 (851)
.||-..|.++-.+..+. +.-|-..+..|+.+ -.-.|++++|.+-|+.|+.. .+.-..-+..|.-..-+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHH
Confidence 35555555555444322 11133333333332 22356666666666666542 000011111222222345566666
Q ss_pred HHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCCHH--HHHHHHHHH---HhCCCHHHHHHHH
Q 038852 266 NELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF-RMTPA--TCNTLLEVL---LKHEKKEEAQALF 339 (851)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~~~~~--~~~~Li~~~---~~~g~~~~A~~l~ 339 (851)
..+-++.-+.... -...+...++..+..|+++.|+++++.-+...+ ..+.. .-..|+.+- .-.-+...|.+.-
T Consensus 174 r~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 6555555444332 234445555556666666666666655443221 11111 111122111 1123466677666
Q ss_pred HHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 340 EQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLR 419 (851)
Q Consensus 340 ~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 419 (851)
.+..+ +.|++ .-.-..-..+|++.|++.++-.+++.+-+..+ ...++. +..+.+.|+ .+++-++
T Consensus 253 ~~a~K--L~pdl----vPaav~AAralf~d~~~rKg~~ilE~aWK~eP------HP~ia~--lY~~ar~gd--ta~dRlk 316 (531)
T COG3898 253 LEANK--LAPDL----VPAAVVAARALFRDGNLRKGSKILETAWKAEP------HPDIAL--LYVRARSGD--TALDRLK 316 (531)
T ss_pred HHHhh--cCCcc----chHHHHHHHHHHhccchhhhhhHHHHHHhcCC------ChHHHH--HHHHhcCCC--cHHHHHH
Confidence 66655 45543 22445567889999999999999999865433 333332 223344554 3444444
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH-cCCHHHHHHHHHHHhhCCC
Q 038852 420 EISTK-SLSP-DVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELIT-KGKVAECAPILTKMGEKDP 496 (851)
Q Consensus 420 ~m~~~-g~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~-~g~~~~A~~ll~~m~~~~~ 496 (851)
+..+. .+++ +......+..+-...|++..|..--+.+.+. .|...+|..|.++-.. .||-.++...+-+.++.--
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 33221 1233 5677778888889999999998877777664 4567777767776554 4999999999999887643
Q ss_pred CC
Q 038852 497 KP 498 (851)
Q Consensus 497 ~p 498 (851)
.|
T Consensus 395 dP 396 (531)
T COG3898 395 DP 396 (531)
T ss_pred CC
Confidence 44
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.1e-05 Score=84.52 Aligned_cols=122 Identities=18% Similarity=0.164 Sum_probs=69.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
.|+..+...++++.|+++|+++.+.++ + ....|++++...++-.+|++++.+.++.... |...+...+..|.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~p---e--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDP---E--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCC---c--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 444444455566666666666655432 2 3444555555566666666666666654333 555555555666666
Q ss_pred CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 260 GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLM 308 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~ 308 (851)
++++.|+++.+++.+..+. +..+|..|+.+|.+.|++++|+..++.+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666666655443 45566666666666666666666655543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00024 Score=73.32 Aligned_cols=241 Identities=12% Similarity=0.081 Sum_probs=122.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH----cCCCCCCHHHHHHHHHHH
Q 038852 112 QSLIRAGDLDAASYLARQAVFSRI--RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFD----QADIVPNIVSYNNLINTY 185 (851)
Q Consensus 112 ~~l~~~g~~~~A~~l~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~----~~~~~pd~~~~~~Li~~~ 185 (851)
..+....+.+.|+..+.+.+..-- .--..++..+..+..+.|.+++++..--..+. ...-..--..|..|.+++
T Consensus 14 ~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~ 93 (518)
T KOG1941|consen 14 LQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSN 93 (518)
T ss_pred HhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777766553211 11123455566666677777665543221111 100001123455555555
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGP---SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG-----ADSLVYNNLISGFL 257 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p---~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-----pd~~~~~~Li~~~~ 257 (851)
.+..++.+++.+-...+...+..+ -.....++..++...+-++++++.|+.+.+.-.. ....++..|...|.
T Consensus 94 e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~ 173 (518)
T KOG1941|consen 94 EKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA 173 (518)
T ss_pred HHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH
Confidence 555566666655555544433222 1123334555555566666666666666543211 11235566666666
Q ss_pred hcCCHHHHHHHHHHHHhc----CCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHH
Q 038852 258 NLGNLEKANELFDELKQR----CLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKE 333 (851)
Q Consensus 258 ~~g~~~~A~~~~~~~~~~----~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~ 333 (851)
...|+++|.-+..++.+. ++. |.... | .......|..++...|++.
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~k-------------------y----------r~~~lyhmaValR~~G~Lg 223 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSYGLK-DWSLK-------------------Y----------RAMSLYHMAVALRLLGRLG 223 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhcCcC-chhHH-------------------H----------HHHHHHHHHHHHHHhcccc
Confidence 666666666555444332 111 10000 0 0012233556667777777
Q ss_pred HHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 334 EAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 334 ~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
+|.+..+++.+..+.-............++++|...|+.|.|+.-|+.+
T Consensus 224 dA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 224 DAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred cHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 7777777665432222211123445566778888888888888777766
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.6e-05 Score=72.80 Aligned_cols=117 Identities=16% Similarity=0.249 Sum_probs=54.0
Q ss_pred cCChHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHH
Q 038852 188 EGKVDEGMNVFRRIIETAPVG-PSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGAD--SLVYNNLISGFLNLGNLEK 264 (851)
Q Consensus 188 ~g~~~~A~~l~~~~~~~~~~~-p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~Li~~~~~~g~~~~ 264 (851)
.++.+.+.+.++.+.+..+.. ........++..+...|++++|.+.|+.+++....++ ......|..++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555555555544331 0122333344555555666666666665555432211 1233344555555555555
Q ss_pred HHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 265 ANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKS 306 (851)
Q Consensus 265 A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 306 (851)
|+..++.+.... .....+..++++|.+.|++++|+..|+.
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555554422211 1223333444444444444444444443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2e-05 Score=73.31 Aligned_cols=99 Identities=10% Similarity=0.062 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLIS 254 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~ 254 (851)
......+...+...|++++|.++|+.+...++. +...|..|+.++-..|++++|++.|..+...++. |...+-.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~--~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~ 111 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW--SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 344556666677888888888888888887766 7778888888888888888888888888887765 7788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC
Q 038852 255 GFLNLGNLEKANELFDELKQRC 276 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~~ 276 (851)
++...|+.+.|++.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 8888888888888888777653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.5e-05 Score=82.55 Aligned_cols=121 Identities=21% Similarity=0.243 Sum_probs=67.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHH
Q 038852 286 TFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNE 365 (851)
Q Consensus 286 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~ 365 (851)
.|+..+...++++.|+++|+++.+.++ .....|+.++...++..+|++++.+.+..... +...+..-+..
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~p----ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~------d~~LL~~Qa~f 243 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDP----EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ------DSELLNLQAEF 243 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCC----cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHH
Confidence 334444445555555555555555543 23334555555555666666666666543221 45555555566
Q ss_pred HHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 366 CFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREI 421 (851)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 421 (851)
|.+.++++.|+++.+++....+. +..+|..|+.+|...|++++|+..++.+
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~-----~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPS-----EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCch-----hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 66666666666666666555444 5556666666666666666666655544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.8e-05 Score=72.64 Aligned_cols=128 Identities=17% Similarity=0.240 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--HHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVP-NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS--SNTYRHL 217 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~p-d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~--~~~~~~L 217 (851)
.|..++..+ ..++...+.+.++.+++..+-.+ .......+...+...|++++|...|+.++...+. ++ ..+...|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d-~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPD-PELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHH
Confidence 344444444 47888888888888877544221 1345566778888899999999999999886522 12 2355667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDEL 272 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~ 272 (851)
+.++...|++++|+..++...... .....+..++++|.+.|++++|+..|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 888889999999999997744332 24567778899999999999999998865
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.4e-05 Score=72.58 Aligned_cols=93 Identities=11% Similarity=0.102 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
...+..++..|...|++++|+..|+++++..+..++ ...|..++.++.+.|++++|+.+|+++++.... +...+..++
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 345556666666666666666666666654332222 345666666666666666666666666665433 455555666
Q ss_pred HHHHhcCCHHHHHHH
Q 038852 254 SGFLNLGNLEKANEL 268 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~ 268 (851)
.+|...|+...+..-
T Consensus 114 ~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 114 VIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHcCChHhHhhC
Confidence 666666655554433
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00016 Score=79.49 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038852 231 VDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDE 271 (851)
Q Consensus 231 ~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~ 271 (851)
+.-++++..+|..|+... ++..|+-.|.+.+|.++|.+
T Consensus 620 i~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 344566777776666543 45566667777777777654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.01 Score=59.57 Aligned_cols=227 Identities=18% Similarity=0.167 Sum_probs=132.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038852 152 AKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAV 231 (851)
Q Consensus 152 ~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~ 231 (851)
.+.+..+...+..++...........+..+...+...+++..+...+...............+..+...+...+++.+++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666666666666443221112456667777778888888888888777652001225556777777777788888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCC--ccchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 232 DLLRDMLSRQLGADSLVYNNLIS-GFLNLGNLEKANELFDELKQRCL--VYDGVVNATFMEWWFNQGKDKEAMQSYKSLM 308 (851)
Q Consensus 232 ~l~~~m~~~g~~pd~~~~~~Li~-~~~~~g~~~~A~~~~~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~ 308 (851)
+.+.......... ......... ++...|+++.|...|+++..... ......+......+...+++++++..+..+.
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888887754442 222333333 67777888888888887755322 1123333333344556666777777776666
Q ss_pred HhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccC
Q 038852 309 ERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTH 385 (851)
Q Consensus 309 ~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 385 (851)
..........+..+...+...++++.|...+..+...... ....+..+...+...+.++++...+.+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD------NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc------cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6543322345555666666666667777766666653221 1234444444444555566666666655443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.021 Score=61.38 Aligned_cols=409 Identities=13% Similarity=0.148 Sum_probs=212.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCChhHHHHHHHHHHHc-CCCC------------CC
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAA--MYRAKRYDDAVALFKYFFDQ-ADIV------------PN 174 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~~~~~-~~~~------------pd 174 (851)
+++++ -.++++.....+....+... ...|..|..+ +++.+.+++|++.|...... .+.. .|
T Consensus 52 ilnAf-fl~nld~Me~~l~~l~~~~~---~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~d 127 (549)
T PF07079_consen 52 ILNAF-FLNNLDLMEKQLMELRQQFG---KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSD 127 (549)
T ss_pred HHHHH-HHhhHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhH
Confidence 34444 34555555544444333221 1223333333 45889999999998876443 1111 12
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHc--------CC-------HHHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETA---PVGPSSNTYRHLTKGFVDA--------GR-------IGEAVDLLRD 236 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~---~~~p~~~~~~~Li~~~~~~--------g~-------~~~A~~l~~~ 236 (851)
...-+..+.++...|++.+++.+++++++.- ...-+..+|+.++-.+.+. .. ++.++-+.++
T Consensus 128 f~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kk 207 (549)
T PF07079_consen 128 FFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKK 207 (549)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHH
Confidence 2333677888999999999999999987652 1124778888865555432 11 2222222233
Q ss_pred HHhc------CCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCccchh-hHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 237 MLSR------QLGADSLVYNNLISGFLNLG--NLEKANELFDELKQRCLVYDGV-VNATFMEWWFNQGKDKEAMQSYKSL 307 (851)
Q Consensus 237 m~~~------g~~pd~~~~~~Li~~~~~~g--~~~~A~~~~~~~~~~~~~~d~~-~~~~li~~~~~~g~~~~A~~l~~~~ 307 (851)
|... .+.|.......++....-.- ...--+.+++.....-+.|+.. +...+...+.. +.+++..+.+.+
T Consensus 208 i~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~i 285 (549)
T PF07079_consen 208 IHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAI 285 (549)
T ss_pred HHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHH
Confidence 3222 12233333333333332221 1222223333333333333322 22333333333 444444444443
Q ss_pred HHhcCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCc-----cCHHHHHHHHHHHH-H---cCChHH
Q 038852 308 MERNFR----MTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQA-----VNSDTFNIMVNECF-K---HGKFSE 374 (851)
Q Consensus 308 ~~~~~~----~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~-----~~~~~~~~L~~~~~-~---~g~~~~ 374 (851)
....+. --..++..++...++.++..+|...+.-+.. ..|+... ....+ +-++.+ . .-+..+
T Consensus 286 a~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~---lq~Iv~~DD~~~Tklr~ 360 (549)
T PF07079_consen 286 ASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKV---LQDIVCEDDESYTKLRD 360 (549)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHH---HHHHHhcchHHHHHHHH
Confidence 322110 0125677888888899999999888876654 3332110 01111 222222 1 112233
Q ss_pred HHHHHHHhccCCCCCCCccCHHHH-HHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHH---cCC
Q 038852 375 AIETFKKAGTHPKSKPFAMDVAGY-NNIIARYCENEM-LEEAEKLLREISTKSLSPDVTTFRTLI----DAYLK---VER 445 (851)
Q Consensus 375 A~~~~~~~~~~~~~~~~~~d~~~~-~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~~~~~Ll----~~~~~---~g~ 445 (851)
-+.+++.+...+.++- -.+.| ..-+.-+-+.|. -++|+++++.++.-. .-|...-+.+. ..|.. ...
T Consensus 361 yL~lwe~~qs~DiDrq---QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~ 436 (549)
T PF07079_consen 361 YLNLWEEIQSYDIDRQ---QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHA 436 (549)
T ss_pred HHHHHHHHHhhcccHH---HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3445555533322110 11222 223344555666 788999999888642 22444333322 22222 233
Q ss_pred HHHHHHHHHHHHHcCCccchhH----HHHHHH--HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 038852 446 IDDALELFNRMVESGLRVVVSF----GTKVFN--ELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMS 519 (851)
Q Consensus 446 ~~~A~~~~~~m~~~~~~~~~~~----~~~L~~--~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A 519 (851)
+.+-+++-+-+.+.|+.+...- -+.|.+ .+...|++.++.-.-.-+.+ +.|+..+|..+.-++....++++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence 4444555555556677663332 233322 34568999999876666655 578999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHH
Q 038852 520 KDIVDQMMKYGVGITPALQDF 540 (851)
Q Consensus 520 ~~~~~~m~~~g~~~~~~~~~~ 540 (851)
.+++.++ +++.++++.
T Consensus 515 ~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 515 WEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHhC-----CCchhhHHH
Confidence 9999874 455555554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.7e-05 Score=65.52 Aligned_cols=91 Identities=25% Similarity=0.438 Sum_probs=40.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
.++..+...|++++|+.+|+++++..+. +..++..++.++...+++++|+++|+++++.... +..++..++.++...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPD--NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 3444444444444444444444443322 2234444444444444444454444444443322 233444444444444
Q ss_pred CCHHHHHHHHHHHH
Q 038852 260 GNLEKANELFDELK 273 (851)
Q Consensus 260 g~~~~A~~~~~~~~ 273 (851)
|++++|.+.++++.
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 44444444444443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00011 Score=66.59 Aligned_cols=100 Identities=18% Similarity=0.284 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 038852 142 CNAIIAAMYRAKRYDDAVALFKYFFDQADIVP-NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGP-SSNTYRHLTK 219 (851)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~p-d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p-~~~~~~~Li~ 219 (851)
+..++..+.+.|++++|++.|+.++...+-.+ ....+..++.++.+.|++++|+.+|++++...+..+ ...++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34455555556666666666666554322111 123444555666666666666666666655443321 1334555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC
Q 038852 220 GFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~g 241 (851)
++...|++++|+.+|+++++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 6666666666666666666553
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00062 Score=70.18 Aligned_cols=183 Identities=15% Similarity=0.114 Sum_probs=87.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSS-NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 178 ~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~-~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
+...+..+...|++++|++.|++++...+..+-. .+...++.+|.+.+++++|+..|++.++..+.-...-+...+.+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 3344445556667777777777666665542111 122345566666667777777776666654332222222222222
Q ss_pred H--hcC---------------C---HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCH
Q 038852 257 L--NLG---------------N---LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTP 316 (851)
Q Consensus 257 ~--~~g---------------~---~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~ 316 (851)
+ ..+ | ..+|+..|+++++.-+. ..-..+|...+..+.+.--
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~---------------S~ya~~A~~rl~~l~~~la---- 175 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN---------------SQYTTDATKRLVFLKDRLA---- 175 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC---------------ChhHHHHHHHHHHHHHHHH----
Confidence 1 111 1 12344444444443222 1112222222222211100
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 317 ATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 317 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
..-..++..|.+.|++..|+.-|+.+++.-.... ...++...++.+|.+.|..++|.++...+
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~---~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQ---ATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCc---hHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0111355666667777777777777766422211 14455666666666666666666655544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0011 Score=68.46 Aligned_cols=185 Identities=11% Similarity=0.089 Sum_probs=102.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHH
Q 038852 210 SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLV---YNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNAT 286 (851)
Q Consensus 210 ~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~---~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~ 286 (851)
+...+...+..+...|++++|++.|++++...... ... ...++.+|.+.+++++|...|+++++..+.....-+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 44455556677788899999999999998875542 322 24577888899999999999999888765533333333
Q ss_pred HHHHHH--HcC---------------C---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038852 287 FMEWWF--NQG---------------K---DKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNH 346 (851)
Q Consensus 287 li~~~~--~~g---------------~---~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~ 346 (851)
.+.+.+ ..+ | ..+|++.|+++++. |=...-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH-
Confidence 332222 111 1 12233333333333 22222233333333333221
Q ss_pred CCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 347 QPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREI 421 (851)
Q Consensus 347 ~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 421 (851)
-..--..++..|.+.|++..|+.-|+.+.+..+..+. .......++.+|...|..++|.++...+
T Consensus 174 --------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~--~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 --------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQA--TRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred --------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCch--HHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0112234556666677777676666666665554332 3344555666666666666666655544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.7e-05 Score=73.47 Aligned_cols=82 Identities=13% Similarity=0.026 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGP-SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p-~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
...|..++..+...|++++|+..|++++...+... ...+|..++.+|...|++++|++.|+++++.... ...++..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 34455555555555666666666666554432211 1235555566666666666666666665554322 334444444
Q ss_pred HHHH
Q 038852 254 SGFL 257 (851)
Q Consensus 254 ~~~~ 257 (851)
.++.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.1e-05 Score=75.24 Aligned_cols=92 Identities=18% Similarity=0.198 Sum_probs=65.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHH
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDK 298 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 298 (851)
.-+.+.++|.+|+..|.++++.... |.+.|..-..+|.++|.++.|++-.+..+..+.. ....|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 3455677888888888888877665 7777888888888888888888877777776554 4556666666666666666
Q ss_pred HHHHHHHHHHHhcC
Q 038852 299 EAMQSYKSLMERNF 312 (851)
Q Consensus 299 ~A~~l~~~~~~~~~ 312 (851)
+|++.|++.++.++
T Consensus 167 ~A~~aykKaLeldP 180 (304)
T KOG0553|consen 167 EAIEAYKKALELDP 180 (304)
T ss_pred HHHHHHHhhhccCC
Confidence 66666666666543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.4e-06 Score=56.29 Aligned_cols=32 Identities=41% Similarity=0.950 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 038852 170 DIVPNIVSYNNLINTYCDEGKVDEGMNVFRRI 201 (851)
Q Consensus 170 ~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~ 201 (851)
|+.||.++|++||.+|++.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45556666666666666666666666666554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0011 Score=65.68 Aligned_cols=138 Identities=13% Similarity=0.057 Sum_probs=96.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 038852 282 VVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNI 361 (851)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~ 361 (851)
.+.+.++.++...|++.-.+..++++++.+.+.++.....|+..-...||.+.|..+|++..+..-+-+....+..+..+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 35556666677777888888888888887777777888888888888888888888888776543332221123334445
Q ss_pred HHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038852 362 MVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTK 424 (851)
Q Consensus 362 L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 424 (851)
....|.-.+++.+|...|+++...++. |....|.-+.++...|+..+|++.++.|+..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-----~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-----NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-----chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 555666777788888888877766555 5666666666666678888888888888764
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.002 Score=76.42 Aligned_cols=82 Identities=20% Similarity=0.262 Sum_probs=40.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh
Q 038852 437 IDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLF 516 (851)
Q Consensus 437 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~ 516 (851)
+.+|..+|++.+|+.+..++...... ...+...|+.-+...++.-+|.+++.+.... ....+..|++...|
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEW 1042 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHH
Confidence 34444555555555554444321100 1111123555556666666666666665442 12234455666667
Q ss_pred HHHHHHHHHHH
Q 038852 517 DMSKDIVDQMM 527 (851)
Q Consensus 517 ~~A~~~~~~m~ 527 (851)
++|+.+.....
T Consensus 1043 ~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1043 EEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHhcc
Confidence 77766655443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00022 Score=69.56 Aligned_cols=95 Identities=14% Similarity=0.127 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHH
Q 038852 210 SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGAD--SLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATF 287 (851)
Q Consensus 210 ~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l 287 (851)
....+..++..+...|++++|+.+|+++++....++ ...+..++.+|.+.|++++|+.+|+++++.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 455788888889999999999999999987654332 367888889999999999999999988876544 45566666
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 038852 288 MEWWFNQGKDKEAMQSYK 305 (851)
Q Consensus 288 i~~~~~~g~~~~A~~l~~ 305 (851)
+.+|...|+...+...++
T Consensus 113 g~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHHcCChHhHhhCHH
Confidence 777777777665554443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0029 Score=62.87 Aligned_cols=135 Identities=11% Similarity=0.092 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHH-----H
Q 038852 248 VYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNT-----L 322 (851)
Q Consensus 248 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~-----L 322 (851)
+.+.++.++.-.|++.-...++.++++++...+......|+.+-...||.+.|..+|+++.+..-+.+..+.+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45567777777888888888888888887777888888888888999999999999987776544444333333 3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCC
Q 038852 323 LEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKS 388 (851)
Q Consensus 323 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~ 388 (851)
...|.-.+++.+|...|.+++..+.. +....+.-+.+..-.|+..+|++.++.+....+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~------~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR------NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC------chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 44566678889999999888875433 6667777777778889999999999998766443
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.032 Score=60.30 Aligned_cols=451 Identities=14% Similarity=0.092 Sum_probs=233.8
Q ss_pred cHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHH-HcCChhHHHHHHHHHHHcCCCCCCH-----
Q 038852 106 NLHNRVQSLIRAG--DLDAASYLARQAVFSRIRPT--VFTCNAIIAAMY-RAKRYDDAVALFKYFFDQADIVPNI----- 175 (851)
Q Consensus 106 ~l~~ll~~l~~~g--~~~~A~~l~~~~~~~~~~~~--~~~~~~li~~~~-~~g~~~~A~~l~~~~~~~~~~~pd~----- 175 (851)
.+..++..+...| ++..+++.++......+..- +.+...|+..+. -.++++.|..-++++.....--|+.
T Consensus 9 aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf 88 (629)
T KOG2300|consen 9 ALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKF 88 (629)
T ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhh
Confidence 3455666666777 78888888887665443222 223333444433 3678888988888876543333332
Q ss_pred HHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038852 176 VSYNNLINTYCDEG-KVDEGMNVFRRIIETAPVGPS--SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNL 252 (851)
Q Consensus 176 ~~~~~Li~~~~~~g-~~~~A~~l~~~~~~~~~~~p~--~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L 252 (851)
.++..|...|.... .+..|..++++.++.....|- .....-|+..+.-..|+..|.+++.--.+. -.+-...|..+
T Consensus 89 ~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~s-Ad~~~~~ylr~ 167 (629)
T KOG2300|consen 89 QAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES-ADHICFPYLRM 167 (629)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccc-cchhhhHHHHH
Confidence 35677888888776 788999999999887544331 112234666777788888888874322111 11112223222
Q ss_pred HHH------HHhcCC---HHHHHHHHHHHHhcCCccchh------hH--HHHHHHHHHcCCHHHHHHHHHHHHHh---cC
Q 038852 253 ISG------FLNLGN---LEKANELFDELKQRCLVYDGV------VN--ATFMEWWFNQGKDKEAMQSYKSLMER---NF 312 (851)
Q Consensus 253 i~~------~~~~g~---~~~A~~~~~~~~~~~~~~d~~------~~--~~li~~~~~~g~~~~A~~l~~~~~~~---~~ 312 (851)
+.. .....| ++++....+.|.+. ..+|.. +| ..-+..|...|+...+...++.+.+. ..
T Consensus 168 ~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis 246 (629)
T KOG2300|consen 168 LFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS 246 (629)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC
Confidence 211 122223 44444445555543 222321 11 12233456678877777777655431 10
Q ss_pred ------------CCCHHHHHHHHH----H---------HHhCCCHHHHHHHHHHHHHcCCCCCCCccCH--------HHH
Q 038852 313 ------------RMTPATCNTLLE----V---------LLKHEKKEEAQALFEQMLDNHQPPNIQAVNS--------DTF 359 (851)
Q Consensus 313 ------------~~~~~~~~~Li~----~---------~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~--------~~~ 359 (851)
.+....+..+.+ + -.-.|-+++|.++-++++..-.+-....... .+.
T Consensus 247 t~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~L 326 (629)
T KOG2300|consen 247 TSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILL 326 (629)
T ss_pred CCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 111111111111 1 1134556777776666654311110000011 122
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhccCCCCCCCcc----CHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-
Q 038852 360 NIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAM----DVAGYNNII-ARYCENEMLEEAEKLLREISTKSLSPDVTTF- 433 (851)
Q Consensus 360 ~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----d~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~- 433 (851)
..++.+-.-.|++.+|++-+..|.+.....+-.. .......|+ ..++..+.++.|+.-|.+..+.--.-|...+
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2333333457899999888877755432222100 111122233 3345578899999999888765333343332
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHcCCcc------chhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH-----H
Q 038852 434 -RTLIDAYLKVERIDDALELFNRMVESGLRV------VVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDF-----L 501 (851)
Q Consensus 434 -~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~------~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~-----~ 501 (851)
..+...|.+.|+.+.-.++++.+-..+... ...++....-...+.+++.||..++.+.++..-.-|. .
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~ 486 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTAC 486 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence 456677888888777666666654332111 0111111222234689999999999987764311111 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCHHHHH--HHHHHHHhcCC--HHHHHHHH
Q 038852 502 IYDVVVRGLCNEGLFDMSKDIVDQMMK---YGVGITPALQD--FVRETFGKAGR--GEEIERVL 558 (851)
Q Consensus 502 ~~~~ll~a~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~--~L~~~~~~~G~--~~eA~~ll 558 (851)
.+..|...+...|+..++.+...-.+. +-.+.....+. .+-++|...|+ .++..+.|
T Consensus 487 ~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~ 550 (629)
T KOG2300|consen 487 SLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAF 550 (629)
T ss_pred HHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 222333445567888888887766553 22222222222 24555666666 44444443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0077 Score=64.41 Aligned_cols=110 Identities=17% Similarity=0.171 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 358 TFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLI 437 (851)
Q Consensus 358 ~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll 437 (851)
+.+..+.-+...|....|.++..+... +|...|...+.+|+..++|++-.++... + -..+-|..++
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv--------~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv 244 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKV--------PDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFV 244 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCC--------cHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHH
Confidence 334445555566666666666555521 2566677777777777777766654332 1 1234566677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 438 DAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKM 491 (851)
Q Consensus 438 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m 491 (851)
.+|.+.|+..+|..+..++.. ..-+..|++.|++.+|.+.-.+.
T Consensus 245 ~~~~~~~~~~eA~~yI~k~~~----------~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 245 EACLKYGNKKEASKYIPKIPD----------EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHCCCHHHHHHHHHhCCh----------HHHHHHHHHCCCHHHHHHHHHHc
Confidence 777777777777766666221 12456667777777766654443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0032 Score=72.03 Aligned_cols=181 Identities=12% Similarity=0.146 Sum_probs=110.4
Q ss_pred CccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 038852 104 RLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPT--VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNL 181 (851)
Q Consensus 104 ~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~L 181 (851)
+.++-..+..+++...++.|+.+.+.- +...+ .......++.+++.|++++|...|-+.+.. +.| ..+
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~-----s~V 403 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEP-----SEV 403 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CCh-----HHH
Confidence 456777788888888888887776542 22222 233445555566788888888888776432 222 234
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038852 182 INTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGN 261 (851)
Q Consensus 182 i~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~ 261 (851)
|.-|.+..+..+-..+++.+.+.+-. +...-..|+.+|.+.++.++-.++.+..- .|.. ..-....+..|.+.+-
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla--~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sny 478 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA--NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNY 478 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc--cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhCh
Confidence 55556666666667777777766533 44456678888888888887776665544 2211 1113456666777777
Q ss_pred HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 262 LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSL 307 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~ 307 (851)
+++|..+-.+... ...+ +...+-..+++++|++++..+
T Consensus 479 l~~a~~LA~k~~~-----he~v---l~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 479 LDEAELLATKFKK-----HEWV---LDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHHhcc-----CHHH---HHHHHHHhcCHHHHHHHHhcC
Confidence 7777666555433 1122 222355678888888887664
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.03 E-value=8e-05 Score=78.74 Aligned_cols=132 Identities=14% Similarity=0.195 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTK 219 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~ 219 (851)
.+|..++..+.+.+..+.|..+|.++++...+..+++...+++. |...++.+.|.++|+.+++..+. +...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f~~--~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKFPS--DPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHHTT---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHH
Confidence 35666666666666666777777666543333333333333332 22234455566777666666444 5566666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 220 GFVDAGRIGEAVDLLRDMLSRQLGADS---LVYNNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~g~~pd~---~~~~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
.++..|+.+.|..+|++++.. +..+. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666654 22121 35555666556666666666665555543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00013 Score=79.86 Aligned_cols=92 Identities=16% Similarity=0.144 Sum_probs=52.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 038852 147 AAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGR 226 (851)
Q Consensus 147 ~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~ 226 (851)
..+...|++++|+++|+++++... .+...|..++.+|...|++++|+..++++++.++. +...|..++.+|...|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P--~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~--~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP--NNAELYADRAQANIKLGNFTEAVADANKAIELDPS--LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHhCC
Confidence 344455666666666666555322 23445555556666666666666666666655544 45555566666666666
Q ss_pred HHHHHHHHHHHHhcCC
Q 038852 227 IGEAVDLLRDMLSRQL 242 (851)
Q Consensus 227 ~~~A~~l~~~m~~~g~ 242 (851)
+++|+..|+++++.+.
T Consensus 86 ~~eA~~~~~~al~l~P 101 (356)
T PLN03088 86 YQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 6666666666665543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.5e-05 Score=63.23 Aligned_cols=95 Identities=21% Similarity=0.387 Sum_probs=65.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038852 142 CNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGF 221 (851)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~ 221 (851)
+..++..+...|++++|+.+|+++++... .+...+..++.++...|++++|+++|+++++..+. +..++..++.++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP--DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD--NAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--chhHHHHHHHHH
Confidence 44566666777777777777777765432 23356667777777777777777777777766544 445677777777
Q ss_pred HHcCCHHHHHHHHHHHHhc
Q 038852 222 VDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 222 ~~~g~~~~A~~l~~~m~~~ 240 (851)
...|++++|.++++++++.
T Consensus 79 ~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 79 YKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHhHHHHHHHHHHHHcc
Confidence 7777777777777776654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.071 Score=63.18 Aligned_cols=416 Identities=12% Similarity=0.036 Sum_probs=209.8
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCCCCH-
Q 038852 136 RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN--IVSYNNLINTYC-DEGKVDEGMNVFRRIIETAPVGPSS- 211 (851)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd--~~~~~~Li~~~~-~~g~~~~A~~l~~~~~~~~~~~p~~- 211 (851)
+.++..|..||. .|++.++.+++...+.|. +.++..++..|. ...++++|+..+++.+..... .+.
T Consensus 27 ~~~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~ 96 (608)
T PF10345_consen 27 EEQLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLT 96 (608)
T ss_pred hhhHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchH
Confidence 345666776665 456677766654444443 446666777776 668899999999888655422 221
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcC---Ccc
Q 038852 212 ----NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG----ADSLVYNNL-ISGFLNLGNLEKANELFDELKQRC---LVY 279 (851)
Q Consensus 212 ----~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~----pd~~~~~~L-i~~~~~~g~~~~A~~~~~~~~~~~---~~~ 279 (851)
.....++..+.+.+... |+..+++.++.--. .-...|..+ +..+...+|+..|.+.++.+.... ..+
T Consensus 97 d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 97 DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 12334566677666555 88888887764221 111223223 223333478888999888877543 222
Q ss_pred chhhHHHHHHHH--HHcCCHHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHH--HhCCCHHHHHHHHHHHH---
Q 038852 280 DGVVNATFMEWW--FNQGKDKEAMQSYKSLMERNF---------RMTPATCNTLLEVL--LKHEKKEEAQALFEQML--- 343 (851)
Q Consensus 280 d~~~~~~li~~~--~~~g~~~~A~~l~~~~~~~~~---------~~~~~~~~~Li~~~--~~~g~~~~A~~l~~~m~--- 343 (851)
...++..++.+. .+.+..+++++.++.+..... .+...+|..+++.+ ...|+++.+...++++.
T Consensus 176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~ 255 (608)
T PF10345_consen 176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFL 255 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 334444444443 345666777777777644322 12345666666554 45566666655544432
Q ss_pred HcCCCC--------CC--------------------CccC---H--HHHHHHHHHHHHcCChHHHHHHHHHhccC-----
Q 038852 344 DNHQPP--------NI--------------------QAVN---S--DTFNIMVNECFKHGKFSEAIETFKKAGTH----- 385 (851)
Q Consensus 344 ~~~~~p--------~~--------------------~~~~---~--~~~~~L~~~~~~~g~~~~A~~~~~~~~~~----- 385 (851)
+..... +. ...+ . .+|..-+..++..+..++|.++++++...
T Consensus 256 ~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~ 335 (608)
T PF10345_consen 256 DEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK 335 (608)
T ss_pred HHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh
Confidence 211110 10 0001 1 11222223344556665666666554221
Q ss_pred ---CCCCCCcc----CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHhCCC-CC-------CHHHHHHHHHHHH
Q 038852 386 ---PKSKPFAM----DVAGYNNIIAR---------YCENEMLEEAEKLLREISTKSL-SP-------DVTTFRTLIDAYL 441 (851)
Q Consensus 386 ---~~~~~~~~----d~~~~~~li~~---------~~~~g~~~~A~~l~~~m~~~g~-~p-------d~~~~~~Ll~~~~ 441 (851)
........ +...|...+.. .+-.+++..|...+++|.+..- .+ ...++...+..+-
T Consensus 336 ~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q 415 (608)
T PF10345_consen 336 IKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQ 415 (608)
T ss_pred ccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHH
Confidence 11111110 11223222222 3347889999999998876421 11 1334444555566
Q ss_pred HcCCHHHHHHHHH--------HHHHcCCccchhHHHHH--HHHHHH--cCCHHH--HHHHHHHHhhC---CCCCCHHHHH
Q 038852 442 KVERIDDALELFN--------RMVESGLRVVVSFGTKV--FNELIT--KGKVAE--CAPILTKMGEK---DPKPDFLIYD 504 (851)
Q Consensus 442 ~~g~~~~A~~~~~--------~m~~~~~~~~~~~~~~L--~~~~~~--~g~~~~--A~~ll~~m~~~---~~~pd~~~~~ 504 (851)
..|+.+.|+..|. .+...+...+..++..+ +..+.. ..+.++ +.++++.+... ....+..++.
T Consensus 416 ~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~ 495 (608)
T PF10345_consen 416 STGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAY 495 (608)
T ss_pred HcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHH
Confidence 7899999999998 44445554444444321 122222 222333 66777766442 1122333333
Q ss_pred HH-HHHHHhcC--ChHHHHHHHHHHHHcC--CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038852 505 VV-VRGLCNEG--LFDMSKDIVDQMMKYG--VGITPA----LQDFVRETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 505 ~l-l~a~~~~g--~~~~A~~~~~~m~~~g--~~~~~~----~~~~L~~~~~~~G~~~eA~~ll~~~~~ 563 (851)
.+ +.++.... ...++...+.+.++.- ...+.. .++++...+. .|+..|..+.......
T Consensus 496 ~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~ 562 (608)
T PF10345_consen 496 CLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQ 562 (608)
T ss_pred HHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 33 43443222 2235555544443211 111111 2222333333 6888887777666443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.3e-05 Score=67.97 Aligned_cols=80 Identities=23% Similarity=0.452 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038852 189 GKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANEL 268 (851)
Q Consensus 189 g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~ 268 (851)
|+++.|+.+|+++++..+..++...+..++.+|.+.|++++|++++++ .+.+.. +......++.+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 444444444444444433211222333344444444444444444444 222111 222222334444444444444444
Q ss_pred HH
Q 038852 269 FD 270 (851)
Q Consensus 269 ~~ 270 (851)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.9e-06 Score=55.24 Aligned_cols=32 Identities=53% Similarity=0.919 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 425 SLSPDVTTFRTLIDAYLKVERIDDALELFNRM 456 (851)
Q Consensus 425 g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m 456 (851)
|+.||..+|++||.+|++.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00014 Score=79.64 Aligned_cols=96 Identities=10% Similarity=0.129 Sum_probs=81.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
..+..+...|++++|+++|+++++.++. +...|..++.+|...|++++|+..++++++.... +...|..++.+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~--~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPN--NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHh
Confidence 3455677889999999999999998776 7788889999999999999999999999988655 778888899999999
Q ss_pred CCHHHHHHHHHHHHhcCCc
Q 038852 260 GNLEKANELFDELKQRCLV 278 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~~~ 278 (851)
|++++|+..|+++++.+..
T Consensus 84 g~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPG 102 (356)
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 9999999999998887654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00017 Score=65.23 Aligned_cols=102 Identities=15% Similarity=0.240 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGP-SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA--DSLVYNNLI 253 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p-~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~~~~~Li 253 (851)
++..++..+.+.|++++|++.|+++++..+..+ ....+..++.++.+.|++++|+++|++++...... ...++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 456667777778888888888888877654322 23456667777888888888888888777653321 235566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCc
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLV 278 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~ 278 (851)
.++.+.|++++|.++++++++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcC
Confidence 7777777888888777777766443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00047 Score=75.94 Aligned_cols=101 Identities=16% Similarity=0.183 Sum_probs=52.9
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
+.+...+..++.+|.+++|..+.--. .....|..|.......=+++-|.+.|.+.. |. -|..|
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclg------Vv~~DW~~LA~~ALeAL~f~~ARkAY~rVR-------dl-~~L~l--- 619 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLG------VTDTDWRELAMEALEALDFETARKAYIRVR-------DL-RYLEL--- 619 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccc------eecchHHHHHHHHHhhhhhHHHHHHHHHHh-------cc-HHHHH---
Confidence 44455567788899999887654321 122345555554445555666665555441 11 12222
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRD 236 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~ 236 (851)
+.-++++.+++ ..|+.. .++..++-.|++.+|.++|.+
T Consensus 620 ----------i~EL~~~k~rg-e~P~~i---LlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 620 ----------ISELEERKKRG-ETPNDL---LLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ----------HHHHHHHHhcC-CCchHH---HHHHHHHhhhhHHHHHHHHHH
Confidence 22234443332 434432 245556666777777777654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.2e-05 Score=68.09 Aligned_cols=82 Identities=20% Similarity=0.440 Sum_probs=52.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038852 152 AKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAV 231 (851)
Q Consensus 152 ~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~ 231 (851)
.|+++.|+.+|+++++.....++...+..++.+|.+.|++++|++++++ .+.++. +......++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS--NPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--HHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--CHHHHHHHHHHHHHhCCHHHHH
Confidence 4677777777777776543222444555577777777777777777776 333322 3345556677777788888887
Q ss_pred HHHHH
Q 038852 232 DLLRD 236 (851)
Q Consensus 232 ~l~~~ 236 (851)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.8e-05 Score=71.81 Aligned_cols=96 Identities=10% Similarity=0.041 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVP-NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~p-d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
...|..++..+...|++++|+..|++++....... ...+|..++.+|...|++++|++.|+++++..+. ...++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~--~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF--LPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--cHHHHHHH
Confidence 56677888888899999999999999976533222 2458899999999999999999999999987655 55677777
Q ss_pred HHHHH-------HcCCHHHHHHHHHH
Q 038852 218 TKGFV-------DAGRIGEAVDLLRD 236 (851)
Q Consensus 218 i~~~~-------~~g~~~~A~~l~~~ 236 (851)
+.++. ..|++++|+..+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 77777 55666554444443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00031 Score=65.53 Aligned_cols=98 Identities=10% Similarity=-0.023 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHH
Q 038852 211 SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEW 290 (851)
Q Consensus 211 ~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~ 290 (851)
......+...+...|++++|..+|+.+...++. +..-|..|+.+|-..|++++|++.|..+...++. |...+..+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 345556677777888888888888888887666 7777888888888888888888888888887765 77777777788
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q 038852 291 WFNQGKDKEAMQSYKSLMER 310 (851)
Q Consensus 291 ~~~~g~~~~A~~l~~~~~~~ 310 (851)
+.+.|+.+.|++.|+.++..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888777766654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0061 Score=72.48 Aligned_cols=341 Identities=14% Similarity=0.164 Sum_probs=181.2
Q ss_pred CCccHHHHHHHHHHcCCHHHHHHHHHHHHHc-C--CCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHcCCCCCCHH--
Q 038852 103 PRLNLHNRVQSLIRAGDLDAASYLARQAVFS-R--IRPTVFTCNAIIAAMYRA-KRYDDAVALFKYFFDQADIVPNIV-- 176 (851)
Q Consensus 103 ~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~-~--~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~~~~~~~~~pd~~-- 176 (851)
+|.-....++.+++..++.+|..+.++-.-. + +..+...+..-+.++.+. ++.+--..++..+ +..++..+..
T Consensus 676 pR~lVLa~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~l-k~eDvtk~~y~~ 754 (1265)
T KOG1920|consen 676 PRILVLAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTEL-KEEDVTKTMYSS 754 (1265)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhc-ccchhhhhhccc
Confidence 4555667788999999999998776653210 0 112233344444455543 3333333333322 2111111100
Q ss_pred HHHHHHHHHHHc----CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCCHHH--
Q 038852 177 SYNNLINTYCDE----GKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG--RIGEAVDLLRDMLSRQLGADSLV-- 248 (851)
Q Consensus 177 ~~~~Li~~~~~~----g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~~-- 248 (851)
++.+-..+|... .+.+...++++..+.+. .|+ .....+|..|++.+ .+++|+....+........+...
T Consensus 755 ~~~s~k~~~~~r~~~d~kv~~vc~~vr~~l~~~--~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al 831 (1265)
T KOG1920|consen 755 TSGSGKQVYMSRDPYDNKVNSVCDAVRNALERR--APD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEAL 831 (1265)
T ss_pred cccccceeEEeccchhhHHHHHHHHHHHHHhhc--Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 011111122222 22333444444444432 334 34556778888877 77777777777664211111110
Q ss_pred --------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHH-------------HcCCHHHHHHHHHHH
Q 038852 249 --------YNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWF-------------NQGKDKEAMQSYKSL 307 (851)
Q Consensus 249 --------~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~-------------~~g~~~~A~~l~~~~ 307 (851)
-+.|.+...-.=|++.|..+.+.-.+ |..-|.-+++-+. ..+++++|+.-+.++
T Consensus 832 ~hll~Lvdvn~lfn~ALgtYDl~Lal~VAq~Sqk-----DPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~ 906 (1265)
T KOG1920|consen 832 KHLLFLVDVNELFNSALGTYDLDLALLVAQKSQK-----DPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSEC 906 (1265)
T ss_pred HHHHhhccHHHHHHhhhcccchHHHHHHHHHhcc-----ChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHc
Confidence 01112222222233444333322211 3333333322222 123444444444333
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCC
Q 038852 308 MERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPK 387 (851)
Q Consensus 308 ~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~ 387 (851)
. ...|.-.++.-.++|-+.+|+.++..-.+. ....|...+..+.....+++|.-.|+...+
T Consensus 907 ~-------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~---------~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk--- 967 (1265)
T KOG1920|consen 907 G-------ETYFPECKNYIKKHGLYDEALALYKPDSEK---------QKVIYEAYADHLREELMSDEAALMYERCGK--- 967 (1265)
T ss_pred C-------ccccHHHHHHHHhcccchhhhheeccCHHH---------HHHHHHHHHHHHHHhccccHHHHHHHHhcc---
Confidence 2 234555555556777777777776543332 345677777888888999999999988743
Q ss_pred CCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccch
Q 038852 388 SKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVT--TFRTLIDAYLKVERIDDALELFNRMVESGLRVVV 465 (851)
Q Consensus 388 ~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 465 (851)
....+.+|..+|++++|+.+...+... -|.. +-..|+.-+...++.-+|-++..+....-
T Consensus 968 ----------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~----- 1029 (1265)
T KOG1920|consen 968 ----------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP----- 1029 (1265)
T ss_pred ----------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH-----
Confidence 334567888899999999998877532 2322 23567777888888888888877766421
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 038852 466 SFGTKVFNELITKGKVAECAPILTKMG 492 (851)
Q Consensus 466 ~~~~~L~~~~~~~g~~~~A~~ll~~m~ 492 (851)
...+..|++...|++|+++.....
T Consensus 1030 ---~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1030 ---EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred ---HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 224566777788888887776654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00011 Score=74.58 Aligned_cols=94 Identities=21% Similarity=0.234 Sum_probs=72.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038852 182 INTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGN 261 (851)
Q Consensus 182 i~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~ 261 (851)
+.-+.+.++|.+|+..|.++++.+|. |.+.|..-+.+|.+.|.++.|++-.+.++..+.. ...+|..|+.+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~--nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPT--NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCc
Confidence 34456778888888888888887766 7777888888888888888888888888877544 55778888888888888
Q ss_pred HHHHHHHHHHHHhcCCc
Q 038852 262 LEKANELFDELKQRCLV 278 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~~ 278 (851)
+++|++.|++.++.+..
T Consensus 165 ~~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPD 181 (304)
T ss_pred HHHHHHHHHhhhccCCC
Confidence 88888888887776544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00021 Score=73.73 Aligned_cols=212 Identities=10% Similarity=0.008 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHH
Q 038852 317 ATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVA 396 (851)
Q Consensus 317 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~ 396 (851)
.++..+..+.++.|.+++++..--..++....-+....-.+.|..+.+.+.+.-++.+++.+-+.....+....-..-..
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 34555566666666666655432222211000000001345778888888888888888888877665544433222234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCccchhH
Q 038852 397 GYNNIIARYCENEMLEEAEKLLREISTKSLSP-----DVTTFRTLIDAYLKVERIDDALELFNRMVES----GLRVVVSF 467 (851)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~ 467 (851)
....|..++...+.++++++.|+.+.+.-... ...++..|...|....|+++|.-+..++.+. +++....-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 44557777778888999999999876532111 2357889999999999999999888877653 33333322
Q ss_pred HH-----HHHHHHHHcCCHHHHHHHHHHHhhCCCC-CCHH----HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038852 468 GT-----KVFNELITKGKVAECAPILTKMGEKDPK-PDFL----IYDVVVRGLCNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 468 ~~-----~L~~~~~~~g~~~~A~~ll~~m~~~~~~-pd~~----~~~~ll~a~~~~g~~~~A~~~~~~m~~ 528 (851)
|. .+..+|...|+.-+|.+..++..+..+. -|.. ....+.+.|...|+.|.|..-|+.+..
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 22 2445667778888887777775443111 1333 345567778889999998888888765
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.013 Score=62.58 Aligned_cols=111 Identities=16% Similarity=0.130 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Q 038852 397 GYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELI 476 (851)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~ 476 (851)
+.+..|.-+...|....|.++..+.. + ||...|...+.+|+..++|++-.++... . + ...-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s---k--K-sPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS---K--K-SPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C--C-CCCChHHHHHHHH
Confidence 45556677778899988888877663 3 6888999999999999999987775432 1 1 2234455788999
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038852 477 TKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMM 527 (851)
Q Consensus 477 ~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~ 527 (851)
+.|+..+|..++.++. +..-+..|.+.|++.+|.+...+..
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 9999999999988832 2446788889999999987765543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.034 Score=55.69 Aligned_cols=203 Identities=19% Similarity=0.112 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHH
Q 038852 317 ATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVA 396 (851)
Q Consensus 317 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~ 396 (851)
..+..+...+...+++..+...+.........+. ....+..++..+...+++..+++.+......... +..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 130 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPN----LAEALLNLGLLLEALGKYEEALELLEKALALDPD-----PDL 130 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccc----hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC-----cch
Confidence 3444455555566666666666655543100110 3445555556666666666666666665443222 111
Q ss_pred HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHH
Q 038852 397 GYNNIIA-RYCENEMLEEAEKLLREISTKSL--SPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFN 473 (851)
Q Consensus 397 ~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~--~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~ 473 (851)
....... ++...|++++|...+.+...... ......+..+...+...+++++++..+.++.+.........+..+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (291)
T COG0457 131 AEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGL 210 (291)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhH
Confidence 1222222 45566666666666666644211 01223333344445556666666666666666543312233334555
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038852 474 ELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKY 529 (851)
Q Consensus 474 ~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~ 529 (851)
.+...+++++|...+......... ....+..+...+...+.++++...+.+..+.
T Consensus 211 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 211 LYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666666654222 2333333444444555667777666666654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00021 Score=75.59 Aligned_cols=132 Identities=12% Similarity=0.125 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD-AGRIGEAVDLLRDMLSRQLGADSLVYNNLIS 254 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~-~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~ 254 (851)
.+|..+++.+.+.+..+.|..+|.++++.... +..+|...+..-.. .++.+.|.++|+.+++. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 45777777777777788888888888754433 44455555555344 45666688888888876 3337777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCc-c-chhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038852 255 GFLNLGNLEKANELFDELKQRCLV-Y-DGVVNATFMEWWFNQGKDKEAMQSYKSLMER 310 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~~~~-~-d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 310 (851)
.+.+.++.+.|+.+|++.+..-.. . ...+|..+++.-.+.|+++.+.++.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888887765211 1 1245666666666666666666666555544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0012 Score=66.18 Aligned_cols=67 Identities=15% Similarity=0.263 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~ 242 (851)
..+...+..+...|++++|++.|++++...+..+- ..+...++.++.+.|++++|+..|++.++.-+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 33444555566667777777777776666544332 23455566666666666666666666666533
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0024 Score=64.07 Aligned_cols=191 Identities=19% Similarity=0.221 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH-HHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSN-TYRH 216 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~-~~~~ 216 (851)
...+-..+..+...|++++|++.|+.++......+- ......++.++.+.|++++|+..|++.++..|..+... ++..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 444555667788999999999999999877554333 34677889999999999999999999999988766542 2222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCC
Q 038852 217 LTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGK 296 (851)
Q Consensus 217 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~ 296 (851)
++.++... .... + ......+...+|+..|+.+++.-+. ...
T Consensus 85 ~g~~~~~~--~~~~---~-------------------~~~~D~~~~~~A~~~~~~li~~yP~---------------S~y 125 (203)
T PF13525_consen 85 LGLSYYKQ--IPGI---L-------------------RSDRDQTSTRKAIEEFEELIKRYPN---------------SEY 125 (203)
T ss_dssp HHHHHHHH--HHHH---H--------------------TT---HHHHHHHHHHHHHHHH-TT---------------STT
T ss_pred HHHHHHHh--Cccc---h-------------------hcccChHHHHHHHHHHHHHHHHCcC---------------chH
Confidence 22222211 1111 1 1111123345566666665554332 122
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHH
Q 038852 297 DKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEA 375 (851)
Q Consensus 297 ~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A 375 (851)
..+|...+..+.+.-- ..-..++..|.+.|.+..|+.-|+.+++.-..... ...+...|+.+|.+.|..+.+
T Consensus 126 ~~~A~~~l~~l~~~la----~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~---~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 126 AEEAKKRLAELRNRLA----EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPA---AEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHH---HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHHHHhCChHHH
Confidence 2233332222221100 11122566777778888888877777775322110 234556667777777766643
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.023 Score=64.55 Aligned_cols=171 Identities=13% Similarity=0.025 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCCCccCHHHHHHHHHHHHH----cCChHHHHHHHHHhccCCCCCCCc
Q 038852 318 TCNTLLEVLLKHEKKEEAQALFEQMLDNH-QPPNIQAVNSDTFNIMVNECFK----HGKFSEAIETFKKAGTHPKSKPFA 392 (851)
Q Consensus 318 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 392 (851)
.+..++....-.||-+.+++++.+..+.+ +.-.+...-...|+.++..++. ..+.+.|.++++.+....+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~---- 265 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPN---- 265 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCC----
Confidence 45557777778899999999999876632 1110000011223333333332 45678899999999877664
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHH
Q 038852 393 MDVAGYNNIIARYCENEMLEEAEKLLREISTKSL---SPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGT 469 (851)
Q Consensus 393 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 469 (851)
.......-.+.+...|++++|++.|++...... ......+.-++.++....++++|.+.|.++.+.+-.....++.
T Consensus 266 -s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y 344 (468)
T PF10300_consen 266 -SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAY 344 (468)
T ss_pred -cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHH
Confidence 444445556777789999999999997664210 1123455667778888999999999999999865443333333
Q ss_pred HHHHHHHHcCCH-------HHHHHHHHHHhh
Q 038852 470 KVFNELITKGKV-------AECAPILTKMGE 493 (851)
Q Consensus 470 ~L~~~~~~~g~~-------~~A~~ll~~m~~ 493 (851)
..+.++...|+. ++|.++|.++..
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 455667778887 888888887643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0045 Score=58.44 Aligned_cols=131 Identities=15% Similarity=0.160 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 038852 136 RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYR 215 (851)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~ 215 (851)
.|++..-..|..++.+.|++.+|...|.+.+. .-+.-|......+..+....+++..|...++++.+.++..-+.++..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 34444455566666666666666666666533 12233455555666666666666666666666665554433334555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 216 HLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELF 269 (851)
Q Consensus 216 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~ 269 (851)
.+.+.|...|++.+|...|+.++..-. +..........+.+.|+.++|..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~yp--g~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYP--GPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcchhHHHHHH
Confidence 556666666666666666666655432 2222223344445555555444433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.043 Score=62.47 Aligned_cols=337 Identities=12% Similarity=0.079 Sum_probs=179.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 179 NNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGR--IGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 179 ~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
..+|+-+...+.|..|+.+..-+-... .-+..+|...+..+++..+ -+++++.+++-+.... .+...|..+++..
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRA 517 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHH
Confidence 356677778888999988877663221 1124567777777776532 2344444444333322 3567788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCc----cchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCH
Q 038852 257 LNLGNLEKANELFDELKQRCLV----YDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKK 332 (851)
Q Consensus 257 ~~~g~~~~A~~~~~~~~~~~~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~ 332 (851)
...|+.+.|..+++.=...+.. .+..-+...+.-+.+.||.+....++..+...- + ....+....+.
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~------~---~s~l~~~l~~~ 588 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL------N---RSSLFMTLRNQ 588 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH------H---HHHHHHHHHhc
Confidence 8999999998887642221110 111122233333444555555554444443321 0 00111122334
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHH-h-ccCCCCCCCccCHHHHHHHHHHHHhcCC
Q 038852 333 EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKK-A-GTHPKSKPFAMDVAGYNNIIARYCENEM 410 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~-~-~~~~~~~~~~~d~~~~~~li~~~~~~g~ 410 (851)
-.|..+|.+..+..-. ..+-..| +.++...++..|.. . .......+..++ ......+|.+...
T Consensus 589 p~a~~lY~~~~r~~~~-----------~~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~ 653 (829)
T KOG2280|consen 589 PLALSLYRQFMRHQDR-----------ATLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKE 653 (829)
T ss_pred hhhhHHHHHHHHhhch-----------hhhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhh
Confidence 4566666665542111 1111222 22222222222221 1 000011111112 2233334443332
Q ss_pred HH---HH-------HHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcC
Q 038852 411 LE---EA-------EKLLREIST-KSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKG 479 (851)
Q Consensus 411 ~~---~A-------~~l~~~m~~-~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g 479 (851)
.. +| +.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.. -++..+|..-+.+++..+
T Consensus 654 ~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~ 729 (829)
T KOG2280|consen 654 KSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIK 729 (829)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhh
Confidence 11 11 122222221 1222222344445556677888888887765543 245556666778899999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 480 KVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLN 559 (851)
Q Consensus 480 ~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~ 559 (851)
++++-+++-+.+. ...-|.-++.+|.+.|+.++|.+++.++-.. ...+++|.+.|++.+|.++--
T Consensus 730 kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 730 KWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHH
Confidence 9998777766554 2445667899999999999999998876431 146778999999999987755
Q ss_pred hh
Q 038852 560 AD 561 (851)
Q Consensus 560 ~~ 561 (851)
+-
T Consensus 795 ~~ 796 (829)
T KOG2280|consen 795 EH 796 (829)
T ss_pred Hh
Confidence 43
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.083 Score=62.85 Aligned_cols=90 Identities=13% Similarity=0.007 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 038852 469 TKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKA 548 (851)
Q Consensus 469 ~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~ 548 (851)
...+.+|+..|..++...+|-+..+.+ .+...|..++......++ .++.+..+.... .-....+...++.+...
T Consensus 605 ~~a~lcYi~agsv~k~v~~w~~~~~~~--~~~~~y~~~~e~l~~~~~---~l~~~~~~~~~s-~~l~~~~~~yanllasQ 678 (1049)
T KOG0307|consen 605 SAAILCYICAGSVDKLVEIWLKALDLE--LAPTSYQDLAEDLMELTL---KLAQFSANKTYS-AGLAKKFSEYANLLASQ 678 (1049)
T ss_pred hhhhHHhhhccChhhhHHHHHHhcccc--cchHHHHHHHHHHHHHHh---hhhhcccCcccc-HHHHHHHHHHHHHHHhc
Confidence 446789999999999999999888764 345555555443322111 111111111100 00222333478888999
Q ss_pred CCHHHHHHHHHhhhhc
Q 038852 549 GRGEEIERVLNADRWG 564 (851)
Q Consensus 549 G~~~eA~~ll~~~~~~ 564 (851)
|.++.|..++..+..+
T Consensus 679 G~~~~A~~~l~~~~s~ 694 (1049)
T KOG0307|consen 679 GALAAAMSFLPLLPSG 694 (1049)
T ss_pred ChHHHHHhhcCcCccc
Confidence 9999999999987654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0023 Score=63.01 Aligned_cols=95 Identities=22% Similarity=0.319 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhccCCC-CCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHH
Q 038852 359 FNIMVNECFKHGKFSEAIETFKKAGTHPK-SKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKS---LSPDVTTFR 434 (851)
Q Consensus 359 ~~~L~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~pd~~~~~ 434 (851)
+..+.+++.+..++++|-..|.+-..... ...+.--...|...|..+....|+..|++++++--..+ -.-|..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 34444555566666665554443211100 00000012334555556666677778888777643321 112455666
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 038852 435 TLIDAYLKVERIDDALELFN 454 (851)
Q Consensus 435 ~Ll~~~~~~g~~~~A~~~~~ 454 (851)
.|+.+| ..|+.+++.+++.
T Consensus 233 nLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHh-ccCCHHHHHHHHc
Confidence 677665 4566666655543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0019 Score=73.92 Aligned_cols=120 Identities=10% Similarity=0.120 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCC
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA--------GRIGEAVDLLRDMLSRQ-LGADSLVYNNLISGFLNLGN 261 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~--------g~~~~A~~l~~~m~~~g-~~pd~~~~~~Li~~~~~~g~ 261 (851)
+++|+.+|+++++.+|. +...|..+..++... .++..+.+..+++.... ...+..+|..++..+...|+
T Consensus 358 ~~~A~~lle~Ai~ldP~--~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 358 LNKASDLLEEILKSEPD--FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence 55666666666666555 444555444433321 12334444444443321 22244556666666666677
Q ss_pred HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 038852 262 LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRM 314 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~ 314 (851)
+++|...|+++++.+. +...|..++.+|...|+.++|++.|+++...++..
T Consensus 436 ~~~A~~~l~rAl~L~p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 436 TDEAYQAINKAIDLEM--SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 7777777777666653 45566666666777777777777777766665443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.012 Score=59.30 Aligned_cols=192 Identities=10% Similarity=0.101 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 356 SDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRT 435 (851)
Q Consensus 356 ~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~ 435 (851)
...+..-+..-.+.|++++|.+.|+.+....+..++. ..+...++-++.+.+++++|+..+++.+..-......-|..
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~--~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS--EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc--HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 3444444555557888888888888887665554443 45556677777888888888888888776532222222333
Q ss_pred HHHHHHH-------cCCHH---HHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 038852 436 LIDAYLK-------VERID---DALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDV 505 (851)
Q Consensus 436 Ll~~~~~-------~g~~~---~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ 505 (851)
.|.+++. ..|.. .|+.-|++++..- |+.. -..+|...+..+.+. =...=..
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~-------------Ya~dA~~~i~~~~d~----LA~~Em~ 172 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSR-------------YAPDAKARIVKLNDA----LAGHEMA 172 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCc-------------chhhHHHHHHHHHHH----HHHHHHH
Confidence 3333322 12223 3334444444432 1111 111222222211110 0001123
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCC
Q 038852 506 VVRGLCNEGLFDMSKDIVDQMMKYGVGITP---ALQDFVRETFGKAGRGEEIERVLNADRWGYAAPV 569 (851)
Q Consensus 506 ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p 569 (851)
+.+-|.+.|.+..|..-+++|++. +..+. +.+..+.++|.+.|..++|.+.-+-+...+++.+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 566788889999999999998875 44333 3444578889999999999988888877777654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.041 Score=62.70 Aligned_cols=91 Identities=8% Similarity=0.050 Sum_probs=39.6
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKR--YDDAVALFKYFFDQADIVPNIVSYNNLIN 183 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~~~~~~~~~pd~~~~~~Li~ 183 (851)
+...++..++..+.|..|+++..-+-..... ...+|......+.+..+ -+++++.+++=+... ..+..+|..+++
T Consensus 439 ~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~--~~~~iSy~~iA~ 515 (829)
T KOG2280|consen 439 SEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK--LTPGISYAAIAR 515 (829)
T ss_pred chhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc--CCCceeHHHHHH
Confidence 3344555566666666666655443211111 13344444444443321 122222222211111 123345555555
Q ss_pred HHHHcCChHHHHHHHH
Q 038852 184 TYCDEGKVDEGMNVFR 199 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~ 199 (851)
....+|+.+-|..+++
T Consensus 516 ~Ay~~GR~~LA~kLle 531 (829)
T KOG2280|consen 516 RAYQEGRFELARKLLE 531 (829)
T ss_pred HHHhcCcHHHHHHHHh
Confidence 5556666666665554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.022 Score=60.25 Aligned_cols=130 Identities=12% Similarity=0.169 Sum_probs=65.8
Q ss_pred HHHHhCC-CHHHHHHHHHHHHHc--------CCCCCCCccCHHHHHHHHHHHHHcCChH---HHHHHHHHhccCCCCCCC
Q 038852 324 EVLLKHE-KKEEAQALFEQMLDN--------HQPPNIQAVNSDTFNIMVNECFKHGKFS---EAIETFKKAGTHPKSKPF 391 (851)
Q Consensus 324 ~~~~~~g-~~~~A~~l~~~m~~~--------~~~p~~~~~~~~~~~~L~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~ 391 (851)
......+ ++++|...++++.+. ...++.......++..++.+|...+..+ +|.++++.+....+.
T Consensus 43 ~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~--- 119 (278)
T PF08631_consen 43 KSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN--- 119 (278)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC---
Confidence 3333444 666666666655442 1111111123345666777777766644 444555555433333
Q ss_pred ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHc
Q 038852 392 AMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLK--VERIDDALELFNRMVES 459 (851)
Q Consensus 392 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~--~g~~~~A~~~~~~m~~~ 459 (851)
....+..-++.+.+.++.+++.+++.+|+.. +.-....+..++..+.. ......|...++.++..
T Consensus 120 --~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 120 --KPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred --CcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 3444555566666677788888888888765 22122334433333311 12234555555555543
|
It is also involved in sporulation []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0015 Score=66.97 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHH
Q 038852 192 DEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG---NLEKANEL 268 (851)
Q Consensus 192 ~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g---~~~~A~~~ 268 (851)
++.+.-++.-+..+|. |...|..|+.+|...|+++.|+..|+++.+...+ +...+..++.++.... +..++.++
T Consensus 139 ~~l~a~Le~~L~~nP~--d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 139 EALIARLETHLQQNPG--DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 3334444555555655 6677777777777777777777777777776444 6666666666554432 35566777
Q ss_pred HHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 038852 269 FDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF 312 (851)
Q Consensus 269 ~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 312 (851)
|+++++.+.. |......|...++..|++.+|...++.|++...
T Consensus 216 l~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 216 LRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 7777766555 666666666666666666666666666666544
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.24 Score=58.73 Aligned_cols=163 Identities=12% Similarity=0.190 Sum_probs=79.4
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-C--HHHHH
Q 038852 109 NRVQSLI-RAGDLDAASYLARQAVFSRIRPTVF-----TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVP-N--IVSYN 179 (851)
Q Consensus 109 ~ll~~l~-~~g~~~~A~~l~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~p-d--~~~~~ 179 (851)
.++..|+ ...++++|+..+++.+...-+.+.. .-..++..+.+.+... |+..+++.++...... + ...|.
T Consensus 64 ~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~fr 142 (608)
T PF10345_consen 64 RLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFR 142 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHH
Confidence 4444444 5567788887777765433222211 1123344444444444 7777777665432211 1 12222
Q ss_pred HH-HHHHHHcCChHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCC---------CC
Q 038852 180 NL-INTYCDEGKVDEGMNVFRRIIETAP--VGPSSNTYRHLTKGFV--DAGRIGEAVDLLRDMLSRQLG---------AD 245 (851)
Q Consensus 180 ~L-i~~~~~~g~~~~A~~l~~~~~~~~~--~~p~~~~~~~Li~~~~--~~g~~~~A~~l~~~m~~~g~~---------pd 245 (851)
.+ +..+...+|+..|++.++.+..... ..+...++..++.+.. +.+..+++++.++++...... +-
T Consensus 143 ll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~q 222 (608)
T PF10345_consen 143 LLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQ 222 (608)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHH
Confidence 22 2222233677777777777765542 2222333333444333 345556666666666432211 12
Q ss_pred HHHHHHHHHHH--HhcCCHHHHHHHHHHH
Q 038852 246 SLVYNNLISGF--LNLGNLEKANELFDEL 272 (851)
Q Consensus 246 ~~~~~~Li~~~--~~~g~~~~A~~~~~~~ 272 (851)
..+|..+++.+ ...|+++.+...++++
T Consensus 223 L~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 223 LKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555544 3456665665555544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00022 Score=57.59 Aligned_cols=64 Identities=23% Similarity=0.442 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG-RIGEAVDLLRDMLSR 240 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g-~~~~A~~l~~~m~~~ 240 (851)
..+|..++..+...|++++|+..|+++++.++. +..+|..++.+|...| ++++|++.|+++++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~--~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN--NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 344555555555555555555555555555444 4455555555555555 455555555555543
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0041 Score=71.19 Aligned_cols=137 Identities=12% Similarity=0.067 Sum_probs=101.4
Q ss_pred CCHHHHHHHHHHHHH--cC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhc
Q 038852 209 PSSNTYRHLTKGFVD--AG---RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL--------GNLEKANELFDELKQR 275 (851)
Q Consensus 209 p~~~~~~~Li~~~~~--~g---~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~--------g~~~~A~~~~~~~~~~ 275 (851)
.|..+|...+++... .+ ++++|+++|+++++..+. +...|..+..+|... +++..+.+..++....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 366777777766543 32 378999999999998766 666776665555432 1244555555554443
Q ss_pred C-CccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 038852 276 C-LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQP 348 (851)
Q Consensus 276 ~-~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~ 348 (851)
. ...+..++..+...+...|++++|...|+++++.+. +...|..++.++...|+.++|++.|+++...+..
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 2 223557788887778888999999999999999884 6789999999999999999999999999885443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.028 Score=58.01 Aligned_cols=158 Identities=12% Similarity=0.091 Sum_probs=112.5
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C--CCCCHHHHHHHHHHHHhcCC
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR-Q--LGADSLVYNNLISGFLNLGN 261 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~-g--~~pd~~~~~~Li~~~~~~g~ 261 (851)
+...|++.+|...++++++..|. |..++...=.+|..+|+.+.-...+++++.. + +.-...+...+.-++..+|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~Pt--Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPT--DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhCch--hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34568888888899999887665 8888888888889999999888888888765 2 22123333445556678899
Q ss_pred HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCCHHHHHHH
Q 038852 262 LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR---MTPATCNTLLEVLLKHEKKEEAQAL 338 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~---~~~~~~~~Li~~~~~~g~~~~A~~l 338 (851)
+++|++.-++.++.+.. |......+..++...|+++++.++..+-...=-. .-...|-.....+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999998887765 7777778888888899999998887654321000 0011233344556677899999999
Q ss_pred HHHHHHc
Q 038852 339 FEQMLDN 345 (851)
Q Consensus 339 ~~~m~~~ 345 (851)
|++-+-.
T Consensus 270 yD~ei~k 276 (491)
T KOG2610|consen 270 YDREIWK 276 (491)
T ss_pred HHHHHHH
Confidence 9875543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0077 Score=59.42 Aligned_cols=213 Identities=14% Similarity=0.161 Sum_probs=110.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038852 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFL 257 (851)
Q Consensus 178 ~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~ 257 (851)
|.-...+|....++++|...+.++.+.... |. .|-..+ ..++.|.-+.+++.+..- -+..|+....+|.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEn--nr-slfhAA------KayEqaamLake~~klsE--vvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYEN--NR-SLFHAA------KAYEQAAMLAKELSKLSE--VVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHh--cc-cHHHHH------HHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHH
Confidence 444455566667777777766666543211 11 111122 223444444444443310 1234555566677
Q ss_pred hcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhCCCH
Q 038852 258 NLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF-----RMTPATCNTLLEVLLKHEKK 332 (851)
Q Consensus 258 ~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-----~~~~~~~~~Li~~~~~~g~~ 332 (851)
..|..+.|-..++++-+. .+..+.++|+.+|.+.+..-. ..-...+..+.++|++..++
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 777777666666655431 223344445555544332110 01113345556667777777
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHH
Q 038852 333 EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLE 412 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 412 (851)
++|-..|.+-......-+....--..|...+.+|....++..|.++|+.....+.. .-.-|..+...|+.+|- .||.+
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f-~~sed~r~lenLL~ayd-~gD~E 244 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAF-LKSEDSRSLENLLTAYD-EGDIE 244 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccc-cChHHHHHHHHHHHHhc-cCCHH
Confidence 77666555432211100000002235677777888888999999999985443222 11226777888887764 67777
Q ss_pred HHHHHHH
Q 038852 413 EAEKLLR 419 (851)
Q Consensus 413 ~A~~l~~ 419 (851)
++.+++.
T Consensus 245 ~~~kvl~ 251 (308)
T KOG1585|consen 245 EIKKVLS 251 (308)
T ss_pred HHHHHHc
Confidence 7666543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0039 Score=68.59 Aligned_cols=120 Identities=14% Similarity=0.257 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 038852 245 DSLVYNNLISGFLNLGNLEKANELFDELKQR--CLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTL 322 (851)
Q Consensus 245 d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~--~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~L 322 (851)
+......+++.+....+++.++.++-+.... +...-..+..++++.|.+.|..++++++++.=+..|+-+|..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4555555666666666666666666665543 22222334456666677777777777777666666776777777777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHc
Q 038852 323 LEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH 369 (851)
Q Consensus 323 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~ 369 (851)
+..+.+.|++..|.+++..|...+... +..++...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~-----~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFD-----NPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccC-----CchHHHHHHHHHHHh
Confidence 777777777777777766665544332 344444444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.016 Score=58.30 Aligned_cols=64 Identities=20% Similarity=0.221 Sum_probs=45.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCC
Q 038852 321 TLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPK 387 (851)
Q Consensus 321 ~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~ 387 (851)
.+++.|.+.|.+..|..-+++|++.-..- ......+..|..+|...|..++|.+.-.-+....+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t---~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDT---SAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccc---cchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 36777888888888888888888752221 11345677788888888888888777666654433
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.014 Score=63.01 Aligned_cols=173 Identities=16% Similarity=0.120 Sum_probs=114.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHH
Q 038852 355 NSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCE---NEMLEEAEKLLREISTKSLSPDVT 431 (851)
Q Consensus 355 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~ 431 (851)
+..+...++..|....+++..+++++.+...+... +.-...+-..++-++.+ .|+.++|++++..++.....++..
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCD-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccc-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 55667778888999999999999999886653222 22233334455666777 899999999999866666667888
Q ss_pred HHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCC-HH---HHHHHH----HHHhhC
Q 038852 432 TFRTLIDAYLK---------VERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGK-VA---ECAPIL----TKMGEK 494 (851)
Q Consensus 432 ~~~~Ll~~~~~---------~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~-~~---~A~~ll----~~m~~~ 494 (851)
+|..++..|.. ....++|+..|.+..+... ....-.| ++..+...|. ++ +..++- ..+.++
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN-~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGIN-AATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHH-HHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 89888887743 2347889999999888652 1111112 2233333443 22 222222 112223
Q ss_pred C---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038852 495 D---PKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG 530 (851)
Q Consensus 495 ~---~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g 530 (851)
| -..|...+.+++.++.-.|++++|...+++|.+..
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 3 23466677788999999999999999999999763
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0024 Score=65.53 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHH
Q 038852 157 DAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG---RIGEAVDL 233 (851)
Q Consensus 157 ~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g---~~~~A~~l 233 (851)
+.+.-++.-+..+. -|+..|..|+.+|...|+++.|...|.++.+..|. |...+..++.++.... +..++.++
T Consensus 140 ~l~a~Le~~L~~nP--~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 140 ALIARLETHLQQNP--GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 33334444444332 47888999999999999999999999999999877 6667777777776543 46789999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 038852 234 LRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLV 278 (851)
Q Consensus 234 ~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~ 278 (851)
|+++++.+.. |..+...|...+...|++.+|...|+.|++....
T Consensus 216 l~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 216 LRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 9999998766 8888888999999999999999999999987554
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.076 Score=60.33 Aligned_cols=159 Identities=13% Similarity=0.107 Sum_probs=78.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc---------C--C-----hHHHHHHHHHHHHhCCC
Q 038852 144 AIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDE---------G--K-----VDEGMNVFRRIIETAPV 207 (851)
Q Consensus 144 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~---------g--~-----~~~A~~l~~~~~~~~~~ 207 (851)
.+-..|+..|+|++|+++--..-....+.++...+.+++.-|... + . -++-..++++|+.+.-.
T Consensus 64 ~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~ 143 (929)
T KOG2062|consen 64 LASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLD 143 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhh
Confidence 344567888999999988665533444555555555554433322 1 0 22344555555554311
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCccchhhHH
Q 038852 208 GPSSNTYRHLTKGFVDAGRIGEAVDLLRDM-LSRQLGADSLVYNNLISGFLNLGN-LEKANELFDELKQRCLVYDGVVNA 285 (851)
Q Consensus 208 ~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m-~~~g~~pd~~~~~~Li~~~~~~g~-~~~A~~~~~~~~~~~~~~d~~~~~ 285 (851)
+...+ .+|.......+ +++++++ ++.+. +....+.++..+....+ .+--.++++.+++.-......-|.
T Consensus 144 --d~e~~-~aiGia~E~~r----ld~ie~Ail~~d~--~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~ 214 (929)
T KOG2062|consen 144 --DNEYK-QAIGIAFETRR----LDIIEEAILKSDS--VIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYF 214 (929)
T ss_pred --hhHHH-HHHhHHhhhhh----HHHHHHHhccccc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCee
Confidence 22222 22222222222 2333332 22221 22234444554444433 333444555444432222223345
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhc
Q 038852 286 TFMEWWFNQGKDKEAMQSYKSLMERN 311 (851)
Q Consensus 286 ~li~~~~~~g~~~~A~~l~~~~~~~~ 311 (851)
.+..+|.-..+.+.+.++++++.+.+
T Consensus 215 ~vc~c~v~Ldd~~~va~ll~kL~~e~ 240 (929)
T KOG2062|consen 215 SVCQCYVFLDDAEAVADLLEKLVKED 240 (929)
T ss_pred eeeeeeEEcCCHHHHHHHHHHHHhcc
Confidence 56677777888888888888888754
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.056 Score=57.14 Aligned_cols=159 Identities=18% Similarity=0.211 Sum_probs=87.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC--CCCH-----HHHHHHHHHHHHcC-ChhHHHHHHHHHHHc----C---CCCCC----
Q 038852 114 LIRAGDLDAASYLARQAVFSRI--RPTV-----FTCNAIIAAMYRAK-RYDDAVALFKYFFDQ----A---DIVPN---- 174 (851)
Q Consensus 114 l~~~g~~~~A~~l~~~~~~~~~--~~~~-----~~~~~li~~~~~~g-~~~~A~~l~~~~~~~----~---~~~pd---- 174 (851)
..+.|+++.|..++.++..... .|+. ..+..++....+.+ ++++|..++++..+. . ...++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 3567899999988888765331 2221 12222333344556 888888888877553 1 11222
Q ss_pred -HHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 038852 175 -IVSYNNLINTYCDEGKV---DEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYN 250 (851)
Q Consensus 175 -~~~~~~Li~~~~~~g~~---~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~ 250 (851)
..++..|+.+|...+.. ++|.++++.+....+.. ..++..-++++.+.++.+++.+++.+|+..-.. ....+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~ 159 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHH
Confidence 23556677777766654 34555666665554442 335545566666677788888888887765221 223333
Q ss_pred HHHHHHHhc--CCHHHHHHHHHHHHhc
Q 038852 251 NLISGFLNL--GNLEKANELFDELKQR 275 (851)
Q Consensus 251 ~Li~~~~~~--g~~~~A~~~~~~~~~~ 275 (851)
.++..+... ...+.|...++.++..
T Consensus 160 ~~l~~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 160 SILHHIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 333333211 2234455555555443
|
It is also involved in sporulation []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.012 Score=67.64 Aligned_cols=142 Identities=17% Similarity=0.148 Sum_probs=92.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 038852 111 VQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK 190 (851)
Q Consensus 111 l~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~ 190 (851)
..-|.+.|++++|..-+-+.+.. +++ ..+|.-|....+..+-..+++.+.+. |+. +...-..|+.+|.+.++
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~-gla-~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKK-GLA-NSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHc-ccc-cchhHHHHHHHHHHhcc
Confidence 44567889999999888876622 122 23455556666777777777777553 432 33445679999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFD 270 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~ 270 (851)
.++-.++.+... .+-. ..-....+..+.+.+-.++|..+-.+... +... +-..+-..+++++|++++.
T Consensus 447 ~~kL~efI~~~~-~g~~---~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~v---l~ille~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 447 VEKLTEFISKCD-KGEW---FFDVETALEILRKSNYLDEAELLATKFKK-----HEWV---LDILLEDLHNYEEALRYIS 514 (933)
T ss_pred hHHHHHHHhcCC-Ccce---eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHH---HHHHHHHhcCHHHHHHHHh
Confidence 998887776653 2211 11244567778888888888766554432 2333 3334456789999999887
Q ss_pred HH
Q 038852 271 EL 272 (851)
Q Consensus 271 ~~ 272 (851)
.+
T Consensus 515 sl 516 (933)
T KOG2114|consen 515 SL 516 (933)
T ss_pred cC
Confidence 65
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.22 Score=54.20 Aligned_cols=416 Identities=11% Similarity=0.022 Sum_probs=216.7
Q ss_pred HHHHHHHcC--ChhHHHHHHHHHHHcCCCC--CCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCCCC-----HHHH
Q 038852 145 IIAAMYRAK--RYDDAVALFKYFFDQADIV--PNIVSYNNLINTY-CDEGKVDEGMNVFRRIIETAPVGPS-----SNTY 214 (851)
Q Consensus 145 li~~~~~~g--~~~~A~~l~~~~~~~~~~~--pd~~~~~~Li~~~-~~~g~~~~A~~l~~~~~~~~~~~p~-----~~~~ 214 (851)
+...+...| ++..+++.++.++.- .+. ..+.+..-|+..+ .-..+++.|..-++++......-|+ ..++
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~-~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~ 91 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQF-QISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAA 91 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHH
Confidence 344444556 677788887766431 110 1123333333333 3346788888887776544322222 2467
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHhcCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHH--
Q 038852 215 RHLTKGFVDAG-RIGEAVDLLRDMLSRQLG-A--DSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFM-- 288 (851)
Q Consensus 215 ~~Li~~~~~~g-~~~~A~~l~~~m~~~g~~-p--d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li-- 288 (851)
..|..+|.... .+..+..+++++++..-. | ......-|+....-..|+..|.+++.--.+.. .+-...|..++
T Consensus 92 SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sA-d~~~~~ylr~~ft 170 (629)
T KOG2300|consen 92 SLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESA-DHICFPYLRMLFT 170 (629)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcccccc-chhhhHHHHHHHH
Confidence 78888888877 888999999999875322 1 11233446777778889999988854321111 00111121111
Q ss_pred ----HHHHHcCCH---HHHHHHHHHHHHhcCCCCHH--------HHHHHHHHHHhCCCHHHHHHHHHHHHH---cCCCCC
Q 038852 289 ----EWWFNQGKD---KEAMQSYKSLMERNFRMTPA--------TCNTLLEVLLKHEKKEEAQALFEQMLD---NHQPPN 350 (851)
Q Consensus 289 ----~~~~~~g~~---~~A~~l~~~~~~~~~~~~~~--------~~~~Li~~~~~~g~~~~A~~l~~~m~~---~~~~p~ 350 (851)
.......|. +.+......+.+.. ..|.. ..+.-+.-|...|+...+...++.+.+ .+..++
T Consensus 171 ls~~~ll~me~d~~dV~~ll~~~~qi~~n~-~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~ 249 (629)
T KOG2300|consen 171 LSMLMLLIMERDDYDVEKLLQRCGQIWQNI-SSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSS 249 (629)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCC
Confidence 112222333 34444444454432 22221 112223345566777777776665543 222210
Q ss_pred C------C-ccCHHH-------------HHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCcc-CHHHH--------HHH
Q 038852 351 I------Q-AVNSDT-------------FNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAM-DVAGY--------NNI 401 (851)
Q Consensus 351 ~------~-~~~~~~-------------~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-d~~~~--------~~l 401 (851)
. . ...... |......-.-.|-+++|.++-++++.......-.+ +..++ ..+
T Consensus 250 ~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~i 329 (629)
T KOG2300|consen 250 RGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHI 329 (629)
T ss_pred CCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 0 0 001111 11111111234556666665555433211111111 12222 222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCC--H------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc--chhHHHH
Q 038852 402 IARYCENEMLEEAEKLLREISTKSL-SPD--V------TTFRTLIDAYLKVERIDDALELFNRMVESGLRV--VVSFGTK 470 (851)
Q Consensus 402 i~~~~~~g~~~~A~~l~~~m~~~g~-~pd--~------~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~ 470 (851)
+.+-.-.|++.+|++-+.+|.+... .|. . .....++-.++..+.++.|+.-|..+.+.-... .......
T Consensus 330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nln 409 (629)
T KOG2300|consen 330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLN 409 (629)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 2233348999999999998876421 122 1 122334445566788999999999888753322 2333345
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCC-CHHHH---HHHHHH--HHhcCChHHHHHHHHHHHHcCCCCC-----HHHHH
Q 038852 471 VFNELITKGKVAECAPILTKMGEKDPKP-DFLIY---DVVVRG--LCNEGLFDMSKDIVDQMMKYGVGIT-----PALQD 539 (851)
Q Consensus 471 L~~~~~~~g~~~~A~~ll~~m~~~~~~p-d~~~~---~~ll~a--~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~ 539 (851)
++..|.+.|+-++-.++++.+--.+-.+ ..... ..++.+ ....+++.+|..++.+.++..-..| .-...
T Consensus 410 lAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~Lv 489 (629)
T KOG2300|consen 410 LAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLV 489 (629)
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Confidence 6778889888888777777664332111 11100 112222 2467999999999999876431111 11122
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhh
Q 038852 540 FVRETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 540 ~L~~~~~~~G~~~eA~~ll~~~~~ 563 (851)
.|..++...|+..|+.+.+.-...
T Consensus 490 LLs~v~lslgn~~es~nmvrpamq 513 (629)
T KOG2300|consen 490 LLSHVFLSLGNTVESRNMVRPAMQ 513 (629)
T ss_pred HHHHHHHHhcchHHHHhccchHHH
Confidence 366677788998888887765443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00041 Score=56.01 Aligned_cols=65 Identities=20% Similarity=0.373 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhc
Q 038852 210 SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG-NLEKANELFDELKQR 275 (851)
Q Consensus 210 ~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g-~~~~A~~~~~~~~~~ 275 (851)
+..+|..++..+...|++++|+..|+++++.+.. +..+|..++.+|.+.| ++++|++.|+++++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4456777777777777777777777777776554 6667777777777777 577777777766654
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0041 Score=56.05 Aligned_cols=91 Identities=20% Similarity=0.234 Sum_probs=41.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHH
Q 038852 289 EWWFNQGKDKEAMQSYKSLMERNFRMT--PATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNEC 366 (851)
Q Consensus 289 ~~~~~~g~~~~A~~l~~~~~~~~~~~~--~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~ 366 (851)
.++-..|+.++|+.+|++.+..|.... ...+..+...|...|++++|+.+|++.+........ +......+..++
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~---~~~l~~f~Al~L 85 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL---NAALRVFLALAL 85 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc---cHHHHHHHHHHH
Confidence 334444444444444444444443222 123444555555566666666666555543211100 222333334455
Q ss_pred HHcCChHHHHHHHHHh
Q 038852 367 FKHGKFSEAIETFKKA 382 (851)
Q Consensus 367 ~~~g~~~~A~~~~~~~ 382 (851)
...|+.++|++++-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 5556666655555443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.31 Score=55.53 Aligned_cols=167 Identities=18% Similarity=0.138 Sum_probs=109.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCC-----HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCCCc
Q 038852 284 NATFMEWWFNQGKDKEAMQSYKSLMERN-FRMT-----PATCNTLLEVLLK----HEKKEEAQALFEQMLDNHQPPNIQA 353 (851)
Q Consensus 284 ~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~~~-----~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~ 353 (851)
+..++....-.||-+.+++++.+..+.+ +.-. ...|..++..++. ..+.+.|.++++.+... -|+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~--- 265 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPN--- 265 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCC---
Confidence 3344555555688888888888766532 2111 1223333433333 45688999999999885 342
Q ss_pred cCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038852 354 VNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTF 433 (851)
Q Consensus 354 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 433 (851)
........++.+...|++++|++.|+++...... --......+..++.++....++++|.+.|.++.+..-- ...+|
T Consensus 266 -s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y 342 (468)
T PF10300_consen 266 -SALFLFFEGRLERLKGNLEEAIESFERAIESQSE-WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFY 342 (468)
T ss_pred -cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh-HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHH
Confidence 4455566678889999999999999987642111 11223455667777888899999999999999875322 33344
Q ss_pred HH-HHHHHHHcCCH-------HHHHHHHHHHHH
Q 038852 434 RT-LIDAYLKVERI-------DDALELFNRMVE 458 (851)
Q Consensus 434 ~~-Ll~~~~~~g~~-------~~A~~~~~~m~~ 458 (851)
.. .+.++...++. ++|.++|.++..
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 33 34455567777 888888888764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0063 Score=57.47 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=105.1
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
.+-..+..++.+.|++.+|+..|++.+..-..-|......+..+....+++.+|...++++.+...-.....+...+.+.
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 35567889999999999999999998866566788888899999999999999999999998765433344456778899
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS 239 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 239 (851)
|...|++++|+..|+.++... |+...-......+.+.|+.+++..-+.++.+
T Consensus 170 laa~g~~a~Aesafe~a~~~y---pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 170 LAAQGKYADAESAFEVAISYY---PGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHhcCCchhHHHHHHHHHHhC---CCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 999999999999999998864 3444444455667888888877666555544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0025 Score=66.25 Aligned_cols=91 Identities=18% Similarity=0.269 Sum_probs=43.4
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCH
Q 038852 150 YRAKRYDDAVALFKYFFDQADIVP-NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGP-SSNTYRHLTKGFVDAGRI 227 (851)
Q Consensus 150 ~~~g~~~~A~~l~~~~~~~~~~~p-d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p-~~~~~~~Li~~~~~~g~~ 227 (851)
.+.|++++|+..|+.+++...-.+ ...++..++.+|...|++++|+..|+++++..+..+ ...++..++.++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344555555555555554432111 012344455555555555555555555554433321 123344444455555555
Q ss_pred HHHHHHHHHHHhc
Q 038852 228 GEAVDLLRDMLSR 240 (851)
Q Consensus 228 ~~A~~l~~~m~~~ 240 (851)
++|.++|+++++.
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.059 Score=55.69 Aligned_cols=159 Identities=13% Similarity=0.090 Sum_probs=118.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-C--CccchhhHHHHHHHHHHcCC
Q 038852 220 GFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQR-C--LVYDGVVNATFMEWWFNQGK 296 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~-~--~~~d~~~~~~li~~~~~~g~ 296 (851)
.+...|++.+|...++++++.-+. |...+.-.-++|...|+.+.-+..+++++.. + ......+...+.-++..+|-
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 345678999999999999987555 8888888889999999999999999988764 2 22234445556666788999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHH
Q 038852 297 DKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAI 376 (851)
Q Consensus 297 ~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~ 376 (851)
+++|++.-++.++.+. .|.-.-.++...+...|++.++.+++.+-.+.-... ...-...|-..+..+...+.++.|+
T Consensus 191 y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s--~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 191 YDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS--WMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred chhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh--hHHHhhhhHHHHHhhhcccchhHHH
Confidence 9999999999998874 455566678888889999999999887654321110 0001234555666777889999999
Q ss_pred HHHHHh
Q 038852 377 ETFKKA 382 (851)
Q Consensus 377 ~~~~~~ 382 (851)
++|+.-
T Consensus 268 eIyD~e 273 (491)
T KOG2610|consen 268 EIYDRE 273 (491)
T ss_pred HHHHHH
Confidence 999864
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.17 Score=59.33 Aligned_cols=233 Identities=15% Similarity=0.125 Sum_probs=126.8
Q ss_pred HHHcCChHHHHHHHHHHHHhCCC---CCCH---HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC----CCCCHHHHHHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPV---GPSS---NTYRHLT-KGFVDAGRIGEAVDLLRDMLSRQ----LGADSLVYNNLI 253 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~---~p~~---~~~~~Li-~~~~~~g~~~~A~~l~~~m~~~g----~~pd~~~~~~Li 253 (851)
.....++++|..+++++...-+. .+.. ..|+.|- .+....|++++|+++.+..+..- .......+..++
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888888888887654322 1111 1333332 23445788899998888877642 223556777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHH-----HHHHHcCC--HHHHHHHHHHHHHhcC---CC---CHHHHH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFM-----EWWFNQGK--DKEAMQSYKSLMERNF---RM---TPATCN 320 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li-----~~~~~~g~--~~~A~~l~~~~~~~~~---~~---~~~~~~ 320 (851)
.+..-.|++++|..+.....+.....|...+..++ ..+...|. +.+.+..|........ .. -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888899999998888777654444444443332 34566673 3333444444333211 11 112333
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccC-HHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHH
Q 038852 321 TLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVN-SDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYN 399 (851)
Q Consensus 321 ~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~-~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~ 399 (851)
.++.++.+ ++.+..-.....+.+..-.....+ ...+..|+.++...|+.++|...++++...........+..+-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 34444444 444433333332222111000001 11234678888899999999998888765544433333443333
Q ss_pred HHHHH--HHhcCCHHHHHHHHHH
Q 038852 400 NIIAR--YCENEMLEEAEKLLRE 420 (851)
Q Consensus 400 ~li~~--~~~~g~~~~A~~l~~~ 420 (851)
.++.+ ....|+.++|.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 33333 2346777777776655
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.42 Score=55.53 Aligned_cols=131 Identities=10% Similarity=0.129 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---HcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMY---RAKRYDDAVALFKYFFDQADIVPNIVSYNNLIN 183 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~ 183 (851)
...+|..+.+.|++++....-..|...- +.+...|...+.... ..++..++..+|++.+.... ++..|.-.+.
T Consensus 116 ~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~---~v~iw~e~~~ 191 (881)
T KOG0128|consen 116 MVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN---SVPIWEEVVN 191 (881)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc---cchHHHHHHH
Confidence 3456666667777766555444444322 334444443333322 23666677777777654332 3333433333
Q ss_pred HH-------HHcCChHHHHHHHHHHHHhCCCCCC--HHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 038852 184 TY-------CDEGKVDEGMNVFRRIIETAPVGPS--SNTY---RHLTKGFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 184 ~~-------~~~g~~~~A~~l~~~~~~~~~~~p~--~~~~---~~Li~~~~~~g~~~~A~~l~~~m~~~g 241 (851)
.+ .+.++++....+|+++++.-+...+ ...| ..+-..|..+-..+..+.+|..-+..+
T Consensus 192 y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 192 YLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP 261 (881)
T ss_pred HHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 22 2335666777777777665433211 1122 222233334444455666666665554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00048 Score=54.90 Aligned_cols=56 Identities=27% Similarity=0.455 Sum_probs=24.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 147 AAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 147 ~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
..+.+.|++++|+++|+++++..+ -+...|..++.++...|++++|+.+|+++++.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDP--DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCST--THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444443221 13334444444444444444444444444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.003 Score=59.29 Aligned_cols=92 Identities=15% Similarity=0.079 Sum_probs=60.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
..+.-+...|++++|..+|.-+...++. |...|..|+.++-..+++++|+.+|..+...+.. |...+..++.+|...
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l 118 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHh
Confidence 3344455667777777777776666555 5556667777777777777777777766665543 555555667777777
Q ss_pred CCHHHHHHHHHHHHh
Q 038852 260 GNLEKANELFDELKQ 274 (851)
Q Consensus 260 g~~~~A~~~~~~~~~ 274 (851)
|+.+.|+..|..+++
T Consensus 119 ~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 119 RKAAKARQCFELVNE 133 (165)
T ss_pred CCHHHHHHHHHHHHh
Confidence 777777777766665
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0077 Score=54.28 Aligned_cols=92 Identities=24% Similarity=0.276 Sum_probs=43.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc--cchhhHHHHHHHHH
Q 038852 217 LTKGFVDAGRIGEAVDLLRDMLSRQLGAD--SLVYNNLISGFLNLGNLEKANELFDELKQRCLV--YDGVVNATFMEWWF 292 (851)
Q Consensus 217 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~--~d~~~~~~li~~~~ 292 (851)
+..++-..|+.++|+.+|++.++.|+..+ ...+..+...|...|++++|+.+|++....... .+..+...+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34444555555555555555555554422 134444555555555555555555555543211 11222222333445
Q ss_pred HcCCHHHHHHHHHHHH
Q 038852 293 NQGKDKEAMQSYKSLM 308 (851)
Q Consensus 293 ~~g~~~~A~~l~~~~~ 308 (851)
..|+.++|++.+-..+
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555554433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.018 Score=62.85 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 399 NNIIARYCENEMLEEAEKLLREISTKSLS-PDVTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 399 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
..|..++-+.|+.+||++.|++|.+.... .+..+...|+.++...+.+.++..++.+.-+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44555556667777777777776653211 1233555666677777777777766666543
|
The molecular function of this protein is uncertain. |
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.46 Score=55.18 Aligned_cols=401 Identities=7% Similarity=-0.027 Sum_probs=197.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH---HcCChHHHHHHHHHHHHhCCCCCCHH
Q 038852 136 RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYC---DEGKVDEGMNVFRRIIETAPVGPSSN 212 (851)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~---~~g~~~~A~~l~~~~~~~~~~~p~~~ 212 (851)
..+...++.||..+.+.|++++....-..|.+...+ +...|...+.... ..++..++.++|++.+... . ++.
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl--~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~--~v~ 184 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPL--PPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-N--SVP 184 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-c--cch
Confidence 345677888999999999998766665555443333 3445655444333 3377888889999887643 2 444
Q ss_pred HHHHHHHHHH-------HcCCHHHHHHHHHHHHhc-CCCC--CHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhcCCcc
Q 038852 213 TYRHLTKGFV-------DAGRIGEAVDLLRDMLSR-QLGA--DSLVYNN---LISGFLNLGNLEKANELFDELKQRCLVY 279 (851)
Q Consensus 213 ~~~~Li~~~~-------~~g~~~~A~~l~~~m~~~-g~~p--d~~~~~~---Li~~~~~~g~~~~A~~~~~~~~~~~~~~ 279 (851)
.|...+..+. ..++++....+|.++++. |... -...|.. +-..|...-..+....+|..-+....
T Consensus 185 iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~-- 262 (881)
T KOG0128|consen 185 IWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPL-- 262 (881)
T ss_pred HHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccc--
Confidence 5555555444 346678888888887763 2111 1122322 22333444444566666666555442
Q ss_pred chhhHHHHHHHHH-------HcCCHHHHHHHHHHH-------HHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038852 280 DGVVNATFMEWWF-------NQGKDKEAMQSYKSL-------MERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 280 d~~~~~~li~~~~-------~~g~~~~A~~l~~~~-------~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 345 (851)
|..+...-+.-.. ...+++.+.+-+.+. ..... .-...|..+++.+.+.|+.-....++++++..
T Consensus 263 D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~-~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E 341 (881)
T KOG0128|consen 263 DEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEP-IKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE 341 (881)
T ss_pred hhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 2222221111111 122333333332222 22211 11245666777778888877777777777654
Q ss_pred CCCCCCCccCHHHHHHHHHHHH-HcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 038852 346 HQPPNIQAVNSDTFNIMVNECF-KHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEML-EEAEKLLREIST 423 (851)
Q Consensus 346 ~~~p~~~~~~~~~~~~L~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~-~~A~~l~~~m~~ 423 (851)
... +...|.......- ..+-.+.+...+.++....+- ....|...+.++.+.+.. ......|...+.
T Consensus 342 ~~~------~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~-----tgdL~~rallAleR~re~~~vI~~~l~~~ls 410 (881)
T KOG0128|consen 342 MVL------DRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPW-----TGDLWKRALLALERNREEITVIVQNLEKDLS 410 (881)
T ss_pred ccc------cHHHHhhhhhhcccccccccccccccchhhcCCch-----HHHHHHHHHHHHHhcCcchhhHHHHHHHHHH
Confidence 322 2222222111100 011111122222222211111 223333333333333321 112222222222
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHHcCCccchhHHHHHHHHH-HHcCCHHHHHHHHH
Q 038852 424 KSLSPDVTTFRTLIDAYLKVE-------------RIDDALELFNRMVESGLRVVVSFGTKVFNEL-ITKGKVAECAPILT 489 (851)
Q Consensus 424 ~g~~pd~~~~~~Ll~~~~~~g-------------~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~-~~~g~~~~A~~ll~ 489 (851)
.++. .++..+..+.+++ .+..|...|.............+.......+ .-.++.+.|..+|+
T Consensus 411 ~~~~----l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn 486 (881)
T KOG0128|consen 411 MTVE----LHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWN 486 (881)
T ss_pred HHHH----HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 2111 1111111111111 2344555555444432222222222222322 34688999999999
Q ss_pred HHhhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038852 490 KMGEKDPKPDFL-IYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGIT--PALQDFVRETFGKAGRGEEIERVLNA 560 (851)
Q Consensus 490 ~m~~~~~~pd~~-~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~L~~~~~~~G~~~eA~~ll~~ 560 (851)
.....+.. +.. .|...+..-...|+...++.+++.+...-..++ ..++.++.......|.++.+.....+
T Consensus 487 ~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~ 559 (881)
T KOG0128|consen 487 FIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEK 559 (881)
T ss_pred ccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHh
Confidence 98877544 333 566666666677999999998888876544443 33444455566666777766555444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00062 Score=54.73 Aligned_cols=52 Identities=21% Similarity=0.477 Sum_probs=28.5
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 187 DEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
..|++++|+++|++++..+|. +..++..++.+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555555555555555544 5555555555555555555555555555554
|
... |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.33 Score=53.27 Aligned_cols=409 Identities=11% Similarity=0.103 Sum_probs=209.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038852 124 SYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIE 203 (851)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~ 203 (851)
..+++.+... ..-|+..|...+..+-+.+.+.+...+|..|+..++..+|...+.+.-. |...-+++.|..+|.+.++
T Consensus 91 v~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~we-fe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 91 VFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWE-FEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhH-HhhccchHHHHHHHHHHhh
Confidence 3445555433 3559999999998888888899999999999998887777655543322 3333449999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH---------HHHHHHH------HHHHhcCC------H
Q 038852 204 TAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADS---------LVYNNLI------SGFLNLGN------L 262 (851)
Q Consensus 204 ~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~---------~~~~~Li------~~~~~~g~------~ 262 (851)
.++..|. .|....+.-. ..+.++..+-...|...+. ..|.... ....+.-. +
T Consensus 169 ~npdsp~--Lw~eyfrmEL-----~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~ 241 (568)
T KOG2396|consen 169 FNPDSPK--LWKEYFRMEL-----MYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKF 241 (568)
T ss_pred cCCCChH--HHHHHHHHHH-----HHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHH
Confidence 8877443 4433322111 0011111111110100000 0111100 00000000 0
Q ss_pred HHH----HHHHHHHHhcCCccchhhHHHHH----HHHHH---------------cCCHHHHHHHHHHHHHhcCCCCHHHH
Q 038852 263 EKA----NELFDELKQRCLVYDGVVNATFM----EWWFN---------------QGKDKEAMQSYKSLMERNFRMTPATC 319 (851)
Q Consensus 263 ~~A----~~~~~~~~~~~~~~d~~~~~~li----~~~~~---------------~g~~~~A~~l~~~~~~~~~~~~~~~~ 319 (851)
+.+ ..+++.+...++. +..++..+. +++.. .-+.+....+|++.++.- ++...|
T Consensus 242 d~~kel~k~i~d~~~~~~~~-np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l--~t~sm~ 318 (568)
T KOG2396|consen 242 DFLKELQKNIIDDLQSKAPD-NPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTL--PTESMW 318 (568)
T ss_pred HHHHHHHHHHHHHHhccCCC-CCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHh--hHHHHH
Confidence 111 1122222222221 333333322 22211 112333445565555431 233456
Q ss_pred HHHHHHHHhCC------CHHHHHHHHHHHHHcCC-CCCCCccCHHHHHHHHHHHHHcCChHH-HHHHHHHhccCCCCCCC
Q 038852 320 NTLLEVLLKHE------KKEEAQALFEQMLDNHQ-PPNIQAVNSDTFNIMVNECFKHGKFSE-AIETFKKAGTHPKSKPF 391 (851)
Q Consensus 320 ~~Li~~~~~~g------~~~~A~~l~~~m~~~~~-~p~~~~~~~~~~~~L~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~ 391 (851)
+..|..|...- .....+.+|+.+.+.+. .+. ...-|..+..+++....-.+ |..+..+..
T Consensus 319 e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~----~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f-------- 386 (568)
T KOG2396|consen 319 ECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSEC----LYKQYSVLLLCLNTLNEAREVAVKLTTELF-------- 386 (568)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccc----hHHHHHHHHHHHhccchHhHHHHHhhHHHh--------
Confidence 66666554332 34445556666554332 221 44556666666665554333 333332332
Q ss_pred ccCHHHHHHHHHHHHhc-CCHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHH--HHHHHHHHHcCCccchh
Q 038852 392 AMDVAGYNNIIARYCEN-EMLEE-AEKLLREISTKSLSPDVTTFRTLIDAYLKVER-IDDA--LELFNRMVESGLRVVVS 466 (851)
Q Consensus 392 ~~d~~~~~~li~~~~~~-g~~~~-A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~-~~~A--~~~~~~m~~~~~~~~~~ 466 (851)
.-|...|..-+....+. .++.- -+++|..+...-..+-...|+... .++ .... ..++..+...+-.....
T Consensus 387 ~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~~~~~~t 461 (568)
T KOG2396|consen 387 RDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVIGADSVT 461 (568)
T ss_pred cchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhcCCceee
Confidence 12666666555555432 12221 122223333221222233444433 122 1111 12223333333233445
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHH
Q 038852 467 FGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLC--NEGLFDMSKDIVDQMMK-YGVGITPALQDFVRE 543 (851)
Q Consensus 467 ~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~--~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~L~~ 543 (851)
+-+.+++.+...|-+++|..++.++... ..++...|..++..-. ..-+...+.++|+.|+. .| -+++++.-...
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~ 538 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMK 538 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHH
Confidence 5566788889999999999999999876 3457777777765432 22348889999999974 55 67777776666
Q ss_pred HHHhcCCHHHHHHHHHhhhhc
Q 038852 544 TFGKAGRGEEIERVLNADRWG 564 (851)
Q Consensus 544 ~~~~~G~~~eA~~ll~~~~~~ 564 (851)
.-...|+.+.+-.++-+..+.
T Consensus 539 ~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 539 EELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred hhccCCCcccccHHHHHHHHh
Confidence 666888888887777766543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00059 Score=54.35 Aligned_cols=59 Identities=20% Similarity=0.375 Sum_probs=41.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g 241 (851)
++..+...|++++|+++|+++++..+. +..+|..++.++...|++++|+.+|+++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD--NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 455667777777777777777776655 66677777777777777777777777776653
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.081 Score=61.67 Aligned_cols=147 Identities=13% Similarity=0.036 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----HcCChhHHHHHHHHHHHc---CCCCCCHHHHHHHHHHHHHcC--
Q 038852 120 LDAASYLARQAVFSRIRPTVFTCNAIIAAMY-----RAKRYDDAVALFKYFFDQ---ADIVPNIVSYNNLINTYCDEG-- 189 (851)
Q Consensus 120 ~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~-----~~g~~~~A~~l~~~~~~~---~~~~pd~~~~~~Li~~~~~~g-- 189 (851)
...|.++++.+.+.+ ++.....++.+|. ...|.+.|+.+|+.+.+. .-..-+....+.+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 456667777666554 3333333333333 345777777777777541 000012234555666666532
Q ss_pred ---ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----c
Q 038852 190 ---KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA---GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN----L 259 (851)
Q Consensus 190 ---~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~---g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~----~ 259 (851)
+.+.|+.+|.+.-+.+ +...-..|+.++... .++..|.++|..+.+.|.. ..+..+..+|.. .
T Consensus 305 ~~~d~~~A~~~~~~aA~~g----~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG----NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred ccccHHHHHHHHHHHHhcC----CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 5566777777766554 222333344444432 2566777777777776633 233333333322 2
Q ss_pred CCHHHHHHHHHHHHhcC
Q 038852 260 GNLEKANELFDELKQRC 276 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~ 276 (851)
.+.++|..+|+++.+++
T Consensus 378 r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCHHHHHHHHHHHHHcc
Confidence 35677777777777665
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0031 Score=65.54 Aligned_cols=94 Identities=13% Similarity=0.165 Sum_probs=55.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH
Q 038852 291 WFNQGKDKEAMQSYKSLMERNFRMT--PATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK 368 (851)
Q Consensus 291 ~~~~g~~~~A~~l~~~~~~~~~~~~--~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~ 368 (851)
+.+.|++++|+..|+.+++..+... ..++..++.+|...|++++|+..|+.+++....-. ....++..++.+|..
T Consensus 153 ~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~---~~~dAl~klg~~~~~ 229 (263)
T PRK10803 153 VQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP---KAADAMFKVGVIMQD 229 (263)
T ss_pred HHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc---chhHHHHHHHHHHHH
Confidence 3445666666666666665544321 24555667777777777777777777765422111 134556666666767
Q ss_pred cCChHHHHHHHHHhccCCC
Q 038852 369 HGKFSEAIETFKKAGTHPK 387 (851)
Q Consensus 369 ~g~~~~A~~~~~~~~~~~~ 387 (851)
.|+.++|.++|+++.+..+
T Consensus 230 ~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 230 KGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred cCCHHHHHHHHHHHHHHCc
Confidence 7777777777776655544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0033 Score=66.88 Aligned_cols=93 Identities=12% Similarity=0.170 Sum_probs=44.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCC----C---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH
Q 038852 146 IAAMYRAKRYDDAVALFKYFFDQADIV----P---------NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSN 212 (851)
Q Consensus 146 i~~~~~~g~~~~A~~l~~~~~~~~~~~----p---------d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~ 212 (851)
...|++.|+|..|...|++++...... + -..+++.|+.+|.+.+++.+|+...+++++.++. |+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~--N~K 292 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN--NVK 292 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC--chh
Confidence 445667777777777777664321100 0 0123344444444444444444444444444322 444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
....-+.+|...|+++.|+..|.++++.
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.097 Score=60.07 Aligned_cols=159 Identities=12% Similarity=0.205 Sum_probs=99.3
Q ss_pred CccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 038852 104 RLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRP---TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNN 180 (851)
Q Consensus 104 ~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~ 180 (851)
..+.-..++=+++.+.+++|.++.+... +..+ -...+..+|..+.-.|++++|-.+.-.|.. .+...|..
T Consensus 356 ~~~~~Dhi~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-----n~~~eWe~ 428 (846)
T KOG2066|consen 356 ERDQEDHIDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG-----NNAAEWEL 428 (846)
T ss_pred ecCcchhHHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc-----chHHHHHH
Confidence 3456677888999999999999887754 2222 345778888889999999999999888854 36667777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------HhcCCC
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDM-----------------LSRQLG 243 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m-----------------~~~g~~ 243 (851)
.+..+...+.......+ +.. ++...+...|..++..+.. .+...-.++..+- .+..-.
T Consensus 429 ~V~~f~e~~~l~~Ia~~---lPt-~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se 503 (846)
T KOG2066|consen 429 WVFKFAELDQLTDIAPY---LPT-GPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE 503 (846)
T ss_pred HHHHhccccccchhhcc---CCC-CCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc
Confidence 77777776665443322 221 1122344566666666655 2222222211110 001111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 244 ADSLVYNNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 244 pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
+......|+..|...+++.+|..++-.+...
T Consensus 504 -~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~ 534 (846)
T KOG2066|consen 504 -STALLEVLAHLYLYDNKYEKALPIYLKLQDK 534 (846)
T ss_pred -chhHHHHHHHHHHHccChHHHHHHHHhccCh
Confidence 2234455888899999999998888766543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00035 Score=47.58 Aligned_cols=33 Identities=33% Similarity=0.679 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038852 397 GYNNIIARYCENEMLEEAEKLLREISTKSLSPD 429 (851)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 429 (851)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 477777777777777777777777777777665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.15 Score=50.23 Aligned_cols=17 Identities=18% Similarity=0.583 Sum_probs=7.8
Q ss_pred cCCHHHHHHHHHHHHHc
Q 038852 443 VERIDDALELFNRMVES 459 (851)
Q Consensus 443 ~g~~~~A~~~~~~m~~~ 459 (851)
.+++.+|+++|+++...
T Consensus 167 leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.56 Score=55.12 Aligned_cols=234 Identities=15% Similarity=0.071 Sum_probs=125.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCccc----hh---hHHHH-HHHHHHcCCHHHHHHHHHHHHHhc----CCCCHHHHHHH
Q 038852 255 GFLNLGNLEKANELFDELKQRCLVYD----GV---VNATF-MEWWFNQGKDKEAMQSYKSLMERN----FRMTPATCNTL 322 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~~~~~d----~~---~~~~l-i~~~~~~g~~~~A~~l~~~~~~~~----~~~~~~~~~~L 322 (851)
......++++|..++.++...-..++ .. .+..+ ..+....|+.++|+++.+..+..- .......+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 34456789999998887765422211 11 22222 233455789999999998887642 23345667778
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCC--hHHHHHHHHHhccCCCCC--CCccCHHHH
Q 038852 323 LEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGK--FSEAIETFKKAGTHPKSK--PFAMDVAGY 398 (851)
Q Consensus 323 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~--~~~A~~~~~~~~~~~~~~--~~~~d~~~~ 398 (851)
+.+..-.|++++|..+.....+....-+.......+...-...+...|. +.+.+..|.......... ....-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 8888899999999999888766422221111111122222345666773 333333444332211000 000122334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc--chhHHH-
Q 038852 399 NNIIARYCENEMLEEAEKLLREISTKS----LSPDVT--TFRTLIDAYLKVERIDDALELFNRMVESGLRV--VVSFGT- 469 (851)
Q Consensus 399 ~~li~~~~~~g~~~~A~~l~~~m~~~g----~~pd~~--~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~- 469 (851)
..++.++.+ ++.+..-...-.+.| ..+-.. .+..|+.++...|++++|...++++....... .+.+..
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 444455444 333333222222211 111111 22467888889999999999999988753333 222211
Q ss_pred -HHH--HHHHHcCCHHHHHHHHHHH
Q 038852 470 -KVF--NELITKGKVAECAPILTKM 491 (851)
Q Consensus 470 -~L~--~~~~~~g~~~~A~~ll~~m 491 (851)
..+ ......|+.+++...+.+-
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHhc
Confidence 111 1223468888888777664
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.084 Score=61.55 Aligned_cols=147 Identities=11% Similarity=0.046 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-----HcCChHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHcC-
Q 038852 155 YDDAVALFKYFFDQADIVPNIVSYNNLINTYC-----DEGKVDEGMNVFRRIIET---APVGPSSNTYRHLTKGFVDAG- 225 (851)
Q Consensus 155 ~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~-----~~g~~~~A~~l~~~~~~~---~~~~p~~~~~~~Li~~~~~~g- 225 (851)
..+|.++|+.+.+.. ++..-..++.+|. ...|.+.|+.+|+.+.+. .-..-+......|..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 456788887774432 3444444444333 446788888888888661 000002335666777777643
Q ss_pred ----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH----c
Q 038852 226 ----RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL---GNLEKANELFDELKQRCLVYDGVVNATFMEWWFN----Q 294 (851)
Q Consensus 226 ----~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~---g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~----~ 294 (851)
+.+.|+.+|.+..+.|.. +...+ |+.+|... .|...|.++|..+.+.|.. ..+..+..+|.. .
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 567788888888777644 44333 33333322 3567788888877776643 222222222221 2
Q ss_pred CCHHHHHHHHHHHHHhc
Q 038852 295 GKDKEAMQSYKSLMERN 311 (851)
Q Consensus 295 g~~~~A~~l~~~~~~~~ 311 (851)
.+.+.|..+|+++.+++
T Consensus 378 r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCHHHHHHHHHHHHHcc
Confidence 36677777777777766
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.57 Score=53.68 Aligned_cols=8 Identities=0% Similarity=0.277 Sum_probs=3.7
Q ss_pred HHHHHHHh
Q 038852 505 VVVRGLCN 512 (851)
Q Consensus 505 ~ll~a~~~ 512 (851)
.+|+.|..
T Consensus 458 ~liD~~vd 465 (1102)
T KOG1924|consen 458 ELIDKMVD 465 (1102)
T ss_pred HHHHHHHH
Confidence 34555543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0043 Score=68.27 Aligned_cols=121 Identities=12% Similarity=0.148 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 038852 427 SPDVTTFRTLIDAYLKVERIDDALELFNRMVES--GLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYD 504 (851)
Q Consensus 427 ~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~ 504 (851)
..+...+..+++.+....+++.+..++.+.... .......+...+++.|.+.|..++++++++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 335555566666666666666666666666543 222222333456677777777777777777766677777777777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 038852 505 VVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGK 547 (851)
Q Consensus 505 ~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~ 547 (851)
.|++.+.+.|++..|.++...|+..+.-.++.++...+.++.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 7777777777777777777766655544444444443333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.032 Score=61.10 Aligned_cols=151 Identities=13% Similarity=0.087 Sum_probs=96.8
Q ss_pred ChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 190 KVDEGMNVFRRIIETAPVGP-SSNTYRHLTKGFVDA---------GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 190 ~~~~A~~l~~~~~~~~~~~p-~~~~~~~Li~~~~~~---------g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
..+.|+.+|++++......| ....|..+..++... .+..+|.++-+++++.+.. |..+...++.+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 35667777888773222222 345555555554432 3456777777778877666 777777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHhCCCHHHHHHH
Q 038852 260 GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATC-NTLLEVLLKHEKKEEAQAL 338 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~-~~Li~~~~~~g~~~~A~~l 338 (851)
++++.|..+|+++...+.. ...+|........-.|+.++|.+.+++.++.++.--.... ...+..|+. ...++|+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~ 429 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKL 429 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHH
Confidence 7788888888888777665 5566666666677788888888888887776543222222 222334544 456777777
Q ss_pred HHHHH
Q 038852 339 FEQML 343 (851)
Q Consensus 339 ~~~m~ 343 (851)
|-+-.
T Consensus 430 ~~~~~ 434 (458)
T PRK11906 430 YYKET 434 (458)
T ss_pred Hhhcc
Confidence 76543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.17 Score=65.07 Aligned_cols=328 Identities=15% Similarity=0.111 Sum_probs=175.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038852 144 AIIAAMYRAKRYDDAVALFKYFFDQADIVP--NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGF 221 (851)
Q Consensus 144 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~p--d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~ 221 (851)
.|..+-.+++.|.+|+-.++.- ......- ....|..+...|...++.|...-+...-.. .+ .....|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~---sl~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DP---SLYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----Cc---cHHHHHHHH
Confidence 4555667889999999988873 1111111 223445555589999999887777664211 11 334455567
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHH
Q 038852 222 VDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAM 301 (851)
Q Consensus 222 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~ 301 (851)
...|+++.|...|+.+...+.. ....++.++......|.++.++-..+-............++.-+.+-.+.++++...
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 7789999999999999987543 466777778777778888887776665544322222233333445557778888777
Q ss_pred HHHHHHHHhcCCCCHHHHHH--HHHHHHhCCCHH--HHHHHHHHHHHcCCCCC----CCccCHHHHHHHHHHHHHcCChH
Q 038852 302 QSYKSLMERNFRMTPATCNT--LLEVLLKHEKKE--EAQALFEQMLDNHQPPN----IQAVNSDTFNIMVNECFKHGKFS 373 (851)
Q Consensus 302 ~l~~~~~~~~~~~~~~~~~~--Li~~~~~~g~~~--~A~~l~~~m~~~~~~p~----~~~~~~~~~~~L~~~~~~~g~~~ 373 (851)
+... +.+. .+|.. ++..+.+..+-+ .-.++.+.+.+.-+.+- ....-...|..++....-. +.+
T Consensus 1539 ~~l~---~~n~----e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~ 1610 (2382)
T KOG0890|consen 1539 SYLS---DRNI----EYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELE 1610 (2382)
T ss_pred hhhh---cccc----cchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHH
Confidence 7665 2222 23332 233333322211 11122222222111110 0000112333333332222 122
Q ss_pred HHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhC----CCCC-CHHHHHHHHHHHHHcCCHH
Q 038852 374 EAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREI-STK----SLSP-DVTTFRTLIDAYLKVERID 447 (851)
Q Consensus 374 ~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m-~~~----g~~p-d~~~~~~Ll~~~~~~g~~~ 447 (851)
.-.+.+.... .......+...|..-+..-....+..+-+-.+++. ... +... -..+|...++...+.|.++
T Consensus 1611 ~~~~~l~~~s---~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1611 NSIEELKKVS---YDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred HHHHHhhccC---ccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 2222222221 22111123333433333222222222222222221 111 1221 2467888888889999999
Q ss_pred HHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 038852 448 DALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEK 494 (851)
Q Consensus 448 ~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~ 494 (851)
.|...+-++.+.+ . ...+...+..+...|+...|+.++++.++.
T Consensus 1688 ~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1688 RAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9999888888776 2 233334667888999999999999998765
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00054 Score=46.61 Aligned_cols=33 Identities=42% Similarity=0.812 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGAD 245 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd 245 (851)
+|+.++.+|++.|++++|+++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666655
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.21 Score=54.58 Aligned_cols=96 Identities=16% Similarity=0.187 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
|.....+++..+..+-++.-...+..+|++.+ . +-..|..++.+|... ..+.-..+++++++..+. |++.-..|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-E--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc-c--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 34455667777777777777777777777654 2 555777788888777 456667777777777665 555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 038852 254 SGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
..|.+ ++..++..+|.+++.+
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH
Confidence 55554 7777777777776654
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.52 Score=54.00 Aligned_cols=15 Identities=13% Similarity=0.457 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHcCC
Q 038852 156 DDAVALFKYFFDQAD 170 (851)
Q Consensus 156 ~~A~~l~~~~~~~~~ 170 (851)
.+...+|+.|....+
T Consensus 86 ~e~~~~F~~~~~dmn 100 (1102)
T KOG1924|consen 86 NEVLELFELMGEDMN 100 (1102)
T ss_pred HHHHHHHHHHhhhcc
Confidence 455666777665443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.028 Score=61.45 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 136 RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNI-VSYNNLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~-~~~~~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
..+...|+.+..+|.+.|++++|+..|+++++......+. .+|+.++.+|...|++++|++.|+++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5567889999999999999999999999988754322222 46899999999999999999999999875
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0055 Score=62.21 Aligned_cols=101 Identities=19% Similarity=0.187 Sum_probs=63.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIR--PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLIN 183 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~ 183 (851)
+++.+..+++.|++..|...|...++..+. .....+.+|+.+++..|++++|..+|..+.+..+-.+. ...+.-|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 566666677777777777777766655432 12334555677777777777777777766665444333 255666666
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC
Q 038852 184 TYCDEGKVDEGMNVFRRIIETAPV 207 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~~~~~~ 207 (851)
+..+.|+.++|..+|+++++..|.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCC
Confidence 666777777777777777666544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.013 Score=56.82 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~ 242 (851)
..+||.|+-.+...|+++.|.+.|+...+.++. ...+....+-++.-.|++..|.+-|...-..+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~--y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~ 164 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT--YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP 164 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCc--chHHHhccceeeeecCchHhhHHHHHHHHhcCC
Confidence 345777777777777888888888777776654 434444444445556777777776666655543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.019 Score=54.08 Aligned_cols=95 Identities=17% Similarity=0.039 Sum_probs=78.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH
Q 038852 214 YRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN 293 (851)
Q Consensus 214 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~ 293 (851)
....+.-+...|++++|..+|+-+...++. |..-|..|+.+|-..+++++|+..|......+.. |.........+|..
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~ 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHH
Confidence 344556667889999999999988887766 7777888999999999999999999988776654 77777788888999
Q ss_pred cCCHHHHHHHHHHHHHh
Q 038852 294 QGKDKEAMQSYKSLMER 310 (851)
Q Consensus 294 ~g~~~~A~~l~~~~~~~ 310 (851)
.|+.+.|+..|+.+++.
T Consensus 118 l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 118 MRKAAKARQCFELVNER 134 (165)
T ss_pred hCCHHHHHHHHHHHHhC
Confidence 99999999988887773
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.05 Score=52.85 Aligned_cols=183 Identities=14% Similarity=0.061 Sum_probs=101.4
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038852 189 GKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANEL 268 (851)
Q Consensus 189 g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~ 268 (851)
|-++-|.--|...+...|. -..+||.|+-.+...|+++.|.+.|+...+.+.. ...+..+-+-++.-.|++.-|.+-
T Consensus 79 GL~~LAR~DftQaLai~P~--m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 79 GLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC--cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHH
Confidence 4445555566666666655 3458899999999999999999999999998766 444444455556667899999887
Q ss_pred HHHHHhcCCc-cchhhHHHHHHHHHHcCCHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038852 269 FDELKQRCLV-YDGVVNATFMEWWFNQGKDKEAMQSY-KSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNH 346 (851)
Q Consensus 269 ~~~~~~~~~~-~d~~~~~~li~~~~~~g~~~~A~~l~-~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~ 346 (851)
|...-..+.. |-...|..+. ...-+..+|..-+ ++.... |..-|...|..|.- |++. ...+|+++....
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a 226 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERLKADA 226 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhc
Confidence 7776665443 1122222222 2233444554333 333322 22344433333321 2211 122333333211
Q ss_pred CCC-CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 038852 347 QPP-NIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAG 383 (851)
Q Consensus 347 ~~p-~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~ 383 (851)
..- .....-.++|..|++.|...|+.++|..+|+-+.
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 100 0000023567777777777777777777777664
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.051 Score=58.68 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 429 DVTTFRTLIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 429 d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
|-..+.+++.++.-.|++++|...+++|.+..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 44455667777777788888888888777654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.016 Score=63.32 Aligned_cols=149 Identities=17% Similarity=0.090 Sum_probs=104.7
Q ss_pred HHHHHHHHHHH---hcCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcC
Q 038852 228 GEAVDLLRDML---SRQLGADSLVYNNLISGFLN---------LGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQG 295 (851)
Q Consensus 228 ~~A~~l~~~m~---~~g~~pd~~~~~~Li~~~~~---------~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g 295 (851)
+.|+.+|.+++ +.+.. ....|..+..++.. ..+..+|.++.+++++.+.. |......++.++.-.+
T Consensus 275 ~~Al~lf~ra~~~~~ldp~-~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTL-KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHhhcccCCcc-cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 56778888888 44322 34555555544432 23466788888888888776 8888888888888888
Q ss_pred CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHH
Q 038852 296 KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEA 375 (851)
Q Consensus 296 ~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A 375 (851)
+++.|..+|+.+...++. ...+|......+...|+.++|.+.++++++.... .. ...+....+..|+..+ +++|
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~--~~--~~~~~~~~~~~~~~~~-~~~~ 426 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPR--RR--KAVVIKECVDMYVPNP-LKNN 426 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch--hh--HHHHHHHHHHHHcCCc-hhhh
Confidence 899999999999988753 3456666777778889999999999998874332 21 3445555555776655 6777
Q ss_pred HHHHHHhcc
Q 038852 376 IETFKKAGT 384 (851)
Q Consensus 376 ~~~~~~~~~ 384 (851)
+++|-+-.+
T Consensus 427 ~~~~~~~~~ 435 (458)
T PRK11906 427 IKLYYKETE 435 (458)
T ss_pred HHHHhhccc
Confidence 777666543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.061 Score=58.90 Aligned_cols=146 Identities=14% Similarity=0.170 Sum_probs=88.0
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCC--C-----------
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTV-FTCNAIIAAMYRAKRYDDAVALFKYFFDQAD--I----------- 171 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~--~----------- 171 (851)
.-..++...-+..+...-+++.++++.. .+|- ..|..|. --......+|+++|++.++... +
T Consensus 170 ~Aq~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 170 PAQEIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLA--EEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGH 245 (539)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence 3446777788888888888888888844 3433 2332222 2235667888888888765210 0
Q ss_pred ------CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 038852 172 ------VPN----IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 172 ------~pd----~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g 241 (851)
..| ..+-..|..++.+.|+.++|++.|+++++..+..-+..+...|+.++...+.+.++..++.+..+..
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 011 1222345566667778888888888777665443344566777777777888887777777764432
Q ss_pred CC-CCHHHHHHHHHH
Q 038852 242 LG-ADSLVYNNLISG 255 (851)
Q Consensus 242 ~~-pd~~~~~~Li~~ 255 (851)
.. --..+|+..+-.
T Consensus 326 lpkSAti~YTaALLk 340 (539)
T PF04184_consen 326 LPKSATICYTAALLK 340 (539)
T ss_pred CCchHHHHHHHHHHH
Confidence 21 122445554433
|
The molecular function of this protein is uncertain. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00058 Score=46.26 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038852 397 GYNNIIARYCENEMLEEAEKLLREISTKSLSP 428 (851)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 428 (851)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 46666666666666666666666666655544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.022 Score=62.26 Aligned_cols=68 Identities=13% Similarity=-0.013 Sum_probs=56.6
Q ss_pred cCCCccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038852 101 VGPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTV--FTCNAIIAAMYRAKRYDDAVALFKYFFDQ 168 (851)
Q Consensus 101 ~~~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 168 (851)
......+.++..+|...|++++|+..|++++........ .+|+.+..+|...|++++|++.|+++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344467889999999999999999999999976533221 46899999999999999999999999774
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.55 Score=50.97 Aligned_cols=125 Identities=12% Similarity=0.086 Sum_probs=85.9
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 038852 149 MYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIG 228 (851)
Q Consensus 149 ~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~ 228 (851)
....|++..|-+-+..+++...-.|+.+...+. ++...|+++.+...+..+.+.-+. ...+..++++...+.|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~~~s--~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKIIGT--TDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhhhcC--CchHHHHHHHhhhchhhHH
Confidence 345677777666555555655555665544443 357788888888887766544322 5557788888888888888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 038852 229 EAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLV 278 (851)
Q Consensus 229 ~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~ 278 (851)
+|..+-+.|+...++ |..+...........|-++++...++++...+..
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 888888888877776 6666555555556677888888888887765443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0075 Score=64.24 Aligned_cols=142 Identities=14% Similarity=0.078 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038852 179 NNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN 258 (851)
Q Consensus 179 ~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~ 258 (851)
..-.+.|.+.|+|..|...|++++..-.. .+.-+.++...... .-..++.+|+-+|.+
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~--------------~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lK 269 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEY--------------RRSFDEEEQKKAEA--------LKLACHLNLAACYLK 269 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhc--------------cccCCHHHHHHHHH--------HHHHHhhHHHHHHHh
Confidence 34455677888888888888876543110 00000011100000 011234445555555
Q ss_pred cCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHH-HHH
Q 038852 259 LGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEE-AQA 337 (851)
Q Consensus 259 ~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~-A~~ 337 (851)
.+++.+|++..++++..+.. |......-..+|...|+++.|+..|+++++..+. |..+-+.|+.+-.+..++.+ ..+
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554433 4444444455555555555555555555554432 22333334444333333332 355
Q ss_pred HHHHHHH
Q 038852 338 LFEQMLD 344 (851)
Q Consensus 338 l~~~m~~ 344 (851)
+|..|..
T Consensus 348 ~y~~mF~ 354 (397)
T KOG0543|consen 348 MYANMFA 354 (397)
T ss_pred HHHHHhh
Confidence 5555554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0016 Score=52.31 Aligned_cols=55 Identities=25% Similarity=0.387 Sum_probs=39.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038852 222 VDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCL 277 (851)
Q Consensus 222 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~ 277 (851)
...|++++|+++|++++..... +..++..++.+|.+.|++++|.++++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4567777788888777777655 677777777777777777777777777776543
|
... |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00074 Score=45.73 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG 243 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~ 243 (851)
+|+.++.+|.+.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 4555555555555555555555555555443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.18 Score=57.94 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=41.3
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 038852 184 TYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLE 263 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~ 263 (851)
-+.+.+.+++|+++.+.....-+..--...+..+|..+...|++++|-.+.-+|... +...|...+..+...+...
T Consensus 365 Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccc
Confidence 345566666666665544322111012345566666666677777776666666654 4555555555555555443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.019 Score=54.15 Aligned_cols=70 Identities=17% Similarity=0.360 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCCHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS-----RQLGADSLV 248 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~~ 248 (851)
++..++..+...|++++|+.++++++..+|. |...|..+|.+|...|+..+|+++|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~--~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY--DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3455666667777777777777777777766 777777777777777777777777776643 455555543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.53 Score=51.31 Aligned_cols=296 Identities=12% Similarity=0.060 Sum_probs=162.0
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH--HHHHHHHH---c-----CC--CC
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAV--ALFKYFFD---Q-----AD--IV 172 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~--~l~~~~~~---~-----~~--~~ 172 (851)
..+......-...+.++...+++..+...+.....+.+|.-+..|++.|....-. +-++.+.. . .| ..
T Consensus 18 ~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~ 97 (696)
T KOG2471|consen 18 YSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLK 97 (696)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhh
Confidence 3444555566677899999999998887776666667888888888887654321 12221110 0 01 11
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcCCHHHHHHHH---HHHHhcC---CC
Q 038852 173 PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETA-PVGPS--SNTYRHLTKGFVDAGRIGEAVDLL---RDMLSRQ---LG 243 (851)
Q Consensus 173 pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~-~~~p~--~~~~~~Li~~~~~~g~~~~A~~l~---~~m~~~g---~~ 243 (851)
-+.+.+...+.+|.....+.+|+++......+- +..-. ..........++.....++|+.++ .+|+..+ ..
T Consensus 98 ~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~ 177 (696)
T KOG2471|consen 98 QGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLV 177 (696)
T ss_pred cchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 123344445555666666667776665554321 00000 001112233444555566666544 3443321 00
Q ss_pred CCHHH--------------------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchh-hHHHHHHHHHHcCC
Q 038852 244 ADSLV--------------------------YNNLISGFLNLGNLEKANELFDELKQRCLVYDGV-VNATFMEWWFNQGK 296 (851)
Q Consensus 244 pd~~~--------------------------~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~-~~~~li~~~~~~g~ 296 (851)
-+..+ ...-+++|....++..+.+-.+.+... .-|.. ....-...++-.|+
T Consensus 178 gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~--a~~s~~~l~LKsq~eY~~gn 255 (696)
T KOG2471|consen 178 GNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNI--AQDSSMALLLKSQLEYAHGN 255 (696)
T ss_pred ccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhh--cCCCcHHHHHHHHHHHHhcc
Confidence 00011 111223333333333333333322211 11221 22222345677899
Q ss_pred HHHHHHHHHHHHH---hcCCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------cCCCCCCC-----ccCH
Q 038852 297 DKEAMQSYKSLME---RNFRM-----TPATCNTLLEVLLKHEKKEEAQALFEQMLD-------NHQPPNIQ-----AVNS 356 (851)
Q Consensus 297 ~~~A~~l~~~~~~---~~~~~-----~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~-------~~~~p~~~-----~~~~ 356 (851)
+.+|.+++...-- .|... .-..||.|+-++.+.|.+..+..+|.+++. .|+++... ....
T Consensus 256 ~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~ 335 (696)
T KOG2471|consen 256 HPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSM 335 (696)
T ss_pred hHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccch
Confidence 9999988865421 22111 123468888888888998888888888874 44443211 1134
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHh
Q 038852 357 DTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCE 407 (851)
Q Consensus 357 ~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~ 407 (851)
.+....+..|...|+.-.|.++|.++...... +...|..|.++|..
T Consensus 336 eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~-----nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 336 EILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR-----NPRLWLRLAECCIM 381 (696)
T ss_pred hhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc-----CcHHHHHHHHHHHH
Confidence 45566788889999999999999988655443 77889988888864
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=1.1 Score=52.91 Aligned_cols=407 Identities=8% Similarity=-0.026 Sum_probs=204.9
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCH-HHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNI-VSYNNLINT 184 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~-~~~~~Li~~ 184 (851)
..+..+...++.|++..+..+...+. ...-.....|..|...+ ....+++...++++. .-.|-. ..-...+..
T Consensus 35 ~~f~~A~~a~~~g~~~~~~~~~~~l~-d~pL~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~----~~~P~~~~Lr~~~l~~ 108 (644)
T PRK11619 35 QRYQQIKQAWDNRQMDVVEQLMPTLK-DYPLYPYLEYRQLTQDL-MNQPAVQVTNFIRAN----PTLPPARSLQSRFVNE 108 (644)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcc-CCCcHhHHHHHHHHhcc-ccCCHHHHHHHHHHC----CCCchHHHHHHHHHHH
Confidence 45677888899999999888777653 11111222333332211 123455555555432 222222 222334445
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEK 264 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~ 264 (851)
+.+.+++.+.+.++.. .+. +......++.++...|+.++|.+..+++-..|.. ....+..++..+.+.|.+..
T Consensus 109 La~~~~w~~~~~~~~~----~p~--~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~ 181 (644)
T PRK11619 109 LARREDWRGLLAFSPE----KPK--PVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDP 181 (644)
T ss_pred HHHccCHHHHHHhcCC----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCH
Confidence 5667787776663321 122 5556677788888899988888877777666544 45566777777776665433
Q ss_pred HH--HHHHHHHhcCCccchhhHHHHHHHHH------------HcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--Hh
Q 038852 265 AN--ELFDELKQRCLVYDGVVNATFMEWWF------------NQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVL--LK 328 (851)
Q Consensus 265 A~--~~~~~~~~~~~~~d~~~~~~li~~~~------------~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~--~~ 328 (851)
.. +-++.+...+ +......++..+. -..+...+..++.. +.++...-..++.++ ..
T Consensus 182 ~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rla 253 (644)
T PRK11619 182 LAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVA 253 (644)
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHH
Confidence 22 1122222222 1111122221110 00111111111111 111211111111122 23
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhc
Q 038852 329 HEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCEN 408 (851)
Q Consensus 329 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~ 408 (851)
..+.+.|..++..+.....-... ....++..++......+..++|...++....... |...+...+..-.+.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~--~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~------~~~~~e~r~r~Al~~ 325 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNED--QRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ------STSLLERRVRMALGT 325 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC------CcHHHHHHHHHHHHc
Confidence 45668888888877543321100 0123344444444444336788888887643322 333344455555688
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHH-----
Q 038852 409 EMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAE----- 483 (851)
Q Consensus 409 g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~----- 483 (851)
++++.+...+..|... ..-...-..-++.++...|+.++|..+|+++... ..+|..|.. .+.|..-.
T Consensus 326 ~dw~~~~~~i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-----~~fYG~LAa--~~Lg~~~~~~~~~ 397 (644)
T PRK11619 326 GDRRGLNTWLARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-----RGFYPMVAA--QRLGEEYPLKIDK 397 (644)
T ss_pred cCHHHHHHHHHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CCcHHHHHH--HHcCCCCCCCCCC
Confidence 9999998888887553 2224455566788888899999999999997542 123332221 11221100
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 484 CAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLN 559 (851)
Q Consensus 484 A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~ 559 (851)
.......+ .-+ --...+..+...|+..+|...+..+.+. .+......++....+.|..+.++....
T Consensus 398 ~~~~~~~~-----~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 398 APKPDSAL-----TQG--PEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred CCchhhhh-----ccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 00000000 000 1112334455667777777777666653 344455556666666666666655443
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.04 E-value=1.3 Score=53.34 Aligned_cols=89 Identities=8% Similarity=0.070 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 038852 434 RTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNE 513 (851)
Q Consensus 434 ~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~ 513 (851)
...+.+|...|.+++...+|-+..+.+ .....|..++....+.. +.+..+..+... ..-....|..++..+...
T Consensus 605 ~~a~lcYi~agsv~k~v~~w~~~~~~~--~~~~~y~~~~e~l~~~~---~~l~~~~~~~~~-s~~l~~~~~~yanllasQ 678 (1049)
T KOG0307|consen 605 SAAILCYICAGSVDKLVEIWLKALDLE--LAPTSYQDLAEDLMELT---LKLAQFSANKTY-SAGLAKKFSEYANLLASQ 678 (1049)
T ss_pred hhhhHHhhhccChhhhHHHHHHhcccc--cchHHHHHHHHHHHHHH---hhhhhcccCccc-cHHHHHHHHHHHHHHHhc
Confidence 445668888999999999998887765 23333333332222111 111111111110 000223344555666678
Q ss_pred CChHHHHHHHHHHHH
Q 038852 514 GLFDMSKDIVDQMMK 528 (851)
Q Consensus 514 g~~~~A~~~~~~m~~ 528 (851)
|.++.|+.++..+..
T Consensus 679 G~~~~A~~~l~~~~s 693 (1049)
T KOG0307|consen 679 GALAAAMSFLPLLPS 693 (1049)
T ss_pred ChHHHHHhhcCcCcc
Confidence 888888888776543
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.39 Score=54.86 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=27.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCccchh---HHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 438 DAYLKVERIDDALELFNRMVESGLRVVVS---FGTKVFNELITKGKVAECAPILTKM 491 (851)
Q Consensus 438 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~L~~~~~~~g~~~~A~~ll~~m 491 (851)
-++...|+-++|..+.++|.... .|... .| .++.+|+..|+.....+++.-.
T Consensus 509 iaL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~-t~alAy~GTgnnkair~lLh~a 563 (929)
T KOG2062|consen 509 IALVVYGRQEDADPLIKELLRDK-DPILRYGGMY-TLALAYVGTGNNKAIRRLLHVA 563 (929)
T ss_pred HHHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHH-HHHHHHhccCchhhHHHhhccc
Confidence 34455566667777777776543 22111 22 2445566666655555555443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0039 Score=50.82 Aligned_cols=56 Identities=21% Similarity=0.376 Sum_probs=30.2
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 038852 184 TYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g 241 (851)
+|.+.+++++|+++++++++.+|. +...|..++.++.+.|++++|.+.|+++++.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD--DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc--cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 445555555555555555555444 44455555555555555555555555555543
|
|
| >KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.01 E-value=1.2 Score=52.46 Aligned_cols=169 Identities=14% Similarity=0.217 Sum_probs=80.3
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 038852 148 AMYRAKRYDDAVALFKYFFDQADIVPNI--VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG 225 (851)
Q Consensus 148 ~~~~~g~~~~A~~l~~~~~~~~~~~pd~--~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g 225 (851)
.|...|+|++|+++-+.- |+. .++..-++.|...++|..|.++|.++.+ .|..++--+....
T Consensus 367 ~yLd~g~y~kAL~~ar~~-------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~---------~FEEVaLKFl~~~ 430 (911)
T KOG2034|consen 367 TYLDKGEFDKALEIARTR-------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS---------SFEEVALKFLEIN 430 (911)
T ss_pred HHHhcchHHHHHHhccCC-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh---------hHHHHHHHHHhcC
Confidence 455678888887765422 332 1344445566777788888888777633 3444444444555
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHH-hcCCHH----HHHHHHHHHH--------h-cCCccchhhHHH
Q 038852 226 RIGEAVDLLRDMLSRQLGADSLVYN-----NLISGFL-NLGNLE----KANELFDELK--------Q-RCLVYDGVVNAT 286 (851)
Q Consensus 226 ~~~~A~~l~~~m~~~g~~pd~~~~~-----~Li~~~~-~~g~~~----~A~~~~~~~~--------~-~~~~~d~~~~~~ 286 (851)
+.+.-..++.+=+++ +.++..+-. -|+..|. +.++++ ++++-++.-. + .....+...+.+
T Consensus 431 ~~~~L~~~L~KKL~~-lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nret 509 (911)
T KOG2034|consen 431 QERALRTFLDKKLDR-LTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRET 509 (911)
T ss_pred CHHHHHHHHHHHHhh-CChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHH
Confidence 555333333333322 222222111 1333332 222222 2222221111 0 011112223333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038852 287 FMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQM 342 (851)
Q Consensus 287 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m 342 (851)
....+...|+.++...+-.-+. .|..++..++..+.+++|++++..-
T Consensus 510 v~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 510 VYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444555666666554444332 3445666677777777777776544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.03 Score=49.79 Aligned_cols=93 Identities=19% Similarity=0.210 Sum_probs=63.9
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcC
Q 038852 184 TYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADS---LVYNNLISGFLNLG 260 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~~~~~Li~~~~~~g 260 (851)
++...|+++.|++.|.+.+...|. +..+||.-..++.-.|+.++|++-++++++..-.-.. ..|.--+..|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE--RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc--chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 456677788888888777776655 5557777777777788888888777777764322121 34555566777778
Q ss_pred CHHHHHHHHHHHHhcCCc
Q 038852 261 NLEKANELFDELKQRCLV 278 (851)
Q Consensus 261 ~~~~A~~~~~~~~~~~~~ 278 (851)
+.+.|+.-|+...+.|..
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888777777666543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0031 Score=51.45 Aligned_cols=60 Identities=12% Similarity=0.241 Sum_probs=46.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 038852 146 IAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPV 207 (851)
Q Consensus 146 i~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~ 207 (851)
..+|.+.+++++|++++++++...+ .+...|...+.++...|++++|++.|+++++.++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDP--DDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCc--ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 3467788888888888888877543 35667777888888888888888888888887665
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.014 Score=59.37 Aligned_cols=100 Identities=20% Similarity=0.366 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVP-NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSS-NTYRHLT 218 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~p-d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~-~~~~~Li 218 (851)
.|+.-+. +++.|+|.+|...|...++..+... ....+.-|+.++...|++++|..+|..+.+..|..+.. +++..|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444443 3455666666666666655432110 12234446666666666666666666666655544433 5566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g 241 (851)
.+..+.|+.++|..+|+++++.-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 66666666666666666666553
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.045 Score=51.59 Aligned_cols=106 Identities=20% Similarity=0.324 Sum_probs=67.3
Q ss_pred HHcCChhHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 038852 150 YRAKRYDDAVALFKYFFDQAD--IVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRI 227 (851)
Q Consensus 150 ~~~g~~~~A~~l~~~~~~~~~--~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~ 227 (851)
...++.+.++..+++++.... +-++... ..-+......++.+. ..+...++..+...|++
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~--------~~~~~~l~~~~~~~~~~ 78 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY--------LDALERLAEALLEAGDY 78 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH--------HHHHHHHHHHHHHTT-H
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH--------HHHHHHHHHHHHhccCH
Confidence 456777888888877765321 1111100 111222333333332 12566778888889999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 228 GEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 228 ~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
++|+.++++++...+- |...|..+|.+|...|+...|+++|+++.+
T Consensus 79 ~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 79 EEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999888665 888899999999999999999998887754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0035 Score=51.96 Aligned_cols=62 Identities=21% Similarity=0.386 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHc---CCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQ---ADI-VPN-IVSYNNLINTYCDEGKVDEGMNVFRRII 202 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~---~~~-~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~ 202 (851)
+++.+..+|...|++++|++.|+++++. .+. .++ +.+++.++.+|...|++++|+++|++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555556666666666666666655432 110 011 2344455555555555555555555544
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0029 Score=52.43 Aligned_cols=64 Identities=25% Similarity=0.487 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC---C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETA---P-VGPS-SNTYRHLTKGFVDAGRIGEAVDLLRDMLS 239 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~---~-~~p~-~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 239 (851)
.+|+.++.+|...|++++|++.|+++++.. + ..++ ..+++.++.+|...|++++|+++|+++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356667777777777777777777766431 1 1111 34455566666666666666666665543
|
... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.46 Score=47.04 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=15.2
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCC
Q 038852 326 LLKHEKKEEAQALFEQMLDNHQP 348 (851)
Q Consensus 326 ~~~~g~~~~A~~l~~~m~~~~~~ 348 (851)
-...+++.+|+++|+++......
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556777888888877665443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0013 Score=43.40 Aligned_cols=29 Identities=31% Similarity=0.658 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038852 397 GYNNIIARYCENEMLEEAEKLLREISTKS 425 (851)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 425 (851)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555543
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.67 Score=50.88 Aligned_cols=170 Identities=16% Similarity=0.156 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 038852 245 DSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLE 324 (851)
Q Consensus 245 d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~ 324 (851)
|.....+++..+...-.+.-.+.+..+|+..+- +...+..++.+|... .-+.-..+++++.+.++.. ++.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnD-vv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFND-VVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchh-HHHHHHHHH
Confidence 555566667777666666666677777766543 445566666666666 4455556666666655422 122222333
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHH
Q 038852 325 VLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIAR 404 (851)
Q Consensus 325 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~ 404 (851)
.|.+ ++..++..+|.+++..-+.-.-...-.++|..|... -..+.|..+.+..++....+.. .-.+.+..+-.-
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~---~~~Vl~qdv~~~ 214 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEG---RGSVLMQDVYKK 214 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccc---hHHHHHHHHHHH
Confidence 3333 666666666666665432211000011123322221 1344555555555554332221 133444444455
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 038852 405 YCENEMLEEAEKLLREISTK 424 (851)
Q Consensus 405 ~~~~g~~~~A~~l~~~m~~~ 424 (851)
|....++++|++++..+++.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 215 YSENENWTEAIRILKHILEH 234 (711)
T ss_pred hccccCHHHHHHHHHHHhhh
Confidence 55566666666666666554
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=1 Score=49.03 Aligned_cols=131 Identities=9% Similarity=0.044 Sum_probs=91.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSR-IRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
...-|......||+..|.+-+..+++.. -.|+.....+. .....|+|+.+...+..+-.. +.....+...+++..
T Consensus 292 ~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 292 ITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSL 367 (831)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhh
Confidence 3445677778899998887666666543 23444444333 456789999999998776332 223456778899999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG 243 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~ 243 (851)
.+.|++++|..+.+-|+...-. +.++....+......|-++++...++++...+..
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie--~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIE--DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hchhhHHHHHHHHHHHhccccC--ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 9999999999999988765423 4445555555556678899999999988776433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.017 Score=50.32 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 038852 298 KEAMQSYKSLMERNFRMTPATCNTLLEVLLK 328 (851)
Q Consensus 298 ~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~ 328 (851)
-+.+.+|..|+..+++|+..+|+.++..+.+
T Consensus 86 ~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 86 TNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 3455667777777777777777777766543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.07 Score=54.77 Aligned_cols=57 Identities=26% Similarity=0.330 Sum_probs=37.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 217 LTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 217 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
-.......|++.+|..+|+.+.....+ +......|+.+|...|+.+.|..++..+-.
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 344556677777777777777766544 445556677777777777777777766543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.046 Score=50.29 Aligned_cols=67 Identities=15% Similarity=0.267 Sum_probs=42.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH
Q 038852 145 IIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSS 211 (851)
Q Consensus 145 li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~ 211 (851)
-.....+.|+|++|++.|+.+..+....+- ..+-..|+.+|.+.+++++|+..+++.++.+|..+++
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 333445667777777777777555443322 2345567777777777777777777777777766654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.039 Score=50.77 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=59.9
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIR--PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNI 175 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~ 175 (851)
..+.......++.|++++|++.|+.+...-.. -...+-..|+.+|.+.+++++|+..++++++..+..+++
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 56788899999999999999999998765432 234567789999999999999999999999988777764
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.72 E-value=1 Score=58.31 Aligned_cols=326 Identities=10% Similarity=0.052 Sum_probs=179.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 038852 109 NRVQSLIRAGDLDAASYLARQAVFSRIR--PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYC 186 (851)
Q Consensus 109 ~ll~~l~~~g~~~~A~~l~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~ 186 (851)
.+..+-.+.+.+.+|...++.-.....+ .....+..+...|+..+++|....+...-.. .++ ....|....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~s---l~~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPS---LYQQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----Ccc---HHHHHHHHH
Confidence 4555677888999999988884211111 1233445555589999999988888763211 122 334455577
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHhcCCHHHH
Q 038852 187 DEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNL-ISGFLNLGNLEKA 265 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L-i~~~~~~g~~~~A 265 (851)
..|+++.|...|+.++..++. ....++.++......|.++.++...+-......+ ....|+++ +.+-.+.++++..
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p~--~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se-~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPD--KEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSE-EVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCCc--cccchhhHHHhhhcccchhHHHhhhcchhhccCH-HHHHHHHHHHHHHhhhcchhhh
Confidence 889999999999999988765 5667888888888888888888877665554222 33334333 4455788888888
Q ss_pred HHHHHHHHhcCCccchhhHHH--HHHHHHHcC--CHHHHHHHHHHHHHhcC--------C-CCHHHHHHHHHHHHhCCCH
Q 038852 266 NELFDELKQRCLVYDGVVNAT--FMEWWFNQG--KDKEAMQSYKSLMERNF--------R-MTPATCNTLLEVLLKHEKK 332 (851)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~--li~~~~~~g--~~~~A~~l~~~~~~~~~--------~-~~~~~~~~Li~~~~~~g~~ 332 (851)
...+. ..+. ..|.. ++....+.. |.-.-.++++.+.+.-+ . --...|..++........
T Consensus 1538 e~~l~---~~n~----e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el- 1609 (2382)
T KOG0890|consen 1538 ESYLS---DRNI----EYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL- 1609 (2382)
T ss_pred hhhhh---cccc----cchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-
Confidence 77765 2211 12221 223222222 21111122222222111 0 001233333333322111
Q ss_pred HHHHHHHHHHHHcCCCCCCC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHhc-cCCCC-CCCccCHHHHHHHHHHHHhcC
Q 038852 333 EEAQALFEQMLDNHQPPNIQ-AVNSDTFNIMVNECFKHGKFSEAIETFKKAG-THPKS-KPFAMDVAGYNNIIARYCENE 409 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~~~-~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~d~~~~~~li~~~~~~g 409 (851)
+ ...+... +..++.. ..+...|...+..-....+..+-+--+++.. ..... .--..-..+|..+++....+|
T Consensus 1610 ~---~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG 1684 (2382)
T KOG0890|consen 1610 E---NSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAG 1684 (2382)
T ss_pred H---HHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcc
Confidence 1 1111111 1122111 1122333333332222222333322233221 11001 001114678989999888899
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 410 MLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 410 ~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
.++.|...+-++.+.+ -...+...+......|+...|+.++++.++..
T Consensus 1685 ~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1685 HLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred cHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 9999998877776653 33456667778889999999999999998654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.16 Score=52.24 Aligned_cols=127 Identities=13% Similarity=0.156 Sum_probs=78.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
.-.......|++.+|..+|+.++...+. +......|+++|...|+++.|..++..+-...-.........-|..+.+.
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~--~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPE--NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 3344567889999999999999988766 56678889999999999999999998876542221222222234444444
Q ss_pred CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038852 260 GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMER 310 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 310 (851)
.+..+...+-.++-. +.. |......+...|...|+.++|++.+-.++++
T Consensus 217 a~~~~~~~l~~~~aa-dPd-d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 217 AATPEIQDLQRRLAA-DPD-DVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred hcCCCHHHHHHHHHh-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444333333333222 222 4555555555566666666666555555544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.002 Score=42.48 Aligned_cols=28 Identities=32% Similarity=0.684 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
+|+.|+.+|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.17 Score=45.29 Aligned_cols=144 Identities=17% Similarity=0.194 Sum_probs=83.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 038852 111 VQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK 190 (851)
Q Consensus 111 l~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~ 190 (851)
+..++-.|..++..++..+.+.+. +..-+|++|--....-+-+-..++++.+-+.. |. ..+|+
T Consensus 9 AK~~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF----Di----------s~C~N 71 (161)
T PF09205_consen 9 AKERILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIF----DI----------SKCGN 71 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-----G----------GG-S-
T ss_pred HHHHHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhc----Cc----------hhhcc
Confidence 445667788888888888877654 56667777766666666666666666552221 11 23344
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFD 270 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~ 270 (851)
+...+..+-.+- . +.......+..+...|+-+.-.+++.++.+. -.++......++.+|.+.|+..++.+++.
T Consensus 72 lKrVi~C~~~~n----~--~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 72 LKRVIECYAKRN----K--LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp THHHHHHHHHTT---------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHhc----c--hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 444444443221 1 3334455566677778888878888777653 34477777788888888888888888888
Q ss_pred HHHhcCCc
Q 038852 271 ELKQRCLV 278 (851)
Q Consensus 271 ~~~~~~~~ 278 (851)
++-++|+.
T Consensus 145 ~ACekG~k 152 (161)
T PF09205_consen 145 EACEKGLK 152 (161)
T ss_dssp HHHHTT-H
T ss_pred HHHHhchH
Confidence 88777654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.21 Score=44.72 Aligned_cols=137 Identities=15% Similarity=0.236 Sum_probs=68.6
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLV---YNNLISGFLNLGNL 262 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~---~~~Li~~~~~~g~~ 262 (851)
.-.|.+++..+++.+..... +..-+|-+|--....-+-+-.+++++.+-+. + |... ...++.+|.+.|.
T Consensus 13 ildG~V~qGveii~k~v~Ss----ni~E~NWvICNiiDaa~C~yvv~~LdsIGki-F--Dis~C~NlKrVi~C~~~~n~- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS----NIKEYNWVICNIIDAADCDYVVETLDSIGKI-F--DISKCGNLKRVIECYAKRNK- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG-S---GGG-S-THHHHHHHHHTT--
T ss_pred HHhchHHHHHHHHHHHcCcC----CccccceeeeecchhhchhHHHHHHHHHhhh-c--CchhhcchHHHHHHHHHhcc-
Confidence 34567777777777776654 4445555655555555555555555554332 1 2211 1223333333332
Q ss_pred HHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038852 263 EKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQM 342 (851)
Q Consensus 263 ~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m 342 (851)
+.......++.+...|+-+.-.+++.++.+ +-.+++.....+..+|.+.|+..++-+++.++
T Consensus 85 -----------------~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 85 -----------------LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp -------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 222333344455666666666666666654 22345566666777777777777777777777
Q ss_pred HHcCCC
Q 038852 343 LDNHQP 348 (851)
Q Consensus 343 ~~~~~~ 348 (851)
.++|++
T Consensus 147 CekG~k 152 (161)
T PF09205_consen 147 CEKGLK 152 (161)
T ss_dssp HHTT-H
T ss_pred HHhchH
Confidence 776653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.87 Score=45.91 Aligned_cols=276 Identities=14% Similarity=0.210 Sum_probs=144.3
Q ss_pred CCCCCHHHHHHHHHHH-HHcCChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----C
Q 038852 134 RIRPTVFTCNAIIAAM-YRAKRYDDAVALFKYFFDQADIVPN--IVSYNNLINTYCDEGKVDEGMNVFRRIIETA----P 206 (851)
Q Consensus 134 ~~~~~~~~~~~li~~~-~~~g~~~~A~~l~~~~~~~~~~~pd--~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~----~ 206 (851)
+-.||+..-|..-.+- .+..+.++|+.-|.+.++..|.+-+ ..++.-+|..+.+.|++++..+.|..++.-- -
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3455554433322221 1345777888888887776554322 2345566777888888888877777765310 0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc--
Q 038852 207 VGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR--QLG---ADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVY-- 279 (851)
Q Consensus 207 ~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~--g~~---pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~-- 279 (851)
..-+..+.|.++.......+.+.-.++|+..++. ..+ .--.|-..|+..|...+++.+..++++.+...+-.-
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 0113445566666555555554444444433321 001 011244568888888888888888888776543221
Q ss_pred ---------chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCCHHHHHHHHH-----HHHhCCCHHHHHHHHHHHHH
Q 038852 280 ---------DGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF-RMTPATCNTLLE-----VLLKHEKKEEAQALFEQMLD 344 (851)
Q Consensus 280 ---------d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~~~~~~~~~Li~-----~~~~~g~~~~A~~l~~~m~~ 344 (851)
-..+|..-+.+|....+-++...+|+..+.... -|.+.... +|+ +..+.|++++|..-|-++.+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHh
Confidence 134566667777777777777778877665322 12222222 232 33466778777655544443
Q ss_pred cCCCC-CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCC--ccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038852 345 NHQPP-NIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPF--AMDVAGYNNIIARYCENEMLEEAEKLLRE 420 (851)
Q Consensus 345 ~~~~p-~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 420 (851)
.--.. +.....-.-|..|+.++.+.|- .-|+.- ..+++ .|.+.+...|+.+|- .+++.+-+.++..
T Consensus 260 NYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQ----EAKPyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 260 NYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQ----EAKPYKNDPEILAMTNLVAAYQ-NNDIIEFERILKS 328 (440)
T ss_pred cccccCCcchhHHHHHHHHHHHHHHcCC-----CCCccc----ccCCCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHh
Confidence 21110 0000122235555666655542 111111 11122 234556677777764 3455555555544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.022 Score=49.66 Aligned_cols=86 Identities=17% Similarity=0.277 Sum_probs=47.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHc
Q 038852 400 NIIARYCENEMLEEAEKLLREISTKSL-SPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITK 478 (851)
Q Consensus 400 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~ 478 (851)
..|..+...+++.....+|..+++.|+ .|...+|+.++.+.++..--..+ -.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~---------------------------ie 82 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSED---------------------------IE 82 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchh---------------------------HH
Confidence 344444455666666666666666665 55666666655554432110000 01
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038852 479 GKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCN 512 (851)
Q Consensus 479 g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~ 512 (851)
++.-+.+.+|+.|+..+++|+..+|+.++..+.+
T Consensus 83 ~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 83 NKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 1223445567777777778888888877776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.025 Score=55.42 Aligned_cols=101 Identities=16% Similarity=0.199 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhH
Q 038852 210 SSNTYRHLTKGFVDA-----GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVN 284 (851)
Q Consensus 210 ~~~~~~~Li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~ 284 (851)
|..+|..++..|.+. |..+-....++.|.+.|+.-|..+|+.|++++=+ |.+- -..+|..+--.
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h--------- 114 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH--------- 114 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc---------
Confidence 566666666666643 4555555666666666666666666666666554 2221 11111111100
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q 038852 285 ATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKH 329 (851)
Q Consensus 285 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~ 329 (851)
.-..-+-|+++++.|...|+-||..++..|+.++.+.
T Consensus 115 --------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 115 --------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred --------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 0123445666777777777777777777777666443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.47 Score=48.18 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=50.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH----cCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCH
Q 038852 320 NTLLEVLLKHEKKEEAQALFEQMLD----NHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDV 395 (851)
Q Consensus 320 ~~Li~~~~~~g~~~~A~~l~~~m~~----~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~ 395 (851)
..++.++.+.|.+.+|+.+...++. .+-+++. ..++..--.+|...+++.++..-+..+.......-..|-.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~L----i~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpql 204 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINL----ITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQL 204 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccce----eehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHH
Confidence 4477788888888888887665543 2223321 1223333345555666655555554443322222122222
Q ss_pred HHHHHHHHH--HHhcCCHHHHHHHHHHHHh
Q 038852 396 AGYNNIIAR--YCENEMLEEAEKLLREIST 423 (851)
Q Consensus 396 ~~~~~li~~--~~~~g~~~~A~~l~~~m~~ 423 (851)
..-..|+.+ .|...++..|..+|-+..+
T Consensus 205 qa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 205 QAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 222223322 2445567777777766655
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.084 Score=59.18 Aligned_cols=131 Identities=19% Similarity=0.217 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHH
Q 038852 318 TCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAG 397 (851)
Q Consensus 318 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~ 397 (851)
..+.++..+.+.|..+.|+.+... ..+- .....+.|+++.|.++.++.. +...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D--------------~~~r---FeLAl~lg~L~~A~~~a~~~~----------~~~~ 349 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTD--------------PDHR---FELALQLGNLDIALEIAKELD----------DPEK 349 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS---------------HHHH---HHHHHHCT-HHHHHHHCCCCS----------THHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCC--------------hHHH---hHHHHhcCCHHHHHHHHHhcC----------cHHH
Confidence 355566666666666666655332 2221 222336666666665544331 4555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH
Q 038852 398 YNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELIT 477 (851)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~ 477 (851)
|..|.+...+.|+++-|++.|.+..+ |..|+-.|.-.|+.++-.++.+.+.+.|. ++..+.++..
T Consensus 350 W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~ 414 (443)
T PF04053_consen 350 WKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALL 414 (443)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHH
Confidence 66666666666666666666655431 44455555666666665555555555441 1223344445
Q ss_pred cCCHHHHHHHHHH
Q 038852 478 KGKVAECAPILTK 490 (851)
Q Consensus 478 ~g~~~~A~~ll~~ 490 (851)
.|++++.++++.+
T Consensus 415 lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 415 LGDVEECVDLLIE 427 (443)
T ss_dssp HT-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 5666655555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.034 Score=54.57 Aligned_cols=103 Identities=14% Similarity=0.185 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHH
Q 038852 394 DVAGYNNIIARYCE-----NEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFG 468 (851)
Q Consensus 394 d~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 468 (851)
+-.+|..+++.|.+ .|..+=....++.|.+.|+.-|..+|+.|++++=+ |.+. ...++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv----------------p~n~f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV----------------PRNFF 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc----------------cccHH
Confidence 55666666666654 24455555555666666666666666666665543 2221 11111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 038852 469 TKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGL 515 (851)
Q Consensus 469 ~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~ 515 (851)
..++.- .-.+-+-|++++++|.+.|+.||..++..|+..+.+.+.
T Consensus 109 Q~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111111 122346688899999999999999999998888866543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.56 E-value=1.3 Score=48.46 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=34.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
.+.+.-+.|+++...++...... ..++...|..+.. .+.++++++..+++++...
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~---~~~~~~~~~al~~--l~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNE---DSPEYSFYRALLA--LRQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccC---CChhHHHHHHHHH--HhCccHHHHHHHHHHHHHH
Confidence 45677788999885555444422 2224444444443 3788888888888877653
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.49 E-value=2.1 Score=51.49 Aligned_cols=59 Identities=19% Similarity=0.390 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH---HHHHcCChhHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPT-VFTCNAIIA---AMYRAKRYDDAVALFKYF 165 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~-~~~~~~li~---~~~~~g~~~~A~~l~~~~ 165 (851)
+...+..++....+++|..+.+.....+.... ...+..+.. -+...|++++|+++|+++
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~ 372 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKS 372 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 78889999999999999988776543221111 111222222 245789999999999987
|
|
| >KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.49 E-value=2.3 Score=50.16 Aligned_cols=176 Identities=15% Similarity=0.277 Sum_probs=91.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038852 179 NNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN 258 (851)
Q Consensus 179 ~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~ 258 (851)
+.+-+.|.+.|+|++|+++-+.-.+. -..++..-+..|...++|..|-++|.++.+ .|..+.--+..
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~p~~-----le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~ 428 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTRPDA-----LETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLE 428 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCCHHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHh
Confidence 34556788899999998876543111 112556667788888999999999988743 24444445555
Q ss_pred cCCHHHHHHHHHHHHhcCCccchhhH-----HHHHHHHH-HcCCH----HHHHHHHHHHHH--------h-cCCCCHHHH
Q 038852 259 LGNLEKANELFDELKQRCLVYDGVVN-----ATFMEWWF-NQGKD----KEAMQSYKSLME--------R-NFRMTPATC 319 (851)
Q Consensus 259 ~g~~~~A~~~~~~~~~~~~~~d~~~~-----~~li~~~~-~~g~~----~~A~~l~~~~~~--------~-~~~~~~~~~ 319 (851)
..+.+.-..++.+=+++ +.++..+- .-+++.|. +.++. +++++.++.-.+ . ....+....
T Consensus 429 ~~~~~~L~~~L~KKL~~-lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nr 507 (911)
T KOG2034|consen 429 INQERALRTFLDKKLDR-LTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNR 507 (911)
T ss_pred cCCHHHHHHHHHHHHhh-CChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhH
Confidence 55555333333332222 22222221 12222222 22322 233333222111 0 001111223
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 320 NTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 320 ~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
.+....+...|+.++++.+-.-+. .|..++..++..+.+++|++++.+-
T Consensus 508 etv~~l~~~~~~~e~ll~fA~l~~--------------d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 508 ETVYQLLASHGRQEELLQFANLIK--------------DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334445556677766655443332 3556677777888888888887665
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.46 E-value=1.5 Score=47.96 Aligned_cols=65 Identities=18% Similarity=0.162 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc---chhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 245 DSLVYNNLISGFLNLGNLEKANELFDELKQRCLVY---DGVVNATFMEWWFNQGKDKEAMQSYKSLME 309 (851)
Q Consensus 245 d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 309 (851)
...+|..++..+.+.|.++.|...+.++...+... +..+....++.+...|+.++|+..+++.++
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678888899999999999999998887754221 445666667778888999999988888776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.45 E-value=1.2 Score=44.94 Aligned_cols=274 Identities=13% Similarity=0.176 Sum_probs=157.3
Q ss_pred CCCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CC
Q 038852 169 ADIVPNIVSYNNLINT-YCDEGKVDEGMNVFRRIIETAPVGPS--SNTYRHLTKGFVDAGRIGEAVDLLRDMLSR---QL 242 (851)
Q Consensus 169 ~~~~pd~~~~~~Li~~-~~~~g~~~~A~~l~~~~~~~~~~~p~--~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~---g~ 242 (851)
.+..||+..-|-.-.. -.+..+.++|+.-|.++++..|.+-+ ..+...+|..+.+.+++++..+.|.+++.. .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3445665433322111 12345789999999999988765433 235566899999999999999999888642 11
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--
Q 038852 243 --GADSLVYNNLISGFLNLGNLEKANELFDELKQR-----CLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR-- 313 (851)
Q Consensus 243 --~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~-----~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~-- 313 (851)
.-+....+++++......+.+...++|+.-++. +-...-.+...|...|+..+++.+..++++.+....-.
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 123456677777766666666666666543321 12223345567888899999999988888887643111
Q ss_pred --CC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCCCccCHHHHHH----HHHHHHHcCChHHHHHHH
Q 038852 314 --MT-------PATCNTLLEVLLKHEKKEEAQALFEQMLDNH-QPPNIQAVNSDTFNI----MVNECFKHGKFSEAIETF 379 (851)
Q Consensus 314 --~~-------~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~~~~~~----L~~~~~~~g~~~~A~~~~ 379 (851)
.| ..+|..-|..|....+-.+...+|+..+... ..| .+.+... =+.+..+.|.+++|..-|
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP-----HPlImGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP-----HPLIMGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC-----chHHHhHHHHcCCccccccchHHHHHhHH
Confidence 11 2456667788888888888888888876521 112 2222221 123456778888887665
Q ss_pred HHhccCCCCCCCcc--CHHHHHHHHHHHHhcCCHHHHHHHHHH--HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038852 380 KKAGTHPKSKPFAM--DVAGYNNIIARYCENEMLEEAEKLLRE--ISTKSLSPDVTTFRTLIDAYLKVERIDDALELF 453 (851)
Q Consensus 380 ~~~~~~~~~~~~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~--m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~ 453 (851)
-++-......+... ...-|..|+.++.+.|- .-|+. +.-..-.|.+...+.|+.+|-. +++.+-.+++
T Consensus 255 FEAFKNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il 326 (440)
T KOG1464|consen 255 FEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERIL 326 (440)
T ss_pred HHHHhcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence 55544433333211 12224444444444331 01111 1111123445667778888754 4444444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.1 Score=58.48 Aligned_cols=130 Identities=15% Similarity=0.241 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHH
Q 038852 284 NATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMV 363 (851)
Q Consensus 284 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~ 363 (851)
...++..+.+.|..+.|+.+..+-. .-.+...+.|+++.|.++.++.. +...|..|+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~-----------~~~~W~~Lg 354 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELD-----------DPEKWKQLG 354 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCS-----------THHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcC-----------cHHHHHHHH
Confidence 4455555555555555555543211 12333456677777766543221 456777777
Q ss_pred HHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 038852 364 NECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKV 443 (851)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~ 443 (851)
....+.|+++-|.+.|.++.+ |..|+-.|.-.|+.+.-.++.+.....|. ++....++...
T Consensus 355 ~~AL~~g~~~lAe~c~~k~~d-------------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~l 415 (443)
T PF04053_consen 355 DEALRQGNIELAEECYQKAKD-------------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLL 415 (443)
T ss_dssp HHHHHTTBHHHHHHHHHHCT--------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhhcC-------------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHc
Confidence 777777777777777777632 55666667777777666666666555432 44445555566
Q ss_pred CCHHHHHHHHHH
Q 038852 444 ERIDDALELFNR 455 (851)
Q Consensus 444 g~~~~A~~~~~~ 455 (851)
|++++..+++.+
T Consensus 416 gd~~~cv~lL~~ 427 (443)
T PF04053_consen 416 GDVEECVDLLIE 427 (443)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 777666665544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.32 E-value=1 Score=52.60 Aligned_cols=126 Identities=15% Similarity=0.170 Sum_probs=72.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 038852 111 VQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK 190 (851)
Q Consensus 111 l~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~ 190 (851)
.+..+-..++++.+.+.+...- .-.++|..+.+.|..+-|+.+.+. ..+ -...+..+|+
T Consensus 600 FKlALi~k~ydeVl~lI~ns~L--------vGqaiIaYLqKkgypeiAL~FVkD----------~~t---RF~LaLe~gn 658 (1202)
T KOG0292|consen 600 FKLALLNKKYDEVLHLIKNSNL--------VGQAIIAYLQKKGYPEIALHFVKD----------ERT---RFELALECGN 658 (1202)
T ss_pred HHHHHHhhhhHHHHHHHHhcCc--------ccHHHHHHHHhcCCcceeeeeecC----------cch---heeeehhcCC
Confidence 3444455666766655544221 113445545566666666655432 111 1223456788
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFD 270 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~ 270 (851)
++.|++...++ . |..+|..|+....+.|+.+-|+-.|++... |..|--.|.-.|+.++-.++.+
T Consensus 659 le~ale~akkl-----d--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~ 722 (1202)
T KOG0292|consen 659 LEVALEAAKKL-----D--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMK 722 (1202)
T ss_pred HHHHHHHHHhc-----C--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHH
Confidence 88777765544 2 555788888888888888888777776553 3334444555566666665555
Q ss_pred HHH
Q 038852 271 ELK 273 (851)
Q Consensus 271 ~~~ 273 (851)
.+.
T Consensus 723 iae 725 (1202)
T KOG0292|consen 723 IAE 725 (1202)
T ss_pred HHH
Confidence 443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.1 Score=46.46 Aligned_cols=92 Identities=17% Similarity=0.133 Sum_probs=60.8
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcC
Q 038852 148 AMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS--SNTYRHLTKGFVDAG 225 (851)
Q Consensus 148 ~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~--~~~~~~Li~~~~~~g 225 (851)
++...|+++.|++.|...+.... .+...||.-..++.-.|+.++|++-++++++..+..-. ..+|.--...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P--~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAP--ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcc--cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45567777777777777765432 34566777777777777777777777777776544311 123444555666777
Q ss_pred CHHHHHHHHHHHHhcC
Q 038852 226 RIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 226 ~~~~A~~l~~~m~~~g 241 (851)
+.+.|..-|+.+.+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777777665
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=2.6 Score=46.56 Aligned_cols=91 Identities=14% Similarity=0.145 Sum_probs=65.1
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 038852 158 AVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD-AGRIGEAVDLLRD 236 (851)
Q Consensus 158 A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~-~g~~~~A~~l~~~ 236 (851)
...+|+.+..+ +.-|+..|...+..+.+.+.+.+...+|..|+...|..+|..++.+ .-... ..+++.|..+|.+
T Consensus 90 Iv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA--~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 90 IVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAA--KWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhh--hhHHhhccchHHHHHHHHH
Confidence 34556665443 3358899999998888888899999999999999998666554433 33333 3349999999999
Q ss_pred HHhcCCCCCHHHHHHHH
Q 038852 237 MLSRQLGADSLVYNNLI 253 (851)
Q Consensus 237 m~~~g~~pd~~~~~~Li 253 (851)
.++.+.. +...|....
T Consensus 166 gLR~npd-sp~Lw~eyf 181 (568)
T KOG2396|consen 166 GLRFNPD-SPKLWKEYF 181 (568)
T ss_pred HhhcCCC-ChHHHHHHH
Confidence 9988655 555554433
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.20 E-value=1.5 Score=44.22 Aligned_cols=121 Identities=13% Similarity=0.137 Sum_probs=49.4
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 038852 150 YRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCD-EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIG 228 (851)
Q Consensus 150 ~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~-~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~ 228 (851)
.+..+-..|+.+.++++..+.-.-++..|...+ +.. ..++.+-++.++++++.++. |-.+|..-=......|+..
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~i--L~~l~~dL~~El~~l~eI~e~npK--NYQvWHHRr~ive~l~d~s 129 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVI--LRHLMSDLNKELEYLDEIIEDNPK--NYQVWHHRRVIVELLGDPS 129 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHH--HHHhHHHHHHHHHHHHHHHHhCcc--chhHHHHHHHHHHHhcCcc
Confidence 344445555555555554332222222222211 111 12344445555555554433 3334433333333333433
Q ss_pred -HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 229 -EAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 229 -~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
.-+++.++|+..+-+ +-.+|..---++...++++.-+.+..++++.
T Consensus 130 ~rELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~ 176 (318)
T KOG0530|consen 130 FRELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEE 176 (318)
T ss_pred cchHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 444444445443322 3344444444444444444444444444443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.69 Score=54.61 Aligned_cols=91 Identities=9% Similarity=0.019 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHH
Q 038852 286 TFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNE 365 (851)
Q Consensus 286 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~ 365 (851)
....++.-.|.+|.|++++-+ ......+.+. ++-++...|-+......-..++.....-. ...-+..|+..
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH---~AIaL~~~gLL~~~~~~~~~lls~~~~~~----~~ln~arLI~~ 333 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVH---FAIALAYYGLLRVSDSSSAPLLSVDPGDP----PPLNFARLIGQ 333 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT----T-HHHHHH---HHHHHHHTT----------------------------HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHh--hccCcccHHH---HHHHHHHcCCCCCCCccccceeeecCCCC----CCcCHHHHHHH
Confidence 344556778889998888776 1111122222 33333333433322222233332111100 12456777777
Q ss_pred HHH---cCChHHHHHHHHHhccC
Q 038852 366 CFK---HGKFSEAIETFKKAGTH 385 (851)
Q Consensus 366 ~~~---~g~~~~A~~~~~~~~~~ 385 (851)
|.+ ..+..+|+++|--+...
T Consensus 334 Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 334 YTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHHhccCHHHHHHHHHHHHHc
Confidence 765 45677888888776543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.55 Score=47.31 Aligned_cols=226 Identities=11% Similarity=0.031 Sum_probs=131.4
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH-cCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHH
Q 038852 327 LKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK-HGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARY 405 (851)
Q Consensus 327 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~ 405 (851)
.+..+...|+++-+.++..+.. +..+|..--.++.. ..++.+-+++++++.+..++ +..+|..--...
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpA------nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK-----NYQvWHHRr~iv 122 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPA------NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK-----NYQVWHHRRVIV 122 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcc------cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc-----chhHHHHHHHHH
Confidence 3445567777888777774332 34444333222222 23466777888887766555 666665444444
Q ss_pred HhcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHH--
Q 038852 406 CENEMLE-EAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVA-- 482 (851)
Q Consensus 406 ~~~g~~~-~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~-- 482 (851)
...|+.. .-+++.++|+...-+ +-.+|..--.++...+.++.-+.+..++++.++..+..|...++......|-.+
T Consensus 123 e~l~d~s~rELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~ 201 (318)
T KOG0530|consen 123 ELLGDPSFRELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKA 201 (318)
T ss_pred HHhcCcccchHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHH
Confidence 4456665 667788888774333 666777777777778889999999999999988888777654332222222222
Q ss_pred ---HHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH------hcCC
Q 038852 483 ---ECAPILTKMGEKDPKPDFLIYDVVVRGLCN-EG--LFDMSKDIVDQMMKYGVGITPALQDFVRETFG------KAGR 550 (851)
Q Consensus 483 ---~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~-~g--~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~------~~G~ 550 (851)
.-+.+..+++.. +.-|...|+.|...+.. .| ...+...+...+...--.-.+....+|+++|. +.+.
T Consensus 202 ~le~El~yt~~~I~~-vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~ 280 (318)
T KOG0530|consen 202 ELERELNYTKDKILL-VPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSA 280 (318)
T ss_pred HHHHHHHHHHHHHHh-CCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccc
Confidence 223334444443 33366777766655553 34 13344455555542222356677777777772 2344
Q ss_pred HH---HHHHHHHhhhhcC
Q 038852 551 GE---EIERVLNADRWGY 565 (851)
Q Consensus 551 ~~---eA~~ll~~~~~~~ 565 (851)
-+ +|.++++.+..++
T Consensus 281 ~~~a~~a~~ly~~La~~~ 298 (318)
T KOG0530|consen 281 EELARKAVKLYEDLAIKV 298 (318)
T ss_pred hHHHHHHHHHHHHHhhcc
Confidence 44 6777777766443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=4.3 Score=48.15 Aligned_cols=54 Identities=9% Similarity=0.142 Sum_probs=25.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 323 LEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 323 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
+......++++.+...+..|-..... ...-..-++.++...|+.++|..+|+.+
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~------~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKE------KDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhcc------CHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333555555555555544321111 2334445555555555555555555554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=2.4 Score=44.68 Aligned_cols=78 Identities=9% Similarity=0.036 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhcCCCCCHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGR----IGEAVDLLRDMLSRQLGADSLVY 249 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~----~~~A~~l~~~m~~~g~~pd~~~~ 249 (851)
|.......+.++...|. +++...+.++... .|...-...+.++...|+ ..+++.++..+... .+|..+-
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCSS----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 44445555555555554 2333444444332 144444555555666554 24566666655333 2244444
Q ss_pred HHHHHHHHh
Q 038852 250 NNLISGFLN 258 (851)
Q Consensus 250 ~~Li~~~~~ 258 (851)
...+.++..
T Consensus 109 ~~A~~aLG~ 117 (280)
T PRK09687 109 ASAINATGH 117 (280)
T ss_pred HHHHHHHhc
Confidence 444444433
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.06 E-value=1.3 Score=51.88 Aligned_cols=79 Identities=6% Similarity=0.021 Sum_probs=49.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038852 478 KGKVAECAPILTKMGEKDPKPDF--LIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIE 555 (851)
Q Consensus 478 ~g~~~~A~~ll~~m~~~~~~pd~--~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~ 555 (851)
.+..+.++++-.-.....+.|-. .++...+..+.+.+++..|..+..++++.+..++.......+...+. .+..+|.
T Consensus 1060 ~~~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~e-knp~Da~ 1138 (1202)
T KOG0292|consen 1060 KPNLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAE-KNPTDAY 1138 (1202)
T ss_pred CchHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhh-cCccccc
Confidence 34566665555555555555543 45667788899999999999999999988755554443333333333 3344444
Q ss_pred HH
Q 038852 556 RV 557 (851)
Q Consensus 556 ~l 557 (851)
++
T Consensus 1139 ~l 1140 (1202)
T KOG0292|consen 1139 EL 1140 (1202)
T ss_pred cc
Confidence 43
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.099 Score=56.70 Aligned_cols=106 Identities=11% Similarity=0.003 Sum_probs=62.2
Q ss_pred HHhcCCHHHHHHHHHHHHhC---C--CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------cCCcc------
Q 038852 405 YCENEMLEEAEKLLREISTK---S--LSP---DVTTFRTLIDAYLKVERIDDALELFNRMVE-------SGLRV------ 463 (851)
Q Consensus 405 ~~~~g~~~~A~~l~~~m~~~---g--~~p---d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~-------~~~~~------ 463 (851)
+...|++.+|.+++...--. | +.| ....||.|+..+...|.+..+..+|.+++. .|+++
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 44466777777666543111 1 111 123356666666667777777777766663 23222
Q ss_pred -----chhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038852 464 -----VVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCN 512 (851)
Q Consensus 464 -----~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~ 512 (851)
...+|+ ....|...|+.-.|.+.|.+.... +.-+...|..|..+|..
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 222333 455677788888888888777654 33477788888888764
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.44 Score=50.49 Aligned_cols=160 Identities=11% Similarity=0.057 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--c----CCHHHHHHHHHHHHHcCCcc----chhHHHHHHHHHHHcCC
Q 038852 411 LEEAEKLLREISTKSLSPDVTTFRTLIDAYLK--V----ERIDDALELFNRMVESGLRV----VVSFGTKVFNELITKGK 480 (851)
Q Consensus 411 ~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~--~----g~~~~A~~~~~~m~~~~~~~----~~~~~~~L~~~~~~~g~ 480 (851)
+++.+.+++.|.+.|+.-+..+|.+....... . ....+|.++|+.|.+...-. +..+.. ++ +. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~-lL-A~-~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAA-LL-AM-TSED 154 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHH-HH-hc-cccc
Confidence 45667788888888888777666553333322 2 23567889999998864322 222211 11 11 2222
Q ss_pred ----HHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHh-cCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 038852 481 ----VAECAPILTKMGEKDPKPD-FLIYDVVVRGLCN-EGL--FDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGE 552 (851)
Q Consensus 481 ----~~~A~~ll~~m~~~~~~pd-~~~~~~ll~a~~~-~g~--~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~ 552 (851)
.+++..+|+.+.+.|+..+ ..-+.+-+-+++. ... ..++.++++.+.+.|+++....|..++-+-.-.+..+
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~ 234 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEE 234 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchH
Confidence 3566777888888776543 3233333333322 211 5578888999999999888888777765555555554
Q ss_pred HHHHHHHhhhhcCCCCCCCCC
Q 038852 553 EIERVLNADRWGYAAPVPPPR 573 (851)
Q Consensus 553 eA~~ll~~~~~~~~~~p~~~~ 573 (851)
+..+-+.++.....+.++..|
T Consensus 235 ~~~~~i~ev~~~L~~~k~~~~ 255 (297)
T PF13170_consen 235 KIVEEIKEVIDELKEQKGFGW 255 (297)
T ss_pred HHHHHHHHHHHHHhhCcccCh
Confidence 666666665555554444433
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.88 Score=53.74 Aligned_cols=90 Identities=16% Similarity=0.029 Sum_probs=41.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHH
Q 038852 322 LLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNI 401 (851)
Q Consensus 322 Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~l 401 (851)
...++.-.|.++.|++++-+... +..--..++.++...|-+......-..+........ ...-+..|
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~~----------~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~---~~ln~arL 330 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNEF----------NRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDP---PPLNFARL 330 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT--T-----------HHHHHHHHHHHHHTT---------------------------HHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhhcc----------CcccHHHHHHHHHHcCCCCCCCccccceeeecCCCC---CCcCHHHH
Confidence 45666778999999999887111 222333444444455544333332233332222211 11447778
Q ss_pred HHHHHh---cCCHHHHHHHHHHHHhC
Q 038852 402 IARYCE---NEMLEEAEKLLREISTK 424 (851)
Q Consensus 402 i~~~~~---~g~~~~A~~l~~~m~~~ 424 (851)
|..|++ ..+..+|+++|--+...
T Consensus 331 I~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 331 IGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 888876 56788898888776654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.14 Score=46.69 Aligned_cols=84 Identities=13% Similarity=0.162 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHH--------------HcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFF--------------DQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~--------------~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
..++..+|.++++.|+.+....+++... ......|+..+..+++.+|+..|++..|+++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3445555666666666666655555432 12233455556666666666666666666666666665
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 038852 205 APVGPSSNTYRHLTKGFV 222 (851)
Q Consensus 205 ~~~~p~~~~~~~Li~~~~ 222 (851)
.++..+..+|..|+.-..
T Consensus 82 Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 555555556655555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=1.3 Score=49.53 Aligned_cols=117 Identities=10% Similarity=0.090 Sum_probs=77.8
Q ss_pred HHHHHHHHcCCC--CCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 038852 125 YLARQAVFSRIR--PTVFTCNAIIAAMYR-AKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRI 201 (851)
Q Consensus 125 ~l~~~~~~~~~~--~~~~~~~~li~~~~~-~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~ 201 (851)
.+...++..+.. +....+..+..+|.+ .|+..+|+.++...+.-..-.-......+|+..+.+.|...+|--++..+
T Consensus 196 ~~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA 275 (886)
T KOG4507|consen 196 DDIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAA 275 (886)
T ss_pred HHHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehh
Confidence 344444444433 233444556666665 69999999998887553221112335667888889999999888888777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 038852 202 IETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG 243 (851)
Q Consensus 202 ~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~ 243 (851)
.+..++- ..-+..+..+++..+++...+..|+...+.+..
T Consensus 276 ~~dA~~~--t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~ 315 (886)
T KOG4507|consen 276 LDDADFF--TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPG 315 (886)
T ss_pred ccCCccc--cccceeHHHHHHHHhhhhhhhhhhhhhhccCcc
Confidence 6654331 123667888888999999888888888877644
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.65 Score=55.61 Aligned_cols=29 Identities=7% Similarity=0.200 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhccCC
Q 038852 358 TFNIMVNECFKHGKFSEAIETFKKAGTHP 386 (851)
Q Consensus 358 ~~~~L~~~~~~~g~~~~A~~~~~~~~~~~ 386 (851)
-|..|+..|...|+.++|+++|.+.....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~ 534 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDED 534 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccc
Confidence 56778888888888888888888876543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.39 Score=44.76 Aligned_cols=42 Identities=5% Similarity=0.152 Sum_probs=18.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD 223 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~ 223 (851)
.++..+...+.....+.+++.++..+. .+....+.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~--~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS--ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc--cchhHHHHHHHHHHH
Confidence 344444444444455555554444432 233344444444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.7 Score=48.98 Aligned_cols=132 Identities=10% Similarity=0.136 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH--cC----ChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHH
Q 038852 332 KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK--HG----KFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARY 405 (851)
Q Consensus 332 ~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~--~g----~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~ 405 (851)
+++.+.+++.+.+.|+.- +..+|......... .. ...+|.++|+.|.+..+.-.-. +...+..|+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~-----~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~-~D~~~a~lLA~- 150 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKR-----SEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP-EDYPFAALLAM- 150 (297)
T ss_pred HHHHHHHHHHHHHhccCc-----cChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc-cchhHHHHHhc-
Confidence 344566777777776664 33333332222222 11 2456677777776554432222 22333333322
Q ss_pred HhcCC----HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCccchhHHHHH
Q 038852 406 CENEM----LEEAEKLLREISTKSLSPDV--TTFRTLIDAYLKVER--IDDALELFNRMVESGLRVVVSFGTKV 471 (851)
Q Consensus 406 ~~~g~----~~~A~~l~~~m~~~g~~pd~--~~~~~Ll~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~L 471 (851)
..++ .++++.+|+.+.+.|+..+. .....++..+..... ..++.++++.+.+.+++.....|..+
T Consensus 151 -~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 151 -TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred -ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 2222 35566777777776655432 222333322221111 45677788888888877766666644
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.74 E-value=3.5 Score=43.86 Aligned_cols=47 Identities=19% Similarity=0.218 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC
Q 038852 412 EEAEKLLREISTKSLSPDVTTFRTLIDAYLK----VERIDDALELFNRMVESGL 461 (851)
Q Consensus 412 ~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~----~g~~~~A~~~~~~m~~~~~ 461 (851)
..|+..|.++...+ +......|+.+|.. ..++++|..+|+++.+.|.
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 46777777777664 45555556655543 3478888888888888875
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.4 Score=44.68 Aligned_cols=129 Identities=7% Similarity=0.133 Sum_probs=76.8
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
.....++..+...+.......+++.++..+ ..+....|.++..|++.+ .++.++.++. . .+......+++.
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~----~~~yd~~~~~~~ 78 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K----SNHYDIEKVGKL 78 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c----cccCCHHHHHHH
Confidence 455667777777778888888888877665 356677788888777653 3344444431 1 122234456666
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA-GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN 258 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~-g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~ 258 (851)
|.+.+.++++..++.++- -|...+..+... ++++.|++++.+.. +...|..++..+..
T Consensus 79 c~~~~l~~~~~~l~~k~~----------~~~~Al~~~l~~~~d~~~a~~~~~~~~------~~~lw~~~~~~~l~ 137 (140)
T smart00299 79 CEKAKLYEEAVELYKKDG----------NFKDAIVTLIEHLGNYEKAIEYFVKQN------NPELWAEVLKALLD 137 (140)
T ss_pred HHHcCcHHHHHHHHHhhc----------CHHHHHHHHHHcccCHHHHHHHHHhCC------CHHHHHHHHHHHHc
Confidence 777777777777776652 122233333433 66777777666421 55566666666553
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.69 E-value=1.8 Score=46.72 Aligned_cols=61 Identities=10% Similarity=0.107 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHH
Q 038852 228 GEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEW 290 (851)
Q Consensus 228 ~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~ 290 (851)
+.-+.+|+++++.+.. +...+..++..+.+..+.++..+.+++++..... +..+|..+++.
T Consensus 48 E~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~ 108 (321)
T PF08424_consen 48 ERKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHH
Confidence 3445555665555443 5555555666666666666666666666655433 44445444443
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.68 E-value=5.8 Score=46.07 Aligned_cols=67 Identities=19% Similarity=0.154 Sum_probs=37.6
Q ss_pred CCCccHHHHHHHHHHcCCHHHHHHHHHHHHH-cCC--CCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHcC
Q 038852 102 GPRLNLHNRVQSLIRAGDLDAASYLARQAVF-SRI--RPTVFTCNAIIAAMYR-AKRYDDAVALFKYFFDQA 169 (851)
Q Consensus 102 ~~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~-~~~--~~~~~~~~~li~~~~~-~g~~~~A~~l~~~~~~~~ 169 (851)
-|++-...-++.++.+.++.+|..+.+.-.- .++ .-|...+..-+..+.. +++. +-+.+|-+.+...
T Consensus 661 yPrImvLa~Vrk~i~akkYkdAf~vCrthrv~l~Il~DydpelfienlevFv~~~~rv-dyl~lF~~~L~~d 731 (1243)
T COG5290 661 YPRIMVLAFVRKLIAAKKYKDAFDVCRTHRVPLGILLDYDPELFIENLEVFVTECRRV-DYLSLFSEALQRD 731 (1243)
T ss_pred cceeeeHHHHHHHHHHhhhhHHHHHHHheeeccceeecCChHHHHhhHHHHHHhhhhh-hHHHHHHHhcChh
Confidence 3455667788999999999999998876321 111 2233333332333332 2333 3455666665543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.28 Score=44.66 Aligned_cols=58 Identities=17% Similarity=0.099 Sum_probs=44.9
Q ss_pred CCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcC
Q 038852 387 KSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREIST-KSLSPDVTTFRTLIDAYLKVE 444 (851)
Q Consensus 387 ~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~~~~~Ll~~~~~~g 444 (851)
...+..|+..+..+++.+|+..|++..|+++++.+.+ .+++.+..+|..|+.-+...-
T Consensus 44 ~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 44 PSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 5566778888889999999999999999998888765 356667788888887655443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.65 E-value=2.1 Score=43.72 Aligned_cols=202 Identities=9% Similarity=0.050 Sum_probs=114.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHcCChhHHHHHHHH---HHHcCCCCCCHHH
Q 038852 108 HNRVQSLIRAGDLDAASYLARQAVFSRIRPTVF-------TCNAIIAAMYRAKRYDDAVALFKY---FFDQADIVPNIVS 177 (851)
Q Consensus 108 ~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~l~~~---~~~~~~~~pd~~~ 177 (851)
..+++.+.+.+++++|+.++.+++..|...|.. +...+...|...|++..-.++... ++....-...+..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 467788899999999999999999888765543 444677788888887765444332 2222111123334
Q ss_pred HHHHHHHHHHc-CChHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HhcCCCCCHHH
Q 038852 178 YNNLINTYCDE-GKVDEGMNVFRRIIETAPVG----PSSNTYRHLTKGFVDAGRIGEAVDLLRDM----LSRQLGADSLV 248 (851)
Q Consensus 178 ~~~Li~~~~~~-g~~~~A~~l~~~~~~~~~~~----p~~~~~~~Li~~~~~~g~~~~A~~l~~~m----~~~g~~pd~~~ 248 (851)
..+||..+-.. ..++.-++++...++..... .....-..+|..+.+.|.+.+|+.+...+ .+.+-+++..+
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 45555544332 44666666666655432110 01112245778888999999998866544 44444444332
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHHHHHhcC----CccchhhHHHHHHH--HHHcCCHHHHHHHHHHHHH
Q 038852 249 YN-NLISGFLNLGNLEKANELFDELKQRC----LVYDGVVNATFMEW--WFNQGKDKEAMQSYKSLME 309 (851)
Q Consensus 249 ~~-~Li~~~~~~g~~~~A~~~~~~~~~~~----~~~d~~~~~~li~~--~~~~g~~~~A~~l~~~~~~ 309 (851)
.. .=-.+|.+..++.++..-+..+.... ..|-...-..|+.+ .|...++..|..+|-+..+
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 22 22345666667776666665544321 11122222223322 3445567777777776665
|
|
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.61 E-value=1 Score=48.61 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038852 469 TKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGV 531 (851)
Q Consensus 469 ~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~ 531 (851)
.+|+.-|...|++.+|..+++++--- +--..+.+.+++.+..+.|+-...+.+++...+.|+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 35778888889999998888776432 112456777888888888887777888877776654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.2 Score=48.28 Aligned_cols=91 Identities=12% Similarity=0.261 Sum_probs=45.4
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 038852 148 AMYRAKRYDDAVALFKYFFDQADIVPN---IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA 224 (851)
Q Consensus 148 ~~~~~g~~~~A~~l~~~~~~~~~~~pd---~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~ 224 (851)
-+++.|+|++|..-|.+++......+. .+.|..-+.++++.+.++.|++-..++++.++. ...+....+.+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt--y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT--YEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch--hHHHHHHHHHHHHhh
Confidence 344556666666666555543221111 234444455555555555555555555555433 333333334455555
Q ss_pred CCHHHHHHHHHHHHhc
Q 038852 225 GRIGEAVDLLRDMLSR 240 (851)
Q Consensus 225 g~~~~A~~l~~~m~~~ 240 (851)
..+++|++-|.++++.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 5555555555555554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.39 Score=46.31 Aligned_cols=91 Identities=20% Similarity=0.211 Sum_probs=55.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHH
Q 038852 291 WFNQGKDKEAMQSYKSLMERNFRMT----PATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNEC 366 (851)
Q Consensus 291 ~~~~g~~~~A~~l~~~~~~~~~~~~----~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~ 366 (851)
+++.|++++|..-|.++++...... .+.|..-+.++.+.++++.|++-..++++.+.. ...++..-+.+|
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt------y~kAl~RRAeay 178 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT------YEKALERRAEAY 178 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch------hHHHHHHHHHHH
Confidence 4455555555555555554432221 234555566777777777777777777764332 344555556677
Q ss_pred HHcCChHHHHHHHHHhccCCC
Q 038852 367 FKHGKFSEAIETFKKAGTHPK 387 (851)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~~~ 387 (851)
.+..++++|++-|+++.+..+
T Consensus 179 ek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCc
Confidence 777788888888877766544
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.56 E-value=2 Score=45.63 Aligned_cols=116 Identities=12% Similarity=0.044 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-----
Q 038852 190 KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD----AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG----- 260 (851)
Q Consensus 190 ~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g----- 260 (851)
+..+|+++|..+.+.+ +......|...|.. ..+..+|..+|+++.+.|...-..+...+...|..-+
T Consensus 92 ~~~~A~~~~~~~a~~g----~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 92 DKTKAADWYRCAAADG----LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cHHHHHHHHHHHhhcc----cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 3555666666544432 33344445555444 2356666666666666654321222334444443321
Q ss_pred --CHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhcC
Q 038852 261 --NLEKANELFDELKQRCLVYDGVVNATFMEWWFN----QGKDKEAMQSYKSLMERNF 312 (851)
Q Consensus 261 --~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~~ 312 (851)
+...|...|.++...+ +......+..+|.. ..+.++|...|+...+.+.
T Consensus 168 ~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 168 AYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 2235666666655554 33344444444433 2366677777777766654
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.52 E-value=6.6 Score=45.63 Aligned_cols=63 Identities=16% Similarity=0.274 Sum_probs=34.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCC--CCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCC
Q 038852 144 AIIAAMYRAKRYDDAVALFKYFFDQADIV--PNIVSYNNLINTYCD-EGKVDEGMNVFRRIIETAPV 207 (851)
Q Consensus 144 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~--pd~~~~~~Li~~~~~-~g~~~~A~~l~~~~~~~~~~ 207 (851)
+.++-+....+|.+|..+.+.-.-..++- -|...|..=+..+.. +++. +-+.+|-++++.+.+
T Consensus 668 a~Vrk~i~akkYkdAf~vCrthrv~l~Il~DydpelfienlevFv~~~~rv-dyl~lF~~~L~~ddv 733 (1243)
T COG5290 668 AFVRKLIAAKKYKDAFDVCRTHRVPLGILLDYDPELFIENLEVFVTECRRV-DYLSLFSEALQRDDV 733 (1243)
T ss_pred HHHHHHHHHhhhhHHHHHHHheeeccceeecCChHHHHhhHHHHHHhhhhh-hHHHHHHHhcChhhc
Confidence 44556777889999999887653222221 233333332333433 2333 356677777665434
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.043 Score=39.62 Aligned_cols=40 Identities=25% Similarity=0.461 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
+|..+..+|...|++++|+++|+++++.+|. |...|..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~--~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD--DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--CHHHHHHhh
Confidence 3555666666666666666666666666555 445554443
|
|
| >KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.36 E-value=4 Score=48.18 Aligned_cols=94 Identities=9% Similarity=0.087 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHc---C----CHHHHHHHHHHHhh-CCCCC---CHHH
Q 038852 434 RTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITK---G----KVAECAPILTKMGE-KDPKP---DFLI 502 (851)
Q Consensus 434 ~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~---g----~~~~A~~ll~~m~~-~~~~p---d~~~ 502 (851)
...++-+...|++++|+.+|..+.+.+. ....+...|..+.... + +...-..-+..+.+ ....+ ...|
T Consensus 626 ~~vA~~a~~~G~~~~sI~LY~lag~yd~-al~link~LS~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~~~~~~~~t 704 (835)
T KOG2168|consen 626 LEVASEADEDGLFEDAILLYHLAGDYDK-ALELINKLLSQVLHSPTLGQSNKERLGDLALSMNDIYESNKGDSAKVVVKT 704 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHhccCcchhhHHHH
Confidence 3445556677888888888877765431 0111111122222221 1 11111111222222 22222 2335
Q ss_pred HHHHHHHH-----HhcCChHHHHHHHHHHHH
Q 038852 503 YDVVVRGL-----CNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 503 ~~~ll~a~-----~~~g~~~~A~~~~~~m~~ 528 (851)
+..|+..+ +..|++++|+.+++.+.-
T Consensus 705 ~~lLl~~~~~f~~y~~~~~e~aL~~le~l~L 735 (835)
T KOG2168|consen 705 LSLLLDLVSFFDLYHNGEWEEALSILEHLDL 735 (835)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 55555432 467888888888887763
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.37 Score=56.52 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=18.8
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQ 129 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~ 129 (851)
..+...+..++-.|.++.|..+++.
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4677888888888888888888743
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.47 Score=46.25 Aligned_cols=61 Identities=11% Similarity=0.174 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGAD--SLVYNNLISGFLNLGNLEKANELFDELK 273 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~Li~~~~~~g~~~~A~~~~~~~~ 273 (851)
.+..++..|++.|++++|++.|.++.+....+. ...+..+|+.+...+++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455555555556666666666555555432221 1334445555555555555555555443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.4 Score=41.62 Aligned_cols=127 Identities=14% Similarity=0.128 Sum_probs=68.3
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchh---hHHHHHHHHHHcCCH
Q 038852 222 VDAGRIGEAVDLLRDMLSRQLGADS-LVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGV---VNATFMEWWFNQGKD 297 (851)
Q Consensus 222 ~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~---~~~~li~~~~~~g~~ 297 (851)
...++.++|+.-|..+.+.|..--. .....+.......|+...|...|+++-.....|... ....-...+...|.|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3455666666666666665544221 122223344556666666666666665544333222 111112234456666
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 038852 298 KEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQP 348 (851)
Q Consensus 298 ~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~ 348 (851)
+......+-+...+-..-...-..|..+-.+.|++.+|...|..+......
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~a 199 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQA 199 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccC
Confidence 666666555544443333344556666667777777777777777664333
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.91 Score=42.87 Aligned_cols=128 Identities=12% Similarity=0.081 Sum_probs=75.8
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHH
Q 038852 327 LKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYC 406 (851)
Q Consensus 327 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~ 406 (851)
...++.++|+.-|..+.+.|...- -......++......|+...|+..|+++........+..|.. -..-...+.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~Y----pvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A-Rlraa~lLv 143 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSY----PVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA-RLRAAYLLV 143 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcc----hHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH-HHHHHHHHh
Confidence 456677777777777777654421 223344555666777888888888887754322211111111 111223355
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 038852 407 ENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVES 459 (851)
Q Consensus 407 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 459 (851)
..|.++.....++-+...+-.-....-..|+-+-.+.|++.+|.++|..+.+.
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 67777777777766654433323344566777777888888888888877764
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.14 Score=53.18 Aligned_cols=96 Identities=13% Similarity=0.086 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038852 143 NAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFV 222 (851)
Q Consensus 143 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~ 222 (851)
.--++-|++.|.|++|+.+|.+.+.... -|.+++..-+.+|.+..+|..|..-.+.++..+.. -+.+|...+.+-.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P--~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~--Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYP--HNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL--YVKAYSRRMQARE 176 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCC--CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH--HHHHHHHHHHHHH
Confidence 3456677788888888888877665432 26677777777788888887777777777665422 3445555555556
Q ss_pred HcCCHHHHHHHHHHHHhcCC
Q 038852 223 DAGRIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 223 ~~g~~~~A~~l~~~m~~~g~ 242 (851)
..|+..+|.+-++.+++...
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEP 196 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCc
Confidence 66677777777777666533
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.77 E-value=2.8 Score=40.66 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=65.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038852 360 NIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDA 439 (851)
Q Consensus 360 ~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~ 439 (851)
..++..+...+++++|+..++.......+..+ ...+-..|.+.....|.+|+|+++++...+.+. .......-+++
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~l--k~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDi 168 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENL--KALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHH--HHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhH
Confidence 34556777888888888888877654333211 122334466677778888888888887664422 23345556778
Q ss_pred HHHcCCHHHHHHHHHHHHHcC
Q 038852 440 YLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 440 ~~~~g~~~~A~~~~~~m~~~~ 460 (851)
+...|+-++|+..|++.++.+
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHcCchHHHHHHHHHHHHcc
Confidence 888888888888888888765
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=6.5 Score=41.45 Aligned_cols=59 Identities=12% Similarity=0.085 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHH
Q 038852 210 SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNL----EKANELFDEL 272 (851)
Q Consensus 210 ~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~----~~A~~~~~~~ 272 (851)
|..+....+.++...|. .++...+..+... .|...-...+.++...|+- +++..++..+
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 44455555556655553 3333333333322 2455555556666666652 3455555544
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=94.73 E-value=3.9 Score=42.59 Aligned_cols=27 Identities=19% Similarity=0.438 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 038852 355 NSDTFNIMVNECFKHGKFSEAIETFKK 381 (851)
Q Consensus 355 ~~~~~~~L~~~~~~~g~~~~A~~~~~~ 381 (851)
+......++..|.+.|++.+|+..|-.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 667777777777777777777776643
|
; PDB: 3LKU_E 2WPV_G. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=94.72 E-value=2.8 Score=45.87 Aligned_cols=57 Identities=12% Similarity=0.060 Sum_probs=34.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHH
Q 038852 288 MEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLL-KHEKKEEAQALFEQMLD 344 (851)
Q Consensus 288 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~-~~g~~~~A~~l~~~m~~ 344 (851)
+..+.+.|.+..|+++.+-++..++..|+.....+|+.|+ +.++++--+++++....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3445666667777777777666666555555555555543 45566666666665443
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.98 Score=42.55 Aligned_cols=54 Identities=24% Similarity=0.336 Sum_probs=29.5
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 038852 151 RAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAP 206 (851)
Q Consensus 151 ~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~ 206 (851)
+.++.+++..+++.+.-..+..+...++..++ ++..|+|++|+.+|+++.+..+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERAP 75 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccCC
Confidence 45666666666666543333223333333333 5566777777777777655443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.1 Score=37.63 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
+|..++.+|.+.|++++|+++|+++++.... |...|..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 5667777777777777777777777777655 666665554
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.59 E-value=4.6 Score=42.16 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCCC
Q 038852 170 DIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS----RQLGAD 245 (851)
Q Consensus 170 ~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~----~g~~pd 245 (851)
.+.-|...++.|... +..++++--+..+++.+..|..--..++...+..|++.||.+.|++.+++..+ .|.+.|
T Consensus 65 ~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 344455555554432 22233333334444433333322345677778888888888888877766544 455656
Q ss_pred HHHHHH
Q 038852 246 SLVYNN 251 (851)
Q Consensus 246 ~~~~~~ 251 (851)
++.+..
T Consensus 143 Vvf~~i 148 (393)
T KOG0687|consen 143 VVFYKI 148 (393)
T ss_pred hHHHHH
Confidence 655544
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=94.58 E-value=3.2 Score=48.74 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 430 VTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 430 ~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
......++..|.+.|-.+.|.++++.+-.
T Consensus 405 ~~~~~k~l~iC~~~~L~~~a~~I~~~~~~ 433 (566)
T PF07575_consen 405 NDDAEKLLEICAELGLEDVAREICKILGQ 433 (566)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445566666666666666666665544
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.53 E-value=5.7 Score=42.92 Aligned_cols=135 Identities=10% Similarity=0.097 Sum_probs=77.7
Q ss_pred hHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHH
Q 038852 372 FSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLK---VERIDD 448 (851)
Q Consensus 372 ~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~---~g~~~~ 448 (851)
.+.-+.+|+++++..+. +...+..++..+.+..+.++..+.+++++.... -+...|...++.... .-.+++
T Consensus 47 ~E~klsilerAL~~np~-----~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~-~~~~LW~~yL~~~q~~~~~f~v~~ 120 (321)
T PF08424_consen 47 AERKLSILERALKHNPD-----SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP-GSPELWREYLDFRQSNFASFTVSD 120 (321)
T ss_pred HHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHhccCcHHH
Confidence 34556667776665443 667777777777777777777788888776522 256677777665544 234666
Q ss_pred HHHHHHHHHHcCCccchhHHHHHHHHHHHc-CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038852 449 ALELFNRMVESGLRVVVSFGTKVFNELITK-GKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMM 527 (851)
Q Consensus 449 A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~-g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~ 527 (851)
...+|.+.+.. |....... ........+-..| ..++..+...+..+|..+.|+.++.-++
T Consensus 121 ~~~~y~~~l~~-----------L~~~~~~~~~~~~~~~~~e~~~--------l~v~~r~~~fl~~aG~~E~Ava~~Qa~l 181 (321)
T PF08424_consen 121 VRDVYEKCLRA-----------LSRRRSGRMTSHPDLPELEEFM--------LYVFLRLCRFLRQAGYTERAVALWQALL 181 (321)
T ss_pred HHHHHHHHHHH-----------HHHhhccccccccchhhHHHHH--------HHHHHHHHHHHHHCCchHHHHHHHHHHH
Confidence 66666666542 10000000 0000000011111 1133334455677899999999999999
Q ss_pred HcCC
Q 038852 528 KYGV 531 (851)
Q Consensus 528 ~~g~ 531 (851)
+.++
T Consensus 182 E~n~ 185 (321)
T PF08424_consen 182 EFNF 185 (321)
T ss_pred HHHc
Confidence 8765
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.84 Score=44.48 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=43.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHH----
Q 038852 286 TFMEWWFNQGKDKEAMQSYKSLMERNFRM--TPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTF---- 359 (851)
Q Consensus 286 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~--~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~---- 359 (851)
.+++.|++.|+.++|++.|.++.+....+ -...+-.+|......+++..+...+.++...-...+ +....
T Consensus 41 ~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~----d~~~~nrlk 116 (177)
T PF10602_consen 41 DLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG----DWERRNRLK 116 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc----hHHHHHHHH
Confidence 33344444444444444444443332211 112344455566666666666666555543211111 11111
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhcc
Q 038852 360 NIMVNECFKHGKFSEAIETFKKAGT 384 (851)
Q Consensus 360 ~~L~~~~~~~g~~~~A~~~~~~~~~ 384 (851)
..-+..+...+++.+|-+.|-.+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 1222334456788888877776643
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.23 Score=51.63 Aligned_cols=90 Identities=13% Similarity=0.113 Sum_probs=42.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHH
Q 038852 220 GFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKE 299 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~ 299 (851)
-|.+.|+|++|+++|.+.+..... |.+++...+.+|.+...+..|+.-...++..+.. -...|..-+.+-...|+.++
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhHHH
Confidence 445555555555555555544222 4555555555555555555555544444433211 12233333333344445555
Q ss_pred HHHHHHHHHHhc
Q 038852 300 AMQSYKSLMERN 311 (851)
Q Consensus 300 A~~l~~~~~~~~ 311 (851)
|.+-++.+++..
T Consensus 184 AKkD~E~vL~LE 195 (536)
T KOG4648|consen 184 AKKDCETVLALE 195 (536)
T ss_pred HHHhHHHHHhhC
Confidence 555555544443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.52 Score=52.70 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=50.3
Q ss_pred HcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 038852 368 KHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERID 447 (851)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~ 447 (851)
+.|+++.|.++..++. +..-|..|.++....+++..|.+.|.+..+ |..|+-.+...|+-+
T Consensus 649 ~lgrl~iA~~la~e~~----------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN----------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAE 709 (794)
T ss_pred hcCcHHHHHHHHHhhc----------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChh
Confidence 5566666665555442 334466666666666666666666554432 334444455555544
Q ss_pred HHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 448 DALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKM 491 (851)
Q Consensus 448 ~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m 491 (851)
.-..+-....+.|. . +..+.+|...|+++++++++.+-
T Consensus 710 ~l~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 710 GLAVLASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 44444444443331 1 22334555566666666655443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.46 Score=53.12 Aligned_cols=152 Identities=16% Similarity=0.116 Sum_probs=87.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChH
Q 038852 113 SLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVD 192 (851)
Q Consensus 113 ~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~ 192 (851)
.+.-.|+++.|..++..+- ....+.+++.+.+.|..++|+++- +|..- -.....+.|+++
T Consensus 595 t~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s----------~D~d~---rFelal~lgrl~ 654 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS----------TDPDQ---RFELALKLGRLD 654 (794)
T ss_pred HHhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC----------CChhh---hhhhhhhcCcHH
Confidence 4455566666655443321 234456666666777777776553 22211 122345667777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 193 EGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDEL 272 (851)
Q Consensus 193 ~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~ 272 (851)
.|.++..+.. +..-|..|.++....+++..|.++|.++.. |..|+-++...|+.+....+-...
T Consensus 655 iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~ 718 (794)
T KOG0276|consen 655 IAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLA 718 (794)
T ss_pred HHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHH
Confidence 7777665542 455678888888888888888887776543 445666666667666555554444
Q ss_pred HhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 273 KQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKS 306 (851)
Q Consensus 273 ~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 306 (851)
.+.|.. +....+|...|+++++++++.+
T Consensus 719 ~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 719 KKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred Hhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 444322 2233445666777666666544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.37 E-value=1.5 Score=45.51 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCCHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS-----RQLGADSLVY 249 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~~~ 249 (851)
..++..++..+..+|+++.+++.+++++..++. +...|..|+.+|.+.|+...|+..|+.+.+ .|+.|-..+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~--~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY--DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 345777888888888899999999988888877 888888999999999998888888887765 4666666555
Q ss_pred HHHHHH
Q 038852 250 NNLISG 255 (851)
Q Consensus 250 ~~Li~~ 255 (851)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 444443
|
|
| >KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.25 E-value=5.3 Score=47.24 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=18.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 251 NLISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 251 ~Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
.++..+.++|+.+.|.+++++...
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~ 353 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKD 353 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhh
Confidence 466777888888888888877654
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.05 E-value=1.3 Score=42.99 Aligned_cols=92 Identities=20% Similarity=0.267 Sum_probs=38.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcC
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLGAD--SLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQG 295 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g 295 (851)
...+...+++++|+..++..+..-.+-+ ..+--.|.+.....|.+|+|+.+++.....+. .......-.+++...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 3444445555555555544443211000 01112233444445555555555544443322 1222333344455555
Q ss_pred CHHHHHHHHHHHHHhc
Q 038852 296 KDKEAMQSYKSLMERN 311 (851)
Q Consensus 296 ~~~~A~~l~~~~~~~~ 311 (851)
+-++|+.-|+..+..+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 5555555555555443
|
|
| >KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.04 E-value=10 Score=40.63 Aligned_cols=15 Identities=13% Similarity=-0.121 Sum_probs=10.3
Q ss_pred CHHHHHHHHHhhhhc
Q 038852 550 RGEEIERVLNADRWG 564 (851)
Q Consensus 550 ~~~eA~~ll~~~~~~ 564 (851)
++-+|+++|+++...
T Consensus 353 ~l~~Al~lY~kLm~~ 367 (462)
T KOG2199|consen 353 KLLDALRLYNKLMNE 367 (462)
T ss_pred HHHHHHHHHHHHHhh
Confidence 456778888886543
|
|
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.95 E-value=8.6 Score=39.51 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=61.2
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHH
Q 038852 199 RRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS----RQLGADSLVY-NNLISGFLNLGNLEKANELFDELK 273 (851)
Q Consensus 199 ~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~----~g~~pd~~~~-~~Li~~~~~~g~~~~A~~~~~~~~ 273 (851)
++..+.++..--..+|..++..|+..++.+.+.+++++..+ .|.+.|+... ..|+-.|....-+++-++..+.|.
T Consensus 103 ~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~i 182 (412)
T COG5187 103 REKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDII 182 (412)
T ss_pred HHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 33333343433456788888888888888888777665544 4555444322 123333433444566677777777
Q ss_pred hcCCccchhh-HHHH-HHHHHHcCCHHHHHHHHHHHHH
Q 038852 274 QRCLVYDGVV-NATF-MEWWFNQGKDKEAMQSYKSLME 309 (851)
Q Consensus 274 ~~~~~~d~~~-~~~l-i~~~~~~g~~~~A~~l~~~~~~ 309 (851)
++|...+..- |... ...+....++.+|-.+|.+++.
T Consensus 183 EkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 183 EKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 7766533221 1111 1123344567777777766654
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.58 E-value=13 Score=40.24 Aligned_cols=126 Identities=14% Similarity=0.117 Sum_probs=62.0
Q ss_pred hcCCHHHHHHHHHHHHhcCCccchh--------hHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCCHHHHHHHHH
Q 038852 258 NLGNLEKANELFDELKQRCLVYDGV--------VNATFMEWWFNQGKDKEAMQSYKSLMER-----NFRMTPATCNTLLE 324 (851)
Q Consensus 258 ~~g~~~~A~~~~~~~~~~~~~~d~~--------~~~~li~~~~~~g~~~~A~~l~~~~~~~-----~~~~~~~~~~~Li~ 324 (851)
..+++++|.++-+..+..-...+.. +|..+...|...|+.......+...+.. +..--....|.|++
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 3466666666665544321111222 2333333444455555544444443321 11122345666677
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCCCccCH--HHHHHHHHHHHHcCChHHHHHHHHHhccCCC
Q 038852 325 VLLKHEKKEEAQALFEQMLDNHQPPNIQAVNS--DTFNIMVNECFKHGKFSEAIETFKKAGTHPK 387 (851)
Q Consensus 325 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~--~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~ 387 (851)
.|...+.++.|.++..+.. .|+...-+. ..+..++....-.+++..|.++|-.+..+.+
T Consensus 218 ~yL~n~lydqa~~lvsK~~----~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSV----YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHhhhHHHHHHHHHhhccc----CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 7777777777776655443 232111111 1223445555566677777777777665543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.57 E-value=2.2 Score=40.27 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=8.4
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 038852 405 YCENEMLEEAEKLLREIS 422 (851)
Q Consensus 405 ~~~~g~~~~A~~l~~~m~ 422 (851)
+...|++++|+.+|+++.
T Consensus 54 ~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 334444444444444443
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.57 E-value=13 Score=40.27 Aligned_cols=167 Identities=12% Similarity=0.087 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCCCCCcc
Q 038852 282 VVNATFMEWWFNQGKDKEAMQSYKSLMERN--FRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNH-----QPPNIQAV 354 (851)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~-----~~p~~~~~ 354 (851)
..+..+...|..+|+++.|++.|-++.+-. .+.....|..+|..-...|+|.....+..++...- .... ...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~-v~~ 229 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQE-VPA 229 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHh-cCc
Confidence 344555666666777777777766644321 11122345556666666677776666666665431 0000 000
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCC--CCCcc-CHHHHHHHHHHHHhcCCHHHHHH-----HHHHHHhCCC
Q 038852 355 NSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKS--KPFAM-DVAGYNNIIARYCENEMLEEAEK-----LLREISTKSL 426 (851)
Q Consensus 355 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~-d~~~~~~li~~~~~~g~~~~A~~-----l~~~m~~~g~ 426 (851)
....+..|+.. ..++++.|.+.|-.+.....+ .-+.+ |+.+|. .+.+++--++-+--+. .|+.+.+
T Consensus 230 kl~C~agLa~L--~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~Fk~fle--- 303 (466)
T KOG0686|consen 230 KLKCAAGLANL--LLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNESFKLFLE--- 303 (466)
T ss_pred chHHHHHHHHH--HHHHHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchhhhhHHh---
Confidence 22333444443 445888888887766433222 11222 444443 2333332222222112 2222222
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 427 SPDVTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 427 ~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
.+...+..|...| .+++...+++++++..
T Consensus 304 -l~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 304 -LEPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred -cChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 2444555555554 4568888888877764
|
|
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.26 E-value=15 Score=40.13 Aligned_cols=47 Identities=13% Similarity=0.078 Sum_probs=27.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh
Q 038852 142 CNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKV 191 (851)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~ 191 (851)
-..+|.-|...|+++-|..-+.++ -... -..+....|+.+....++-
T Consensus 53 ~~sii~eyfstgdv~vaa~dl~el-g~se--yhpyfvkrlvsmamdrhdk 99 (645)
T KOG0403|consen 53 AVSIIDEYFSTGDVVVAASDLKEL-GSSE--YHPYFVKRLVSMAMDRHDK 99 (645)
T ss_pred HHHHHHHHccCCCchhhHHHHHHh-cccc--ccHHHHHHHHHHHhhccch
Confidence 357888899999998888777665 1111 1223334455555555443
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=93.22 E-value=27 Score=43.04 Aligned_cols=359 Identities=11% Similarity=0.050 Sum_probs=175.3
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHH---HHHHHHHcC---ChhHHHHHHHHHHHcCCCCCCHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRP---TVFTCNA---IIAAMYRAK---RYDDAVALFKYFFDQADIVPNIV 176 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~---~~~~~~~---li~~~~~~g---~~~~A~~l~~~~~~~~~~~pd~~ 176 (851)
+...+-.+++....++.|+..++++..+-+.. ....+.. ++.-....| .+++|+.-|+.+.... --..
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 553 (932)
T PRK13184 477 SCLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGV---GAPL 553 (932)
T ss_pred ecccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCC---CCch
Confidence 34445567888889999999999876543211 1122222 222222334 4778888888773221 1223
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
-|..-+-+|-+.|++++-++.+.-++++.+..|.......-+ ..++.+..... ...+|.-++-+.
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~----~~~~~~~~~~~~ 618 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHL-----------VYRLHESLYKH----RREALVFMLLAL 618 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHH-----------HHHHHHHHHHH----HHHHHHHHHHHH
Confidence 355555568889999999999999998887766543221111 11111111111 112222222222
Q ss_pred H---hcCCHHHHHHHHHHHHhcC-------Cccchh-h----HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHH
Q 038852 257 L---NLGNLEKANELFDELKQRC-------LVYDGV-V----NATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNT 321 (851)
Q Consensus 257 ~---~~g~~~~A~~~~~~~~~~~-------~~~d~~-~----~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~ 321 (851)
. +.-...+-+++|+.+..+- +.+... . +..++. .-.|..---.++|+++.+.. +..+...
T Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 693 (932)
T PRK13184 619 WIAPEKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLS--FWSGFTPFLPELFQRAWDLR---DYRALAD 693 (932)
T ss_pred HhCcccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHH--HHhcCchhhHHHHHHHhhcc---cHHHHHH
Confidence 1 1112233344554443321 111111 1 111111 12344444455666655542 2244445
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCC-------CccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccC
Q 038852 322 LLEVLLKHEKKEEAQALFEQMLDNHQPPNI-------QAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMD 394 (851)
Q Consensus 322 Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-------~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d 394 (851)
+..+.+..|.++-+.+..+.+.+.-..-+. ...+...|..-+.++....+++++.+.+..+... .-
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 766 (932)
T PRK13184 694 IFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPT-------LI 766 (932)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHH-------HH
Confidence 555667888887766665555431111000 0001222444455666666777777766554110 01
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHH
Q 038852 395 VAGYNNIIARYCENEMLEEAEKLLREISTKSLSPD--VTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVF 472 (851)
Q Consensus 395 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~ 472 (851)
...+..++.-....++.+....+.+.+...-.... .......+.+|.-..++++|-++++.....-...+......|.
T Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (932)
T PRK13184 767 LYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLY 846 (932)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHH
Confidence 22233333333334454544455444443321111 2234556777888889999999886655432222333222233
Q ss_pred HH-HHHcCCHHHHHHHHHHHhhC
Q 038852 473 NE-LITKGKVAECAPILTKMGEK 494 (851)
Q Consensus 473 ~~-~~~~g~~~~A~~ll~~m~~~ 494 (851)
.+ ++-.++.+.|..-|....+.
T Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~ 869 (932)
T PRK13184 847 GCYLALTEDREAAKAHFSGCRED 869 (932)
T ss_pred HHHHHhcCchhHHHHHHhhcccc
Confidence 33 34567777777777776644
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=93.21 E-value=27 Score=43.02 Aligned_cols=352 Identities=11% Similarity=0.065 Sum_probs=166.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHHcC---CHHHHHHHHHHHHhcCCCCCHHHH
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL-------TKGFVDAG---RIGEAVDLLRDMLSRQLGADSLVY 249 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L-------i~~~~~~g---~~~~A~~l~~~m~~~g~~pd~~~~ 249 (851)
++-+++.....++.|+..|+++...-|. -...|.++ +.-....| .+++|+.-|+.+... +. -.--|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~ 555 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPG--RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG-VG-APLEY 555 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCC--cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC-CC-CchHH
Confidence 4445677778888888888888765433 11222221 11122223 366666666665532 11 22335
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCc-cchhh-HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038852 250 NNLISGFLNLGNLEKANELFDELKQRCLV-YDGVV-NATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLL 327 (851)
Q Consensus 250 ~~Li~~~~~~g~~~~A~~~~~~~~~~~~~-~d~~~-~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~ 327 (851)
..-+-+|-+.|++++-++.|..+.++-.. |.... -..++ .++.+.+.... ..+|.-|+-++.
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~----~~~~~~~~~~~~ 619 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLV------------YRLHESLYKHR----REALVFMLLALW 619 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHH------------HHHHHHHHHHH----HHHHHHHHHHHH
Confidence 45555677777777777777766654221 11110 00000 01111111111 123333333222
Q ss_pred h---CCCHHHHHHHHHHHHHcCCCCCCC---ccCHHHH----HHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHH
Q 038852 328 K---HEKKEEAQALFEQMLDNHQPPNIQ---AVNSDTF----NIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAG 397 (851)
Q Consensus 328 ~---~g~~~~A~~l~~~m~~~~~~p~~~---~~~~~~~----~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~ 397 (851)
. .-...+-.++|+.+..+ ..+..+ ......+ ..+..+| -.|..---.++|+++.+.. |..+
T Consensus 620 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~ 690 (932)
T PRK13184 620 IAPEKISSREEEKFLEILYHK-QQATLFCQLDKTPLQFRSSKMELFLSF-WSGFTPFLPELFQRAWDLR-------DYRA 690 (932)
T ss_pred hCcccccchHHHHHHHHHHhh-ccCCceeeccCchhhhhhhhHHHHHHH-HhcCchhhHHHHHHHhhcc-------cHHH
Confidence 1 11223334455544432 221110 0011111 1111111 2344444556666665432 4555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccch
Q 038852 398 YNNIIARYCENEMLEEAEKLLREISTK----SLSPDV--------TTFRTLIDAYLKVERIDDALELFNRMVESGLRVVV 465 (851)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~--------~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 465 (851)
...+.-+.+..|.++-+....+.+.+. ...-+. ..|..-+.++....+++++.+.+..... ..-.
T Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 767 (932)
T PRK13184 691 LADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDP---TLIL 767 (932)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCH---HHHH
Confidence 566666667889988777766655532 111111 1122224455555566666654433211 1112
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHH
Q 038852 466 SFGTKVFNELITKGKVAECAPILTKMGEKDPKPD--FLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGV-GITPALQDFVR 542 (851)
Q Consensus 466 ~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd--~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~L~ 542 (851)
..+..++.-....++.+....+.+.+.+.-.... .......+.+|.-..++++|-++++..-.... ......+...+
T Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (932)
T PRK13184 768 YAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYG 847 (932)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHH
Confidence 2223233333344555555555555444322211 23445567888889999999999976643222 22233333344
Q ss_pred HHHHhcCCHHHHHHHHHhhhh
Q 038852 543 ETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 543 ~~~~~~G~~~eA~~ll~~~~~ 563 (851)
--++-.++-+-|...|...++
T Consensus 848 ~~~~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 848 CYLALTEDREAAKAHFSGCRE 868 (932)
T ss_pred HHHHhcCchhHHHHHHhhccc
Confidence 445667888888888888763
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.12 Score=34.84 Aligned_cols=32 Identities=25% Similarity=0.601 Sum_probs=17.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038852 198 FRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAV 231 (851)
Q Consensus 198 ~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~ 231 (851)
|+++++.+|. |..+|+.|+.+|...|++++|+
T Consensus 2 y~kAie~~P~--n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN--NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC--CHHHHHHHHHHHHHCcCHHhhc
Confidence 4445555544 5555555555555555555554
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.08 E-value=7.4 Score=40.13 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038852 227 IGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDE 271 (851)
Q Consensus 227 ~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~ 271 (851)
..+|+++|.-++...- ..++-..++.++....|..+|...|..
T Consensus 149 s~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 149 SRKALELFAYLVEHKG--KEVTSWEAIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hhHHHHHHHHHHHhcC--CcccHhHHHHHHccccchhhHHHHHHH
Confidence 3577788877776532 223344566777777777776665543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=93.00 E-value=1.2 Score=42.69 Aligned_cols=76 Identities=13% Similarity=0.308 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG----R-------IGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g----~-------~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
+++|+.-|++++..+|. ...++..++.+|...+ + +++|.+.|+++... +|+..+|..-+.++.
T Consensus 51 iedAisK~eeAL~I~P~--~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~-- 124 (186)
T PF06552_consen 51 IEDAISKFEEALKINPN--KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA-- 124 (186)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH--
Confidence 45566667777776655 4556666666666533 2 45556666666654 567777777666653
Q ss_pred CCHHHHHHHHHHHHhcC
Q 038852 260 GNLEKANELFDELKQRC 276 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~ 276 (851)
+|-+++.++.+.+
T Consensus 125 ----kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 ----KAPELHMEIHKQG 137 (186)
T ss_dssp ----THHHHHHHHHHSS
T ss_pred ----hhHHHHHHHHHHH
Confidence 4566666665543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.91 E-value=8.7 Score=39.65 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=25.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 436 LIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKM 491 (851)
Q Consensus 436 Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m 491 (851)
....|..+|.+.+|..+.++++..+. .+...+..++..|...||--.|.+-++++
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 33445555555555555555554432 22233333444555555544444444443
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=92.89 E-value=17 Score=39.79 Aligned_cols=195 Identities=11% Similarity=0.051 Sum_probs=95.2
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCCh
Q 038852 294 QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVL-LKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKF 372 (851)
Q Consensus 294 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~-~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~ 372 (851)
.|+.+++.+.+..+...........+..|+.+- ....+..+|+++|+.+.-. .|.- -+.......-+......|+.
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGT-LvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGT-LVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCch-HHHHHHHHHhhHHHHhcCcH
Confidence 455555555555544444444444455555443 3345677777777776542 2210 00223444455566677887
Q ss_pred HHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHH
Q 038852 373 SEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPD--VTTFRTLIDAYLKVERIDDAL 450 (851)
Q Consensus 373 ~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~Ll~~~~~~g~~~~A~ 450 (851)
++++.+-...........+.-+. +..+..++.+.++-..- ..+.+++.. +.++ ..+|..+...-...|+.+.|.
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F--~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~ 277 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQF--AQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELAR 277 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHH--HHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHH
Confidence 77766555444333332221111 22233333333321111 113333322 2222 457777888888888888888
Q ss_pred HHHHHHHHcCCccchhHHHHHHHHH-----HHcCCHHHHHHHHHHHhhCCCC
Q 038852 451 ELFNRMVESGLRVVVSFGTKVFNEL-----ITKGKVAECAPILTKMGEKDPK 497 (851)
Q Consensus 451 ~~~~~m~~~~~~~~~~~~~~L~~~~-----~~~g~~~~A~~ll~~m~~~~~~ 497 (851)
..-+++.......+.. ...+..| +-..+++++++.+..+-...+.
T Consensus 278 ~As~~A~~L~~~~~~~--~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~ 327 (421)
T PRK12798 278 FASERALKLADPDSAD--AARARLYRGAALVASDDAESALEELSQIDRDKLS 327 (421)
T ss_pred HHHHHHHHhccCCCcc--hHHHHHHHHHHccCcccHHHHHHHHhcCChhhCC
Confidence 8888777653221111 1111222 2244566666666665544333
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.70 E-value=11 Score=39.63 Aligned_cols=102 Identities=16% Similarity=0.220 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCH----
Q 038852 356 SDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIA-RYCENEMLEEAEKLLREISTKSLSPDV---- 430 (851)
Q Consensus 356 ~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~pd~---- 430 (851)
..++...+..||+.||.+.|++.+++..+..-..+.+.|+..+..-+. .|....-+.+-++..+.+.+.|-.-+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 457788888999999999999999887776666677777766543332 233333345555555566666654332
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 038852 431 TTFRTLIDAYLKVERIDDALELFNRMVES 459 (851)
Q Consensus 431 ~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 459 (851)
.+|..| .|....++.+|-.+|-+.+..
T Consensus 184 KvY~Gl--y~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 184 KVYQGL--YCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHH--HHHHHHhHHHHHHHHHHHccc
Confidence 344433 344567888888888877653
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=92.55 E-value=6 Score=41.08 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCccchhhHHHHHHHHHHcCCHHHHHHHHH
Q 038852 245 DSLVYNNLISGFLNLGNLEKANELFDELKQR-CLVYDGVVNATFMEWWFNQGKDKEAMQSYK 305 (851)
Q Consensus 245 d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~-~~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 305 (851)
+..+...++..+++.+++.+-.++++..... +..-|...|..+++...+.||..-..++.+
T Consensus 201 ~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 201 TRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred ChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 4444445555555555555555555544433 333455555555555555555555444444
|
|
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.24 E-value=15 Score=37.74 Aligned_cols=103 Identities=15% Similarity=0.216 Sum_probs=67.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhcCC
Q 038852 169 ADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETA---PVGPSSNTYRHL---TKGFVDAGRIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 169 ~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~---~~~p~~~~~~~L---i~~~~~~g~~~~A~~l~~~m~~~g~ 242 (851)
+|...-..+|..++..|+..+|.+.+.+.+++..+.. +.+.| ++... +-.|....-.++-++..+.|+++|.
T Consensus 109 ngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiD--v~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 109 NGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKID--VFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchh--hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 3333446789999999999999999999888876643 23233 33333 3344444557888899999999886
Q ss_pred CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 243 GADS----LVYNNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 243 ~pd~----~~~~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
.-+. .+|.. -.+....++.+|-.+|.+.+..
T Consensus 187 DWeRrNRyK~Y~G--i~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 187 DWERRNRYKVYKG--IFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred CHHhhhhHHHHHH--HHHHHHHhhHHHHHHHHHHhcc
Confidence 5332 23322 2334456788888888777654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.17 E-value=4.1 Score=37.81 Aligned_cols=51 Identities=14% Similarity=0.246 Sum_probs=25.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 152 AKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 152 ~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
.++.+++..+++.+.-..+-.+...++...+ ++..|++++|+.+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 5556666666655533222222333333332 45556666666666665543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.16 E-value=20 Score=38.73 Aligned_cols=90 Identities=14% Similarity=0.236 Sum_probs=57.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038852 360 NIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNI------------IARYCENEMLEEAEKLLREISTKSLS 427 (851)
Q Consensus 360 ~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~ 427 (851)
..|...+...|++++|..++.++ -+.||..+ ++.|...+|+-.|--+-+++..+-+.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el-----------~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~ 203 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCEL-----------QVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFE 203 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhc-----------chhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcC
Confidence 45666777788888888877766 23333322 45566677777777666666544332
Q ss_pred -CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 428 -PD-----VTTFRTLIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 428 -pd-----~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
+| ...|+.++......+.+-.+.+.|+.+.+.+
T Consensus 204 ~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~ 242 (439)
T KOG1498|consen 204 KPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTG 242 (439)
T ss_pred CccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhccc
Confidence 23 2346667777777777777777777776643
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.10 E-value=18 Score=38.21 Aligned_cols=162 Identities=10% Similarity=0.004 Sum_probs=72.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH----hcCCccc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CCCCHHHHHH
Q 038852 251 NLISGFLNLGNLEKANELFDELK----QRCLVYD-GVVNATFMEWWFNQGKDKEAMQSYKSLMERN----FRMTPATCNT 321 (851)
Q Consensus 251 ~Li~~~~~~g~~~~A~~~~~~~~----~~~~~~d-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~----~~~~~~~~~~ 321 (851)
.|+..|...+++.+|+.+...+. +.+-+.. +.++..=-.+|....+..+|...+..+.... +.|-...-.-
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 46777778888877776654433 2222111 1122222345666666666666665544321 1111000001
Q ss_pred HHH--HHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHH---HHHHHHHHHHHcCChHHHHHHHHH--hccCCCCCCCccC
Q 038852 322 LLE--VLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSD---TFNIMVNECFKHGKFSEAIETFKK--AGTHPKSKPFAMD 394 (851)
Q Consensus 322 Li~--~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~---~~~~L~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~d 394 (851)
|.. .++...++.-|..+|-++.+.-..-+. +.. ....|+.+-...+..++.-.++.. .....+ ++
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~---~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g-----~~ 284 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDD---DVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAG-----RD 284 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCC---cHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccC-----cc
Confidence 111 123336777777777777653211111 112 222233333345555555444432 111111 25
Q ss_pred HHHHHHHHHHHHh--cCCHHHHHHHHHH
Q 038852 395 VAGYNNIIARYCE--NEMLEEAEKLLRE 420 (851)
Q Consensus 395 ~~~~~~li~~~~~--~g~~~~A~~l~~~ 420 (851)
.....++..++.+ ..+|+.|+.-|+.
T Consensus 285 i~AmkavAeA~~nRSLkdF~~AL~~yk~ 312 (411)
T KOG1463|consen 285 IDAMKAVAEAFGNRSLKDFEKALADYKK 312 (411)
T ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhHH
Confidence 5556666666544 2345555555443
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.10 E-value=8.7 Score=41.41 Aligned_cols=130 Identities=12% Similarity=0.077 Sum_probs=80.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--------HHHHHHHHcCChhHHHHHHHHHHHcCCCCCC----HHHHHH
Q 038852 113 SLIRAGDLDAASYLARQAVFSRIRPTVFTCN--------AIIAAMYRAKRYDDAVALFKYFFDQADIVPN----IVSYNN 180 (851)
Q Consensus 113 ~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~--------~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd----~~~~~~ 180 (851)
.+....++.+|..+-+..+..-..-|..+++ .+-.+|-..|+...-..+|...++...+.-| .+..|.
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~ 214 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINL 214 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHH
Confidence 3444578888888877765443223333332 2333344567877777777776665444433 456788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSS--NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~--~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~ 242 (851)
|++.|...+.++.|.++..+..--....-+. ..+..+++..+-.+++..|.+.|-.++....
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 8899999999999998887663111010011 1223345555667899999999999887644
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.01 E-value=2 Score=44.69 Aligned_cols=61 Identities=20% Similarity=0.370 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
++..++..+...|+++.+.+.+++++..... |...|..++.+|.+.|+...|+..|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 5666777777777777777777777777555 677777777777777777777777776654
|
|
| >KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.99 E-value=19 Score=38.34 Aligned_cols=89 Identities=12% Similarity=0.165 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---CHHHH
Q 038852 173 PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA---DSLVY 249 (851)
Q Consensus 173 pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~~~ 249 (851)
|+..+...++.-|....+.+...-+-+.+. ...+.+..++.+.+.....+++..+++..-..- =....
T Consensus 73 ~~~~~li~~~~~FV~~~n~eqlr~as~~f~---------~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H 143 (422)
T KOG2582|consen 73 PDPETLIELLNDFVDENNGEQLRLASEIFF---------PLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIH 143 (422)
T ss_pred CCHHHHHHHHHHHHHhcChHHHhhHHHHHH---------HHHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhH
Confidence 455555555555555554332222111111 134555666666666555555554444321110 11334
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 038852 250 NNLISGFLNLGNLEKANELFD 270 (851)
Q Consensus 250 ~~Li~~~~~~g~~~~A~~~~~ 270 (851)
..++..|.+.+++..++..++
T Consensus 144 ~~l~~~~L~ak~y~~~~p~ld 164 (422)
T KOG2582|consen 144 ADLLQLCLEAKDYASVLPYLD 164 (422)
T ss_pred HHHHHHHHHhhcccccCCccc
Confidence 456666667777666655544
|
|
| >KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.91 E-value=25 Score=39.49 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHh
Q 038852 315 TPATCNTLLEVLLK 328 (851)
Q Consensus 315 ~~~~~~~Li~~~~~ 328 (851)
|..-++.++...+.
T Consensus 102 ~~~~~~~~l~~~~~ 115 (757)
T KOG4368|consen 102 DMNEFDNLLQPIID 115 (757)
T ss_pred CHHHHHHHHHHHHH
Confidence 44455555555443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.76 E-value=1.8 Score=43.22 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=72.9
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 038852 149 MYRAKRYDDAVALFKYFFDQADIVPNI-VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRI 227 (851)
Q Consensus 149 ~~~~g~~~~A~~l~~~~~~~~~~~pd~-~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~ 227 (851)
|....+|++|+..|.+++.. .|++ ..|..-+.++.+..+++.+..--.++++..+. .+.....|..++.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~~---nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N--~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI---NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN--LVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHhc---CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH--HHHHHHHHHHHHHhhccc
Confidence 44566788888888777664 3444 45667777788888888888877777776544 444555666677777788
Q ss_pred HHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 228 GEAVDLLRDMLSRQ----LGADSLVYNNLISGFLNLGNLEKANELFD 270 (851)
Q Consensus 228 ~~A~~l~~~m~~~g----~~pd~~~~~~Li~~~~~~g~~~~A~~~~~ 270 (851)
++|+..+.++...+ +.+-...+..|..+-.+.=...+..++..
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 88888887774432 23333445555444444334444444433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.70 E-value=9.8 Score=36.41 Aligned_cols=100 Identities=18% Similarity=0.290 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH-cCChHHHHHHHH
Q 038852 302 QSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK-HGKFSEAIETFK 380 (851)
Q Consensus 302 ~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~-~g~~~~A~~~~~ 380 (851)
++++.+.+.++.++...+..++..+.+.|++.....+ +..++-+| +..+-..|+..-.. ..-..-|++++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~D----Sk~lA~~LLs~~~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPD----SKPLACQLLSLGNQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCC----cHHHHHHHHHhHccChHHHHHHHHHHH
Confidence 4455555666777777777777777777776544333 33334442 22222222111100 001333444444
Q ss_pred HhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 381 KAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREI 421 (851)
Q Consensus 381 ~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 421 (851)
++.. .+..+++.+...|++-+|+++.+..
T Consensus 87 RL~~------------~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 87 RLGT------------AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred Hhhh------------hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 4421 1455666666777777777776654
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.68 E-value=9 Score=38.51 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 178 ~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
+.....++...|++-++++...++++..+. |+.+|..-+++.+..=+.++|.+-|..+++.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~--nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPG--NVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 444555666677888888888888777655 7777777777777777777888777777776
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=91.60 E-value=17 Score=37.76 Aligned_cols=140 Identities=12% Similarity=0.084 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHh-cCCccchhhHHHHHHHHHHcCCHHHH
Q 038852 225 GRIGEAVDLLRDMLS-RQLGADSLVYNNLISGFLN-LG-NLEKANELFDELKQ-RCLVYDGVVNATFMEWWFNQGKDKEA 300 (851)
Q Consensus 225 g~~~~A~~l~~~m~~-~g~~pd~~~~~~Li~~~~~-~g-~~~~A~~~~~~~~~-~~~~~d~~~~~~li~~~~~~g~~~~A 300 (851)
..+.+|+.+|+..-. ..+--|..+...|++.... .+ ....-.++.+.+.. .+...+..+...+++.+++.+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345667777762211 1233366666666666655 22 22222333333332 23556778888889999999999999
Q ss_pred HHHHHHHHHh-cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-----HcCCCCCCCccCHHHHHHHHHHHHHc
Q 038852 301 MQSYKSLMER-NFRMTPATCNTLLEVLLKHEKKEEAQALFEQML-----DNHQPPNIQAVNSDTFNIMVNECFKH 369 (851)
Q Consensus 301 ~~l~~~~~~~-~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~-----~~~~~p~~~~~~~~~~~~L~~~~~~~ 369 (851)
.++++..... +...|...|..+|+.....|+..-..++.++-. +.++.- +...-..|-..+.+.
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v-----~~~L~~~L~~LF~~v 291 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDV-----TDELRSQLSELFKKV 291 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcC-----CHHHHHHHHHHHHhc
Confidence 9998887765 666777889999999999999877766665421 223332 666666666655443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.59 E-value=10 Score=36.33 Aligned_cols=133 Identities=12% Similarity=0.168 Sum_probs=71.7
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 038852 126 LARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETA 205 (851)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~ 205 (851)
.++.+...++.++...+..++..+.+.|++..-..++.- ++-+|....-..+- ...+.+..+..+--.|+++-
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LL--s~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLL--SLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHH--HhHccChHHHHHHHHHHHHh
Confidence 344445566777777888888888888877665555442 23334332222221 11223344444444444432
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 206 PVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 206 ~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
+. .+..+++++...|++-+|+++.+..... +......++.+..+.+|...-..+|+-..+
T Consensus 89 ~~-----~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 GT-----AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hh-----hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 4566677777888888888777665332 222233455555555655544444444443
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.46 E-value=9 Score=42.96 Aligned_cols=63 Identities=11% Similarity=0.140 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHcCCHHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038852 283 VNATFMEWWFNQGKDKEAM-QSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 283 ~~~~li~~~~~~g~~~~A~-~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 345 (851)
+.+.++......+.-++.. ++++.+.+.++.....-|..+++++...++.+.|..+++++.+.
T Consensus 174 i~~ylL~Lait~v~~~~fr~~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~e 237 (926)
T COG5116 174 IINYLLDLAITLVEEEGFRKEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVKE 237 (926)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHhh
Confidence 4444444444443333322 33333444433221122444667777777888888888877664
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.27 E-value=2.4 Score=42.38 Aligned_cols=120 Identities=14% Similarity=0.143 Sum_probs=60.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcC
Q 038852 291 WFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHG 370 (851)
Q Consensus 291 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g 370 (851)
|....+++.|+..|.+.+..++.. ...|..-+.++.+..+++.+..-..++++ +.|+ .......++..+....
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~-~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N----~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTV-ASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPN----LVKAHYFLGQWLLQSK 92 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCc-chhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChH----HHHHHHHHHHHHHhhc
Confidence 344455555666555555544321 13344455556666666666665555555 3332 2344455555666666
Q ss_pred ChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHH
Q 038852 371 KFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKL 417 (851)
Q Consensus 371 ~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l 417 (851)
.+++|+..+.++........+.+...++..|..+-...-...+..++
T Consensus 93 ~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri 139 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRI 139 (284)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHH
Confidence 66666666666644434444444444455554443333333333333
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.45 Score=32.53 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=12.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 038852 178 YNNLINTYCDEGKVDEGMNVFRRI 201 (851)
Q Consensus 178 ~~~Li~~~~~~g~~~~A~~l~~~~ 201 (851)
|+.|+.+|.+.|++++|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555555555555555555553
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.18 E-value=1.9 Score=41.28 Aligned_cols=67 Identities=9% Similarity=0.139 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA----------GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG 260 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~----------g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g 260 (851)
++.|++.++.....+|. |...++.-+.++... ..+++|+.-|++++..++. ...++..++.+|...+
T Consensus 7 FE~ark~aea~y~~nP~--DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL--DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN-KHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH--hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHH
Confidence 45666666666666655 555555444444332 2345666666677766554 4567777777776543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.26 Score=33.27 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=23.5
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038852 234 LRDMLSRQLGADSLVYNNLISGFLNLGNLEKAN 266 (851)
Q Consensus 234 ~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~ 266 (851)
|+++++..+. |..+|+.|+.+|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 5566666655 7777888888888888887775
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=91.03 E-value=5.1 Score=41.42 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCC-ccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 357 DTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPF-AMDVAGYNNIIARYCENEMLEEAEKLLREI 421 (851)
Q Consensus 357 ~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 421 (851)
.....|+..|.+.|++++|+++|+.+.......+. .+...+...+..++.+.|+.++.+.+.-++
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556777788888888888888776433322221 112223333444444555555544444333
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.63 Score=31.07 Aligned_cols=29 Identities=31% Similarity=0.587 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETA 205 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~ 205 (851)
+|..++.+|...|++++|++.|+++++.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 45555555555555555555555555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.92 E-value=36 Score=39.31 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYF 165 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~ 165 (851)
....++..+.+.+--.+|+.++-++
T Consensus 180 l~~~iV~f~mkHNAE~eAiDlL~Ev 204 (878)
T KOG2005|consen 180 LVQEIVPFHMKHNAEFEAIDLLMEV 204 (878)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHh
Confidence 3444555556666666777777665
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=90.79 E-value=6.9 Score=42.90 Aligned_cols=58 Identities=7% Similarity=-0.183 Sum_probs=37.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHH-HcCCHHHHHHHHHHHhh
Q 038852 436 LIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELI-TKGKVAECAPILTKMGE 493 (851)
Q Consensus 436 Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~-~~g~~~~A~~ll~~m~~ 493 (851)
.+..+.+.|.+..|+++.+-+...++..|......+++.|+ +.++++--+++++....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34556677888888888888877776644444344555443 56667777777776554
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.65 E-value=9.1 Score=35.58 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=27.4
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 187 DEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
..++.+++..+++.+.-..|..+...++... .++..|++++|+.+|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 3455666666666655555444443333322 345556666666666655554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.59 E-value=1.8 Score=44.20 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038852 231 VDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMER 310 (851)
Q Consensus 231 ~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 310 (851)
...++.|.+.|+.-|..+|+.|++.+-+..-.-. .+|.+. ..-|- ..-+-++++++.|...
T Consensus 92 y~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~~---------------F~HYP--~QQ~C~I~vLeqME~h 152 (406)
T KOG3941|consen 92 YTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQKV---------------FLHYP--QQQNCAIKVLEQMEWH 152 (406)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHHH---------------HhhCc--hhhhHHHHHHHHHHHc
Confidence 3345566667777677777777666544321110 011111 00011 1123355666666666
Q ss_pred cCCCCHHHHHHHHHHHHhCCC
Q 038852 311 NFRMTPATCNTLLEVLLKHEK 331 (851)
Q Consensus 311 ~~~~~~~~~~~Li~~~~~~g~ 331 (851)
|+-||..+-..|+.++.+.+.
T Consensus 153 GVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 153 GVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred CCCCchHHHHHHHHHhccccc
Confidence 666666666666666655543
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=90.53 E-value=24 Score=36.73 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH
Q 038852 210 SSNTYRHLTKGFVDAGRIGEAVDLL 234 (851)
Q Consensus 210 ~~~~~~~Li~~~~~~g~~~~A~~l~ 234 (851)
|......++..|.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4556666777777777777776655
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription] | Back alignment and domain information |
|---|
Probab=90.41 E-value=1.2 Score=49.35 Aligned_cols=9 Identities=44% Similarity=0.575 Sum_probs=3.6
Q ss_pred cccCCCCCC
Q 038852 788 QWTGQPPSA 796 (851)
Q Consensus 788 ~~~~~~~~~ 796 (851)
...++++-+
T Consensus 303 p~~~q~~~a 311 (742)
T KOG4274|consen 303 PQPQQPPVA 311 (742)
T ss_pred CcccCCccc
Confidence 334444433
|
|
| >KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.40 E-value=39 Score=38.97 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=37.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhc
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADS-LVYNNLISGFLNL 259 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~Li~~~~~~ 259 (851)
++..+.+.+--.+|++++-++...+ ++.-|+...++.+..-++..+...-+.||. ....+....|.+.
T Consensus 184 iV~f~mkHNAE~eAiDlL~Eve~id-----------~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf 252 (878)
T KOG2005|consen 184 IVPFHMKHNAEFEAIDLLMEVEGID-----------LLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKF 252 (878)
T ss_pred HHHHHHhccchhHHHHHHHHhhhHh-----------HHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHH
Confidence 3444455555566777776653321 233455555666666666666555444442 2333333444444
Q ss_pred CCHHHHH
Q 038852 260 GNLEKAN 266 (851)
Q Consensus 260 g~~~~A~ 266 (851)
+++.+|+
T Consensus 253 ~~~~~al 259 (878)
T KOG2005|consen 253 NEYPRAL 259 (878)
T ss_pred HHhHHHH
Confidence 4444443
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=90.33 E-value=22 Score=39.21 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 317 ATCNTLLEVLLKHEKKEEAQALFEQMLD--NHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 317 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~--~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
.+...|++.++-.||+..|+++++.+.- .++-..+......++..++-+|.-.+++.+|++.|..+
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888888888776532 11111122235567788888888888888888888776
|
|
| >PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB) | Back alignment and domain information |
|---|
Probab=90.33 E-value=32 Score=37.86 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 038852 263 EKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN 311 (851)
Q Consensus 263 ~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~ 311 (851)
-+|.-+++..+.+... +..+...++..|...|-...|.+.|..+.-+.
T Consensus 200 ~~Ai~lLE~~l~~s~~-n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~ 247 (365)
T PF09797_consen 200 LQAIALLEHALKKSPH-NYQLKLLLVRLYSLLGAGSLALEHYESLDIKN 247 (365)
T ss_pred HHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHhcChHH
Confidence 3444444544444332 44445555555555555555555555544333
|
The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 []. |
| >PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB) | Back alignment and domain information |
|---|
Probab=90.32 E-value=32 Score=37.86 Aligned_cols=55 Identities=25% Similarity=0.227 Sum_probs=38.7
Q ss_pred HHHHHHhCCC---HHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 322 LLEVLLKHEK---KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 322 Li~~~~~~g~---~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
++..+...++ +-+|+.+++..+..... |...-..++..|...|-.+.|.++|..+
T Consensus 186 Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~------n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 186 LLDLYSKTKDSEYLLQAIALLEHALKKSPH------NYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 4444444444 44677777777765432 6777788888888889888888888877
|
The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.15 E-value=0.6 Score=31.88 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 038852 249 YNNLISGFLNLGNLEKANELFDE 271 (851)
Q Consensus 249 ~~~Li~~~~~~g~~~~A~~~~~~ 271 (851)
|..|+.+|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444555555555555555554
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.07 E-value=32 Score=37.39 Aligned_cols=165 Identities=14% Similarity=0.101 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc--cchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh---------cCCCC
Q 038852 247 LVYNNLISGFLNLGNLEKANELFDELKQRCLV--YDGVVNATFMEWWFNQGKDKEAMQSYKSLMER---------NFRMT 315 (851)
Q Consensus 247 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~---------~~~~~ 315 (851)
..+.-+.+.|...|+++.|++.|.++...+.. -....+..+|.+-.-.|+|.....+..++... .+..-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 45667788888888888888888886654322 12445556666666777777777666665543 11222
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCCCccCHHHHHHHHHHHHHcCChHHHHHH-----HHHhccCCCCC
Q 038852 316 PATCNTLLEVLLKHEKKEEAQALFEQMLDNHQP-PNIQAVNSDTFNIMVNECFKHGKFSEAIET-----FKKAGTHPKSK 389 (851)
Q Consensus 316 ~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~-p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~-----~~~~~~~~~~~ 389 (851)
...+..|...+ .++++.|.+.|-........ +.+......+....+.++.--++-+--+.+ |+...+
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle----- 303 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE----- 303 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh-----
Confidence 23444444443 44788888777665433222 122211222333333333333322222222 222221
Q ss_pred CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 390 PFAMDVAGYNNIIARYCENEMLEEAEKLLREIST 423 (851)
Q Consensus 390 ~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 423 (851)
.+...+..|...| .+++...+++++++..
T Consensus 304 ---l~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 304 ---LEPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred ---cChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 1444455555444 5688999999988764
|
|
| >PF14669 Asp_Glu_race_2: Putative aspartate racemase | Back alignment and domain information |
|---|
Probab=89.99 E-value=18 Score=35.08 Aligned_cols=21 Identities=29% Similarity=0.397 Sum_probs=10.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 038852 434 RTLIDAYLKVERIDDALELFN 454 (851)
Q Consensus 434 ~~Ll~~~~~~g~~~~A~~~~~ 454 (851)
|..+..|.+.|.+|.|+.+++
T Consensus 185 n~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 185 NIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHcCCchHHHHHHh
Confidence 444444555555555555444
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=89.83 E-value=6.9 Score=48.53 Aligned_cols=50 Identities=18% Similarity=0.426 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhc
Q 038852 225 GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG--NLEKANELFDELKQR 275 (851)
Q Consensus 225 g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g--~~~~A~~~~~~~~~~ 275 (851)
+++...-+.+.+.++.... ....+..++.+|++.+ ++++|+.+..++.+.
T Consensus 792 ~KVn~ICdair~~l~~~~~-~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 792 SKVNKICDAIRKALEKPKD-KDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred cHHHHHHHHHHHHhccccc-chhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3444444555444432122 3344566777888877 788888888777765
|
|
| >KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.74 E-value=29 Score=36.40 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=26.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC------CccchhhHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 252 LISGFLNLGNLEKANELFDELKQRC------LVYDGVVNATFMEWWFNQGKDKEAMQSYKS 306 (851)
Q Consensus 252 Li~~~~~~g~~~~A~~~~~~~~~~~------~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 306 (851)
|+..|-+.++|+.|-.++.-+...+ ...-..++..+.+.|.+.++..+|..+..+
T Consensus 109 LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inR 169 (399)
T KOG1497|consen 109 LASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINR 169 (399)
T ss_pred HHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4445555555555555554332221 111123444455556666665555555544
|
|
| >PRK14700 recombination factor protein RarA; Provisional | Back alignment and domain information |
|---|
Probab=89.72 E-value=29 Score=36.55 Aligned_cols=93 Identities=10% Similarity=0.029 Sum_probs=49.8
Q ss_pred HHHHHHH---cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038852 471 VFNELIT---KGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGL-----FDMSKDIVDQMMKYGVGITPALQDFVR 542 (851)
Q Consensus 471 L~~~~~~---~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~-----~~~A~~~~~~m~~~g~~~~~~~~~~L~ 542 (851)
++.++.+ ..|.|.|+-++-+|++.|..|....-..++.++...|. ...|...++.+...|++.-.-.....+
T Consensus 129 ~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La~av 208 (300)
T PRK14700 129 QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAA 208 (300)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 4455443 45666777777777777666665555555555555553 234455555555556543333333344
Q ss_pred HHHHhcCCHHHHHHHHHhhhh
Q 038852 543 ETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 543 ~~~~~~G~~~eA~~ll~~~~~ 563 (851)
-.++.+-+-..+...+++...
T Consensus 209 iyLA~aPKSNs~y~A~~~A~~ 229 (300)
T PRK14700 209 IYLAVAPKSNACYKALAQAQQ 229 (300)
T ss_pred HHHHcCCCchHHHHHHHHHHH
Confidence 445555554444444444443
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.64 E-value=11 Score=37.92 Aligned_cols=64 Identities=9% Similarity=0.067 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCL 277 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~ 277 (851)
.+.....++...|++-++++.-.++++.... ++.+|..-+.+.+..=+.++|.+-|.++++.+.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 3444556666777777888877777777554 677777777777777777777777777776643
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.60 E-value=41 Score=37.99 Aligned_cols=289 Identities=12% Similarity=0.025 Sum_probs=135.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-cCCcc-----chhhHHHHHHHHHHcCCHHH--HHHHHHHHHHhcCCCCHHHHHHHH
Q 038852 252 LISGFLNLGNLEKANELFDELKQ-RCLVY-----DGVVNATFMEWWFNQGKDKE--AMQSYKSLMERNFRMTPATCNTLL 323 (851)
Q Consensus 252 Li~~~~~~g~~~~A~~~~~~~~~-~~~~~-----d~~~~~~li~~~~~~g~~~~--A~~l~~~~~~~~~~~~~~~~~~Li 323 (851)
++......|+-+++...+-+... .++.. -...|..++..+...+..+. ..+.+....+.-+ ++....-.-.
T Consensus 196 ~l~vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p-~ga~wll~~a 274 (546)
T KOG3783|consen 196 LLSVVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRYP-KGALWLLMEA 274 (546)
T ss_pred HHHHHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhCC-CCccHHHHHH
Confidence 34445556666666655544432 21110 01122333444444443333 3333333333322 2222222334
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHH
Q 038852 324 EVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIA 403 (851)
Q Consensus 324 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~ 403 (851)
..+...|+.+.|+.+++.+++ +...-+....+..++..+....++..|...++.+.+...- .-..|..+..
T Consensus 275 r~l~~~g~~eaa~~~~~~~v~----~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdW-----S~a~Y~Yfa~ 345 (546)
T KOG3783|consen 275 RILSIKGNSEAAIDMESLSIP----IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDW-----SHAFYTYFAG 345 (546)
T ss_pred HHHHHcccHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh-----hHHHHHHHHH
Confidence 555666777778887776654 1111112334556666677777888888888877654321 3333443432
Q ss_pred HHH--------h-cCCHHHHHHHHHHHHh---C---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-cch-h
Q 038852 404 RYC--------E-NEMLEEAEKLLREIST---K---SLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLR-VVV-S 466 (851)
Q Consensus 404 ~~~--------~-~g~~~~A~~l~~~m~~---~---g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~~-~ 466 (851)
+|. . .|+.++|-.+++...+ . .++.+.. ...+|.++-++.. .+.. +.. .
T Consensus 346 cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f-------------~~RKverf~~~~~-~~~~~~la~P 411 (546)
T KOG3783|consen 346 CCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF-------------IVRKVERFVKRGP-LNASILLASP 411 (546)
T ss_pred HHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH-------------HHHHHHHHhcccc-ccccccccch
Confidence 221 1 1233333333222111 0 0110110 1222322222211 1111 111 0
Q ss_pred HHH--HHHHHHHHcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCC------CCH
Q 038852 467 FGT--KVFNELITKGKVAECAPILTKMGEKDP-KPDFLIYDVVVRGL--CNEGLFDMSKDIVDQMMKYGVG------ITP 535 (851)
Q Consensus 467 ~~~--~L~~~~~~~g~~~~A~~ll~~m~~~~~-~pd~~~~~~ll~a~--~~~g~~~~A~~~~~~m~~~g~~------~~~ 535 (851)
++. .+.++|...+ .++..++........+ ..|......++.++ .+.|+-+.|..+|...++.... .-+
T Consensus 412 ~~El~Y~Wngf~~~s-~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~P 490 (546)
T KOG3783|consen 412 YYELAYFWNGFSRMS-KNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVP 490 (546)
T ss_pred HHHHHHHHhhcccCC-hhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 111 1223333322 3333333333333223 55666666666654 4679999999999988753222 233
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHhhhhcC
Q 038852 536 ALQDFVRETFGKAGR-GEEIERVLNADRWGY 565 (851)
Q Consensus 536 ~~~~~L~~~~~~~G~-~~eA~~ll~~~~~~~ 565 (851)
..+..++-+|...|. +.++.+++.+.++-+
T Consensus 491 fA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 491 FALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 344447777777777 999999999988754
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.48 E-value=6.6 Score=40.25 Aligned_cols=117 Identities=14% Similarity=0.068 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHH
Q 038852 245 DSLVYNNLISGFLN-----LGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATC 319 (851)
Q Consensus 245 d~~~~~~Li~~~~~-----~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~ 319 (851)
|...|...+..+.. .+.++-....++.|.+.|+.-|..+|..|++.+-+..- .|. .++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-nvf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-NVF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-HHH
Confidence 44555555554432 34566666777888888888888888888776543221 111 112
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcC----ChHHHHHHHHHhccC
Q 038852 320 NTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHG----KFSEAIETFKKAGTH 385 (851)
Q Consensus 320 ~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g----~~~~A~~~~~~~~~~ 385 (851)
-.+..-| -..-+-+++++++|...|+.| |.++-..|+.++.+.+ ++...+-++-+....
T Consensus 129 Q~~F~HY--P~QQ~C~I~vLeqME~hGVmP-----dkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPkfkn~ 191 (406)
T KOG3941|consen 129 QKVFLHY--PQQQNCAIKVLEQMEWHGVMP-----DKEIEDILVNAFGRWNFPTKKVKRMLYWMPKFKNS 191 (406)
T ss_pred HHHHhhC--chhhhHHHHHHHHHHHcCCCC-----chHHHHHHHHHhccccccHHHHHHHHHhhhhhccC
Confidence 2111112 123456899999999999999 7788888888887754 777777777665444
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.39 E-value=13 Score=41.77 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=73.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH-HHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcC
Q 038852 404 RYCENEMLEEAEKLLREISTKSLSPDV-TTF---RTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKG 479 (851)
Q Consensus 404 ~~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~---~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g 479 (851)
++..-|+-+.|..++++|... -|. .-| .+++.+|+..|+......++.-.+..+ .+++.-...+..++....
T Consensus 507 aLi~ygrqe~add~I~ell~d---~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD~-nDDVrRAAViAlGfvc~~ 582 (926)
T COG5116 507 ALILYGRQEMADDYINELLYD---KDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDG-NDDVRRAAVIALGFVCCD 582 (926)
T ss_pred hHhhhhhHHHHHHHHHHHhcC---chHHhhhccHHHHHHHHhcCCcchhHhhhheeecccC-chHHHHHHHHheeeeEec
Confidence 344567788888888888753 122 222 356678888888887777776655543 334443344555666777
Q ss_pred CHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038852 480 KVAECAPILTKMGEK-DPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 480 ~~~~A~~ll~~m~~~-~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~ 528 (851)
+.+.....++-+.+. +......+-..|.-+|...|+ ..|..+++.+..
T Consensus 583 D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~-~~a~diL~~L~~ 631 (926)
T COG5116 583 DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD-KVATDILEALMY 631 (926)
T ss_pred CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc-HHHHHHHHHHhh
Confidence 777777777766654 122222233445555666665 567777777764
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.21 E-value=0.97 Score=30.14 Aligned_cols=30 Identities=27% Similarity=0.537 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 431 TTFRTLIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 431 ~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
.+|..++.+|...|++++|+..|+++++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 345666666666666666666666666543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.20 E-value=7.2 Score=45.05 Aligned_cols=126 Identities=13% Similarity=0.260 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCcc--C-HHHHHHHHHHHHhcC
Q 038852 333 EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAM--D-VAGYNNIIARYCENE 409 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--d-~~~~~~li~~~~~~g 409 (851)
++--.++.+|...--.|++ +..++...++..|....+++..+++.+.+...+....+.- + ...|...+..-.+-|
T Consensus 180 ~~l~~~L~~mR~RlDnp~V--L~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~G 257 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDV--LHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPG 257 (1226)
T ss_pred HHHHHHHHHHHhhcCCccc--cCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCc
Confidence 4455667777765444433 3677888899999999999999999988866542211110 1 112333333344578
Q ss_pred CHHHHHHHHHHHHhCC--CCCCHHH-----HHH--HHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 410 MLEEAEKLLREISTKS--LSPDVTT-----FRT--LIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 410 ~~~~A~~l~~~m~~~g--~~pd~~~-----~~~--Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
|-++|+++.-.|++.. +.||... |.- +...|...+..+.|+++|+++.+..
T Consensus 258 DRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeve 317 (1226)
T KOG4279|consen 258 DRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVE 317 (1226)
T ss_pred cHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccC
Confidence 8899998888776642 4555432 211 1223445567788999999998754
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.98 E-value=1.1 Score=29.63 Aligned_cols=29 Identities=21% Similarity=0.439 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETA 205 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~ 205 (851)
.|..++.+|...|++++|++.|+++++.+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 34455555555555555555555555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.68 E-value=72 Score=39.56 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=10.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHH
Q 038852 429 DVTTFRTLIDAYLKVERIDDA 449 (851)
Q Consensus 429 d~~~~~~Ll~~~~~~g~~~~A 449 (851)
|...+..++..+...|.++.+
T Consensus 636 d~~slE~vl~~lv~~~~Id~~ 656 (1251)
T KOG0414|consen 636 DLTSLEEVLCELVARGYIDAA 656 (1251)
T ss_pred chhhHHHHHHHHHhCCCccHH
Confidence 444455555555555555443
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=88.58 E-value=43 Score=36.83 Aligned_cols=236 Identities=11% Similarity=0.038 Sum_probs=133.8
Q ss_pred CCccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 038852 103 PRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPT--VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNN 180 (851)
Q Consensus 103 ~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~ 180 (851)
+..+....+.-++.-|+......++.. +..++ ......++ -+-.|+-++|.+.|..+.. ....+....|..
T Consensus 80 dprNv~Aa~iy~lSGGnP~vlr~L~~~----d~~~~~d~~L~~g~l--aY~~Gr~~~a~~~La~i~~-~~l~~~lg~~la 152 (421)
T PRK12798 80 DPRNVDAALIYLLSGGNPATLRKLLAR----DKLGNFDQRLADGAL--AYLSGRGREARKLLAGVAP-EYLPAELGAYLA 152 (421)
T ss_pred CccchhHHHhhHhcCCCHHHHHHHHHc----CCCChhhHHHHHHHH--HHHcCCHHHHHHHhhcCCh-hhcCchhhhHHH
Confidence 334556666666777787766555544 33322 22222222 2347999999999988732 234445556666
Q ss_pred HHHHHH-HcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH---HHHHHHHH
Q 038852 181 LINTYC-DEGKVDEGMNVFRRIIETAPVGP-SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSL---VYNNLISG 255 (851)
Q Consensus 181 Li~~~~-~~g~~~~A~~l~~~~~~~~~~~p-~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---~~~~Li~~ 255 (851)
|+.+-. ...+..+|+++|+.+.-..|-.. .......-+......|+.+++..+-.....+- ..+.+ .+..+..+
T Consensus 153 Lv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF-~~S~YA~~F~~~F~~~ 231 (421)
T PRK12798 153 LVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRF-RHSPYASQFAQRFVDL 231 (421)
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHH
Confidence 666544 44678899999999865543311 12234445566778899998887777666542 21322 23333334
Q ss_pred HHhcCCHHHHHHHHHHHHh-cCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-----HhC
Q 038852 256 FLNLGNLEKANELFDELKQ-RCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVL-----LKH 329 (851)
Q Consensus 256 ~~~~g~~~~A~~~~~~~~~-~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~-----~~~ 329 (851)
+.+.++-..-.. +..++. .....-..+|..+...-.-.|+.+.|...-++++......+. -...+..| .-.
T Consensus 232 ~~~~~d~~~~~~-l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~--~~~ra~LY~aaa~v~s 308 (421)
T PRK12798 232 VVRLDDEIRDAR-LVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSA--DAARARLYRGAALVAS 308 (421)
T ss_pred HHhccccccHHH-HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCc--chHHHHHHHHHHccCc
Confidence 444443222222 233322 233334567888888888889998888888777765422211 11122222 234
Q ss_pred CCHHHHHHHHHHHHHcCCCC
Q 038852 330 EKKEEAQALFEQMLDNHQPP 349 (851)
Q Consensus 330 g~~~~A~~l~~~m~~~~~~p 349 (851)
.+++++++.+..+-...+.+
T Consensus 309 ~~~~~al~~L~~I~~~~L~~ 328 (421)
T PRK12798 309 DDAESALEELSQIDRDKLSE 328 (421)
T ss_pred ccHHHHHHHHhcCChhhCCh
Confidence 56777777777765554444
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.94 E-value=0.76 Score=30.25 Aligned_cols=29 Identities=14% Similarity=0.021 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhcCCC
Q 038852 539 DFVRETFGKAGRGEEIERVLNADRWGYAA 567 (851)
Q Consensus 539 ~~L~~~~~~~G~~~eA~~ll~~~~~~~~~ 567 (851)
..++.++.+.|++++|.++|+++...||+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34667777788888888888888887775
|
|
| >KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.91 E-value=1.4e+02 Score=41.87 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=13.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 038852 182 INTYCDEGKVDEGMNVFRRIIE 203 (851)
Q Consensus 182 i~~~~~~g~~~~A~~l~~~~~~ 203 (851)
+..|...|.+++|..+|+++..
T Consensus 2489 a~s~eQ~G~~e~AQ~lyekaq~ 2510 (3550)
T KOG0889|consen 2489 ALSYEQLGFWEEAQSLYEKAQV 2510 (3550)
T ss_pred HHHHHHhhhHHHHhhHHHHHHH
Confidence 3345666677777766666543
|
|
| >PF14929 TAF1_subA: TAF RNA Polymerase I subunit A | Back alignment and domain information |
|---|
Probab=87.85 E-value=59 Score=37.60 Aligned_cols=136 Identities=13% Similarity=0.094 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHH
Q 038852 409 EMLEEAEKLLREISTKSLSPDVTTFRTLIDA--YLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAP 486 (851)
Q Consensus 409 g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ 486 (851)
|++++|+..+++....+ .....+..-+.. ++.....+.-..+|+++...++.-.... -.+..-......+..
T Consensus 323 ~~l~eal~~~e~~c~~~--~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~l----e~l~~~~~~~~~~~~ 396 (547)
T PF14929_consen 323 GRLKEALNELEKFCISS--TCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSL----ERLILLHQKDYSAEQ 396 (547)
T ss_pred ccHHHHHHHHHHhccCC--CccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHH----HHHHhhhhhHHHHHH
Confidence 78888888887765432 122222222222 3333467777888888888765332222 222222333566666
Q ss_pred HHHHH-hhCCCCCCHHHHHHHHHHHHh-cCCh-------HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCC
Q 038852 487 ILTKM-GEKDPKPDFLIYDVVVRGLCN-EGLF-------DMSKDIVDQMMKY-GVGITPALQDFVRETFGKAGR 550 (851)
Q Consensus 487 ll~~m-~~~~~~pd~~~~~~ll~a~~~-~g~~-------~~A~~~~~~m~~~-g~~~~~~~~~~L~~~~~~~G~ 550 (851)
+++.+ ...++.|...+|.-++.++.+ .+++ ..+++++-.+++. +...+...|.++.+.+-+.-.
T Consensus 397 Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i~~ 470 (547)
T PF14929_consen 397 LLEMIALHLDLVPSHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKIFD 470 (547)
T ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHhhh
Confidence 77644 233555888899888888877 3333 3444444444443 334455666666555544333
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.59 E-value=6 Score=41.16 Aligned_cols=101 Identities=19% Similarity=0.125 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 357 DTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTL 436 (851)
Q Consensus 357 ~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L 436 (851)
.+...++..-....++++++.++-++.... ...+.++...+ .+++.| -.-+.++++.++..=+..|+-+|-++++.|
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~-~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSP-NAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCc-chhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchhhHHHH
Confidence 344445555555677888888887775432 21222222211 222222 234667888888888888999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 437 IDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 437 l~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
++.+.+.+++.+|..+...|+...
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999998888877543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.52 E-value=0.0071 Score=56.90 Aligned_cols=53 Identities=13% Similarity=0.238 Sum_probs=26.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFD 270 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~ 270 (851)
+..+.+.+.......+++.+...+..-+....+.++..|++.++.++.+++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444445555555555555544433345555555555555555555554444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.48 E-value=1.5 Score=29.04 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 038852 432 TFRTLIDAYLKVERIDDALELFNRMVES 459 (851)
Q Consensus 432 ~~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 459 (851)
.|..++.+|...|++++|++.|+++++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4455555666666666666666665554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.41 E-value=13 Score=39.06 Aligned_cols=97 Identities=22% Similarity=0.264 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVP--NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~p--d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
.|.-=++-|.+.++|..|+..|.+.++..--.+ +++.|+.-..+-...|++..|+.-...++..++. ....|..=+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~--h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT--HLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc--hhhhhhhhh
Confidence 344456677888889999999888877544334 3667888888888888888888888888877665 556666667
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 038852 219 KGFVDAGRIGEAVDLLRDMLS 239 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~ 239 (851)
.|+....++++|+...++.+.
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 777777888888877776644
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.40 E-value=5 Score=45.07 Aligned_cols=88 Identities=11% Similarity=0.083 Sum_probs=42.5
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHH
Q 038852 223 DAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQ 302 (851)
Q Consensus 223 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 302 (851)
..|+...|..++..+......-..+....|+..+.+.|....|-.++...+... .....++..+.++|....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 345555555555555443322222334445555555555555555555544443 2234444444555555555555555
Q ss_pred HHHHHHHhc
Q 038852 303 SYKSLMERN 311 (851)
Q Consensus 303 l~~~~~~~~ 311 (851)
.|+.+++.+
T Consensus 698 ~~~~a~~~~ 706 (886)
T KOG4507|consen 698 AFRQALKLT 706 (886)
T ss_pred HHHHHHhcC
Confidence 555554443
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.33 E-value=69 Score=37.81 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---HcCChhHHHHHHHHHHHc
Q 038852 121 DAASYLARQAVFSRIRPTVFTCNAIIAAMY---RAKRYDDAVALFKYFFDQ 168 (851)
Q Consensus 121 ~~A~~l~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~l~~~~~~~ 168 (851)
.+...+|-.+++..-..| .....|...|. ..+..+.|+.....+++.
T Consensus 45 ~DvSslF~dvvk~~~T~d-lelKKlvyLYl~nYa~~~P~~a~~avnt~~kD 94 (734)
T KOG1061|consen 45 KDVSSLFPDVVKCMQTRD-LELKKLVYLYLMNYAKGKPDLAILAVNTFLKD 94 (734)
T ss_pred cchHhhhHHHHhhcccCC-chHHHHHHHHHHHhhccCchHHHhhhhhhhcc
Confidence 334455666665443334 33444444443 357788888887777653
|
|
| >PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G [] | Back alignment and domain information |
|---|
Probab=87.27 E-value=46 Score=35.74 Aligned_cols=81 Identities=11% Similarity=0.052 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHH
Q 038852 227 IGEAVDLLRDMLSRQL----GADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQ 302 (851)
Q Consensus 227 ~~~A~~l~~~m~~~g~----~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 302 (851)
.++|.+.|++.+..+. ..+......++....+.|+.+....+++...... +......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~---~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNST---SPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTS---THHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccC---CHHHHHHHHHhhhccCCHHHHHH
Confidence 3455555555554311 2344444444555555555444333333333221 33444455555555555555555
Q ss_pred HHHHHHHh
Q 038852 303 SYKSLMER 310 (851)
Q Consensus 303 l~~~~~~~ 310 (851)
+++.++..
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 55555553
|
The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B. |
| >KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.25 E-value=9.6 Score=43.11 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=10.2
Q ss_pred CCCCCCCCcCcccccccc
Q 038852 758 GQQPSGYNRMGEQQHFGW 775 (851)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~ 775 (851)
|.||..+......|..+|
T Consensus 498 gapp~~p~~g~~~~~~~~ 515 (600)
T KOG1676|consen 498 GAPPQSPATGASDYSPQW 515 (600)
T ss_pred CCCCCCCCCCccccchhh
Confidence 455555555555565656
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.87 E-value=20 Score=37.54 Aligned_cols=60 Identities=15% Similarity=0.284 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 038852 434 RTLIDAYLKVERIDDALELFNRMVESGL-RVVVSFGTKVFNELITKGKVAECAPILTKMGE 493 (851)
Q Consensus 434 ~~Ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~ 493 (851)
..|..+-.+.|+..+|.+.|+.+.+.-. .....+...|+.++....-+.++..++-+.-+
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3455555567777777777776665421 11122223455566665555555555555443
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.86 E-value=69 Score=38.64 Aligned_cols=56 Identities=11% Similarity=0.170 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038852 499 DFLIYDVVVRGLCNEGLFDMSKDIVDQMMK-YGVGITPALQDFVRETFGKAGRGEEI 554 (851)
Q Consensus 499 d~~~~~~ll~a~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~L~~~~~~~G~~~eA 554 (851)
|..++..-..-+...|++..|++++.++++ .+-..+.+.+..+++++...|--..|
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H~~ 1286 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNHLA 1286 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchHhH
Confidence 555666556666677888888888888875 45556777777777777777755333
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.86 E-value=13 Score=41.91 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=68.0
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCChhHHHHHHHHHHHcCC--CCCCHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMY-RAKRYDDAVALFKYFFDQAD--IVPNIVSYNNL 181 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~~~~~~~--~~pd~~~~~~L 181 (851)
+.+++-+..+.+.|.+..|.+..+.++...+..|......+|+.|+ ++++|.--+++++....... .-||-..-.+|
T Consensus 343 L~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~Al 422 (665)
T KOG2422|consen 343 LALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLAL 422 (665)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHH
Confidence 3567778888899999999998888887777667888888888886 67888888888887632211 12343222344
Q ss_pred HHHHHHcCC---hHHHHHHHHHHHHhC
Q 038852 182 INTYCDEGK---VDEGMNVFRRIIETA 205 (851)
Q Consensus 182 i~~~~~~g~---~~~A~~l~~~~~~~~ 205 (851)
+..|..... -..|+..+.++++..
T Consensus 423 A~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 423 ARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred HHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 555554443 345666666666654
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=86.78 E-value=27 Score=41.79 Aligned_cols=46 Identities=11% Similarity=0.205 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038852 156 DDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIE 203 (851)
Q Consensus 156 ~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~ 203 (851)
++.++.++++++..++.-+......|++ ...|++.+|+.+++.++.
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia 226 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHH
Confidence 3445555555555555444444444432 334666666666665543
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.78 E-value=1.1 Score=49.37 Aligned_cols=103 Identities=16% Similarity=0.160 Sum_probs=58.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 038852 146 IAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA 224 (851)
Q Consensus 146 i~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~ 224 (851)
+..+.+.++++.|+.++.++++.. || +..|..-..++.+.+++..|+.-+.++++.++. ....|..-+.++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld---pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~--~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD---PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT--YIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC---CcceeeechhhhhheeechhhhHHHHHHhhhhcCch--hhheeeeccHHHHhH
Confidence 444556677777777777776643 33 333444445667777777777777777766533 334444445555556
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038852 225 GRIGEAVDLLRDMLSRQLGADSLVYNNLISG 255 (851)
Q Consensus 225 g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~ 255 (851)
+.+.+|+..|+..... .|+..-...++.-
T Consensus 86 ~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKL--APNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHHHHhhhc--CcCcHHHHHHHHH
Confidence 6666666666665543 3344434434433
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.52 E-value=48 Score=35.20 Aligned_cols=104 Identities=11% Similarity=0.076 Sum_probs=51.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHH
Q 038852 320 NTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYN 399 (851)
Q Consensus 320 ~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~ 399 (851)
..++..|...+++.+|+.+...++..-.+-|....-.+++..=-.+|....++.+|..-+..+.......-..|-...-.
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 34677788888888888776665542111111100122233334456666677777766665543322211112111111
Q ss_pred HHHHH--HHhcCCHHHHHHHHHHHHh
Q 038852 400 NIIAR--YCENEMLEEAEKLLREIST 423 (851)
Q Consensus 400 ~li~~--~~~~g~~~~A~~l~~~m~~ 423 (851)
.|..+ ++...++.-|..+|-+..+
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfE 237 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFE 237 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHc
Confidence 11111 2334677777777766655
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.57 E-value=21 Score=41.53 Aligned_cols=114 Identities=16% Similarity=0.165 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc-------hhhHHHHHHHHHHcCCHHHH
Q 038852 231 VDLLRDMLSRQLGAD---SLVYNNLISGFLNLGNLEKANELFDELKQRCLVYD-------GVVNATFMEWWFNQGKDKEA 300 (851)
Q Consensus 231 ~~l~~~m~~~g~~pd---~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d-------~~~~~~li~~~~~~g~~~~A 300 (851)
..++++|..+--.|+ ..+...++..|....|++..+++.+.+.+.--..+ ...|...++--.+-||-++|
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakA 262 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKA 262 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHH
Confidence 344555555433333 24455556666666666666666665554310000 01122222222334566666
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHH---------HHHhCCCHHHHHHHHHHHHH
Q 038852 301 MQSYKSLMERNFRMTPATCNTLLE---------VLLKHEKKEEAQALFEQMLD 344 (851)
Q Consensus 301 ~~l~~~~~~~~~~~~~~~~~~Li~---------~~~~~g~~~~A~~l~~~m~~ 344 (851)
++..-.+++..-......|...++ .|...+..+.|++.|+++.+
T Consensus 263 L~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe 315 (1226)
T KOG4279|consen 263 LNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE 315 (1226)
T ss_pred HHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc
Confidence 666655555432211122222222 22334456677777777765
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=85.41 E-value=24 Score=36.43 Aligned_cols=65 Identities=9% Similarity=0.080 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 318 TCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 318 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
....|+..|.+.|++++|+++|+.+...-.......+...+...+..++.+.|+.++.+.+.-++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34457788888899999999998885432211111224556667777888888888777665544
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=85.17 E-value=29 Score=41.54 Aligned_cols=85 Identities=16% Similarity=0.252 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------------CCHHHHHHHHHHHH
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG-------------ADSLVYNNLISGFL 257 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-------------pd~~~~~~Li~~~~ 257 (851)
.++..+.++++.+..++..+......+++ ...|++.+|+.+++.++..+.. .|...+..|++.+.
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~ 257 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALA 257 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35666777777766656556655555543 3468889999888876644311 12222333333332
Q ss_pred hcCCHHHHHHHHHHHHhcCCc
Q 038852 258 NLGNLEKANELFDELKQRCLV 278 (851)
Q Consensus 258 ~~g~~~~A~~~~~~~~~~~~~ 278 (851)
.+++++++.+++++...|..
T Consensus 258 -~~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 258 -AGDGPEILAVADEMALRSLS 277 (830)
T ss_pred -cCCHHHHHHHHHHHHHhCCC
Confidence 35666666666666655544
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.06 E-value=12 Score=31.82 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038852 480 KVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVR 542 (851)
Q Consensus 480 ~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~ 542 (851)
|.-++.+-++.+...++.|+..+..+.+++|.+.+++..|+++|+-++.+. .....+|.+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 445666777777778888999999999999999999999999999877322 12344555544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=84.91 E-value=55 Score=36.72 Aligned_cols=84 Identities=15% Similarity=0.132 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038852 479 GKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGL-----FDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEE 553 (851)
Q Consensus 479 g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~-----~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~e 553 (851)
.+.+.|+.++.+|++.|..|....-..++.++...|. ...|...++.+...|++.-.-.....+-.++.+-+-..
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~~~l~~~~~~l~~~pksn~ 323 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIALAQAVIYLALAPKSNA 323 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCCccH
Confidence 5566666666666665555444443333334333332 22333334444444543333333333333444444444
Q ss_pred HHHHHHhhh
Q 038852 554 IERVLNADR 562 (851)
Q Consensus 554 A~~ll~~~~ 562 (851)
+...+++..
T Consensus 324 ~~~a~~~a~ 332 (413)
T PRK13342 324 AYTAINAAL 332 (413)
T ss_pred HHHHHHHHH
Confidence 444444333
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.83 E-value=0.95 Score=47.51 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=49.4
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038852 151 RAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEA 230 (851)
Q Consensus 151 ~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A 230 (851)
..|.+++|++.|...+.... +....|..-..+++++++...|++-++.+++.++. ...-|-.-..+....|++++|
T Consensus 126 n~G~~~~ai~~~t~ai~lnp--~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D--sa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNP--PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD--SAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccCC--chhhhcccccceeeeccCCchhhhhhhhhhccCcc--cccccchhhHHHHHhhchHHH
Confidence 45666666666666554321 33444555555666666666666666666665543 222333344444455666666
Q ss_pred HHHHHHHHhcCCC
Q 038852 231 VDLLRDMLSRQLG 243 (851)
Q Consensus 231 ~~l~~~m~~~g~~ 243 (851)
...|+.+.+.++.
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 6666666665543
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.75 E-value=0.84 Score=47.87 Aligned_cols=90 Identities=17% Similarity=0.104 Sum_probs=64.8
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKA 265 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 265 (851)
...|.+++|++.|...++.++. ....|..-..++++.++...|++-++.+++.+.. ...-|-.-..+-..+|++++|
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~--~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPP--LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccCCc--hhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHH
Confidence 4567788888888888887654 6667777778888888888888888888776543 333454455555667888888
Q ss_pred HHHHHHHHhcCCc
Q 038852 266 NELFDELKQRCLV 278 (851)
Q Consensus 266 ~~~~~~~~~~~~~ 278 (851)
...|+...+.+..
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 8888877776554
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=84.66 E-value=5.3 Score=34.25 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=27.0
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 150 YRAKRYDDAVALFKYFFDQADIVPN-------IVSYNNLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 150 ~~~g~~~~A~~l~~~~~~~~~~~pd-------~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
.+.|++.+|++.+.++++.....-+ ......++......|++++|+..++++++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3566666665555554432111111 122233444555566666666666666544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.61 E-value=2.2 Score=29.67 Aligned_cols=27 Identities=30% Similarity=0.645 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIE 203 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~ 203 (851)
+++.|+.+|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555555555555555555555543
|
|
| >KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.43 E-value=66 Score=34.91 Aligned_cols=90 Identities=10% Similarity=0.036 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHcCCcc---
Q 038852 399 NNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRT------------LIDAYLKVERIDDALELFNRMVESGLRV--- 463 (851)
Q Consensus 399 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~------------Ll~~~~~~g~~~~A~~~~~~m~~~~~~~--- 463 (851)
..|...+...|++++|.+++.++. +.||.+ -++.|...+||-.|--+-+++...-+..
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~ 207 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDV 207 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccH
Confidence 456677888999999999987653 233322 2456777888888877777766543322
Q ss_pred ---chhHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 038852 464 ---VVSFGTKVFNELITKGKVAECAPILTKMGEKD 495 (851)
Q Consensus 464 ---~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~ 495 (851)
-..+|..++......+.+-++.+.|+...+.+
T Consensus 208 ~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~ 242 (439)
T KOG1498|consen 208 QELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTG 242 (439)
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHhccc
Confidence 34567777777777888888888888876653
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.21 E-value=14 Score=31.80 Aligned_cols=48 Identities=13% Similarity=0.303 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038852 229 EAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRC 276 (851)
Q Consensus 229 ~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~ 276 (851)
+..+-++.+...++.|+..+..+.+++|.+.+|+..|.++|+-++.+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~ 75 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC 75 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 556667777777788888888888888888888888888888877653
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.07 E-value=2.2 Score=28.33 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
+|..+..+|...|++++|++.|+++++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455555555555555555555555543
|
... |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=83.88 E-value=8.8 Score=47.67 Aligned_cols=218 Identities=18% Similarity=0.183 Sum_probs=108.4
Q ss_pred CCCccHHHHHHHHHHcCCHHHHHHHHHHHHH-cC--CCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHcCCCCCCHHH
Q 038852 102 GPRLNLHNRVQSLIRAGDLDAASYLARQAVF-SR--IRPTVFTCNAIIAAMYRA-KRYDDAVALFKYFFDQADIVPNIVS 177 (851)
Q Consensus 102 ~~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~-~~--~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~~~~~~~~~pd~~~ 177 (851)
.||.-....++.++..++|.+|..+.++-.- .+ ..-|...|..-+..+.+. ++.+ -+.+|-.-++..++.. ..
T Consensus 692 ~PR~LVL~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~-~lnLFls~L~~EDvt~--tm 768 (928)
T PF04762_consen 692 YPRALVLAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVD-YLNLFLSSLRNEDVTK--TM 768 (928)
T ss_pred ccHhHHHHHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHH-HHHHHHHhcccccccc--cc
Confidence 4555667789999999999999888776221 01 122344444445555443 4433 3333333223221111 11
Q ss_pred HHHHH------------HHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCC
Q 038852 178 YNNLI------------NTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG--RIGEAVDLLRDMLSRQLG 243 (851)
Q Consensus 178 ~~~Li------------~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g--~~~~A~~l~~~m~~~g~~ 243 (851)
|.... ......++++...+.+.+.++.. . -....+..++.+|++.+ ++++|+.+..++.+.
T Consensus 769 Y~~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~-~-~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~--- 843 (928)
T PF04762_consen 769 YKDTYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEKP-K-DKDKYLQPILTAYVKKSPPDLEEALQLIKELREE--- 843 (928)
T ss_pred cccccccccccccccccCCCccccHHHHHHHHHHHHhccc-c-cchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc---
Confidence 11111 11123344555555555555421 1 13345677888999999 999999999999876
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 038852 244 ADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLL 323 (851)
Q Consensus 244 pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li 323 (851)
+.......+...+-+ -.+.++|+.++.. .|. -..++-+-....|.+|=+-+++++.+... + .-...|
T Consensus 844 -~~~~ae~alkyl~fL---vDvn~Ly~~ALG~---YDl--~Lal~VAq~SQkDPKEYLPfL~~L~~l~~--~--~rry~I 910 (928)
T PF04762_consen 844 -DPESAEEALKYLCFL---VDVNKLYDVALGT---YDL--ELALMVAQQSQKDPKEYLPFLQELQKLPP--L--YRRYKI 910 (928)
T ss_pred -ChHHHHHHHhHheee---ccHHHHHHHHhhh---cCH--HHHHHHHHHhccChHHHHHHHHHHHhCCh--h--heeeeH
Confidence 222222222222221 1223333333321 011 11223333444566666666665554421 0 011122
Q ss_pred HHHHhCCCHHHHHHHHHHH
Q 038852 324 EVLLKHEKKEEAQALFEQM 342 (851)
Q Consensus 324 ~~~~~~g~~~~A~~l~~~m 342 (851)
+ ...+++++|++.+.++
T Consensus 911 D--~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 911 D--DHLKRYEKALRHLSAC 927 (928)
T ss_pred h--hhhCCHHHHHHHHHhh
Confidence 2 3458899998877653
|
|
| >KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.67 E-value=37 Score=41.70 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 038852 318 TCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKK 381 (851)
Q Consensus 318 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 381 (851)
.|..++..+.+.+..+++..+-..+++. . ++..+.-..+++.+.+.....|.+-+|.+.+-.
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l-~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~ 1046 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-L-PDDNPSVALISTTVFNHHLDLGHWFQAYKAILR 1046 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-C-CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc
Confidence 3555666666667777777766666653 1 111111334555566666666666666555443
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=83.64 E-value=1.2e+02 Score=37.30 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Q 038852 433 FRTLIDAYLKVERIDDALELFNRMVESGLRV 463 (851)
Q Consensus 433 ~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~ 463 (851)
...+++++. .++...++.+++++++.|..+
T Consensus 251 I~~lidAL~-~~D~a~al~~l~~Li~~G~dp 280 (824)
T PRK07764 251 IDEAVDALA-AGDGAALFGTVDRVIEAGHDP 280 (824)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 334445444 577888888888888877543
|
|
| >PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known | Back alignment and domain information |
|---|
Probab=83.62 E-value=65 Score=34.20 Aligned_cols=113 Identities=15% Similarity=0.179 Sum_probs=54.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
.++..+.+.+++.+.++.++.+.. ...-...+..+...|+|..|++++.+..+.- . +..-|..+-..-.
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~-------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L~~-- 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT-------VQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHLSS-- 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHHhH--
Confidence 344445555555555555555532 2233445566667777777777776665531 1 1111111111111
Q ss_pred CCHHHHHHHHHHHHh-----cCCccchhhHHHHHHHHHHcCCHHHHHHHH
Q 038852 260 GNLEKANELFDELKQ-----RCLVYDGVVNATFMEWWFNQGKDKEAMQSY 304 (851)
Q Consensus 260 g~~~~A~~~~~~~~~-----~~~~~d~~~~~~li~~~~~~g~~~~A~~l~ 304 (851)
++++-....+++++ .....|...|..+..+|...|+...+.+-+
T Consensus 172 -~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 172 -QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 12222222222221 122357777888888887777766655433
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=83.49 E-value=83 Score=35.33 Aligned_cols=33 Identities=18% Similarity=0.040 Sum_probs=20.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038852 408 NEMLEEAEKLLREISTKSLSPDVTTFRTLIDAY 440 (851)
Q Consensus 408 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~ 440 (851)
..+.+.|+.++.+|++.|..|....-..++.++
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 467788888888888777665544434333333
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.41 E-value=90 Score=35.69 Aligned_cols=54 Identities=20% Similarity=0.158 Sum_probs=33.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 038852 220 GFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFL-NLGNLEKANELFDELK 273 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~-~~g~~~~A~~~~~~~~ 273 (851)
.+.+.|.+..|+++.+.++.....-|......+|+.|+ +..++.--++++++..
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34456777777777777766655546666666666654 4556666666666554
|
|
| >KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.40 E-value=33 Score=42.09 Aligned_cols=125 Identities=11% Similarity=0.089 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HH
Q 038852 357 DTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDV----TT 432 (851)
Q Consensus 357 ~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~ 432 (851)
..|..++..+...+..|.+..+-.++++.-+... .--..+++++.+-....|.+-+|.+.+-.- ||. ..
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~-ps~a~~~t~vFnhhldlgh~~qAy~ai~~n------pdserrrdc 1056 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDN-PSVALISTTVFNHHLDLGHWFQAYKAILRN------PDSERRRDC 1056 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHhhhchhhHHHHHHHHHcC------CcHHHHHHH
Confidence 3466777888888888888887777665433321 113456777777777788887777665332 343 24
Q ss_pred HHHHHHHHHHcCCHH------------HHHH-HHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHH
Q 038852 433 FRTLIDAYLKVERID------------DALE-LFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPIL 488 (851)
Q Consensus 433 ~~~Ll~~~~~~g~~~------------~A~~-~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll 488 (851)
...|+..++.+|.++ +... +++...+...-....+|..|...+...+++.+|-.+.
T Consensus 1057 LRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1057 LRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 455666666666543 3344 4444444444455667777777778888888876553
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.38 E-value=49 Score=39.79 Aligned_cols=73 Identities=7% Similarity=-0.012 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCCCccCHHHHHHHHHHHHHcCChHH
Q 038852 297 DKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNH-QPPNIQAVNSDTFNIMVNECFKHGKFSE 374 (851)
Q Consensus 297 ~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~~~~~~L~~~~~~~g~~~~ 374 (851)
.+.-.+.|.++++.--..|..+|..-..-+...|.+..|++++.++++.. ..+ +...|..++..+...|--..
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~-----t~~~~~~~~el~~~Lgw~H~ 1285 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESA-----TKDVAVLLAELLENLGWNHL 1285 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccc-----hhHHHHHHHHHHHHhCchHh
Confidence 33344455555443222344556555566667778888888888777632 233 56677778888888777633
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.25 E-value=15 Score=36.22 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=56.0
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCCH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ---LGADSLVYNNLISGFLNLGNL 262 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g---~~pd~~~~~~Li~~~~~~g~~ 262 (851)
.+.|| ++|++.|-.+.... .--+......|+..|. ..+.++++.++.++++.. -..|...+.+|+..|.+.|++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~-~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTP-ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hccCc-HHHHHHHHHHcCCC-CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 34444 56888888775443 3345556666665555 678899999998888742 356788999999999999999
Q ss_pred HHHH
Q 038852 263 EKAN 266 (851)
Q Consensus 263 ~~A~ 266 (851)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8885
|
|
| >PF14669 Asp_Glu_race_2: Putative aspartate racemase | Back alignment and domain information |
|---|
Probab=83.16 E-value=47 Score=32.29 Aligned_cols=57 Identities=14% Similarity=0.264 Sum_probs=35.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038852 507 VRGLCNEGLFDMSKDIVDQMMKY--------------GVGITPALQDFVRETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 507 l~a~~~~g~~~~A~~~~~~m~~~--------------g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~ 563 (851)
+-.|.+.-+|.+++++++.|-+. +....-.+.+..++++.+.|.+|.|+.++++-.|
T Consensus 139 m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLreseW 209 (233)
T PF14669_consen 139 MYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRESEW 209 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhccce
Confidence 33444445555555555555431 1223344566678899999999999999997443
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=83.12 E-value=14 Score=33.78 Aligned_cols=71 Identities=10% Similarity=0.090 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHc---CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 038852 137 PTVFTCNAIIAAMYRA---KRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPV 207 (851)
Q Consensus 137 ~~~~~~~~li~~~~~~---g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~ 207 (851)
.+..+-..+..++.+. .+..+.+.+|+++++......+......|.-++.+.++|++++++++.+++..+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 3444445566666654 4556778888888763222233445556777788999999999999999887654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.12 E-value=2.7 Score=29.27 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLS 239 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~ 239 (851)
+++.|+.+|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 555666666666666666666665554
|
|
| >COG4715 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.05 E-value=91 Score=35.50 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=35.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHH
Q 038852 286 TFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNE 365 (851)
Q Consensus 286 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~ 365 (851)
..+-.+.+.+...+++.+.++..... ..|..++..+...+...+|...+-+-.+.... . .........++..
T Consensus 308 r~v~~l~~a~~~~e~i~~~~~ea~~~-----~~yl~~v~llle~~~~~~a~~wl~~~~r~a~~-q--~~t~q~~q~l~el 379 (587)
T COG4715 308 REVPALASAGLQHEAIRLCEREAEGP-----GSYLDLVELLLESGEPSKAELWLARGIRTARE-Q--LQTTQLPQTLAEL 379 (587)
T ss_pred HhhhhhccchhhHHHHHHHHHHhcCc-----ccHHHHHHHHHhcCChhHHHHHHHHHHhhhhH-h--hhhhhhHHHHHHH
Confidence 33344444444444444444433221 23444444444444444444433332222111 0 0022333444444
Q ss_pred HHHcCChHHHHHHHHHh
Q 038852 366 CFKHGKFSEAIETFKKA 382 (851)
Q Consensus 366 ~~~~g~~~~A~~~~~~~ 382 (851)
+...|++-.|.++-...
T Consensus 380 ~~~~g~~~~a~~Laq~~ 396 (587)
T COG4715 380 KEEEGRLGFAAELAQEA 396 (587)
T ss_pred HHhhcchHHHHHHHHHH
Confidence 44444444444444443
|
|
| >COG4715 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.86 E-value=93 Score=35.45 Aligned_cols=94 Identities=14% Similarity=0.070 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CCHHHHHHHHH
Q 038852 247 LVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR--MTPATCNTLLE 324 (851)
Q Consensus 247 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~--~~~~~~~~Li~ 324 (851)
..+...+.++...+...+++.+.++.... ...|..+..++...+...+|...+-+-.+..-. -+....-.+++
T Consensus 304 ~~~~r~v~~l~~a~~~~e~i~~~~~ea~~-----~~~yl~~v~llle~~~~~~a~~wl~~~~r~a~~q~~t~q~~q~l~e 378 (587)
T COG4715 304 VVVDREVPALASAGLQHEAIRLCEREAEG-----PGSYLDLVELLLESGEPSKAELWLARGIRTAREQLQTTQLPQTLAE 378 (587)
T ss_pred HHHHHhhhhhccchhhHHHHHHHHHHhcC-----cccHHHHHHHHHhcCChhHHHHHHHHHHhhhhHhhhhhhhHHHHHH
Confidence 45556677777888888888877766542 345667777788888877777665444333221 12234556778
Q ss_pred HHHhCCCHHHHHHHHHHHHHc
Q 038852 325 VLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 325 ~~~~~g~~~~A~~l~~~m~~~ 345 (851)
.+...|+.-.|.++-......
T Consensus 379 l~~~~g~~~~a~~Laq~~F~r 399 (587)
T COG4715 379 LKEEEGRLGFAAELAQEAFFR 399 (587)
T ss_pred HHHhhcchHHHHHHHHHHccC
Confidence 888888888888887776653
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.84 E-value=2.1 Score=47.15 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=71.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTV-FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
+.+.+..+++.++++.|+.++.++++.. +|- ..|..-..++.+.+++..|+.=+.++++... .....|..-+.++
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP--~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDP--TYIKAYVRRGTAV 82 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCc--hhhheeeeccHHH
Confidence 4566788899999999999999999654 433 3333333677899999999998888877541 2344566666677
Q ss_pred HHcCChHHHHHHHHHHHHhCCC
Q 038852 186 CDEGKVDEGMNVFRRIIETAPV 207 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~ 207 (851)
.+.+++.+|+..|+......|.
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPN 104 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcC
Confidence 7888899999999988775544
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=82.72 E-value=9.9 Score=38.25 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=43.1
Q ss_pred HHHHHHHHHhCCC-------HHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCC
Q 038852 319 CNTLLEVLLKHEK-------KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPK 387 (851)
Q Consensus 319 ~~~Li~~~~~~g~-------~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~ 387 (851)
+..++..|...|+ +..|++.|+++......|.....+..+...++..+.+.|++++|.++|.++.....
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 3344455555555 34567777777665444322111344566677888888999999999988876543
|
|
| >KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.68 E-value=68 Score=33.78 Aligned_cols=105 Identities=10% Similarity=-0.031 Sum_probs=53.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHH-
Q 038852 320 NTLLEVLLKHEKKEEAQALFEQMLDNH-QPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAG- 397 (851)
Q Consensus 320 ~~Li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~- 397 (851)
..|...|.+.++|+.|-.++..+-..+ ..-........++..+++.|.+.++..+|..+..+..-...... +...
T Consensus 107 l~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~---Ne~Lq 183 (399)
T KOG1497|consen 107 LHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESS---NEQLQ 183 (399)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccc---CHHHH
Confidence 345566666666666666655443221 11111111234667778888888888888887776532211110 2221
Q ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038852 398 ---YNNIIARYCENEMLEEAEKLLREISTKSLS 427 (851)
Q Consensus 398 ---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 427 (851)
-.+.++++-..++|-+|-.-|.++....+-
T Consensus 184 ie~kvc~ARvlD~krkFlEAAqrYyels~~ki~ 216 (399)
T KOG1497|consen 184 IEYKVCYARVLDYKRKFLEAAQRYYELSQRKIV 216 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 122333344455565555555555544443
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=82.65 E-value=1.4e+02 Score=37.38 Aligned_cols=93 Identities=10% Similarity=-0.079 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHH
Q 038852 394 DVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFN 473 (851)
Q Consensus 394 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~ 473 (851)
|...-...+.++...|..+.+...+..+++. +|..+-...+.++.+.+. +++...+..+++. ++...-...+.
T Consensus 788 d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~D---~~~~VR~~A~~ 860 (897)
T PRK13800 788 DPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPALVEALTD---PHLDVRKAAVL 860 (897)
T ss_pred CHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHHHHHhcC---CCHHHHHHHHH
Confidence 4444555555555555544333333333332 233333344444444443 3344444444432 12222223444
Q ss_pred HHHHcCCHHHHHHHHHHHhh
Q 038852 474 ELITKGKVAECAPILTKMGE 493 (851)
Q Consensus 474 ~~~~~g~~~~A~~ll~~m~~ 493 (851)
++.+.+.-..+...+..+++
T Consensus 861 aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 861 ALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhccCCCHHHHHHHHHHHh
Confidence 44443223345555555444
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=82.59 E-value=81 Score=34.58 Aligned_cols=31 Identities=35% Similarity=0.352 Sum_probs=15.8
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHcCCcc
Q 038852 433 FRTLIDAYLK---VERIDDALELFNRMVESGLRV 463 (851)
Q Consensus 433 ~~~Ll~~~~~---~g~~~~A~~~~~~m~~~~~~~ 463 (851)
+..++.++.| -.+.+.|+-++.+|++.|..|
T Consensus 249 hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp 282 (436)
T COG2256 249 HYDLISALHKSVRGSDPDAALYYLARMIEAGEDP 282 (436)
T ss_pred HHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCH
Confidence 3344444443 245555666666666655433
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.58 E-value=21 Score=30.84 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038852 481 VAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRE 543 (851)
Q Consensus 481 ~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~ 543 (851)
.-+..+-++.+...++.|+..+..+.+++|.+.+++..|+++|+-++.+- .....+|.+++.
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 33566677778888899999999999999999999999999999887532 122226665543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=82.56 E-value=43 Score=34.68 Aligned_cols=87 Identities=11% Similarity=-0.008 Sum_probs=44.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH----
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN---- 293 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~---- 293 (851)
|.+++..|++.+++...-.....--+.-..+...-|-.|.+.++...+.++-...+..--.-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5566667777776665544443322223344555556666777776666666665544322233334444444332
Q ss_pred -cCCHHHHHHHH
Q 038852 294 -QGKDKEAMQSY 304 (851)
Q Consensus 294 -~g~~~~A~~l~ 304 (851)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 34444444443
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.41 E-value=2.6 Score=27.54 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=12.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
.++.++.+.|++++|+++|+++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444444555555555555555444
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=82.36 E-value=42 Score=34.72 Aligned_cols=126 Identities=9% Similarity=-0.009 Sum_probs=73.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccc
Q 038852 398 YNNIIARYCENEMLEEAEKLLREISTKS-----LSPDVT--------TFRTLIDAYLKVERIDDALELFNRMVESGLRVV 464 (851)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~pd~~--------~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~ 464 (851)
.....+.+.-..||..|++..++-.+.= .+.+.. ....=|.+++..+++.+++.+.-.....--+..
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP 117 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC
Confidence 3344445555778888888877654420 111110 112235677777888887776655554433334
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-----hcCChHHHHHHH
Q 038852 465 VSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLC-----NEGLFDMSKDIV 523 (851)
Q Consensus 465 ~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~-----~~g~~~~A~~~~ 523 (851)
..+...-|..|.+.+....+.++-...+..--.-+...|..++..|. =.|.+++|+++.
T Consensus 118 pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 44555566677888888887777777665432223344666555543 367778777766
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=82.31 E-value=21 Score=39.47 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=32.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--HcCChhHHHHHHHHHHH
Q 038852 109 NRVQSLIRAGDLDAASYLARQAVFSRIRPTVF--TCNAIIAAMY--RAKRYDDAVALFKYFFD 167 (851)
Q Consensus 109 ~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~l~~~~~~ 167 (851)
..+..+.+.++|..|..+++.+... +..+.. .+..|..+|. ..-++++|.+.|+..+.
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4455666677777777777766654 333222 3444444443 34556666666666543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.14 E-value=15 Score=36.19 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHH
Q 038852 298 KEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEA 375 (851)
Q Consensus 298 ~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A 375 (851)
+.|++.|-.+...+.-.++.....|+..|. ..+.++++.++.++++....- ..+|.+++..|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~--~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD--DNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444443334444444444443 456666666666666532211 122666666666666666666655
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.76 E-value=1.5e+02 Score=37.03 Aligned_cols=76 Identities=13% Similarity=0.112 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----C---CCHHH----HHHHHHHHHHcCCCCCCCccCHHHHHHHH
Q 038852 295 GKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLK----H---EKKEE----AQALFEQMLDNHQPPNIQAVNSDTFNIMV 363 (851)
Q Consensus 295 g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~----~---g~~~~----A~~l~~~m~~~~~~p~~~~~~~~~~~~L~ 363 (851)
=.++.|...+++|+..-...+...+..+..+|.. . +...+ |..++..+....+. +...+..++
T Consensus 571 F~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~l~~~~s~~------d~~slE~vl 644 (1251)
T KOG0414|consen 571 FGIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSKLLIDASIG------DLTSLEEVL 644 (1251)
T ss_pred hCCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHhccccc------chhhHHHHH
Confidence 3455666666666655444444455555555532 2 22223 34444444433222 455666777
Q ss_pred HHHHHcCChHHHH
Q 038852 364 NECFKHGKFSEAI 376 (851)
Q Consensus 364 ~~~~~~g~~~~A~ 376 (851)
..+...|.++.+.
T Consensus 645 ~~lv~~~~Id~~V 657 (1251)
T KOG0414|consen 645 CELVARGYIDAAV 657 (1251)
T ss_pred HHHHhCCCccHHH
Confidence 7777777776653
|
|
| >PRK14700 recombination factor protein RarA; Provisional | Back alignment and domain information |
|---|
Probab=81.54 E-value=75 Score=33.50 Aligned_cols=46 Identities=15% Similarity=0.100 Sum_probs=30.7
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 038852 400 NIIARYC---ENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVER 445 (851)
Q Consensus 400 ~li~~~~---~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~ 445 (851)
.+|.++. +-.|.|.|+-++.+|++.|..|....-..++.++...|.
T Consensus 128 d~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 128 EQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3445544 356788888888888888777666666666666655553
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=81.53 E-value=3.6 Score=27.19 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 038852 432 TFRTLIDAYLKVERIDDALELFNRMVES 459 (851)
Q Consensus 432 ~~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 459 (851)
+|..++.+|...|++++|++.|+++++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566666777777777777777766654
|
... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.09 E-value=17 Score=38.05 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 038852 445 RIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGE 493 (851)
Q Consensus 445 ~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~ 493 (851)
+.++++.++..=+..|+-++..+++.+++.+.+.+++.+|..+...|+.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555443
|
|
| >KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=80.81 E-value=77 Score=33.17 Aligned_cols=277 Identities=15% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHH
Q 038852 135 IRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTY 214 (851)
Q Consensus 135 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~ 214 (851)
+.+.+..++.||+ ++.--++.|+.-+++ +...+.++....+..-| +|..+.-.+|..|-...-
T Consensus 107 i~~~~qvf~KliR------RykyLeK~fE~e~~k---------~Llflk~F~e~Er~KLA--~~Tal~l~nGt~~~tvl~ 169 (412)
T KOG2297|consen 107 IRNSVQVFQKLIR------RYKYLEKNFENEMRK---------FLLFLKLFEENERKKLA--MLTALLLSNGTLPATVLQ 169 (412)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHH---------HHHHHHccCHHHHHHHH--HHHHHHHhCCCCCHHHHH
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH
Q 038852 215 RHLTKGFVDAG-RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN 293 (851)
Q Consensus 215 ~~Li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~ 293 (851)
..+-..+++.| -..-|.++|...+ .....+.++..+.+.+.-++-+++| .++..+...+...+..
T Consensus 170 ~L~~d~LVkeGi~l~F~~~lFk~~~------~Ek~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~ 235 (412)
T KOG2297|consen 170 SLLNDNLVKEGIALSFAVKLFKEWL------VEKDINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTD 235 (412)
T ss_pred HHHHhhHHHHhHHHHHHHHHHHHHH------hhccHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhH
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChH
Q 038852 294 QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFS 373 (851)
Q Consensus 294 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~ 373 (851)
.|--+...-.-..+.....+ ..-..|..-..+...+++.+...++-.+....| +..+...+-.+......|.
T Consensus 236 agL~elvey~~~q~~~~a~k---Elq~~L~~q~s~e~p~~evi~~VKee~k~~nlP-----e~eVi~ivWs~iMsaveWn 307 (412)
T KOG2297|consen 236 AGLKELVEYHRNQQSEGARK---ELQKELQEQVSEEDPVKEVILYVKEEMKRNNLP-----ETEVIGIVWSGIMSAVEWN 307 (412)
T ss_pred hhHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCC-----CceEEeeeHhhhhHHHhhc
Q ss_pred HHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHH---------------HHHHHHHhCCCCCCHHHHHHHHH
Q 038852 374 EAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAE---------------KLLREISTKSLSPDVTTFRTLID 438 (851)
Q Consensus 374 ~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~---------------~l~~~m~~~g~~pd~~~~~~Ll~ 438 (851)
+-.++..+..-. ....|.-|+.+++..|+.+..+ +.|.+++..-.+.|+.+-..++.
T Consensus 308 Kkeelva~qalr--------hlK~yaPLL~af~s~g~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfYk~dVLsEe~IL~ 379 (412)
T KOG2297|consen 308 KKEELVAEQALR--------HLKQYAPLLAAFCSQGQSELELLLKVQEYCYENIHFMKAFQKIVVLFYKADVLSEETILK 379 (412)
T ss_pred hHHHHHHHHHHH--------HHHhhhHHHHHHhcCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 038852 439 AYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 439 ~~~~~g~~~~A~~~~~~m~~ 458 (851)
-|.+......-..+++.|..
T Consensus 380 Wyk~gh~~KGk~~Fleqmkk 399 (412)
T KOG2297|consen 380 WYKEGHVAKGKSVFLEQMKK 399 (412)
T ss_pred HHHhccccccHHHHHHHHHH
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=80.78 E-value=18 Score=30.79 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=29.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCC
Q 038852 198 FRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA-DSLVYNNLISGFLNLGN 261 (851)
Q Consensus 198 ~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~Li~~~~~~g~ 261 (851)
++..++.+|. |......+...+...|++++|++.|-++++..... +...-..|+.++...|.
T Consensus 11 l~~~~a~~P~--D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 11 LEAALAANPD--DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHSTT---HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3344444444 55555566666666666666666666665543221 23344444444444444
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.64 E-value=21 Score=37.33 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 143 NAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 143 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
+.|-.+|.+.++++.|+++.+.++...+ .|..-+.-.+-+|.+.|.+..|..-++..++..|..|+.......+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P--~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDP--EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 3344444555555555555555544322 1233344444445555555555555555555555544444433333
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=80.60 E-value=9.5 Score=32.66 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=44.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC---CC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 038852 112 QSLIRAGDLDAASYLARQAVFSRIR---PT-----VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNN 180 (851)
Q Consensus 112 ~~l~~~g~~~~A~~l~~~~~~~~~~---~~-----~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~ 180 (851)
...++.|++.+|.+.+.+....... .. ......+...+...|++++|+..++++++.....-|..+...
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~ 82 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAY 82 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 3457889999997777665543221 11 223334555667889999999999998765433345444433
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.60 E-value=22 Score=30.36 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 227 IGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 227 ~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
.-++.+-++.+...++.|+..+..+.+++|.+.+|+..|.++|+-++.+
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3455666677777777788888888888888888888888888877644
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription] | Back alignment and domain information |
|---|
Probab=80.56 E-value=0.49 Score=57.58 Aligned_cols=11 Identities=55% Similarity=0.350 Sum_probs=4.9
Q ss_pred ccccccccccc
Q 038852 612 QMEGQQHFGSY 622 (851)
Q Consensus 612 ~~~~~~~~~~~ 622 (851)
+|.++|++-|+
T Consensus 1946 q~~~qQ~~~sq 1956 (2220)
T KOG3598|consen 1946 QMRGQQPPMSQ 1956 (2220)
T ss_pred HHhccCccccc
Confidence 34455544443
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=80.51 E-value=45 Score=30.32 Aligned_cols=43 Identities=9% Similarity=0.213 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 413 EAEKLLREISTKSLSPD-VTTFRTLIDAYLKVERIDDALELFNR 455 (851)
Q Consensus 413 ~A~~l~~~m~~~g~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~ 455 (851)
++.++|..|...|+-.. +..|...+..+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55555555554443322 33444444555555555555555543
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=80.30 E-value=70 Score=32.74 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=17.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGF 221 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~ 221 (851)
++..+...|+++++++++.++.+.+ ...+..-.+.|..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~-~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMN-PELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTS-S---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccC-CCCCHHHHHHHHHHH
Confidence 4444555555555555555555543 223333334343333
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 7e-19
Identities = 57/371 (15%), Positives = 128/371 (34%), Gaps = 58/371 (15%)
Query: 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAK-RYDDAVALFKYF 165
L + LD +++ + A+ + P + + + +Y+ + + +A+
Sbjct: 36 LLLLSSIHFQCRRLDRSAHFSTLAI--KQNPLLAEAYSNLGNVYKERGQLQEAIE----H 89
Query: 166 FDQA-DIVPNIV-SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFV- 222
+ A + P+ + Y NL G ++ + + ++ P G +
Sbjct: 90 YRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP----DLYCVRSDLGNLL 145
Query: 223 -DAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDE-LKQRCLVYD 280
GR+ EA + Q ++ ++NL F G + A F++ +
Sbjct: 146 KALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVT------- 197
Query: 281 GVVNATFMEWWFN-------QGKDKEAMQSY-KSL-MERNFRMTPATCNTLLEVLLKHEK 331
++ F++ + N A+ +Y ++L + N L V +
Sbjct: 198 --LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH---AVVHGNLACVYYEQGL 252
Query: 332 KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA-GTHPKSKP 390
+ A + + ++ +Q D + + N + G +EA + + A P
Sbjct: 253 IDLAIDTYRRAIE------LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT--- 303
Query: 391 FAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLS--PD-VTTFRTLIDAYLKVERID 447
NN+ E +EEA +L R K+L P+ L + ++
Sbjct: 304 ---HADSLNNLANIKREQGNIEEAVRLYR----KALEVFPEFAAAHSNLASVLQQQGKLQ 356
Query: 448 DALELFNRMVE 458
+AL + +
Sbjct: 357 EALMHYKEAIR 367
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 1e-13
Identities = 61/370 (16%), Positives = 127/370 (34%), Gaps = 80/370 (21%)
Query: 29 LALNPNSPNPNLNPISARGYAFSSA---EEAAAERRRRKRRLRIEPPLHAIRPNPTQPPP 85
+ NP N G + +EA R A+R P
Sbjct: 60 IKQNPLLAEAYSN----LGNVYKERGQLQEAIEHYRH------------ALRLKP----- 98
Query: 86 RDPNAPRLPDTTSALVGPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVF-TCNA 144
+ N +L+ AGD++ A A+ + P ++ +
Sbjct: 99 DFIDG----------------YINLAAALVAAGDMEGAVQAYVSAL--QYNPDLYCVRSD 140
Query: 145 IIAAMYRAKRYDDAVALFKYFFDQA-DIVPNIV-SYNNLINTYCDEGKVDEGMNVFRRII 202
+ + R ++A A + +A + PN +++NL + +G++ ++ F + +
Sbjct: 141 LGNLLKALGRLEEAKACY----LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 196
Query: 203 ETAPVGPSSNTYRHLTKGFV--DAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG 260
P + ++ G V +A AV LS ++V+ NL + G
Sbjct: 197 TLDP----NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQG 251
Query: 261 NLEKANELFDE-LKQRCLVYDGVVNATFMEWWFN-------QGKDKEAMQSYKSLMERNF 312
++ A + + ++ + F + + N +G EA Y + +
Sbjct: 252 LIDLAIDTYRRAIE---------LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Query: 313 RMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKF 372
+ N L + + EEA L+ + L+ P + + + + + GK
Sbjct: 303 THADSLNN-LANIKREQGNIEEAVRLYRKALEVF--PE----FAAAHSNLASVLQQQGKL 355
Query: 373 SEAIETFKKA 382
EA+ +K+A
Sbjct: 356 QEALMHYKEA 365
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 8e-13
Identities = 52/293 (17%), Positives = 104/293 (35%), Gaps = 41/293 (13%)
Query: 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFV--DAGRIGEAVDLLR 235
L + G + ++ P NT L + R+ +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEP----DNTGVLLLLSSIHFQCRRLDRSAHFST 57
Query: 236 DMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN-- 293
+ + + Y+NL + + G L++A E + + + F++ + N
Sbjct: 58 LAIKQNPL-LAEAYSNLGNVYKERGQLQEAIEHYRHALR--------LKPDFIDGYINLA 108
Query: 294 -----QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQP 348
G + A+Q+Y S ++ N + + L +L + EEA+A + + ++
Sbjct: 109 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSD-LGNLLKALGRLEEAKACYLKAIETQ-- 165
Query: 349 PNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA-GTHPKSKPFAMDVAGYNNIIARYCE 407
PN + ++ + G+ AI F+KA P + Y N+ E
Sbjct: 166 PN----FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN------FLDAYINLGNVLKE 215
Query: 408 NEMLEEAEKLLRE-ISTKSLSPD-VTTFRTLIDAYLKVERIDDALELFNRMVE 458
+ + A + SLSP+ L Y + ID A++ + R +E
Sbjct: 216 ARIFDRAVAAYLRAL---SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 8e-16
Identities = 50/381 (13%), Positives = 118/381 (30%), Gaps = 81/381 (21%)
Query: 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRA-KRYDDAVALFKYF 165
+ L+ AG L A AV P + A ++ A + A+
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAV--DGDPDNYIAYYRRATVFLAMGKSKAALP----D 59
Query: 166 FDQA-DIVPNIVS-YNNLINTYCDEGKVDEGMNVFRRIIETAP-----------VGPSSN 212
+ + + + + +GK+DE + F++++++ P + +
Sbjct: 60 LTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE 119
Query: 213 TYRHLTKGFV--DAGRIGEAVDLLRDMLSRQLGADSL-VYNNLISGFLNLGNLEKANELF 269
R ++ D A+ L +L ++ + F+ G KA
Sbjct: 120 MQRLRSQALDAFDGADYTAAITFLDKIL--EVCVWDAELRELRAECFIKEGEPRKAISDL 177
Query: 270 DELKQRCLVYDGVVNATFMEWWFN-------QGKDKEAMQSYKSLMERNFRMTPATCNTL 322
+ + + E ++ G + ++ + ++ + +
Sbjct: 178 KAASK--------LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH-Y 228
Query: 323 LEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382
+V ++ E A+ L G++++A ++
Sbjct: 229 KQVKKLNKLIESAEELIRD----------------------------GRYTDATSKYESV 260
Query: 383 GTHPKSKPFAMDVAGYNNIIARYCENEMLEEA----EKLLREISTKSLSPD-VTTFRTLI 437
+ V I + ++E EA ++L+ + PD V +
Sbjct: 261 MKT-EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ------MEPDNVNALKDRA 313
Query: 438 DAYLKVERIDDALELFNRMVE 458
+AYL E D+A++ + E
Sbjct: 314 EAYLIEEMYDEAIQDYEAAQE 334
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 6e-09
Identities = 34/310 (10%), Positives = 90/310 (29%), Gaps = 42/310 (13%)
Query: 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDL 233
++ + L G++ + ++ F ++ P + R F+ G+ A+
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATV--FLAMGKSKAALPD 59
Query: 234 LRDMLSRQLGAD-SLVYNNLISGFLNLGNLEKANELFD--------------ELKQRCLV 278
L ++ L D + L G L++A + F Q
Sbjct: 60 LTKVI--ALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117
Query: 279 YDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQAL 338
+ + F+ A+ ++E E +K + +A +
Sbjct: 118 DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL-RAECFIKEGEPRKAISD 176
Query: 339 FEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA----GTHPKSKPF--- 391
+ +++ N++ F + ++ G ++ ++ H +
Sbjct: 177 LKAAS------KLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ 230
Query: 392 AMDVAGYNNIIARYCENEMLEEAEKLLRE-ISTKSLSPDVTTFRTLI-----DAYLKVER 445
+ + +A + T+ P V + + K E+
Sbjct: 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICHCFSKDEK 287
Query: 446 IDDALELFNR 455
+A+ + +
Sbjct: 288 PVEAIRICSE 297
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 36/232 (15%), Positives = 62/232 (26%), Gaps = 39/232 (16%)
Query: 244 ADSLVYNNLISGFLNLGNLEKANELFDE-LKQRCLVYDGVVNATFMEWWFN-------QG 295
AD + L L G L A F + + ++ G
Sbjct: 1 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG---------DPDNYIAYYRRATVFLAMG 51
Query: 296 KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVN 355
K K A+ ++ T A +LLK K +EA+ F+++L P +
Sbjct: 52 KSKAALPDLTKVIALKMDFTAARLQ-RGHLLLKQGKLDEAEDDFKKVLK-SNPSEQEEKE 109
Query: 356 ----------SDTFNIMVNECFKHGKFSEAIETFKKA-GTHPKSKPFAMDVAGYNNIIAR 404
+ F ++ AI K
Sbjct: 110 AESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD------AELRELRAEC 163
Query: 405 YCENEMLEEAEKLLREISTKSLSPDVTTFRTLI-DAYLKVERIDDALELFNR 455
+ + +A L+ S L D T I Y ++ + +L
Sbjct: 164 FIKEGEPRKAISDLKAAS--KLKSDNTEAFYKISTLYYQLGDHELSLSEVRE 213
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.4 bits (192), Expect = 6e-15
Identities = 72/524 (13%), Positives = 147/524 (28%), Gaps = 148/524 (28%)
Query: 12 NRHHHRLSFSL-LHQFHNLALNPNSPNPNLNPI-----------SARGYAFSSAE--EAA 57
+ HHH + F HQ+ + + + S E
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSV----FEDAFVDNFDCKDVQDMPKS-ILSKEEIDHII 55
Query: 58 AERRRRKRRLRIEPPL-------------HAIRPN------PTQPPPRDPNAPRLPDTTS 98
+ LR+ L +R N P + R P+ T
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM-----TR 110
Query: 99 ALVGPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDA 158
+ R L+N Q A+ V SR++P + A+ +
Sbjct: 111 MYIEQRDRLYNDNQV------------FAKYNV-SRLQPY----LKLRQALLELRP---- 149
Query: 159 VALFKYFFDQADIVPNIVSY-------NNLINTYCDEGKVDEGM--NVF-----RRIIET 204
N++ + C KV M +F
Sbjct: 150 -------------AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 205 APVGPSSNTYRHLTKGFVDAG--------RIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256
+ + + RI LR +L + + L L+
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL----LV--- 249
Query: 257 LNLGNLEKANEL--FDELKQRCLV---YDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN 311
L N++ A F+ L + L+ + V + A ++ SL +
Sbjct: 250 --LLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFL-----------SAATTTHISLDHHS 295
Query: 312 FRMTPATCNTLLEVLLKHEKK---EEAQ-------ALFEQMLDNH--QPPNIQAVNSDTF 359
+TP +LL L + E ++ + + + N + VN D
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 360 NIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLR 419
++ + +E + F + P S + ++ + + + ++
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL------LSLIWFDVIKSDVMVVVN 409
Query: 420 EISTKSL---SPDVTTFRTLIDAYLKV-ERIDDALELFNRMVES 459
++ SL P +T + YL++ ++++ L +V+
Sbjct: 410 KLHKYSLVEKQPKESTIS-IPSIYLELKVKLENEYALHRSIVDH 452
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 2e-10
Identities = 66/473 (13%), Positives = 122/473 (25%), Gaps = 160/473 (33%)
Query: 60 RRRRKRRLRIEPP---LHAIRPNPTQPPPRDPNAPRLPDTTSALVGPRLNLHNRVQSLIR 116
+ +E L+ I PN T N + A + L L+
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL- 248
Query: 117 AGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIV 176
L F+ +C ++ R V D +
Sbjct: 249 --VLLNVQNAKAWNAFN------LSCKILLTT-----R-FKQVT---------DFLSAAT 285
Query: 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAP---------VGPSSNTYRHLTKGFVDAGRI 227
+ + ++ + DE ++ + ++ P P R L I
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-----RRL-------SII 333
Query: 228 GEAVDLLRDMLSR-----QLGADSLVYNNLISGFLNLGNLEKAN--ELFDELKQRCLVYD 280
E +RD L+ + D L +I LN LE A ++FD L
Sbjct: 334 AE---SIRDGLATWDNWKHVNCDKL--TTIIESSLN--VLEPAEYRKMFDRL-------- 378
Query: 281 GVVNATFME------------WWFNQGKDKEAMQ-----SYKSLMERNFRMTPATCNTLL 323
+ F W+ + M SL+E+ + + + ++
Sbjct: 379 ----SVFPPSAHIPTILLSLIWF--DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 324 EVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAG 383
L K E AL ++D++ P + F
Sbjct: 433 --LELKVKLENEYALHRSIVDHYNIP---------------KTFDSDDLI---------- 465
Query: 384 THPKSKPFAMDVAGYNNIIARY-------CEN-EMLEEAEKL---LREISTK-------- 424
P +D Y + E+ E + + R + K
Sbjct: 466 ------PPYLD--QY---FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 425 ----SLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFN 473
S+ + + Y I D + R+V + L + +
Sbjct: 515 NASGSILNTLQQLKF----YKP--YICDNDPKYERLVNAILDFLPKIEENLIC 561
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 35/285 (12%), Positives = 88/285 (30%), Gaps = 34/285 (11%)
Query: 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPT-VFTCNAI-IAAMYRAKRYDDAVALFKY 164
L + +L+ + YL+ + V + P+ + A+ + + + A
Sbjct: 59 LPVHIGTLVELNKANELFYLSHKLV--DLYPSNPVSWFAVGCYYLMVGHKNEHARR---- 112
Query: 165 FFDQA-DIVPNIV-SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYR-HLTKG- 220
+ +A + ++ +++ E + D+ M + + + L G
Sbjct: 113 YLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-----GCHLPMLYIGL 167
Query: 221 -FVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDE-LKQRCLV 278
+ A LS D V + + G + A + F + L++ +
Sbjct: 168 EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI 226
Query: 279 YDGVVNATFMEWWFN-------QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEK 331
+ V + N K EA+ ++ + + + +
Sbjct: 227 GNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSA-IGYIHSLMGN 285
Query: 332 KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAI 376
E A F L ++ ++ + ++ + + SEA
Sbjct: 286 FENAVDYFHTALG------LRRDDTFSVTMLGHCIEMYIGDSEAY 324
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 37/296 (12%), Positives = 86/296 (29%), Gaps = 43/296 (14%)
Query: 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-----SNTYRHLTKGFVDAGRIGEAVD 232
+L + + ++E P S T L + E
Sbjct: 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVEL-------NKANELFY 77
Query: 233 LLRDMLSRQLGADSLVYNNLISGFLNLGNL-EKANELFDELKQRCLVYDGVVNATFMEWW 291
L ++ + + + + +L +G+ E A + + T+ W
Sbjct: 78 LSHKLVDLYPS-NPVSWFAVGCYYLMVGHKNEHARRYL----SKAT----TLEKTYGPAW 128
Query: 292 FN-------QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLD 344
+ + +AM +Y + + + + A+ F Q L
Sbjct: 129 IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY-IGLEYGLTNNSKLAERFFSQALS 187
Query: 345 NHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA----GTHPKSKPFAMDVAGYNN 400
I + + + F++G++ A + F A NN
Sbjct: 188 ------IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241
Query: 401 IIARYCENEMLEEAEKLLREISTKSLSPD-VTTFRTLIDAYLKVERIDDALELFNR 455
+ + + EA R+ L P +T+ + + + ++A++ F+
Sbjct: 242 LGHVCRKLKKYAEALDYHRQ--ALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 5e-11
Identities = 43/362 (11%), Positives = 95/362 (26%), Gaps = 72/362 (19%)
Query: 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTC-NAIIAAMYRAKRYDDAVALFKYF 165
+ + + D L + P +C I + + ++ L
Sbjct: 25 VVSLAERHYYNCDFKMCYKLTSVVM--EKDPFHASCLPVHIGTLVELNKANELFYLS--- 79
Query: 166 FDQA-DIVPN-IVSYNNLINTYCDEGKVDEG-MNVFRRIIETAPVGPSSNTYRHLTKGFV 222
+ D+ P+ VS+ + Y G +E + L K +
Sbjct: 80 -HKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATT-------------LEKTYG 125
Query: 223 DAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFD---ELKQRC-LV 278
A + F ++A + +L + C L
Sbjct: 126 PA------------------------WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLP 161
Query: 279 YDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQAL 338
+ + K A + + + + V ++ + + A+
Sbjct: 162 MLYIGLE-----YGLTNNSKLAERFFSQALSIAPEDPFVMHE-VGVVAFQNGEWKTAEKW 215
Query: 339 FEQMLD---NHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA-GTHPKSKPFAMD 394
F L+ N + + C K K++EA++ ++A P+ +
Sbjct: 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ------N 269
Query: 395 VAGYNNIIARYCENEMLEEAEKLLRE-ISTKSLSPD-VTTFRTLIDAYLKVERIDDALEL 452
+ Y+ I + E A + L D + L +A
Sbjct: 270 ASTYSAIGYIHSLMGNFENAVDYFHTAL---GLRRDDTFSVTMLGHCIEMYIGDSEAYIG 326
Query: 453 FN 454
+
Sbjct: 327 AD 328
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 30/259 (11%), Positives = 66/259 (25%), Gaps = 51/259 (19%)
Query: 223 DAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGV 282
L ++ + + I + L + L +L
Sbjct: 34 YNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVD-------- 84
Query: 283 VNATFMEWWFNQG--------KDKEAMQSYK--SLMERNFRMTPATCNTLLEVLLKHEKK 332
+ + WF G K++ A + + +E+ + E +
Sbjct: 85 LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY----GPAWIAYGHSFAVESE 140
Query: 333 -EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVN---ECFKHGKFSEAIETFKKA-GTHPK 387
++A A + + M+ E A F +A P+
Sbjct: 141 HDQAMAAYFTAA---------QLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE 191
Query: 388 SKPFAMDVAGYNNIIARYCENEMLEEAEKLLR-------EISTKSLSPD-VTTFRTLIDA 439
D + + +N + AEK I + L
Sbjct: 192 ------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245
Query: 440 YLKVERIDDALELFNRMVE 458
K+++ +AL+ + +
Sbjct: 246 CRKLKKYAEALDYHRQALV 264
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 29/243 (11%), Positives = 62/243 (25%), Gaps = 43/243 (17%)
Query: 224 AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVV 283
I E+VD L++ L V +L + + +L + +
Sbjct: 8 ETVIPESVDGLQENLD--------VVVSLAERHYYNCDFKMCYKLTSVVME--------K 51
Query: 284 NATFMEWWFN-------QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLL-KHEKKEEA 335
+ K E L++ P + + L K E A
Sbjct: 52 DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHA 110
Query: 336 QALFEQ--MLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAM 393
+ + L+ + + + +A+ + A ++
Sbjct: 111 RRYLSKATTLE----KT----YGPAWIAYGHSFAVESEHDQAMAAYFTA-----AQLMKG 157
Query: 394 DVAGYNNIIARYCENEMLEEAEKLLREISTKSLSP-DVTTFRTLIDAYLKVERIDDALEL 452
I Y + AE+ + S++P D + + A +
Sbjct: 158 CHLPMLYIGLEYGLTNNSKLAERFFSQ--ALSIAPEDPFVMHEVGVVAFQNGEWKTAEKW 215
Query: 453 FNR 455
F
Sbjct: 216 FLD 218
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 7e-14
Identities = 52/378 (13%), Positives = 118/378 (31%), Gaps = 79/378 (20%)
Query: 109 NRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRA-KRYDDAVALFKYFFD 167
+ L+ AG L A AV P + A ++ A + A+
Sbjct: 31 ELGKKLLAAGQLADALSQFHAAV--DGDPDNYIAYYRRATVFLAMGKSKAALP----DLT 84
Query: 168 QA-DIVPNIVS-YNNLINTYCDEGKVDEGMNVFRRIIETAP-----------VGPSSNTY 214
+ + + + + +GK+DE + F++++++ P + S
Sbjct: 85 KVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ 144
Query: 215 RHLTKGFV--DAGRIGEAVDLLRDMLSRQLGADSL-VYNNLISGFLNLGNLEKANELFDE 271
R ++ +G A+ L +L ++ + F+ G KA
Sbjct: 145 RLRSQALNAFGSGDYTAAIAFLDKIL--EVCVWDAELRELRAECFIKEGEPRKAISDLKA 202
Query: 272 LKQRCLVYDGVVNATFMEWWFN-------QGKDKEAMQSYKSLMERNFRMTP--ATCNTL 322
+ + E ++ G + ++ + ++ + C
Sbjct: 203 ASK--------LKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD----QDHKRCFAH 250
Query: 323 LEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382
+ + K K E+ E + G++++A ++
Sbjct: 251 YKQVKKLNKLIES---------------------------AEELIRDGRYTDATSKYESV 283
Query: 383 GTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLRE-ISTKSLSPD-VTTFRTLIDAY 440
S + I + ++E EA ++ E + + PD V + +AY
Sbjct: 284 MKTEPSIAEYTVRS-KERICHCFSKDEKPVEAIRVCSEVL---QMEPDNVNALKDRAEAY 339
Query: 441 LKVERIDDALELFNRMVE 458
L E D+A++ + E
Sbjct: 340 LIEEMYDEAIQDYETAQE 357
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 35/334 (10%), Positives = 99/334 (29%), Gaps = 51/334 (15%)
Query: 148 AMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPV 207
+ Y ++A + + L G++ + ++ F ++ P
Sbjct: 12 DLGTENLYFQSMADVE-------------KHLELGKKLLAAGQLADALSQFHAAVDGDPD 58
Query: 208 GPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANE 267
+ R F+ G+ A+ L ++ + + L G L++A +
Sbjct: 59 NYIAYYRRATV--FLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAED 115
Query: 268 LFDELKQRC-------LVYDGVVNATFMEWWFNQGKD-------KEAMQSYKSLMERNFR 313
F ++ + ++ + M+ +Q + A+ ++E
Sbjct: 116 DFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW 175
Query: 314 MTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFS 373
E +K + +A + + ++ N++ F + ++ G
Sbjct: 176 DAELREL-RAECFIKEGEPRKAISDLKAAS------KLKNDNTEAFYKISTLYYQLGDHE 228
Query: 374 EAIETFKKA----GTHPKSKPFAMDVAGYNNIIAR---YCENEMLEEAEKLLREISTKSL 426
++ ++ H + V N +I + +A +
Sbjct: 229 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM--KT 286
Query: 427 SPDVTTFRTLI-----DAYLKVERIDDALELFNR 455
P + + + K E+ +A+ + +
Sbjct: 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 20/224 (8%), Positives = 58/224 (25%), Gaps = 38/224 (16%)
Query: 249 YNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLM 308
+++ ++ ++ + G+ +A+ + + +
Sbjct: 6 HHSSGVDLGTENLYFQSMADVEKHLELGKKL------------LAAGQLADALSQFHAAV 53
Query: 309 ERNFRMTPATCNTLL---EVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNE 365
+ + P V L K + A +++ ++ + +
Sbjct: 54 DGD----PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ------LKMDFTAARLQRGHL 103
Query: 366 CFKHGKFSEAIETFKKAGTHPKSKPFAMDVAG----------YNNIIARYCENEMLEEAE 415
K GK EA + FKK S+ + + + A
Sbjct: 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163
Query: 416 KLLRE-ISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVE 458
L + + ++ + ++K A+ +
Sbjct: 164 AFLDKILEVCVWDAEL--RELRAECFIKEGEPRKAISDLKAASK 205
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 17/185 (9%), Positives = 56/185 (30%), Gaps = 24/185 (12%)
Query: 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPT-VFTCNAIIAAMYRAKRYDDAVALFKYF 165
R + I+ G+ A + A +++ I Y+ ++ +++
Sbjct: 180 RELRAECFIKEGEPRKAISDLKAAS--KLKNDNTEAFYKISTLYYQLGDHELSLS----E 233
Query: 166 FDQA--------------DIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSS 211
+ V + +G+ + + + +++T P
Sbjct: 234 VRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEY 293
Query: 212 NTYRHLTKG--FVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELF 269
F + EA+ + ++L + + + +L ++A + +
Sbjct: 294 TVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDY 352
Query: 270 DELKQ 274
+ ++
Sbjct: 353 ETAQE 357
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 73.8 bits (181), Expect = 8e-14
Identities = 42/327 (12%), Positives = 93/327 (28%), Gaps = 62/327 (18%)
Query: 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSN-------TYRHLTKGFVDAGR 226
N L +G+ + + R+ E + T+ + + GR
Sbjct: 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGR 109
Query: 227 IGEA-------VDLLRDMLSRQLGADSLVYNNLISGFLNLG--NLEKANELFDE-LKQRC 276
+ + + S + L G E+A F++ L+
Sbjct: 110 LSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE--- 166
Query: 277 LVYDGVVNATFMEWWFN----------QGKDKEAMQSYKSLMERNFRMTPATCN---TLL 323
E+ + A+ + + N L
Sbjct: 167 ------KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH 220
Query: 324 EVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA- 382
++ + E++ E + L E+ L+ P +D + + +AIE KKA
Sbjct: 221 KMREEGEEEGEGEKLVEEALEKA--PG----VTDVLRSAAKFYRRKDEPDKAIELLKKAL 274
Query: 383 -------------GTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPD 429
G ++K F + N + + E++ A L++ + +
Sbjct: 275 EYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK--ADEANDN 332
Query: 430 -VTTFRTLIDAYLKVERIDDALELFNR 455
L + ++ ++A F +
Sbjct: 333 LFRVCSILASLHALADQYEEAEYYFQK 359
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 1e-10
Identities = 44/329 (13%), Positives = 103/329 (31%), Gaps = 53/329 (16%)
Query: 141 TCNAIIAAMYRAKRYDDAVALFK--------YFFDQADIVPNIVSYNNLINTYCDEGKVD 192
CN + + + + A+ + DQA+I ++V++ N Y G++
Sbjct: 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEI-RSLVTWGNYAWVYYHMGRLS 111
Query: 193 EGMNVFRRIIETAP--------VGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA 244
+ ++ P + T+ + A L ++
Sbjct: 112 DVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PK 170
Query: 245 DSLVYNNLISGFLNLGNLEKANELFDELKQ---------RCLVYDGVVNATFMEWWFNQG 295
+ + L L N + D L+Q V + +
Sbjct: 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLAL---KLHKMREEGE 227
Query: 296 KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPN----- 350
++ E + + +E+ +T + + + ++ ++A L ++ L+ PN
Sbjct: 228 EEGEGEKLVEEALEKAPGVTDVLRS-AAKFYRRKDEPDKAIELLKKALEYI--PNNAYLH 284
Query: 351 ----------IQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNN 400
+ V + N M + A+ KKA ++ +
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD---EAND--NLFRVCSI 339
Query: 401 IIARYCENEMLEEAEKLLREISTKSLSPD 429
+ + + + EEAE ++ +K L+P
Sbjct: 340 LASLHALADQYEEAEYYFQKEFSKELTPV 368
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 39/313 (12%), Positives = 93/313 (29%), Gaps = 69/313 (22%)
Query: 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRA-----KRYDDAVA 160
L L A RQA+ R+ P ++A + +
Sbjct: 177 GLAIASYRLDNWPPSQNAIDPLRQAI--RLNPDNQYLKVLLALKLHKMREEGEEEGEGEK 234
Query: 161 LFKYFFDQA-DIVP-NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218
L + +A + P + Y + + D+ + + ++ +E P +N Y H
Sbjct: 235 LVE----EALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP----NNAYLHCQ 286
Query: 219 KGFVDAGRIGEAVDLLRDMLSRQLGADSLV--------------------YNNLISGFLN 258
G ++ + ++L + + + L+ + L S
Sbjct: 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL 346
Query: 259 LGNLEKANELF---------DELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLME 309
E+A F KQ + G + + +A+ +
Sbjct: 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL------YQMKCEDKAIHHFI---- 396
Query: 310 RNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH 369
++ + K + K++ Q + + L + +S+ +++ +
Sbjct: 397 EGVKINQKSRE-------KEKMKDKLQKIAKMRLSKN--GA----DSEALHVLAFLQELN 443
Query: 370 GKFSEAIETFKKA 382
K +A E ++
Sbjct: 444 EKMQQADEDSERG 456
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 2e-13
Identities = 57/332 (17%), Positives = 112/332 (33%), Gaps = 35/332 (10%)
Query: 148 AMYRAKRYDDAVALFKYFFDQA-DIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAP 206
+R K+YDDA+ +++ A ++ + V Y+NL Y G + + + + + +E P
Sbjct: 15 QFFRNKKYDDAIK----YYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP 70
Query: 207 VGPSSNTYRHLTKGFVDAGRIGEAVDLLR---------DMLSRQLGADSLVYNNLISGFL 257
S G+ +A+ L D + +L +
Sbjct: 71 D--YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKE 128
Query: 258 NLGNLEKANELFDELKQRCLV-----YDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF 312
G+++ A EL + + + + T M +F K + +Y E +
Sbjct: 129 KFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADK 188
Query: 313 RMTPATCNTLLEVLLKHEKK----EEAQALFEQMLD-NHQPPNIQAVNSDTFNIMVNECF 367
+ N ++K +A LFE+ LD N++ ++ + + F
Sbjct: 189 ELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248
Query: 368 KHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLRE-ISTKSL 426
A E KKA + P V Y + + E + + S
Sbjct: 249 LKNDPLGAHEDIKKA---IELFP---RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN 302
Query: 427 SPDVTTFRTLIDAYLKVERIDDALELFNRMVE 458
+ V R ++ D A + F++ E
Sbjct: 303 NSSVYYHRGQ--MNFILQNYDQAGKDFDKAKE 332
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 4e-11
Identities = 38/251 (15%), Positives = 69/251 (27%), Gaps = 37/251 (14%)
Query: 148 AMYRAKRYDDAVALFKYFFDQA-DIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAP 206
+ A +A ++ P + SY + D E N F + ++
Sbjct: 246 FKFLKNDPLGAHEDI----KKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS 301
Query: 207 VGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKAN 266
+S+ Y H + +A + Y L +
Sbjct: 302 N--NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCE 358
Query: 267 ELFDELKQRCLVYDGVVNATFMEWWFN-------QGKDKEAMQSYKSLMERNFRMTPATC 319
LF E K++ E + +A++ Y +E ++
Sbjct: 359 TLFSEAKRK--------FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV 410
Query: 320 N--------TLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGK 371
TLL E EA L E+ P + QA + +
Sbjct: 411 GIAPLVGKATLLTRNPTVENFIEATNLLEKASK-LDPRSEQAKIG-----LAQMKLQQED 464
Query: 372 FSEAIETFKKA 382
EAI F+++
Sbjct: 465 IDEAITLFEES 475
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 6e-11
Identities = 46/375 (12%), Positives = 97/375 (25%), Gaps = 41/375 (10%)
Query: 108 HNRVQSLIRAGDLDAASYLARQAVFSRIRPT-VFTCNAIIAAMYRAKRYDDAVALFKYFF 166
N + GDL ++ +A+ ++P +A ++ DA+
Sbjct: 43 SNLSACYVSVGDLKKVVEMSTKAL--ELKPDYSKVLLRRASANEGLGKFADAMFDLSVLS 100
Query: 167 DQADIVP-NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA- 224
D +I K+ E T + K
Sbjct: 101 LNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160
Query: 225 -GRIGEAVDLLRDMLSRQL------GADSLVYNNLISGFLNLGNLEKANELFDELKQR-- 275
+ + + L+ L+ + + +KA+E F + +
Sbjct: 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE 220
Query: 276 ----CLVYDGVVNATFMEWWFN-------QGKDKEAMQSYKSLMERNFRMTPATCNTLLE 324
D + + + A + K +E + +
Sbjct: 221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMAL 278
Query: 325 VLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGT 384
++ E F++ L + + NS + F + +A + F KA
Sbjct: 279 IMADRNDSTEYYNYFDKALK------LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE 332
Query: 385 HPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPD-VTTFRTLIDAYLKV 443
F Y + ++ E L E K P+ +
Sbjct: 333 LDPENIFP-----YIQLACLAYRENKFDDCETLFSE--AKRKFPEAPEVPNFFAEILTDK 385
Query: 444 ERIDDALELFNRMVE 458
D AL+ ++ +E
Sbjct: 386 NDFDKALKQYDLAIE 400
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 1e-10
Identities = 59/447 (13%), Positives = 125/447 (27%), Gaps = 79/447 (17%)
Query: 23 LHQFHNLALNPNSPNPNLNPISARGYAFSSAEEAAAERRRRKRRLRIEPPLHAIRPNPTQ 82
+ L+LN + + ++ P+ R + + + L +
Sbjct: 93 MFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK 152
Query: 83 PPPRDPNAPRLPDTTSALVGPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTC 142
+ + + + P L N + + D ++ R +
Sbjct: 153 DKQENLPSVTSMASFFGIFKPELTFAN----YDESNEADKELMNGLSNLYKRSPESYD-- 206
Query: 143 NAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIV-SYNNLINTYCDEGKVDEGMNVFRRI 201
A + A+ +++ + + + + S + + ++
Sbjct: 207 KADESFTKAARLFEEQLDKNN---EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKA 263
Query: 202 IETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGAD-SLVYNNLISGFLNLG 260
IE + P N+Y ++ D E + L +L ++ S VY + L
Sbjct: 264 IE---LFPRVNSYIYMALIMADRNDSTEYYNYFDKAL--KLDSNNSSVYYHRGQMNFILQ 318
Query: 261 NLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCN 320
N ++A + FD+ K+ + + +
Sbjct: 319 NYDQAGKDFDKAKEL--------DPENIFPYIQLA------------------------- 345
Query: 321 TLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFK 380
+ + K ++ + LF + P + N F +A++ +
Sbjct: 346 ---CLAYRENKFDDCETLFSEAKRKF--PE----APEVPNFFAEILTDKNDFDKALKQYD 396
Query: 381 KA-GTHPKSKPFAMDVAGYNNI---------IARYCENEMLEEAEKLLRE-ISTKSLSPD 429
A K Y I + R E EA LL + L P
Sbjct: 397 LAIELENK------LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK---LDPR 447
Query: 430 -VTTFRTLIDAYLKVERIDDALELFNR 455
L L+ E ID+A+ LF
Sbjct: 448 SEQAKIGLAQMKLQQEDIDEAITLFEE 474
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 36/307 (11%), Positives = 88/307 (28%), Gaps = 41/307 (13%)
Query: 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRD 236
+ + N + K D+ + + +E + Y +L+ +V G + + V++
Sbjct: 8 ALKDKGNQFFRNKKYDDAIKYYNWALE---LKEDPVFYSNLSACYVSVGDLKKVVEMSTK 64
Query: 237 MLSRQLGAD-SLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEW----- 290
L +L D S V S LG A L + +A+
Sbjct: 65 AL--ELKPDYSKVLLRRASANEGLGKFADAMFDLSVL----SLNGDFNDASIEPMLERNL 118
Query: 291 -WFNQGKDKEAMQSYKSLMERNFRMTPATCN------------TLLEVLLKHEKKEEAQA 337
K KE + ++ T + K E A
Sbjct: 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178
Query: 338 LFEQMLDNHQP-----PNIQAVNSDTFNIMVNECFKH-GKFSEAIETFKKAGTHPKSKPF 391
+++ + + N+ + ++++ K F E ++ + +
Sbjct: 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238
Query: 392 AMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALE 451
+ + A + +++ L P V ++ + +
Sbjct: 239 S-----LEHTGIFKFLKNDPLGAHEDIKKAI--ELFPRVNSYIYMALIMADRNDSTEYYN 291
Query: 452 LFNRMVE 458
F++ ++
Sbjct: 292 YFDKALK 298
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 2e-12
Identities = 42/354 (11%), Positives = 94/354 (26%), Gaps = 51/354 (14%)
Query: 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRA-KRYDDAVALFKYF 165
L NR A + + A + A+ + P + I+A Y + + + F
Sbjct: 28 LKNRGNHFFTAKNFNEAIKYYQYAI--ELDPNEPVFYSNISACYISTGDLEKVIE----F 81
Query: 166 FDQA-DIVPNIV-SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD 223
+A +I P+ + + G + M + +S + ++
Sbjct: 82 TTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASI------EPMLE 135
Query: 224 AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVV 283
+A+ +L + LS+ + +L +FD
Sbjct: 136 RNLNKQAMKVLNENLSKD-------EGRGSQVLPSNTSLASFFGIFDS------------ 176
Query: 284 NATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKK-EEAQALFEQM 342
+ A ++R + T ++L K +
Sbjct: 177 -HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVD 235
Query: 343 LDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNII 402
N + F +A +++ P Y +
Sbjct: 236 DPLR--EN----AALALCYTGIFHFLKNNLLDAQVLLQES---INLHP---TPNSYIFLA 283
Query: 403 ARYCENEMLEEAEKLLRE-ISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNR 455
+ E +E K ++ + P + Y ++ +A E F +
Sbjct: 284 LTLADKENSQEFFKFFQKAVDLNPEYPPT--YYHRGQMYFILQDYKNAKEDFQK 335
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 4e-12
Identities = 50/341 (14%), Positives = 104/341 (30%), Gaps = 52/341 (15%)
Query: 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDE--GKVDEGMNV 197
F + ++++ + YD A AL + + N + ++
Sbjct: 174 FDSHLEVSSVNTSSNYDTAYALLSD--ALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA 231
Query: 198 FRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFL 257
++ + + +A LL++ ++ +S Y L
Sbjct: 232 NTVDDPLRE--NAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNS--YIFLALTLA 287
Query: 258 NLGNLEKANELFDE-LKQRCLVYDGVVNATFMEWWFN-------QGKDKEAMQSY-KSL- 307
+ N ++ + F + + +N + +++ K A + + K+
Sbjct: 288 DKENSQEFFKFFQKAVD---------LNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338
Query: 308 MERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECF 367
+ L +L K K E++A F + P +
Sbjct: 339 LNPEN---VYPYIQLACLLYKQGKFTESEAFFNETKLKF--PT----LPEVPTFFAEILT 389
Query: 368 KHGKFSEAIETFKKAGT-HPKSKPF----------AMDVAGYNNIIARYCENEMLEEAEK 416
G F AI+ + A + A +A ++ + E A K
Sbjct: 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449
Query: 417 LLRE-ISTKSLSPD-VTTFRTLIDAYLKVERIDDALELFNR 455
LL + L P L L++E+ID+A+ELF
Sbjct: 450 LLTKACE---LDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 43/258 (16%), Positives = 74/258 (28%), Gaps = 44/258 (17%)
Query: 148 AMYRAKRYDDAVALFKYFFDQA-DIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAP 206
+ DA L ++ ++ P SY L T D+ E F++ ++ P
Sbjct: 252 FHFLKNNLLDAQVLL----QESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP 307
Query: 207 VGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKAN 266
TY H + + A + + S + Y L G ++
Sbjct: 308 --EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESE 364
Query: 267 ELFDELKQRCLVYDGVVNATFMEWWFN-------QGKDKEAMQSYKSLMERN-------- 311
F+E K + T E +G A++ Y
Sbjct: 365 AFFNETKLK--------FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416
Query: 312 -------FRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVN 364
A ++ L EK A L + + P + QA +
Sbjct: 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE-LDPRSEQAKIG-----LAQ 470
Query: 365 ECFKHGKFSEAIETFKKA 382
+ K EAIE F+ +
Sbjct: 471 LKLQMEKIDEAIELFEDS 488
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 40/327 (12%), Positives = 93/327 (28%), Gaps = 52/327 (15%)
Query: 154 RYDDAVALFKYFFDQA-DIVPNIV-----SYNNLINTYCDEGKVDEGMNVFRRIIETAPV 207
+ + Q + P+ N N + +E + ++ IE P
Sbjct: 2 SHMNGEPDI----AQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP- 56
Query: 208 GPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGAD-SLVYNNLISGFLNLGNLEKAN 266
Y +++ ++ G + + ++ L ++ D S S +LGN A
Sbjct: 57 -NEPVFYSNISACYISTGDLEKVIEFTTKAL--EIKPDHSKALLRRASANESLGNFTDAM 113
Query: 267 ELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVL 326
L + A+ + +K+AM+ + ++ +VL
Sbjct: 114 FDLSVLS----LNGDFDGASIEP-MLERNLNKQAMKVLNENLSKDE-------GRGSQVL 161
Query: 327 LKHEKKEEAQALFEQMLDNH----------------QPPNIQAVNSDTFNIMVNECFKH- 369
+ +F+ L+ +D ++ N+
Sbjct: 162 PSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221
Query: 370 -GKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSP 428
+ + ++ A + L +A+ LL+E +L P
Sbjct: 222 TDMYHSLLSANTVDDPLRENAALA-----LCYTGIFHFLKNNLLDAQVLLQESI--NLHP 274
Query: 429 DVTTFRTLIDAYLKVERIDDALELFNR 455
++ L E + + F +
Sbjct: 275 TPNSYIFLALTLADKENSQEFFKFFQK 301
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 3e-10
Identities = 59/383 (15%), Positives = 102/383 (26%), Gaps = 71/383 (18%)
Query: 108 HNRVQSLIRAGDLDAASYLARQAVFSRIRPT-VFTCNAIIAAMYRAKRYDDAVALFKYF- 165
N I GDL+ +A+ I+P +A + DA+
Sbjct: 63 SNISACYISTGDLEKVIEFTTKAL--EIKPDHSKALLRRASANESLGNFTDAMFDLSVLS 120
Query: 166 ----FDQADIVPNI-----------------VSYNNLINTYCDEGKVDEGMNVFRRIIET 204
FD A I P + + +F +E
Sbjct: 121 LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180
Query: 205 APVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEK 264
+ V SSN A LL D L L + L K
Sbjct: 181 SSVNTSSNYD--------------TAYALLSDAL------QRLYSATDEGYLVANDLLTK 220
Query: 265 ANELFDELKQRCLVYDGVVNATFMEWWFN-------QGKDKEAMQSYKSLMERNFRMTPA 317
+ +++ L D + + +A + + + TP
Sbjct: 221 STDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPN 277
Query: 318 TCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIE 377
+ L L E +E F++ +D + T+ F + A E
Sbjct: 278 SYIFLALTLADKENSQEFFKFFQKAVD------LNPEYPPTYYHRGQMYFILQDYKNAKE 331
Query: 378 TFKKA-GTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPD-VTTFRT 435
F+KA +P+ +V Y + + E+E E TK P
Sbjct: 332 DFQKAQSLNPE------NVYPYIQLACLLYKQGKFTESEAFFNE--TKLKFPTLPEVPTF 383
Query: 436 LIDAYLKVERIDDALELFNRMVE 458
+ D A++ ++
Sbjct: 384 FAEILTDRGDFDTAIKQYDIAKR 406
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 38/282 (13%), Positives = 71/282 (25%), Gaps = 46/282 (16%)
Query: 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRA-KRYDDAVALFKYF 165
+L + ++AV + P MY + Y +A
Sbjct: 279 YIFLALTLADKENSQEFFKFFQKAV--DLNPEYPPTYYHRGQMYFILQDYKNAKE----D 332
Query: 166 FDQA-DIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD 223
F +A + P + Y L +GK E F P + D
Sbjct: 333 FQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT--LPEVPTFFAEILTD 390
Query: 224 AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVV 283
G A+ + ++ + L + +
Sbjct: 391 RGDFDTAIKQYDIAKRLEE-VQEKIHVGIGPLIGKATILARQSSQDPTQL---------- 439
Query: 284 NATFMEWWFNQGKDKEAMQSYKSLMERNFRMTP---ATCNTLLEVLLKHEKKEEAQALFE 340
++ K A++ E + P L ++ L+ EK +EA LFE
Sbjct: 440 ---------DEEKFNAAIKLLTKACELD----PRSEQAKIGLAQLKLQMEKIDEAIELFE 486
Query: 341 QMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382
+ + + TF K + +
Sbjct: 487 DSAI-LARTMDEKLQATTFAEA-------AKIQKRLRADPII 520
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 2e-12
Identities = 39/330 (11%), Positives = 95/330 (28%), Gaps = 38/330 (11%)
Query: 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFR 199
F + + + + D+ Y + + +T + + + +
Sbjct: 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITT 329
Query: 200 RIIETAPVGPSSNTYRHLTKG--FVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFL 257
+I+E P N + ++G + + D++ R ++ + + +L
Sbjct: 330 KILEIDP----YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYL 384
Query: 258 NLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN-------QGKDKEAMQSYKSLMER 310
+ + +A F + D F W +G+ +A+ +Y +
Sbjct: 385 CVNKISEARRYF----SKSSTMD----PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436
Query: 311 NFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHG 370
L ++ A + + + N + F
Sbjct: 437 FQGTHLPYLF-LGMQHMQLGNILLANEYLQSSY------ALFQYDPLLLNELGVVAFNKS 489
Query: 371 KFSEAIETFKKA----GTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSL 426
AI F+ A ++ A + N+ Y + +M + A L + L
Sbjct: 490 DMQTAINHFQNALLLVKKTQSNEK--PWAATWANLGHAYRKLKMYDAAIDALNQ--GLLL 545
Query: 427 SPD-VTTFRTLIDAYLKVERIDDALELFNR 455
S + + YL + A+ +
Sbjct: 546 STNDANVHTAIALVYLHKKIPGLAITHLHE 575
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 4e-12
Identities = 41/293 (13%), Positives = 83/293 (28%), Gaps = 41/293 (13%)
Query: 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTC-NAIIAAMYRAKRYDDAVALFKYF 165
L + +L + + + I P +A+++ + + +
Sbjct: 308 LLCKADTLFVRSRFIDVLAITTKIL--EIDPYNLDVYPLHLASLHESGEKNKLYLIS--- 362
Query: 166 FDQA-DIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKG--F 221
+ D P V++ + Y K+ E F + P + F
Sbjct: 363 -NDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP----QFGPAWIGFAHSF 417
Query: 222 VDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRC----L 277
G +A+ G L Y L + LGN+ ANE L
Sbjct: 418 AIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL 476
Query: 278 VYD--GVVNATFMEWWFNQGKDKEAMQSYK---SLMERNFRMTPATCNTLL---EVLLKH 329
+ + GVV FN+ + A+ ++ L+++ T K
Sbjct: 477 LLNELGVV-------AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529
Query: 330 EKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382
+ + A Q L + +++ + AI ++
Sbjct: 530 KMYDAAIDALNQGLL------LSTNDANVHTAIALVYLHKKIPGLAITHLHES 576
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 5e-10
Identities = 54/425 (12%), Positives = 118/425 (27%), Gaps = 60/425 (14%)
Query: 60 RRRRKRRLRIEPPLHAIRPNPTQPPPRDPNAPRLPDTTSALVGPRLNLHNRVQSLIRAGD 119
R + R++ P H P + + ++ + + L
Sbjct: 5 RTQTDSRMQSTPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANNTS 64
Query: 120 LDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQA-DIVPNIVSY 178
D + R A + ++Y A + ++ DI N
Sbjct: 65 TDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAA----FVGEKVLDITGNPNDA 120
Query: 179 NNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT-KGFVDAGRIGEAVDLLRDM 237
L YC G + + S+ R+L V A++LL +
Sbjct: 121 FWLAQVYCCTGDYARAKCLLTKEDLYNR----SSACRYLAAFCLVKLYDWQGALNLLGET 176
Query: 238 LS---------------RQLGADSLVYNNLISGFLNLGNLEKANELFDE-LKQRCLVYDG 281
+ ++ + + NL N ++A E + E L
Sbjct: 177 NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM-------- 228
Query: 282 VVNATFMEWWFNQGK----------DKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEK 331
V+A E + D +Y + + + + L ++
Sbjct: 229 -VDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE 287
Query: 332 KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPF 391
A+ + N + + + F +F + + K + P+
Sbjct: 288 LRRAEDYLSSI--NGLEKSSDLLLC-----KADTLFVRSRFIDVLAITTKI---LEIDPY 337
Query: 392 AMDVAGYNNIIARYCENEMLEEAEKLLRE-ISTKSLSPDVTTFRTLIDAYLKVERIDDAL 450
++ Y +A E+ + + + + T+ + YL V +I +A
Sbjct: 338 --NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAV--TWLAVGIYYLCVNKISEAR 393
Query: 451 ELFNR 455
F++
Sbjct: 394 RYFSK 398
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 7e-10
Identities = 44/372 (11%), Positives = 108/372 (29%), Gaps = 50/372 (13%)
Query: 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTC-NAIIAAMYRAKRYDDAVALFKYF 165
+ R Q + D A ++A+ + + + +++ + + L +
Sbjct: 203 CYLRGQVYTNLSNFDRAKECYKEAL--MVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNY 260
Query: 166 FDQADIVPNIVS--YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD 223
+ + Y +N E ++ + + I SS+
Sbjct: 261 STYSKEDAAFLRSLYMLKLNKTSHEDELRRAED-YLSSINGLE--KSSDLLLCKADTLFV 317
Query: 224 AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDEL----KQRCLVY 279
R + + + +L + VY ++ G K + ++L ++ + +
Sbjct: 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW 376
Query: 280 DGVVNATFMEWWFNQGKDKEAMQSYK--SLMERNFRMTPATCNTLLEVLLKHEKK-EEAQ 336
V + K EA + + S M+ F E + ++A
Sbjct: 377 LAVGIY-----YLCVNKISEARRYFSKSSTMDPQF----GPAWIGFAHSFAIEGEHDQAI 427
Query: 337 ALFEQMLDNHQPPNIQAVNSDTFNIMVN---ECFKHGKFSEAIETFKKA-GTHPKSKPFA 392
+ + + T + + + G A E + +
Sbjct: 428 SAYTTAA---------RLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY----- 473
Query: 393 MDVAGYNNIIARYCENEMLEEAEKLLR---EISTKSLSPDVTTFRTLI---DAYLKVERI 446
D N + ++ A + + K+ S + T AY K++
Sbjct: 474 -DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532
Query: 447 DDALELFNRMVE 458
D A++ N+ +
Sbjct: 533 DAAIDALNQGLL 544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 7e-12
Identities = 42/262 (16%), Positives = 73/262 (27%), Gaps = 31/262 (11%)
Query: 224 AGRIGEAVDLLR---DMLSRQLGADS-------LVYNNLISGFLNLGNLEKANELFD--- 270
A +I EA + + L Y F N LE+A + +
Sbjct: 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEA 63
Query: 271 ----ELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKS----LMERNFRMTPATCNTL 322
+ A M + + EA+Q + +E T A
Sbjct: 64 EAHANNRSLFHAAKAFEQAGMM--LKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121
Query: 323 LEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382
L++ +A L++Q + ++ + KF EA + +K
Sbjct: 122 AGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKE 181
Query: 383 GTHPKSKPFAMDVAG-YNNIIARYCENEMLEEAEKLLR---EISTKSLSPDVTTFRTLID 438
+ K + A+K +R I S S D L+
Sbjct: 182 KSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQ 241
Query: 439 AYLK--VERIDDALE--LFNRM 456
AY + E++ L M
Sbjct: 242 AYDEQDEEQLLRVCRSPLVTYM 263
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 4e-09
Identities = 31/298 (10%), Positives = 90/298 (30%), Gaps = 49/298 (16%)
Query: 152 AKRYDDAVALFK---------YFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRII 202
A++ +A + + D Y + + ++++ + + +
Sbjct: 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEA 63
Query: 203 ETAP----VGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSL----VYNNLIS 254
E + ++ + D R+ EAV + + + + +
Sbjct: 64 EAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123
Query: 255 GFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRM 314
+ +L KA L+ Q+ + N+ + ++A +
Sbjct: 124 KLMEPLDLSKAVHLY----QQAA-----------AVFENEERLRQAAELI---------- 158
Query: 315 TPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSE 374
+L++ +K +EA A ++ ++ V +
Sbjct: 159 -----GKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213
Query: 375 AIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTT 432
A + +++ + P + D A +++ Y + + E+ ++ R + D
Sbjct: 214 AQKCVRESYSIP-GFSGSEDCAALEDLLQAY-DEQDEEQLLRVCRSPLVTYMDNDYAK 269
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 2e-11
Identities = 50/345 (14%), Positives = 94/345 (27%), Gaps = 79/345 (22%)
Query: 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPT-VFTCNAIIAAMYRAKRYDDAVALFKY 164
++ GDL A+ P + + A+
Sbjct: 67 GAFEEGLKRLKEGDLPVTILFMEAAI--LQDPGDAEAWQFLGITQAENENEQAAIV---- 120
Query: 165 FFDQA-DIVPNIV-SYNNLINTYCDEGKVDEGMNVFRRIIETAP--------VGPSSNTY 214
+ ++ PN + + L +Y + + + I+ P S
Sbjct: 121 ALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLT 180
Query: 215 RHLTKGFVDAGRIGEAVDLLRDMLSRQLG-ADSLVYNNLISGFLNLGNLEKANELFDE-L 272
R ++K VD+ + +L + + D + L F G +A + F+ L
Sbjct: 181 RRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAAL 240
Query: 273 KQRCLVYDGVVNATFMEWWFN-------QGKDKEAMQSYKSLMERNFRMTPATCNTLLEV 325
V W + +EA+++Y
Sbjct: 241 T---------VRPEDYSLWNRLGATLANGDRSEEAVEAYT-------------------- 271
Query: 326 LLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA-GT 384
+AL QP I++ + + C G + EA+ F A
Sbjct: 272 ----------RAL------EIQPGFIRSRYN-----LGISCINLGAYREAVSNFLTALSL 310
Query: 385 HPKSKP--FAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLS 427
KS+ A NI A L + +L + + L
Sbjct: 311 QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 41/320 (12%), Positives = 93/320 (29%), Gaps = 51/320 (15%)
Query: 143 NAIIAAMYRAKRYDDAVALFK--YFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRR 200
+ + + V+ + Y+F + + EG + +
Sbjct: 31 RRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEA 90
Query: 201 IIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSL-VYNNLISGFLNL 259
I P + ++ L + A+ L+ L +L ++L L + N
Sbjct: 91 AILQDP--GDAEAWQFLGITQAENENEQAAIVALQRCL--ELQPNNLKALMALAVSYTNT 146
Query: 260 GNLEKANELFDE-LKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPAT 318
+ + A E +K N + N+ +
Sbjct: 147 SHQQDACEALKNWIK---------QNPKYKYLVKNKKGSPGLTRRMS------------- 184
Query: 319 CNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIET 378
+ + E + L+ + N ++ D + G+F+ AI+
Sbjct: 185 -----KSPVDSSVLEGVKELYLEAAHQ----NGDMIDPDLQTGLGVLFHLSGEFNRAIDA 235
Query: 379 FKKA-GTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLRE-ISTKSLSPD-VTTFRT 435
F A P+ D + +N + A + EEA + + + P + +
Sbjct: 236 FNAALTVRPE------DYSLWNRLGATLANGDRSEEAVEAYTRAL---EIQPGFIRSRYN 286
Query: 436 LIDAYLKVERIDDALELFNR 455
L + + + +A+ F
Sbjct: 287 LGISCINLGAYREAVSNFLT 306
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 53/290 (18%), Positives = 95/290 (32%), Gaps = 58/290 (20%)
Query: 102 GPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIR------PTVFTCNAIIAAMYRAK-R 154
G + H+ L +A L +QA+ + P V T I+A +YR + +
Sbjct: 2 GSSHHHHHHSSGL---VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK 58
Query: 155 YDDAVALFKYFFDQA-------------DIVPNIVSYNNLINTYCDEGKVDEGMNVFRR- 200
Y +A L A + + NNL Y GK E + +R
Sbjct: 59 YKEAAHLLN----DALAIREKTLGKDHPAV---AATLNNLAVLYGKRGKYKEAEPLCKRA 111
Query: 201 --IIETAPVGPS----SNTYRHLTKGFVDAGRIGEAVDLLR---DMLSRQLGAD----SL 247
I E +G + +L + G+ E R ++ + +LG D +
Sbjct: 112 LEIREKV-LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170
Query: 248 VYNNLISGFLNLGNLEKANELF----DELKQRCLVYDGVVNATFM----EWWFNQGKDKE 299
NNL S +L G + A L+ ++ N E ++ K ++
Sbjct: 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRD 230
Query: 300 AMQSY-KSLMERNFRM----TPATCNTLLEVLLKHEKKEEAQALFEQMLD 344
+ + ++ T +L + + K E A L +
Sbjct: 231 SAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 50/276 (18%), Positives = 96/276 (34%), Gaps = 58/276 (21%)
Query: 225 GRIGEAVDLLR---DMLSRQLGADSL----VYNNLISGFLNLGNLEKANELFD---ELKQ 274
G AV L + + L + G D + N L + + ++A L + +++
Sbjct: 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIRE 74
Query: 275 RCLVYDGVVNATFM----EWWFNQGKDKEAMQSYKSLMERNFRM-------TPATCNTLL 323
+ L D A + + +GK KEA K +E ++ N L
Sbjct: 75 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLA 134
Query: 324 EVLLKHEKKEEAQALFEQML--------DNHQPPNIQAVNSDTFNIMVNECFKHGKFSEA 375
+ K EE + + + L + PN+ + T N + + K GK+ +A
Sbjct: 135 LLCQNQGKAEEVEYYYRRALEIYATRLGPDD--PNV----AKTKNNLASCYLKQGKYQDA 188
Query: 376 IETFKKA---------GT-HPKSKPFAMDVAG-YNNIIARYCENEMLEEAEKLL-REIST 423
+K+ G+ + D + + R + ++
Sbjct: 189 ETLYKEILTRAHEKEFGSVNG-------DNKPIWMHAEEREESKDKRRDSAPYGEYGSWY 241
Query: 424 KSL---SPDV-TTFRTLIDAYLKVERIDDALELFNR 455
K+ SP V TT R+L Y + +++ A L +
Sbjct: 242 KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 6e-08
Identities = 45/286 (15%), Positives = 76/286 (26%), Gaps = 80/286 (27%)
Query: 154 RYDDAVALFKYFFDQA-DIV--------PNI-VSYNNLINTYCDEGKVDEGMNVFRRIIE 203
AV L K QA + + P++ N L Y D+ K E ++ +
Sbjct: 16 PRGSAVPLCK----QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALA 71
Query: 204 ------------TAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS---RQLGAD--- 245
A T +L + G+ EA L + L + LG
Sbjct: 72 IREKTLGKDHPAVA------ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD 125
Query: 246 -SLVYNNLISGFLNLGNLEKANELFDE-LKQRCLVYD-------------GVVNATFMEW 290
+ NNL N G E+ + L+
Sbjct: 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASC------- 178
Query: 291 WFNQGKDKEAMQSY-KSLMERNFRM-------TPATCNTLLEVLLKHEKKEEAQALFEQM 342
+ QGK ++A Y + L + + E +K+ ++ E
Sbjct: 179 YLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYG 238
Query: 343 L------DNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382
+ P + T + + GK A A
Sbjct: 239 SWYKACKVDS--PTVNT----TLRSLGALYRRQGKLEAAHTLEDCA 278
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 8e-11
Identities = 41/249 (16%), Positives = 84/249 (33%), Gaps = 43/249 (17%)
Query: 148 AMYRAKRYDDAVALFKYFFDQA-DIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAP 206
Y+A+++D+A+ +++A ++ +I NN ++G+ + ++ +E
Sbjct: 14 KFYKARQFDEAIE----HYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVE--- 66
Query: 207 VGPS-SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKA 265
G Y+ ++K F G + L+ + + SL + L N EK
Sbjct: 67 QGREMRADYKVISKSFARIGNAYHKLGDLKKTI--EYYQKSLTEHRTADILTKLRNAEKE 124
Query: 266 NELFDELKQRCLVYDGVVNATFMEWWFN-------QGKDKEAMQSYKSLMERNFRMTP-- 316
+ + VN E + A+++Y +++R P
Sbjct: 125 LKKAEAEAY--------VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA----PED 172
Query: 317 -ATCNTLLEVLLKHEKKEEAQALFEQ--MLDNHQPPNIQAVNSDTFNIMVNECFKHGKFS 373
+ L K EA A + D PN + +++
Sbjct: 173 ARGYSNRAAALAKLMSFPEAIADCNKAIEKD----PN----FVRAYIRKATAQIAVKEYA 224
Query: 374 EAIETFKKA 382
A+ET A
Sbjct: 225 SALETLDAA 233
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 39/285 (13%), Positives = 75/285 (26%), Gaps = 67/285 (23%)
Query: 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDM 237
N + + DE + + + E
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELHK------------------------------- 36
Query: 238 LSRQLGADSLVYNNLISGFLNLGNLEKANELFD---ELK-QRCLVYDGVVNATFMEWWFN 293
D NN + G E A + E + Y + + +
Sbjct: 37 -------DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS-----FAR 84
Query: 294 QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQA 353
G + K +E + T + ++L K E+ E +
Sbjct: 85 IGNAYHKLGDLKKTIEYYQK--SLTEHRTADILTKLRNAEKELKKAEAEA------YVNP 136
Query: 354 VNSDTFNIMVNECFKHGKFSEAIETFKKA-GTHPKSKPFAMDVAGYNNIIARYCENEMLE 412
++ + E F + A++ + + P+ D GY+N A +
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFP 190
Query: 413 EAEKLLRE-ISTKSLSPD-VTTFRTLIDAYLKVERIDDALELFNR 455
EA + I P+ V + A + V+ ALE +
Sbjct: 191 EAIADCNKAI---EKDPNFVRAYIRKATAQIAVKEYASALETLDA 232
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 1e-10
Identities = 60/287 (20%), Positives = 95/287 (33%), Gaps = 59/287 (20%)
Query: 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIR------PTVFTCNAIIAAMYRAK-RYDDAV 159
LHN V G + A L +QA+ + P V T I+A +YR + +Y DA
Sbjct: 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAA 89
Query: 160 ALFKYFFDQA-DIV--------PNI-VSYNNLINTYCDEGKVDEGMNVFRRIIE------ 203
L A I P + + NNL Y GK E + +R +E
Sbjct: 90 NLLN----DALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 145
Query: 204 ------TAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLR---DMLSRQLGAD----SLVYN 250
A +L + G+ E + ++ +LG D + N
Sbjct: 146 GKDHPDVA------KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKN 199
Query: 251 NLISGFLNLGNLEKANELF----DELKQRCLVYDGVVNATFM----EWWFNQGKDKEAMQ 302
NL S +L G ++A L+ +R N E +GK K+
Sbjct: 200 NLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259
Query: 303 SY-KSLMERNFRM----TPATCNTLLEVLLKHEKKEEAQALFEQMLD 344
+ ++ T L + + K E A+ L E +
Sbjct: 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 53/327 (16%), Positives = 105/327 (32%), Gaps = 91/327 (27%)
Query: 173 PNI-VSYNNLINTYCDEGKVDEGMNVFRRIIE------------TAPVGPSSNTYRHLTK 219
P + +NL+ Y +G+ + + + ++ +E A L
Sbjct: 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVA------TMLNILAL 77
Query: 220 GFVDAGRIGEAVDLLRDMLS---RQLGAD----SLVYNNLISGFLNLGNLEKANELFDEL 272
+ D + +A +LL D L+ + LG D + NNL + G ++A L
Sbjct: 78 VYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC--- 134
Query: 273 KQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKK 332
K A++ + ++ ++ N L + K
Sbjct: 135 -------------------------KRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY 169
Query: 333 EEAQALFEQML--------DNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA-- 382
EE + +++ L + PN+ + T N + + K GKF +A +K+
Sbjct: 170 EEVEYYYQRALEIYQTKLGPDD--PNV----AKTKNNLASCYLKQGKFKQAETLYKEILT 223
Query: 383 -------GT-HPKSKPFAMDVAG-YNNIIARYCENEMLEEAEKLL-REISTKSL---SPD 429
G+ + + + R ++ K+ SP
Sbjct: 224 RAHEREFGSVDD-------ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT 276
Query: 430 V-TTFRTLIDAYLKVERIDDALELFNR 455
V TT + L Y + + + A L
Sbjct: 277 VTTTLKNLGALYRRQGKFEAAETLEEA 303
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 51/295 (17%), Positives = 87/295 (29%), Gaps = 81/295 (27%)
Query: 146 IAAMYRAK-RYDDAVALFKYFFDQA-DIV--------PNI-VSYNNLINTYCDEGKVDEG 194
+ Y ++ RY+ AV L K QA + + P++ N L Y D+ K +
Sbjct: 33 LVIQYASQGRYEVAVPLCK----QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDA 88
Query: 195 MNVFRRIIE------------TAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLR---DMLS 239
N+ + A T +L + G+ EA L + ++
Sbjct: 89 ANLLNDALAIREKTLGKDHPAVA------ATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 142
Query: 240 RQLGAD----SLVYNNLISGFLNLGNLEKANELFDE-LKQRCLVYD-------------G 281
+ LG D + NNL N G E+ + L+
Sbjct: 143 KVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLA 202
Query: 282 VVNATFMEWWFNQGKDKEAMQSY-KSLMERNFRM-------TPATCNTLLEVLLKHEKKE 333
+ QGK K+A Y + L + R E K++
Sbjct: 203 SC-------YLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQK 255
Query: 334 EAQALFEQML------DNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382
+ + E + P + T + + GKF A + A
Sbjct: 256 DGTSFGEYGGWYKACKVDS--PTVTT----TLKNLGALYRRQGKFEAAETLEEAA 304
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 1e-10
Identities = 26/192 (13%), Positives = 40/192 (20%), Gaps = 12/192 (6%)
Query: 657 MSGYQQFGSNQMMGQQSFGPNKMAGEQPFSPFQRMGQQSSGPSQMSGQQSSGPSQMSGQQ 716
MS +++ Q Q + F P Q QM M QQ
Sbjct: 1 MSHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQ 60
Query: 717 SSGPAQMLGQQSLGPNQMERQQPQGSYQKWGQQAFGSNQMGGQQPSGYNRMGEQQHFGWQ 776
PAQ Q + + + P+ Y + G
Sbjct: 61 FLTPAQEQLHQQIDQATTSMNDMHL------------HNVPLVDPNAYMQPQVPVQMGTP 108
Query: 777 QMSGHQPNKIAQWTGQPPSAPSQTAGQQQSWQPQTSAQQQSWSQAAEQPPVGSPQEDQNP 836
QP + + Q + + PP +
Sbjct: 109 LQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERM 168
Query: 837 SGPPEWQENHQR 848
P E
Sbjct: 169 LVPSELSNASPD 180
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 6e-10
Identities = 26/177 (14%), Positives = 39/177 (22%), Gaps = 7/177 (3%)
Query: 647 MGQQSFR--PTQMSGYQQFGSNQMMGQQSFGPNKMAGEQPFSPFQRMGQQSSGPSQMSGQ 704
M R P Y Q + + F P + S Q M Q
Sbjct: 1 MSHHKKRVYPQAQLQYGQ-NATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQ 59
Query: 705 QSSGPSQMSGQQSSGPAQMLGQQSLGPNQMERQQPQGSYQKWGQQAFGSNQMGGQQPSGY 764
Q P+Q Q A + + + P Q G+ QQP
Sbjct: 60 QFLTPAQEQLHQQIDQATT-SMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAA 118
Query: 765 NRMGEQQHFGWQQMSGHQPNKIAQWTGQPPSAPSQTAGQQQSWQPQTSAQQQSWSQA 821
G+ +P P P ++ +
Sbjct: 119 PAYGQPSA---AMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPS 172
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 3e-09
Identities = 24/155 (15%), Positives = 35/155 (22%), Gaps = 1/155 (0%)
Query: 566 AAPVPPPRTSGPPQMTGQQYSGYNRMAREQQFGSNQMAGQQSLGPNQMEGQQHFGSYQRM 625
A P+ P PPQ Y +M Q M QQ L P Q + Q
Sbjct: 20 ATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTS 79
Query: 626 GQQSFGPNQMAGQQHFTSNQMMGQQSFRPTQMSGYQQFGSNQMMGQQSFGPNKMAGEQPF 685
N + + Q P Q + G N Q
Sbjct: 80 MNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQL- 138
Query: 686 SPFQRMGQQSSGPSQMSGQQSSGPSQMSGQQSSGP 720
P + + + ++
Sbjct: 139 YPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSE 173
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 1e-07
Identities = 24/171 (14%), Positives = 36/171 (21%), Gaps = 3/171 (1%)
Query: 570 PPPRTSGPPQMTGQQYSGYNRMAREQQFGSNQMAGQQSLGPNQMEGQQHFGSYQRMGQQS 629
R PQ Q + + QF Q + QM G G+ MGQQ
Sbjct: 4 HKKRVY--PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQM-GMPPQGAVPSMGQQQ 60
Query: 630 FGPNQMAGQQHFTSNQMMGQQSFRPTQMSGYQQFGSNQMMGQQSFGPNKMAGEQPFSPFQ 689
F + Q G +QP +
Sbjct: 61 FLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPA 120
Query: 690 RMGQQSSGPSQMSGQQSSGPSQMSGQQSSGPAQMLGQQSLGPNQMERQQPQ 740
++ M P + + + ER
Sbjct: 121 YGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVP 171
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 2e-07
Identities = 19/171 (11%), Positives = 36/171 (21%), Gaps = 4/171 (2%)
Query: 564 GYAAPVPPPRTSGPPQMTGQQYSGYNRMAREQQFGSNQMAGQQSLGPNQMEGQQHFGSYQ 623
Y + + QM M QQ Q
Sbjct: 8 VYPQAQLQY-GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQ 66
Query: 624 RMGQQSFGPNQMAGQQHFTSNQMMGQQSFRPTQMSGYQQFGSNQMMGQQSFGPNKMAGEQ 683
Q + N + + Q + QQ A Q
Sbjct: 67 EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQM---GTPLQQQQQPMAAPAYGQ 123
Query: 684 PFSPFQRMGQQSSGPSQMSGQQSSGPSQMSGQQSSGPAQMLGQQSLGPNQM 734
P + + + + + P P + ++ L P+++
Sbjct: 124 PSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSEL 174
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 9e-07
Identities = 21/175 (12%), Positives = 32/175 (18%), Gaps = 13/175 (7%)
Query: 571 PPRTSGPPQMTGQQYSGYNRMAREQQFGSNQMAGQQSLGPNQMEGQQHFGSYQRMGQQSF 630
+ P + + P Q Q
Sbjct: 4 HKKRVYPQAQLQYGQ------------NATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQG 51
Query: 631 GPNQMAGQQHFTSNQMMGQQSFRPTQMSGYQQFGSNQMMGQQSFGPNKMAGEQPFSPFQR 690
M QQ T Q Q S N + + Q +P Q
Sbjct: 52 AVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQ- 110
Query: 691 MGQQSSGPSQMSGQQSSGPSQMSGQQSSGPAQMLGQQSLGPNQMERQQPQGSYQK 745
QQ ++ M P +L + + P
Sbjct: 111 QQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPP 165
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 8e-05
Identities = 20/116 (17%), Positives = 27/116 (23%), Gaps = 4/116 (3%)
Query: 736 RQQPQGSYQKWGQQAFGSNQMGGQQPSGYNRMGEQQHFGWQQMSGHQPNKIAQWTGQPPS 795
R PQ Q + + + + QM + Q
Sbjct: 7 RVYPQAQLQ----YGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFL 62
Query: 796 APSQTAGQQQSWQPQTSAQQQSWSQAAEQPPVGSPQEDQNPSGPPEWQENHQRAAA 851
P+Q QQ Q TS P Q Q+ Q AA
Sbjct: 63 TPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAA 118
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 39/240 (16%), Positives = 62/240 (25%), Gaps = 21/240 (8%)
Query: 147 AAMYRAKRYDDAVALFKYFFDQA-DIVPNIVS-YNNLINTYCDEGKVDEGMNVFRRIIET 204
A F QA I P++ +N L G D F ++E
Sbjct: 51 VLYDSLGLRALARNDF----SQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 106
Query: 205 APVGPSSNTYRHLTKGFV--DAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNL 262
P + Y HL +G GR A D L D L L
Sbjct: 107 DP----TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEK 161
Query: 263 EKANELFDELKQRCLVYDGVVNATF-MEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNT 321
+ L ++ G F + Q + ++
Sbjct: 162 QAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFY- 220
Query: 322 LLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKK 381
L + L + A ALF+ + N N + E G+ + + +
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVAN-NVHNFVE-----HRYALLELSLLGQDQDDLAESDQ 274
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 29/253 (11%), Positives = 75/253 (29%), Gaps = 35/253 (13%)
Query: 148 AMYRAKRYDDAVALFKYFFDQA-DIVPN-IVSYNNLINTYCDEGKVDE---GMNVFRRII 202
+++ Y +A+ F++ N YN Y + K D + + +
Sbjct: 12 FLFKNNNYAEAIE----VFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV 67
Query: 203 ETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGAD-SLVYNNLISGFLNLGN 261
S + + K + G+ A+ + + +Y + S F N GN
Sbjct: 68 NATKA--KSADFEYYGKILMKKGQDSLAIQQYQAAV--DRDTTRLDMYGQIGSYFYNKGN 123
Query: 262 LEKANELFDE-LKQRCLVYDGVVNATFMEWWFN-------QGKDKEAMQSYKSLMERNFR 313
A + ++ ++ T + ++ + +A S+ ++E
Sbjct: 124 FPLAIQYMEKQIR---------PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174
Query: 314 MTPATCN--TLLEVLLKHEKKEEAQALFEQM--LDNHQPPNIQAVNSDTFNIMVNECFKH 369
+ K+ A+ +E++ + + + + +
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234
Query: 370 GKFSEAIETFKKA 382
+A +K
Sbjct: 235 RDKVKADAAWKNI 247
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 8e-08
Identities = 25/258 (9%), Positives = 58/258 (22%), Gaps = 58/258 (22%)
Query: 29 LALNPNSPNPNLNPISARGYAFSSA---EEAAAERRRRKRRLRIEPPLHAIRPNPTQPPP 85
A NSP R + + A + IE +
Sbjct: 30 EAKKYNSPYIYNR----RAVCYYELAKYDLAQKD---------IETYFSKVNATK----- 71
Query: 86 RDPNAPRLPDTTSALVGPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTC-NA 144
+ L++ G A + AV T
Sbjct: 72 AKSAD----------------FEYYGKILMKKGQDSLAIQQYQAAV--DRDTTRLDMYGQ 113
Query: 145 IIAAMYRAKRYDDAVALFKYFFDQA-DIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRII 202
I + Y + A+ + ++ + L Y + + + F +++
Sbjct: 114 IGSYFYNKGNFPLAIQ----YMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVL 169
Query: 203 ETAPVGPSSNTYRHLTKGFVDAGRIGE----------AVDLLRDMLSRQLGADSLVYNNL 252
E P Y + + +++ ++ +
Sbjct: 170 ELKP--NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI 227
Query: 253 ISGFLNLGNLEKANELFD 270
+ + KA+ +
Sbjct: 228 AYYYTINRDKVKADAAWK 245
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 31/264 (11%), Positives = 71/264 (26%), Gaps = 44/264 (16%)
Query: 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDL 233
N + E + VF ++ S Y + + + A
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN--SPYIYNRRAVCYYELAKYDLAQKD 59
Query: 234 LRDMLSRQLGAD---SLVYNNLISGFLNLGNLEKANELFD---ELKQRCLVYDGVVNATF 287
+ + ++ A S + + G A + + + + T
Sbjct: 60 I-ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR-----------DTTR 107
Query: 288 MEWWFN-------QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFE 340
++ + +G A+Q + + P L + +++ +A + F
Sbjct: 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166
Query: 341 QMLDNHQPPNIQAVNSDTFN---IMVNECFKHGKFSEAIETFKKA-----GTHPKSKPFA 392
++L+ PN + K A ++K K K
Sbjct: 167 KVLELK--PN----IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDEL 220
Query: 393 MDVAGYNNIIARYCENEMLEEAEK 416
++ I Y N +A+
Sbjct: 221 IEA--NEYIAYYYTINRDKVKADA 242
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 25/265 (9%), Positives = 65/265 (24%), Gaps = 43/265 (16%)
Query: 216 HLTKGFV--DAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELK 273
EA+++ + +++ +YN + L + A + +
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 274 QRCLVYDGVVNATFMEWWFN-------QGKDKEAMQSY-KSL-MERNFRMTPATCNTLLE 324
+ + +G+D A+Q Y ++ + +
Sbjct: 65 SKVNA-----TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR---LDMYGQIGS 116
Query: 325 VLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGT 384
A E+ + + F + + + ++ +A +F K
Sbjct: 117 YFYNKGNFPLAIQYMEKQIR------PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE 170
Query: 385 -HPKSKPFAMDVAGYNN---IIARYCENEMLEEAE-------KLLREISTKSLSPDVTTF 433
P GY A + A+ ++ K +
Sbjct: 171 LKPN------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEAN 224
Query: 434 RTLIDAYLKVERIDDALELFNRMVE 458
+ Y A + ++
Sbjct: 225 EYIAYYYTINRDKVKADAAWKNILA 249
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 63.3 bits (152), Expect = 3e-10
Identities = 17/131 (12%), Positives = 41/131 (31%), Gaps = 7/131 (5%)
Query: 331 KKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKP 390
+ QA Q Q + + C + A + K
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLA-----FFKCCLLTDQLPLAHHLLVVHHGQRQ-KR 160
Query: 391 FAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDAL 450
+ + YN ++ + +E +L + L+PD+ ++ + + ++ +
Sbjct: 161 KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTI 220
Query: 451 E-LFNRMVESG 460
E +M + G
Sbjct: 221 ERCLEQMSQEG 231
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 60.6 bits (145), Expect = 2e-09
Identities = 38/308 (12%), Positives = 82/308 (26%), Gaps = 16/308 (5%)
Query: 59 ERRRRKRRLRIEPPLHAIRPNPTQPPPRDPNAPRLPDTTSA----------LVGPRLN-L 107
++ R +RL+ + + R PRL A P L
Sbjct: 36 TQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQL 95
Query: 108 HNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFD 167
+Q LD + Q +++ A + A L
Sbjct: 96 ARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHG 155
Query: 168 Q--ADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG 225
Q + + YN ++ + +G E + V + + A + P +Y +
Sbjct: 156 QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSYAAALQCMGRQD 214
Query: 226 RIGEAV-DLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVN 284
+ + L M L +L L+S + + KA VN
Sbjct: 215 QDAGTIERCLEQMSQEGLKLQALFTAVLLSEE-DRATVLKAVHKVKPTFSLPPQLPPPVN 273
Query: 285 ATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLD 344
+ + + + ++ + + L + E+ +++
Sbjct: 274 TSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKH 333
Query: 345 NHQPPNIQ 352
+
Sbjct: 334 ARKTLKTL 341
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.7 bits (135), Expect = 2e-08
Identities = 14/177 (7%), Positives = 42/177 (23%), Gaps = 4/177 (2%)
Query: 398 YNNIIARYCENEMLEEAEKLL---REISTKSLSPDVTTFRTLIDAYLKVERIDDALELFN 454
+ L A LL K + + ++ + + + + +
Sbjct: 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF 189
Query: 455 RMVESGLRVVVSFGTKVFNELITKGKVAECAP-ILTKMGEKDPKPDFLIYDVVVRGLCNE 513
+ ++GL + + + + A L +M ++ K L V++
Sbjct: 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249
Query: 514 GLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPVP 570
+ + P + ++ +
Sbjct: 250 TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 55.6 bits (132), Expect = 6e-08
Identities = 19/167 (11%), Positives = 49/167 (29%), Gaps = 4/167 (2%)
Query: 207 VGPSSNTYRHLTKGFVDAGRIGEAVDLL---RDMLSRQLGADSLVYNNLISGFLNLGNLE 263
+ K + ++ A LL ++ +YN ++ G+ G +
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK 182
Query: 264 KANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLM-ERNFRMTPATCNTL 322
+ + +K L D + A ++ Q +D ++ M + ++ L
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVL 242
Query: 323 LEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH 369
L + + + Q P + ++ +
Sbjct: 243 LSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVS 289
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 44/308 (14%), Positives = 87/308 (28%), Gaps = 48/308 (15%)
Query: 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPT-VFTCNAIIAAMYRAKRYDDAVALFKY 164
++ GDL A L AV + P + + ++ A++
Sbjct: 66 QPFEEGLRRLQEGDLPNAVLLFEAAV--QQDPKHMEAWQYLGTTQAENEQELLAIS---- 119
Query: 165 FFDQA-DIVPNIV-SYNNLINTYCDEGKVDEGMNVFRRIIETAP-----VGPSSNTYRHL 217
+ ++ P+ + L ++ +E + + R + P V P+
Sbjct: 120 ALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA 179
Query: 218 TKG--------FVDAGRIGEAVDLLRDMLSRQLG-ADSLVYNNLISGFLNLGNLEKANEL 268
G + E +L + D V L F G +KA +
Sbjct: 180 GLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 239
Query: 269 FDE-LKQRCLVYDGVVNATFMEWWFN-------QGKDKEAMQSYKSLMERNFRMTPATCN 320
F L V W + +EA+ +Y+ +E + N
Sbjct: 240 FTAALS---------VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 290
Query: 321 TLLEVLLKHEKKEEAQALFEQMLDNHQP------PNIQAVNSDTFNIMVNECFKHGKFSE 374
L + EA F + L N Q A++ + ++ + G+
Sbjct: 291 -LGISCINLGAHREAVEHFLEAL-NMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348
Query: 375 AIETFKKA 382
+
Sbjct: 349 YGAADARD 356
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 51/319 (15%), Positives = 96/319 (30%), Gaps = 43/319 (13%)
Query: 143 NAIIAAMYRAKRYDD-AVALFK--YFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFR 199
A YDD A + Y F++ + + + EG + + +F
Sbjct: 29 KRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFE 88
Query: 200 RIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSL-VYNNLISGFLN 258
++ P +++L + + A+ LR L +L D+ L F N
Sbjct: 89 AAVQQDP--KHMEAWQYLGTTQAENEQELLAISALRRCL--ELKPDNQTALMALAVSFTN 144
Query: 259 LGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPAT 318
+A E+ + + + + S
Sbjct: 145 ESLQRQACEILRDWLR--------YTPAYAHLVTPAEEGAGGAGLGPSKRI--------- 187
Query: 319 CNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIET 378
L LL E + LF + P +I D + G++ +A++
Sbjct: 188 ----LGSLLSDSLFLEVKELFLAAV-RLDPTSIDP---DVQCGLGVLFNLSGEYDKAVDC 239
Query: 379 FKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLRE-ISTKSLSPD-VTTFRTL 436
F A +P D +N + A EEA R + L P + + L
Sbjct: 240 FTAA---LSVRP--NDYLLWNKLGATLANGNQSEEAVAAYRRAL---ELQPGYIRSRYNL 291
Query: 437 IDAYLKVERIDDALELFNR 455
+ + + +A+E F
Sbjct: 292 GISCINLGAHREAVEHFLE 310
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 6e-10
Identities = 25/320 (7%), Positives = 67/320 (20%), Gaps = 41/320 (12%)
Query: 147 AAMYRAKRYDDAVALFKYFFDQA-DIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIET 204
+ + QA + P +V+ + V + V +
Sbjct: 80 GGKQALETVQRLLP----VLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGL 135
Query: 205 APVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEK 264
P G + + +L + + G L +++
Sbjct: 136 TPE--QVVAIASHDGGKQALETVQALLPVLCQAHGLT-PEQVVAIASNGGGKQALETVQR 192
Query: 265 ANELFDELKQRCLVYDGVVNATFMEWWFN-------QGKDKEAMQSYKSLMERNFRMTPA 317
+ + + + + + + + A
Sbjct: 193 LLPVLCQAHG--------LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 244
Query: 318 TCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIE 377
+ E + + Q + +
Sbjct: 245 IAS-NGGGKQALETVQRLLPVLCQAH------GLTPQQVVAIASNSGGKQALETVQRLLP 297
Query: 378 TFKKA-GTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPD-VTTFRT 435
+A G P+ V + E ++ +L + L+P V +
Sbjct: 298 VLCQAHGLTPQ------QVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVAIAS 349
Query: 436 LIDAYLKVERIDDALELFNR 455
+E + L + +
Sbjct: 350 HDGGKQALETVQRLLPVLCQ 369
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 22/286 (7%), Positives = 58/286 (20%), Gaps = 34/286 (11%)
Query: 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPT-VFTCNAIIAAMYRAKRYDDAVALFKYF 165
+ + + + QA + P V + + +
Sbjct: 211 IASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASNGGGKQALETVQRLLP----V 264
Query: 166 FDQA-DIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD 223
QA + P +V+ + V + V + P + K
Sbjct: 265 LCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ--A 322
Query: 224 AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVV 283
+ + +L + + G L +++ + + +
Sbjct: 323 LETVQRLLPVLCQAHGLT-PQQVVAIASHDGGKQALETVQRLLPVLCQAHG--------L 373
Query: 284 NATFMEWWFN-------QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQ 336
+ + + + A + E +
Sbjct: 374 TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS-HDGGKQALETVQRLL 432
Query: 337 ALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382
+ Q P + A+ S + A
Sbjct: 433 PVLCQAHG-LTPQQVVAIAS-----NGGGRPALESIVAQLSRPDPA 472
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 34/303 (11%), Positives = 83/303 (27%), Gaps = 76/303 (25%)
Query: 150 YRAKRYDDAVALFKYFFDQADIVPNIV----SYNNLINTYCDEGKVDEGMNVFRRIIETA 205
+ K Y +A+ ++ + V + + + + Y + M
Sbjct: 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL------ 165
Query: 206 PVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG-ADSLVYNNLISGFLNLGNLEK 264
+A+D+ ++ + S + + + + +K
Sbjct: 166 -----------------------QALDIYQNHPLYSIRTIQS--LFVIAGNYDDFKHYDK 200
Query: 265 ANELFDE-LKQRCLVYD-----------GVVNATFMEWWFNQGKDKEAMQSY-KSL---M 308
A + L+ + + + G D+ A++ + K+
Sbjct: 201 ALPHLEAALELAMDIQNDRFIAISLLNIANS-------YDRSGDDQMAVEHFQKAAKVSR 253
Query: 309 ERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNS--DTFNIMVNEC 366
E+ + P L L K + ++A E+ LD+ + + + E
Sbjct: 254 EKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKET 313
Query: 367 FKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCEN--------EMLEEAEKLL 418
K + + F+K H + A E+ + K
Sbjct: 314 VDERKIHDLLSYFEKKNLHA-------YIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366
Query: 419 REI 421
+I
Sbjct: 367 EDI 369
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 44/330 (13%), Positives = 101/330 (30%), Gaps = 46/330 (13%)
Query: 149 MYRAKRYDDAVALFK---YFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETA 205
M R DA L Q + +++ Y +L+ + +++
Sbjct: 22 MIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCF------------RHQLMLD-- 67
Query: 206 PVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISG--FLNLGNLE 263
Y K + + + E ++ + + ++L Y+ G +
Sbjct: 68 --------YLEPGKTYGNRPTVTELLETI-ETPQKKLTGLLKYYSLFFRGMYEFDQKEYV 118
Query: 264 KANELFDE-LKQRCLVYDGVVNATFM----EWWFNQGKDKEAMQSY-KSL----MERNFR 313
+A + E K+ V D + A F E +++ + +M ++L +
Sbjct: 119 EAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178
Query: 314 MTPATC-NTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKF 372
+ + + ++A E L+ + + + N + G
Sbjct: 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238
Query: 373 SEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCE-------NEMLEEAEKLLREISTKS 425
A+E F+KA + K + + C+ + +EE + S K
Sbjct: 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298
Query: 426 LSPDVTTFRTLIDAYLKVERIDDALELFNR 455
+ + + +I D L F +
Sbjct: 299 YKELFLFLQAVYKETVDERKIHDLLSYFEK 328
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 36/265 (13%), Positives = 73/265 (27%), Gaps = 27/265 (10%)
Query: 110 RVQSLIRAGDLDAASYLARQA---VFSRIRPTVFTCNAIIAAMYRAK-RYDDAVALFKYF 165
R Q I G+ D A LA+ A + + +++ + K ++AL +
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79
Query: 166 FDQA----DIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNT------YR 215
A + S +G + + + R
Sbjct: 80 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139
Query: 216 HLTKGFVDAGRIGEAVDLLRDMLSRQLGADSL----VYNNLISGFLNLGNLEKANELFDE 271
+ R+ EA R + LI L G+L+ A +
Sbjct: 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 199
Query: 272 LKQRC------LVYDGVVNATFMEWWFNQGKDKEA---MQSYKSLMERNFRMTPATCNTL 322
L+ + N + +W G A ++ N +
Sbjct: 200 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259
Query: 323 LEVLLKHEKKEEAQALFEQMLDNHQ 347
+ + E A+ + E++ +N +
Sbjct: 260 ARAQILLGEFEPAEIVLEELNENAR 284
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 9e-06
Identities = 33/256 (12%), Positives = 76/256 (29%), Gaps = 22/256 (8%)
Query: 224 AGRIGEAVDLLRDMLSRQLGAD----SLVYNNLISGFLNLGNLEKANELFDE---LKQRC 276
G EA L + L + + L G L ++ L + + ++
Sbjct: 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH 86
Query: 277 LVYDGVVNATFM--EWWFNQGKDKEAMQSYK----SLMERNFRMTPATC---NTLLEVLL 327
V+ + + E F QG + A ++ + + E++ P ++L
Sbjct: 87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 146
Query: 328 KHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPK 387
+ +EA+A ++ Q +++ G A +
Sbjct: 147 AWARLDEAEASARSGIEVLSSYQPQQQ-LQCLAMLIQCSLARGDLDNARSQLNRLENLLG 205
Query: 388 SKPFAMDVAGYNNIIARYCENEM--LEEAEKLLREI--STKSLSPDV-TTFRTLIDAYLK 442
+ + D N + A LR + + + +R + A +
Sbjct: 206 NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL 265
Query: 443 VERIDDALELFNRMVE 458
+ + A + + E
Sbjct: 266 LGEFEPAEIVLEELNE 281
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 38/285 (13%), Positives = 82/285 (28%), Gaps = 31/285 (10%)
Query: 90 APRLPDTTSALVGPRLNLHNRVQSLIRAGDLDAASYLARQAV-------FSRIRPTVFTC 142
++ +L + + L G L A +A ++ F
Sbjct: 79 TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV 138
Query: 143 NAIIAAMYRAKRYDDAVALFK---YFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFR 199
++ R D+A A + + LI G +D +
Sbjct: 139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLN 198
Query: 200 RIIETAPVGPSSNTYRHLTKGF-----VDAGRIGEAVDLLRDMLSRQLGADSLV---YNN 251
R+ G + + G A + LR + + + + N
Sbjct: 199 RLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258
Query: 252 LISGFLNLGNLEKANELFDELKQRC----LVYDGVVNATFM-EWWFNQGKDKEAMQSYKS 306
+ + LG E A + +EL + L+ D N + + ++ G+ +A +
Sbjct: 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318
Query: 307 LME--------RNFRMTPATCNTLLEVLLKHEKKEEAQALFEQML 343
++ +F + L L++ E + Q +
Sbjct: 319 ALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRI 363
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 4e-09
Identities = 42/355 (11%), Positives = 107/355 (30%), Gaps = 54/355 (15%)
Query: 149 MYRAKRYDDAVALFKY---FFDQADIVPNIVSYNNLINTYC------------DEGKVDE 193
R DA L + DQ + ++ Y +L+ +
Sbjct: 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQP 81
Query: 194 GMNVFRRIIETAPVGPSS--NTYRHLTKGFV--DAGRIGEAVD-------LLRDMLSRQL 242
++ I+ + Y + +G D A+ L + R
Sbjct: 82 RLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIE 141
Query: 243 GADSLVYNNLISGFLNLGN-------LEKANELFDELKQR------CLVYDGVVNATFME 289
A+ + + + + +A E++ E + C
Sbjct: 142 KAEF--FFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN------ 193
Query: 290 WWFNQGKDKEAMQSYKSLME-----RNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLD 344
+ + + ++A+ ++ + ++ T + + E+A F++ +
Sbjct: 194 -FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252
Query: 345 NHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIAR 404
+ NI + ++ +K GK +A E K + + + ++ + + +
Sbjct: 253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSL 312
Query: 405 YCENEMLEEAEKLLREISTKSLSPDVTTFRTLI-DAYLKVERIDDALELFNRMVE 458
Y E + + +K L D+ F + Y + + A F ++ +
Sbjct: 313 YLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 57.5 bits (138), Expect = 1e-08
Identities = 40/211 (18%), Positives = 82/211 (38%), Gaps = 15/211 (7%)
Query: 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIA-AMYRAKRYDDAVALFKYF 165
L+N G+++ A L R+A+ + P ++ +A + + + +A+ +K
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKAL--EVFPEFAAAHSNLASVLQQQGKLQEALMHYK-- 67
Query: 166 FDQA-DIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD 223
+A I P +Y+N+ NT + V + + R I+ P ++ + +L D
Sbjct: 68 --EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA--FADAHSNLASIHKD 123
Query: 224 AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVV 283
+G I EA+ R L + Y NL + + +E +L +V D +
Sbjct: 124 SGNIPEAIASYRTALKLKPDFPD-AYCNLAHCLQIVCDWTDYDERMKKLVS--IVADQLE 180
Query: 284 NATFMEWWFNQGKDKEAMQSY-KSLMERNFR 313
+ + K++ ER+
Sbjct: 181 KNRLPSVHPHHSMLYPLSHGFRKAIAERHGN 211
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 2e-08
Identities = 31/174 (17%), Positives = 71/174 (40%), Gaps = 19/174 (10%)
Query: 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRD 236
S NNL N ++G ++E + ++R+ +E P + + +L G++ EA+ ++
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPE--FAAAHSNLASVLQQQGKLQEALMHYKE 68
Query: 237 MLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN--- 293
+ + Y+N+ + + +++ A + + Q +N F + N
Sbjct: 69 AIRIS-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ--------INPAFADAHSNLAS 119
Query: 294 ----QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQML 343
G EA+ SY++ ++ A CN L L + ++++
Sbjct: 120 IHKDSGNIPEAIASYRTALKLKPDFPDAYCN-LAHCLQIVCDWTDYDERMKKLV 172
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 4e-06
Identities = 38/184 (20%), Positives = 65/184 (35%), Gaps = 30/184 (16%)
Query: 248 VYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN-------QGKDKEA 300
NNL + GN+E+A L+ + + V F N QGK +EA
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALE--------VFPEFAAAHSNLASVLQQQGKLQEA 62
Query: 301 MQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFN 360
+ YK + + A N + L + + + A + + + I +D +
Sbjct: 63 LMHYKEAIRISPTFADAYSN-MGNTLKEMQDVQGALQCYTRAIQ------INPAFADAHS 115
Query: 361 IMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNII---ARYCENEMLEEAEKL 417
+ + G EAI +++ A P A Y N+ C+ +E K
Sbjct: 116 NLASIHKDSGNIPEAIASYRTALKLKPDFPDA-----YCNLAHCLQIVCDWTDYDERMKK 170
Query: 418 LREI 421
L I
Sbjct: 171 LVSI 174
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 32/301 (10%), Positives = 79/301 (26%), Gaps = 81/301 (26%)
Query: 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPT-VFTCNAIIAAMYRAKRYDDAVALFKY 164
N S+++ +L A+ + P ++ ++ A+
Sbjct: 23 NPMEEGLSMLKLANLAEAALAFEAVC--QAAPEREEAWRSLGLTQAENEKDGLAIIAL-- 78
Query: 165 FFDQA-DIVPNIV-SYNNLINTYCDEGKVDEGMNVFRRIIETAP-------------VGP 209
+ A + P + + L ++ +E + + R + + P V
Sbjct: 79 --NHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDI 136
Query: 210 SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELF 269
+ F E LL L D+ ++ +L + N + A
Sbjct: 137 DDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANL 195
Query: 270 DE-LKQRCLVYDGVVNATFMEWWFN-------QGKDKEAMQSYKSLMERNFRMTPATCNT 321
++ + + W + +EA+ +Y
Sbjct: 196 RRAVE---------LRPDDAQLWNKLGATLANGNRPQEALDAYN---------------- 230
Query: 322 LLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKK 381
+AL + P ++ + + M ++ A + +
Sbjct: 231 --------------RAL------DINPGYVRVMYN-----MAVSYSNMSQYDLAAKQLVR 265
Query: 382 A 382
A
Sbjct: 266 A 266
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 32/289 (11%), Positives = 71/289 (24%), Gaps = 56/289 (19%)
Query: 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRD 236
+ + + E F + + AP +R L + + G A+ L
Sbjct: 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAP--EREEAWRSLGLTQAENEKDGLAIIALNH 80
Query: 237 MLSRQLGADSL-VYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQG 295
L + V+ L N N A W +Q
Sbjct: 81 AR--MLDPKDIAVHAALAVSHTNEHNANAALASLRA------------------WLLSQP 120
Query: 296 KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVN 355
+ ++ ++ + + + + E + L L + +
Sbjct: 121 QYEQL---GSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL------EMNPND 171
Query: 356 SDTFNIMVNECFKHGKFSEAIETFKKA-GTHPKSKPFAMDVAGYNNIIARYCENEMLEEA 414
+ + + A ++A P D +N + A +EA
Sbjct: 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPD------DAQLWNKLGATLANGNRPQEA 225
Query: 415 EKLLRE-ISTKSLSPDVTTFRTLIDAY-------LKVERIDDALELFNR 455
+ ++P + + + D A + R
Sbjct: 226 LDAYNRAL---DINPG------YVRVMYNMAVSYSNMSQYDLAAKQLVR 265
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 4e-08
Identities = 29/250 (11%), Positives = 66/250 (26%), Gaps = 67/250 (26%)
Query: 143 NAIIAAMYRAKRYDDAVALFKYFFDQA-DIVPN-IVSYNNLINTYCDEGKVDEGMNVFRR 200
+ Y+ A F +A + + Y N N +++ + + +
Sbjct: 27 GQQMGRGSEFGDYEKAAEAF----TKAIEENKEDAIPYINFANLLSSVNELERALAFYDK 82
Query: 201 IIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG 260
+E A Y + ++
Sbjct: 83 ALELDS-------------SAATA------------------------YYGAGNVYVVKE 105
Query: 261 NLEKANELFDE-LKQRCLVYDGVVNATFMEWWFN-------QGKDKEAMQSYKSLMERNF 312
++A ++F++ L+ + ++ + K A+ + +E N
Sbjct: 106 MYKEAKDMFEKALR---------AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156
Query: 313 RMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKF 372
T A L +EA + F + + ++D F
Sbjct: 157 NDTEARFQ-FGMCLANEGMLDEALSQFAAVTE------QDPGHADAFYNAGVTYAYKENR 209
Query: 373 SEAIETFKKA 382
+A+E KA
Sbjct: 210 EKALEMLDKA 219
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 3e-05
Identities = 38/227 (16%), Positives = 67/227 (29%), Gaps = 44/227 (19%)
Query: 244 ADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN-------QGK 296
S+ + G+ EKA E F + + N + N +
Sbjct: 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIE--------ENKEDAIPYINFANLLSSVNE 72
Query: 297 DKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNS 356
+ A+ Y +E + A V + E +EA+ +FE+ L N
Sbjct: 73 LERALAFYDKALELDSSAATAYYG-AGNVYVVKEMYKEAKDMFEKALR------AGMENG 125
Query: 357 DTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEK 416
D F ++ K + A+ ++A + D ML+EA
Sbjct: 126 DLFYMLGTVLVKLEQPKLALPYLQRA---VELNE--NDTEARFQFGMCLANEGMLDEALS 180
Query: 417 LLRE-ISTKSLSPDVTTFRTLIDAY-------LKVERIDDALELFNR 455
P DA+ E + ALE+ ++
Sbjct: 181 QFAAVTE---QDPG------HADAFYNAGVTYAYKENREKALEMLDK 218
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 5e-08
Identities = 27/213 (12%), Positives = 60/213 (28%), Gaps = 37/213 (17%)
Query: 249 YNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLM 308
+S + G +A F + +N E ++ DK
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIA--------LNIDRTEMYYWTNVDK---------- 48
Query: 309 ERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK 368
N ++ L K+ ++A ++++L PN N D
Sbjct: 49 --NSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA--PN----NVDCLEACAEMQVC 100
Query: 369 HGKFSEAIETFKKA-GTHPKSKPFAMDVAGYNNI-IARYCENEMLEEAEKLLREISTKSL 426
G+ +A+ ++K ++A + Y E ++ + + S
Sbjct: 101 RGQEKDALRMYEKILQLEAD------NLAANIFLGNYYYLTAEQEKKKLETDYK--KLSS 152
Query: 427 SPD-VTTFRTLIDAYLKVERIDDALELFNRMVE 458
+ L R + A +++
Sbjct: 153 PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 7e-08
Identities = 25/185 (13%), Positives = 53/185 (28%), Gaps = 29/185 (15%)
Query: 107 LHNRVQSLIRAGDLDAASYLARQAV---------------FSRIRPTVFTCNAIIAAMYR 151
+ +V + I AG A RQ + + + A +
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66
Query: 152 AKRYDDAVALFKYFFDQA-DIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGP 209
+ YD A F+ + PN + G+ + + ++ +I++
Sbjct: 67 NRNYDKAYL----FYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA--- 119
Query: 210 SSNTYRHLTKG---FVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKAN 266
N ++ G ++ A + + ++ LS L EKA
Sbjct: 120 -DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKAR 177
Query: 267 ELFDE 271
+
Sbjct: 178 NSLQK 182
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 4e-07
Identities = 25/211 (11%), Positives = 64/211 (30%), Gaps = 40/211 (18%)
Query: 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDM 237
++ + G+ + ++ FR+ I + ++ K + ++
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKL---------- 56
Query: 238 LSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQ------RCLVYDGVVNATFMEWW 291
L + N +KA + EL Q CL +
Sbjct: 57 -----------ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEM-------Q 98
Query: 292 FNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNI 351
+G++K+A++ Y+ +++ A L E++++ + L + P
Sbjct: 99 VCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTK- 155
Query: 352 QAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382
++ +A + +K
Sbjct: 156 ---MQYARYRDGLSKLFTTRYEKARNSLQKV 183
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 6e-05
Identities = 15/118 (12%), Positives = 41/118 (34%), Gaps = 14/118 (11%)
Query: 353 AVNSDTFNIMVNECFKHGKFSEAIETFKKA-----------GTHPKSKPFAMDVAGYNNI 401
+ D V+ + G+ +A+ F++ K + +
Sbjct: 1 GQSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATEL 60
Query: 402 IARYCENEMLEEAEKLLREISTKSLSP-DVTTFRTLIDAYLKVERIDDALELFNRMVE 458
Y +N ++A +E+ +P +V + + + DAL ++ ++++
Sbjct: 61 ALAYKKNRNYDKAYLFYKEL--LQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 26/203 (12%), Positives = 49/203 (24%), Gaps = 29/203 (14%)
Query: 147 AAMYRAKRYDDAVALFKYFFDQA-DIVPNIV-SYNNLINTYCDEGKVDEGMNVFRRIIET 204
R + Y A A + A P ++ Y D+ FR+ +
Sbjct: 16 MEYMRGQDYRQATASIE----DALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI 71
Query: 205 APVGPSSNTYRHLTKGFV---DAGRIGEAVDLLRDMLSRQLGAD-SLVYNNLISGFLNLG 260
P + + G+ R E++ L+ + N G
Sbjct: 72 KP----DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQG 127
Query: 261 NLEKANELFDELKQRCLVYDGVVNATFMEWWFN-------QGKDKEAMQSYKSLMERNFR 313
A +R L F + G+ +A +K R
Sbjct: 128 QFGLAEAYL----KRSLAA----QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV 179
Query: 314 MTPATCNTLLEVLLKHEKKEEAQ 336
+ ++ + A
Sbjct: 180 LQADDLLLGWKIAKALGNAQAAY 202
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 30/217 (13%), Positives = 58/217 (26%), Gaps = 34/217 (15%)
Query: 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFV--DAGRIGEAVDLLR 235
L Y + +++ P N L + + +A + R
Sbjct: 11 KTQLAMEYMRGQDYRQATASIEDALKSDP----KNELAWLVRAEIYQYLKVNDKAQESFR 66
Query: 236 DMLSRQLGADSLVYNNLISG-FL--NLGNLEKANELFDELKQRCLVYDGVVNATFMEWWF 292
LS + + + NN G FL L ++ FD+ T
Sbjct: 67 QALSIK-PDSAEINNNY--GWFLCGRLNRPAESMAYFDK------ALADPTYPTPYIANL 117
Query: 293 N-------QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN 345
N QG+ A K + + PA L + + +A F++
Sbjct: 118 NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE-LARTKMLAGQLGDADYYFKKYQSR 176
Query: 346 HQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382
+ + +D + A ++
Sbjct: 177 VEV-----LQADDLLLGWKI---AKALGNAQAAYEYE 205
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 21/145 (14%), Positives = 45/145 (31%), Gaps = 14/145 (9%)
Query: 116 RAGDLDAASYLARQAVFSRIRPTVFT--CNAIIAAMYRAKRYDDAVALFKYFFDQA-DIV 172
R + +A+ PT + N I + + ++ A A + ++
Sbjct: 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICS-AKQGQFGLAEA----YLKRSLAAQ 143
Query: 173 PN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAV 231
P ++ L T G++ + F++ V L G+ A +G A
Sbjct: 144 PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV----LQADDLLLGWKIAKALGNAQ 199
Query: 232 DLLRDMLS-RQLGADSLVYNNLISG 255
+ S +++G
Sbjct: 200 AAYEYEAQLQANFPYSEELQTVLTG 224
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 10/129 (7%)
Query: 151 RAKRYDDAVALFKYFFDQA---DIVPNI-VSYNNLINTYCDEGKVDEGMNVFRRIIETAP 206
R R +++A F D+A P ++ N +G+ +R + P
Sbjct: 89 RLNRPAESMAYF----DKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP 144
Query: 207 VGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKAN 266
++ L + + AG++G+A + SR + LGN + A
Sbjct: 145 --QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY 202
Query: 267 ELFDELKQR 275
E +L+
Sbjct: 203 EYEAQLQAN 211
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 9e-04
Identities = 21/182 (11%), Positives = 48/182 (26%), Gaps = 30/182 (16%)
Query: 248 VYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN-------QGKDKEA 300
+ L ++ + +A ++ + + W + +A
Sbjct: 10 IKTQLAMEYMRGQDYRQATASIEDALK--------SDPKNELAWLVRAEIYQYLKVNDKA 61
Query: 301 MQSYKSLMERNFRMTPATCNTLLEVLLKHEKK--EEAQALFEQMLDNHQPPNIQAVNSDT 358
+S++ + N L E+ A F++ L + P
Sbjct: 62 QESFRQALSIKPDSAEINNN--YGWFLCGRLNRPAESMAYFDKALADPTYPT----PYIA 115
Query: 359 FNIMVNECFKH-GKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKL 417
C G+F A K++ P A + + L +A+
Sbjct: 116 NLNKGI-CSAKQGQFGLAEAYLKRSLAAQPQFPPA-----FKELARTKMLAGQLGDADYY 169
Query: 418 LR 419
+
Sbjct: 170 FK 171
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 9e-04
Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 16/167 (9%)
Query: 292 FNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNI 351
++A S + ++ + + A E+ + ++AQ F Q L +P +
Sbjct: 19 MRGQDYRQATASIEDALKSDPKNELAWLV-RAEIYQYLKVNDKAQESFRQALS-IKPDSA 76
Query: 352 QAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAG-YNNIIARYCENEM 410
+ N N C + + +E++ F KA P + P N +
Sbjct: 77 EINN----NYGWFLCGRLNRPAESMAYFDKALADP-TYP---TPYIANLNKGICSAKQGQ 128
Query: 411 LEEAEKLLRE-ISTKSLSPD-VTTFRTLIDAYLKVERIDDALELFNR 455
AE L+ + + P F+ L + ++ DA F +
Sbjct: 129 FGLAEAYLKRSL---AAQPQFPPAFKELARTKMLAGQLGDADYYFKK 172
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 28/214 (13%), Positives = 58/214 (27%), Gaps = 27/214 (12%)
Query: 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFV--DAGRIGEAVDLLR 235
Y L Y G ++ R+ +E P S+ H V A + R
Sbjct: 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDP----SSADAHAALAVVFQTEMEPKLADEEYR 95
Query: 236 DMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN-- 293
L+ ++ V NN E+A + E + + N
Sbjct: 96 KALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLE------ASQDTLYPERSRVFENLG 148
Query: 294 -----QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQP 348
K +A + ++ + N + ++L K + A+ ++
Sbjct: 149 LVSLQMKKPAQAKEYFEKSLRLNRNQPSVALE-MADLLYKEREYVPARQYYDLFA----- 202
Query: 349 PNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382
N+ + + + A +
Sbjct: 203 -QGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 30/250 (12%), Positives = 68/250 (27%), Gaps = 61/250 (24%)
Query: 114 LIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRA-KRYDDAVALFKYFFDQA-DI 171
++ G+ + A R+A+ I P+ +A +A +++ A ++ +A
Sbjct: 47 YLQRGNTEQAKVPLRKAL--EIDPSSADAHAALAVVFQTEMEPKLADEEYR----KALAS 100
Query: 172 VPNIV-SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEA 230
NN ++ + +E + + P
Sbjct: 101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD-TLYPE----------RSRV------ 143
Query: 231 VDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEW 290
+ NL L + +A E F ++ L N
Sbjct: 144 ------------------FENLGLVSLQMKKPAQAKEYF----EKSLRL----NRNQPSV 177
Query: 291 WFN-------QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQML 343
+ + A Q Y + + + + E ++ A + Q L
Sbjct: 178 ALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQ-L 235
Query: 344 DNHQPPNIQA 353
P +++
Sbjct: 236 KRLYPGSLEY 245
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 4e-06
Identities = 44/254 (17%), Positives = 77/254 (30%), Gaps = 30/254 (11%)
Query: 210 SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELF 269
SS+ + H + G V G + L+ R D Y L G+L GN E+A
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGDQNPLKTDKGRDEARD--AYIQLGLGYLQRGNTEQAKVPL 60
Query: 270 D---ELKQRCLVYDGVVNA---TFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLL 323
E+ A F + + K A + Y+ + + R N
Sbjct: 61 RKALEIDPS---SADAHAALAVVFQT----EMEPKLADEEYRKALASDSRNARVLNN--Y 111
Query: 324 EVLLKHEKK-EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382
L +K+ EEA + + P S F + + K ++A E F+K+
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPE----RSRVFENLGLVSLQMKKPAQAKEYFEKS 167
Query: 383 GTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLRE-ISTKSLSPDVTTFRTLIDAYL 441
+++P + + A + + + I
Sbjct: 168 LRLNRNQPSV-----ALEMADLLYKEREYVPARQYYDLFAQGGGQNAR--SLLLGIRLAK 220
Query: 442 KVERIDDALELFNR 455
E D A +
Sbjct: 221 VFEDRDTAASYGLQ 234
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 5e-07
Identities = 21/161 (13%), Positives = 42/161 (26%), Gaps = 12/161 (7%)
Query: 117 AGDLDAASYLARQAVFSRIRPT-VFTCNAIIAAMYRAKRYDDAVALFKYFFDQA-DIVPN 174
D R AV R RP + A + + + P
Sbjct: 2 TADGPRELLQLRAAV--RHRPQDFVAWLMLADAELGMGDTTAGEMAVQ----RGLALHPG 55
Query: 175 IV-SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDL 233
+ L + + E + ++ + AP L DAG+ A
Sbjct: 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP--EHPGIALWLGHALEDAGQAEAAAAA 113
Query: 234 LRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQ 274
+ + L++ L + + L +++
Sbjct: 114 YTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRA 153
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 9/103 (8%)
Query: 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPT-VFTCNAIIAAMYRAKRYDDAVALFKYF 165
+ + GD A ++ + + P + + +R+ +A L +
Sbjct: 26 WLMLADAELGMGDTTAGEMAVQRGL--ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ-- 81
Query: 166 FDQA-DIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAP 206
QA D P L + D G+ + + R + P
Sbjct: 82 --QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 21/103 (20%)
Query: 364 NECFKHGKFSEAIETFKKA-GTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREIS 422
N +K F +A + KA P ++ YNN A Y E + E +
Sbjct: 16 NAAYKQKDFEKAHVHYDKAIELDPS------NITFYNNKAAVYFEEKKFAECV----QFC 65
Query: 423 TKSLS--PDVTTFRTLI--------DAYLKVERIDDALELFNR 455
K++ + LI +A+ K + A++ F+R
Sbjct: 66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHR 108
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 13/102 (12%)
Query: 364 NECFKHGKFSEAIETFKKA-GTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKL----- 417
N+ +K F A++ + KA P + + N A Y E + +L
Sbjct: 12 NDAYKKKDFDTALKHYDKAKELDPTNMTY------ITNQAAVYFEKGDYNKCRELCEKAI 65
Query: 418 -LREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVE 458
+ + + + + ++Y K E+ DA+ +N+ +
Sbjct: 66 EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 2e-06
Identities = 23/196 (11%), Positives = 56/196 (28%), Gaps = 10/196 (5%)
Query: 112 QSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMY-RAKRYDDAVALFKYFFDQAD 170
+ L DA + + + T T + A++Y + D A+
Sbjct: 73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQG----- 127
Query: 171 IVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEA 230
++ + ++D +++ + + ++ +A
Sbjct: 128 --DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDA 185
Query: 231 VDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEW 290
+ ++M + L+ N + + G E A + E + +
Sbjct: 186 YYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-DSGHPETLINLVVL 243
Query: 291 WFNQGKDKEAMQSYKS 306
+ GK E Y S
Sbjct: 244 SQHLGKPPEVTNRYLS 259
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 39/272 (14%), Positives = 79/272 (29%), Gaps = 32/272 (11%)
Query: 122 AASYLAR---QAVFSRIRPTVFTCNAIIAAMYRA----KRYDDAVALFKYFFDQADIVPN 174
+YLA+ V I+P+ + R D VA ++ V N
Sbjct: 41 YRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN 100
Query: 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLL 234
+ Y + D + + + + L R+ A L
Sbjct: 101 TTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKL-------DRLDLARKEL 153
Query: 235 RDMLSRQLGADSLVYNN---LISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWW 291
+ M D+ + +S L+ A +F E+ +C ++N
Sbjct: 154 KKMQ--DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACH- 210
Query: 292 FNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNH-QPPN 350
QG+ + A + ++++ N ++ + E Q+ D H P
Sbjct: 211 MAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270
Query: 351 IQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382
I+ + K F + + +
Sbjct: 271 IKEYRA-----------KENDFDRLVLQYAPS 291
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 36/215 (16%), Positives = 69/215 (32%), Gaps = 29/215 (13%)
Query: 147 AAMYRAKRYDDAVALFKYFFDQA-DIVPNIV-SYNNLINTYCDEGKVDEGMNVFRRIIET 204
+Y RYD A+ L F++A P + L T G V+ + + ++
Sbjct: 13 VQLYALGRYDAALTL----FERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR 68
Query: 205 AP--------VGPS-SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISG 255
P + + YR G + +A+ +L+D + ++
Sbjct: 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLV 127
Query: 256 FLNLGNLEKANELFD---ELKQRCLVYD--GVVNATFMEWWFNQGKDKEAMQSYKSLMER 310
+ LG +KA L+ + + + + G+ EA+ Y +E+
Sbjct: 128 YALLGERDKAEASLKQALALEDTPEIRSALAEL-------YLSMGRLDEALAQYAKALEQ 180
Query: 311 NFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN 345
+ LL K EEA +
Sbjct: 181 APKDLDLRVR-YASALLLKGKAEEAARAAALEHHH 214
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 8e-05
Identities = 34/234 (14%), Positives = 64/234 (27%), Gaps = 46/234 (19%)
Query: 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFV--DAGRIGEAVDLLR 235
L G+ D + +F R ++ P + G + A++ +
Sbjct: 8 PLRLGVQLYALGRYDAALTLFERALKENP----QDPEALYWLARTQLKLGLVNPALENGK 63
Query: 236 DMLSRQLGADSLVYNNL-----------ISGFLNLGNLEKANELFDELKQRCLVYDGVVN 284
+++R Y L G LE+A + VN
Sbjct: 64 TLVARTPR-YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLK----DAE----RVN 114
Query: 285 ATFMEWWFN-------QGKDKEAMQSY-KSLMERNFRMTPATCNTLLEVLLKHEKKEEAQ 336
+ G+ +A S ++L + P + L E+ L + +EA
Sbjct: 115 PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT---PEIRSALAELYLSMGRLDEAL 171
Query: 337 ALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKP 390
A + + L+ + D + GK EA
Sbjct: 172 AQYAKALE------QAPKDLDLRVRYASALLLKGKAEEAARAAALE---HHHHH 216
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 51/344 (14%), Positives = 94/344 (27%), Gaps = 89/344 (25%)
Query: 105 LNLHNRVQSLIRAGDLDAASYLARQA--VFSRIRPTVFTCNAIIAAMYRAK-RYDDAVAL 161
L L + L AGD A + A + T+ + + Y Y+ A+
Sbjct: 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQY 108
Query: 162 FKYFFDQA-DIVPNI-------VSYNNLINTYCDEGKVDEGMN-------VFRRIIETAP 206
K + ++ S NL NT G+ DE + R++ +
Sbjct: 109 HK----HDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS 164
Query: 207 VGPS----SNTYRHL----------TKGFVDAGRIGEAVDLLRDMLS--RQLG-----AD 245
G + N Y G + AV+ ++ L R LG
Sbjct: 165 EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR 224
Query: 246 SLVYNNLISGFLNLGNLEKANELFDELKQRCL-----VYD-----------GVVNATFME 289
+ NL + + LG+ + A E Q L D G
Sbjct: 225 A--CGNLGNTYYLLGDFQAAIEHH----QERLRIAREFGDRAAERRANSNLGNS------ 272
Query: 290 WWFNQGKDKEAMQSY-KSL-MERNFRMTPATCNTLL---EVLLKHEKKEEAQALFEQMLD 344
G+ ++A + Y ++L + + + A + L
Sbjct: 273 -HIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331
Query: 345 ------NHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382
+ + + N G A++ ++
Sbjct: 332 IAQELGDR--IGE----ARACWSLGNAHSAIGGHERALKYAEQH 369
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 50/343 (14%), Positives = 96/343 (27%), Gaps = 87/343 (25%)
Query: 155 YDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS--SN 212
+D + + C+ G G+ F+ I+ S
Sbjct: 31 HDGNSQQGSGSDGGSSMCL---ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSA 87
Query: 213 TYRHLTKGFVDAGRIGEAVDLLRDMLS--RQLG-----ADSLVYNNLISGFLNLGNLEKA 265
Y L + G +A+ + L+ + + A S NL + +G ++A
Sbjct: 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS--SGNLGNTLKVMGRFDEA 145
Query: 266 NELFDELKQRCL-----VYD-----------GVVNATFMEWWFNQGKDKEAMQSYKSLME 309
+R L + D G V + +GK K +
Sbjct: 146 AICC----ERHLTLARQLGDRLSEGRALYNLGNV-------YHAKGKHLGQRNPGKFGDD 194
Query: 310 RNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH 369
+T A +E +E L + D Q + N +
Sbjct: 195 VKEALTRA-----VEFY------QENLKLMRDLGDRGA----QG---RACGNLGNTYYLL 236
Query: 370 GKFSEAIETFKKA-------GTHPKSKPFAMDVAG-YNNIIARYCENEMLEEAEKLLREI 421
G F AIE ++ G +N+ + E+A + +
Sbjct: 237 GDFQAAIEHHQERLRIAREFGDRA-------AERRANSNLGNSHIFLGQFEDAAEHYK-- 287
Query: 422 STKSLS--------PDV-TTFRTLIDAYLKVERIDDALELFNR 455
++L+ + +L + Y + + A+E NR
Sbjct: 288 --RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 3e-06
Identities = 31/230 (13%), Positives = 76/230 (33%), Gaps = 25/230 (10%)
Query: 249 YNNLISGFLNLGNLEKANELFD---ELKQRCLVYDGVVNATFM--EWWFNQGKDKEAMQS 303
+ + L A + F + +++ D N + + + G A+ S
Sbjct: 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99
Query: 304 YKSLME-----RNFRMTPATCNTLLEVLLKHEKK-EEAQALFEQMLDNHQPPNIQAVNSD 357
++ ++ FR L E+L +A +E + + A+++
Sbjct: 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK 159
Query: 358 TFNIMVNECFKHGKFSEAIETFKKAGTH-PKSKPFAMDVAGY--NNIIARYCEN------ 408
F + G++ EA + + K ++ + Y + +
Sbjct: 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA 219
Query: 409 EMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLK--VERIDDALELFNRM 456
L+E + + S + ++LIDA + E++ + + F+
Sbjct: 220 RTLQEGQSEDPNFAD---SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 4e-06
Identities = 27/259 (10%), Positives = 68/259 (26%), Gaps = 35/259 (13%)
Query: 148 AMYRAKRYD-DAVALFKYFFDQA-DIVPNIV-SYNNLINTYCDEGKVDEGMNVFRRIIET 204
A+ Y +A +A + P +V ++N L Y +G V F +
Sbjct: 111 ALNVTPDYSPEAEV----LLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH 166
Query: 205 APVGPS----SNTYRHLTKGFVD--AGRIGEAVDLLRDMLSRQLGADSLVYNNL------ 252
S S R L D + + ++V + + + D + L
Sbjct: 167 CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLS 225
Query: 253 --ISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN-------QGKDKEAMQS 303
+ N ++A + + ++ + N + EA++
Sbjct: 226 LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDL-----HLNRATLHKYEESYGEALEG 280
Query: 304 YKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMV 363
+ + ++L + + + ++
Sbjct: 281 FSQAAALDPAWPEPQQR-EQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCG 339
Query: 364 NECFKHGKFSEAIETFKKA 382
+ ++ + K
Sbjct: 340 DGRYQSASGQKMTLELKPL 358
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 5e-06
Identities = 23/192 (11%), Positives = 58/192 (30%), Gaps = 4/192 (2%)
Query: 252 LISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN 311
I+ L + + L +R + V + + + +K + K
Sbjct: 51 GIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE 110
Query: 312 FRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGK 371
F+ + +LK E +++L+ N N + N ++G
Sbjct: 111 FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGY 170
Query: 372 FSEAIETFKKAGTHPKSKPFAMDVAG--YNNIIARYCENEMLEEAEKLLREISTKSLSPD 429
+ I+ F++ ++ + N + EE+ + + +S
Sbjct: 171 LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK--AIEISCR 228
Query: 430 VTTFRTLIDAYL 441
+ + + Y
Sbjct: 229 INSMALIGQLYY 240
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 5e-04
Identities = 22/139 (15%), Positives = 39/139 (28%), Gaps = 7/139 (5%)
Query: 327 LKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA-GTH 385
K ++ +E L + + K + I KK
Sbjct: 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ 145
Query: 386 PKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREI------STKSLSPDVTTFRTLIDA 439
++ N I Y EN L++ L +I + DV A
Sbjct: 146 LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA 205
Query: 440 YLKVERIDDALELFNRMVE 458
R +++L N+ +E
Sbjct: 206 LYLDSRYEESLYQVNKAIE 224
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-05
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
Query: 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDM 237
L + + +F ++ET P TY HL K + R +A+D
Sbjct: 10 RYALAQEHLKHDNASRALALFEELVETDP--DYVGTYYHLGKLYERLDRTDDAIDTYAQG 67
Query: 238 LS-RQLGADSLVYNNLISGFLNLGNLEKAN 266
+ + + L L LE +
Sbjct: 68 IEVAREEGTQKDLSELQDAKLKAEGLEHHH 97
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 2e-04
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 12/103 (11%)
Query: 347 QPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA-GTHPKSKPFAMDVAGYNNIIARY 405
+ P + T + E KH S A+ F++ T P V Y ++ Y
Sbjct: 2 EDPE----DPFTRYALAQEHLKHDNASRALALFEELVETDPD------YVGTYYHLGKLY 51
Query: 406 CENEMLEEAEKLLRE-ISTKSLSPDVTTFRTLIDAYLKVERID 447
+ ++A + I L DA LK E ++
Sbjct: 52 ERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLE 94
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 31/353 (8%), Positives = 88/353 (24%), Gaps = 29/353 (8%)
Query: 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRA-KRYDDAVALFKYF 165
+ + + + QA + P A +A + + +
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAH--GLTPAQVVAIASHDGGKQALETMQRLLPVL--- 249
Query: 166 FDQA-DIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD 223
QA + P+ +V+ + I V + V + P G
Sbjct: 250 -CQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPD--QVVAIASHGGGKQA 306
Query: 224 AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVV 283
+ + +L + + G L +++ + + +
Sbjct: 307 LETVQRLLPVLCQAHGLT-PDQVVAIASHDGGKQALETVQRLLPVLCQAHG--------L 357
Query: 284 NATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQML 343
+ + G K+A+++ + L+ + + + K+ + + +
Sbjct: 358 TPDQVVAIASNGGGKQALETVQRLLP-VLCQAHGLTPDQVVAIASNGGKQALETVQRLLP 416
Query: 344 DNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA-GTHPKSKPFAMDVAGYNNII 402
Q + + + G P V +
Sbjct: 417 VLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPA------QVVAIASHD 470
Query: 403 ARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNR 455
E +++ +L + + V + I + + L + +
Sbjct: 471 GGKQALETVQQLLPVLCQAHGLT-PDQVVAIASNIGGKQALATVQRLLPVLCQ 522
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 8e-05
Identities = 56/340 (16%), Positives = 95/340 (27%), Gaps = 78/340 (22%)
Query: 105 LNLHNRVQSLIRAGDLDAASYLARQA--VFSRIRPTVFTCNAIIAAMYRAK-RYDDAV-- 159
L L + L ++GD A A V + T+ + + Y Y A+
Sbjct: 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEY 65
Query: 160 -----ALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMN-------VFRRIIETAPV 207
L + DQ + NL NT G DE + + R + +
Sbjct: 66 HHHDLTLARTIGDQLGEA---KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122
Query: 208 GPSSN----TYRHL-------------TKGFVDAGRIGEAVDLLRDMLS--RQLGADSLV 248
+ Y + AVDL + LS LG +
Sbjct: 123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQ 182
Query: 249 ---YNNLISGFLNLGNLEKANELFDE-LKQRCLVYD-----------GVVNATFMEWWFN 293
+ NL + LGN A ++ L D G +
Sbjct: 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA-------YIF 235
Query: 294 QGKDKEAMQSY-KSL-MERNFRMTP---ATCNTLLEVLLKHEKKEEAQALFEQMLD---- 344
G+ + A + Y K+L + R + +C +L + E+A + L
Sbjct: 236 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295
Query: 345 --NHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382
+ + N G +A+ +K
Sbjct: 296 LKDR--IGE----GRACWSLGNAYTALGNHDQAMHFAEKH 329
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 9e-05
Identities = 25/177 (14%), Positives = 52/177 (29%), Gaps = 31/177 (17%)
Query: 249 YNNLISGFLNLGNLEKANELFDE-LKQRCLVYDGVVNATFMEWWFN-------QGKDKEA 300
Y + G +A L ++ +A ++ + G
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQVYD---------ADAFDVDVALHLGIAYVKTGAVDRG 61
Query: 301 MQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFN 360
+ + + L ++ +K + A L ++ + +N +
Sbjct: 62 TELLERSLADAPDNVKVATV-LGLTYVQVQKYDLAVPLLIKVAE------ANPINFNVRF 114
Query: 361 IMVNECFKHGKFSEAIETFKKAGTHPKSKP-FAMDVAGYNNIIARYCENEMLEEAEK 416
+ G+F EAI++FK A +P + I Y + EEA
Sbjct: 115 RLGVALDNLGRFDEAIDSFKIA---LGLRPNEGK---VHRAIAFSYEQMGRHEEALP 165
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 42.4 bits (101), Expect = 2e-04
Identities = 41/246 (16%), Positives = 60/246 (24%), Gaps = 101/246 (41%)
Query: 147 AAMYRAKRYDDAVALFKYFFDQA-DIVPNIV-SYNNLINTYCDEGKVDEGMNVFRRIIET 204
+ +A RY AV L + Q D V +L Y G VD G + R +
Sbjct: 16 ISHAKAGRYSQAVMLLE----QVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD 71
Query: 205 APVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEK 264
AP V L ++ + +
Sbjct: 72 AP-------------DNVKV------------------------ATVLGLTYVQVQKYDL 94
Query: 265 ANELFDE-LKQRCLVYDGVVNATFMEWWFN-------QGKDKEAMQSYKSLMERNFRMTP 316
A L + + N F G+ EA+ S+K
Sbjct: 95 AVPLLIKVAE---------ANPINFNVRFRLGVALDNLGRFDEAIDSFK----------- 134
Query: 317 ATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAI 376
AL L PN + + G+ EA+
Sbjct: 135 -------------------IALG---LR----PN----EGKVHRAIAFSYEQMGRHEEAL 164
Query: 377 ETFKKA 382
FKKA
Sbjct: 165 PHFKKA 170
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 40.4 bits (96), Expect = 3e-04
Identities = 31/168 (18%), Positives = 63/168 (37%), Gaps = 60/168 (35%)
Query: 148 AMYRAKRYDDAVALFKYFFDQA-DIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETA 205
A Y+ YD+A+ ++ +A ++ P ++ NL N Y +G DE + +++ +E
Sbjct: 10 AYYKQGDYDEAIE----YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 206 PVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKA 265
P +A + NL + + G+ ++A
Sbjct: 66 P-------------RSAEA------------------------WYNLGNAYYKQGDYDEA 88
Query: 266 NELFDE-LKQRCLVYDGVVNATFMEWWFN-------QGKDKEAMQSYK 305
E + + L+ ++ E W+N QG EA++ Y+
Sbjct: 89 IEYYQKALE---------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 4e-04
Identities = 25/162 (15%), Positives = 52/162 (32%), Gaps = 12/162 (7%)
Query: 187 DEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA-- 244
G+ ++ V R IE + + + G+ +
Sbjct: 225 GIGQKEKAKKVVERGIEMSD---GMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVF 281
Query: 245 ---DSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKE-A 300
L+ N ++ L LE +LF EL + + F+E+ +
Sbjct: 282 SKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEY--YATGSRATP 339
Query: 301 MQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQM 342
+ S + + + LL+ +E A+ALF+++
Sbjct: 340 YNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRL 380
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 4e-04
Identities = 36/234 (15%), Positives = 83/234 (35%), Gaps = 18/234 (7%)
Query: 188 EGKVDEGMNVFRRIIETAPVGPSSNT-YRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADS 246
+ DE N++ R I T + Y + + + +L+ + +
Sbjct: 77 KLFSDEAANIYERAISTLL--KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT 134
Query: 247 LVYNNLISGFLNLGNLEKANELFDELKQRC-LVYDGVVNATFMEWWFNQGKDKE-AMQSY 304
LVY + ++ +F + ++ + V A ME+ KDK A + +
Sbjct: 135 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY--YCSKDKSVAFKIF 192
Query: 305 KSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVN 364
+ +++ + P ++ L + + LFE++L + P ++ + + +
Sbjct: 193 ELGLKKYGDI-PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG--EIWARFLA 249
Query: 365 ECF--KHGKFSEAIETFKKA----GTHPKSKPFAMDVAGYNNIIARYCENEMLE 412
F G + ++ K+ + K A+ V Y + C L+
Sbjct: 250 --FESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFMDLYPCSASELK 301
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 5e-04
Identities = 23/204 (11%), Positives = 66/204 (32%), Gaps = 17/204 (8%)
Query: 260 GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATC 319
++A +++ L + ++ + ++ ++ K ++ Y L+
Sbjct: 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVY 137
Query: 320 NTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETF 379
++ + E + + +F++ ++ + + V + E + S A + F
Sbjct: 138 IQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM-----EYYCSKDKSVAFKIF 192
Query: 380 KKA-GTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLID 438
+ + + V Y Y + + ++L E S S +
Sbjct: 193 ELGLKKYGDIPEY---VLAY----IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 245
Query: 439 AYLKVER----IDDALELFNRMVE 458
+L E + L++ R
Sbjct: 246 RFLAFESNIGDLASILKVEKRRFT 269
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 4e-04
Identities = 13/95 (13%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Query: 154 RYDDAVALFKYFFDQADIVPNIV-SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSN 212
AV ++ ++ Y L +T+ G+ + V ++ P +
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSL 247
+ + + GR + V+LL +++ +++
Sbjct: 65 VFYAMV--LYNLGRYEQGVELLLKIIAETSDDETI 97
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 5e-04
Identities = 11/91 (12%), Positives = 22/91 (24%), Gaps = 7/91 (7%)
Query: 292 FNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNI 351
+ GK +A + +++L + L E+A + +
Sbjct: 29 YQAGKWDDAQKIFQALCMLDHYDARYFLG-LGACRQSLGLYEQALQSYSYGAL------M 81
Query: 352 QAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382
+ G A F A
Sbjct: 82 DINEPRFPFHAAECHLQLGDLDGAESGFYSA 112
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 55/339 (16%), Positives = 93/339 (27%), Gaps = 80/339 (23%)
Query: 107 LHNRVQSLIRAGDLDAASYLARQA--VFSRIRPTVFTCNAIIAAMYRAK-RYDDAVALFK 163
L + L ++GD A A V + T+ + + Y Y A+
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71
Query: 164 YFFDQA-DIVPNI-------VSYNNLINTYCDEGKVDEGMN-------VFRRIIETAPVG 208
+ I + NL NT G DE + + R + +
Sbjct: 72 ----HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 127
Query: 209 PSSN----TYRHLTKGFVDAGRIG-------------EAVDLLRDMLS--RQLGADSLV- 248
+ Y K F G AVD + LS LG +
Sbjct: 128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQG 187
Query: 249 --YNNLISGFLNLGNLEKANELFDE-LKQRCLVYD-----------GVVNATFMEWWFNQ 294
+ NL + LGN A ++ L D G +
Sbjct: 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA-------YIFL 240
Query: 295 GKDKEAMQSY-KSL-MERNFRMTP---ATCNTLLEVLLKHEKKEEAQALFEQMLD----- 344
G+ + A + Y K+L + R + +C +L + E+A + L
Sbjct: 241 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300
Query: 345 -NHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382
+ + N G +A+ +K
Sbjct: 301 NDR--IGE----GRACWSLGNAYTALGNHDQAMHFAEKH 333
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 851 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.93 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.92 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.92 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.91 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.88 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.87 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.86 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.84 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.79 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.76 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.74 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.74 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.74 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.74 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.73 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.72 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.72 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.72 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.72 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.71 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.7 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.7 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.7 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.69 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.69 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.69 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.68 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.68 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.67 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.67 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.67 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.67 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.67 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.65 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.62 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.6 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.59 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.59 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.58 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.58 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.58 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.57 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.57 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.57 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.57 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.55 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.55 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.55 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.54 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.54 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.45 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.45 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.43 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.41 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.4 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.38 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.36 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.36 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.35 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.35 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.33 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.3 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.3 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.27 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.27 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.24 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.23 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.23 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.22 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.2 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.2 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.19 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.19 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.19 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.17 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.16 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.16 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.16 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.15 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.14 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.14 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.11 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.11 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.11 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.1 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.07 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.07 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.06 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.0 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.0 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.0 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.98 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.98 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.97 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.97 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.96 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.93 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.93 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.92 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.92 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.92 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.9 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.89 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.89 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.89 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.88 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.87 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.86 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.85 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.84 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.84 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.83 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.83 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.83 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.83 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.81 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.81 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.8 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.79 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.79 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.78 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.78 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.77 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.76 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.76 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.75 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.71 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.71 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.69 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.67 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.66 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.65 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.65 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.64 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.62 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.58 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.57 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.56 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.56 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.54 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.53 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.53 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.52 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.51 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.51 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.51 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.5 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.49 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.48 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.46 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.44 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.44 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.44 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.43 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.43 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.4 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.39 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.38 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.37 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.36 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.32 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.28 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.26 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.21 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.09 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.04 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.02 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.01 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.01 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.01 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.99 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.96 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.96 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.93 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.9 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.88 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.76 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.75 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.71 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.69 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.67 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.59 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.54 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.44 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.41 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.36 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.31 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.3 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 97.25 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.25 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 97.25 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.24 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.21 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.14 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.14 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 97.11 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.98 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.97 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.93 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.85 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.84 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.83 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 96.73 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.69 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.66 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.65 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.58 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.54 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.53 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 96.46 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 96.23 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.22 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 96.13 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.94 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.86 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.79 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.64 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 95.21 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 95.2 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 95.13 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 95.11 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.8 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 94.77 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 94.7 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.62 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.53 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 94.52 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.97 | |
| 3iot_A | 449 | Maltose-binding protein, huntingtin fusion protei; | 92.09 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.85 | |
| 3iot_A | 449 | Maltose-binding protein, huntingtin fusion protei; | 91.29 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.25 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.8 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 90.5 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 90.47 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 90.25 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.18 | |
| 3f3f_C | 570 | Nucleoporin NUP85; structural protein, protein com | 89.6 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 88.98 | |
| 3mv2_A | 325 | Coatomer subunit alpha; vesicular membrane coat CO | 88.97 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 88.82 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 88.73 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 88.24 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.06 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.9 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 82.92 | |
| 3eiq_C | 358 | Programmed cell death protein 4; PDCD4, anti-oncog | 81.79 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=373.65 Aligned_cols=441 Identities=8% Similarity=-0.024 Sum_probs=386.7
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
..+..++..+.+.|++++|+.+|++++.. .|+..+++.++.+|.+.|++++|+.+|++++.. ..+..+++.++.+
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFC 159 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHH
Confidence 34678899999999999999999999854 467889999999999999999999999988542 4689999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhC--------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETA--------------PVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYN 250 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~--------------~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~ 250 (851)
|.+.|++++|+++|+++.... +...+..+|+.++.+|.+.|++++|+++|++|++.+.. +...+.
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHH
Confidence 999999999999999643221 11235789999999999999999999999999988654 555544
Q ss_pred HH--------------------------------------HHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHH
Q 038852 251 NL--------------------------------------ISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWF 292 (851)
Q Consensus 251 ~L--------------------------------------i~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~ 292 (851)
.+ +.+|.+.|++++|+++|+++.+. ..+..++..++.+|.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 43 45566789999999999999876 358899999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCCh
Q 038852 293 NQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKF 372 (851)
Q Consensus 293 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~ 372 (851)
+.|++++|+++|+++++.+.. +..+|+.++.+|.+.|++++|+++|+++++.. |+ +..+++.++.+|.+.|++
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH--PE----KAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT----SHHHHHHHHHHHHHTTCH
T ss_pred HhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--cc----cHHHHHHHHHHHHHhccH
Confidence 999999999999999988754 56789999999999999999999999999753 33 788999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 038852 373 SEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALEL 452 (851)
Q Consensus 373 ~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~ 452 (851)
++|+++|+++....+. +..+|+.++.+|.+.|++++|+++|+++.+.+. .+..+|+.++.+|.+.|++++|+++
T Consensus 390 ~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 463 (597)
T 2xpi_A 390 SEARRYFSKSSTMDPQ-----FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEY 463 (597)
T ss_dssp HHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999775444 788999999999999999999999999998643 4788999999999999999999999
Q ss_pred HHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038852 453 FNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEK----DPKPD--FLIYDVVVRGLCNEGLFDMSKDIVDQM 526 (851)
Q Consensus 453 ~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~----~~~pd--~~~~~~ll~a~~~~g~~~~A~~~~~~m 526 (851)
|+++++.+.. +...+..++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|+++|+++
T Consensus 464 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 464 LQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999987654 4556677999999999999999999999876 66777 789999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCC
Q 038852 527 MKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAP 568 (851)
Q Consensus 527 ~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~ 568 (851)
++.+ +.+..++..++.+|.+.|++++|.++|+++.+..|+.
T Consensus 543 ~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 543 LLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 9876 4578899999999999999999999999998877654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=348.95 Aligned_cols=419 Identities=10% Similarity=0.012 Sum_probs=364.5
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC--------------C
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQA--------------D 170 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--------------~ 170 (851)
..+..++..+.+.|++++|+.+|++++.. ..+..+++.++.+|.+.|++++|+++|+++.... +
T Consensus 118 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (597)
T 2xpi_A 118 NDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGG 195 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSS
T ss_pred hHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccc
Confidence 56678899999999999999999998643 6789999999999999999999999999643322 2
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH---------------------------------
Q 038852 171 IVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL--------------------------------- 217 (851)
Q Consensus 171 ~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L--------------------------------- 217 (851)
...+..+|+.++.+|.+.|++++|+++|+++++.++. +..++..+
T Consensus 196 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 273 (597)
T 2xpi_A 196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK--CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273 (597)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch--hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence 2335889999999999999999999999999998766 55554444
Q ss_pred -----HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHH
Q 038852 218 -----TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWF 292 (851)
Q Consensus 218 -----i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~ 292 (851)
+.+|.+.|++++|+++|+++.+. ..+..+|+.++.+|.+.|++++|+++|+++++.+.. +..++..++.+|.
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLH 350 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHH
Confidence 44556788999999999999876 358999999999999999999999999999988765 7889999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCCh
Q 038852 293 NQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKF 372 (851)
Q Consensus 293 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~ 372 (851)
+.|++++|+++|+++++.. ..+..+|+.++.+|.+.|++++|+++|+++++.. |+ +..+|+.++.+|.+.|++
T Consensus 351 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~g~~ 423 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQ----FGPAWIGFAHSFAIEGEH 423 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHHTCH
T ss_pred HhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHcCCH
Confidence 9999999999999999765 3567899999999999999999999999999853 32 788999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 038852 373 SEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALEL 452 (851)
Q Consensus 373 ~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~ 452 (851)
++|+++|+++....+. +..+|+.++.+|.+.|++++|+++|+++.+... .+..+|+.++.+|.+.|++++|+++
T Consensus 424 ~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 497 (597)
T 2xpi_A 424 DQAISAYTTAARLFQG-----THLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINH 497 (597)
T ss_dssp HHHHHHHHHHHHTTTT-----CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999876554 788899999999999999999999999987643 3789999999999999999999999
Q ss_pred HHHHHHc----CCccc--hhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038852 453 FNRMVES----GLRVV--VSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQM 526 (851)
Q Consensus 453 ~~~m~~~----~~~~~--~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m 526 (851)
|+++++. +..++ ...+..++.+|.+.|++++|+++|+++.+.+.. +..+|..++.+|.+.|++++|+++|+++
T Consensus 498 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN-DANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999986 44555 677788999999999999999999999987533 8899999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHH
Q 038852 527 MKYGVGITPALQDFVRETF 545 (851)
Q Consensus 527 ~~~g~~~~~~~~~~L~~~~ 545 (851)
++.+ +.+...+..+..+|
T Consensus 577 l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 577 LAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHC-TTCHHHHHHHHHTT
T ss_pred HhcC-CCChHHHHHHHHHH
Confidence 9865 23455666665554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-29 Score=281.68 Aligned_cols=381 Identities=15% Similarity=0.110 Sum_probs=223.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 038852 147 AAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGR 226 (851)
Q Consensus 147 ~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~ 226 (851)
..+.+.|++++|++.|+++++..+ .+...+..+..++...|++++|..+++.+++.++. +..+|..++.+|.+.|+
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~--~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL--LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHCCC
Confidence 344455555555555555544322 23344455555555555555555555555555433 45555555555555555
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 227 IGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKS 306 (851)
Q Consensus 227 ~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 306 (851)
+++|+++|+++++.... +..+|..++.+|.+.|++++|++.|+++++.+.. +..++..+..++...|++++|+++|++
T Consensus 83 ~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555554333 4445555555555555555555555555554433 344455555555555666666666655
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCC
Q 038852 307 LMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHP 386 (851)
Q Consensus 307 ~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~ 386 (851)
+++.++ .+..+|+.++.++...|++++|++.|+++++.+ |+ +...+..++.++...|++++|+..|+++....
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 233 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PN----FLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 555432 234566666666666666666666666666643 22 45666666666666677777776666665544
Q ss_pred CCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchh
Q 038852 387 KSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVS 466 (851)
Q Consensus 387 ~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 466 (851)
+. +..+|..++.+|...|++++|++.|+++++... .+..+|..++.+|.+.|++++|+++|+++++.... +..
T Consensus 234 p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 306 (388)
T 1w3b_A 234 PN-----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HAD 306 (388)
T ss_dssp TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHH
T ss_pred cC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHH
Confidence 43 566666666677777777777777776665422 24556666777777777777777777777665432 333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038852 467 FGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFG 546 (851)
Q Consensus 467 ~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~ 546 (851)
.+..++.++...|++++|+++|+++++... .+..++..++.+|.+.|++++|+++|+++++.. +.....+..++.++.
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 307 SLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHH
Confidence 444466667777777777777777766532 245666677777777777777777777776643 234455555555555
Q ss_pred hcC
Q 038852 547 KAG 549 (851)
Q Consensus 547 ~~G 549 (851)
+.|
T Consensus 385 ~~~ 387 (388)
T 1w3b_A 385 EMQ 387 (388)
T ss_dssp HTC
T ss_pred Hcc
Confidence 444
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-30 Score=282.82 Aligned_cols=384 Identities=18% Similarity=0.160 Sum_probs=339.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 038852 109 NRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDE 188 (851)
Q Consensus 109 ~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~ 188 (851)
.++..+.+.|++++|+.++++++... +.+...+..+...+...|++++|+.+++.+++... .+..+|..++.+|.+.
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p--~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP--LLAEAYSNLGNVYKER 80 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHC
Confidence 35678899999999999999988765 44667788888889999999999999999987643 5788999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038852 189 GKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANEL 268 (851)
Q Consensus 189 g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~ 268 (851)
|++++|++.|+++++.++. +..+|..++.++...|++++|++.|+++++.... +..++..++.+|...|++++|+++
T Consensus 81 g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPD--FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHH
Confidence 9999999999999998766 7789999999999999999999999999998665 677888999999999999999999
Q ss_pred HHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 038852 269 FDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQP 348 (851)
Q Consensus 269 ~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~ 348 (851)
|+++++.... +..++..++.+|.+.|++++|++.|+++++.++ .+...|..++.++...|++++|+..|++++...
T Consensus 158 ~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-- 233 (388)
T 1w3b_A 158 YLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-- 233 (388)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Confidence 9999988665 678999999999999999999999999999875 356788999999999999999999999999853
Q ss_pred CCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038852 349 PNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSP 428 (851)
Q Consensus 349 p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 428 (851)
|+ +..++..++.+|.+.|++++|++.|+++....+. +..+|..++.+|.+.|++++|+++|+++++.. ..
T Consensus 234 p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 303 (388)
T 1w3b_A 234 PN----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-----FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PT 303 (388)
T ss_dssp TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-----CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TT
T ss_pred cC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cc
Confidence 43 7889999999999999999999999999887655 67889999999999999999999999999863 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 038852 429 DVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVR 508 (851)
Q Consensus 429 d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~ 508 (851)
+..+|..++.+|.+.|++++|+++|+++++.... +...+..++.+|.+.|++++|+++|+++++.... +...|..+..
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~ 381 (388)
T 1w3b_A 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 381 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHhHHH
Confidence 7889999999999999999999999999987643 4455566899999999999999999999986443 5667777777
Q ss_pred HHHhcC
Q 038852 509 GLCNEG 514 (851)
Q Consensus 509 a~~~~g 514 (851)
.+...|
T Consensus 382 ~~~~~~ 387 (388)
T 1w3b_A 382 TLKEMQ 387 (388)
T ss_dssp HHHHTC
T ss_pred HHHHcc
Confidence 766655
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-25 Score=259.30 Aligned_cols=404 Identities=12% Similarity=0.062 Sum_probs=325.9
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
.+......+.+.|++++|+.+|++++... |+..+|..++.+|.+.|++++|+..|+++++..+ .+..+|..++.+|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP--DYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh--HHHHHHHHHHHHH
Confidence 46778899999999999999999999876 5899999999999999999999999999988643 4678899999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------------------
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR------------------------- 240 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~------------------------- 240 (851)
...|++++|+..|+++++.++. +......++..+........+.+.+..+...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDF--NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSC--CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHhhHHHHHHHHHHHHhcCCC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999988754 4334444444444333333332222111000
Q ss_pred ----------CC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----c--CC------ccchhhHH
Q 038852 241 ----------QL---------GADSLVYNNLISGFLN---LGNLEKANELFDELKQ-----R--CL------VYDGVVNA 285 (851)
Q Consensus 241 ----------g~---------~pd~~~~~~Li~~~~~---~g~~~~A~~~~~~~~~-----~--~~------~~d~~~~~ 285 (851)
.. ..+...+..++..+.. .|++++|+.+|+++++ . .. ..+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 00 1125556666666665 8999999999999988 3 11 22467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHH
Q 038852 286 TFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNE 365 (851)
Q Consensus 286 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~ 365 (851)
.++.++...|++++|+++|+++++.+.. ..++..++.+|...|++++|+++|++++.... + +..++..++.+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~----~~~~~~~l~~~ 313 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS--N----NSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT--T----CTHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc--C----CHHHHHHHHHH
Confidence 8899999999999999999999998766 78899999999999999999999999988533 2 67899999999
Q ss_pred HHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 038852 366 CFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVER 445 (851)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~ 445 (851)
|...|++++|+.+|+++....+. +...+..++.+|...|++++|+.+|+++.+.. ..+..+|..++.+|.+.|+
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDPE-----NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKND 387 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSS-----CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCC
Confidence 99999999999999999876555 66789999999999999999999999998753 2357789999999999999
Q ss_pred HHHHHHHHHHHHHcCCccc-----hhHHHHHHHHHHH---cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH
Q 038852 446 IDDALELFNRMVESGLRVV-----VSFGTKVFNELIT---KGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFD 517 (851)
Q Consensus 446 ~~~A~~~~~~m~~~~~~~~-----~~~~~~L~~~~~~---~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~ 517 (851)
+++|+.+|+++++...... ...+..++.+|.. .|++++|+++|+++++.... +..++..+..+|...|+++
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHH
Confidence 9999999999987643322 2255568899999 99999999999999886533 6788889999999999999
Q ss_pred HHHHHHHHHHHcC
Q 038852 518 MSKDIVDQMMKYG 530 (851)
Q Consensus 518 ~A~~~~~~m~~~g 530 (851)
+|+++|+++++..
T Consensus 467 ~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 467 EAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999865
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-25 Score=253.01 Aligned_cols=374 Identities=9% Similarity=-0.005 Sum_probs=293.0
Q ss_pred CccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 038852 104 RLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLIN 183 (851)
Q Consensus 104 ~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~ 183 (851)
...+..++..+.+.|++++|+..+++++... +.+..+|..++.+|.+.|++++|+..|+++++..+ .+......++.
T Consensus 39 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~ 115 (514)
T 2gw1_A 39 PVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD--FNDASIEPMLE 115 (514)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS--CCGGGTHHHHH
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CccchHHHHHH
Confidence 3467788999999999999999999999876 45778999999999999999999999999987654 23333333333
Q ss_pred HHHHcCChHHHHHHHHHHH----------------------------------HhCCC---------CCCHHHHHHHHHH
Q 038852 184 TYCDEGKVDEGMNVFRRII----------------------------------ETAPV---------GPSSNTYRHLTKG 220 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~----------------------------------~~~~~---------~p~~~~~~~Li~~ 220 (851)
.+........+.+.+..+. ..... ..+...+..++.+
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195 (514)
T ss_dssp HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence 3333222222222221110 00000 0125556666666
Q ss_pred HHH---cCCHHHHHHHHHHHHh-----c--CC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhH
Q 038852 221 FVD---AGRIGEAVDLLRDMLS-----R--QL------GADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVN 284 (851)
Q Consensus 221 ~~~---~g~~~~A~~l~~~m~~-----~--g~------~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~ 284 (851)
+.. .|++++|+++|+++++ . .. ..+..++..++.++...|++++|+.+|+++++.+.. ..++
T Consensus 196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~ 273 (514)
T 2gw1_A 196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSY 273 (514)
T ss_dssp HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHH
T ss_pred HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHH
Confidence 665 8999999999999988 3 11 113567888999999999999999999999988765 8888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHH
Q 038852 285 ATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVN 364 (851)
Q Consensus 285 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~ 364 (851)
..++.+|...|++++|+++|+++++.+.. +..+|..++.+|...|++++|+.+|+++++.... +..++..++.
T Consensus 274 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~ 346 (514)
T 2gw1_A 274 IYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE------NIFPYIQLAC 346 (514)
T ss_dssp HHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS------CSHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh------hHHHHHHHHH
Confidence 89999999999999999999999987653 4468888999999999999999999999985433 6779999999
Q ss_pred HHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHH
Q 038852 365 ECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLS-PD----VTTFRTLIDA 439 (851)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~~~~~Ll~~ 439 (851)
+|...|++++|+.+|+++....+. +..+|..++.+|...|++++|+.+|+++.+.... ++ ..+|..++.+
T Consensus 347 ~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 347 LAYRENKFDDCETLFSEAKRKFPE-----APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HTTTTTCHHHHHHHHHHHHHHSTT-----CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHccc-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 999999999999999998776554 5678899999999999999999999998764211 11 3488999999
Q ss_pred HHH---cCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 038852 440 YLK---VERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKD 495 (851)
Q Consensus 440 ~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~ 495 (851)
|.. .|++++|+++|+++++.+... ...+..++.+|...|++++|+++|+++++..
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKLDPRS-EQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhhhcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 999 999999999999999876443 4455568899999999999999999998864
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-24 Score=245.18 Aligned_cols=311 Identities=15% Similarity=0.222 Sum_probs=243.2
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 137 PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRH 216 (851)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~ 216 (851)
.+...+..++..|.+.|++++|+.+|+++++... .+..+|..++.+|...|++++|+.+|+++++.++. +..+|..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 99 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD--FTAARLQ 99 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--cHHHHHH
Confidence 4567888889999999999999999999887533 46888899999999999999999999999988766 7788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCccch
Q 038852 217 LTKGFVDAGRIGEAVDLLRDMLSRQLGADS---LVYNNL------------ISGFLNLGNLEKANELFDELKQRCLVYDG 281 (851)
Q Consensus 217 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~~~~~L------------i~~~~~~g~~~~A~~~~~~~~~~~~~~d~ 281 (851)
++.+|.+.|++++|+++|+++++.... +. .++..+ +..|...|++++|+++|+++++.... +.
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 177 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DA 177 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Ch
Confidence 999999999999999999999887543 44 555555 44588889999999999988877654 67
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 038852 282 VVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNI 361 (851)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~ 361 (851)
.++..++.+|.+.|++++|+++|+++++.+. .+..+|..++.+|...|++++|+.+|++++... |+ +...+..
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~----~~~~~~~ 250 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QD----HKRCFAH 250 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----CHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC----hHHHHHH
Confidence 7888888899999999999999998887754 356788889999999999999999999988743 32 4555544
Q ss_pred H------------HHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038852 362 M------------VNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPD 429 (851)
Q Consensus 362 L------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 429 (851)
+ +.+|.+.|++++|+++|+++....+... ......|..++.++.+.|++++|+.+++++++.. ..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~ 328 (450)
T 2y4t_A 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIA-EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDN 328 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH-HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccc
Confidence 4 7778888888888888888766543310 0003467778888888888888888888877642 235
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q 038852 430 VTTFRTLIDAYLKVERIDDALELFNRMVESGLR 462 (851)
Q Consensus 430 ~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~ 462 (851)
..+|..++.+|...|++++|+++|+++++....
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 777888888888888888888888888876543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-24 Score=244.73 Aligned_cols=347 Identities=11% Similarity=0.118 Sum_probs=280.2
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 158 AVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDM 237 (851)
Q Consensus 158 A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m 237 (851)
+...|.+++... ..+...|..++..|.+.|++++|+.+|+++++.++. +..+|..++.+|...|++++|+++|+++
T Consensus 11 ~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 11 VDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334444444322 235778999999999999999999999999998765 7899999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccch---hhHHHH------------HHHHHHcCCHHHHHH
Q 038852 238 LSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDG---VVNATF------------MEWWFNQGKDKEAMQ 302 (851)
Q Consensus 238 ~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~---~~~~~l------------i~~~~~~g~~~~A~~ 302 (851)
++.+.. +..++..++.+|.+.|++++|+++|+++++.+.. +. ..+..+ +..+.+.|++++|++
T Consensus 87 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 87 IQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 998766 7899999999999999999999999999987654 33 444444 455899999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 303 SYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 303 l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
+|+++++... .+..++..++.+|.+.|++++|+++|+++++.... +..++..++.+|...|++++|+.+|+++
T Consensus 165 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 165 FLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKND------NTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999998764 46688999999999999999999999999885332 7889999999999999999999999999
Q ss_pred ccCCCCCCCccCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCC
Q 038852 383 GTHPKSKPFAMDVAGYNNI------------IARYCENEMLEEAEKLLREISTKSLSPD-----VTTFRTLIDAYLKVER 445 (851)
Q Consensus 383 ~~~~~~~~~~~d~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~~~~~Ll~~~~~~g~ 445 (851)
....+. +...+..+ +.+|.+.|++++|+++|+++++. .|+ ..+|..++.++.+.|+
T Consensus 238 ~~~~p~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 238 LKLDQD-----HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHCTT-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHhCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCC
Confidence 766554 55555555 88899999999999999999875 334 4578889999999999
Q ss_pred HHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH------------HHhc
Q 038852 446 IDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRG------------LCNE 513 (851)
Q Consensus 446 ~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a------------~~~~ 513 (851)
+++|+.+|+++++.... +...+..++.+|...|++++|++.|+++++.... +..++..+..+ |...
T Consensus 311 ~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~l 388 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKIL 388 (450)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGS
T ss_pred HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHh
Confidence 99999999999987643 3455556899999999999999999999986443 55666666533 3333
Q ss_pred C-----ChHHHHHHHHHH
Q 038852 514 G-----LFDMSKDIVDQM 526 (851)
Q Consensus 514 g-----~~~~A~~~~~~m 526 (851)
| +.+++.+.|+++
T Consensus 389 g~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 389 GVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp CSSTTCCTTHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHH
Confidence 4 556777777763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-24 Score=249.24 Aligned_cols=402 Identities=13% Similarity=0.091 Sum_probs=282.1
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
..+..+...+.+.|++++|+.+|++++... +.+..+|..++.+|.+.|++++|++.|+++++..+ .+..+|..++.+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP--DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--chHHHHHHHHHH
Confidence 456778889999999999999999988775 44788888999999999999999999999887643 467788899999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCCHH-----------
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ------LGADSL----------- 247 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g------~~pd~~----------- 247 (851)
|...|++++|++.|+ .+...+. .....+..+...+...+|++++++++... ..++..
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGD-----FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHcCCHHHHHHHHH-HHhcCCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999996 4443322 22333455666667788999998886641 111221
Q ss_pred -------------------HHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCccc------hhhHHHHHHHHHHc
Q 038852 248 -------------------VYNNLISGFLNL--------GNLEKANELFDELKQRCLVYD------GVVNATFMEWWFNQ 294 (851)
Q Consensus 248 -------------------~~~~Li~~~~~~--------g~~~~A~~~~~~~~~~~~~~d------~~~~~~li~~~~~~ 294 (851)
....+...+... |++++|+.+|+++++...... ..++..+...+...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc
Confidence 122222222211 367778888887776654411 22456666777778
Q ss_pred CCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHH
Q 038852 295 GKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSE 374 (851)
Q Consensus 295 g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~ 374 (851)
|++++|+++|+++++.+ ++..+|..++.+|...|++++|+++|+++++.... +..++..++.+|...|++++
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE------YPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC------CHHHHHHHHHHHHhcCCHHH
Confidence 88888888888887764 45777777888888888888888888888775332 67778888888888888888
Q ss_pred HHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038852 375 AIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFN 454 (851)
Q Consensus 375 A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~ 454 (851)
|+++|+++....+. +...|..++.+|...|++++|+.+|+++++.. ..+..+|..++.+|...|++++|+++|+
T Consensus 329 A~~~~~~a~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 329 AKEDFQKAQSLNPE-----NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp HHHHHHHHHHHCTT-----CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 88888887765444 55677778888888888888888888877653 2356677778888888888888888888
Q ss_pred HHHHcCCcc-----chhHHHHHHHHHHHc----------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 038852 455 RMVESGLRV-----VVSFGTKVFNELITK----------GKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMS 519 (851)
Q Consensus 455 ~m~~~~~~~-----~~~~~~~L~~~~~~~----------g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A 519 (851)
++++.+... ....+..+..+|... |++++|+.+|+++++.... +..++..+..+|...|++++|
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHH
Confidence 877643211 122223345666666 8888888888888776433 567777788888888888888
Q ss_pred HHHHHHHHHcC
Q 038852 520 KDIVDQMMKYG 530 (851)
Q Consensus 520 ~~~~~~m~~~g 530 (851)
+++|+++++..
T Consensus 482 ~~~~~~al~~~ 492 (537)
T 3fp2_A 482 IELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 88888887754
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-24 Score=248.64 Aligned_cols=405 Identities=12% Similarity=0.092 Sum_probs=319.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
...|..++..+.+.|++++|+++|+++++..+ .+..+|..++.+|...|++++|++.|+++++.++. +..+|..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD--HSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--hHHHHHHHH
Confidence 46778899999999999999999999988653 47889999999999999999999999999999876 888999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----------------------
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRC---------------------- 276 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~---------------------- 276 (851)
.++...|++++|++.|+ .+..... .....+..+...+..++|+.++++++...
T Consensus 101 ~~~~~~g~~~~A~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLS-VLSLNGD----FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHHcCCHHHHHHHHH-HHhcCCC----CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 99999999999999996 5443222 22223445555566677777777775420
Q ss_pred -----------Cccc---hhhHHHHHHHHH--------HcCCHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHh
Q 038852 277 -----------LVYD---GVVNATFMEWWF--------NQGKDKEAMQSYKSLMERNFRMT------PATCNTLLEVLLK 328 (851)
Q Consensus 277 -----------~~~d---~~~~~~li~~~~--------~~g~~~~A~~l~~~~~~~~~~~~------~~~~~~Li~~~~~ 328 (851)
...+ ......+...+. ..|++++|+.+|+++++.+.... ..++..++..+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 1111 123333333322 23589999999999998765432 2357778889999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhc
Q 038852 329 HEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCEN 408 (851)
Q Consensus 329 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~ 408 (851)
.|++++|+++|+++++. .| +..++..++.+|...|++++|+++|+++....+. +..+|..++.+|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HP-----TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-----YPPTYYHRGQMYFIL 323 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CC-----CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHhc--CC-----CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-----CHHHHHHHHHHHHhc
Confidence 99999999999999985 34 4678999999999999999999999999876555 788899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHH
Q 038852 409 EMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPIL 488 (851)
Q Consensus 409 g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll 488 (851)
|++++|++.|+++++... .+..+|..++.+|...|++++|+++|+++++..... ...+..++.+|...|++++|+++|
T Consensus 324 ~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL-PEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999987643 256789999999999999999999999999987544 444556899999999999999999
Q ss_pred HHHhhCC-----CCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038852 489 TKMGEKD-----PKPDFLIYDVVVRGLCNE----------GLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEE 553 (851)
Q Consensus 489 ~~m~~~~-----~~pd~~~~~~ll~a~~~~----------g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~e 553 (851)
+++++.. .......+..+..++... |++++|+.+|+++++.. +.+...+..++.+|.+.|++++
T Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHH
Confidence 9987642 222344466667778888 99999999999999865 3567888889999999999999
Q ss_pred HHHHHHhhhhcCCC
Q 038852 554 IERVLNADRWGYAA 567 (851)
Q Consensus 554 A~~ll~~~~~~~~~ 567 (851)
|+++|+++....+.
T Consensus 481 A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 481 AIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCCC
Confidence 99999998876654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.93 E-value=9.9e-25 Score=248.79 Aligned_cols=205 Identities=15% Similarity=0.184 Sum_probs=172.1
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC---------hH
Q 038852 123 ASYLARQAVFSRIRPT-VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK---------VD 192 (851)
Q Consensus 123 A~~l~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~---------~~ 192 (851)
+..+.+++.+.+.... ...++.+|++|++.|++++|+++|++|.+ .|+.||.++||+||.+|++.+. ++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3445555555554443 34688899999999999999999999955 5899999999999999987654 68
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 193 EGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDEL 272 (851)
Q Consensus 193 ~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~ 272 (851)
+|.++|++|.+.+ +.||..+|+.||.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 88 ~A~~lf~~M~~~G-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 88 RGFDIFKQMIVDK-VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 8999999997754 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q 038852 273 KQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKH 329 (851)
Q Consensus 273 ~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~ 329 (851)
.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.+..|+..||+.|+..|+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999998888753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=246.65 Aligned_cols=210 Identities=12% Similarity=0.129 Sum_probs=180.6
Q ss_pred CChhH-HHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----
Q 038852 153 KRYDD-AVALFKYFFDQADIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGR---- 226 (851)
Q Consensus 153 g~~~~-A~~l~~~~~~~~~~~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~---- 226 (851)
|+... +..+++++ ++.+.... ...++.+|++|++.|++++|+++|++|.+.+ +.||..+|+.||.+|.+.+.
T Consensus 3 G~~~s~~e~L~~~~-~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~~ 80 (501)
T 4g26_A 3 GHMASPSENLSRKA-KKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATES 80 (501)
T ss_dssp ----------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSSS
T ss_pred ccccchHHHHHHHH-HHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhhh
Confidence 34433 34444444 33344333 4468899999999999999999999998875 99999999999999987654
Q ss_pred -----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHH
Q 038852 227 -----IGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAM 301 (851)
Q Consensus 227 -----~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~ 301 (851)
+++|.++|++|.+.|+.||..+|++||.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 81 ~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~ 160 (501)
T 4g26_A 81 SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY 160 (501)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHc
Q 038852 302 QSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH 369 (851)
Q Consensus 302 ~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~ 369 (851)
++|++|.+.|+.||..+|+.||.+|++.|+.++|.++|++|.+.+..| +..||+.++..|+..
T Consensus 161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p-----s~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 161 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV-----SKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB-----CHHHHHHHHHHHHSH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc-----CHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999 889999999988753
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-21 Score=212.88 Aligned_cols=314 Identities=11% Similarity=0.093 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
+..+..++..+...|++++|+.+|+++++... .+..+|..++.+|...|++++|+..|+++++.++. +..+|..++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~ 78 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD--FTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cchHHHHHH
Confidence 44556666666666666666666666655432 24556666666666666666666666666665544 555666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcC
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQL---GADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQG 295 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g~---~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g 295 (851)
.+|...|++++|+++|+++++... . +...+..+...+. ...+..++..+...|
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQE-EKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHH-HHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccC-hHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 666666666666666666665432 1 2233322221110 011222345566666
Q ss_pred CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHH
Q 038852 296 KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEA 375 (851)
Q Consensus 296 ~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A 375 (851)
++++|+++|+++++... .+..++..++.++...|++++|+++|+++++.. |+ +..++..++.+|...|++++|
T Consensus 135 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~----~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 135 DYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK--SD----NTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SC----CHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666543 344566666666677777777777777666532 22 566666667777777777777
Q ss_pred HHHHHHhccCCCCCCCccCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHH
Q 038852 376 IETFKKAGTHPKSKPFAMDVAGYN------------NIIARYCENEMLEEAEKLLREISTKSLSPDV----TTFRTLIDA 439 (851)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~d~~~~~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~Ll~~ 439 (851)
+.+|+++....+. +...+. .++..+.+.|++++|+++|+++.+.... +. ..+..++.+
T Consensus 208 ~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 208 LSEVRECLKLDQD-----HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHC 281 (359)
T ss_dssp HHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcc-----chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHH
Confidence 7776666554333 222222 1234445555555555555555443211 11 123334445
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 038852 440 YLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEK 494 (851)
Q Consensus 440 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~ 494 (851)
|...|++++|+++|+++++.+.. +...+..++.+|...|++++|++.|+++++.
T Consensus 282 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555555555555555544322 2222333444555555555555555555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-20 Score=213.79 Aligned_cols=364 Identities=13% Similarity=0.067 Sum_probs=306.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCChHHHH
Q 038852 124 SYLARQAVFSRIRPTVFTCNAIIAAMYR----AKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCD----EGKVDEGM 195 (851)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~----~g~~~~A~ 195 (851)
+..+++....+ +...+..|...|.. .+++++|+.+|+++.+. -+...+..|...|.. .+++++|+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 34444444433 67788888888888 89999999999998764 367888899999998 89999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 038852 196 NVFRRIIETAPVGPSSNTYRHLTKGFVD----AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN----LGNLEKANE 267 (851)
Q Consensus 196 ~l~~~~~~~~~~~p~~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~----~g~~~~A~~ 267 (851)
++|+++.+.+ +...+..|..+|.. .+++++|+++|+++.+.| +...+..|+.+|.. .+++++|++
T Consensus 100 ~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 100 IWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999998764 77788889999988 789999999999998875 67888889999987 789999999
Q ss_pred HHHHHHhcCCccchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----CCCHHHHHHHH
Q 038852 268 LFDELKQRCLVYDGVVNATFMEWWFN----QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLK----HEKKEEAQALF 339 (851)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~----~g~~~~A~~l~ 339 (851)
+|+++.+.+ +...+..+..+|.. .+++++|+++|++..+.+ +...+..|..+|.. .+++++|+++|
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999998864 67788888888888 899999999999998875 45778888888886 78999999999
Q ss_pred HHHHHcCCCCCCCccCHHHHHHHHHHHHH----cCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhc-----CC
Q 038852 340 EQMLDNHQPPNIQAVNSDTFNIMVNECFK----HGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCEN-----EM 410 (851)
Q Consensus 340 ~~m~~~~~~p~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~-----g~ 410 (851)
+++.+.+ +...+..|+.+|.. .+++++|+++|+++.+.. +...+..|..+|... ++
T Consensus 247 ~~a~~~~--------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 247 SQSAEQG--------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-------NSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp HHHHTTT--------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-------CHHHHHHHHHHHHHCBTTBCCC
T ss_pred HHHHHCC--------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHcCCCCCcCC
Confidence 9998753 56788899999988 899999999999987542 677888888888887 89
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH----cCCHHH
Q 038852 411 LEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVE---RIDDALELFNRMVESGLRVVVSFGTKVFNELIT----KGKVAE 483 (851)
Q Consensus 411 ~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~----~g~~~~ 483 (851)
+++|+.+|++..+.+ +...+..|+.+|...| ++++|+++|+++.+.+ +...+..|..+|.. .+++++
T Consensus 312 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 385 (490)
T 2xm6_A 312 REQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQ 385 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 999999999998864 6678888998888866 7899999999999875 34444558888888 899999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 038852 484 CAPILTKMGEKDPKPDFLIYDVVVRGLCN----EGLFDMSKDIVDQMMKYGV 531 (851)
Q Consensus 484 A~~ll~~m~~~~~~pd~~~~~~ll~a~~~----~g~~~~A~~~~~~m~~~g~ 531 (851)
|+++|++..+.+ +...+..|...|.+ .+++++|++.|+++.+.+.
T Consensus 386 A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 386 AAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999999998875 67788888888888 8999999999999998763
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-21 Score=211.62 Aligned_cols=319 Identities=14% Similarity=0.153 Sum_probs=220.4
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
.+..+...+...|++++|+.+|++++... +.+..++..++.++...|++++|+..|+++++... .+..+|..++.+|
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM--DFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CcchHHHHHHHHH
Confidence 46778899999999999999999999875 44788999999999999999999999999987643 3678899999999
Q ss_pred HHcCChHHHHHHHHHHHHhCC---CCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAP---VGPSSNTYRHL------------TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYN 250 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~---~~p~~~~~~~L------------i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~ 250 (851)
...|++++|+..|+++++..+ . +...+..+ +..+...|++++|+++|+++++.... +..++.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 158 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQE--EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRE 158 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccC--hHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHH
Confidence 999999999999999998654 3 45555555 35555566666666666666655433 555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 038852 251 NLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHE 330 (851)
Q Consensus 251 ~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g 330 (851)
.++.+|...|++++|+++|+++++.... +..++..++.+|...|++++|++.|+++++.... +...+..+
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~-------- 228 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHY-------- 228 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHH--------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHH--------
Confidence 6666666666666666666665554433 4445555555555555555555555555444321 11111111
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCC
Q 038852 331 KKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEM 410 (851)
Q Consensus 331 ~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~ 410 (851)
..+. .......++..+.+.|++++|+++|+++....+... ......+..++.++...|+
T Consensus 229 ---------~~~~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 229 ---------KQVK-----------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVA-EYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp ---------HHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH-HHHHHHHHHHHHHHHHTTC
T ss_pred ---------HHHH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHHHHccC
Confidence 1100 011233456778888888888888888876544311 0011335567788888899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q 038852 411 LEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLR 462 (851)
Q Consensus 411 ~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~ 462 (851)
+++|+++|+++++.. ..+..+|..++.+|...|++++|+++|+++++.+..
T Consensus 288 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 288 PVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999998888752 236778888888999999999999999998887643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-19 Score=208.33 Aligned_cols=365 Identities=10% Similarity=0.041 Sum_probs=315.9
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHH
Q 038852 157 DAVALFKYFFDQADIVPNIVSYNNLINTYCD----EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD----AGRIG 228 (851)
Q Consensus 157 ~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~----~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~----~g~~~ 228 (851)
.+++.++...+. -+...+..|...|.. .+++++|+..|+++.+.+ +..++..|...|.. .++++
T Consensus 25 ~~~~~~~~~a~~----g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~ 96 (490)
T 2xm6_A 25 VNLEQLKQKAES----GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYA 96 (490)
T ss_dssp CCHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHH
Confidence 345666665442 378889999999998 899999999999998864 77899999999999 99999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH----cCCHHHH
Q 038852 229 EAVDLLRDMLSRQLGADSLVYNNLISGFLN----LGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN----QGKDKEA 300 (851)
Q Consensus 229 ~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~----~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~----~g~~~~A 300 (851)
+|+++|+++.+.| +...+..|+.+|.. .+++++|+++|+++.+.+ +...+..|..+|.. .+++++|
T Consensus 97 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 97 QAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999999875 77888889999998 889999999999998875 56778888888888 8899999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH----cCCh
Q 038852 301 MQSYKSLMERNFRMTPATCNTLLEVLLK----HEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK----HGKF 372 (851)
Q Consensus 301 ~~l~~~~~~~~~~~~~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~----~g~~ 372 (851)
+++|+++.+.+ +...+..|..+|.. .+++++|+++|+++.+.+ +..++..++.+|.. .+++
T Consensus 171 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 171 REWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--------DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcCCCCCCCH
Confidence 99999999875 56888889999998 899999999999998854 56789999999987 8999
Q ss_pred HHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----
Q 038852 373 SEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCE----NEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKV----- 443 (851)
Q Consensus 373 ~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~----- 443 (851)
++|+++|+++.+.. +...+..|..+|.. .+++++|+++|++..+.+ +...+..|+.+|...
T Consensus 240 ~~A~~~~~~a~~~~-------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~ 309 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG-------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVA 309 (490)
T ss_dssp HHHHHHHHHHHTTT-------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBC
T ss_pred HHHHHHHHHHHHCC-------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCc
Confidence 99999999987642 67788889999988 899999999999998763 677888899999887
Q ss_pred CCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcC---CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCh
Q 038852 444 ERIDDALELFNRMVESGLRVVVSFGTKVFNELITKG---KVAECAPILTKMGEKDPKPDFLIYDVVVRGLCN----EGLF 516 (851)
Q Consensus 444 g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g---~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~----~g~~ 516 (851)
+++++|+.+|+++.+.+. ...+..+..+|...| ++++|+++|++..+.+ +...+..|...|.. .+++
T Consensus 310 ~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 383 (490)
T 2xm6_A 310 KNREQAISWYTKSAEQGD---ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDE 383 (490)
T ss_dssp CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 899999999999999763 334445778887766 8999999999999874 77888889999988 8999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhhhcC
Q 038852 517 DMSKDIVDQMMKYGVGITPALQDFVRETFGK----AGRGEEIERVLNADRWGY 565 (851)
Q Consensus 517 ~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~----~G~~~eA~~ll~~~~~~~ 565 (851)
++|+++|+++.+.+ +...+..|..+|.+ .+++++|.++|++.....
T Consensus 384 ~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 384 QQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999876 57788889999998 899999999999987654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-19 Score=210.74 Aligned_cols=410 Identities=10% Similarity=0.038 Sum_probs=273.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
|...|..++. +.+.|++++|+.+|+++++.. ..+...|..++..+.+.|++++|+.+|+++++.. |+...|..+
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~ 85 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCY 85 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHH
Confidence 5566666665 355666666666666665532 2345566666666666666666666666666543 355555555
Q ss_pred HHHH-HHcCCHHHHHH----HHHHHHhc-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCccch
Q 038852 218 TKGF-VDAGRIGEAVD----LLRDMLSR-QLGA-DSLVYNNLISGFLN---------LGNLEKANELFDELKQRCLVYDG 281 (851)
Q Consensus 218 i~~~-~~~g~~~~A~~----l~~~m~~~-g~~p-d~~~~~~Li~~~~~---------~g~~~~A~~~~~~~~~~~~~~d~ 281 (851)
+... ...|++++|.+ +|+++++. |..+ +...|..++....+ .|++++|+.+|+++++.......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 5422 23455544443 55554432 2221 34555555555443 45666666666666652111111
Q ss_pred hhHHHHHHHH-------------HHcCCHHHHHHHHHHHH------Hhc---CCCC--------HHHHHHHHHHHHhC--
Q 038852 282 VVNATFMEWW-------------FNQGKDKEAMQSYKSLM------ERN---FRMT--------PATCNTLLEVLLKH-- 329 (851)
Q Consensus 282 ~~~~~li~~~-------------~~~g~~~~A~~l~~~~~------~~~---~~~~--------~~~~~~Li~~~~~~-- 329 (851)
.+|....... .+.+++++|..+++++. +.. +.++ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 2222222111 12345677777776532 211 1222 24566555443332
Q ss_pred --CCH----HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH-------cCChH-------HHHHHHHHhcc-CCCC
Q 038852 330 --EKK----EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK-------HGKFS-------EAIETFKKAGT-HPKS 388 (851)
Q Consensus 330 --g~~----~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~-------~g~~~-------~A~~~~~~~~~-~~~~ 388 (851)
++. ++++.+|++++... |+ +..+|..++..+.+ .|+++ +|+.+|+++.. ..+.
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~--p~----~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL--GH----HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH--TT----CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred cCCcchhHHHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 232 47888999999853 33 78899999999886 79987 99999999986 4443
Q ss_pred CCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchh
Q 038852 389 KPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSP-DV-TTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVS 466 (851)
Q Consensus 389 ~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~-~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 466 (851)
+...|..++..+.+.|++++|..+|+++++. .| +. .+|..++..+.+.|++++|+++|+++++........
T Consensus 320 -----~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~ 392 (530)
T 2ooe_A 320 -----NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV 392 (530)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHH
T ss_pred -----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHH
Confidence 7889999999999999999999999999985 34 33 589999999999999999999999999865432222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-C--CCHHHHHHHHH
Q 038852 467 FGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGV-G--ITPALQDFVRE 543 (851)
Q Consensus 467 ~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~-~--~~~~~~~~L~~ 543 (851)
+.......+...|++++|..+|+++++.... +...|..++..+.+.|+.++|+.+|++++..+. . ....++...+.
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 2222222344689999999999999886432 678899999999999999999999999998642 2 23457878888
Q ss_pred HHHhcCCHHHHHHHHHhhhhcCCC
Q 038852 544 TFGKAGRGEEIERVLNADRWGYAA 567 (851)
Q Consensus 544 ~~~~~G~~~eA~~ll~~~~~~~~~ 567 (851)
...+.|+.+.+..+++++...+|+
T Consensus 472 ~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 472 FESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCch
Confidence 899999999999999999887773
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-20 Score=202.35 Aligned_cols=284 Identities=15% Similarity=0.035 Sum_probs=183.0
Q ss_pred CccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 038852 104 RLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLIN 183 (851)
Q Consensus 104 ~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~ 183 (851)
...+..++..+...|++++|+.+|++++.... .+...+..++.++...|++++|+.+|+++++... .+..+|..++.
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~ 98 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYP--SNPVSWFAVGC 98 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHH
Confidence 34556667777777777777777777766542 2344555566666777777777777777766432 24556667777
Q ss_pred HHHHcC-ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 038852 184 TYCDEG-KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNL 262 (851)
Q Consensus 184 ~~~~~g-~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~ 262 (851)
+|...| ++++|+++|+++++.++. +..+|..++.++...|++++|+++|+++++.... +...+..++.+|...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT--YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT--CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 777777 777777777777766544 4556777777777777777777777777766444 455566677777777777
Q ss_pred HHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHhCCCHHH
Q 038852 263 EKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF--------RMTPATCNTLLEVLLKHEKKEE 334 (851)
Q Consensus 263 ~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~--------~~~~~~~~~Li~~~~~~g~~~~ 334 (851)
++|+++|+++++.... +..++..++.+|...|++++|+++|+++++... .....+|..++.+|...|++++
T Consensus 176 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 7777777777665544 556666666667777777777777766665421 1223456666666666666666
Q ss_pred HHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHH
Q 038852 335 AQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARY 405 (851)
Q Consensus 335 A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~ 405 (851)
|+++|+++++... + +..++..++.+|.+.|++++|+++|+++....+. +...+..+..++
T Consensus 255 A~~~~~~a~~~~~--~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLIP--Q----NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-----DTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHST--T----CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCc--c----chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-----chHHHHHHHHHH
Confidence 6666666665432 2 4556666666666666666666666666554443 555555555555
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.6e-21 Score=204.87 Aligned_cols=291 Identities=11% Similarity=0.041 Sum_probs=191.8
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 137 PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRH 216 (851)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~ 216 (851)
.+...+..++..+...|++++|+++|+++++.... +..++..++.++...|++++|+.+|+++++.++. +..+|..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~ 95 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF--HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS--NPVSWFA 95 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--STHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--CHHHHHH
Confidence 34455666777777778888888888887765442 3344556667777788888888888888777655 5667777
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcC
Q 038852 217 LTKGFVDAG-RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQG 295 (851)
Q Consensus 217 Li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g 295 (851)
++.++...| ++++|+++|+++++.... +..+|..++.+|...|++++|+++|+++++.... +...+..++.+|...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence 888888888 788888888888776544 5667777888888888888888888877776544 4455566777777777
Q ss_pred CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---CCccCHHHHHHHHHHHHHcCCh
Q 038852 296 KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPN---IQAVNSDTFNIMVNECFKHGKF 372 (851)
Q Consensus 296 ~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~~~~~~L~~~~~~~g~~ 372 (851)
++++|+++|+++++... .+..++..++.++...|++++|+.+|+++++...... ....+..++..++.+|...|++
T Consensus 174 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 77777777777776653 3456666677777777777777777777665321000 0001345666666666666666
Q ss_pred HHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038852 373 SEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAY 440 (851)
Q Consensus 373 ~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~ 440 (851)
++|+++|+++....+. +..+|..++.+|...|++++|++.|+++++.. ..+...+..++.++
T Consensus 253 ~~A~~~~~~a~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 253 AEALDYHRQALVLIPQ-----NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHHSTT-----CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc-----chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 6666666666554333 45556666666666666666666666665432 12455555555555
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-21 Score=211.19 Aligned_cols=293 Identities=14% Similarity=0.089 Sum_probs=189.6
Q ss_pred HHHcCChhHHHH-HHHHHHHcCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 038852 149 MYRAKRYDDAVA-LFKYFFDQADIVP--NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG 225 (851)
Q Consensus 149 ~~~~g~~~~A~~-l~~~~~~~~~~~p--d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g 225 (851)
+...|++++|++ .|++.+......+ +...+..++..|...|++++|+.+|+++++.++. +..+|..++.+|...|
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK--HMEAWQYLGTTQAENE 112 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCc
Confidence 344578889988 8887655433222 3456778888999999999999999999988765 7788999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHH--------------HHHHH
Q 038852 226 RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNAT--------------FMEWW 291 (851)
Q Consensus 226 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~--------------li~~~ 291 (851)
++++|+++|+++++.... +..++..++.+|...|++++|+++|+++++............ .+..+
T Consensus 113 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999999988655 788899999999999999999999999888655422211111 12222
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcC
Q 038852 292 FNQGKDKEAMQSYKSLMERNFRM-TPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHG 370 (851)
Q Consensus 292 ~~~g~~~~A~~l~~~~~~~~~~~-~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g 370 (851)
...|++++|+++|+++++.+... +..++..++.+|...|++++|+.+|+++++.. |+ +..++..++.+|...|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~----~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PN----DYLLWNKLGATLANGN 265 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHTT
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC----CHHHHHHHHHHHHHcC
Confidence 36666666666666666655432 45566666666666666666666666666542 22 4556666666666666
Q ss_pred ChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----------CHHHHHHHHHHH
Q 038852 371 KFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSP----------DVTTFRTLIDAY 440 (851)
Q Consensus 371 ~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----------d~~~~~~Ll~~~ 440 (851)
++++|+.+|+++....+. +..+|..++.+|.+.|++++|+..|+++++..... ...+|..++.+|
T Consensus 266 ~~~~A~~~~~~al~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPG-----YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL 340 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHH
Confidence 666666666666554333 45566666666666666666666666655431110 145566666666
Q ss_pred HHcCCHHHHHHHHHH
Q 038852 441 LKVERIDDALELFNR 455 (851)
Q Consensus 441 ~~~g~~~~A~~~~~~ 455 (851)
...|++++|..++++
T Consensus 341 ~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 341 SMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHTCGGGHHHHHTT
T ss_pred HHhCChHhHHHhHHH
Confidence 666666666665553
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-19 Score=206.06 Aligned_cols=390 Identities=9% Similarity=0.010 Sum_probs=262.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-------CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQ-------ADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAP---- 206 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-------~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~---- 206 (851)
....||.|+.++...|++++|++.|+++++. .......++|+.++.+|...|++++|+..|+++++...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567899999999999999999999988652 11223467899999999999999999999998876421
Q ss_pred -CC-CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCcc
Q 038852 207 -VG-PSSNTYRHLTKGFVDA--GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFL---NLGNLEKANELFDELKQRCLVY 279 (851)
Q Consensus 207 -~~-p~~~~~~~Li~~~~~~--g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~---~~g~~~~A~~~~~~~~~~~~~~ 279 (851)
.. -...++..++.++... +++++|+++|+++++.... +...+..++.++. ..++.++|++.|+++++.+..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 11 1356777777777665 4689999999999988765 6777777666644 457778899999998887665
Q ss_pred chhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccC
Q 038852 280 DGVVNATFMEWWFN----QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVN 355 (851)
Q Consensus 280 d~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~ 355 (851)
+..++..+...+.. .|++++|+++|++++..+. .+..++..++.+|...|++++|++.|+++++.. |+ +
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~----~ 280 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PN----N 280 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT----C
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CC----h
Confidence 55666666555544 4677889999999888765 456778889999999999999999999998853 43 6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 356 SDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRT 435 (851)
Q Consensus 356 ~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~ 435 (851)
..++..++.+|...+....+... ..+.......+.+++|...|+++.+... .+..++..
T Consensus 281 ~~~~~~lg~~y~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~ 339 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQVMNLRE--------------------NGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSI 339 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--------------------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHH--------------------HHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhh
Confidence 78888888877543222111110 0111111223346788888888876532 24567888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCccchh--HHHHHHH-HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038852 436 LIDAYLKVERIDDALELFNRMVESGLRVVVS--FGTKVFN-ELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCN 512 (851)
Q Consensus 436 Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~L~~-~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~ 512 (851)
++.+|...|++++|+++|+++++....+... ++..+.. .+...|++++|+..|++.++... +......
T Consensus 340 lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~--~~~~~~~------- 410 (472)
T 4g1t_A 340 LASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ--KSREKEK------- 410 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC--CCHHHHH-------
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHHH-------
Confidence 9999999999999999999999876554322 2222332 34568999999999999988643 3222222
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCC
Q 038852 513 EGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPV 569 (851)
Q Consensus 513 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p 569 (851)
..+.+.+++++.++.+ +.+...+..++.+|...|++++|++.|++..+..+..|
T Consensus 411 --~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 411 --MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp --HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred --HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 2234556666666654 34567888899999999999999999999887655444
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-21 Score=209.18 Aligned_cols=260 Identities=12% Similarity=0.028 Sum_probs=161.8
Q ss_pred HHHcCChHHHHH-HHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038852 185 YCDEGKVDEGMN-VFRRIIETAPVGP--SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGN 261 (851)
Q Consensus 185 ~~~~g~~~~A~~-l~~~~~~~~~~~p--~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~ 261 (851)
+...|++++|++ .|+++++..+..+ +...+..++..+...|++++|+.+|+++++.... +..+|..++.+|.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcC
Confidence 445588999998 8887776554433 3456888999999999999999999999988655 78889999999999999
Q ss_pred HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHH----------------HHHHH
Q 038852 262 LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCN----------------TLLEV 325 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~----------------~Li~~ 325 (851)
+++|+++|+++++.+.. +..++..++.+|...|++++|+++|+++++....... .+. .+...
T Consensus 114 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH-LVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG-GCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH-HHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999999887655 6778888889999999999999999998876543221 111 12222
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHH
Q 038852 326 LLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARY 405 (851)
Q Consensus 326 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~ 405 (851)
+ ..|++++|+.+|+++++...... +..++..++.+|...|++++|+.+|+++....+. +..+|..++.+|
T Consensus 192 ~-~~~~~~~A~~~~~~a~~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~l~~~~ 261 (368)
T 1fch_A 192 L-SDSLFLEVKELFLAAVRLDPTSI----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-----DYLLWNKLGATL 261 (368)
T ss_dssp H-HHHHHHHHHHHHHHHHHHSTTSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHH
T ss_pred h-hcccHHHHHHHHHHHHHhCcCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----CHHHHHHHHHHH
Confidence 2 55555555555555555322110 2445555555555555555555555555443332 444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 406 CENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 406 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
...|++++|+.+|+++++.. ..+..++..++.+|.+.|++++|+.+|+++++
T Consensus 262 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 262 ANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555555555555555431 12344555555555555555555555555554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-19 Score=204.63 Aligned_cols=382 Identities=12% Similarity=-0.002 Sum_probs=266.8
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-----CCC
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFS--------RIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQA-----DIV 172 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-----~~~ 172 (851)
.+..+...+...|++++|++.|++++.. .......+|+.+..+|...|++++|+..|+++++.. ...
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 3556788899999999999999998753 122346789999999999999999999999986531 111
Q ss_pred -CCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCCCCH
Q 038852 173 -PNIVSYNNLINTYCDE--GKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFV---DAGRIGEAVDLLRDMLSRQLGADS 246 (851)
Q Consensus 173 -pd~~~~~~Li~~~~~~--g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~---~~g~~~~A~~l~~~m~~~g~~pd~ 246 (851)
....++..++.++... +++++|++.|+++++.+|. +...+..++.++. ..++.++|++.|+++++.... +.
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~--~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~ 209 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK--NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQ 209 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-ch
Confidence 2356777777777665 4699999999999999877 6667777766644 467788999999999998665 77
Q ss_pred HHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 038852 247 LVYNNLISGFLNL----GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTL 322 (851)
Q Consensus 247 ~~~~~Li~~~~~~----g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~L 322 (851)
.++..++..+... |++++|+++|+++...... +..++..++.+|...|++++|++.|+++++..+. +..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHH
Confidence 7787777666554 5788999999999987765 7788899999999999999999999999988753 55677777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHH
Q 038852 323 LEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNII 402 (851)
Q Consensus 323 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li 402 (851)
+.+|...+... ... ....+.......+.+++|+..|+++....+. +..++..++
T Consensus 288 g~~y~~~~~~~---------~~~------------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~lg 341 (472)
T 4g1t_A 288 GCCYRAKVFQV---------MNL------------RENGMYGKRKLLELIGHAVAHLKKADEANDN-----LFRVCSILA 341 (472)
T ss_dssp HHHHHHHHHHH---------HHC------------------CHHHHHHHHHHHHHHHHHHHHHCTT-----TCCCHHHHH
T ss_pred HHHHHHHHHHh---------hhH------------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-----hhhhhhhHH
Confidence 77764321111 110 0111111222334467889999988766554 556788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcC
Q 038852 403 ARYCENEMLEEAEKLLREISTKSLSPDV--TTFRTLIDA-YLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKG 479 (851)
Q Consensus 403 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~~~~~Ll~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g 479 (851)
.+|...|++++|++.|+++++....+.. ..+..++.. +...|++++|+..|+++++........ .+
T Consensus 342 ~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~-----------~~ 410 (472)
T 4g1t_A 342 SLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK-----------EK 410 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH-----------HH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH-----------HH
Confidence 9999999999999999999876433221 123344433 356799999999999999876432111 11
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038852 480 KVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG 530 (851)
Q Consensus 480 ~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g 530 (851)
..+.+.+++++.++.+.. +..+|..+..+|...|++++|++.|+++++.+
T Consensus 411 ~~~~l~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 411 MKDKLQKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 223445566666665433 66789999999999999999999999999765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.7e-18 Score=196.27 Aligned_cols=406 Identities=11% Similarity=0.057 Sum_probs=301.9
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
.+..++. +.+.|++++|+.+|++++... +.+...|..++..+.+.|++++|+++|++++... |++..|..++...
T Consensus 15 ~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 15 AWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSYV 89 (530)
T ss_dssp HHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHH
Confidence 3445565 578899999999999998653 5578899999999999999999999999997643 6888888887533
Q ss_pred -HHcCChHHHHH----HHHHHHHhCCCC-CCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 038852 186 -CDEGKVDEGMN----VFRRIIETAPVG-PSSNTYRHLTKGFVD---------AGRIGEAVDLLRDMLSRQLGADSLVYN 250 (851)
Q Consensus 186 -~~~g~~~~A~~----l~~~~~~~~~~~-p~~~~~~~Li~~~~~---------~g~~~~A~~l~~~m~~~g~~pd~~~~~ 250 (851)
...|++++|.+ +|+++++..+.. .+...|..++....+ .|++++|..+|+++++.........|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 45677777665 888887764443 356788888887665 789999999999999842221124444
Q ss_pred HHHHHH-------------HhcCCHHHHHHHHHHHH------hcC---Cccc--------hhhHHHHHHHHHHc----CC
Q 038852 251 NLISGF-------------LNLGNLEKANELFDELK------QRC---LVYD--------GVVNATFMEWWFNQ----GK 296 (851)
Q Consensus 251 ~Li~~~-------------~~~g~~~~A~~~~~~~~------~~~---~~~d--------~~~~~~li~~~~~~----g~ 296 (851)
...... .+.+++++|+.+++++. +.. +.++ ...|...+...... ++
T Consensus 170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~ 249 (530)
T 2ooe_A 170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 249 (530)
T ss_dssp HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence 333321 13456778887777632 221 1222 24555555433332 23
Q ss_pred H----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-------CCCHH-------HHHHHHHHHHHcCCCCCCCccCHHH
Q 038852 297 D----KEAMQSYKSLMERNFRMTPATCNTLLEVLLK-------HEKKE-------EAQALFEQMLDNHQPPNIQAVNSDT 358 (851)
Q Consensus 297 ~----~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~-------~g~~~-------~A~~l~~~m~~~~~~p~~~~~~~~~ 358 (851)
. ++++.+|++++...+ .+...|..++..+.. .|+++ +|+++|+++++. +.|+ +..+
T Consensus 250 ~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~----~~~l 323 (530)
T 2ooe_A 250 QTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKK----NMLL 323 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSS----CHHH
T ss_pred chhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcc----cHHH
Confidence 2 478889999998754 467889888888876 78877 999999999862 2343 7889
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 359 FNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDV-AGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLI 437 (851)
Q Consensus 359 ~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll 437 (851)
|..++..+.+.|++++|+.+|+++....+. +. ..|..++..+.+.|++++|+++|++.++... .+...|...+
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a 397 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDI-----DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAA 397 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCcccc-----CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHH
Confidence 999999999999999999999999876543 43 5899999999999999999999999997532 2333343333
Q ss_pred HH-HHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC-CC--CHHHHHHHHHHHHhc
Q 038852 438 DA-YLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDP-KP--DFLIYDVVVRGLCNE 513 (851)
Q Consensus 438 ~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~-~p--d~~~~~~ll~a~~~~ 513 (851)
.. +...|++++|+++|+++++.... +..++..++..+.+.|+.++|..+|++++.... .| ....|..++......
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred HHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 22 44689999999999999987643 345556688888999999999999999998643 22 355888888888899
Q ss_pred CChHHHHHHHHHHHHc
Q 038852 514 GLFDMSKDIVDQMMKY 529 (851)
Q Consensus 514 g~~~~A~~~~~~m~~~ 529 (851)
|+.+.+..++.++++.
T Consensus 477 G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 477 GDLASILKVEKRRFTA 492 (530)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999999864
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-20 Score=205.43 Aligned_cols=234 Identities=13% Similarity=0.042 Sum_probs=144.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
+...|..++..+.+.|++++|+++|+++++.++. +..+|..++.+|...|++++|+++|+++++.... +..+|..++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG--DAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHH
Confidence 3456888899999999999999999999988766 7889999999999999999999999999988655 788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhH----------HHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-CHHHHHHH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVN----------ATFMEWWFNQGKDKEAMQSYKSLMERNFRM-TPATCNTL 322 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~----------~~li~~~~~~g~~~~A~~l~~~~~~~~~~~-~~~~~~~L 322 (851)
.+|...|++++|+++|+++++.... +...+ ..++.+|.+.|++++|+++|+++++.+... +..+|..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999998876433 11222 223444445555555555555555443321 34444445
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHH
Q 038852 323 LEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNII 402 (851)
Q Consensus 323 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li 402 (851)
+.+|...|++++|+++|+++++.. |+ +..++..++.+|...|++++|+.+|+++....+. +..+|..++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~ 288 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR--PE----DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-----FIRSRYNLG 288 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----chHHHHHHH
Confidence 555555555555555555544432 11 3444444444444445555554444444433222 344444444
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 038852 403 ARYCENEMLEEAEKLLREIS 422 (851)
Q Consensus 403 ~~~~~~g~~~~A~~l~~~m~ 422 (851)
.+|...|++++|+..|++++
T Consensus 289 ~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 289 ISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 44444444444444444443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-17 Score=199.03 Aligned_cols=385 Identities=11% Similarity=0.102 Sum_probs=294.5
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRI--RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLIN 183 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~ 183 (851)
.....+++|+.+|++.+|++++++++...- ..+....+.|+.+..+. +..+..++.++.- ......++.
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd--------~~d~~eIA~ 1057 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD--------NYDAPDIAN 1057 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh--------hccHHHHHH
Confidence 445678899999999999999999984431 24567788888777776 5566666666541 112455888
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 038852 184 TYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLE 263 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~ 263 (851)
.+...|.+++|..+|++.. . .....+.++ ...+++++|.++++++. +..+|..++.++...|+++
T Consensus 1058 Iai~lglyEEAf~IYkKa~----~--~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD----V--NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC----C--HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHH
Confidence 8999999999999999972 1 222333333 37889999999998662 6789999999999999999
Q ss_pred HHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 038852 264 KANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQML 343 (851)
Q Consensus 264 ~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~ 343 (851)
+|++.|.+. -|...|..++.+|.+.|++++|+++|..+++....+. ..+.++.+|++.+++++...+ +
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~--Idt~LafaYAKl~rleele~f----I 1190 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAKTNRLAELEEF----I 1190 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc--ccHHHHHHHHhhcCHHHHHHH----H
Confidence 999999775 2777888899999999999999999999887763332 334599999999998864433 2
Q ss_pred HcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 344 DNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREIST 423 (851)
Q Consensus 344 ~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 423 (851)
. .+ +...|..++..|...|++++|..+|.++ ..|..++.+|++.|++++|++.+++..
T Consensus 1191 ~---~~-----n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------------~ny~rLA~tLvkLge~q~AIEaarKA~- 1248 (1630)
T 1xi4_A 1191 N---GP-----NNAHIQQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLGEYQAAVDGARKAN- 1248 (1630)
T ss_pred h---CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHhh-------------hHHHHHHHHHHHhCCHHHHHHHHHHhC-
Confidence 2 12 4567778999999999999999999986 249999999999999999999999873
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 038852 424 KSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIY 503 (851)
Q Consensus 424 ~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~ 503 (851)
+..+|..+..+|...|+++.|..+...+. .....+..++..|.+.|.+++|+.+++..+... .-....|
T Consensus 1249 -----n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmf 1317 (1630)
T 1xi4_A 1249 -----STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMF 1317 (1630)
T ss_pred -----CHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHH
Confidence 67899999999999999999998776432 234445568899999999999999999988664 3344566
Q ss_pred HHHHHHHHh--cCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 504 DVVVRGLCN--EGLFDMSKDIVDQMMKYG----VGITPALQDFVRETFGKAGRGEEIERVLN 559 (851)
Q Consensus 504 ~~ll~a~~~--~g~~~~A~~~~~~m~~~g----~~~~~~~~~~L~~~~~~~G~~~eA~~ll~ 559 (851)
+.|..+|.+ -++..+++++|..-+... .-.....|..++.+|.+.|+++.|...+-
T Consensus 1318 tELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1318 TELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 666666655 456666666666443210 01245567779999999999999985443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-19 Score=190.68 Aligned_cols=275 Identities=12% Similarity=0.045 Sum_probs=128.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038852 142 CNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGF 221 (851)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~ 221 (851)
+..++..+...|++++|+.+|+++++... .+..+|..++.+|...|++++|++.|+++++.++. +..+|..++.+|
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~ 99 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIAVHAALAVSH 99 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC--CHHHHHHHHHHH
Confidence 34444445555555555555555544322 23444555555555555555555555555554433 444455555555
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHH-HH-HHHHcCCHHH
Q 038852 222 VDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATF-ME-WWFNQGKDKE 299 (851)
Q Consensus 222 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l-i~-~~~~~g~~~~ 299 (851)
...|++++|++.|+++++.... +...+..++..+ ++......+ .. ++...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 5555555555555555544322 111111110000 000000011 11 2444455555
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHH
Q 038852 300 AMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETF 379 (851)
Q Consensus 300 A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~ 379 (851)
|+++|+++++.+.. +..++..++.+|...|++++|+++|+++++.. |+ +..++..++.+|...|++++|+.+|
T Consensus 157 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~~~~~~A~~~~ 229 (327)
T 3cv0_A 157 CRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PD----DAQLWNKLGATLANGNRPQEALDAY 229 (327)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC----cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555554332 34455555555556666666666666555532 21 4455555555555555555555555
Q ss_pred HHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHHcCCHHH
Q 038852 380 KKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSP-----------DVTTFRTLIDAYLKVERIDD 448 (851)
Q Consensus 380 ~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------d~~~~~~Ll~~~~~~g~~~~ 448 (851)
+++....+. +..+|..++.+|...|++++|++.|+++++..... +..+|..++.+|.+.|++++
T Consensus 230 ~~a~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 230 NRALDINPG-----YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCC-----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 555443322 44455555555555555555555555554431110 23445555555555555555
Q ss_pred HHHHHHH
Q 038852 449 ALELFNR 455 (851)
Q Consensus 449 A~~~~~~ 455 (851)
|..++++
T Consensus 305 A~~~~~~ 311 (327)
T 3cv0_A 305 VELTYAQ 311 (327)
T ss_dssp HHHHTTC
T ss_pred HHHHHHH
Confidence 5555543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=203.34 Aligned_cols=380 Identities=12% Similarity=0.115 Sum_probs=185.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 038852 116 RAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGM 195 (851)
Q Consensus 116 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~ 195 (851)
+.|++++|.+.++++- +..+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 5678999999999872 2359999999999999999999999764 47778999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 196 NVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 196 ~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
.+++.+++. .++..+.+.|+.+|.+.|+++++.++++ .|+..+|..++..|...|++++|..+|..+
T Consensus 82 ~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 82 KYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 988887763 2356788999999999999999998885 257779999999999999999999999976
Q ss_pred CCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccC
Q 038852 276 CLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVN 355 (851)
Q Consensus 276 ~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~ 355 (851)
..|..++.++.+.|++++|++.++++ .++.+|..++.+|+..|+++.|..+...+. . +
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~-------~ 206 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---V-------H 206 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---T-------C
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---h-------C
Confidence 47899999999999999999999998 256899999999999999999976655422 1 4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC-----
Q 038852 356 SDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCEN--EMLEEAEKLLREISTKSLSP----- 428 (851)
Q Consensus 356 ~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p----- 428 (851)
+.-...++..|.+.|.+++|+.+|+......+. ....|+.|..+|++- +++.+.+++|..-+ ++.+
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~a-----h~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~ 279 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLERA-----HMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAA 279 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC-----CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHH
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHH
Confidence 555667999999999999999999999876544 677888888888764 45556666554321 1221
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------ccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 038852 429 -DVTTFRTLIDAYLKVERIDDALELFNRMVESGL-----------RVVVSFGTKVFNELITKGKVAECAPILTKMGEKDP 496 (851)
Q Consensus 429 -d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~-----------~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~ 496 (851)
+...|..+...|...++++.|...+-+-..... ..+..+|...+..|. +...+++.-+...+...+
T Consensus 280 ~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~l 357 (449)
T 1b89_A 280 EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRL 357 (449)
T ss_dssp HTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhcc
Confidence 345688999999999999998874332211100 012233333444444 111122222222221111
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038852 497 KPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNA 560 (851)
Q Consensus 497 ~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~ 560 (851)
| .+..+..+.+.|.+..+..++..+.+. ....+-..+-++|...++++.-+.-++.
T Consensus 358 --d---~~r~v~~~~~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 358 --D---HTRAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSIDA 413 (449)
T ss_dssp --C---HHHHHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --C---cHHHHHHHHHcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 2 233455566777777777777666654 3566666788888888888776666654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-19 Score=196.62 Aligned_cols=271 Identities=12% Similarity=0.099 Sum_probs=205.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
+...|..++..+.+.|++++|+++|+++++... .+..+|..++.+|...|++++|+++|+++++.++. +..+|..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP--GDAEAWQFLGITQAENENEQAAIVALQRCLELQPN--NLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHH
Confidence 344577788888888999999999998877643 46778888899999999999999999998888765 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc-chhhHHHH
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLG---------ADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVY-DGVVNATF 287 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~---------pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~-d~~~~~~l 287 (851)
+.+|...|++++|+++|+++++.... ....++..++.+|.+.|++++|+++|+++++..... +..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999988875322 012334456888999999999999999999876542 57788999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHH
Q 038852 288 MEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECF 367 (851)
Q Consensus 288 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~ 367 (851)
+.+|...|++++|+++|+++++... .+..+|+.++.+|...|++++|+.+|+++++.. |+ +..++..++.+|.
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~----~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PG----FIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC----chHHHHHHHHHHH
Confidence 9999999999999999999998864 356889999999999999999999999999853 33 6889999999999
Q ss_pred HcCChHHHHHHHHHhccCCCCCCC-------ccCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 368 KHGKFSEAIETFKKAGTHPKSKPF-------AMDVAGYNNIIARYCENEMLEEAEKLLR 419 (851)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~~~~~~~-------~~d~~~~~~li~~~~~~g~~~~A~~l~~ 419 (851)
+.|++++|+.+|+++....+.... ..+..+|..+..++...|+.+.+.++++
T Consensus 293 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999998654322110 0023455566666666666665555544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-18 Score=185.31 Aligned_cols=268 Identities=12% Similarity=0.022 Sum_probs=174.9
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
..+..++..+...|++++|+.+|++++... ..+..+|..++.++...|++++|++.|+++++... .+..+|..++.+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--CCHHHHHHHHHH
Confidence 568899999999999999999999999875 44788999999999999999999999999988643 467889999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL--------------TK-GFVDAGRIGEAVDLLRDMLSRQLGADSLVY 249 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 249 (851)
|...|++++|++.|+++++..+. +...+..+ .. ++...|++++|+++|+++++.... +..++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ--YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT--TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence 99999999999999999988765 33334333 21 244445555555555555554333 44455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q 038852 250 NNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKH 329 (851)
Q Consensus 250 ~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~ 329 (851)
..++.+|.+.|++++|+++|+++++.... +..+|..++.++...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~~~~ 219 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPD------------------------------------DAQLWNKLGATLANG 219 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------------------------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC------------------------------------cHHHHHHHHHHHHHc
Confidence 55555555555555555555554443322 334555555566666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCc-------cCHHHHHHHH
Q 038852 330 EKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFA-------MDVAGYNNII 402 (851)
Q Consensus 330 g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~d~~~~~~li 402 (851)
|++++|+++|+++++.. |+ +..++..++.+|...|++++|+++|+++....+..... .+..+|..++
T Consensus 220 ~~~~~A~~~~~~a~~~~--~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 293 (327)
T 3cv0_A 220 NRPQEALDAYNRALDIN--PG----YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFR 293 (327)
T ss_dssp TCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC--CC----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHH
Confidence 66666666666655532 21 45556666666666666666666666554332221000 0245566677
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 038852 403 ARYCENEMLEEAEKLLRE 420 (851)
Q Consensus 403 ~~~~~~g~~~~A~~l~~~ 420 (851)
.++.+.|++++|..++++
T Consensus 294 ~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 294 MLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHTTCHHHHHHHTTC
T ss_pred HHHHhcCCHHHHHHHHHH
Confidence 777777777777766654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-16 Score=188.72 Aligned_cols=387 Identities=13% Similarity=0.163 Sum_probs=234.4
Q ss_pred CCCCCCCccccccccCCCHHHHHHHHHHhhccccCCCCCccCCCCCCCCCCCCCCCCCCCCccccccCCCccHH-HHHHH
Q 038852 35 SPNPNLNPISARGYAFSSAEEAAAERRRRKRRLRIEPPLHAIRPNPTQPPPRDPNAPRLPDTTSALVGPRLNLH-NRVQS 113 (851)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~-~ll~~ 113 (851)
+-+|--.+..++.|.+.+.+..++..+.+-. +.++. +. ...++- .+++.
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKiv---l~~s~-------------------fs--------~n~~LqnlLi~t 1031 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIV---LDNSV-------------------FS--------EHRNLQNLLILT 1031 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHH---cCCCc-------------------cc--------ccHHHHHHHHHH
Confidence 3344344556799999999999998875443 11100 00 011111 13444
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHH
Q 038852 114 LIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDE 193 (851)
Q Consensus 114 l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~ 193 (851)
.++. +..+..++..+.- ......++..+...|.+++|..+|++.- -.....+.++ ...+++++
T Consensus 1032 AIka-D~~Rv~eyI~kLd-------~~d~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLi---e~i~nldr 1094 (1630)
T 1xi4_A 1032 AIKA-DRTRVMEYINRLD-------NYDAPDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLI---EHIGNLDR 1094 (1630)
T ss_pred HHHh-ChhhHHHHHHHhh-------hccHHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHH---HHHhhHHH
Confidence 4444 4444444444322 1113446666677777777777777651 1122222222 25677777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038852 194 GMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELK 273 (851)
Q Consensus 194 A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~ 273 (851)
|.++++++. +..+|..++.++...|++++|++.|.++ -|...|..++.+|.+.|++++|.++|...+
T Consensus 1095 AiE~Aervn-------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A 1095 AYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred HHHHHHhcC-------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777651 3457777777777777777777777554 266677777777777777777777777766
Q ss_pred hcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCc
Q 038852 274 QRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQA 353 (851)
Q Consensus 274 ~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 353 (851)
+... +..+...++.+|++.+++++..++. + .++...|..++..|...|++++|..+|..+
T Consensus 1162 k~~~--e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------- 1221 (1630)
T 1xi4_A 1162 KKAR--ESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------- 1221 (1630)
T ss_pred hhcc--cccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----------
Confidence 5542 3333334777777777776433332 1 123345556777777777777777777764
Q ss_pred cCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038852 354 VNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTF 433 (851)
Q Consensus 354 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 433 (851)
..|..++.+|++.|++++|++.++++. +..+|..+..+|...|+++.|......+ ..+...+
T Consensus 1222 ---~ny~rLA~tLvkLge~q~AIEaarKA~----------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deL 1283 (1630)
T 1xi4_A 1222 ---SNFGRLASTLVHLGEYQAAVDGARKAN----------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADEL 1283 (1630)
T ss_pred ---hHHHHHHHHHHHhCCHHHHHHHHHHhC----------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHH
Confidence 267777777777777777777777762 5667777777777777777777665532 2245556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHc--CCHHHHHHHHHHHhhCC----CCCCHHHHHHHH
Q 038852 434 RTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITK--GKVAECAPILTKMGEKD----PKPDFLIYDVVV 507 (851)
Q Consensus 434 ~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~--g~~~~A~~ll~~m~~~~----~~pd~~~~~~ll 507 (851)
..++..|.+.|.+++|+.+|+..+..+ +-...+++.+...|.+. ++..+++++|..-.+.. ..-+...|..++
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv 1362 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 1362 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHH
Confidence 677777777777777777777776655 33444555555555543 44555555555433210 011445677777
Q ss_pred HHHHhcCChHHHH
Q 038852 508 RGLCNEGLFDMSK 520 (851)
Q Consensus 508 ~a~~~~g~~~~A~ 520 (851)
-.|.+.|+++.|.
T Consensus 1363 ~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1363 FLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHhcccHHHHH
Confidence 7777777777776
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-17 Score=175.40 Aligned_cols=260 Identities=12% Similarity=0.093 Sum_probs=196.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG 189 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g 189 (851)
-|+.++..|++..|+..++++..............++.+|...|++++|+..++.. ..++..++..++..|...|
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCC
Confidence 36778888999999988877543221111335566788899999999999876542 2356778888888888899
Q ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 190 KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELF 269 (851)
Q Consensus 190 ~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~ 269 (851)
+.++|++.|++++......-+...+..++.+|...|++++|+++|++ ..+..++..++.+|.+.|++++|++.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999887531122677788888999999999999999987 247788889999999999999999999
Q ss_pred HHHHhcCCccchh--hHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 038852 270 DELKQRCLVYDGV--VNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQ 347 (851)
Q Consensus 270 ~~~~~~~~~~d~~--~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~ 347 (851)
+++++.+.. +.. ....++..+...|++++|+++|+++++..+ .+..+|+.++.++.+.|++++|++.|+++++..
T Consensus 154 ~~~~~~~p~-~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 154 KKMQDQDED-ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHhhCcC-cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999887533 111 112233444455888999999998888754 477788888888889999999999999888753
Q ss_pred CCCCCccCHHHHHHHHHHHHHcCChHH-HHHHHHHhccCCCC
Q 038852 348 PPNIQAVNSDTFNIMVNECFKHGKFSE-AIETFKKAGTHPKS 388 (851)
Q Consensus 348 ~p~~~~~~~~~~~~L~~~~~~~g~~~~-A~~~~~~~~~~~~~ 388 (851)
|+ +..++..++.++...|+.++ +.++++++....+.
T Consensus 231 -p~----~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 231 -SG----HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp -TT----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred -CC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 43 78888888888888888875 56788887766555
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-18 Score=192.27 Aligned_cols=347 Identities=11% Similarity=0.051 Sum_probs=167.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 109 NRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRY---DDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 109 ~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
.+...+.+.|++++|+.+|+++...+ +...+..|..+|...|+. ++|+++|+++.+. +...+..|..++
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHH
Confidence 45666677777777777777776654 233444555556666666 6777777766532 444455566545
Q ss_pred HHcC-----ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038852 186 CDEG-----KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRI---GEAVDLLRDMLSRQLGADSLVYNNLISGFL 257 (851)
Q Consensus 186 ~~~g-----~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~---~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~ 257 (851)
...+ ++++|+++|+++.+.+. ..++..|+.+|...+.. .++++.+.+..+.| +...+..|+..|.
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~----~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGE----GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYR 152 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTC----SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHH
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 4444 56677777777766542 22566666666655433 23444444444443 2345555666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC----C
Q 038852 258 NLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQG---KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKH----E 330 (851)
Q Consensus 258 ~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g---~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~----g 330 (851)
..+.++++....+.+.+.....+...+..|..+|.+.| ++++|++.|++..+.+.. +...+..|..+|... +
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSC
T ss_pred cCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCC
Confidence 66644444333322222212223335556666666666 666666666666665532 223334455555433 4
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHH-H--HHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHh
Q 038852 331 KKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNE-C--FKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCE 407 (851)
Q Consensus 331 ~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~ 407 (851)
++++|+++|+++. .+ +...+..|+.+ | ...+++++|+++|+++.+.. +...+..|..+|.
T Consensus 232 d~~~A~~~~~~aa-~g--------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-------~~~A~~~Lg~~y~- 294 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG--------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-------QPRAELLLGKLYY- 294 (452)
T ss_dssp CHHHHHHHHHHHG-GG--------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHc-CC--------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHH-
Confidence 5666666666654 21 34455555555 2 34556666666666654321 4555555555554
Q ss_pred cC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH-
Q 038852 408 NE-----MLEEAEKLLREISTKSLSPDVTTFRTLIDAYLK----VERIDDALELFNRMVESGLRVVVSFGTKVFNELIT- 477 (851)
Q Consensus 408 ~g-----~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~- 477 (851)
.| ++++|+++|++.. . -+...+..|+.+|.. ..++++|+++|+++.+.|. ......|..+|..
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G 367 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQG 367 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSC
T ss_pred cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhC
Confidence 33 5666666665554 2 244555555555544 2355666666666555442 1111224444432
Q ss_pred ---cCCHHHHHHHHHHHhhCC
Q 038852 478 ---KGKVAECAPILTKMGEKD 495 (851)
Q Consensus 478 ---~g~~~~A~~ll~~m~~~~ 495 (851)
..+.++|..+|++..+.|
T Consensus 368 ~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 368 KGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTBCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHCC
Confidence 235555555555555443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.6e-18 Score=190.34 Aligned_cols=380 Identities=11% Similarity=0.011 Sum_probs=262.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038852 144 AIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKV---DEGMNVFRRIIETAPVGPSSNTYRHLTKG 220 (851)
Q Consensus 144 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~---~~A~~l~~~~~~~~~~~p~~~~~~~Li~~ 220 (851)
.+...+.+.|++++|+++|+++.+.. +...+..|..+|...|+. ++|+++|+++.+. +...+..|+.+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC---------------------------------CHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHH
Confidence 36677788999999999999997752 444567788888888888 9999999999754 45577888886
Q ss_pred HHHcC-----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcC
Q 038852 221 FVDAG-----RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQG 295 (851)
Q Consensus 221 ~~~~g-----~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g 295 (851)
+...+ ++++|+++|+++.+.|.. ..+..|+.+|...+..+++.+.++.+......-+......|..+|...+
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQG 155 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHT
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 66655 789999999999997644 3677888888887765544444443333221224667888888899988
Q ss_pred CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHc---
Q 038852 296 KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHE---KKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH--- 369 (851)
Q Consensus 296 ~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g---~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~--- 369 (851)
.++++++..+.+.+.-...+...+..|..+|...| +.++|++.|+++.+.+.. +...+..|+.+|...
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~------~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV------TAQRVDSVARVLGDATLG 229 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS------CHHHHHHHHHHHTCGGGS
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHhCCCCC
Confidence 66655555444443333333358888999999999 999999999999997654 566668889888665
Q ss_pred -CChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-
Q 038852 370 -GKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIAR-Y--CENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVE- 444 (851)
Q Consensus 370 -g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g- 444 (851)
+++++|+++|+++. .. +...+..|..+ | ...+++++|+++|++..+.| +...+..|+.+|. .|
T Consensus 230 ~~d~~~A~~~~~~aa---~g-----~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~ 297 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA---PG-----YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGK 297 (452)
T ss_dssp SCCHHHHHHHHHHHG---GG-----STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCS
T ss_pred CCCHHHHHHHHHHHc---CC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCC
Confidence 79999999999986 22 67778888887 4 46899999999999999875 7888888998887 55
Q ss_pred ----CHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----
Q 038852 445 ----RIDDALELFNRMVESGLRVVVSFGTKVFNELIT----KGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCN---- 512 (851)
Q Consensus 445 ----~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~---- 512 (851)
++++|+++|+++. .| +......|..+|.. ..++++|+++|++..+.|. ......|...|..
T Consensus 298 g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 298 WVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGT 370 (452)
T ss_dssp SSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTB
T ss_pred CCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCC
Confidence 9999999999998 44 33334447777766 3499999999999998763 3455556666654
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHhhhh
Q 038852 513 EGLFDMSKDIVDQMMKYGVGITPALQDFVRETF--GKAGRGEEIERVLNADRW 563 (851)
Q Consensus 513 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~--~~~G~~~eA~~ll~~~~~ 563 (851)
..+.++|..+|+...+.|. ......+..+. ...++.++|.+++++.+.
T Consensus 371 ~~d~~~A~~~~~~A~~~g~---~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 371 KPDPLNAYVFSQLAKAQDT---PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp CCCHHHHHHHHHHHHTTCC---HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4689999999999998874 23333333332 234567788888887654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-18 Score=185.20 Aligned_cols=271 Identities=13% Similarity=0.090 Sum_probs=140.1
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
..+..++.++++.|++++|++.|.++ .|...|..++.++...|++++|+++++.+++. .++..+.+.|+.+
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~---~~~~~i~~~Li~~ 103 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CccchhHHHHHHH
Confidence 46778999999999999999999763 46778999999999999999999988877553 3457789999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEK 264 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~ 264 (851)
|.+.|+++++.++++ .|+..+|..++..|...|++++|..+|..+ ..|..|+.++.+.|++++
T Consensus 104 Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~ 166 (449)
T 1b89_A 104 LAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQA 166 (449)
T ss_dssp -----CHHHHTTTTT--------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHH
T ss_pred HHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHH
Confidence 999999999998885 246679999999999999999999999977 368999999999999999
Q ss_pred HHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 038852 265 ANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLD 344 (851)
Q Consensus 265 A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 344 (851)
|++.++++ .+..+|..++.+|+..|+++.|..+...+ ...+.-...++..|.+.|++++|+.+|+..+.
T Consensus 167 AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 167 AVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 99999998 27889999999999999999997766542 23334455799999999999999999999986
Q ss_pred cCCCCCCCccCHHHHHHHHHHHHHc--CChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 345 NHQPPNIQAVNSDTFNIMVNECFKH--GKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLL 418 (851)
Q Consensus 345 ~~~~p~~~~~~~~~~~~L~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~ 418 (851)
.. +. ....|+.|+.+|++- +++.+.++.|......++.-...-+...|..++..|...++++.|...+
T Consensus 236 le--~a----h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 236 LE--RA----HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp ST--TC----CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred Cc--HH----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 54 22 678899998888765 4566666666543322220000015667999999999999999988754
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.4e-15 Score=173.22 Aligned_cols=431 Identities=8% Similarity=0.002 Sum_probs=306.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC---hHHHHHHHH
Q 038852 123 ASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK---VDEGMNVFR 199 (851)
Q Consensus 123 A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~---~~~A~~l~~ 199 (851)
.+..|++.+..+ +.|...|..++..+.+.++++.|..+|++++.... .....|...+..-.+.|+ ++.+.++|+
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP--~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP--LMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 445567767666 46899999999999889999999999999988643 466778888888888888 999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHh-cCC-CC-CHHHHHHHHHHHHh---------c
Q 038852 200 RIIETAPVGPSSNTYRHLTKGFVDAGRI--------GEAVDLLRDMLS-RQL-GA-DSLVYNNLISGFLN---------L 259 (851)
Q Consensus 200 ~~~~~~~~~p~~~~~~~Li~~~~~~g~~--------~~A~~l~~~m~~-~g~-~p-d~~~~~~Li~~~~~---------~ 259 (851)
+++...+..+++..|...+....+.++. +...++|+.++. .|. .+ +...|...+..... .
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 9987654347888898888777665543 334577777665 344 33 45678777766542 3
Q ss_pred CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH-------------cCCHHHHHHHHHHHHHh--cCC-----------
Q 038852 260 GNLEKANELFDELKQRCLVYDGVVNATFMEWWFN-------------QGKDKEAMQSYKSLMER--NFR----------- 313 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~-------------~g~~~~A~~l~~~~~~~--~~~----------- 313 (851)
++++.+..+|++++..-...-..+|......-.. ..+++.|...+.++... ++.
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 4577888999998864222122333322221111 12344455555543321 110
Q ss_pred ----C-----C---HHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHH
Q 038852 314 ----M-----T---PATCNTLLEVLLKHE-------KKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSE 374 (851)
Q Consensus 314 ----~-----~---~~~~~~Li~~~~~~g-------~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~ 374 (851)
| + ...|...+..-...+ ..+.+..+|++++..... +..+|...+..+...|+.++
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~------~~~lW~~ya~~~~~~~~~~~ 361 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF------APEIWFNMANYQGEKNTDST 361 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHHHHHSCCTT
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHhcCcHHH
Confidence 0 0 245665555433332 134567789999885333 78999999999999999999
Q ss_pred HH-HHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------CC------------CHHH
Q 038852 375 AI-ETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSL---------SP------------DVTT 432 (851)
Q Consensus 375 A~-~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p------------d~~~ 432 (851)
|+ ++|+++....+. +...|..++......|++++|.++|+++++... .| ...+
T Consensus 362 a~r~il~rAi~~~P~-----s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 362 VITKYLKLGQQCIPN-----SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp HHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 97 999999765444 677788899999999999999999999886310 12 1347
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHc-CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 038852 433 FRTLIDAYLKVERIDDALELFNRMVES-GLRVVVSFGTKVFNELITK-GKVAECAPILTKMGEKDPKPDFLIYDVVVRGL 510 (851)
Q Consensus 433 ~~~Ll~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~L~~~~~~~-g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~ 510 (851)
|...+....+.|+++.|..+|+++++. ... ...+|...+..-.+. ++.+.|.++|++.++. ..-+...|..++...
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 888888888999999999999999986 221 222332233333344 4599999999999887 333677778888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCC
Q 038852 511 CNEGLFDMSKDIVDQMMKYGVG--ITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPV 569 (851)
Q Consensus 511 ~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p 569 (851)
...|+.+.|..+|++++..... ....++..+++.-.+.|+.+.+.++.+++...+|+.+
T Consensus 515 ~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 8899999999999999986542 2456788889999999999999999999999998765
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-16 Score=169.97 Aligned_cols=252 Identities=13% Similarity=0.098 Sum_probs=172.6
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 038852 147 AAMYRAKRYDDAVALFKYFFDQADIVPN--IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA 224 (851)
Q Consensus 147 ~~~~~~g~~~~A~~l~~~~~~~~~~~pd--~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~ 224 (851)
+-.+..|++..|+..++++.. ..|+ ......++++|...|++++|+..++.. ..++..++..++..+...
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCC
Confidence 345567888888888876522 2233 234566778888888888888766541 334667778888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHH
Q 038852 225 GRIGEAVDLLRDMLSRQLGA-DSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQS 303 (851)
Q Consensus 225 g~~~~A~~l~~~m~~~g~~p-d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l 303 (851)
++.++|++.|++++..+..| +...+..++.+|...|++++|+++|++ ..+..++..++.+|.+.|++++|++.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888888888765333 566777788888888888888888876 23566777777778888888888888
Q ss_pred HHHHHHhcCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 038852 304 YKSLMERNFRMTPAT--CNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKK 381 (851)
Q Consensus 304 ~~~~~~~~~~~~~~~--~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 381 (851)
|+++++.+... ... ...++..+...|++++|+.+|+++++. .|+ +..+++.++.+|.+.|++++|++.|++
T Consensus 153 l~~~~~~~p~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~----~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 153 LKKMQDQDEDA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSP----TLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHCTTC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCC----CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhCcCc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88877765321 111 112223334457777777777777775 232 667777777777777777777777777
Q ss_pred hccCCCCCCCccCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhC
Q 038852 382 AGTHPKSKPFAMDVAGYNNIIARYCENEMLEE-AEKLLREISTK 424 (851)
Q Consensus 382 ~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~ 424 (851)
+....+. +..++..++.++...|+.++ +.++++++++.
T Consensus 226 al~~~p~-----~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 226 ALDKDSG-----HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHCTT-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHhCCC-----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 7665554 66667777777777777654 45666666654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-16 Score=164.69 Aligned_cols=227 Identities=15% Similarity=0.193 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-CC----HHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVG-PS----SNT 213 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~-p~----~~~ 213 (851)
...|..++..+...|++++|+++|+++++.. .+..+|..++.+|...|++++|++.|+++++..+.. ++ ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 3466777777888888888888888887764 466777888888888888888888888877754321 11 467
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH
Q 038852 214 YRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN 293 (851)
Q Consensus 214 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~ 293 (851)
|..++.+|...|++++|+++|+++++... + ...+.+.|++++|++.++++...... +..++..++.++..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~-------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHR--T-------ADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC--C-------HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCc--h-------hHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHH
Confidence 77888888888888888888888887532 3 23455667788888888887776544 56677777777888
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChH
Q 038852 294 QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFS 373 (851)
Q Consensus 294 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~ 373 (851)
.|++++|++.|+++++.+.. +..+|..++.+|...|++++|+.+|+++++.. |+ +..++..++.+|.+.|+++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~----~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PN----FVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHTTCHH
T ss_pred hcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HH----HHHHHHHHHHHHHHHhhHH
Confidence 88888888888887776543 55677778888888888888888888887753 32 5777888888888888888
Q ss_pred HHHHHHHHhccC
Q 038852 374 EAIETFKKAGTH 385 (851)
Q Consensus 374 ~A~~~~~~~~~~ 385 (851)
+|++.|+++...
T Consensus 225 ~A~~~~~~a~~~ 236 (258)
T 3uq3_A 225 SALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888777543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-16 Score=162.55 Aligned_cols=225 Identities=16% Similarity=0.210 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--C----HHHH
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA--D----SLVY 249 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p--d----~~~~ 249 (851)
..|..++..+...|++++|+++|+++++.+ .+..+|..++.+|...|++++|+++|+++++..... + ..+|
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 345555555555555555555555555544 244455555555555555555555555554432110 1 2344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q 038852 250 NNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKH 329 (851)
Q Consensus 250 ~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~ 329 (851)
..++.+|...|++++|++.|++ +++.... ...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~-----------------------------------a~~~~~~---------~~~~~~~ 118 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQK-----------------------------------SLTEHRT---------ADILTKL 118 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------------------------------HHHHCCC---------HHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHH-----------------------------------HHhcCch---------hHHHHHH
Confidence 4444444444444444444444 4443221 1223344
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcC
Q 038852 330 EKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENE 409 (851)
Q Consensus 330 g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g 409 (851)
|++++|+..+++++... |+ +..++..++.+|...|++++|+++|+++....+. +..+|..++.+|...|
T Consensus 119 ~~~~~a~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~~~~ 187 (258)
T 3uq3_A 119 RNAEKELKKAEAEAYVN--PE----KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-----DARGYSNRAAALAKLM 187 (258)
T ss_dssp HHHHHHHHHHHHHHHCC--HH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHcC--cc----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-----cHHHHHHHHHHHHHhC
Confidence 55555666555555532 11 3445556666666666666666666665544333 4555666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 038852 410 MLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVES 459 (851)
Q Consensus 410 ~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 459 (851)
++++|+..|+++++.. ..+..+|..++.+|.+.|++++|+++|+++++.
T Consensus 188 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 188 SFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 6666666666665542 224556666666666666666666666666553
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-16 Score=171.93 Aligned_cols=249 Identities=13% Similarity=0.063 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK-VDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~-~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
..+|+.+..++.+.|++++|+++|+++++... .+..+|+.++.+|...|+ +++|+..|+++++.++. +..+|+.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P--~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~--~~~a~~~~ 172 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA--ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK--NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc--cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC--CHHHHHHH
Confidence 45677788888888999999999999887643 357788888888999996 99999999999988877 78889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH-cCC
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN-QGK 296 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~-~g~ 296 (851)
+.++...|++++|+..|+++++.... +..+|..++.++.+.|++++|+..|+++++.+.. +...|+.++.+|.+ .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999988776 8888999999999999999999999999888776 77888888888888 555
Q ss_pred HHHH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHc
Q 038852 297 DKEA-----MQSYKSLMERNFRMTPATCNTLLEVLLKHE--KKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH 369 (851)
Q Consensus 297 ~~~A-----~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~ 369 (851)
.++| ++.|+++++.++. +...|+.+..+|...| ++++|++.+.++ + ..|+ +..++..++.+|.+.
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~----~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHS----SPYLIAFLVDIYEDM 322 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCC----CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCC----CHHHHHHHHHHHHHH
Confidence 4666 5788888887653 5567888888888877 588888888877 3 3443 677888888888886
Q ss_pred C---------ChHHHHHHHHHh-ccCCCCCCCccCHHHHHHHHHHHH
Q 038852 370 G---------KFSEAIETFKKA-GTHPKSKPFAMDVAGYNNIIARYC 406 (851)
Q Consensus 370 g---------~~~~A~~~~~~~-~~~~~~~~~~~d~~~~~~li~~~~ 406 (851)
| .+++|+++|+++ .+..+. ....|..++..+.
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l~~~~DP~-----r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEILAKEKDTI-----RKEYWRYIGRSLQ 364 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHTTCGG-----GHHHHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHHhCch-----hHHHHHHHHHHHH
Confidence 4 258888888888 555443 4555666655543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-16 Score=171.68 Aligned_cols=248 Identities=11% Similarity=0.088 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGR-IGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
..+|+.+..++...|++++|++.|+++++.++. +..+|+.++.++...|+ +++|++.|+++++.... +..+|..++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~--~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc--CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 567888999999999999999999999999877 88899999999999997 99999999999999877 889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-CCCH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLK-HEKK 332 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~-~g~~ 332 (851)
.+|...|++++|+..|+++++.+.. +..+|..+..++.+.|++++|++.|+++++.++. +...|+.++.+|.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999998877 7889999999999999999999999999998764 56788889999988 5654
Q ss_pred HHH-----HHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcC--ChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHH
Q 038852 333 EEA-----QALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHG--KFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARY 405 (851)
Q Consensus 333 ~~A-----~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~ 405 (851)
++| ++.|++++.. .|+ +..+|+.++.+|...| ++++|++.+.++ ...+. +...+..++.+|
T Consensus 252 ~eA~~~~el~~~~~Al~l--~P~----~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~-----~~~al~~La~~~ 319 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL--VPH----NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS-----SPYLIAFLVDIY 319 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH--STT----CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC-----CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--CCC----CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC-----CHHHHHHHHHHH
Confidence 777 5888888884 344 7888888888888877 688888888887 43333 677788888888
Q ss_pred HhcC---------CHHHHHHHHHHH-HhCCCCCC-HHHHHHHHHHHH
Q 038852 406 CENE---------MLEEAEKLLREI-STKSLSPD-VTTFRTLIDAYL 441 (851)
Q Consensus 406 ~~~g---------~~~~A~~l~~~m-~~~g~~pd-~~~~~~Ll~~~~ 441 (851)
.+.| .+++|+++|+++ .+. .|+ ...|..++..+.
T Consensus 320 ~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 320 EDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 8764 257888888887 543 333 455665555543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-16 Score=160.53 Aligned_cols=208 Identities=19% Similarity=0.188 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
+...+..+...+.+.|++++|+..|+++++..+ .+...|..++.++...|++++|+..|+++++.+|. +..+|..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~l 79 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENP--QDPEALYWLARTQLKLGLVNPALENGKTLVARTPR--YLGGYMVL 79 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHH
Confidence 334444555555555555555555555544321 23444555555555555555555555555555444 44455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCH
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKD 297 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~ 297 (851)
+.+|...+. .. .+ .+...|++++|+..|+++++.+.. +..++..+..+|...|++
T Consensus 80 g~~~~~~~~------------~~---~~---------~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~ 134 (217)
T 2pl2_A 80 SEAYVALYR------------QA---ED---------RERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGER 134 (217)
T ss_dssp HHHHHHHHH------------TC---SS---------HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhh------------hh---hh---------hcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCh
Confidence 555554400 00 00 000004444444444444443332 333444444444444444
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHH
Q 038852 298 KEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIE 377 (851)
Q Consensus 298 ~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~ 377 (851)
++|++.|+++++.+ .+...+..++.+|...|++++|+..|+++++.. |+ +..++..++.++...|++++|++
T Consensus 135 ~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~----~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 135 DKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--PK----DLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TT----CHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC----ChHHHHHHHHHHHHccCHHHHHH
Confidence 44444444444443 334444445555555555555555555555432 22 44455555555555555555555
Q ss_pred HHHHh
Q 038852 378 TFKKA 382 (851)
Q Consensus 378 ~~~~~ 382 (851)
.|+++
T Consensus 207 ~~~~~ 211 (217)
T 2pl2_A 207 AAALE 211 (217)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.8e-16 Score=157.47 Aligned_cols=195 Identities=15% Similarity=0.121 Sum_probs=154.3
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
..+..+...+.+.|++++|+..|++++... +.+...+..+..++.+.|++++|+..|+++++..+ .+...|..++.+
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~ 82 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP--RYLGGYMVLSEA 82 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHH
Confidence 457788999999999999999999998665 44788999999999999999999999999988653 467889999999
Q ss_pred HHHc-----------CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 185 YCDE-----------GKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 185 ~~~~-----------g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
|... |++++|+..|+++++.+|. +..+|..++.+|...|++++|++.|+++++.. .+...+..++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPR--YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 9999 9999999999999888776 77888888889999999999999999988887 4788888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSL 307 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~ 307 (851)
.+|...|++++|+..|+++++.... +..++..++.++.+.|++++|++.|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888888888888888877654 5566666666666677777776666654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-15 Score=159.39 Aligned_cols=248 Identities=12% Similarity=0.103 Sum_probs=188.6
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--CHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVP--NIVSYNNLIN 183 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~p--d~~~~~~Li~ 183 (851)
.+...+..+...|++++|+.+|++++.... .+..++..++.+|...|++++|++.|+++++. +..+ ...+|..++.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHH
Confidence 466778888999999999999999887653 34557888888889999999999999998773 2222 2446888899
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 038852 184 TYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLE 263 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~ 263 (851)
+|...|++++|++.|+++++.++. +..+|..++.+|...|++++|++.|+++++.... +..+|..++..+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT--RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988766 6678899999999999999999999998887554 7788888884444556999
Q ss_pred HHHHHHHHHHhcCCccchhhHHHHHHHHHHcCC---HHHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHhCCCHH
Q 038852 264 KANELFDELKQRCLVYDGVVNATFMEWWFNQGK---DKEAMQSYKSLMERN---FRM----TPATCNTLLEVLLKHEKKE 333 (851)
Q Consensus 264 ~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~---~~~A~~l~~~~~~~~---~~~----~~~~~~~Li~~~~~~g~~~ 333 (851)
+|++.|+++++.... +...+..++.++...|+ +++|+..|+++++.. ... ...+|..++.+|...|+++
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999998887655 56677777788888887 777888888877653 111 1246677788888888888
Q ss_pred HHHHHHHHHHHcCCCCCCCccCHHHHHHHHHH
Q 038852 334 EAQALFEQMLDNHQPPNIQAVNSDTFNIMVNE 365 (851)
Q Consensus 334 ~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~ 365 (851)
+|+++|+++++.. |+ +..++..+...
T Consensus 239 ~A~~~~~~al~~~--p~----~~~a~~~l~~~ 264 (272)
T 3u4t_A 239 KADAAWKNILALD--PT----NKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHHHC--TT----CHHHHHHHC--
T ss_pred HHHHHHHHHHhcC--cc----HHHHHHHhhhh
Confidence 8888888887743 33 55555554443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=176.18 Aligned_cols=285 Identities=12% Similarity=0.053 Sum_probs=161.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CC-CCH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN--IVSYNNLINTYCDEGKVDEGMNVFRRIIETAP---VG-PSS 211 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd--~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~---~~-p~~ 211 (851)
....+..++..+...|++++|+.+|+++++.....+. ..+|..++.+|...|++++|+..|+++++... .. ...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 4445556666666677777777777766654321111 24566666677777777777777766554311 10 023
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 038852 212 NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG-AD----SLVYNNLISGFLNLGN--------------------LEKAN 266 (851)
Q Consensus 212 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~~~~~Li~~~~~~g~--------------------~~~A~ 266 (851)
.++..++.+|...|++++|++.|+++++.... .+ ..++..++.+|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 45666677777777777777777766653110 01 3366667777777777 77777
Q ss_pred HHHHHHHhcC-----CccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHhCCCHHHHH
Q 038852 267 ELFDELKQRC-----LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRM-----TPATCNTLLEVLLKHEKKEEAQ 336 (851)
Q Consensus 267 ~~~~~~~~~~-----~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~-----~~~~~~~Li~~~~~~g~~~~A~ 336 (851)
++|+++++.. ......++..++.+|...|++++|+++|+++++..... ...++..++.+|...|++++|+
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 7776655421 11123456666677777777777777777766542111 1236667777788888888888
Q ss_pred HHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCC-CccCHHHHHHHHHHHHhcCCHHHHH
Q 038852 337 ALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKP-FAMDVAGYNNIIARYCENEMLEEAE 415 (851)
Q Consensus 337 ~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~d~~~~~~li~~~~~~g~~~~A~ 415 (851)
.+|+++++.............++..++.+|...|++++|+++|+++.......+ ......++..++.+|...|++++|+
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888777653111000000144566677777777777777777766543211111 0001334445555555555555555
Q ss_pred HHHHHHH
Q 038852 416 KLLREIS 422 (851)
Q Consensus 416 ~l~~~m~ 422 (851)
..|++.+
T Consensus 328 ~~~~~al 334 (406)
T 3sf4_A 328 HFAEKHL 334 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=176.24 Aligned_cols=286 Identities=15% Similarity=0.132 Sum_probs=205.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC---CC
Q 038852 173 PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS--SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ--LG---AD 245 (851)
Q Consensus 173 pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~--~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g--~~---pd 245 (851)
.....+..++..+...|++++|+.+|+++++..+..+. ..+|..++.+|...|++++|+++|+++++.. .. ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 45677888899999999999999999999998655222 3578899999999999999999999886541 11 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc-----cchhhHHHHHHHHHHcCC--------------------HHHH
Q 038852 246 SLVYNNLISGFLNLGNLEKANELFDELKQRCLV-----YDGVVNATFMEWWFNQGK--------------------DKEA 300 (851)
Q Consensus 246 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~-----~d~~~~~~li~~~~~~g~--------------------~~~A 300 (851)
..++..++.+|...|++++|+..|+++++.... ....++..++.+|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 467888999999999999999999988764221 124578888889999999 9999
Q ss_pred HHHHHHHHHhcC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHH
Q 038852 301 MQSYKSLMERNF-----RMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEA 375 (851)
Q Consensus 301 ~~l~~~~~~~~~-----~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A 375 (851)
+++|+++++... .....++..++.+|...|++++|+++|+++++.............++..++.+|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 999988765411 112346778888899999999999999888763211110000234778888888888888888
Q ss_pred HHHHHHhccCCCCCCC-ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCCHHHH
Q 038852 376 IETFKKAGTHPKSKPF-AMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLS-PD----VTTFRTLIDAYLKVERIDDA 449 (851)
Q Consensus 376 ~~~~~~~~~~~~~~~~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~~~~~Ll~~~~~~g~~~~A 449 (851)
+.+|+++.......+. .....++..++.+|...|++++|+..|+++++.... .+ ..++..++.+|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888877543221110 001456677777777888888888877776542110 11 44666777777777777777
Q ss_pred HHHHHHHHH
Q 038852 450 LELFNRMVE 458 (851)
Q Consensus 450 ~~~~~~m~~ 458 (851)
+++|+++++
T Consensus 327 ~~~~~~al~ 335 (406)
T 3sf4_A 327 MHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777665
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-15 Score=157.56 Aligned_cols=232 Identities=11% Similarity=0.102 Sum_probs=134.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Q 038852 250 NNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN--FRMTPATCNTLLEVLL 327 (851)
Q Consensus 250 ~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--~~~~~~~~~~Li~~~~ 327 (851)
..++..+...|++++|+.+|+++++.... +..++..++.+|...|++++|++.|+++++.. ......+|..++.+|.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 33444444444444444444444443332 33344444444445555555555555444421 1112234666777777
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHh
Q 038852 328 KHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCE 407 (851)
Q Consensus 328 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~ 407 (851)
..|++++|++.|+++++.... +..++..++.+|...|++++|+++|+++....+. +...|..++..+..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTT------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-----DPKVFYELGQAYYY 154 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-----CHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-----cHHHHHHHHHHHHH
Confidence 777777777777777764322 5567777777777777777777777777665443 56666666633334
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCc-cc------hhHHHHHHHHHHH
Q 038852 408 NEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVER---IDDALELFNRMVESGLR-VV------VSFGTKVFNELIT 477 (851)
Q Consensus 408 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~---~~~A~~~~~~m~~~~~~-~~------~~~~~~L~~~~~~ 477 (851)
.+++++|++.|+++++.. ..+...+..++.++...|+ +++|+..|+++++.... ++ ...+..+..+|..
T Consensus 155 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 457777777777777642 2245666677777777776 66777777777654211 11 1334445566666
Q ss_pred cCCHHHHHHHHHHHhhC
Q 038852 478 KGKVAECAPILTKMGEK 494 (851)
Q Consensus 478 ~g~~~~A~~ll~~m~~~ 494 (851)
.|++++|++.|+++++.
T Consensus 234 ~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 234 NRDKVKADAAWKNILAL 250 (272)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 66666666666666654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-16 Score=175.89 Aligned_cols=283 Identities=14% Similarity=0.086 Sum_probs=150.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---C-CCCCHHHHHHH
Q 038852 144 AIIAAMYRAKRYDDAVALFKYFFDQADIVPN--IVSYNNLINTYCDEGKVDEGMNVFRRIIETA---P-VGPSSNTYRHL 217 (851)
Q Consensus 144 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd--~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~---~-~~p~~~~~~~L 217 (851)
.+...+...|++++|+++|+++++.....++ ..+|..++.+|...|++++|++.|+++++.. + ......++..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3444555556666666666655554221111 1345555555566666666666665554431 0 00123455556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHhc
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQ-----LGADSLVYNNLISGFLNLGN-----------------LEKANELFDELKQR 275 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g-----~~pd~~~~~~Li~~~~~~g~-----------------~~~A~~~~~~~~~~ 275 (851)
+.+|...|++++|+++|+++++.. ......++..++.+|...|+ +++|+++|++.++.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 666666666666666666555431 00123455666666666666 66666666655432
Q ss_pred C-----CccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-C----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038852 276 C-----LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRM-T----PATCNTLLEVLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 276 ~-----~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~-~----~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 345 (851)
. ......++..++.+|...|++++|+++|+++++..... + ..++..++.+|...|++++|+++|++++..
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1 11123455566666667777777777766665432110 1 135667777788888888888888777653
Q ss_pred CCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038852 346 HQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKS 425 (851)
Q Consensus 346 ~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 425 (851)
............++..++.+|...|++++|+.+|+++...... .++
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------------------~~~--------------- 338 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE-------------------LGD--------------- 338 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------------HTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------------------CCC---------------
Confidence 2110000001345566666666666666666666655321000 000
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 426 LSPDVTTFRTLIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 426 ~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
......++..++.+|...|++++|+++|+++++..
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 00013355666677777777777777777776653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-16 Score=174.96 Aligned_cols=280 Identities=13% Similarity=0.111 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C---CCCHHH
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS--SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ--L---GADSLV 248 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~--~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g--~---~pd~~~ 248 (851)
..+..++..+...|++++|+.+|+++++..+..+. ..+|..++.+|...|++++|+++|+++++.. . .....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 44566788899999999999999999998755221 1578899999999999999999999987641 1 113467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CccchhhHHHHHHHHHHcCC-----------------HHHHHHHHHH
Q 038852 249 YNNLISGFLNLGNLEKANELFDELKQRC-----LVYDGVVNATFMEWWFNQGK-----------------DKEAMQSYKS 306 (851)
Q Consensus 249 ~~~Li~~~~~~g~~~~A~~~~~~~~~~~-----~~~d~~~~~~li~~~~~~g~-----------------~~~A~~l~~~ 306 (851)
+..++.+|...|++++|+++|+++++.. ......++..++.+|...|+ +++|+++|++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 8889999999999999999999887642 12235577778888888888 7888877777
Q ss_pred HHHhcC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 038852 307 LMERNF-----RMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKK 381 (851)
Q Consensus 307 ~~~~~~-----~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 381 (851)
+++... .....++..++.+|...|++++|+++|+++++...... +..
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~------------------------ 260 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG----DRA------------------------ 260 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----CHH------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC----CcH------------------------
Confidence 654311 11123566677777777777777777777665211000 000
Q ss_pred hccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 382 AGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSL--S---PDVTTFRTLIDAYLKVERIDDALELFNRM 456 (851)
Q Consensus 382 ~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~---pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m 456 (851)
....++..++.+|...|++++|+.+|+++++... . ....++..++.+|...|++++|+++|+++
T Consensus 261 -----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 261 -----------AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp -----------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0122344444445555555555555444432110 0 11456677888888888888888888887
Q ss_pred HHcCC-----ccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 038852 457 VESGL-----RVVVSFGTKVFNELITKGKVAECAPILTKMGEK 494 (851)
Q Consensus 457 ~~~~~-----~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~ 494 (851)
++... ......+..+..+|...|++++|+++|+++++.
T Consensus 330 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 330 LAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 76421 112345566889999999999999999999876
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-14 Score=151.93 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYF 165 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~ 165 (851)
++..+...|...|++++|+++|+++
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a 32 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKA 32 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3333333444444444444444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-14 Score=150.56 Aligned_cols=225 Identities=14% Similarity=0.101 Sum_probs=130.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD----AGRIGEAVDLLRDMLSRQLGADSLVY 249 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~ 249 (851)
+..++..++..|...|++++|++.|+++++.+ +..++..|+.+|.. .+++++|+++|+++.+.+ +..++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34455555555555555555555555555421 34455555555555 555555555555555543 44445
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 038852 250 NNLISGFLN----LGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEV 325 (851)
Q Consensus 250 ~~Li~~~~~----~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~ 325 (851)
..++.+|.. .+++++|+++|+++.+ .+ +...+..+..+
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-----------------------------------~~---~~~a~~~lg~~ 119 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACD-----------------------------------LK---YAEGCASLGGI 119 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHH-----------------------------------TT---CHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHH-----------------------------------cC---CccHHHHHHHH
Confidence 555555555 4555555555544444 32 33455556666
Q ss_pred HHh----CCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH----cCChHHHHHHHHHhccCCCCCCCccCHHH
Q 038852 326 LLK----HEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK----HGKFSEAIETFKKAGTHPKSKPFAMDVAG 397 (851)
Q Consensus 326 ~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~d~~~ 397 (851)
|.. .+++++|+++|+++++.+ +..++..++.+|.. .+++++|+++|+++.+.. +...
T Consensus 120 ~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~a 184 (273)
T 1ouv_A 120 YHDGKVVTRDFKKAVEYFTKACDLN--------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-------DSPG 184 (273)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHH
Confidence 665 666666666666666532 34556666666666 666666666666665431 4555
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC
Q 038852 398 YNNIIARYCE----NEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLK----VERIDDALELFNRMVESGL 461 (851)
Q Consensus 398 ~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~----~g~~~~A~~~~~~m~~~~~ 461 (851)
+..+..+|.. .+++++|++.|++..+.+ +...+..|+.+|.+ .+++++|+++|+++.+.+.
T Consensus 185 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 185 CFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 6666666666 677777777777766653 35566667777776 7777777777777777653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.4e-16 Score=165.92 Aligned_cols=290 Identities=15% Similarity=0.077 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---C-CCCHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN--IVSYNNLINTYCDEGKVDEGMNVFRRIIETAP---V-GPSSNTY 214 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd--~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~---~-~p~~~~~ 214 (851)
.+......+...|++++|+.+|+++++.....+. ..+|..++.+|...|++++|+++|+++++... . .....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3444455555666666666666666554221111 24455556666666666666666665543310 0 0013344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCC-------------HHHHHHHHHHHHhcC
Q 038852 215 RHLTKGFVDAGRIGEAVDLLRDMLSRQLG-AD----SLVYNNLISGFLNLGN-------------LEKANELFDELKQRC 276 (851)
Q Consensus 215 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~~~~~Li~~~~~~g~-------------~~~A~~~~~~~~~~~ 276 (851)
..++.+|...|++++|++.|+++++.... .+ ..++..++.+|...|+ .++|.+.
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------- 158 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA-------- 158 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH--------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH--------
Confidence 55555555555555555555554442110 01 1234444444444444 0000000
Q ss_pred CccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCC
Q 038852 277 LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN-----FRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNI 351 (851)
Q Consensus 277 ~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-----~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 351 (851)
+++|+++|+++++.. ......++..++.++...|++++|+++|+++++.......
T Consensus 159 --------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 159 --------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred --------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 444444444433210 0001235666677777777777777777776642111000
Q ss_pred CccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCC-CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC
Q 038852 352 QAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKP-FAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLS-PD 429 (851)
Q Consensus 352 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd 429 (851)
......++..++.+|...|++++|+++|+++........ ......++..++.+|...|++++|+..++++++.... .+
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 000123566667777777777777777766543211100 0001334455555555555655555555554432000 01
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 430 ----VTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 430 ----~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
..++..++.+|.+.|++++|.++|+++++
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 22444455555555555555555555544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-15 Score=164.26 Aligned_cols=279 Identities=18% Similarity=0.132 Sum_probs=206.7
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcC---CC-CCCHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPT----VFTCNAIIAAMYRAKRYDDAVALFKYFFDQA---DI-VPNIVS 177 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~---~~-~pd~~~ 177 (851)
.+......+...|++++|+.+|++++..... + ..++..++..|...|++++|+++|+++++.. +. .....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4566788999999999999999999987533 3 4678889999999999999999999876531 11 112567
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCC--------------------HHHHHHH
Q 038852 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS----SNTYRHLTKGFVDAGR--------------------IGEAVDL 233 (851)
Q Consensus 178 ~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~----~~~~~~Li~~~~~~g~--------------------~~~A~~l 233 (851)
+..++.+|...|++++|++.|+++++..+...+ ..++..++.+|...|+ +++|+++
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 889999999999999999999998775432223 3478889999999999 9999999
Q ss_pred HHHHHhcC--CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc-----cchhhHHHHHHHHHHcCCHHHHHHH
Q 038852 234 LRDMLSRQ--LG---ADSLVYNNLISGFLNLGNLEKANELFDELKQRCLV-----YDGVVNATFMEWWFNQGKDKEAMQS 303 (851)
Q Consensus 234 ~~~m~~~g--~~---pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~-----~d~~~~~~li~~~~~~g~~~~A~~l 303 (851)
++++++.. .. ....++..++.+|...|++++|+++|+++++.... ....++..++.+|...|++++|+++
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 98876531 11 12357888899999999999999999988754211 1234777888888899999999999
Q ss_pred HHHHHHhcCCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHH
Q 038852 304 YKSLMERNFRM-----TPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIET 378 (851)
Q Consensus 304 ~~~~~~~~~~~-----~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~ 378 (851)
|+++++..... ...++..++.+|...|++++|+.+|++++..............++..++.+|.+.|++++|+.+
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 98877643211 1356777888888889999888888887653111000000234666777777777777777777
Q ss_pred HHHhccC
Q 038852 379 FKKAGTH 385 (851)
Q Consensus 379 ~~~~~~~ 385 (851)
|+++...
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 7776554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-15 Score=157.77 Aligned_cols=249 Identities=13% Similarity=0.060 Sum_probs=112.4
Q ss_pred CChhHHHHHHHHHHHcCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038852 153 KRYDDAVALFKYFFDQADIV--PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEA 230 (851)
Q Consensus 153 g~~~~A~~l~~~~~~~~~~~--pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A 230 (851)
|++++|++.|+++++..... .+..+|..++.+|...|++++|++.|+++++.++. +..+|..++.+|...|++++|
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHccCHHHH
Confidence 44444444444444321111 12334444555555555555555555555554433 444555555555555555555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038852 231 VDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMER 310 (851)
Q Consensus 231 ~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 310 (851)
+++|+++++.... +..++..++.+|.+.|++++|+++|+++++.... ......++..+...|++++|+.+|++++..
T Consensus 97 ~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN--DPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 5555555554332 3444555555555555555555555555443322 111122222233345555555555444443
Q ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCC
Q 038852 311 NFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKP 390 (851)
Q Consensus 311 ~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 390 (851)
... +...+. ++..+...++.++|++.+++++..... ....+..++..++.+|.+.|++++|+.+|+++....+.
T Consensus 174 ~~~-~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 247 (275)
T 1xnf_A 174 SDK-EQWGWN-IVEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-- 247 (275)
T ss_dssp SCC-CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT--
T ss_pred CCc-chHHHH-HHHHHHHhcCHHHHHHHHHHHhccccc--ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch--
Confidence 322 112222 444455555566666666655432110 00001345556666666666666666666666544322
Q ss_pred CccCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 391 FAMDVAGYNNIIARYCENEMLEEAEKLL 418 (851)
Q Consensus 391 ~~~d~~~~~~li~~~~~~g~~~~A~~l~ 418 (851)
+ +.....++...|++++|++.+
T Consensus 248 ---~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 ---N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---T---CHHHHHHHHHHHHHHHC----
T ss_pred ---h---HHHHHHHHHHHHHHHhhHHHH
Confidence 1 222233444555555555444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-15 Score=159.12 Aligned_cols=247 Identities=14% Similarity=0.036 Sum_probs=197.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChH
Q 038852 116 RAGDLDAASYLARQAVFSRIR---PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVD 192 (851)
Q Consensus 116 ~~g~~~~A~~l~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~ 192 (851)
..|++++|+..+++++..... .+..+|..++.+|...|++++|+++|+++++... .+..+|..++.+|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHccCHH
Confidence 357899999999999875321 2467889999999999999999999999988643 46889999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 193 EGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDEL 272 (851)
Q Consensus 193 ~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~ 272 (851)
+|+++|+++++.++. +..+|..++.+|...|++++|+++|+++++.... +. .+..++..+...|++++|+.+|+++
T Consensus 95 ~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~-~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT--YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DP-FRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHCTT--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH-HHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc--ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-Ch-HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999998766 6789999999999999999999999999987544 33 3444555667789999999999988
Q ss_pred HhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 038852 273 KQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRM---TPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPP 349 (851)
Q Consensus 273 ~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~---~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p 349 (851)
...... +... ..++..+...++.++|++.++++++..... +..+|..++.+|...|++++|+.+|++++... |
T Consensus 171 ~~~~~~-~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKSDK-EQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHSCC-CSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcCCc-chHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 876543 3333 347777888899999999999887654321 24678889999999999999999999999853 3
Q ss_pred CCCccCHHHHHHHHHHHHHcCChHHHHHHH
Q 038852 350 NIQAVNSDTFNIMVNECFKHGKFSEAIETF 379 (851)
Q Consensus 350 ~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~ 379 (851)
+ + +.....++...|++++|++.+
T Consensus 247 ~----~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 H----N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T----T---CHHHHHHHHHHHHHHHC----
T ss_pred h----h---HHHHHHHHHHHHHHHhhHHHH
Confidence 2 2 333466777889999988876
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-15 Score=152.52 Aligned_cols=200 Identities=14% Similarity=0.175 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
...|..++..+...|++++|+.+|+++++... .+..++..++.+|...|++++|+++|+++++..+. +..++..++
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la 98 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK--EDAIPYINFANLLSSVNELERALAFYDKALELDSS--AATAYYGAG 98 (243)
T ss_dssp -------------------CCTTHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--chHHHHHHH
Confidence 34455555556666666666666666654321 24555666666666666666666666666665443 555666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHH
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDK 298 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 298 (851)
.+|...|++++|+++|+++++.... +..++..++.+|.+.|++++|+++|+++++.... +..++..++.+|.+.|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666666665433 5556666666666666666666666666655433 4455555556666666666
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038852 299 EAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 299 ~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 345 (851)
+|+++|+++++... .+..++..++.+|...|++++|+++|+++++.
T Consensus 177 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 66666666555542 23455666666666666666666666666653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-14 Score=143.17 Aligned_cols=203 Identities=12% Similarity=0.009 Sum_probs=150.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
+..+|..++..+...|++++|+++|+++++... .+..+|..++.+|...|++++|+++|+++++..+. +..+|..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l 82 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP--KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD--SAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--ChHHHHHH
Confidence 455677777788888888888888888776532 35667778888888888888888888888877655 67778888
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcC
Q 038852 218 TKGFVDA-GRIGEAVDLLRDMLSRQLGA-DSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQG 295 (851)
Q Consensus 218 i~~~~~~-g~~~~A~~l~~~m~~~g~~p-d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g 295 (851)
+.+|... |++++|+++|+++++.+..+ +..++..++.+|...|++++|+++|+++++.... +..++..++.+|.+.|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcC
Confidence 8888888 88888888888887722222 3567777888888888888888888887776544 5667777777778888
Q ss_pred CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038852 296 KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 296 ~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 345 (851)
++++|+++|+++++.....+...+..++..+...|+.++|..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888887777655345566666777777778888887777777653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-15 Score=153.77 Aligned_cols=204 Identities=12% Similarity=0.108 Sum_probs=142.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
....|..++..+...|++++|+.+|+++++..+. +..++..++.+|...|++++|+++|+++++.... +..++..++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE--DAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence 4566788888888999999999999999887655 7788888999999999999999999998887654 778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKE 333 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~ 333 (851)
.+|...|++++|+++|+++++.... +..++..++.+|.+.|++++|+++|+++++... .+..++..++.++...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 8899999999999999888877654 566777777778888888888888887777653 34566777777777778888
Q ss_pred HHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCC
Q 038852 334 EAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKS 388 (851)
Q Consensus 334 ~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~ 388 (851)
+|+++|+++++.... +..++..++.+|...|++++|+++|+++....+.
T Consensus 177 ~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG------HADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCcc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 888888777765322 5667777777777777777777777777655443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-14 Score=147.57 Aligned_cols=200 Identities=12% Similarity=0.053 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
...|..++..+...|++++|+++|+++++... .+..+|..++.+|...|++++|+++|+++++..+. +..+|..++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP--SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR--NARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--cHHHHHHHH
Confidence 56677777777788888888888887766532 35667777777777888888888888877777654 666777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCH
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQLGA-DSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKD 297 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~ 297 (851)
.+|...|++++|+++|+++++.+..+ +..++..++.+|...|++++|+++|+++++.... +..++..++.+|...|++
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCH
Confidence 77777777777777777777622222 4456666777777777777777777776665433 344455555555555555
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 038852 298 KEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLD 344 (851)
Q Consensus 298 ~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 344 (851)
++|+++|+++++... .+...+..++.++...|++++|+++++++++
T Consensus 192 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 192 VPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555544332 2334444455555555555555555555544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-14 Score=146.98 Aligned_cols=200 Identities=11% Similarity=0.006 Sum_probs=119.7
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
.+..++..+...|++++|+.++++++... ..+..++..++.+|...|++++|+++|+++++... .+..+|..++.+|
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~ 115 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS--RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHHHH
Confidence 34455566666666666666666666543 23455666666666666666666666666655432 2455566666666
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGP-SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEK 264 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p-~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~ 264 (851)
...|++++|+++|+++++ .+..+ +..+|..++.+|...|++++|+++|+++++.... +..++..++.+|...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666655 11111 4455666666666666666666666666665433 55666666666666666666
Q ss_pred HHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 038852 265 ANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN 311 (851)
Q Consensus 265 A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~ 311 (851)
|+++|+++++.... +...+..++.++.+.|++++|.++++++++..
T Consensus 194 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 66666666654432 44555566666666666666666666666554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.67 E-value=6e-13 Score=155.89 Aligned_cols=416 Identities=7% Similarity=0.025 Sum_probs=293.7
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKR---YDDAVALFKYFFDQADIVPNIVSYNNL 181 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~~~~~~~~~pd~~~~~~L 181 (851)
..+..++..+.+.++++.+..+|++++..- +.....|...+....+.++ ++.+..+|++++......+++..|...
T Consensus 67 ~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Y 145 (679)
T 4e6h_A 67 FLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSY 145 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 356677888888899999999999999764 6678899999998888888 999999999998754334789999988
Q ss_pred HHHHHHcCCh--------HHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhcCC
Q 038852 182 INTYCDEGKV--------DEGMNVFRRIIETAPV-GP-SSNTYRHLTKGFV---------DAGRIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 182 i~~~~~~g~~--------~~A~~l~~~~~~~~~~-~p-~~~~~~~Li~~~~---------~~g~~~~A~~l~~~m~~~g~ 242 (851)
+....+.++. +...++|++++..-+. .+ +...|...+.... ..++++.+..+|++++....
T Consensus 146 l~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~ 225 (679)
T 4e6h_A 146 ITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPM 225 (679)
T ss_dssp HHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCcc
Confidence 8766666554 3455889988876555 44 4578888877654 23457889999999996432
Q ss_pred CCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHhc--CCc---------------c--------chhhH
Q 038852 243 GADSLVYNNLISGFLN-------------LGNLEKANELFDELKQR--CLV---------------Y--------DGVVN 284 (851)
Q Consensus 243 ~pd~~~~~~Li~~~~~-------------~g~~~~A~~~~~~~~~~--~~~---------------~--------d~~~~ 284 (851)
..-..+|......-.. ..+++.|..++.++... ++. | ....|
T Consensus 226 ~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW 305 (679)
T 4e6h_A 226 DCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIW 305 (679)
T ss_dssp SSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHH
Confidence 2122344322221111 12344555555553321 110 0 02345
Q ss_pred HHHHHHHHHcC-------CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHcCCCCCCCccCH
Q 038852 285 ATFMEWWFNQG-------KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQ-ALFEQMLDNHQPPNIQAVNS 356 (851)
Q Consensus 285 ~~li~~~~~~g-------~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~-~l~~~m~~~~~~p~~~~~~~ 356 (851)
...+..-...+ ..+.+..+|++++.... .+...|...+..+...|+.++|. ++|++++... |. +.
T Consensus 306 ~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--P~----s~ 378 (679)
T 4e6h_A 306 LEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--PN----SA 378 (679)
T ss_dssp HHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--TT----CH
T ss_pred HHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--CC----CH
Confidence 55554433322 13456678999888754 46789999999999999999997 9999998743 33 67
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhccCCC--------CCCC--------c-cCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 357 DTFNIMVNECFKHGKFSEAIETFKKAGTHPK--------SKPF--------A-MDVAGYNNIIARYCENEMLEEAEKLLR 419 (851)
Q Consensus 357 ~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~--------~-~d~~~~~~li~~~~~~g~~~~A~~l~~ 419 (851)
..|..++..+.+.|++++|.++|++++.... ..+. . -...+|..++....+.|+++.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7888999999999999999999999865310 0000 0 023468888888888999999999999
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC
Q 038852 420 EISTK-SLSPDVTTFRTLIDAYLKV-ERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPK 497 (851)
Q Consensus 420 ~m~~~-g~~pd~~~~~~Ll~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~ 497 (851)
++++. +. ....+|...+..-.+. ++.+.|.++|+++++... .+..++...+......|+.+.|..+|++++.....
T Consensus 459 ~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 459 KCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 99875 21 1234444444444444 459999999999998743 34455556778888899999999999999987542
Q ss_pred C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038852 498 P--DFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG 530 (851)
Q Consensus 498 p--d~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g 530 (851)
+ ....|..+++.-...|+.+.+.++.+++.+.-
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2 34678888888889999999999999999864
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.8e-14 Score=141.55 Aligned_cols=203 Identities=12% Similarity=0.002 Sum_probs=157.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
+..+|..++.+|...|++++|+++|+++++..+. +..+|..++.+|...|++++|+++|+++++.... +..++..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK--NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence 4567888899999999999999999999988765 7788999999999999999999999999887655 778888999
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhcCCcc-chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Q 038852 254 SGFLNL-GNLEKANELFDELKQRCLVY-DGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEK 331 (851)
Q Consensus 254 ~~~~~~-g~~~~A~~~~~~~~~~~~~~-d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~ 331 (851)
.+|... |++++|+++|+++++....+ +..++..++.++...|++++|+++|+++++... .+...+..++.++...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCC
Confidence 999999 99999999999988722211 356677777778888888888888887777653 245667777777777888
Q ss_pred HHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccC
Q 038852 332 KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTH 385 (851)
Q Consensus 332 ~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 385 (851)
+++|+++|+++++.... + +...+..++..+...|+.++|..+++.+...
T Consensus 163 ~~~A~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEV-L----QADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCS-C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-C----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888777764320 1 5666677777777777777777777776543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-14 Score=160.56 Aligned_cols=236 Identities=10% Similarity=0.072 Sum_probs=154.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc------cchhhH
Q 038852 216 HLTKGFVDAGRIGEAVDLLRDMLSRQ--LG--A-DSLVYNNLISGFLNLGNLEKANELFDELKQRCLV------YDGVVN 284 (851)
Q Consensus 216 ~Li~~~~~~g~~~~A~~l~~~m~~~g--~~--p-d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~------~d~~~~ 284 (851)
.++..+...|++++|++.|+++++.- .. + ...++..++.+|...|++++|++.++++++.... ....++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 36667778888888888888887641 11 1 2357778888888888888888888887754211 123566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCCCCccC
Q 038852 285 ATFMEWWFNQGKDKEAMQSYKSLMERNFRM-----TPATCNTLLEVLLKHEKKEEAQALFEQMLDN----HQPPNIQAVN 355 (851)
Q Consensus 285 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~-----~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~----~~~p~~~~~~ 355 (851)
..++.+|...|++++|++.|+++++..... ...++..++.+|...|++++|++.|+++++. +..+. .
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~----~ 263 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS----L 263 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG----H
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh----H
Confidence 777778888888888888888777542211 1236777888888888888888888888762 11121 4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HH
Q 038852 356 SDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEM---LEEAEKLLREISTKSLSPD-VT 431 (851)
Q Consensus 356 ~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd-~~ 431 (851)
..++..++.+|.+.|++++|+++|+++.......+.......+..+...|...|+ +++|+.++++.. ..++ ..
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~ 340 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLED 340 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHH
Confidence 6678888888888888888888888765432111100112234556666666776 566666665541 1112 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 432 TFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 432 ~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
++..|+.+|...|++++|.++|+++++
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 556677777777777777777777665
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.8e-14 Score=155.19 Aligned_cols=175 Identities=11% Similarity=-0.014 Sum_probs=111.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC----Cc-cchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------CHH
Q 038852 249 YNNLISGFLNLGNLEKANELFDELKQRC----LV-YDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRM------TPA 317 (851)
Q Consensus 249 ~~~Li~~~~~~g~~~~A~~~~~~~~~~~----~~-~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~------~~~ 317 (851)
+..++..+...|++++|++.|+++++.. .. ....++..++.+|...|++++|++.++++++..... ...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 3447778888999999999999987641 11 134677888888888888888888888877642211 124
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCC-ccCHH
Q 038852 318 TCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPF-AMDVA 396 (851)
Q Consensus 318 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~d~~ 396 (851)
+++.++.+|...|++++|++.|+++++.....+.......++..++.+|...|++++|+++|+++......... .....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 67778888888888888888888877531111100002246677777777777777777777766542111000 11344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 397 GYNNIIARYCENEMLEEAEKLLREIST 423 (851)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 423 (851)
++..++.+|.+.|++++|...+++.++
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555666666666666666666655543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.59 E-value=8e-13 Score=141.36 Aligned_cols=222 Identities=10% Similarity=0.008 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHhcc-CCCCCCCccCHHH
Q 038852 333 EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK-------HGKF-------SEAIETFKKAGT-HPKSKPFAMDVAG 397 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~d~~~ 397 (851)
++|+.+|++++... |+ +..+|..++..+.. .|++ ++|+.+|+++.. ..+. +...
T Consensus 33 ~~a~~~~~~al~~~--p~----~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-----~~~~ 101 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GH----HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-----NMLL 101 (308)
T ss_dssp HHHHHHHHHHHHHH--TT----CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-----CHHH
T ss_pred HHHHHHHHHHHHHc--CC----CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-----cHHH
Confidence 68888999988753 33 78888888888763 5886 899999999987 4554 7788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHH-
Q 038852 398 YNNIIARYCENEMLEEAEKLLREISTKSLSPD-VT-TFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNE- 474 (851)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~-~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~- 474 (851)
|..++..+...|++++|.++|+++++. .|+ .. +|..++..+.+.|++++|+++|+++++.+......+ ...+..
T Consensus 102 ~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~-~~~a~~~ 178 (308)
T 2ond_A 102 YFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY-VTAALME 178 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH-HHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHH
Confidence 999999999999999999999999975 343 33 899999999999999999999999998764433232 222222
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CC--CCHHHHHHHHHHHHhcCCH
Q 038852 475 LITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG-VG--ITPALQDFVRETFGKAGRG 551 (851)
Q Consensus 475 ~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g-~~--~~~~~~~~L~~~~~~~G~~ 551 (851)
+...|++++|.++|+++++.... +...|..++..+.+.|++++|+.+|+++++.. +. ....++..++.++.+.|++
T Consensus 179 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 179 YYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 22379999999999999886443 67888889999999999999999999999863 33 3567888889999999999
Q ss_pred HHHHHHHHhhhhcCCCCC
Q 038852 552 EEIERVLNADRWGYAAPV 569 (851)
Q Consensus 552 ~eA~~ll~~~~~~~~~~p 569 (851)
++|..+++++...+|+..
T Consensus 258 ~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 258 ASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHccccc
Confidence 999999999998888644
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.59 E-value=6.1e-13 Score=142.28 Aligned_cols=221 Identities=10% Similarity=0.065 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-cCCCCCHHHHHHHHHHH
Q 038852 192 DEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD-------AGRI-------GEAVDLLRDMLS-RQLGADSLVYNNLISGF 256 (851)
Q Consensus 192 ~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~-------~g~~-------~~A~~l~~~m~~-~g~~pd~~~~~~Li~~~ 256 (851)
++|+.+|+++++.++. +...|..++..+.. .|++ ++|+.+|+++++ .... +...|..++..+
T Consensus 33 ~~a~~~~~~al~~~p~--~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 4566666666665544 55566666655543 2443 455555555554 2222 344444555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHH
Q 038852 257 LNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQ 336 (851)
Q Consensus 257 ~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~ 336 (851)
.+.|++++|+++|+++++ ..+.....+|..++..+.+.|++++|+
T Consensus 110 ~~~~~~~~A~~~~~~al~-----------------------------------~~p~~~~~~~~~~~~~~~~~~~~~~A~ 154 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLA-----------------------------------IEDIDPTLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp HHTTCHHHHHHHHHHHHT-----------------------------------SSSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HhcCCHHHHHHHHHHHHh-----------------------------------ccccCccHHHHHHHHHHHHhcCHHHHH
Confidence 555555555555554444 322111125666666666666666666
Q ss_pred HHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH-cCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHH
Q 038852 337 ALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK-HGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAE 415 (851)
Q Consensus 337 ~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~ 415 (851)
.+|+++++.. |. +..+|...+..... .|++++|+++|+++....+. +...|..++..+.+.|++++|+
T Consensus 155 ~~~~~a~~~~--p~----~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~g~~~~A~ 223 (308)
T 2ond_A 155 MIFKKAREDA--RT----RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-----IPEYVLAYIDYLSHLNEDNNTR 223 (308)
T ss_dssp HHHHHHHTST--TC----CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHhcC--CC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHCCCHHHHH
Confidence 6666666532 21 33444444333222 57777777777776655443 5666777777777777777777
Q ss_pred HHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 038852 416 KLLREISTKS-LSP--DVTTFRTLIDAYLKVERIDDALELFNRMVESGL 461 (851)
Q Consensus 416 ~l~~~m~~~g-~~p--d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~ 461 (851)
.+|++++... +.| ....|..++..+.+.|++++|..+++++++...
T Consensus 224 ~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 224 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 7777777642 233 356777777777777777778777777776544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.8e-14 Score=158.80 Aligned_cols=217 Identities=11% Similarity=0.061 Sum_probs=174.5
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038852 153 KRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKV-DEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAV 231 (851)
Q Consensus 153 g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~-~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~ 231 (851)
+++++++..+++..... ..+...|..++.+|...|++ ++|++.|+++++.++. +..+|..++.+|...|++++|+
T Consensus 82 ~~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE--LVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHH
Confidence 34667777777764432 24678888999999999999 9999999999998766 7889999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHc--------
Q 038852 232 DLLRDMLSRQLGADSLVYNNLISGFLNL---------GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQ-------- 294 (851)
Q Consensus 232 ~l~~~m~~~g~~pd~~~~~~Li~~~~~~---------g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~-------- 294 (851)
+.|+++++.. |+..++..++.+|... |++++|++.|+++++.... +...+..++.+|...
T Consensus 158 ~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 158 TCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999875 4578888899999998 8999999999998887665 677888888888887
Q ss_pred CCHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCCh
Q 038852 295 GKDKEAMQSYKSLMERNFR--MTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKF 372 (851)
Q Consensus 295 g~~~~A~~l~~~~~~~~~~--~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~ 372 (851)
|++++|++.|+++++.+.. .+...|..++.+|...|++++|++.|+++++.. |+ +..++..++.++...|++
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~----~~~a~~~l~~~~~~lg~~ 308 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PA----WPEPQQREQQLLEFLSRL 308 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHHHHH
Confidence 8888888888888877542 466778888888888888888888888887743 33 677788888888888888
Q ss_pred HHHHHHHHHh
Q 038852 373 SEAIETFKKA 382 (851)
Q Consensus 373 ~~A~~~~~~~ 382 (851)
++|++.+.++
T Consensus 309 ~eAi~~~~~~ 318 (474)
T 4abn_A 309 TSLLESKGKT 318 (474)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHhccc
Confidence 8887766544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-13 Score=131.53 Aligned_cols=165 Identities=16% Similarity=0.150 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
..+|..++.+|.+.|++++|++.|+++++..+ -+..+|..++.+|.+.|++++|+..++++....+. +..++..++
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~ 80 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP--NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT--SAEAYYILG 80 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch--hHHHHHHHH
Confidence 34444455555555555555555555444322 23444444444555555555555555554444333 344444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHH
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDK 298 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 298 (851)
..+...+++++|.+.+.++.+.... +..++..++.+|.+.|++++|++.|+++++.+.. +..++..++.+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 4444455555555555444444333 4444444444444444444444444444444332 3333444444444444444
Q ss_pred HHHHHHHHHHH
Q 038852 299 EAMQSYKSLME 309 (851)
Q Consensus 299 ~A~~l~~~~~~ 309 (851)
+|++.|+++++
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44444444433
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-13 Score=131.19 Aligned_cols=167 Identities=14% Similarity=0.190 Sum_probs=137.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
+..+|..|+.+|...|++++|++.|+++++.+|. +..+|..++.+|.+.|++++|++.++++...... +..++..++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN--NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 5678889999999999999999999999998877 7888999999999999999999999998887665 778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKE 333 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~ 333 (851)
..+...++++.|.+.++++.+.... +..++..++.+|.+.|++++|++.|+++++.++ .+..+|..++.+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHH
Confidence 8889999999999999888877655 667777777788888888888888888777754 35567777788888888888
Q ss_pred HHHHHHHHHHHc
Q 038852 334 EAQALFEQMLDN 345 (851)
Q Consensus 334 ~A~~l~~~m~~~ 345 (851)
+|++.|+++++.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 888888877763
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-13 Score=151.42 Aligned_cols=238 Identities=9% Similarity=0.018 Sum_probs=159.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc------cchh
Q 038852 214 YRHLTKGFVDAGRIGEAVDLLRDMLSRQLG-AD----SLVYNNLISGFLNLGNLEKANELFDELKQRCLV------YDGV 282 (851)
Q Consensus 214 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~------~d~~ 282 (851)
|..++..+...|++++|++.|+++++.... .| ..++..++.+|...|++++|+..++++++.... ....
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 444566677788888888888888764211 12 356777888888888888888888877653111 1245
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCCCCcc
Q 038852 283 VNATFMEWWFNQGKDKEAMQSYKSLMERNF-----RMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNH---QPPNIQAV 354 (851)
Q Consensus 283 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-----~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~---~~p~~~~~ 354 (851)
++..++.+|...|++++|++.|+++++... .....+++.|+.+|...|++++|++.|+++++.. ..+.
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~---- 259 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL---- 259 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG----
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh----
Confidence 667777888888888888888887776321 1122467778888888888888888888887611 1111
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-H
Q 038852 355 NSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEM---LEEAEKLLREISTKSLSPD-V 430 (851)
Q Consensus 355 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd-~ 430 (851)
...++..++.+|.+.|++++|+.+|+++.......+.......+..+...|...++ +++|+.++++. +..++ .
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~ 336 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIE 336 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHH
Confidence 35677888888888888888888888876554332222234455666666666777 66777666652 11122 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 431 TTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 431 ~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
..+..++..|...|++++|.++|+++++
T Consensus 337 ~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 337 ACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3556777788888888888888877765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.5e-13 Score=145.98 Aligned_cols=233 Identities=14% Similarity=0.075 Sum_probs=108.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCH----HHHHHHH
Q 038852 111 VQSLIRAGDLDAASYLARQAVFSRIRPTV----FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNI----VSYNNLI 182 (851)
Q Consensus 111 l~~l~~~g~~~~A~~l~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~----~~~~~Li 182 (851)
...+...|++++|..++++++......+. .+++.+...+...|++++|++.|++++....-..+. .+++.+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34445566666666666665554322222 134445555556666666666666654321111121 2344555
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCC---CC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----CHHHHHHH
Q 038852 183 NTYCDEGKVDEGMNVFRRIIETAP---VG--P-SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA----DSLVYNNL 252 (851)
Q Consensus 183 ~~~~~~g~~~~A~~l~~~~~~~~~---~~--p-~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p----d~~~~~~L 252 (851)
.++...|++++|++.|+++++... .. + ...++..++.++...|++++|++++++.++..... ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 556666666666666665554321 10 1 12344455555666666666666666655432211 12345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCccc--hhhHH----HHHHHHHHcCCHHHHHHHHHHHHHhcCCC---CHHHHHHHH
Q 038852 253 ISGFLNLGNLEKANELFDELKQRCLVYD--GVVNA----TFMEWWFNQGKDKEAMQSYKSLMERNFRM---TPATCNTLL 323 (851)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~~~~~~~~~d--~~~~~----~li~~~~~~g~~~~A~~l~~~~~~~~~~~---~~~~~~~Li 323 (851)
+.++...|++++|..+++++.......+ ..... ..+..+...|++++|..+++++....... ....+..++
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 5555566666666666555543211100 00000 12223445555555555555444322110 012233444
Q ss_pred HHHHhCCCHHHHHHHHHHHH
Q 038852 324 EVLLKHEKKEEAQALFEQML 343 (851)
Q Consensus 324 ~~~~~~g~~~~A~~l~~~m~ 343 (851)
.++...|++++|++++++++
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555554443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.57 E-value=9.2e-13 Score=144.76 Aligned_cols=282 Identities=11% Similarity=0.059 Sum_probs=147.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHH
Q 038852 179 NNLINTYCDEGKVDEGMNVFRRIIETAPVGPSS----NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG-ADSLVYNNLI 253 (851)
Q Consensus 179 ~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~----~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~~~~~Li 253 (851)
..+...+...|++++|+.++++++...+.. +. .+++.++.++...|++++|+++++++++.... .+...
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----- 91 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPG-WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY----- 91 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH-----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH-----
Confidence 334444555666666666666665544221 11 13444455555555555555555555442110 01100
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CC--C-CHHHHHHHHHHH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN----FR--M-TPATCNTLLEVL 326 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~----~~--~-~~~~~~~Li~~~ 326 (851)
...++..+..++...|++++|+++|+++++.. .. + ...++..+..++
T Consensus 92 --------------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 145 (373)
T 1hz4_A 92 --------------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL 145 (373)
T ss_dssp --------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH
Confidence 01122333444444444444444444444321 00 1 123455566677
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHH--HHHHHH
Q 038852 327 LKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGY--NNIIAR 404 (851)
Q Consensus 327 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~--~~li~~ 404 (851)
...|++++|+.++++.+......... ....++..++.++...|++++|+.+++++.......+........ ..++..
T Consensus 146 ~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T 1hz4_A 146 WAWARLDEAEASARSGIEVLSSYQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 224 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTSCGG-GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhhccCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 77777777777777776543221100 023466677777777788888877777765432111110001111 123344
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----Cccc-hhHHHHHHHHHH
Q 038852 405 YCENEMLEEAEKLLREISTKSLSP---DVTTFRTLIDAYLKVERIDDALELFNRMVESG----LRVV-VSFGTKVFNELI 476 (851)
Q Consensus 405 ~~~~g~~~~A~~l~~~m~~~g~~p---d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~----~~~~-~~~~~~L~~~~~ 476 (851)
+...|++++|..++++........ ....+..++.++...|++++|+++++++.+.. .... ...+..+..+|.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 667788888888887776532211 12345667777778888888888887776531 1111 124444566677
Q ss_pred HcCCHHHHHHHHHHHhh
Q 038852 477 TKGKVAECAPILTKMGE 493 (851)
Q Consensus 477 ~~g~~~~A~~ll~~m~~ 493 (851)
..|++++|...|++.++
T Consensus 305 ~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 77777777777777654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-13 Score=156.65 Aligned_cols=217 Identities=9% Similarity=-0.000 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHH
Q 038852 226 RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNL-EKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSY 304 (851)
Q Consensus 226 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~-~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~ 304 (851)
++++++..+++..+.... +...+..++.+|...|++ ++|+++|+++++.+.. +..++..++.+|.+.|++++|++.|
T Consensus 83 ~~~~al~~l~~~~~~~~~-~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQV-EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCch-hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 366777777777665443 778888888999999999 9999999988887665 6778888888888888888888888
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHc------
Q 038852 305 KSLMERNFRMTPATCNTLLEVLLKH---------EKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH------ 369 (851)
Q Consensus 305 ~~~~~~~~~~~~~~~~~Li~~~~~~---------g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~------ 369 (851)
+++++.+.. ..++..++.+|... |++++|+++|+++++.. |+ +..+|..++.+|...
T Consensus 161 ~~al~~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~----~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 161 SGALTHCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VL----DGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHTTCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHHHHhhcc
Confidence 888887643 57888888888888 88899999999888853 33 677888888888887
Q ss_pred --CChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 038852 370 --GKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERID 447 (851)
Q Consensus 370 --g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~ 447 (851)
|++++|++.|+++....+. ..-+...|..++.+|...|++++|++.|+++++... -+...+..+..++...|+++
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRK--ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGG--GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCC--cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHH
Confidence 7778888777777654330 001666677777777777777777777777665422 24556666666666666666
Q ss_pred HHHHHHHH
Q 038852 448 DALELFNR 455 (851)
Q Consensus 448 ~A~~~~~~ 455 (851)
+|++.+.+
T Consensus 310 eAi~~~~~ 317 (474)
T 4abn_A 310 SLLESKGK 317 (474)
T ss_dssp HHHHHTTT
T ss_pred HHHHHhcc
Confidence 66655443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=153.04 Aligned_cols=170 Identities=20% Similarity=0.186 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcC------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCC
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQA------DIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIET------APV 207 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~------~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~------~~~ 207 (851)
.++..++..+...|++++|+.+|+++++.. .......++..++.+|...|++++|+++|+++++. ...
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 445555555555566666666555554410 01112344555666666666666666666665543 111
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----
Q 038852 208 GPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ------L-GADSLVYNNLISGFLNLGNLEKANELFDELKQR----- 275 (851)
Q Consensus 208 ~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g------~-~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~----- 275 (851)
.....++..++.+|...|++++|+++|+++++.. . .....++..++.+|...|++++|+++|+++++.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 1123455566666666666666666666665431 1 112345556666666666666666666666543
Q ss_pred -C-CccchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 276 -C-LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLME 309 (851)
Q Consensus 276 -~-~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 309 (851)
+ ......++..++.+|...|++++|+++|+++++
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 111234555566666666666666666666554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-13 Score=148.61 Aligned_cols=242 Identities=7% Similarity=-0.052 Sum_probs=168.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCC-c-cCHH
Q 038852 319 CNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPF-A-MDVA 396 (851)
Q Consensus 319 ~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~-~d~~ 396 (851)
+...+..+...|++++|+..|+++++....-........++..++.+|...|++++|+..++++......... . ....
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 3445666778888999999888887642111101113567888888999999999999888887654322211 1 1356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCccchh
Q 038852 397 GYNNIIARYCENEMLEEAEKLLREISTKS--LS--P-DVTTFRTLIDAYLKVERIDDALELFNRMVE-----SGLRVVVS 466 (851)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~--p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 466 (851)
+++.++.+|...|++++|++.|+++++.. .. . ...++..|+.+|...|++++|+++|+++++ ..... ..
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HH
Confidence 77888899999999999999988876531 11 1 134678889999999999999999999887 44333 55
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCC----CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHH
Q 038852 467 FGTKVFNELITKGKVAECAPILTKMGEKDP----KPDFLIYDVVVRGLCNEGL---FDMSKDIVDQMMKYGVGITPALQD 539 (851)
Q Consensus 467 ~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~----~pd~~~~~~ll~a~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~ 539 (851)
.+..++.+|.+.|++++|+.++++.++... ......+..+...+...++ +++|+.++++.. ........+.
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~ 340 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHH
Confidence 566688899999999999999998876421 1123345555556666777 777777776521 1112234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhh
Q 038852 540 FVRETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 540 ~L~~~~~~~G~~~eA~~ll~~~~~ 563 (851)
.++.+|.+.|++++|.++|++...
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 689999999999999999988754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-14 Score=151.61 Aligned_cols=171 Identities=22% Similarity=0.246 Sum_probs=140.3
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc------CCC
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFS-------RIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQ------ADI 171 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~------~~~ 171 (851)
..+..+...+...|++++|+.++++++.. .......++..++.+|...|++++|+++|+++++. ...
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45778899999999999999999998874 23335678889999999999999999999998764 222
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Q 038852 172 VPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETA-----PV-GPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR----- 240 (851)
Q Consensus 172 ~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~-----~~-~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~----- 240 (851)
.....++..++.+|...|++++|+++|+++++.. +. .....++..++.+|...|++++|+++|+++++.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 2246688999999999999999999999998762 12 124567889999999999999999999999875
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 241 -QLGA-DSLVYNNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 241 -g~~p-d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
+..+ ...++..++.+|...|++++|+++|+++++.
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2121 3467889999999999999999999998864
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.7e-15 Score=170.72 Aligned_cols=119 Identities=15% Similarity=0.111 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHH--cCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFD--QADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRH 216 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~--~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~ 216 (851)
..+||+||++|++.|++++|.++|++|.+ ..|+.||++|||+||.+|++.|++++|+++|++|.+. ++.||..||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHH
Confidence 45677777777777777777777776643 2356777777777777777777777777777777554 37777777777
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038852 217 LTKGFVDAGR-IGEAVDLLRDMLSRQLGADSLVYNNLISGFLN 258 (851)
Q Consensus 217 Li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~ 258 (851)
||.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 7777777776 46677777777777777777777777654433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.5e-15 Score=171.20 Aligned_cols=119 Identities=13% Similarity=0.246 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 356 SDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRT 435 (851)
Q Consensus 356 ~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~ 435 (851)
..+|+.|+++||+.|++++|.++|++|... ...++.||+++||+||.+||+.|++++|+++|++|.+.|+.||.+||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m-~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ-RQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHS-HHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 457777777777777777777777777543 2235566777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHHcCCccchhHHHHHHHHH
Q 038852 436 LIDAYLKVER-IDDALELFNRMVESGLRVVVSFGTKVFNEL 475 (851)
Q Consensus 436 Ll~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~ 475 (851)
||.+|++.|+ .++|.++|++|.+.|+.|+..+|+.++..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 7777777776 366777777777777777777777665433
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.45 E-value=8.5e-12 Score=121.08 Aligned_cols=165 Identities=22% Similarity=0.220 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTK 219 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~ 219 (851)
..|..++..+...|++++|+++|+++++.. ..+..++..++.+|...|++++|+++|+++++..+. +..+|..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~ 84 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD--NVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Confidence 345566666677777777777777665432 235666777777777777777777777777766544 5666777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHH
Q 038852 220 GFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKE 299 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~ 299 (851)
++...|++++|+++|+++++.... +..++..++.+|...|++++|+++|+++++.... +..++..++.+|...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHH
Confidence 777777777777777777766443 5666667777777777777777777776665433 44555556666666666666
Q ss_pred HHHHHHHHHHh
Q 038852 300 AMQSYKSLMER 310 (851)
Q Consensus 300 A~~l~~~~~~~ 310 (851)
|+++|+++++.
T Consensus 163 A~~~~~~~~~~ 173 (186)
T 3as5_A 163 ALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 66666655544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-12 Score=151.46 Aligned_cols=165 Identities=13% Similarity=0.105 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
..+|+.|..+|.+.|++++|++.|+++++... -+..+|+.|+.+|.+.|++++|++.|+++++.++. +..+|+.|+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P--~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~--~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT--FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence 45566666666666666666666666655432 23556666666666666666666666666666554 555666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHH
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDK 298 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 298 (851)
.+|...|++++|++.|+++++.... +..+|..++.+|.+.|++++|++.|+++++.+.. +...+..++.+|...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 6666666666666666666665444 5566666666666666666666666666665544 4556666666666666666
Q ss_pred HHHHHHHHHHH
Q 038852 299 EAMQSYKSLME 309 (851)
Q Consensus 299 ~A~~l~~~~~~ 309 (851)
+|++.|+++++
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-12 Score=136.52 Aligned_cols=135 Identities=19% Similarity=0.172 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----C-
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETA-----PV-GPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ-----L- 242 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~-----~~-~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g-----~- 242 (851)
..++..++.+|...|++++|+.+|+++++.. +. .....+|..++.+|...|++++|+++|+++++.. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 3445555555555555555555555555431 11 1123455555666666666666666666555431 0
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------C-CccchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 243 -GADSLVYNNLISGFLNLGNLEKANELFDELKQR------C-LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLME 309 (851)
Q Consensus 243 -~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~------~-~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 309 (851)
.....++..++.+|...|++++|+++|+++++. . ......++..++.+|...|++++|+++|+++++
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112345556666666666666666666665543 0 111234555555666666666666666665554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.7e-12 Score=150.14 Aligned_cols=166 Identities=16% Similarity=0.213 Sum_probs=149.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
+..+|+.|+.+|.+.|++++|++.|+++++.++. +..+|+.|+.+|.+.|++++|++.|+++++.... +..+|..|+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~--~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE--FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 4678999999999999999999999999999877 8889999999999999999999999999998766 789999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKE 333 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~ 333 (851)
.+|.+.|++++|++.|+++++.+.. +...+..++.+|.+.|++++|++.|+++++.+.. +...|..|+.+|...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999988766 7788899999999999999999999999988753 5677888999999999999
Q ss_pred HHHHHHHHHHH
Q 038852 334 EAQALFEQMLD 344 (851)
Q Consensus 334 ~A~~l~~~m~~ 344 (851)
+|++.|+++++
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888888765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-12 Score=134.97 Aligned_cols=158 Identities=21% Similarity=0.214 Sum_probs=123.3
Q ss_pred CCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC------CCCCCHHHHHHHHHH
Q 038852 118 GDLDAASYLARQAVF-------SRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQA------DIVPNIVSYNNLINT 184 (851)
Q Consensus 118 g~~~~A~~l~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~------~~~pd~~~~~~Li~~ 184 (851)
|++++|+.++++++. ........++..++.+|...|++++|+.+|+++++.. .......+|..++.+
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 455555555555443 2222346788999999999999999999999987652 112235688999999
Q ss_pred HHHcCChHHHHHHHHHHHHhC-----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCC-CHHHHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETA-----PV-GPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR------QLGA-DSLVYNN 251 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~-----~~-~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~------g~~p-d~~~~~~ 251 (851)
|...|++++|+++|+++++.. +. .....+|..++.+|...|++++|+++|+++++. ...+ ...++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 999999999999999998761 11 124678899999999999999999999999876 1111 3568889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 252 LISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 252 Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
++.+|...|++++|+++|+++++.
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999998864
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-11 Score=118.70 Aligned_cols=165 Identities=15% Similarity=0.163 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLIS 254 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~ 254 (851)
...|..++..+...|++++|+++|+++++..+. +..++..++.++...|++++|+++|+++++.... +..++..++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF--DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 345666777777778888888888777665543 6677777777777888888888888877776444 6677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHH
Q 038852 255 GFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEE 334 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~ 334 (851)
+|...|++++|+++|+++.+.... +..++..++.+|...|++++|+++|+++++... .+..++..++.++...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHH
Confidence 777777777777777777765443 455555666666666666666666666665542 234555556666666666666
Q ss_pred HHHHHHHHHH
Q 038852 335 AQALFEQMLD 344 (851)
Q Consensus 335 A~~l~~~m~~ 344 (851)
|+++|+++++
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.9e-11 Score=127.12 Aligned_cols=224 Identities=14% Similarity=0.104 Sum_probs=128.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CCC-CHHHHHHHHHHHHHcCCHHH
Q 038852 154 RYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAP---VGP-SSNTYRHLTKGFVDAGRIGE 229 (851)
Q Consensus 154 ~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~---~~p-~~~~~~~Li~~~~~~g~~~~ 229 (851)
++++|+..|+++ +.+|...|++++|++.|+++++... ... ...+|+.++.+|...|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 366776666654 2345666777777777776665421 000 13456666666666666666
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 038852 230 AVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQ-GKDKEAMQSYKSLM 308 (851)
Q Consensus 230 A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~-g~~~~A~~l~~~~~ 308 (851)
|+..|+++++.. ...|+...+ ..++..++.+|... |++++|++.|++++
T Consensus 96 A~~~~~~Al~l~---------------~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 96 AVDSLENAIQIF---------------THRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHHHHHHHHH---------------HHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------------HHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 666666655421 111111111 22344555556664 66666666666665
Q ss_pred HhcCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 309 ERNFRMT-----PATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQA-VNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 309 ~~~~~~~-----~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
+.....+ ..+++.++.+|...|++++|+.+|+++++......... ....+|..++.++...|++++|+..|+++
T Consensus 146 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5422111 24677888899999999999999999988543321100 01236788888899999999999999998
Q ss_pred ccCCCCCCCccCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 038852 383 GTHPKSKPFAMDVAGYNNIIARYC--ENEMLEEAEKLLREIST 423 (851)
Q Consensus 383 ~~~~~~~~~~~d~~~~~~li~~~~--~~g~~~~A~~l~~~m~~ 423 (851)
....+..........+..++.+|. ..+++++|++.|+++..
T Consensus 226 l~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 226 QSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 776544221112223444555554 34567777777766543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.7e-11 Score=121.87 Aligned_cols=197 Identities=14% Similarity=0.086 Sum_probs=135.4
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 137 PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRH 216 (851)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~ 216 (851)
.|...+..++..+...|++++|++.|+++++... ..+...+..++.+|...|++++|++.|+++++.++. +..+|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN--LANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS--HHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc--hHHHHHH
Confidence 3567778888888888888888888888877542 146666777888888888888888888888887655 6778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc-chhhHHHHH
Q 038852 217 LTKGFVDAGRIGEAVDLLRDMLSRQLGADS-------LVYNNLISGFLNLGNLEKANELFDELKQRCLVY-DGVVNATFM 288 (851)
Q Consensus 217 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~-d~~~~~~li 288 (851)
++.+|...|++++|++.|+++++.... +. .+|..++.++...|++++|++.|+++++.+... +...+..++
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 888888888888888888888887554 55 457777788888888888888888887764320 245566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038852 289 EWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 289 ~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 345 (851)
.+|...|+ .+++++..... .+...|..+. ....+.+++|+..|+++++.
T Consensus 161 ~~~~~~~~-----~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHH-----HHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 66654433 23333333321 1222332222 23345567777777777764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-11 Score=128.19 Aligned_cols=210 Identities=11% Similarity=0.018 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC---CCCC-CHHHHHHHHHHHHHcCChHHH
Q 038852 119 DLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQA---DIVP-NIVSYNNLINTYCDEGKVDEG 194 (851)
Q Consensus 119 ~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~---~~~p-d~~~~~~Li~~~~~~g~~~~A 194 (851)
++++|...|+++ +..|...|++++|++.|+++++.. +... ...+|+.++.+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 446778999999999999887642 2111 156899999999999999999
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC-C----HHHHHHHHHHHHhcCCHHH
Q 038852 195 MNVFRRIIETAPVGPS----SNTYRHLTKGFVDA-GRIGEAVDLLRDMLSRQLGA-D----SLVYNNLISGFLNLGNLEK 264 (851)
Q Consensus 195 ~~l~~~~~~~~~~~p~----~~~~~~Li~~~~~~-g~~~~A~~l~~~m~~~g~~p-d----~~~~~~Li~~~~~~g~~~~ 264 (851)
+..|+++++..+..-+ ..+|+.++.+|... |++++|++.|+++++..... + ..++..++.+|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999876422112 34778888888885 88888888888887653211 1 3467778888888888888
Q ss_pred HHHHHHHHHhcCCccch------hhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHH--hCCCH
Q 038852 265 ANELFDELKQRCLVYDG------VVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMT----PATCNTLLEVLL--KHEKK 332 (851)
Q Consensus 265 A~~~~~~~~~~~~~~d~------~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~----~~~~~~Li~~~~--~~g~~ 332 (851)
|+++|+++++....... ..+..++.++...|++++|+..|+++++...... ...+..++.+|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888776543221 1456666677777777777777777665433211 112333444443 33456
Q ss_pred HHHHHHHHHHH
Q 038852 333 EEAQALFEQML 343 (851)
Q Consensus 333 ~~A~~l~~~m~ 343 (851)
++|++.|++++
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 66666665554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-09 Score=124.36 Aligned_cols=125 Identities=14% Similarity=-0.008 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHH-HcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038852 431 TTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELI-TKGKVAECAPILTKMGEKDPKPDFLIYDVVVRG 509 (851)
Q Consensus 431 ~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~-~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a 509 (851)
.+|...+..+.+.++++.|..+|+++ ... ......+...+..-. ..++.+.|..+|+..++.... +...+..+++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 34555555555566666666666666 211 112222211111111 123566667777666654221 33444555555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038852 510 LCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 510 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~ 563 (851)
....|+.+.|..+|+++. ....++...++.-...|+.+.+.+++++...
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566666677776666652 2355666666666666777766666666654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-11 Score=124.24 Aligned_cols=172 Identities=13% Similarity=0.122 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-SNTYRH 216 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-~~~~~~ 216 (851)
...+..++..+.+.|++++|++.|+++++..+..+. ..++..++.+|...|++++|+..|+++++..|..++ ..++..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 344444555555555555555555555443321111 344555555555555555555555555555443222 334455
Q ss_pred HHHHHHH--------cCCHHHHHHHHHHHHhcCCCCCHHH-----------------HHHHHHHHHhcCCHHHHHHHHHH
Q 038852 217 LTKGFVD--------AGRIGEAVDLLRDMLSRQLGADSLV-----------------YNNLISGFLNLGNLEKANELFDE 271 (851)
Q Consensus 217 Li~~~~~--------~g~~~~A~~l~~~m~~~g~~pd~~~-----------------~~~Li~~~~~~g~~~~A~~~~~~ 271 (851)
++.++.. .|++++|+..|+++++.... +... +..++.+|.+.|++++|+..|++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555 55555555555555554322 1111 23444555555555555555555
Q ss_pred HHhcCCcc--chhhHHHHHHHHHHc----------CCHHHHHHHHHHHHHhc
Q 038852 272 LKQRCLVY--DGVVNATFMEWWFNQ----------GKDKEAMQSYKSLMERN 311 (851)
Q Consensus 272 ~~~~~~~~--d~~~~~~li~~~~~~----------g~~~~A~~l~~~~~~~~ 311 (851)
+++..... ....+..++.+|... |++++|++.|+++++..
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 55443221 123344444444433 44455555555544443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=8e-11 Score=119.42 Aligned_cols=205 Identities=14% Similarity=0.046 Sum_probs=161.7
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
..+......+...|++++|+..|++++......+...+..++.++...|++++|++.|+++++..+ .+..+|..++.+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY--NLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc--chHHHHHHHHHH
Confidence 467888999999999999999999999887547778888899999999999999999999987543 356789999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSS-------NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGAD---SLVYNNLIS 254 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~-------~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~~~~Li~ 254 (851)
|...|++++|++.|+++++..+. +. .+|..++.++...|++++|++.|+++++.. |+ ..+|..++.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPG--NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHHH
Confidence 99999999999999999998876 55 568899999999999999999999999863 33 467888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 038852 255 GFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLE 324 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~ 324 (851)
+|...| ..+++++...... +...+..+ .....+.+++|+..|+++++.++. +..+...+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~ 222 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLASS-NKEKYASE--KAKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQ 222 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTTT-CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcccC-CHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 886554 4445555554332 23333322 344567799999999999998753 3444444433
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.33 E-value=9.7e-10 Score=116.04 Aligned_cols=224 Identities=10% Similarity=0.054 Sum_probs=134.9
Q ss_pred HcCCh-hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HH
Q 038852 151 RAKRY-DDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG--KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGF----VD 223 (851)
Q Consensus 151 ~~g~~-~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g--~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~----~~ 223 (851)
+.|.+ ++|++++++++..++ -+..+|+....++...| ++++++++++.++..++. +..+|+....++ ..
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP--~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk--~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 44 KAEEYSERALHITELGINELA--SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK--NYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCc--HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc--cHHHHHHHHHHHHHHHHh
Confidence 33433 567777777766432 24556666666666666 777777777777776655 445565555555 44
Q ss_pred c---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHH
Q 038852 224 A---GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLE--KANELFDELKQRCLVYDGVVNATFMEWWFNQGKDK 298 (851)
Q Consensus 224 ~---g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~--~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 298 (851)
. +++++++++++++++...+ +..+|+....++.+.|.++ +++++++++++.++.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-------------------- 178 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-------------------- 178 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT--------------------
T ss_pred ccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC--------------------
Confidence 4 5666666666666666555 6666666666666666555 555555555554443
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCCh
Q 038852 299 EAMQSYKSLMERNFRMTPATCNTLLEVLLKHEK------KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKF 372 (851)
Q Consensus 299 ~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~------~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~ 372 (851)
|...|+....++...++ ++++++.+++++..... |..+|+.+..++.+.|+.
T Consensus 179 ----------------N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~------n~SaW~y~~~ll~~~~~~ 236 (306)
T 3dra_A 179 ----------------NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ------NPSTWNYLLGIHERFDRS 236 (306)
T ss_dssp ----------------CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS------CHHHHHHHHHHHHHTTCC
T ss_pred ----------------CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC------CccHHHHHHHHHHhcCCC
Confidence 33455545555545444 67777777777775433 777787777777777774
Q ss_pred HH-HHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 373 SE-AIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREIST 423 (851)
Q Consensus 373 ~~-A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 423 (851)
.+ +.++++++..... .-..+...+..++++|.+.|+.++|+++++.+.+
T Consensus 237 ~~~~~~~~~~~~~~~~--~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 237 ITQLEEFSLQFVDLEK--DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GGGGHHHHHTTEEGGG--TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 44 4445555543210 0111555666666666666677777777766654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.30 E-value=7e-10 Score=117.13 Aligned_cols=184 Identities=5% Similarity=0.022 Sum_probs=144.1
Q ss_pred cHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDL-DAASYLARQAVFSRIRPTVFTCNAIIAAMYRAK--RYDDAVALFKYFFDQADIVPNIVSYNNLI 182 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~-~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~~~~~~~~~pd~~~~~~Li 182 (851)
.+...++++.+.|.+ ++|+.++++++... .-+..+||.-..++...| ++++++++++.++.... .+..+|+...
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP--k~y~aW~~R~ 110 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE--KNYQIWNYRQ 110 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT--TCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc--ccHHHHHHHH
Confidence 456677777788877 58999999999776 346778999998888888 99999999999998654 3556777776
Q ss_pred HHH----HHc---CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 183 NTY----CDE---GKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIG--EAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 183 ~~~----~~~---g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~--~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
.++ ... +++++++++++++++.++. |..+|+....++.+.|+++ +++++++++++.++. |..+|+...
T Consensus 111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk--ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~ 187 (306)
T 3dra_A 111 LIIGQIMELNNNDFDPYREFDILEAMLSSDPK--NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRF 187 (306)
T ss_dssp HHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 666 666 7899999999999999877 9999999999999999988 999999999999887 899999888
Q ss_pred HHHHhcCC------HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCC
Q 038852 254 SGFLNLGN------LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGK 296 (851)
Q Consensus 254 ~~~~~~g~------~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~ 296 (851)
.++...+. ++++++.+++++..++. |...|+.+..++.+.|+
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTC
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCC
Confidence 88877765 55666666665555544 44444444444444443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.8e-11 Score=123.32 Aligned_cols=172 Identities=11% Similarity=0.094 Sum_probs=125.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCHHHH
Q 038852 173 PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG--ADSLVY 249 (851)
Q Consensus 173 pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~~~ 249 (851)
.+...+..++..+.+.|++++|+..|+++++..+..+. ..++..++.+|...|++++|++.|+++++.... ....++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 35677888899999999999999999999998766322 678999999999999999999999999997542 124678
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHhcCCccchhhH-----------------HHHHHHHHHcCCHHHHHHHH
Q 038852 250 NNLISGFLN--------LGNLEKANELFDELKQRCLVYDGVVN-----------------ATFMEWWFNQGKDKEAMQSY 304 (851)
Q Consensus 250 ~~Li~~~~~--------~g~~~~A~~~~~~~~~~~~~~d~~~~-----------------~~li~~~~~~g~~~~A~~l~ 304 (851)
..++.++.. .|++++|+..|+++++.... +.... ..++.+|.+.|++++|+..|
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 889999999 99999999999999987654 22222 34455566666666666666
Q ss_pred HHHHHhcCCC--CHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHc
Q 038852 305 KSLMERNFRM--TPATCNTLLEVLLKH----------EKKEEAQALFEQMLDN 345 (851)
Q Consensus 305 ~~~~~~~~~~--~~~~~~~Li~~~~~~----------g~~~~A~~l~~~m~~~ 345 (851)
+++++..+.. ....+..++.+|... |++++|+.+|+++++.
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 6666554322 223455555555544 5666666666666653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.1e-11 Score=126.07 Aligned_cols=138 Identities=8% Similarity=-0.019 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc-----cchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----CHH
Q 038852 248 VYNNLISGFLNLGNLEKANELFDELKQRCLV-----YDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRM-----TPA 317 (851)
Q Consensus 248 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~-----~~~ 317 (851)
+|+.++.+|.+.|++++|+..|+++++.... ....++..+..+|.. |++++|++.|+++++..... ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 3444444444455555555555444332100 012344445555555 66666666665555432111 124
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCC
Q 038852 318 TCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPK 387 (851)
Q Consensus 318 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~ 387 (851)
+++.++.+|...|++++|+.+|++++.....-........++..++.++...|++++|+..|+++. ..+
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 667778888888888888888888776311100000012356667777777788888888888876 443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.27 E-value=2.7e-08 Score=113.08 Aligned_cols=371 Identities=11% Similarity=0.056 Sum_probs=207.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHH----
Q 038852 113 SLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKR-YDDAVALFKYFFDQADIVP-NIVSYNNLINTYC---- 186 (851)
Q Consensus 113 ~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~~~~~~~~~p-d~~~~~~Li~~~~---- 186 (851)
...-.++++.+..+|++++.. .|++..|...+....+.++ .+....+|+.++..-|..+ +...|...+..+.
T Consensus 23 ~~~P~~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~ 100 (493)
T 2uy1_A 23 RLYMSKDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIED 100 (493)
T ss_dssp HHHHTTCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSS
T ss_pred HHCCCCCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchh
Confidence 333446666666666666642 3466666666665555542 3445556666655444322 4455555555432
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038852 187 DEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKAN 266 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~ 266 (851)
..++++.+.++|++++.. |..--...|......- ...+...+.+++.+. .+.+..|+
T Consensus 101 ~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~---------------------~~~y~~ar 157 (493)
T 2uy1_A 101 EQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFE-LELNKITGKKIVGDT---------------------LPIFQSSF 157 (493)
T ss_dssp HHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHH---------------------HHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHH-HHhccccHHHHHHHH---------------------hHHHHHHH
Confidence 234556666666666652 2211111222221111 111111122221111 12334444
Q ss_pred HHHHHHHhcCCccchhhHHHHHHHHHHc--CC-----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 038852 267 ELFDELKQRCLVYDGVVNATFMEWWFNQ--GK-----DKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALF 339 (851)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~li~~~~~~--g~-----~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~ 339 (851)
.+|+++...-...+...|..++..-... |- .+.+..+|++++.... .+...|...+..+...|+.++|.++|
T Consensus 158 ~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~ 236 (493)
T 2uy1_A 158 QRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVV 236 (493)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444443211001233455544443221 11 3456778888887643 45678888888888999999999999
Q ss_pred HHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCC-----CCCccCHHHHHHHHHHHHhcCCHHHH
Q 038852 340 EQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKS-----KPFAMDVAGYNNIIARYCENEMLEEA 414 (851)
Q Consensus 340 ~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~d~~~~~~li~~~~~~g~~~~A 414 (851)
++++.. |. +...+.. |....+.++..+.+......... .........|...+..+.+.++++.|
T Consensus 237 erAi~~---P~----~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~A 305 (493)
T 2uy1_A 237 ERGIEM---SD----GMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305 (493)
T ss_dssp HHHHHH---CC----SSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHhC---CC----cHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence 999986 43 3333332 22222222221111111100000 00011235677788888788899999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 038852 415 EKLLREISTKSLSPDVTTFRTLIDAYLKVE-RIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGE 493 (851)
Q Consensus 415 ~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~ 493 (851)
..+|+++ ... ..+..+|...+..-...+ +.+.|..+|+.+++.... ...++...++.....|+.+.|..+|+++.+
T Consensus 306 R~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~k 382 (493)
T 2uy1_A 306 RKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLEK 382 (493)
T ss_dssp HHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSCC
T ss_pred HHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999 321 234555654443333334 699999999999986533 233444467777889999999999999842
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038852 494 KDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 494 ~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~ 528 (851)
....|...+..-...|+.+.+.++++++.+
T Consensus 383 -----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 383 -----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567888888877888999999999998874
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-10 Score=115.01 Aligned_cols=115 Identities=14% Similarity=0.117 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNN----------------LINTYCDEGKVDEGMNVFRRIIE 203 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~----------------Li~~~~~~g~~~~A~~l~~~~~~ 203 (851)
..+...+..+...|++++|+..|+++++..+ .+...|.. ++.+|.+.|++++|+..|+++++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNI--DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH--HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444455556667777777777777665422 12334444 55555555555555555555555
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 204 TAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 204 ~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
.+|. +..+|..++.+|...|++++|++.|+++++.... +..+|..++.+|...
T Consensus 83 ~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 83 KAPN--NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLT 135 (208)
T ss_dssp HCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 5444 4445555555555555555555555555554433 444555555554433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.6e-10 Score=112.28 Aligned_cols=164 Identities=15% Similarity=0.119 Sum_probs=104.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH----------------HHHHHHHcCChhHHHHHHHHHHHcCC
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNA----------------IIAAMYRAKRYDDAVALFKYFFDQAD 170 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~l~~~~~~~~~ 170 (851)
+......++..|++++|+..|++++.... .+...|.. +..+|.+.|++++|+..|+++++..+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 45566677777777777777777775542 23445555 77777777777777777777776543
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCCHHH
Q 038852 171 IVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGR--IGEAVDLLRDMLSRQLGADSLV 248 (851)
Q Consensus 171 ~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~~ 248 (851)
.+...|..++.+|...|++++|+..|+++++.+|. +..+|..++.+|...|+ .+.+...|+.+.. ..+....
T Consensus 86 --~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 86 --NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD--NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp --TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 35667777777777777777777777777777666 66677777777665543 3444555555432 1222234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038852 249 YNNLISGFLNLGNLEKANELFDELKQRCL 277 (851)
Q Consensus 249 ~~~Li~~~~~~g~~~~A~~~~~~~~~~~~ 277 (851)
+..++.++...|++++|+..|+++++..+
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 44455566666777777777777666543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.5e-10 Score=121.79 Aligned_cols=229 Identities=13% Similarity=0.098 Sum_probs=155.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 038852 117 AGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYR-AKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGM 195 (851)
Q Consensus 117 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~ 195 (851)
.|++++|..+++++.+.... . +.+ .+++++|..+|+++ +.+|...|++++|+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence 56788888888877654321 1 111 47788887777654 34577788888888
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-C----HHHHHHHHHHHHhcCCHHHHH
Q 038852 196 NVFRRIIETAPVGPS----SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA-D----SLVYNNLISGFLNLGNLEKAN 266 (851)
Q Consensus 196 ~l~~~~~~~~~~~p~----~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p-d----~~~~~~Li~~~~~~g~~~~A~ 266 (851)
+.|.++++.....-+ ..+|+.++.+|...|++++|++.|+++++..... + ..++..++.+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 888887765321112 3478888888888999999999988877642110 1 3577788888888 9999999
Q ss_pred HHHHHHHhcCCcc-----chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhCCCHHHHH
Q 038852 267 ELFDELKQRCLVY-----DGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMT-----PATCNTLLEVLLKHEKKEEAQ 336 (851)
Q Consensus 267 ~~~~~~~~~~~~~-----d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~-----~~~~~~Li~~~~~~g~~~~A~ 336 (851)
+.|+++++..... ...++..++.+|.+.|++++|+++|+++++.....+ ..++..++.++...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999887643221 246778888999999999999999999887532211 236677788888889999999
Q ss_pred HHHHHHHHcCCCCCCCcc-CHHHHHHHHHHHHHcCChHHHHH
Q 038852 337 ALFEQMLDNHQPPNIQAV-NSDTFNIMVNECFKHGKFSEAIE 377 (851)
Q Consensus 337 ~l~~~m~~~~~~p~~~~~-~~~~~~~L~~~~~~~g~~~~A~~ 377 (851)
..|++++ . .|+.... .......++.+| ..|+.+.+.+
T Consensus 216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999998 4 3322110 112334444444 5666555444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-09 Score=110.50 Aligned_cols=189 Identities=10% Similarity=0.091 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSS-NTYRHLT 218 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~-~~~~~Li 218 (851)
.+..++..+.+.|++++|+..|+++++..+..+. ...+..++.+|.+.|++++|+..|+++++..|..+.. .++..++
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 3344444555555555555555555544322221 2345555555555555555555555555555443332 2333344
Q ss_pred HHHH------------------HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc
Q 038852 219 KGFV------------------DAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYD 280 (851)
Q Consensus 219 ~~~~------------------~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d 280 (851)
.++. ..|++++|+..|+++++..+. +..++..+..... +...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~----------~~~~~-------- 146 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVF----------LKDRL-------- 146 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHH----------HHHHH--------
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHH----------HHHHH--------
Confidence 4443 356777777777777766433 2222221111000 00000
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 038852 281 GVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMT--PATCNTLLEVLLKHEKKEEAQALFEQMLDNHQP 348 (851)
Q Consensus 281 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~--~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~ 348 (851)
......++..|.+.|++++|+..|+++++..+... ...+..++.+|.+.|++++|++.++.+...+..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123566778889999999999999988765432 256778899999999999999999988876443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.20 E-value=2e-10 Score=136.63 Aligned_cols=185 Identities=11% Similarity=0.012 Sum_probs=147.8
Q ss_pred HHcCChHHHHHHHHHHH--------HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038852 186 CDEGKVDEGMNVFRRII--------ETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFL 257 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~--------~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~ 257 (851)
...|++++|++.|++++ +.++. +...|..++.+|...|++++|++.|+++++.+.. +...|..++.+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE--SVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT--CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc--chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHH
Confidence 66789999999999988 55544 6678888899999999999999999999988666 7888889999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 038852 258 NLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQA 337 (851)
Q Consensus 258 ~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~ 337 (851)
..|++++|++.|+++++.+.. +...+..++.+|.+.|++++ ++.|+++++.+.. +...|..++.+|.+.|++++|++
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999888766 67788888889999999999 9999999888753 55678889999999999999999
Q ss_pred HHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCC--------hHHHHHHHHHh
Q 038852 338 LFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGK--------FSEAIETFKKA 382 (851)
Q Consensus 338 l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~--------~~~A~~~~~~~ 382 (851)
.|+++++. .|+ +..++..++.++...++ +++|.+.+..+
T Consensus 556 ~~~~al~l--~P~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 556 TLDEVPPT--SRH----FTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHTSCTT--STT----HHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHhhccc--Ccc----cHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 99988764 343 57788888888766554 45555555444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-09 Score=99.76 Aligned_cols=129 Identities=19% Similarity=0.398 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKG 220 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~ 220 (851)
.|..++..+...|++++|+++|+++++... .+..+|..++.++...|++++|+.+|+++++..+. +..+|..++.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC--cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC--chHHHHHHHHH
Confidence 344455555555555555555555544321 23444555555555555555555555555554433 44455555555
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 221 FVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 221 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
+...|++++|+++|+++++.... +..++..++.+|.+.|++++|.++|+++++
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555555555544322 344444555555555555555555554443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-10 Score=137.34 Aligned_cols=174 Identities=9% Similarity=-0.038 Sum_probs=137.2
Q ss_pred HHcCChhHHHHHHHHHH--------HcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038852 150 YRAKRYDDAVALFKYFF--------DQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGF 221 (851)
Q Consensus 150 ~~~g~~~~A~~l~~~~~--------~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~ 221 (851)
...|++++|++.|++++ +.. ..+...|..++.+|...|++++|++.|+++++.++. +..+|..++.+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW--RWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC--CHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc--hHHHHHHHHHHH
Confidence 56788888888888887 322 235667888888888889999999999888888766 778888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHH
Q 038852 222 VDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAM 301 (851)
Q Consensus 222 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~ 301 (851)
...|++++|++.|+++++.... +...|..++.+|.+.|++++ ++.|+++++.+.. +...+..++.+|.+.|++++|+
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHH
Confidence 8889999999999988887665 67788888888888899888 8888888887765 6778888888888999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Q 038852 302 QSYKSLMERNFRMTPATCNTLLEVLLKHEK 331 (851)
Q Consensus 302 ~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~ 331 (851)
+.|+++++.+.. +...|..++.++...++
T Consensus 555 ~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 998888876542 34566677777766554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-09 Score=99.22 Aligned_cols=131 Identities=20% Similarity=0.369 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
.|..++..|...|++++|+++|+++++..+. +..+|..++.++...|++++|+++|+++++.+.. +..++..++.++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc--chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHH
Confidence 4566677777777777777777777766544 5666777777777777777777777777766443 566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 038852 257 LNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN 311 (851)
Q Consensus 257 ~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~ 311 (851)
...|++++|+++|+++.+.... +..++..++.++.+.|++++|+++|+++++.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 7777777777777777665443 45566667777777777777777777776654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-09 Score=109.28 Aligned_cols=194 Identities=10% Similarity=0.024 Sum_probs=141.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH--HHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADS--LVYN 250 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~~~~ 250 (851)
+...+..++..+...|++++|+..|+++++..+..+. ..++..++.+|.+.|++++|++.|+++++....-.. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4456777888899999999999999999998766443 468889999999999999999999999987654221 3555
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 038852 251 NLISGFLN------------------LGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF 312 (851)
Q Consensus 251 ~Li~~~~~------------------~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 312 (851)
.++.++.. .|++++|+..|+++++.... +...+..+..+ ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH----
Confidence 66666654 46778888888887776543 22222211110 00001100
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCC
Q 038852 313 RMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSK 389 (851)
Q Consensus 313 ~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~ 389 (851)
.....++..|.+.|++++|+..|+++++...... ....++..++.+|.+.|++++|++.|+.+....+..
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ---ATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC---ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 1223578889999999999999999998643321 157899999999999999999999999987766554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-08 Score=107.80 Aligned_cols=194 Identities=5% Similarity=0.004 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG-KVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g-~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
.+++.+...+.+.+..++|++++++++..+. .+..+|+....++...| ++++++++++.++..++. +..+|+...
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP--~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK--ny~aW~hR~ 130 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNP--AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK--SYQVWHHRL 130 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC--cHHHHHHHH
Confidence 3444444444445555788888888877543 35667888777777788 488888888888887766 777888887
Q ss_pred HHHHHc-C-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCC
Q 038852 219 KGFVDA-G-RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGK 296 (851)
Q Consensus 219 ~~~~~~-g-~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~ 296 (851)
.++... + ++++++++++++++...+ |..+|+....++.+.|.++.+ + ...
T Consensus 131 wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~--------------~-------------~~~ 182 (349)
T 3q7a_A 131 LLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRI--------------S-------------EAQ 182 (349)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCC--------------C-------------HHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccccc--------------c-------------hhh
Confidence 777776 6 778888888888887666 777777766666555544300 0 001
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHc
Q 038852 297 DKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEK-------KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH 369 (851)
Q Consensus 297 ~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~-------~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~ 369 (851)
+++++++++++++.++ -|...|+....++.+.++ ++++++++++++..... |..+|+.+...+.+.
T Consensus 183 ~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~------n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 183 WGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH------NVSAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhc
Confidence 2355555566655554 244667666666666665 67888888888875433 788888877777776
Q ss_pred CCh
Q 038852 370 GKF 372 (851)
Q Consensus 370 g~~ 372 (851)
|+.
T Consensus 256 ~~~ 258 (349)
T 3q7a_A 256 SLP 258 (349)
T ss_dssp TCC
T ss_pred CCC
Confidence 654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=8.6e-11 Score=110.93 Aligned_cols=144 Identities=8% Similarity=-0.052 Sum_probs=88.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 038852 146 IAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG 225 (851)
Q Consensus 146 i~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g 225 (851)
+.++...|++++|++.|...+... ..+...+..|+.+|.+.|++++|++.|+++++.++. +..+|..++.+|...|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER--DPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcC
Confidence 344445567777777776664321 012334556677777777777777777777777655 6667777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCccchhhHHHHHHHHHHcC
Q 038852 226 RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANEL-FDELKQRCLVYDGVVNATFMEWWFNQG 295 (851)
Q Consensus 226 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~-~~~~~~~~~~~d~~~~~~li~~~~~~g 295 (851)
++++|+..|+++++.... +..+|..++.+|.+.|++++|.+. ++++++..+. +..++......+...|
T Consensus 80 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 777777777777776554 666777777777777776655443 4666665544 4445554444444444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.6e-09 Score=106.08 Aligned_cols=176 Identities=9% Similarity=0.003 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHH
Q 038852 157 DAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG----RIGEAVD 232 (851)
Q Consensus 157 ~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g----~~~~A~~ 232 (851)
+|+++|++..+. -+...+..|..+|...+++++|+++|+++.+.+ +..++..|..+|.. + ++++|++
T Consensus 4 eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 4 EPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred hHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 344555555432 245555555555655666666666666655543 44555555555555 4 5666666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCc-cchhhHHHHHHHHHH----cCCHHHHHHH
Q 038852 233 LLRDMLSRQLGADSLVYNNLISGFLN----LGNLEKANELFDELKQRCLV-YDGVVNATFMEWWFN----QGKDKEAMQS 303 (851)
Q Consensus 233 l~~~m~~~g~~pd~~~~~~Li~~~~~----~g~~~~A~~~~~~~~~~~~~-~d~~~~~~li~~~~~----~g~~~~A~~l 303 (851)
+|+++.+.| +...+..|..+|.. .+++++|+++|++..+.+.. .+...+..|..+|.. .+++++|+++
T Consensus 75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 666665543 44555556655555 55666666666666555431 014455555555555 5566666666
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhC-C-----CHHHHHHHHHHHHHcC
Q 038852 304 YKSLMERNFRMTPATCNTLLEVLLKH-E-----KKEEAQALFEQMLDNH 346 (851)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~Li~~~~~~-g-----~~~~A~~l~~~m~~~~ 346 (851)
|++..+.+ .+...+..|..+|... | ++++|+.+|+++.+.|
T Consensus 152 ~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66665551 1223555566666543 2 6777777777776654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.16 E-value=4.7e-09 Score=109.67 Aligned_cols=251 Identities=12% Similarity=0.055 Sum_probs=178.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG 189 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g 189 (851)
-|+...-.|.+..++.-..++ ...........+.++|...|+++... .-.|....+..+... .. +
T Consensus 19 ~ikn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~~----------~~~~~~~a~~~la~~-~~-~ 83 (310)
T 3mv2_B 19 NIKQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQD----------PTSKLGKVLDLYVQF-LD-T 83 (310)
T ss_dssp HHHHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCCC----------SSSTTHHHHHHHHHH-HT-T
T ss_pred HHHHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccCC----------CCCHHHHHHHHHHHH-hc-c
Confidence 467777889999988744332 22223344445668888888877421 122444444444443 33 2
Q ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038852 190 KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQL-GADSLVYNNLISGFLNLGNLEKANEL 268 (851)
Q Consensus 190 ~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~~~~~Li~~~~~~g~~~~A~~~ 268 (851)
+ |+..|++.++.+ .++..++..++.++...|++++|++++.+.+..+. .-+...+..++.+|.+.|+.+.|.++
T Consensus 84 ~---a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 84 K---NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp T---CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred c---HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2 788888877653 33566777899999999999999999999988764 22678888999999999999999999
Q ss_pred HHHHHhcCC---ccchhhHHHHHHH--HHHcC--CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 038852 269 FDELKQRCL---VYDGVVNATFMEW--WFNQG--KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQ 341 (851)
Q Consensus 269 ~~~~~~~~~---~~d~~~~~~li~~--~~~~g--~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~ 341 (851)
+++|.+... ..+..+...|+.+ ....| ++.+|..+|+++.+... +..+...++.++...|++++|.++++.
T Consensus 159 l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p--~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 159 FDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFP--TWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC--CcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999987654 1134555556555 33334 89999999999876643 322333445589999999999999997
Q ss_pred HHHcC-----C---CCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCC
Q 038852 342 MLDNH-----Q---PPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKS 388 (851)
Q Consensus 342 m~~~~-----~---~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~ 388 (851)
+++.. . .|+ +..++..++.++...|+ +|.+++.++....+.
T Consensus 237 l~~~~p~~~~k~~~~p~----~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLY----KPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHSHHHHTTTCHHHHSS----HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred HHHhcccccccccCCCC----CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 76531 0 243 78888888888888887 889999999887666
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.5e-10 Score=108.37 Aligned_cols=164 Identities=15% Similarity=0.140 Sum_probs=117.9
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
..+......+...|++++|+..|++++... +.+...+..+..++.+.|++++|+..|+++++..+ +...+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~~~~ 82 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ---DNSYKSLIAKL 82 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---ChHHHHHHHHH
Confidence 346677888888888888888888877654 34677788888888888888888888888765433 43333332222
Q ss_pred -HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCH
Q 038852 185 -YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA-DSLVYNNLISGFLNLGNL 262 (851)
Q Consensus 185 -~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~Li~~~~~~g~~ 262 (851)
+...++..+|+..|+++++.+|. +...+..++.++...|++++|++.|+++++..... +...+..++.+|...|+.
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPD--NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHhhcccchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 12223334578888888887766 67788888888888888888888888888775442 345777788888888888
Q ss_pred HHHHHHHHHHHh
Q 038852 263 EKANELFDELKQ 274 (851)
Q Consensus 263 ~~A~~~~~~~~~ 274 (851)
++|...|++.+.
T Consensus 161 ~~A~~~y~~al~ 172 (176)
T 2r5s_A 161 NAIASKYRRQLY 172 (176)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 888888877654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.8e-09 Score=106.90 Aligned_cols=177 Identities=13% Similarity=0.013 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC----ChHHHHHH
Q 038852 122 AASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG----KVDEGMNV 197 (851)
Q Consensus 122 ~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g----~~~~A~~l 197 (851)
+|+..|+++...+ +...+..|...|...+++++|+++|+++.+. -+...+..|..+|.. + ++++|+++
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GDGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 4677888887664 7889999999999999999999999999764 377889999998888 7 89999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHH
Q 038852 198 FRRIIETAPVGPSSNTYRHLTKGFVD----AGRIGEAVDLLRDMLSRQLG-ADSLVYNNLISGFLN----LGNLEKANEL 268 (851)
Q Consensus 198 ~~~~~~~~~~~p~~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~~g~~-pd~~~~~~Li~~~~~----~g~~~~A~~~ 268 (851)
|+++.+.+ +..++..|..+|.. .+++++|+++|+++.+.+.. -+...+..|..+|.. .+++++|+++
T Consensus 76 ~~~A~~~g----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 76 AEKAVEAG----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHTT----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHCC----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 99998764 77899999999987 88999999999999988642 026888999999998 8899999999
Q ss_pred HHHHHhcCCccchhhHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhcC
Q 038852 269 FDELKQRCLVYDGVVNATFMEWWFNQ-G-----KDKEAMQSYKSLMERNF 312 (851)
Q Consensus 269 ~~~~~~~~~~~d~~~~~~li~~~~~~-g-----~~~~A~~l~~~~~~~~~ 312 (851)
|++..+.+ .+...+..|..+|... | ++++|+++|+...+.|.
T Consensus 152 ~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 152 FKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99998872 2445677788888764 3 89999999999998875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.7e-10 Score=109.59 Aligned_cols=56 Identities=11% Similarity=0.207 Sum_probs=23.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038852 182 INTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS 239 (851)
Q Consensus 182 i~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 239 (851)
+..+...|++++|+..|+++++.+|. +...|..++.++...|++++|+++|+++++
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDELQS--RGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHT--SHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 33344444444444444444443333 333444444444444444444444444433
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-09 Score=114.75 Aligned_cols=165 Identities=15% Similarity=0.105 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
+...+..+...+.+.|++++|+.+|+++++..+ .+...+..|+.+|...|++++|+.+|+++++.++. +...+..+
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~--~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN--QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD--TRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS--HHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc--hHHHHHHH
Confidence 334445555555566666666666666555432 23455555666666666666666666655544331 22222222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc-chhhHHHHHHHHHHcCC
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVY-DGVVNATFMEWWFNQGK 296 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~-d~~~~~~li~~~~~~g~ 296 (851)
...+...++.++|++.|+++++.... +...+..++.+|...|++++|++.|+++++..... +...+..++.+|...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 33344555555556666665555444 55555566666666666666666666655554331 24445555555555555
Q ss_pred HHHHHHHHHHH
Q 038852 297 DKEAMQSYKSL 307 (851)
Q Consensus 297 ~~~A~~l~~~~ 307 (851)
.++|...|++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 55555555543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-10 Score=108.90 Aligned_cols=145 Identities=12% Similarity=-0.044 Sum_probs=96.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG 260 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g 260 (851)
|+.++...|++++|++.|.+++...+. +...+..|+.+|.+.|++++|++.|+++++.... +..+|..++.+|.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~--~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ--KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH--HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 445556667778888887777554332 3445667778888888888888888888877655 7777888888888888
Q ss_pred CHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 038852 261 NLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQS-YKSLMERNFRMTPATCNTLLEVLLKHE 330 (851)
Q Consensus 261 ~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l-~~~~~~~~~~~~~~~~~~Li~~~~~~g 330 (851)
++++|+..|+++++.+.. +..++..++.+|.+.|++++|.+. ++++++.++ .+..+|......+...|
T Consensus 80 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 888888888887776655 566666666677777766655544 366666554 24455555555555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.9e-08 Score=107.16 Aligned_cols=180 Identities=8% Similarity=-0.014 Sum_probs=138.7
Q ss_pred cHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDL-DAASYLARQAVFSRIRPTVFTCNAIIAAMYRAK-RYDDAVALFKYFFDQADIVPNIVSYNNLIN 183 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~-~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~ 183 (851)
.+...++++.+.+.+ ++|+.++++++... ..+..+|+.-..++...| ++++++++++.++.... .+..+|+....
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP--Kny~aW~hR~w 131 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL--KSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC--CcHHHHHHHHH
Confidence 445556666666655 68999999999876 346778999888888888 59999999999988643 57788999888
Q ss_pred HHHHc-C-ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 184 TYCDE-G-KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIG--------EAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 184 ~~~~~-g-~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~--------~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
++... + ++++++++++++++.++. |..+|+....++.+.|.++ +++++++++++.++. |..+|+...
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpk--Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~ 208 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPK--NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRW 208 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTT--CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 88887 7 899999999999998766 8889998888887777766 899999999998777 888898888
Q ss_pred HHHHhcCC-------HHHHHHHHHHHHhcCCccchhhHHHHHHHHH
Q 038852 254 SGFLNLGN-------LEKANELFDELKQRCLVYDGVVNATFMEWWF 292 (851)
Q Consensus 254 ~~~~~~g~-------~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~ 292 (851)
.++.+.+. ++++++++++++...+. |...|+.+...+.
T Consensus 209 ~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 209 YLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLK 253 (349)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 88877775 45566666665555444 4444444333333
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-09 Score=112.62 Aligned_cols=167 Identities=9% Similarity=0.054 Sum_probs=111.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
+...+..++..+...|++++|+.+|+++++.+|. +..++..|+.+|...|++++|+++|+++.+.... +......+.
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ--NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS--CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc--chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHHH
Confidence 4456667777777888888888888888877766 6677777888888888888888888877765432 222333333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCCH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRM-TPATCNTLLEVLLKHEKK 332 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~-~~~~~~~Li~~~~~~g~~ 332 (851)
..+...++.++|++.|+++++.... +...+..++.+|...|++++|++.|+++++.++.. +...+..|+.+|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 3455666777777777777776654 56666667777777777777777777776665432 234566666666666666
Q ss_pred HHHHHHHHHHHH
Q 038852 333 EEAQALFEQMLD 344 (851)
Q Consensus 333 ~~A~~l~~~m~~ 344 (851)
++|...|++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 666666666543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=5.2e-09 Score=121.84 Aligned_cols=156 Identities=12% Similarity=0.015 Sum_probs=123.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 038852 117 AGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMN 196 (851)
Q Consensus 117 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~ 196 (851)
.|++++|+..+++++... ..+...|..+...|.+.|++++|++.|+++++... .+..+|..++.+|...|++++|++
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP--GHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST--TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999988654 34678899999999999999999999999987543 467889999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 038852 197 VFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL---GNLEKANELFDELK 273 (851)
Q Consensus 197 l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~---g~~~~A~~~~~~~~ 273 (851)
.|+++++.++. +...|..++.+|...|++++|++.|+++++.... +..++..++.++... |++++|.+.|++++
T Consensus 79 ~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDAAPE--HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 99999998776 7889999999999999999999999999998665 788999999999999 99999999999999
Q ss_pred hcCCc
Q 038852 274 QRCLV 278 (851)
Q Consensus 274 ~~~~~ 278 (851)
+.+..
T Consensus 156 ~~~p~ 160 (568)
T 2vsy_A 156 AQGVG 160 (568)
T ss_dssp HHTCC
T ss_pred hcCCc
Confidence 87654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-08 Score=106.38 Aligned_cols=269 Identities=11% Similarity=0.081 Sum_probs=179.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCH
Q 038852 253 ISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKK 332 (851)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~ 332 (851)
++-..-.|++..++.-..+ .....+......+.++|...|+++... ...+....+..+... ...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~---~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~-~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEK---FSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQF-LDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHT---SSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHH-HTTT--
T ss_pred HHHHHHhhHHHHHHHHHHh---cCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHH-hccc--
Confidence 4556667999998874333 222223345555667788888876421 222333344434333 3322
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHH
Q 038852 333 EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLE 412 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 412 (851)
|+..|++.+..+ .+ +..++..++.++...|++++|++++.+.+...+... +...+..++.++.+.|+.+
T Consensus 85 --a~~~l~~l~~~~-~~-----~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~---~lea~~l~vqi~L~~~r~d 153 (310)
T 3mv2_B 85 --NIEELENLLKDK-QN-----SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG---TTELLLLAIEVALLNNNVS 153 (310)
T ss_dssp --CCHHHHHTTTTS-CC-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTT---HHHHHHHHHHHHHHTTCHH
T ss_pred --HHHHHHHHHhcC-CC-----CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcC---cHHHHHHHHHHHHHCCCHH
Confidence 788888877654 22 456667899999999999999999999865543112 7888889999999999999
Q ss_pred HHHHHHHHHHhCCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHH
Q 038852 413 EAEKLLREISTKSLSP-----DVTTFRTLIDA--YLKVE--RIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAE 483 (851)
Q Consensus 413 ~A~~l~~~m~~~g~~p-----d~~~~~~Ll~~--~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~ 483 (851)
.|.+++++|.+. .+ +..+...|+.+ ....| ++.+|..+|+++.+... +......++.++...|++++
T Consensus 154 ~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p--~~~~~~lLln~~~~~g~~~e 229 (310)
T 3mv2_B 154 TASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFP--TWKTQLGLLNLHLQQRNIAE 229 (310)
T ss_dssp HHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC--CcccHHHHHHHHHHcCCHHH
Confidence 999999999865 45 25555666655 33344 89999999999877543 21222235558999999999
Q ss_pred HHHHHHHHhhCC-----C----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038852 484 CAPILTKMGEKD-----P----KPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEI 554 (851)
Q Consensus 484 A~~ll~~m~~~~-----~----~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA 554 (851)
|.++++.+.+.. . .-|..++..+|..+...|+ +|.++++++.+.. +..+.+. ++++.
T Consensus 230 Ae~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~-P~hp~i~-----------d~~~k 295 (310)
T 3mv2_B 230 AQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD-HEHAFIK-----------HHQEI 295 (310)
T ss_dssp HHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT-CCCHHHH-----------HHHHH
T ss_pred HHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC-CCChHHH-----------HHHHH
Confidence 999999776531 0 2256677677777777787 8899999998754 2222222 34455
Q ss_pred HHHHHhhhhcC
Q 038852 555 ERVLNADRWGY 565 (851)
Q Consensus 555 ~~ll~~~~~~~ 565 (851)
...|+++..+|
T Consensus 296 ~~~Fd~~~~ky 306 (310)
T 3mv2_B 296 DAKFDELVRKY 306 (310)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 66677766655
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.2e-09 Score=123.64 Aligned_cols=156 Identities=12% Similarity=0.083 Sum_probs=124.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038852 152 AKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAV 231 (851)
Q Consensus 152 ~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~ 231 (851)
.|++++|++.|+++++... .+...|..++.+|...|++++|++.|+++++.++. +..+|..++.+|...|++++|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP--QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG--HPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHH
Confidence 4789999999999876532 35788999999999999999999999999998766 7889999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHc---CCHHHHHHHHHHHH
Q 038852 232 DLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQ---GKDKEAMQSYKSLM 308 (851)
Q Consensus 232 ~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~---g~~~~A~~l~~~~~ 308 (851)
+.|+++++.... +...+..++.+|.+.|++++|++.|+++++.+.. +...+..++.++... |++++|++.|++++
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999999998665 7889999999999999999999999999988765 678888999999999 99999999999999
Q ss_pred HhcCC
Q 038852 309 ERNFR 313 (851)
Q Consensus 309 ~~~~~ 313 (851)
+.+..
T Consensus 156 ~~~p~ 160 (568)
T 2vsy_A 156 AQGVG 160 (568)
T ss_dssp HHTCC
T ss_pred hcCCc
Confidence 88754
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.8e-08 Score=100.50 Aligned_cols=131 Identities=15% Similarity=0.065 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKG 220 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~ 220 (851)
.+..++..+...|++++|++.|++++ .++..+|..++.+|...|++++|++.|+++++.++. +..+|..++.+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~lg~~ 80 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH--LAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--chHHHHHHHHH
Confidence 34556667777888888888887763 346777888888888888888888888888877655 67778888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 038852 221 FVDAGRIGEAVDLLRDMLSRQLGA---------------DSLVYNNLISGFLNLGNLEKANELFDELKQRCLV 278 (851)
Q Consensus 221 ~~~~g~~~~A~~l~~~m~~~g~~p---------------d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~ 278 (851)
|...|++++|++.|+++++..... +..++..++.+|.+.|++++|++.|+++++....
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 888888888888888887754331 1267777888888888888888888887776544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-07 Score=98.20 Aligned_cols=99 Identities=5% Similarity=0.033 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHH
Q 038852 155 YDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG--KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGR-IGEAV 231 (851)
Q Consensus 155 ~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g--~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~-~~~A~ 231 (851)
+++++.+++.++.... .+..+|+.-..++...+ ++++++++++++++.++. |..+|+....++...|. +++++
T Consensus 90 l~~EL~~~~~~L~~~P--Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr--Ny~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRVNP--KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER--NFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCcCHHHHH
Confidence 3444444444444322 23444444444444444 244555555555554433 44444444444444444 34555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038852 232 DLLRDMLSRQLGADSLVYNNLISGFLN 258 (851)
Q Consensus 232 ~l~~~m~~~g~~pd~~~~~~Li~~~~~ 258 (851)
+.++++++.++. |..+|+....++.+
T Consensus 166 ~~~~~~I~~~p~-N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 166 AFTDSLITRNFS-NYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 555555544444 44444444444433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.8e-07 Score=97.75 Aligned_cols=224 Identities=8% Similarity=-0.050 Sum_probs=162.1
Q ss_pred HHcCChh-HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 150 YRAKRYD-DAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK----------VDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 150 ~~~g~~~-~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~----------~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
.+.|.++ +|+++++.++..++ -+..+|+.-..++...++ +++++.+++.++..++. +..+|+...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP--~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK--ny~aW~hR~ 115 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK--SYGTWHHRC 115 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence 3566665 79999999987533 345667776666655554 68899999999998876 888999998
Q ss_pred HHHHHcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHc-
Q 038852 219 KGFVDAG--RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGN-LEKANELFDELKQRCLVYDGVVNATFMEWWFNQ- 294 (851)
Q Consensus 219 ~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~-~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~- 294 (851)
.++...+ ++++++++++++++...+ |..+|+....++...|. ++++++.++++++.++. |...|+....++.+.
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHS
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhh
Confidence 8888888 489999999999999877 88999999998888898 68999999999998877 777787777766665
Q ss_pred -------------CCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHcCCCCC
Q 038852 295 -------------GKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKH-----------EKKEEAQALFEQMLDNHQPPN 350 (851)
Q Consensus 295 -------------g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~-----------g~~~~A~~l~~~m~~~~~~p~ 350 (851)
+.+++++++++.++..++ -|..+|+.+-..+.+. +.++++++.++++++. .|+
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd 270 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPE 270 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTT
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Ccc
Confidence 457888888888888765 4667777655555544 3467777778777774 343
Q ss_pred CCccCHHHHHHHHHHH---HHcCChHHHHHHHHHhccCC
Q 038852 351 IQAVNSDTFNIMVNEC---FKHGKFSEAIETFKKAGTHP 386 (851)
Q Consensus 351 ~~~~~~~~~~~L~~~~---~~~g~~~~A~~~~~~~~~~~ 386 (851)
+.-.+..++... ...+..+++..++.++.+.+
T Consensus 271 ----~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 271 ----NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp ----CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred ----cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 322222222211 12445556666666665443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.98 E-value=4.7e-09 Score=110.31 Aligned_cols=195 Identities=11% Similarity=0.042 Sum_probs=111.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
+...+..++..+...|++++|+..|+++++.++. +...|..++.+|.+.|++++|++.|+++++.... +...+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 4456667777777777777777777777777655 6677777777777777777777777777776544 667777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKE 333 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~ 333 (851)
.+|...|++++|+..|+++++.+.. +...+...+....+. .++.. +..+.......+......+... ..|+++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 7777777777777777777654322 110111111111110 11111 1112222222233333333322 246777
Q ss_pred HHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHc-CChHHHHHHHHHhcc
Q 038852 334 EAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH-GKFSEAIETFKKAGT 384 (851)
Q Consensus 334 ~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~-g~~~~A~~~~~~~~~ 384 (851)
+|++.++++++. .|+ +......+...+.+. +.+++|.++|.++.+
T Consensus 153 ~A~~~~~~al~~--~p~----~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEG--HED----DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTT--TSC----HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhcc--ccc----hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777776653 332 344444444445444 556777777777654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.5e-08 Score=107.00 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----CCCH
Q 038852 248 VYNNLISGFLNLGNLEKANELFDELKQR------CLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF-----RMTP 316 (851)
Q Consensus 248 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~------~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-----~~~~ 316 (851)
+++.++.+|...|++++|+.+|+++++. .......++..++.+|.+.|++++|+++++++++... ..-.
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 3444444444444444444444444421 0111122444445555555555555555554443211 0113
Q ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Q 038852 317 ATCNTLLEVLLKHE-KKEEAQALFEQMLD 344 (851)
Q Consensus 317 ~~~~~Li~~~~~~g-~~~~A~~l~~~m~~ 344 (851)
.+|..++.+|.+.| ++++|++.|++++.
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 45566666666666 34666666666554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.7e-08 Score=106.68 Aligned_cols=134 Identities=13% Similarity=0.080 Sum_probs=79.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCcc-c----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCCHHHH
Q 038852 251 NLISGFLNLGNLEKANELFDELKQRCLVY-D----GVVNATFMEWWFNQGKDKEAMQSYKSLMER------NFRMTPATC 319 (851)
Q Consensus 251 ~Li~~~~~~g~~~~A~~~~~~~~~~~~~~-d----~~~~~~li~~~~~~g~~~~A~~l~~~~~~~------~~~~~~~~~ 319 (851)
.++..+...+++++|+..|+++++..... + ..+++.++.+|...|++++|+++|+++++. +......++
T Consensus 120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 199 (293)
T 3u3w_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence 34555555556666666666665532111 1 235667777777777777777777777641 111122356
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcC-ChHHHHHHHHHhcc
Q 038852 320 NTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHG-KFSEAIETFKKAGT 384 (851)
Q Consensus 320 ~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~~~ 384 (851)
..++.+|.+.|++++|+++++++++.....+....-..+|..++.+|.+.| ++++|++.|+++..
T Consensus 200 ~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 667777777777777777777766432111111113677777777777777 77777777766543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-08 Score=92.04 Aligned_cols=97 Identities=11% Similarity=0.087 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKG 220 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~ 220 (851)
.+..++..|.+.|++++|++.|+++++..+ .+..+|..++.+|.+.|++++|++.|+++++.++. +..+|..++.+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~lg~~ 90 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDP--ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK--FIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh--hhHHHHHHHHH
Confidence 344444444445555555555544444322 23444444444444445555555444444444433 44444444444
Q ss_pred HHHcCCHHHHHHHHHHHHhcC
Q 038852 221 FVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 221 ~~~~g~~~~A~~l~~~m~~~g 241 (851)
|...|++++|++.|+++++..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHC
Confidence 444444444444444444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-08 Score=91.27 Aligned_cols=111 Identities=12% Similarity=0.094 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLIS 254 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~ 254 (851)
...+..++..|.+.|++++|++.|+++++.++. +..+|..++.+|.+.|++++|++.|+++++.+.. +...|..++.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~ 89 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE--NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHH
Confidence 456777888888888888888888888888766 7788888888888888888888888888887665 7788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHH
Q 038852 255 GFLNLGNLEKANELFDELKQRCLVYDGVVNATFME 289 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~ 289 (851)
+|...|++++|++.|+++++.++. +..++..+..
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~~ 123 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPS-NEEAREGVRN 123 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHHH
Confidence 888888888888888888887665 5555555544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3.5e-08 Score=93.58 Aligned_cols=96 Identities=13% Similarity=0.184 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
.|..++..+...|++++|+..|+++++..+. +..+|..++.++...|++++|++.|+++++.... +..+|..++.+|
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 3444555555555555555555555554433 4445555555555555555555555555554332 444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 038852 257 LNLGNLEKANELFDELKQR 275 (851)
Q Consensus 257 ~~~g~~~~A~~~~~~~~~~ 275 (851)
...|++++|+++|+++++.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh
Confidence 5555555555555555544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.93 E-value=4e-08 Score=103.78 Aligned_cols=167 Identities=14% Similarity=0.151 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CC--HH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSS----NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG---AD--SL 247 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~----~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~---pd--~~ 247 (851)
.+...+..+...|++++|++.+++.++......+. ..+..++..+...|++++|++.|+++++.... .. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 44556667777888888888887777654331111 22344555666677777777777777653221 11 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCc-c--chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----CCH
Q 038852 248 VYNNLISGFLNLGNLEKANELFDELKQR---CLV-Y--DGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR-----MTP 316 (851)
Q Consensus 248 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~---~~~-~--d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~-----~~~ 316 (851)
+|+.++.+|...|++++|+.+|+++++. ... . ...++..++.+|.+.|++++|+++|+++++.... ...
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6777777777777777777777776632 111 0 1135555555555566666666555555433210 012
Q ss_pred HHHHHHHHHHHhCCCHHHH-HHHHHHHH
Q 038852 317 ATCNTLLEVLLKHEKKEEA-QALFEQML 343 (851)
Q Consensus 317 ~~~~~Li~~~~~~g~~~~A-~~l~~~m~ 343 (851)
.+|..++.+|.+.|++++| ...|++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3445555555555555555 44454443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.6e-08 Score=92.80 Aligned_cols=131 Identities=13% Similarity=0.119 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
...|..++..+...|++++|+..|+++++... .+..+|..++.++...|++++|++.|+++++.++. +..+|..++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHHHH
Confidence 34677788888899999999999999887543 36788889999999999999999999999988765 778899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHh
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNN--LISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~--Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
.++...|++++|+++|+++++.... +...+.. ++..+.+.|++++|+++++....
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999987655 5555543 44447778888888888876543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.92 E-value=7.6e-08 Score=101.56 Aligned_cols=172 Identities=10% Similarity=0.059 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN----IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS---- 210 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd----~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~---- 210 (851)
...+...+..+...|++++|++.+++.++......+ ...+..++..+...|++++|++.|+++++......+
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 456666777888889999999988887765432221 123456777778888999999999888764322111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc-----c
Q 038852 211 SNTYRHLTKGFVDAGRIGEAVDLLRDMLS---RQLGA---DSLVYNNLISGFLNLGNLEKANELFDELKQRCLV-----Y 279 (851)
Q Consensus 211 ~~~~~~Li~~~~~~g~~~~A~~l~~~m~~---~g~~p---d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~-----~ 279 (851)
..+|+.++.+|...|++++|+++|+++++ ..... +..++..++.+|.+.|++++|+++|+++++.... .
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45788888899999999999999988873 21110 1257888888999999999999998887754211 1
Q ss_pred chhhHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 038852 280 DGVVNATFMEWWFNQGKDKEA-MQSYKSLMER 310 (851)
Q Consensus 280 d~~~~~~li~~~~~~g~~~~A-~~l~~~~~~~ 310 (851)
-..++..++.+|.+.|++++| ...|++++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 256778888889999999998 7778877654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.6e-07 Score=102.99 Aligned_cols=97 Identities=7% Similarity=-0.072 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----ccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCC----H
Q 038852 248 VYNNLISGFLNLGNLEKANELFDELKQRCL-----VYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN--FRMT----P 316 (851)
Q Consensus 248 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~-----~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--~~~~----~ 316 (851)
++..|+..|...|++++|..+++++..... .....++..++.+|...|++++|..++++++... ...+ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 444455555555555555555554433210 1113344555555555555555555555544321 1111 1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 038852 317 ATCNTLLEVLLKHEKKEEAQALFEQMLD 344 (851)
Q Consensus 317 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 344 (851)
..+..++..+...+++++|...|.++.+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455566666777777777777776654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.8e-08 Score=102.52 Aligned_cols=201 Identities=9% Similarity=-0.039 Sum_probs=148.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCChhHHHHHHHHHHHc-----------
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAI-------IAAMYRAKRYDDAVALFKYFFDQ----------- 168 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~~~~~----------- 168 (851)
++.....+ ..++...|+..|.+++... +-....|+.+ ...+.+.++..+++..+.+.+..
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 44555555 5899999999999999776 3467888888 67777777788888777766541
Q ss_pred CCCC--------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 169 ADIV--------PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 169 ~~~~--------pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
.|.- --...+..++.++...|++++|.++|+.+...++. +. ....+...+.+.+++++|+..|+...+.
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~--~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~ 164 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE--HL-VAWMKAVVYGAAERWTDVIDQVKSAGKW 164 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH--HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc--hH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence 1110 00234556777888999999999999988765432 33 7777788899999999999999866554
Q ss_pred CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc--chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 038852 241 QLGAD--SLVYNNLISGFLNLGNLEKANELFDELKQRCLVY--DGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR 313 (851)
Q Consensus 241 g~~pd--~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~ 313 (851)
. .+. ..++..++.++...|++++|++.|+++......| .......+..++.+.|+.++|..+|+++...++.
T Consensus 165 ~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 165 P-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred C-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 2 111 3467888999999999999999999988544213 3456677788889999999999999999888764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.4e-08 Score=95.60 Aligned_cols=100 Identities=16% Similarity=0.093 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLIS 254 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~ 254 (851)
...+..++.++.+.|++++|+..|+++++.+|. +...|..++.+|...|++++|++.|+++++..+. +...|..++.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY--NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 445666777777777777777777777777665 6667777777777777777777777777776555 5666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC
Q 038852 255 GFLNLGNLEKANELFDELKQRCL 277 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~~~ 277 (851)
+|.+.|++++|++.|+++++...
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Confidence 77777777777777777766543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-08 Score=103.82 Aligned_cols=192 Identities=10% Similarity=-0.046 Sum_probs=134.8
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhc------------CC-----
Q 038852 187 DEGKVDEGMNVFRRIIETAPVGPSSNTYRHL-------TKGFVDAGRIGEAVDLLRDMLSR------------QL----- 242 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L-------i~~~~~~g~~~~A~~l~~~m~~~------------g~----- 242 (851)
..++...|++.|.++.+.++. ....|+.+ ..++.+.++..+++..+...++. |.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 468888888888888888776 66688777 56666666677777776666651 11
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-CHHH
Q 038852 243 ---GADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRM-TPAT 318 (851)
Q Consensus 243 ---~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~-~~~~ 318 (851)
.--...+..++.++...|++++|.++|+.+...+.. +. ....+...+.+.+++++|+..|+......... ....
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 001244556777788888888888888877765533 33 66666778888888888888887554332100 1236
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccC
Q 038852 319 CNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTH 385 (851)
Q Consensus 319 ~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 385 (851)
+..+..++...|++++|++.|+++......|.. .......++.++.+.|+.++|..+|+++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~---~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEAC---ARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 677888889999999999999988753322421 3457788888888999999999999888654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.89 E-value=6.2e-08 Score=96.45 Aligned_cols=132 Identities=11% Similarity=-0.005 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISG 255 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~ 255 (851)
..+..++..+...|++++|++.|++++ .++..+|..++.+|...|++++|++.|+++++.... +..+|..++.+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHH
Confidence 346677888899999999999999884 347889999999999999999999999999988655 78899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcc---------------chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 038852 256 FLNLGNLEKANELFDELKQRCLVY---------------DGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR 313 (851)
Q Consensus 256 ~~~~g~~~~A~~~~~~~~~~~~~~---------------d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~ 313 (851)
|...|++++|++.|+++++..... ...++..++.+|.+.|++++|++.|+++++.+..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 999999999999999998854331 2367788888899999999999999988887653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.5e-08 Score=98.25 Aligned_cols=122 Identities=15% Similarity=0.071 Sum_probs=60.2
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcC
Q 038852 150 YRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPV----GPSSNTYRHLTKGFVDAG 225 (851)
Q Consensus 150 ~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~----~p~~~~~~~Li~~~~~~g 225 (851)
...|++++|+++++.+.. .......++..++.+|...|++++|+..|+++++.... .....++..++.+|...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 346677777774444322 11123456666666666667777777666666552110 012334555555566666
Q ss_pred CHHHHHHHHHHHHhc---CC-C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038852 226 RIGEAVDLLRDMLSR---QL-G--ADSLVYNNLISGFLNLGNLEKANELFDELK 273 (851)
Q Consensus 226 ~~~~A~~l~~~m~~~---g~-~--pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~ 273 (851)
++++|++.|+++++. .. . ....++..++.++...|++++|++.|++.+
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666666666555443 11 1 012334445555555555555555555544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-08 Score=99.73 Aligned_cols=166 Identities=14% Similarity=0.077 Sum_probs=83.2
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C---CCCHHHHHHHHHHHHhcC
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ--L---GADSLVYNNLISGFLNLG 260 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g--~---~pd~~~~~~Li~~~~~~g 260 (851)
...|++++|+++++.+.. ++ .....++..++.++...|++++|++.|+++++.. . .....++..++.+|...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HP-ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT-ST-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC-Ch-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 455677777774444422 21 1245566666667777777777777776665521 0 012244555566666666
Q ss_pred CHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 038852 261 NLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFE 340 (851)
Q Consensus 261 ~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~ 340 (851)
++++|++.|++.++.... .++ .......++..++.++...|++++|+++|+
T Consensus 81 ~~~~A~~~~~~al~~~~~---------------~~~--------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 131 (203)
T 3gw4_A 81 NWDAARRCFLEERELLAS---------------LPE--------------DPLAASANAYEVATVALHFGDLAGARQEYE 131 (203)
T ss_dssp CHHHHHHHHHHHHHHHHH---------------SCC--------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH---------------cCc--------------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 666666666555443000 000 000011345555666666666666666666
Q ss_pred HHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 341 QMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 341 ~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
++++.....+.......++..++.+|...|++++|+++|+++
T Consensus 132 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 132 KSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 655321110000001234566677777777777777777665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.86 E-value=8.3e-07 Score=98.91 Aligned_cols=203 Identities=10% Similarity=-0.029 Sum_probs=152.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPT----------------VFTCNAIIAAMYRAKRYDDAVALFKYFFDQAD 170 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 170 (851)
....++.+.+.|++++|++.|..++....... ..++..|+..|.+.|++++|+++|..++...+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 44668889999999999999999987543211 13477899999999999999999998876433
Q ss_pred CCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 038852 171 IVPNI----VSYNNLINTYCDEGKVDEGMNVFRRIIETA---PVG-PSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 171 ~~pd~----~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~---~~~-p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~ 242 (851)
...+. .+.+.+...+...|++++|++++++++... ... .-..++..|+..|...|++++|+.+++++...-.
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 22232 234445555556799999999999887542 111 2256788999999999999999999998875321
Q ss_pred CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--Cc-c---chhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 243 GA-----DSLVYNNLISGFLNLGNLEKANELFDELKQRC--LV-Y---DGVVNATFMEWWFNQGKDKEAMQSYKSLME 309 (851)
Q Consensus 243 ~p-----d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~--~~-~---d~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 309 (851)
.. ...++..++.+|...|++++|..++++++... .. + -..++..++..+...|++++|...|.++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 24688899999999999999999999887542 11 1 135666777788889999999999888765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.9e-08 Score=88.07 Aligned_cols=97 Identities=11% Similarity=0.141 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISG 255 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~ 255 (851)
..|..++..+...|++++|+++|+++++..+. +..+|..++.+|...|++++|+++|+++++.... +..++..++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK--DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT--CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 34444444444444444444444444443322 3444444444444444444444444444444322 34444444444
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 038852 256 FLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 256 ~~~~g~~~~A~~~~~~~~~~ 275 (851)
|.+.|++++|++.|+++++.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 44444444444444444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=8.7e-08 Score=86.37 Aligned_cols=117 Identities=17% Similarity=0.188 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTK 219 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~ 219 (851)
..+..++..+...|++++|++.|++++.... .+...|..++.+|...|++++|++.|+++++..+. +..+|..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~ 88 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNP--ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA--YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc--CHHHHHHHHH
Confidence 4455556666666666666666666655432 24555666666666666666666666666665544 4556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038852 220 GFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGN 261 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~ 261 (851)
+|...|++++|+++|+++++.... +...+..++.++.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 666666666666666666665443 55555556666655554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-07 Score=84.42 Aligned_cols=97 Identities=21% Similarity=0.418 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTK 219 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~ 219 (851)
..|..++..+...|++++|+++|+++++... .+..++..++.++...|++++|+.+|+++++..+. +..++..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~ 85 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHHHHHHHH
Confidence 3444444444444444444444444443321 23344444444444444444444444444444322 3344444444
Q ss_pred HHHHcCCHHHHHHHHHHHHhc
Q 038852 220 GFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~ 240 (851)
+|...|++++|+++|+++++.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 444444444444444444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=7.9e-08 Score=86.68 Aligned_cols=120 Identities=9% Similarity=0.064 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
+...|..++..+...|++++|++.|+++++..+. +..+|..++.++...|++++|+++|+++++.... +..++..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA--NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHH
Confidence 3456777888888888898899888888887655 6778888888888888888888888888887554 677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKD 297 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~ 297 (851)
.+|...|++++|+++|+++++.... +...+..+..++.+.|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 8888888888888888888776544 455666666666655543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.1e-08 Score=105.28 Aligned_cols=100 Identities=11% Similarity=0.015 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHH
Q 038852 210 SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFME 289 (851)
Q Consensus 210 ~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~ 289 (851)
+...+..++..+...|++++|+++|+++++.... +...|..++.+|.+.|++++|++.|+++++.+.. +...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 5567888888888999999999999998887655 7888888899999999999999999888877654 5667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhc
Q 038852 290 WWFNQGKDKEAMQSYKSLMERN 311 (851)
Q Consensus 290 ~~~~~g~~~~A~~l~~~~~~~~ 311 (851)
+|...|++++|++.|+++++.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 7888888888888887777654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.83 E-value=6.6e-08 Score=104.31 Aligned_cols=134 Identities=8% Similarity=0.066 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-------------IVSYNNLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-------------~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
+...|..+...|.+.|++++|+..|+++++......+ ..+|..++.+|.+.|++++|+..|+++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567778888888888999999888888776432211 467777888888888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 038852 205 APVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKA-NELFDELKQ 274 (851)
Q Consensus 205 ~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A-~~~~~~~~~ 274 (851)
++. +..+|..++.+|...|++++|+..|+++++.... +..++..+..++.+.|++++| ..+|++|..
T Consensus 226 ~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 DSN--NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 6777788888888888888888888888777555 667777777777777777777 445555543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.7e-07 Score=83.66 Aligned_cols=116 Identities=17% Similarity=0.313 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLIS 254 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~ 254 (851)
..+|..++.++...|++++|+++|+++++..+. +..++..++.++...|++++|+.+|+++++.... +..++..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHH
Confidence 566777888888888888888888888887654 6778888888888888888888888888877544 6778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHc
Q 038852 255 GFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQ 294 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~ 294 (851)
+|...|++++|+.+|+++++.... +...+..+..++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhc
Confidence 888888888888888888876554 555666666666544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.81 E-value=7.7e-09 Score=97.36 Aligned_cols=101 Identities=12% Similarity=0.037 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHH
Q 038852 210 SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFME 289 (851)
Q Consensus 210 ~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~ 289 (851)
+...|..++.++.+.|++++|+++|+++++..+. +...|..++.+|...|++++|++.|+++++.+.. +...+..++.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 5567888888999999999999999999988766 8888999999999999999999999999888766 6778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcC
Q 038852 290 WWFNQGKDKEAMQSYKSLMERNF 312 (851)
Q Consensus 290 ~~~~~g~~~~A~~l~~~~~~~~~ 312 (851)
+|.+.|++++|++.|+++++...
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Confidence 88888888888888888887754
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=7.6e-08 Score=87.34 Aligned_cols=118 Identities=9% Similarity=0.083 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
+...|..++..+.+.|++++|+++|+++++... .+..+|..++.+|...|++++|+++|+++++..+. +..+|..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP--KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT--FIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--chHHHHHH
Confidence 455667777777777777777777777765432 35667777777777777888888888777777654 66677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG 260 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g 260 (851)
+.++...|++++|++.|+++++.... +...+..+..++.+.|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 77777888888888888777776443 4456666666665554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.1e-08 Score=94.08 Aligned_cols=98 Identities=12% Similarity=0.068 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLIS 254 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~ 254 (851)
...+..++..+...|++++|+..|+++++.++. +...|..++.+|...|++++|++.|+++++.... +..++..++.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY--DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 445566666666677777777777777666555 6666666777777777777777777777666544 5566666677
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 038852 255 GFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~ 275 (851)
+|...|++++|++.|+++++.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777666654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.79 E-value=9.5e-08 Score=103.06 Aligned_cols=153 Identities=11% Similarity=0.106 Sum_probs=113.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-------------HHHHHHHH
Q 038852 152 AKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-------------SNTYRHLT 218 (851)
Q Consensus 152 ~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-------------~~~~~~Li 218 (851)
.+++++|++.|+..++... .+...|..++.+|.+.|++++|+..|+++++..+...+ ..+|..++
T Consensus 126 L~~~~~A~~~~~~a~~~~p--~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKL--EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEEECCCCGGGCCHHHHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 3456666666655433210 14567888999999999999999999999988765221 57788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHH
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDK 298 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 298 (851)
.+|.+.|++++|++.|+++++.... +..+|..++.+|...|++++|+..|+++++.... +..++..+..++.+.|+++
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888887655 7778888888888888888888888888877655 5667777777777777777
Q ss_pred HH-HHHHHHHH
Q 038852 299 EA-MQSYKSLM 308 (851)
Q Consensus 299 ~A-~~l~~~~~ 308 (851)
+| .++|+.|.
T Consensus 282 ~a~~~~~~~~~ 292 (336)
T 1p5q_A 282 AREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76 34555544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.9e-08 Score=94.30 Aligned_cols=122 Identities=7% Similarity=0.104 Sum_probs=61.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HHHcCCh-
Q 038852 114 LIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT-YCDEGKV- 191 (851)
Q Consensus 114 l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~-~~~~g~~- 191 (851)
+...|++++|+..+++++... ..+...|..++.+|...|++++|+..|+++++..+ .+...|..++.+ |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--ENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCCcc
Confidence 445555555555555555443 23445555555555555555555555555544322 234445555555 4455555
Q ss_pred -HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 192 -DEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 192 -~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
++|+.+|+++++.++. +..+|..++.+|...|++++|+..|+++++.
T Consensus 97 ~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSN--EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 5555555555555443 4445555555555555555555555555554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-07 Score=85.06 Aligned_cols=96 Identities=11% Similarity=0.153 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
.|..++..+.+.|++++|++.|+++++.++. +..+|..++.+|.+.|++++|++.|+++++.... +..+|..++.+|
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE--DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 3445555555555555555555555555444 4555555555555555555555555555555433 455555555555
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 038852 257 LNLGNLEKANELFDELKQR 275 (851)
Q Consensus 257 ~~~g~~~~A~~~~~~~~~~ 275 (851)
...|++++|++.|+++++.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 5555555555555555544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-08 Score=99.69 Aligned_cols=132 Identities=14% Similarity=0.109 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN--------------IVSYNNLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd--------------~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
...+..+...+.+.|++++|+++|+++++.....++ ..+|..++.+|...|++++|+..|+++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345667777788888888888888888764332221 256777777777777777777777777777
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 038852 205 APVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKAN-ELFDELK 273 (851)
Q Consensus 205 ~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~-~~~~~~~ 273 (851)
++. +..+|..++.+|...|++++|++.|+++++.... +..++..+..++...++.+++. ..|..+.
T Consensus 118 ~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 118 DKN--NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp STT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC----------
T ss_pred Ccc--cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 654 6677777777777777777777777777776544 6666777777776666666555 3444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-08 Score=100.63 Aligned_cols=152 Identities=9% Similarity=0.055 Sum_probs=90.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--------------H
Q 038852 146 IAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS--------------S 211 (851)
Q Consensus 146 i~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~--------------~ 211 (851)
+......|++++|.+.++..... .......+..++..+...|++++|+++|+++++..+..++ .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 33344566777776666533221 0013456778888888899999999999998886554331 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHH
Q 038852 212 NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWW 291 (851)
Q Consensus 212 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~ 291 (851)
.+|..++.+|...|++++|+..|+++++.... +..++..++.+|...|++++|++.|+++++.... +..++..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 56666777777777777777777777766444 5666667777777777777777777776665443 445555555555
Q ss_pred HHcCCHHHHH
Q 038852 292 FNQGKDKEAM 301 (851)
Q Consensus 292 ~~~g~~~~A~ 301 (851)
...++.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 5555444444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.9e-07 Score=84.36 Aligned_cols=99 Identities=12% Similarity=0.153 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
...|..++..+.+.|++++|++.|+++++..+ .+...|..++.+|.+.|++++|++.|+++++.++. +..+|..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--FVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHH
Confidence 35677788888899999999999999887643 46788899999999999999999999999998766 788899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g 241 (851)
.++...|++++|++.|+++++..
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999988875
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.3e-08 Score=94.70 Aligned_cols=123 Identities=11% Similarity=0.118 Sum_probs=72.3
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCH-
Q 038852 150 YRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKG-FVDAGRI- 227 (851)
Q Consensus 150 ~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~-~~~~g~~- 227 (851)
...|++++|++.|+++++... .+...|..++.+|...|++++|+..|+++++.++. +...|..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP--QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--NAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhcCCcc
Confidence 345666666666666655432 34556666666666666666666666666665544 55566666666 5566666
Q ss_pred -HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038852 228 -GEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCL 277 (851)
Q Consensus 228 -~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~ 277 (851)
++|+.+|+++++.... +..++..++.+|...|++++|+..|+++++...
T Consensus 97 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 6666666666665443 555666666666666666666666666665543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.6e-08 Score=91.74 Aligned_cols=113 Identities=12% Similarity=0.013 Sum_probs=92.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 196 NVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 196 ~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
..|+++++.++. +...+..++..+...|++++|+.+|+++++.... +...|..++.+|...|++++|++.|+++++.
T Consensus 8 ~~~~~al~~~p~--~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 8 GTIAMLNEISSD--TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CSHHHHTTCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345566554433 5667888888999999999999999999988666 8888889999999999999999999999887
Q ss_pred CCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 038852 276 CLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF 312 (851)
Q Consensus 276 ~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 312 (851)
+.. +...+..++.+|...|++++|++.|+++++...
T Consensus 85 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 85 DIX-EPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp STT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 665 677788888888889999999998888887654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.8e-07 Score=89.09 Aligned_cols=98 Identities=9% Similarity=0.103 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLIS 254 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~ 254 (851)
...|..++..|...|++++|+++|+++++.++. +...|..++.+|...|++++|++.|+++++.... +..+|..++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA--NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 334455555555555555555555555555443 4455555555555555555555555555555433 4555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 038852 255 GFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~ 275 (851)
+|...|++++|++.|+++++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 555555555555555555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.9e-07 Score=86.60 Aligned_cols=97 Identities=14% Similarity=0.101 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISG 255 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~ 255 (851)
..+..++..+...|++++|+.+|+++++.++. +...|..++.+|...|++++|+..|+++++.... +...+..++.+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY--DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 34455555566666666666666666665544 5556666666666666666666666666665444 45555666666
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 038852 256 FLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 256 ~~~~g~~~~A~~~~~~~~~~ 275 (851)
|...|++++|++.|+++++.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666665554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=5.7e-07 Score=79.27 Aligned_cols=96 Identities=14% Similarity=0.187 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
.|..++..+...|++++|+.+|+++++..+. +...|..++.++...|++++|++.|+++++.... +...+..++.+|
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 3444444445555555555555555444333 4444445555555555555555555555444332 344444455555
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 038852 257 LNLGNLEKANELFDELKQR 275 (851)
Q Consensus 257 ~~~g~~~~A~~~~~~~~~~ 275 (851)
...|++++|.++|+++++.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5555555555555544443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=9.7e-07 Score=77.75 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
...+..++..+...|++++|+.+|+++++... .+...|..++.+|...|++++|+..++++++..+. +...|..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD--WGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc--cHHHHHHHH
Confidence 45677788888889999999999998877543 36778888888999999999999999999888765 777888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISG 255 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~ 255 (851)
.++...|++++|+++|+++++.+.. +...+..+..+
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 115 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQNM 115 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHh
Confidence 9999999999999999999887654 55666555544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.5e-07 Score=87.08 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
+...|..+...+.+.|++++|+++|+++++... .+...|..++.+|...|++++|+..|+++++.++. +..+|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP--ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK--YSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHH
Confidence 456677788888889999999999998887643 36778888999999999999999999999988766 78888999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLG 243 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~ 243 (851)
+.+|...|++++|++.|+++++....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999998887544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=5.5e-07 Score=82.35 Aligned_cols=99 Identities=13% Similarity=0.045 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
+...|..++..+...|++++|+..|+++++.++. +..+|..++.+|...|++++|+..|+++++.... +...|..++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 4555666666666666666666666666666544 5556666666666666666666666666665444 556666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 038852 254 SGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
.+|...|++++|+..|+++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666666666666666543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2.5e-07 Score=85.88 Aligned_cols=101 Identities=13% Similarity=0.054 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
+...+..+...+.+.|++++|+++|++++...+ .+...|..++.+|...|++++|+..|+++++.++. +...|..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 92 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH--YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN--EPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CcHHHHHH
Confidence 345566777788899999999999999887643 46778888999999999999999999999998876 66788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~ 242 (851)
+.+|...|++++|++.|+++++...
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999887643
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.1e-07 Score=83.53 Aligned_cols=98 Identities=14% Similarity=0.209 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CC----HHHH
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG--AD----SLVY 249 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~--pd----~~~~ 249 (851)
.++..|+..|.+.|++++|++.|+++++.+|. +..+|..++.+|...|++++|++.|+++++.... .+ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~--~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS--NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 34555666666666666666666666666554 5556666666666666666666666666553211 01 1244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 250 NNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 250 ~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
..++.++...|++++|++.|++.++.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555555566666666665555543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.62 E-value=7.3e-07 Score=80.98 Aligned_cols=107 Identities=19% Similarity=0.267 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-----HHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-----SNTY 214 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-----~~~~ 214 (851)
..+..|+..+.+.|++++|++.|+++++..+ .+..+|+.++.+|...|++++|++.|+++++.++.... ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p--~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP--SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4677788899999999999999999987643 46788899999999999999999999998876543222 2467
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 038852 215 RHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYN 250 (851)
Q Consensus 215 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~ 250 (851)
..++.++...|++++|++.|++.++.. +|..+..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEF--RDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--CCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--cCHHHHH
Confidence 788889999999999999999988753 3554443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=4.8e-07 Score=81.46 Aligned_cols=92 Identities=15% Similarity=0.061 Sum_probs=46.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
.++..+.+.|++++|+..|+++++.++. +...|..++.++...|++++|+..|+++++.... +...+..++.+|...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 3444445555555555555555554443 4445555555555555555555555555554433 444455555555555
Q ss_pred CCHHHHHHHHHHHHh
Q 038852 260 GNLEKANELFDELKQ 274 (851)
Q Consensus 260 g~~~~A~~~~~~~~~ 274 (851)
|++++|++.|+++++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.6e-06 Score=80.08 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN----IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNT 213 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd----~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~ 213 (851)
+...+..++..+...|++++|+++|+++++.. ++ ..+|..++.+|...|++++|++.|+++++..+. +...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG--DVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--CHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--CHHH
Confidence 44555556666666666666666666665432 33 455666666666677777777777766666544 5566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 214 YRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 214 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
|..++.+|...|++++|+++|+++++.... +..++..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHH
Confidence 666666666777777777777666665433 444444333
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.56 E-value=7.3e-07 Score=80.25 Aligned_cols=97 Identities=10% Similarity=0.193 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CC----HHHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG--AD----SLVYN 250 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~--pd----~~~~~ 250 (851)
.|..++..+...|++++|+.+|+++++..+. +..++..++.+|...|++++|+.+|+++++.... .+ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT--NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444445555555555555555555554433 4444555555555555555555555555443211 01 34444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 251 NLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 251 ~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
.++.+|...|++++|++.|+++++.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4555555555555555555554443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.2e-06 Score=80.17 Aligned_cols=101 Identities=17% Similarity=0.178 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 137 PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRH 216 (851)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~ 216 (851)
.+...|..++..+...|++++|+..|+++++... .+...|..++.+|...|++++|+..|+++++.++. +..+|..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~ 82 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SVKAHFF 82 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch--hHHHHHH
Confidence 4677888899999999999999999999987643 46788999999999999999999999999998766 7889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC
Q 038852 217 LTKGFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 217 Li~~~~~~g~~~~A~~l~~~m~~~g 241 (851)
++.+|...|++++|++.|+++++..
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 9999999999999999999988753
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.54 E-value=8e-07 Score=83.16 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----H
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN----IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS----S 211 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd----~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~----~ 211 (851)
.++..+...+...|++++|++.|+++++......+ ..++..++.+|...|++++|++.|+++++......+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34556666666677777777777666542111111 134555666666666666666666665543211111 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 212 NTYRHLTKGFVDAGRIGEAVDLLRDML 238 (851)
Q Consensus 212 ~~~~~Li~~~~~~g~~~~A~~l~~~m~ 238 (851)
.++..++.++...|++++|+++|++++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344445555555555555555555544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-06 Score=80.62 Aligned_cols=103 Identities=10% Similarity=0.053 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 038852 173 PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS---SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVY 249 (851)
Q Consensus 173 pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~---~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 249 (851)
.+...+..++..+...|++++|+++|+++++..+. + ..+|..++.+|...|++++|++.|+++++.... +...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT--PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc--chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 35677888888888888888898888888875432 2 567888888888888888888888888877554 67778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 038852 250 NNLISGFLNLGNLEKANELFDELKQRCLV 278 (851)
Q Consensus 250 ~~Li~~~~~~g~~~~A~~~~~~~~~~~~~ 278 (851)
..++.+|...|++++|+.+|+++++....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 88888888888888888888888776543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.53 E-value=8.2e-07 Score=100.03 Aligned_cols=123 Identities=7% Similarity=0.040 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-------------IVSYNNLINTYCDEGKVDEGMNVFRRIIETAP 206 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-------------~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~ 206 (851)
..|+.+...|.+.|++++|+..|+++++.....++ ..+|..++.+|.+.|++++|+..|+++++.++
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 34555555555666666666666655543221111 34444455555555555555555555554443
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038852 207 VGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKA 265 (851)
Q Consensus 207 ~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 265 (851)
. +..+|..++.+|...|++++|+..|+++++.... +..++..+..++.+.++++++
T Consensus 349 ~--~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 349 A--NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred c--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 3 4444555555555555555555555555444332 334444444444444444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=2.5e-06 Score=98.34 Aligned_cols=172 Identities=9% Similarity=0.015 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 038852 156 DDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK----------VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG 225 (851)
Q Consensus 156 ~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~----------~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g 225 (851)
++|++++++++.... .+..+|+....++...|+ +++++++++++++.++. +..+|+....++.+.+
T Consensus 46 eeal~~~~~~l~~nP--~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK--~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 46 ESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK--SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHCc--hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcc
Confidence 355666666655432 234455555555555555 56666666666665544 5555665555555555
Q ss_pred --CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHH
Q 038852 226 --RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG-NLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQ 302 (851)
Q Consensus 226 --~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g-~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 302 (851)
++++++++++++++.+.+ |..+|+....++.+.| .++++++.++++++.++. |.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~--------------------- 178 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NY--------------------- 178 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CH---------------------
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-Cc---------------------
Confidence 446666666666665544 5555655555555555 555555555555554443 33
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH
Q 038852 303 SYKSLMERNFRMTPATCNTLLEVLLKH--------------EKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK 368 (851)
Q Consensus 303 l~~~~~~~~~~~~~~~~~~Li~~~~~~--------------g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~ 368 (851)
..|+....++.+. +.++++++++++++.. .|+ +..+|+.+..++.+
T Consensus 179 --------------saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~----~~saW~y~~~ll~~ 238 (567)
T 1dce_A 179 --------------SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPN----DQSAWFYHRWLLGR 238 (567)
T ss_dssp --------------HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--CSS----CSHHHHHHHHHHSC
T ss_pred --------------cHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--CCC----CccHHHHHHHHHhc
Confidence 4444444444332 4578899999988874 344 78889988888888
Q ss_pred cCChHH
Q 038852 369 HGKFSE 374 (851)
Q Consensus 369 ~g~~~~ 374 (851)
.++.++
T Consensus 239 ~~~~~~ 244 (567)
T 1dce_A 239 AEPHDV 244 (567)
T ss_dssp CCCCSC
T ss_pred CCCccc
Confidence 777554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.51 E-value=6.4e-07 Score=83.85 Aligned_cols=142 Identities=17% Similarity=0.148 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHH
Q 038852 212 NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG-ADS----LVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNAT 286 (851)
Q Consensus 212 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~----~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~ 286 (851)
.++..++.+|...|++++|++.|+++++.... .+. .++..++.+|...|++++|++.|+++++.....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------- 82 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL------- 82 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-------
Confidence 35566666666666666666666666543111 011 244455555555555555555555544321000
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHH
Q 038852 287 FMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNEC 366 (851)
Q Consensus 287 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~ 366 (851)
++. .....++..++.++...|++++|+++++++++.............++..++.+|
T Consensus 83 --------~~~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 83 --------KDR---------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp --------TCH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------CCc---------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Confidence 000 000234555666777777777777777766542111000000234556666666
Q ss_pred HHcCChHHHHHHHHHhc
Q 038852 367 FKHGKFSEAIETFKKAG 383 (851)
Q Consensus 367 ~~~g~~~~A~~~~~~~~ 383 (851)
...|++++|+++|+++.
T Consensus 140 ~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHH
Confidence 67777777777666653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=9.9e-07 Score=79.33 Aligned_cols=92 Identities=13% Similarity=0.073 Sum_probs=48.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 038852 145 IIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA 224 (851)
Q Consensus 145 li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~ 224 (851)
++..+.+.|++++|+..|+++++..+ .+...|..++.++...|++++|+..|+++++.++. +..+|..++.+|...
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc
Confidence 34444455555555555555544322 24445555555555555555555555555555544 445555555555555
Q ss_pred CCHHHHHHHHHHHHhc
Q 038852 225 GRIGEAVDLLRDMLSR 240 (851)
Q Consensus 225 g~~~~A~~l~~~m~~~ 240 (851)
|++++|++.|+++++.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 5555555555555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-07 Score=106.94 Aligned_cols=123 Identities=14% Similarity=0.139 Sum_probs=78.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038852 143 NAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFV 222 (851)
Q Consensus 143 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~ 222 (851)
..++..+.+.|++++|++.|+++++... .+..+|..++.+|.+.|++++|++.|+++++.++. +..+|..++.+|.
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~~ 85 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YIKGYYRRAASNM 85 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Confidence 3344455566777777777777766532 34667777777777777777777777777776554 6667777777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 038852 223 DAGRIGEAVDLLRDMLSRQLGADSLVYNNLISG--FLNLGNLEKANELFD 270 (851)
Q Consensus 223 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~--~~~~g~~~~A~~~~~ 270 (851)
..|++++|++.|+++++.... +...+..+..+ +.+.|++++|+++++
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777777777766443 34445555544 666677777777766
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-06 Score=78.54 Aligned_cols=114 Identities=12% Similarity=0.240 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-CC----HHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVG-PS----SNT 213 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~-p~----~~~ 213 (851)
...|..++..+...|++++|+.+|+++++... .+..++..++.+|...|++++|+.+|+++++..+.. .+ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 34677788888888999999999988877542 367778888888888899999999998888765431 12 667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 214 YRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 214 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
|..++.+|...|++++|++.|+++++.. ++...+..+..+.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 8888888999999999999999888864 3555555554443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=5.4e-06 Score=95.62 Aligned_cols=199 Identities=8% Similarity=0.010 Sum_probs=152.3
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHcCCCCCCHH
Q 038852 108 HNRVQSLIRAGDL-DAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKR----------YDDAVALFKYFFDQADIVPNIV 176 (851)
Q Consensus 108 ~~ll~~l~~~g~~-~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~~~~~~~~~pd~~ 176 (851)
...+.++.+.|++ ++|++.+++++... ..+..+|+.-..++.+.|+ +++++++++++++... .+..
T Consensus 32 ~~~~~~~~~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--K~y~ 108 (567)
T 1dce_A 32 TQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYG 108 (567)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC--CCHH
Confidence 3445566666665 56799999999776 3467789988888888887 9999999999998654 5788
Q ss_pred HHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 177 SYNNLINTYCDEG--KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG-RIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 177 ~~~~Li~~~~~~g--~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
+|+....++.+.+ ++++++++++++++.++. |..+|+....++.+.| .++++++.++++++..+. |..+|+...
T Consensus 109 aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~--N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~ 185 (567)
T 1dce_A 109 TWHHRCWLLSRLPEPNWARELELCARFLEADER--NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRS 185 (567)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHhhccc--cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHH
Confidence 8999999999999 779999999999999877 9999999999999999 999999999999999877 899999988
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKE 333 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~ 333 (851)
.++.+.++..++ +.. . -...+.++++++++++++..++. +...|+.+...+.+.++.+
T Consensus 186 ~ll~~l~~~~~~----------~~~-~----------~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 186 CLLPQLHPQPDS----------GPQ-G----------RLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHHHHHSCCCCS----------SSC-C----------SSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred HHHHhhcccccc----------ccc-c----------cccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 887765332100 000 0 00113456777777777776653 4567887777777766644
Q ss_pred H
Q 038852 334 E 334 (851)
Q Consensus 334 ~ 334 (851)
+
T Consensus 244 ~ 244 (567)
T 1dce_A 244 V 244 (567)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-06 Score=83.28 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038852 211 SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCL 277 (851)
Q Consensus 211 ~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~ 277 (851)
..+|..++.+|.+.|++++|+..++++++.+.. +..+|..++.+|...|++++|+..|+++++.+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 345566666666666666666666666665444 555666666666666666666666666665543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.1e-06 Score=74.88 Aligned_cols=96 Identities=18% Similarity=0.202 Sum_probs=40.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 038852 145 IIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-SNTYRHLTKGFV 222 (851)
Q Consensus 145 li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-~~~~~~Li~~~~ 222 (851)
++..+.+.|++++|++.|+++++..+..+. ...+..++.+|...|++++|+..|+++++..+..+. ..++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 333444445555555555444443221110 023444444444444444444444444444333111 233444444444
Q ss_pred HcCCHHHHHHHHHHHHhc
Q 038852 223 DAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 223 ~~g~~~~A~~l~~~m~~~ 240 (851)
..|++++|++.|+++++.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 444444444444444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.3e-06 Score=96.33 Aligned_cols=145 Identities=10% Similarity=0.075 Sum_probs=97.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-------------HHHHHHHHH
Q 038852 153 KRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-------------SNTYRHLTK 219 (851)
Q Consensus 153 g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-------------~~~~~~Li~ 219 (851)
+++++|++.|+..++.. ..+...|..++..|.+.|++++|+..|+++++..+..++ ..+|..++.
T Consensus 248 ~~~~~A~~~~~~~~~~~--~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK--LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEECCCCGGGSCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34556665554433211 013557888888999999999999999999887655321 567777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHH
Q 038852 220 GFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKE 299 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~ 299 (851)
+|.+.|++++|+..|+++++.... +..+|..++.+|...|++++|+..|+++++.... +..++..+..++.+.+++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777776554 6677777777777777777777777777766544 44556666666666665555
Q ss_pred HH
Q 038852 300 AM 301 (851)
Q Consensus 300 A~ 301 (851)
+.
T Consensus 404 a~ 405 (457)
T 1kt0_A 404 RD 405 (457)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-06 Score=82.52 Aligned_cols=102 Identities=16% Similarity=0.219 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHc--------CC--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQ--------AD--------IVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIE 203 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~--------~~--------~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~ 203 (851)
..+...+..+.+.|++++|+..|+++++. .. ...+..+|..++.+|.+.|++++|+..++++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34556666677777777777777776653 00 012346788999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 038852 204 TAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG 243 (851)
Q Consensus 204 ~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~ 243 (851)
.++. +..+|..++.+|...|++++|+..|+++++....
T Consensus 92 ~~p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 92 REET--NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred cCCc--chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 8876 8889999999999999999999999999987544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.44 E-value=7e-06 Score=73.93 Aligned_cols=99 Identities=15% Similarity=0.071 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPT--VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLIN 183 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~ 183 (851)
++.+...+...|++++|+..|++++....... ...+..++.++.+.|++++|+..|+++++.....+. ..++..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34445555555555555555555554332111 034444555555555555555555555443221111 334455555
Q ss_pred HHHHcCChHHHHHHHHHHHHhC
Q 038852 184 TYCDEGKVDEGMNVFRRIIETA 205 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~~~~ 205 (851)
+|...|++++|+..|+++++..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 5555555555555555555544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.43 E-value=7.9e-07 Score=100.69 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=88.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 038852 111 VQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK 190 (851)
Q Consensus 111 l~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~ 190 (851)
...+.+.|++++|+..+++++... ..+..+|..+..+|.+.|++++|++.|+++++... .+..+|..++.+|...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCC
Confidence 345777888888888888888764 34577888888888888888888888888877532 356778888888888888
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKG--FVDAGRIGEAVDLLR 235 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~--~~~~g~~~~A~~l~~ 235 (851)
+++|++.|+++++.++...+ ++..+..+ +.+.|++++|+++++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKD--AKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTT--HHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888888766444 45555554 777888888888887
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.7e-06 Score=75.36 Aligned_cols=99 Identities=18% Similarity=0.157 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHH
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG-ADSLVYNNLIS 254 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~~~~~Li~ 254 (851)
..|..++.++...|++++|+..|+++++..+. +..+|..++.++...|++++|+++|+++++.... .+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE--ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34555666666666666666666666666544 5556666666666666666666666666665321 03556666666
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcC
Q 038852 255 GFLNL-GNLEKANELFDELKQRC 276 (851)
Q Consensus 255 ~~~~~-g~~~~A~~~~~~~~~~~ 276 (851)
+|.+. |++++|++.|++++...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 66666 66666666666666543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.40 E-value=2e-06 Score=74.93 Aligned_cols=102 Identities=10% Similarity=0.036 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
...|..++..+...|++++|+..|+++++... .+..+|..++.+|...|++++|++.|+++++..+...+..+|..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP--EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34455666667777777777777777766532 3556677777777777777777777777777653322466777777
Q ss_pred HHHHHc-CCHHHHHHHHHHHHhcCC
Q 038852 219 KGFVDA-GRIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 219 ~~~~~~-g~~~~A~~l~~~m~~~g~ 242 (851)
.++... |++++|++.|+++++...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhccc
Confidence 777777 777777777777776543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.39 E-value=2.3e-06 Score=93.31 Aligned_cols=120 Identities=13% Similarity=0.157 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh----------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIET----------------APVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS 239 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~----------------~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 239 (851)
..|..++..|.+.|++++|++.|+++++. .+. +..+|..++.+|.+.|++++|++.++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV--ALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHH--HHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 34667777788888888888888877762 111 334555555555555555555555555555
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHH
Q 038852 240 RQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKE 299 (851)
Q Consensus 240 ~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~ 299 (851)
.... +..+|..++.+|...|++++|++.|+++++.... +..++..+..++.+.++.++
T Consensus 302 ~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 302 IDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp TCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred hCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 4433 4555555555555555555555555555554433 33344444444444443333
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.38 E-value=4.4e-06 Score=77.91 Aligned_cols=97 Identities=13% Similarity=0.158 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-----C-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHh------
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVP-----N-----IVSYNNLINTYCDEGKVDEGMNVFRRIIET------ 204 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~p-----d-----~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~------ 204 (851)
.+..++..+.+.|++++|++.|+++++.....+ + ...|+.+..++.+.|++++|+..|+++++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 445556666667777777777777665433211 1 125555555555555555555555555554
Q ss_pred -CCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHh
Q 038852 205 -APVGPSSNTY----RHLTKGFVDAGRIGEAVDLLRDMLS 239 (851)
Q Consensus 205 -~~~~p~~~~~----~~Li~~~~~~g~~~~A~~l~~~m~~ 239 (851)
++. +...| ..++.++...|++++|+..|+++++
T Consensus 93 ~~pd--~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQD--EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTST--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCc--hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 333 33444 4444444455555555555544443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2.6e-06 Score=92.92 Aligned_cols=125 Identities=8% Similarity=0.113 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-------------C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQAD-------------I-VPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETA 205 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-------------~-~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~ 205 (851)
..|..+...+.+.|++++|++.|+++++... . ..+..+|..++.+|.+.|++++|++.++++++.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3567788888889999999999988876100 1 1245688999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038852 206 PVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANE 267 (851)
Q Consensus 206 ~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~ 267 (851)
+. +..+|..++.+|...|++++|++.|+++++.... +...+..+..++...++.+++.+
T Consensus 304 p~--~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PS--NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch--hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 7889999999999999999999999999998665 77888888888888887777654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.36 E-value=4.7e-06 Score=77.71 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-----CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGP-----SS-----NTYRHLTKGFVDAGRIGEAVDLLRDMLSR---- 240 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p-----~~-----~~~~~Li~~~~~~g~~~~A~~l~~~m~~~---- 240 (851)
...+..++..+...|++++|++.|+++++.++..+ +. ..|..+..++.+.|++++|+..|+++++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 34567788888999999999999999999876532 22 27888888888888888888888888776
Q ss_pred ---CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 241 ---QLGADSLVY----NNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 241 ---g~~pd~~~~----~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
... +...| ..++.++...|++++|+..|+++++.
T Consensus 91 ~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 91 GELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 443 45566 77777777777777777777777654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-06 Score=94.90 Aligned_cols=149 Identities=9% Similarity=0.106 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTK 219 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~ 219 (851)
..+..+...+.+.|++++|+..|+++++.. ++... +...|+++++...+. ..+|..++.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345667777777888888888888876642 22221 112222222222111 014555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHH-HHHcCCHH
Q 038852 220 GFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEW-WFNQGKDK 298 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~-~~~~g~~~ 298 (851)
+|.+.|++++|+..|+++++.... +..+|..++.+|...|++++|+..|+++++.... +..++..+..+ ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666555433 5555556666666666666666666665554333 33344444433 22334455
Q ss_pred HHHHHHHHHHHhc
Q 038852 299 EAMQSYKSLMERN 311 (851)
Q Consensus 299 ~A~~l~~~~~~~~ 311 (851)
++.++|..++...
T Consensus 317 ~a~~~~~~~l~~~ 329 (338)
T 2if4_A 317 KQKEMYKGIFKGK 329 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHhhCCC
Confidence 5555666555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.6e-06 Score=77.27 Aligned_cols=90 Identities=14% Similarity=0.122 Sum_probs=59.8
Q ss_pred cCChhHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038852 152 AKRYDDAVALFKYFFDQADI-VPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEA 230 (851)
Q Consensus 152 ~g~~~~A~~l~~~~~~~~~~-~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A 230 (851)
.|++++|+..|+++++.... ..+..+|..++.+|...|++++|++.|+++++.++. +..++..++.+|...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN--HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCCHHHH
Confidence 56777777777777653100 123456777777777777777777777777777665 566777777777777777777
Q ss_pred HHHHHHHHhcCCC
Q 038852 231 VDLLRDMLSRQLG 243 (851)
Q Consensus 231 ~~l~~~m~~~g~~ 243 (851)
++.|+++++....
T Consensus 81 ~~~~~~al~~~p~ 93 (117)
T 3k9i_A 81 VELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCC
Confidence 7777777766433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.8e-06 Score=93.14 Aligned_cols=150 Identities=10% Similarity=0.024 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLIS 254 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~ 254 (851)
...|..++..|.+.|++++|+..|+++++..+. .. .+...++++++...+. ..+|..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~---~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD---DF-------MFQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH---HH-------HHTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc---ch-------hhhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 345777888888999999999999998886532 11 1223344444443321 137889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHhCCCHH
Q 038852 255 GFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEV-LLKHEKKE 333 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~-~~~~g~~~ 333 (851)
+|.+.|++++|+..|+++++.+.. +...+..++.+|...|++++|++.|+++++.+.. +..++..|..+ ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988765 7889999999999999999999999999877643 34556656655 34456778
Q ss_pred HHHHHHHHHHHcC
Q 038852 334 EAQALFEQMLDNH 346 (851)
Q Consensus 334 ~A~~l~~~m~~~~ 346 (851)
++..+|.+|+...
T Consensus 317 ~a~~~~~~~l~~~ 329 (338)
T 2if4_A 317 KQKEMYKGIFKGK 329 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHhhCCC
Confidence 8899999988643
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.8e-06 Score=76.85 Aligned_cols=93 Identities=13% Similarity=0.043 Sum_probs=75.1
Q ss_pred HcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHH
Q 038852 116 RAGDLDAASYLARQAVFSR--IRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDE 193 (851)
Q Consensus 116 ~~g~~~~A~~l~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~ 193 (851)
..|++++|+..|++++..+ -..+..++..++.+|.+.|++++|++.|+++++..+ .+..++..++.+|...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--NHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCHHH
Confidence 3588999999999998653 133567889999999999999999999999988644 357889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCC
Q 038852 194 GMNVFRRIIETAPVGPS 210 (851)
Q Consensus 194 A~~l~~~~~~~~~~~p~ 210 (851)
|++.|+++++..+..++
T Consensus 80 A~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 80 GVELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHhCCCcHH
Confidence 99999999998766433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.8e-06 Score=74.21 Aligned_cols=94 Identities=14% Similarity=0.183 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC------HH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGAD------SL 247 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd------~~ 247 (851)
+...|..++.++...|++++|++.|+++++.++. +..+|..++.+|...|++++|++.|+++++.... + ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ--NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHH
Confidence 3455667777777777777777777777777655 6667777777777777777777777777766433 3 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 038852 248 VYNNLISGFLNLGNLEKANELFD 270 (851)
Q Consensus 248 ~~~~Li~~~~~~g~~~~A~~~~~ 270 (851)
++..++.++...|+++.|++.|+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 55555666666665555544433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=7e-05 Score=68.82 Aligned_cols=109 Identities=12% Similarity=-0.002 Sum_probs=54.1
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 038852 154 RYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD----AGRIGE 229 (851)
Q Consensus 154 ~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~----~g~~~~ 229 (851)
++++|+++|++..+.. .++. . |..+|...+.+++|+++|+++.+.+ +...+..|..+|.. .+++++
T Consensus 10 d~~~A~~~~~~aa~~g--~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 10 DLKKAIQYYVKACELN--EMFG--C--LSLVSNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHTT--CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred CHHHHHHHHHHHHcCC--CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCccHHH
Confidence 4455555555554321 1121 2 4444444455555555555555443 44455555555555 455555
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhc
Q 038852 230 AVDLLRDMLSRQLGADSLVYNNLISGFLN----LGNLEKANELFDELKQR 275 (851)
Q Consensus 230 A~~l~~~m~~~g~~pd~~~~~~Li~~~~~----~g~~~~A~~~~~~~~~~ 275 (851)
|+++|+++.+.| +...+..|..+|.. .+|+++|+++|++..+.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 555555555543 34445555555555 45555555555555444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.9e-05 Score=68.55 Aligned_cols=80 Identities=18% Similarity=0.236 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 157 DAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRD 236 (851)
Q Consensus 157 ~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~ 236 (851)
+|++.|+++++... .+...|..++.+|...|++++|+..|+++++.++. +..+|..++.+|...|++++|+..|++
T Consensus 3 ~a~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQGT--DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT--YSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45666666655322 34566667777777777777777777777766554 566677777777777777777777776
Q ss_pred HHhc
Q 038852 237 MLSR 240 (851)
Q Consensus 237 m~~~ 240 (851)
+++.
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.01 E-value=5.8e-05 Score=62.90 Aligned_cols=80 Identities=20% Similarity=0.376 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISG 255 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~ 255 (851)
..|..++..+...|++++|+..|+++++..+. +..+|..++.++...|++++|++.|+++++.... +..++..+..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 86 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 34455555555555555555555555555433 4445555555555555555555555555554333 44444444444
Q ss_pred HHh
Q 038852 256 FLN 258 (851)
Q Consensus 256 ~~~ 258 (851)
+.+
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.3e-05 Score=69.14 Aligned_cols=80 Identities=13% Similarity=0.080 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 193 EGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDEL 272 (851)
Q Consensus 193 ~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~ 272 (851)
+|++.|+++++.++. +...|..++.+|...|++++|++.|+++++.... +..+|..++.+|...|++++|+..|+++
T Consensus 3 ~a~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGTD--NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 577888888887765 7788999999999999999999999999988655 7788888999999999999999999888
Q ss_pred Hhc
Q 038852 273 KQR 275 (851)
Q Consensus 273 ~~~ 275 (851)
++.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=9e-05 Score=68.06 Aligned_cols=112 Identities=9% Similarity=-0.025 Sum_probs=97.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCChHH
Q 038852 118 GDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCD----EGKVDE 193 (851)
Q Consensus 118 g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~----~g~~~~ 193 (851)
+++++|+..|+++...+ .++ .+ |...|...+.+++|+++|++..+. -+...++.|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 57889999999999877 333 33 777777888999999999999765 378889999999998 899999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 038852 194 GMNVFRRIIETAPVGPSSNTYRHLTKGFVD----AGRIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 194 A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~~g~ 242 (851)
|+++|+++.+.+ +..++..|..+|.. .+++++|+++|+++.+.|.
T Consensus 80 A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999998875 78899999999999 8999999999999999863
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.7e-05 Score=85.66 Aligned_cols=126 Identities=13% Similarity=0.020 Sum_probs=61.9
Q ss_pred HHHcCChHHHHHHHHHHHHhC-----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC-CC-HHHHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETA-----PVGP-SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR-----QLG-AD-SLVYNN 251 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~-----~~~p-~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~-----g~~-pd-~~~~~~ 251 (851)
+...|++++|+.+++++++.. +..| ...+++.|+.+|...|++++|+.+++++++. |.. |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 344555555555555554431 1111 1234555555555555555555555554431 111 11 234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----CCc-c-chhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038852 252 LISGFLNLGNLEKANELFDELKQR-----CLV-Y-DGVVNATFMEWWFNQGKDKEAMQSYKSLMER 310 (851)
Q Consensus 252 Li~~~~~~g~~~~A~~~~~~~~~~-----~~~-~-d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 310 (851)
|+.+|...|++++|+.+|+++++. |.. | ...+...+..++...+.+++|+.+|.++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666555554431 211 1 1233445555566666666666666666553
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.96 E-value=4.3e-05 Score=85.97 Aligned_cols=129 Identities=8% Similarity=0.048 Sum_probs=96.1
Q ss_pred HHHHcCChhHHHHHHHHHHHcCC--C---CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCCC-HHHHH
Q 038852 148 AMYRAKRYDDAVALFKYFFDQAD--I---VPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIET-----APVGPS-SNTYR 215 (851)
Q Consensus 148 ~~~~~g~~~~A~~l~~~~~~~~~--~---~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~-----~~~~p~-~~~~~ 215 (851)
.+...|++++|+.+++++++... + .|+ ..+++.|+.+|...|++++|+.+++++++. ++..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34568899999999888875311 1 122 457889999999999999999999888754 344444 45788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038852 216 HLTKGFVDAGRIGEAVDLLRDMLSR-----QLG-AD-SLVYNNLISGFLNLGNLEKANELFDELKQRC 276 (851)
Q Consensus 216 ~Li~~~~~~g~~~~A~~l~~~m~~~-----g~~-pd-~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~ 276 (851)
.|+..|...|++++|+.+|+++++. |.. |+ ..+...|..++.+.+.+++|+.+|.++.+..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888752 332 11 2456677788888999999999999887643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=2.7e-05 Score=72.44 Aligned_cols=86 Identities=6% Similarity=0.110 Sum_probs=49.5
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038852 153 KRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK----------VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFV 222 (851)
Q Consensus 153 g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~----------~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~ 222 (851)
+.+++|++.|+++++..+ .+...|+.+..++...++ +++|+..|+++++.+|. +..+|..++.+|.
T Consensus 16 ~~feeA~~~~~~Ai~l~P--~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~--~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNP--LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK--KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHH
Confidence 344444444444443322 233444444444444433 45777777777777666 6667777777777
Q ss_pred HcC-----------CHHHHHHHHHHHHhcCC
Q 038852 223 DAG-----------RIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 223 ~~g-----------~~~~A~~l~~~m~~~g~ 242 (851)
..| ++++|++.|+++++...
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 653 67777777777777643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=2.6e-05 Score=72.57 Aligned_cols=89 Identities=8% Similarity=0.082 Sum_probs=70.1
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRI----------GEAVDLLRDMLSRQLGADSLVYNNLISG 255 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~----------~~A~~l~~~m~~~g~~pd~~~~~~Li~~ 255 (851)
.+.+.+++|++.++++++.+|. +...|+.+..++...+++ ++|+..|+++++.+.. +..+|..++.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~--~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 4557789999999999999887 888999999999888764 5888888888888766 77888888888
Q ss_pred HHhcC-----------CHHHHHHHHHHHHhcCC
Q 038852 256 FLNLG-----------NLEKANELFDELKQRCL 277 (851)
Q Consensus 256 ~~~~g-----------~~~~A~~~~~~~~~~~~ 277 (851)
|...| ++++|++.|+++++.+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 88775 56666666666665543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.90 E-value=8.4e-06 Score=71.09 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 038852 210 SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLV 278 (851)
Q Consensus 210 ~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~ 278 (851)
+...|..++..+...|++++|++.|+++++.... +..+|..++.+|.+.|++++|++.|+++++....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 4557788888888888888888888888887655 7788888888888888888888888888876544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00014 Score=60.39 Aligned_cols=84 Identities=20% Similarity=0.387 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
+...|..+...+...|++++|++.|+++++... .+..+|..++.+|...|++++|++.|+++++.++. +..++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l 83 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CHHHHHHH
Confidence 346778888889999999999999999987643 36778899999999999999999999999998766 77788888
Q ss_pred HHHHHHcC
Q 038852 218 TKGFVDAG 225 (851)
Q Consensus 218 i~~~~~~g 225 (851)
..++...|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 87776544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.76 E-value=3.4e-09 Score=113.32 Aligned_cols=271 Identities=11% Similarity=0.051 Sum_probs=173.1
Q ss_pred CCCccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 038852 102 GPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNL 181 (851)
Q Consensus 102 ~~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~L 181 (851)
+....+..+.++.+..+++.+|++.|-+ ..|...|..+|.+..+.|.+++-++.+..+.+. ..+...=+.|
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteL 122 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETEL 122 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHH
Confidence 3345566777777777777776654321 235556777888777888888888777655322 2233444577
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038852 182 INTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGN 261 (851)
Q Consensus 182 i~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~ 261 (851)
+.+|++.+++.+-.+++ ..||..-...+++-|...|.++.|.-+|..+- -|..|..++.++|+
T Consensus 123 i~ayAk~~rL~elEefl--------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~ 185 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFI--------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGE 185 (624)
T ss_dssp HHHHHTSCSSSTTTSTT--------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSG
T ss_pred HHHHHhhCcHHHHHHHH--------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHH
Confidence 77888888766544333 12344445667777778888877776665432 24456667777788
Q ss_pred HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 038852 262 LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQ 341 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~ 341 (851)
+..|.+.-+++ -+..+|..+..+|...+++..|..+--.++-..- -...|+..|...|.+++.+.+++.
T Consensus 186 yq~AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhad-----eL~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 186 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD-----ELEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp GGSSTTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS-----CCSGGGSSSSTTCCCTTSTTTHHH
T ss_pred HHHHHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhcccHH-----HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 77776543322 2667888888999999998887666544443221 223467788899999999999998
Q ss_pred HHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCC---CCccCHHHHHHHHHHHHhcCCHHHHHH
Q 038852 342 MLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSK---PFAMDVAGYNNIIARYCENEMLEEAEK 416 (851)
Q Consensus 342 m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~d~~~~~~li~~~~~~g~~~~A~~ 416 (851)
.+..... ....|+.|+..|++- +.++.++.++..-...... ...-....|..++-.|++-.++|.|..
T Consensus 255 glglErA------HmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 255 ALGLERA------HMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HTTSTTC------CHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCCch------hHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 8743222 678999999999876 4555555555432211111 011234457777778888888876654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.75 E-value=9.5e-05 Score=63.51 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS 239 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 239 (851)
...|..++.+|...|++++|++.|+++++.++. +..+|..++.+|...|++++|++.|+++++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD--YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444455555555555555555444433 333444455555555555555555544443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00014 Score=62.33 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
+...+..++.+|.+.|++++|++.|+++++... .+...|..++.+|...|++++|++.|+++++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP--DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456666666667777777777777777666533 23455666677777777777777777766654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.69 E-value=0.13 Score=61.09 Aligned_cols=278 Identities=11% Similarity=0.048 Sum_probs=158.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC--CccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-------CCCHHHHHHHH
Q 038852 253 ISGFLNLGNLEKANELFDELKQRC--LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF-------RMTPATCNTLL 323 (851)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~~~~~~--~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-------~~~~~~~~~Li 323 (851)
.-+....|+.++++.+++..+..+ -.+....-..++-+....|..+++++++...+..+- ......-..|.
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 334566788888888887766532 111233334445556666766778888877765432 01112223333
Q ss_pred HHHHhCCC-HHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHH
Q 038852 324 EVLLKHEK-KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNII 402 (851)
Q Consensus 324 ~~~~~~g~-~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li 402 (851)
-+++..|. -+++.+.+..++..... . ....+-..|+.+|+..|+-+....++..+.+.... ++.-...+.
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd~~--~--~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e-----~vrR~aalg 531 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYNDSA--T--SGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHG-----NITRGLAVG 531 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTCCH--H--HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH-----HHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcCCH--H--HHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcH-----HHHHHHHHH
Confidence 33433343 24667777776653210 0 01123345555666778877777777776543211 333344455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHc
Q 038852 403 ARYCENEMLEEAEKLLREISTKSLSPDVT-TF---RTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITK 478 (851)
Q Consensus 403 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-~~---~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~ 478 (851)
-++...|+.+.+..+++.+... .|.. -| .+++.+|+..|+.....+++..+.+.. ..++.-...+..+++..
T Consensus 532 LGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 532 LALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLL 607 (963)
T ss_dssp HHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTS
T ss_pred HHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhcc
Confidence 5556788988888888888764 2332 22 345667888999887777998888653 33444444555566667
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 038852 479 GKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGL-FDMSKDIVDQMMKYGVGITPALQDFVRETFGK 547 (851)
Q Consensus 479 g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~ 547 (851)
|+.+.+.++++.+.+.+ .+....-..+.-+....|. ..++++++..+.. ..+..+....+.+++.
T Consensus 608 g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 608 RDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSM 673 (963)
T ss_dssp SSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHH
Confidence 88777777777666543 2222222233333333443 3678888888875 2455555544444443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0024 Score=77.05 Aligned_cols=152 Identities=14% Similarity=0.127 Sum_probs=86.7
Q ss_pred HHHcCCHHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHc
Q 038852 291 WFNQGKDKEAMQ-SYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH 369 (851)
Q Consensus 291 ~~~~g~~~~A~~-l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~ 369 (851)
....+++++|.+ ++..+. +......++..+.+.|..++|+++.+. ... -.......
T Consensus 609 ~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~--------------~~~---~f~~~l~~ 665 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD--------------QDQ---KFELALKV 665 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC--------------HHH---HHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC--------------cch---heehhhhc
Confidence 445666666665 441111 012225566667777777777765531 111 12334567
Q ss_pred CChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038852 370 GKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDA 449 (851)
Q Consensus 370 g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A 449 (851)
|++++|+++.+.+. +...|..|+..+.+.++++.|+++|.++.. |..+...|...|+.+..
T Consensus 666 ~~~~~A~~~~~~~~----------~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~ 726 (814)
T 3mkq_A 666 GQLTLARDLLTDES----------AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGL 726 (814)
T ss_dssp TCHHHHHHHHTTCC----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHhhC----------cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHH
Confidence 78888877765441 566788888888888888888888776642 34455555556666665
Q ss_pred HHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 450 LELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTK 490 (851)
Q Consensus 450 ~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~ 490 (851)
.++.+.+...|. ++....+|.+.|++++|+++|.+
T Consensus 727 ~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 727 VTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555544431 12233445556666666555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.002 Score=77.70 Aligned_cols=98 Identities=16% Similarity=0.131 Sum_probs=59.2
Q ss_pred HHcCChhHHHH-HHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 038852 150 YRAKRYDDAVA-LFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIG 228 (851)
Q Consensus 150 ~~~g~~~~A~~-l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~ 228 (851)
...+++++|.+ ++..+ ++......++..+.+.|..++|+++.+... .-.......|+++
T Consensus 610 ~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~-------------~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQD-------------QKFELALKVGQLT 669 (814)
T ss_dssp HHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH-------------HHHHHHHHHTCHH
T ss_pred HHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCcc-------------hheehhhhcCCHH
Confidence 35677777766 44221 112223666666777777777776553221 1123345677777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038852 229 EAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELK 273 (851)
Q Consensus 229 ~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~ 273 (851)
+|+++.+.+ . +...|..|+..+.+.++++.|+++|.++.
T Consensus 670 ~A~~~~~~~-----~-~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 670 LARDLLTDE-----S-AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHTTC-----C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhh-----C-cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 777765432 2 56777777777777777777777776653
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0057 Score=62.27 Aligned_cols=108 Identities=12% Similarity=0.122 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH-cCCH
Q 038852 411 LEEAEKLLREISTKSLSPD---VTTFRTLIDAYLKV-----ERIDDALELFNRMVESGLRVVVSFGTKVFNELIT-KGKV 481 (851)
Q Consensus 411 ~~~A~~l~~~m~~~g~~pd---~~~~~~Ll~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~-~g~~ 481 (851)
...|..+++++++. .|+ ...|..|+..|.+. |+.++|.++|+++++.+..-+...+..+...|+. .|+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 56788888888865 455 46889999999884 9999999999999998765445555557777777 4999
Q ss_pred HHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038852 482 AECAPILTKMGEKDPK--PDFLIYDVVVRGLCNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 482 ~~A~~ll~~m~~~~~~--pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~ 528 (851)
+++.+++++.+..... |+....+.+.+ ++|..+++++.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~~q--------~eA~~LL~~~~d 297 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVILSQ--------KRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHHHH--------HHHHHHHHTHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHHHH--------HHHHHHHHHhHH
Confidence 9999999999988776 66555444432 556666555443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00036 Score=59.28 Aligned_cols=58 Identities=14% Similarity=0.409 Sum_probs=28.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 038852 182 INTYCDEGKVDEGMNVFRRIIETAPVGPSSN-TYRHLTKGFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 182 i~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~-~~~~Li~~~~~~g~~~~A~~l~~~m~~~g 241 (851)
+..+...|++++|++.|+++++.++. +.. .|..++.+|...|++++|++.|+++++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV--GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS--THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 33444455555555555555554433 444 45555555555555555555555555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0023 Score=68.00 Aligned_cols=118 Identities=10% Similarity=0.099 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---C--CHHH--H-HHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCC
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA---G--RIGE--A-VDLLRDMLS-RQLGADSLVYNNLISGFLNLGN 261 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~---g--~~~~--A-~~l~~~m~~-~g~~pd~~~~~~Li~~~~~~g~ 261 (851)
+.+|+.+|+++++.+|. ....|..+..+|... + .-.. + ...++.... .....+..+|..+...+...|+
T Consensus 215 ~~~A~~l~e~Al~lDP~--~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd 292 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPE--FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK 292 (372)
T ss_dssp HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCC
Confidence 46788888888888776 556666555555421 1 1011 1 111111111 1123367777777777777788
Q ss_pred HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 038852 262 LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF 312 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 312 (851)
+++|+..+++++..+ ++...|..+..++...|++++|++.|++++..++
T Consensus 293 ~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 293 TDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 888888888888876 4566667777778888888888888888887765
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0044 Score=63.09 Aligned_cols=88 Identities=15% Similarity=0.069 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHH
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA-----GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL-GNLEK 264 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~-g~~~~ 264 (851)
...|..+++++++.++.-.+...|..|+..|... |+.++|.++|+++++.+..-+..++...++.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 3456666666666554433344566666666663 66666666666666655433355555566666553 66666
Q ss_pred HHHHHHHHHhcCCc
Q 038852 265 ANELFDELKQRCLV 278 (851)
Q Consensus 265 A~~~~~~~~~~~~~ 278 (851)
|.+.+++++.....
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 66666666665544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00065 Score=57.62 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=40.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 038852 145 IIAAMYRAKRYDDAVALFKYFFDQADIVPNIV-SYNNLINTYCDEGKVDEGMNVFRRIIETAPV 207 (851)
Q Consensus 145 li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~-~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~ 207 (851)
.+..+.+.|++++|++.|+++++... .+.. .|..++.+|...|++++|++.|+++++.++.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP--VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS--STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 34455667777777777777766432 2455 6777777777777777777777777776655
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0029 Score=67.15 Aligned_cols=134 Identities=13% Similarity=0.076 Sum_probs=90.6
Q ss_pred CHHHHHHHHHH--HHHcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---C--C---HHHHHHHHHHHHhc-
Q 038852 210 SSNTYRHLTKG--FVDAG---RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL---G--N---LEKANELFDELKQR- 275 (851)
Q Consensus 210 ~~~~~~~Li~~--~~~~g---~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~---g--~---~~~A~~~~~~~~~~- 275 (851)
+..+|...+++ +...+ ++.+|+++|+++++..+. ....|..+..+|... + . .+.....++.....
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 44455554443 33333 458999999999998766 666776666655421 1 1 11111122221111
Q ss_pred CCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038852 276 CLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNH 346 (851)
Q Consensus 276 ~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~ 346 (851)
....+..++..+...+...|++++|+..+++++..+ ++...|..+..++...|++++|++.|++++..+
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 123367778888777888899999999999999987 567778888899999999999999999998853
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.21 Score=58.30 Aligned_cols=127 Identities=14% Similarity=0.093 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhc------CCc-cc-----
Q 038852 215 RHLTKGFVDAGR-IGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG-NLEKANELFDELKQR------CLV-YD----- 280 (851)
Q Consensus 215 ~~Li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g-~~~~A~~~~~~~~~~------~~~-~d----- 280 (851)
..|++.+...++ ++.|+++|+++.+.....+......++..+...+ +--+|..++.+.++. ... .+
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344555555655 6889999999888754422222233333333333 233455666555431 110 01
Q ss_pred -----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038852 281 -----GVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQM 342 (851)
Q Consensus 281 -----~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m 342 (851)
..+...-++.+...|+++.|+++-+++....+ .+-.+|..|+.+|...|+++.|+-.+..+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222334556778888888888888877653 45678888888888888888888888776
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.25 E-value=1.6e-06 Score=93.13 Aligned_cols=221 Identities=12% Similarity=0.072 Sum_probs=136.2
Q ss_pred ccCCCccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHH
Q 038852 100 LVGPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYN 179 (851)
Q Consensus 100 ~~~~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~ 179 (851)
.+.+..++...+....+.|.+++-+..+..+.+.... ..+=+.|+-+|++.+++.+-.+++. .+|+.-..
T Consensus 79 kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke--~~IDteLi~ayAk~~rL~elEefl~--------~~N~A~iq 148 (624)
T 3lvg_A 79 KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE--SYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQ 148 (624)
T ss_dssp CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCS--TTTTHHHHHHHHTSCSSSTTTSTTS--------CCSSSCTH
T ss_pred hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc--cccHHHHHHHHHhhCcHHHHHHHHc--------CCCcccHH
Confidence 3455677889999999999999999888776654333 3334578888998888776444432 14544456
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhC-------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETA-------------------PVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~-------------------~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
.+++-|...|.++.|.-+|..+..-. ...-+..||..+-.+|+..+.+..|--+--.++-.
T Consensus 149 ~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh 228 (624)
T 3lvg_A 149 QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH 228 (624)
T ss_dssp HHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC
T ss_pred HHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc
Confidence 67777777777777766665442110 01124557888888888888777766554444422
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCC-----
Q 038852 241 QLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLME-RNFRM----- 314 (851)
Q Consensus 241 g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~-~~~~~----- 314 (851)
. .-...|+..|-..|.+++-+.+++..+..... ..-+++.|+-.|.|-. .++..+.++.... .++.-
T Consensus 229 a-----deL~elv~~YE~~G~f~ELIsLlEaglglErA-HmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKvirac 301 (624)
T 3lvg_A 229 A-----DELEELINYYQDRGYFEELITMLEAALGLERA-HMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAA 301 (624)
T ss_dssp S-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTC-CHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHH
T ss_pred H-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHH
Confidence 1 11234666777788888888888777643222 5667777777777653 2333333222111 11110
Q ss_pred -CHHHHHHHHHHHHhCCCHHHHHH
Q 038852 315 -TPATCNTLLEVLLKHEKKEEAQA 337 (851)
Q Consensus 315 -~~~~~~~Li~~~~~~g~~~~A~~ 337 (851)
....|..++..|+...+++.|..
T Consensus 302 E~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 302 EQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhhHHHHHHHHhcchhHHHHHH
Confidence 12457778888888888887654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.031 Score=65.25 Aligned_cols=129 Identities=15% Similarity=0.137 Sum_probs=85.0
Q ss_pred HHHHHHHHHH-cCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHc-----CCC-CCCH--
Q 038852 107 LHNRVQSLIR-AGD-LDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKR-YDDAVALFKYFFDQ-----ADI-VPNI-- 175 (851)
Q Consensus 107 l~~ll~~l~~-~g~-~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~~~~~-----~~~-~pd~-- 175 (851)
|...+..++. .++ ++.|+.+|+++......-+......++..+...++ --+|+.++.+.++. ... ..+.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 3344444444 455 58899999998876543333333344443333332 23566666665431 011 1121
Q ss_pred --------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 176 --------VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDM 237 (851)
Q Consensus 176 --------~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m 237 (851)
...+.-++.|...|+++.|+++.+++....|. +-.+|..|+.+|+..|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs--eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD--SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch--hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12233355677889999999999999998877 8899999999999999999999998876
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.24 E-value=0.37 Score=57.26 Aligned_cols=263 Identities=11% Similarity=0.031 Sum_probs=136.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCCCccCH--HHHHHHHH
Q 038852 291 WFNQGKDKEAMQSYKSLMERNFRMTP--ATCNTLLEVLLKHEKKEEAQALFEQMLDNHQ--PPNIQAVNS--DTFNIMVN 364 (851)
Q Consensus 291 ~~~~g~~~~A~~l~~~~~~~~~~~~~--~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~--~p~~~~~~~--~~~~~L~~ 364 (851)
....|+.++++.+++..+..+...+. ..-..++-++...|..+++++++...+...- .-+...... .+...|+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44566777777777665542111121 2233344455566666678888877765321 000000001 12223333
Q ss_pred HHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 038852 365 ECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVE 444 (851)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g 444 (851)
+|...++ +++.+.+..+...... . .....-..|+..|+-.|+-+....++..+.+. ..-+..-...++-++...|
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd~~--~-~~~~AalALGli~vGTgn~~ai~~LL~~~~e~-~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYNDSA--T-SGEAAALGMGLCMLGTGKPEAIHDMFTYSQET-QHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTCCH--H-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCC-HHHHHHHHHHHhcCCH--H-HHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHhhhCC
Confidence 3333343 4566666665543211 0 00112223444455678888888888877664 1112223334444555678
Q ss_pred CHHHHHHHHHHHHHcCCccchhHHH--HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 038852 445 RIDDALELFNRMVESGLRVVVSFGT--KVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDI 522 (851)
Q Consensus 445 ~~~~A~~~~~~m~~~~~~~~~~~~~--~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~ 522 (851)
+.+.+..+++.+.... .+...+.. .+..+|+..|+.....+++..+.+.. ..+..-...+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 8888888888777642 33333332 34556778889887777998888652 11222233333344556776667777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHH--HhcCCH-HHHHHHHHhhhh
Q 038852 523 VDQMMKYGVGITPALQDFVRETF--GKAGRG-EEIERVLNADRW 563 (851)
Q Consensus 523 ~~~m~~~g~~~~~~~~~~L~~~~--~~~G~~-~eA~~ll~~~~~ 563 (851)
++.+.+.+ ++.+....+.++ .-+|+. .+|++++..+..
T Consensus 617 v~~L~~~~---d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSH---NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCS---CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcC---CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 76555532 444444433333 334442 566767766653
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.51 Score=54.10 Aligned_cols=403 Identities=10% Similarity=0.008 Sum_probs=200.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLINTY 185 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~~~ 185 (851)
.+..+...++.|+++.+..+...+.. ..-..-..|..|...+ .....++...++++. .-.|- ...-+..+..+
T Consensus 9 ~~~~a~~a~~~~~~~~~~~l~~~l~~-~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~----~~~p~~~~Lr~~~l~~l 82 (618)
T 1qsa_A 9 RYAQIKQAWDNRQMDVVEQMMPGLKD-YPLYPYLEYRQITDDL-MNQPAVTVTNFVRAN----PTLPPARTLQSRFVNEL 82 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSGGGTT-STTHHHHHHHHHHHTG-GGCCHHHHHHHHHHC----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhcC-CCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHC----CCChhHHHHHHHHHHHH
Confidence 34556778888999888777655421 1111112232222111 122455555555432 21121 12234455666
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEK- 264 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~- 264 (851)
.+.+++...+.++.. .+. +...-..++.+....|+..+|....+++-..|.. ....+..|+..+.+.|.+..
T Consensus 83 ~~~~~w~~~l~~~~~----~p~--~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~~ 155 (618)
T 1qsa_A 83 ARREDWRGLLAFSPE----KPG--TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPL 155 (618)
T ss_dssp HHTTCHHHHHHHCCS----CCS--SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHH
T ss_pred HhCCCHHHHHHhccC----CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCHH
Confidence 778888877665543 122 5556666777888889988888877777666543 34456667777666554432
Q ss_pred -HHHHHHHHHhcCCc-----------cch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHh
Q 038852 265 -ANELFDELKQRCLV-----------YDG-VVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPA---TCNTLLEVLLK 328 (851)
Q Consensus 265 -A~~~~~~~~~~~~~-----------~d~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~---~~~~Li~~~~~ 328 (851)
...-++.+...+-. .+. .....++.++.+-.++ ...... +.++.. .+...+.-+.+
T Consensus 156 ~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~-----~~~~~~~~~~~~~~~~rlar 227 (618)
T 1qsa_A 156 AYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFART-----TGATDFTRQMAAVAFASVAR 227 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHH-----SCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhc-----cCCChhhHHHHHHHHHHHHh
Confidence 22222222222211 011 1111111111111111 111100 111111 11112222333
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCCccCHHHH----HHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHH
Q 038852 329 HEKKEEAQALFEQMLDNHQPPNIQAVNSDTF----NIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIAR 404 (851)
Q Consensus 329 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~----~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~ 404 (851)
.+.+.|..+|....+.... +.... ..++..+...+...++...+.+...... +.....-.+..
T Consensus 228 -~d~~~A~~~~~~~~~~~~~------~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~e~~~r~ 294 (618)
T 1qsa_A 228 -QDAENARLMIPSLAQAQQL------NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ------STSLIERRVRM 294 (618)
T ss_dssp -HCHHHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC------CHHHHHHHHHH
T ss_pred -cCHHHHHHHHHhhhhccCC------CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC------ChHHHHHHHHH
Confidence 3778899999887654322 22222 2233333334435677777777654322 22223334444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHH
Q 038852 405 YCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAEC 484 (851)
Q Consensus 405 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A 484 (851)
..+.|+++.|...|+.|..... .......-++.++...|+.++|..+|.++... ..+|..+. ..+.|..-.
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~-----~~fYg~lA--a~~Lg~~~~- 365 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ-----RGFYPMVA--AQRIGEEYE- 365 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CSHHHHHH--HHHTTCCCC-
T ss_pred HHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CChHHHHH--HHHcCCCCC-
Confidence 5577999999999988865322 23444556777888899999999999998752 13444232 122221000
Q ss_pred HHHHHHHhhCCC-CCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 485 APILTKMGEKDP-KPDFL---IYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLN 559 (851)
Q Consensus 485 ~~ll~~m~~~~~-~pd~~---~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~ 559 (851)
. ....... ..... .....+..+...|....|...+..+.+. .+......+..+....|..+.++....
T Consensus 366 ~----~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 366 L----KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp C----CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred C----CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0 0000000 00000 1112344566677777777777766653 234444455666666677766655443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0015 Score=72.14 Aligned_cols=88 Identities=6% Similarity=0.054 Sum_probs=51.0
Q ss_pred cCChhHHHHHHHHHHHcC--CCCC---C-HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCCC-HHHHHHHHH
Q 038852 152 AKRYDDAVALFKYFFDQA--DIVP---N-IVSYNNLINTYCDEGKVDEGMNVFRRIIET-----APVGPS-SNTYRHLTK 219 (851)
Q Consensus 152 ~g~~~~A~~l~~~~~~~~--~~~p---d-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~-----~~~~p~-~~~~~~Li~ 219 (851)
.|++++|+.++++.++.. -+.+ + ..+++.|+.+|...|++++|+.+++++++. ++..|+ ..+|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 356777777777765421 1111 1 346667777777777777777777766543 222232 234666666
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 038852 220 GFVDAGRIGEAVDLLRDMLS 239 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~ 239 (851)
.|...|++++|+.+|+++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 66666666666666665554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0034 Score=69.32 Aligned_cols=90 Identities=10% Similarity=0.008 Sum_probs=44.4
Q ss_pred HHHcCChHHHHHHHHHHHHhC-----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC-CC-HHHHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETA-----PVGP-SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR-----QLG-AD-SLVYNN 251 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~-----~~~p-~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~-----g~~-pd-~~~~~~ 251 (851)
+...|++++|+++++++++.. +..| ...+++.|+.+|...|++++|+.+++++++. |.. |+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 344455555555555554321 1111 1234555555555555555555555555431 111 11 244555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 038852 252 LISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 252 Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
|+..|...|++++|+.+|+++++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 66666666666666666665543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.027 Score=53.00 Aligned_cols=134 Identities=14% Similarity=0.103 Sum_probs=92.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYC 186 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~ 186 (851)
-.......+..|+++.|.++.+.+ .+...|..|.....+.|+++-|+++|.++- | +..|.-.|.
T Consensus 8 ~~~rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-------D---~~~L~~Ly~ 71 (177)
T 3mkq_B 8 PHIRFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH-------S---FDKLSFLYL 71 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-------C---HHHHHHHHH
T ss_pred hHHHHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-------C---HHHHHHHHH
Confidence 345677788889999998887765 357789999999999999999999998761 3 455555677
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038852 187 DEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKAN 266 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~ 266 (851)
..|+.+.-.++-+.....+ -++....++...|++++++++|.+.-+. + ..+......|..+.|.
T Consensus 72 ~tg~~e~L~kla~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~~~~r~----~-----eA~~~A~t~g~~~~a~ 135 (177)
T 3mkq_B 72 VTGDVNKLSKMQNIAQTRE-------DFGSMLLNTFYNNSTKERSSIFAEGGSL----P-----LAYAVAKANGDEAAAS 135 (177)
T ss_dssp HHTCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHHTTCH----H-----HHHHHHHHTTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHHHCCCh----H-----HHHHHHHHcCcHHHHH
Confidence 7788877776666655443 2556666777888999998888654321 1 1111122246667777
Q ss_pred HHHHHH
Q 038852 267 ELFDEL 272 (851)
Q Consensus 267 ~~~~~~ 272 (851)
++.+.+
T Consensus 136 ~~~~~~ 141 (177)
T 3mkq_B 136 AFLEQA 141 (177)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 776654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.098 Score=46.09 Aligned_cols=141 Identities=14% Similarity=0.097 Sum_probs=98.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcC
Q 038852 291 WFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHG 370 (851)
Q Consensus 291 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g 370 (851)
+.-.|..++..++..+..... +..-||.+|--....-+-+...++++.+-+. + |. ..+|
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F-------Di----------s~C~ 75 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F-------DL----------DKCQ 75 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S-------CG----------GGCS
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh-c-------Cc----------Hhhh
Confidence 344677777777777776553 2345666666666666666666666665432 1 11 1566
Q ss_pred ChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038852 371 KFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDAL 450 (851)
Q Consensus 371 ~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~ 450 (851)
++...+..|-.+.. +.......++.+...|+.|.-.+++.+++. +..++......+..+|.+.|+..+|.
T Consensus 76 NlKrVi~C~~~~n~---------~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~ 145 (172)
T 1wy6_A 76 NLKSVVECGVINNT---------LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDAT 145 (172)
T ss_dssp CTHHHHHHHHHTTC---------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHhcc---------hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHH
Confidence 77777777766632 455566777888889999999999888655 35667888888999999999999999
Q ss_pred HHHHHHHHcCCc
Q 038852 451 ELFNRMVESGLR 462 (851)
Q Consensus 451 ~~~~~m~~~~~~ 462 (851)
+++.++.+.|++
T Consensus 146 eLl~~AC~kG~k 157 (172)
T 1wy6_A 146 TLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHhhhH
Confidence 999999888864
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0058 Score=52.59 Aligned_cols=71 Identities=15% Similarity=0.275 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 038852 137 PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQAD-----IVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPV 207 (851)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-----~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~ 207 (851)
.+...|..|+..+.+.|+|+.|+..|+.+++... -.....++..|+.+|.+.|++++|+.+++++++..|.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 3455666777777778888888888777765421 1123556777777777777777777777777776655
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.054 Score=50.90 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=9.5
Q ss_pred cCCHHHHHHHHHhhh
Q 038852 548 AGRGEEIERVLNADR 562 (851)
Q Consensus 548 ~G~~~eA~~ll~~~~ 562 (851)
.|..+.|.++.+.+-
T Consensus 128 ~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 128 NGDEAAASAFLEQAE 142 (177)
T ss_dssp TTCHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHhC
Confidence 456667777776653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.078 Score=46.71 Aligned_cols=144 Identities=10% Similarity=0.040 Sum_probs=98.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 038852 111 VQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK 190 (851)
Q Consensus 111 l~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~ 190 (851)
++.++-.|..++..++..+..... +..-||.+|--....-+-+-..++++.+-+.. | ...+|+
T Consensus 14 AK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----D----------is~C~N 76 (172)
T 1wy6_A 14 AKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----D----------LDKCQN 76 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----C----------GGGCSC
T ss_pred HHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhc----C----------cHhhhc
Confidence 445667788888888888877654 56677777776667777777777776653221 1 134556
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFD 270 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~ 270 (851)
+...+..|-.+- . +.......+..+...|+-+.-.+++.+++.. ..++......+..+|.+.|+..+|.+++.
T Consensus 77 lKrVi~C~~~~n----~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 77 LKSVVECGVINN----T--LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp THHHHHHHHHTT----C--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhc----c--hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 665555554431 1 3445566677777888888888888886553 34577778888888888888888888888
Q ss_pred HHHhcCCc
Q 038852 271 ELKQRCLV 278 (851)
Q Consensus 271 ~~~~~~~~ 278 (851)
++-++|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 88877765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0058 Score=67.47 Aligned_cols=95 Identities=13% Similarity=0.159 Sum_probs=75.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCC--CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCCC-HHH
Q 038852 146 IAAMYRAKRYDDAVALFKYFFDQAD--IVPN----IVSYNNLINTYCDEGKVDEGMNVFRRIIET-----APVGPS-SNT 213 (851)
Q Consensus 146 i~~~~~~g~~~~A~~l~~~~~~~~~--~~pd----~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~-----~~~~p~-~~~ 213 (851)
+..+.+.|++++|+++++++++... +.++ ..+++.|+.+|...|++++|+.+++++++. ++..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4456678999999999999876421 1222 458899999999999999999999988754 344444 357
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 214 YRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 214 ~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
++.|+..|...|++++|+.+|+++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 899999999999999999999998763
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0058 Score=67.43 Aligned_cols=89 Identities=7% Similarity=0.013 Sum_probs=71.2
Q ss_pred HcCCHHHHHHHHHHHHHcC---CCC---C-HHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CC-CCCC-HHHHHHHH
Q 038852 116 RAGDLDAASYLARQAVFSR---IRP---T-VFTCNAIIAAMYRAKRYDDAVALFKYFFDQ----AD-IVPN-IVSYNNLI 182 (851)
Q Consensus 116 ~~g~~~~A~~l~~~~~~~~---~~~---~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~----~~-~~pd-~~~~~~Li 182 (851)
..|++++|+.++++++... ..+ + ..+++.|+.+|...|+|++|+.+++++++. .| ..|+ ..+|+.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3578999999999987632 122 2 467999999999999999999999998753 22 2333 45799999
Q ss_pred HHHHHcCChHHHHHHHHHHHHh
Q 038852 183 NTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 183 ~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
.+|...|++++|+.+|+++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999998763
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.1 Score=57.64 Aligned_cols=170 Identities=9% Similarity=0.068 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhccCC-CCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--H
Q 038852 358 TFNIMVNECFKHGKFSEAIETFKKAGTHP-KSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREIST----KSLSPD--V 430 (851)
Q Consensus 358 ~~~~L~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~pd--~ 430 (851)
....|+..|...|++.+|.+++..+.... ......--+..|...++.|...+++..|..+++++.. ....++ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 44667888888888888888888764221 1111111245677778888888899888888887642 212222 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Cccch----hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 038852 431 TTFRTLIDAYLKVERIDDALELFNRMVESG-LRVVV----SFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDV 505 (851)
Q Consensus 431 ~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~-~~~~~----~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ 505 (851)
..+...+..+...+++.+|...|.++.+.. ...+. .....++.+..-.+....-..++.+........+...|..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~ 298 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQES 298 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHH
Confidence 355677777888888888888888776531 00011 1111122222222222222222332222212235567777
Q ss_pred HHHHHHhc--CChHHHHHHHHHHH
Q 038852 506 VVRGLCNE--GLFDMSKDIVDQMM 527 (851)
Q Consensus 506 ll~a~~~~--g~~~~A~~~~~~m~ 527 (851)
++.+|... .+++.+.+.|...+
T Consensus 299 L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 299 LVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHHHhchHhhhHHHHHHHHHHh
Confidence 77777653 34566555554433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.013 Score=49.14 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 038852 174 NIVSYNNLINTYCDEGK---VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~---~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g 241 (851)
|...+..++.++...++ .++|..+|+++++.++. +..++..++..+.+.|++++|+++|+++++..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~--~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY--NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 44555555555544433 46666666666666555 55566666666666666666666666666553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.021 Score=47.92 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH
Q 038852 136 RPTVFTCNAIIAAMYRAKR---YDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSN 212 (851)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~---~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~ 212 (851)
..|...+..+..+++..++ .++|..+|+++++.+. .++..+..++..+.+.|++++|+..|+++++.++..++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp--~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~ 80 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP--YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRV 80 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 3466777778888765554 6899999999988654 4677888888999999999999999999988776544443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.28 Score=52.76 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=56.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--C--CCCCCccCH
Q 038852 286 TFMEWWFNQGKDKEAMQSYKSLMERNFRMT-----PATCNTLLEVLLKHEKKEEAQALFEQMLDNH--Q--PPNIQAVNS 356 (851)
Q Consensus 286 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~-----~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~--~--~p~~~~~~~ 356 (851)
.++..|...|++.+|.+++.++.+.--+.| ..++...+..|...+++.++..++..+.... + .|.. ..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i---~a 180 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV---QG 180 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH---HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH---HH
Confidence 566667777777777777766665322111 1345555677778888888888887765421 1 1110 12
Q ss_pred HHHHHHHHHHH-HcCChHHHHHHHHHhc
Q 038852 357 DTFNIMVNECF-KHGKFSEAIETFKKAG 383 (851)
Q Consensus 357 ~~~~~L~~~~~-~~g~~~~A~~~~~~~~ 383 (851)
.....-+.++. ..++|.+|...|-++.
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22333444556 6788888887776653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.013 Score=53.83 Aligned_cols=88 Identities=11% Similarity=0.029 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 038852 119 DLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAK---RYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGM 195 (851)
Q Consensus 119 ~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~ 195 (851)
.+..+++.|.+....+. .+..+...+..++++.+ ++++++.+|+++++......+...+..|.-+|.+.|++++|+
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34456666776666553 67778788888888877 777999999998886411013566777888889999999999
Q ss_pred HHHHHHHHhCCC
Q 038852 196 NVFRRIIETAPV 207 (851)
Q Consensus 196 ~l~~~~~~~~~~ 207 (851)
+.++.+++..|.
T Consensus 92 ~y~~~lL~ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHhcCCC
Confidence 999999998765
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.28 Score=52.81 Aligned_cols=177 Identities=14% Similarity=0.045 Sum_probs=99.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccC--HHHH
Q 038852 321 TLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMD--VAGY 398 (851)
Q Consensus 321 ~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d--~~~~ 398 (851)
.|+..|...|++.+|.+++.++.+.-...|....-.+++..-+.+|...+++.++...+.++......-...|. ....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 58899999999999999999998743332221223456777788999999999999999887543211001111 1222
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHH-HHHHcCCccchhHHHH
Q 038852 399 NNIIARYC-ENEMLEEAEKLLREISTKSLSPDV------TTFRTLIDAYLKVERIDDALELFN-RMVESGLRVVVSFGTK 470 (851)
Q Consensus 399 ~~li~~~~-~~g~~~~A~~l~~~m~~~g~~pd~------~~~~~Ll~~~~~~g~~~~A~~~~~-~m~~~~~~~~~~~~~~ 470 (851)
.+-+..+. ..++|.+|...|-+..+.-...+. ..|..|.. .-.++..+...++. +....-..+...++..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a--Ll~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK--IMLGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH--HHTTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHcCCHHHHHHHhccccccccCCccHHHHHH
Confidence 33344566 789999998888776432111121 12322222 22233222222221 2111112445555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH
Q 038852 471 VFNELITKGKVAECAPILTKMGEKDPKPDFL 501 (851)
Q Consensus 471 L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~ 501 (851)
++.+ ...+++.+...+++..... +..|..
T Consensus 262 L~~a-~~~~dl~~f~~iL~~~~~~-l~~D~~ 290 (394)
T 3txn_A 262 VAEA-SHKRSLADFQAALKEYKKE-LAEDVI 290 (394)
T ss_dssp HHHH-HHTTCHHHHHHHHHHSTTT-TTTSHH
T ss_pred HHHH-HHhCCHHHHHHHHHHHHHH-HhcChH
Confidence 5554 4567887777777765432 344554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.017 Score=49.56 Aligned_cols=75 Identities=9% Similarity=0.010 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAP-----VGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLV 248 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~-----~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~ 248 (851)
+...+..|+..+.+.|+++.|+..|+.+++... ......++..|+.+|.+.|++++|+.+++++++..+. +..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~-~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHH
Confidence 455567788888888888888888888876521 1234567778888888888888888888888776544 4444
Q ss_pred H
Q 038852 249 Y 249 (851)
Q Consensus 249 ~ 249 (851)
.
T Consensus 83 ~ 83 (104)
T 2v5f_A 83 N 83 (104)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.44 Score=52.60 Aligned_cols=164 Identities=12% Similarity=0.084 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCcc--ch
Q 038852 397 GYNNIIARYCENEMLEEAEKLLREISTK--SLSPD---VTTFRTLIDAYLKVERIDDALELFNRMVE----SGLRV--VV 465 (851)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd---~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~----~~~~~--~~ 465 (851)
....|+..|...|++.+|.+++.++... +.... ...+...+..|...+++.+|..+++++.. ....+ -.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3467888999999999999999998642 22211 34677788899999999999999998753 22122 34
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhC-CCCCCHHHHH----HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038852 466 SFGTKVFNELITKGKVAECAPILTKMGEK-DPKPDFLIYD----VVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDF 540 (851)
Q Consensus 466 ~~~~~L~~~~~~~g~~~~A~~ll~~m~~~-~~~pd~~~~~----~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 540 (851)
.++...+..+...++|.+|...|.++.+. ...-|...+. .++.+..-.+....-..++..........+...+..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~ 298 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQES 298 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHH
Confidence 56667788888899999999888877542 1111332222 122222222222222233333332222234556666
Q ss_pred HHHHHHhc--CCHHHHHHHHHh
Q 038852 541 VRETFGKA--GRGEEIERVLNA 560 (851)
Q Consensus 541 L~~~~~~~--G~~~eA~~ll~~ 560 (851)
++.+|... .+++.+.+.|+.
T Consensus 299 L~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 299 LVKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHHHHHCCSSSHHHHHHHTCS
T ss_pred HHHHHHhchHhhhHHHHHHHHH
Confidence 77777653 356666555554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=96.23 E-value=1.4 Score=45.81 Aligned_cols=25 Identities=32% Similarity=0.251 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 394 DVAGYNNIIARYCENEMLEEAEKLL 418 (851)
Q Consensus 394 d~~~~~~li~~~~~~g~~~~A~~l~ 418 (851)
|......++..|.+.+++.+|+..|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5566666777777777777776665
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.029 Score=51.46 Aligned_cols=83 Identities=19% Similarity=0.114 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG---RIGEAVDLLRDMLSRQ-LGADSLVYNNLISGFLNLGNLEKAN 266 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g---~~~~A~~l~~~m~~~g-~~pd~~~~~~Li~~~~~~g~~~~A~ 266 (851)
+..+.+.|.+....++ ++..+...++.++++.+ ++++++.+|+++++.+ ..-+...+..|..+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~--~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 3344444444444332 24555555555555554 4445555555555543 1012334444555555555555555
Q ss_pred HHHHHHHhc
Q 038852 267 ELFDELKQR 275 (851)
Q Consensus 267 ~~~~~~~~~ 275 (851)
++++.+++.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 555555544
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=96.13 E-value=1.5 Score=45.27 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 394 DVAGYNNIIARYCENEMLEEAEKLLR 419 (851)
Q Consensus 394 d~~~~~~li~~~~~~g~~~~A~~l~~ 419 (851)
|......++..|.+.|++.+|+..|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 56666667777777777777666553
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.057 Score=48.73 Aligned_cols=111 Identities=9% Similarity=0.043 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHHcCCh------HHHHHHHHHhccCCCCCCC---ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038852 355 NSDTFNIMVNECFKHGKF------SEAIETFKKAGTHPKSKPF---AMDVAGYNNIIARYCENEMLEEAEKLLREISTKS 425 (851)
Q Consensus 355 ~~~~~~~L~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 425 (851)
|.++|...+....+.|+. ++.+++|+++....+.... ..-+..|...+. +...+|.++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHh
Confidence 566666666666666666 6666666665432211100 001111211111 233467777777777776542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhH
Q 038852 426 LSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSF 467 (851)
Q Consensus 426 ~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 467 (851)
-.- ..+|......-.+.|++++|.+++.+++..+.++...+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 222 66777777777777888888888888777776654443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.041 Score=48.51 Aligned_cols=97 Identities=12% Similarity=0.071 Sum_probs=65.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDD---AVALFKYFFDQADIVPNIVSYNNLINTYC 186 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~l~~~~~~~~~~~pd~~~~~~Li~~~~ 186 (851)
++...+....+..+.+.+.+....+. ++..+-..+..++++.++..+ ++.+++.+++.............|+-++.
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 34444455556666666776665553 566666667777777766555 88888888664211113445667777888
Q ss_pred HcCChHHHHHHHHHHHHhCCC
Q 038852 187 DEGKVDEGMNVFRRIIETAPV 207 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~ 207 (851)
+.|+|++|++.++.+++..|.
T Consensus 86 klg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT
T ss_pred HhhhHHHHHHHHHHHHHhCCC
Confidence 899999999999998888766
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.065 Score=48.37 Aligned_cols=53 Identities=19% Similarity=0.150 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 038852 225 GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLV 278 (851)
Q Consensus 225 g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~ 278 (851)
+|.++|.++|+.+++.+-+ -..+|...+..-.+.|++++|++++.+.+..+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 4555555555555443222 2444544445555555555555555555554444
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.037 Score=51.10 Aligned_cols=138 Identities=13% Similarity=0.140 Sum_probs=81.8
Q ss_pred CCccHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC
Q 038852 103 PRLNLHNRVQSLIRAGDLDAASYLARQAVFSR-IRPT-------VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN 174 (851)
Q Consensus 103 ~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~-~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd 174 (851)
....+.+-++.++..+.++.|+.+.+.++... ..++ ..++..++++++..|+|..|...|+.++.....-+.
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 34688999999999999999998888755432 2233 236677889999999999999999998653222111
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 175 -IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 175 -~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
..++..+. ....... ......+.+.-..+..||.+.+++++|+.+++.+-.+.- +..+-..|+
T Consensus 99 ~~s~~~~~~----~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R--t~kvnm~La 162 (167)
T 3ffl_A 99 TSKVRPSTG----NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR--TPKINMLLA 162 (167)
T ss_dssp --------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC--CHHHHHHHH
T ss_pred CCCcccccc----ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc--CHHHHHHHH
Confidence 11111110 0000000 000122445555678888888888888888887644321 444444455
Q ss_pred HHH
Q 038852 254 SGF 256 (851)
Q Consensus 254 ~~~ 256 (851)
+.|
T Consensus 163 kLy 165 (167)
T 3ffl_A 163 NLY 165 (167)
T ss_dssp HHC
T ss_pred HHh
Confidence 443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=95.21 E-value=3.4 Score=42.69 Aligned_cols=170 Identities=12% Similarity=0.098 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHH----HHHHHHhcCCCCHHHHHHHH
Q 038852 248 VYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQS----YKSLMERNFRMTPATCNTLL 323 (851)
Q Consensus 248 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l----~~~~~~~~~~~~~~~~~~Li 323 (851)
.|.++..-|.+.+++++|++++..-... +.+.|.+..|.++ ++...+.+.+.+......|+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~---------------ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGALS---------------FLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH---------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3444555566666666666665433221 3344444443333 23333445566666666666
Q ss_pred HHHHhCCCHH-HHHHHHHHHHH----cCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHH
Q 038852 324 EVLLKHEKKE-EAQALFEQMLD----NHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGY 398 (851)
Q Consensus 324 ~~~~~~g~~~-~A~~l~~~m~~----~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~ 398 (851)
..+......+ .-.++++++++ .+..+ ..+......++..|.+.|++.+|...|-.... + |...+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~---~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~---~-----s~~~~ 168 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYK---FGDPYLHNTIGSKLLEGDFVYEAERYFMLGTH---D-----SMIKY 168 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCT---TCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCH---H-----HHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCC---CCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCC---c-----cHHHH
Confidence 6654432111 12333333332 22211 12788999999999999999999998863210 0 34445
Q ss_pred HHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 399 NNIIARYCEN---EMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 399 ~~li~~~~~~---g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
..++.-+... |...++- ...-. .+-.|...+++..|..+|+...+
T Consensus 169 a~~l~~w~~~~~~~~~~e~d--------------lf~~R-aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 169 VDLLWDWLCQVDDIEDSTVA--------------EFFSR-LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHHTTCCCHHHHH--------------HHHHH-HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcchHH--------------HHHHH-HHHHHHHhcCHHHHHHHHHHHHH
Confidence 5444443333 4333321 11112 22245567888888888887653
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=95.20 E-value=3.5 Score=42.83 Aligned_cols=169 Identities=14% Similarity=0.183 Sum_probs=87.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHH----HHHHHhcCCCCHHHHHHHHH
Q 038852 249 YNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSY----KSLMERNFRMTPATCNTLLE 324 (851)
Q Consensus 249 ~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~----~~~~~~~~~~~~~~~~~Li~ 324 (851)
|.++..-|.+.+++++|++++..-... +.+.|....|.++. +...+.++++|......|+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~~---------------ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQT---------------LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHH---------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344555566667777776665432211 33334443333332 33334455566666666666
Q ss_pred HHHhCCCHH-HHHHHHHHHHH----cCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHH
Q 038852 325 VLLKHEKKE-EAQALFEQMLD----NHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYN 399 (851)
Q Consensus 325 ~~~~~g~~~-~A~~l~~~m~~----~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~ 399 (851)
.+......+ .=.++++++++ .|..+ ..+......++..|.+.+++.+|...|-. . .+ + ....|.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~---~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il--g--~~-~---s~~~~a 171 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYP---AGDPELHHVVGTLYVEEGEFEAAEKHLVL--G--TK-E---SPEVLA 171 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCT---TCCHHHHHHHHHHHHHTTCHHHHHHHHTT--S--CT-T---HHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHh--c--CC-c---hHHHHH
Confidence 655444311 11223333332 22111 12788999999999999999999998832 1 11 0 234554
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 400 NIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 400 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
.++.-+...+... +.|.++-. .+-.|...+++..|..+|+...+
T Consensus 172 ~mL~ew~~~~~~~--------------e~dlfiaR-aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 172 RMEYEWYKQDESH--------------TAPLYCAR-AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHTSCGG--------------GHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCc--------------cHHHHHHH-HHHHHHHhCCHHHHHHHHHHHHH
Confidence 4443333333211 11222223 33345667889888887776654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.26 Score=61.52 Aligned_cols=106 Identities=10% Similarity=0.030 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCcc------------------CHHHHHHHHHHHHhcCCHHHHHH
Q 038852 355 NSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAM------------------DVAGYNNIIARYCENEMLEEAEK 416 (851)
Q Consensus 355 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------d~~~~~~li~~~~~~g~~~~A~~ 416 (851)
+......++.+|...|++++|.++|.++........... ...-|..++..+.+.+.++.+.+
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444556677778888888888888877632211111000 11234556666666666666666
Q ss_pred HHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 417 LLREISTKSLSPDV----TTFRTLIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 417 l~~~m~~~g~~pd~----~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
+-..+++....-+. ..|..+..++...|++++|...+-.+.+..
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 66555543211121 245666666777777777766666655443
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.66 Score=42.43 Aligned_cols=87 Identities=14% Similarity=0.076 Sum_probs=54.5
Q ss_pred HHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------------
Q 038852 364 NECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLS---------------- 427 (851)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---------------- 427 (851)
.++.-.|.+.+++-++.... ...+..--..+|.+.+++..|...++.+++..+.
T Consensus 41 I~LyyngEY~R~Lf~L~~lN----------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~ 110 (242)
T 3kae_A 41 IVLYLNGEYTRALFHLHKLN----------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDP 110 (242)
T ss_dssp HHHHHTTCHHHHHHHHHTCC----------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCT
T ss_pred hhhhhcchHhHHHHHHHhcc----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeecc
Confidence 34456677777776665541 1111112223556677777777777777643332
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 428 PD-VTTFRTLIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 428 pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
-| ...++.++..|...|+.++|+..|.......
T Consensus 111 ~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 111 GDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp TCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 12 3456778888888999999999988877654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.15 Score=47.06 Aligned_cols=136 Identities=10% Similarity=0.085 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-H
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNI-------VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSS-N 212 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~-------~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~-~ 212 (851)
.+..-+..+...|.|+.|+-+.+.++...+..+++ .++..+++++...|+|.+|...|++++.....-+.. .
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34445667788999999999988876544333442 356778899999999999999999987643221111 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHH
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWW 291 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~ 291 (851)
++..+. ....... ......+...-..+..+|.+.+++++|+.+++.+-.+.. +..+...|++.|
T Consensus 102 ~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R--t~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR--TPKINMLLANLY 165 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC--CHHHHHHHHHHC
T ss_pred cccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc--CHHHHHHHHHHh
Confidence 111110 0000000 011223556666799999999999999999988654432 334444444443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.55 Score=58.59 Aligned_cols=192 Identities=14% Similarity=0.159 Sum_probs=99.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------------------
Q 038852 145 IIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIET-------------------- 204 (851)
Q Consensus 145 li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~-------------------- 204 (851)
++..+.+.+.++.|.++.... . .+...-..++.+|..+|++++|.++|.++...
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-N-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-C-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-c-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 444555566666555544332 1 23333345556666666666666666553110
Q ss_pred CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc
Q 038852 205 AP-VGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADS----LVYNNLISGFLNLGNLEKANELFDELKQRCLVY 279 (851)
Q Consensus 205 ~~-~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~ 279 (851)
.. ...-..-|..++..+.+.+.++.++++-..+++....-+. ..|..+.+.+...|++++|...+..+......
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 00 0011234666777777777777777777766654322222 25666777777777777777777665544332
Q ss_pred chhhHHHHHHHHHHc------------CCHHHHHHHHHHHHH-h-cCCCCHHHHHHHHHHHHhCCCHHHH-HHHHHHHHH
Q 038852 280 DGVVNATFMEWWFNQ------------GKDKEAMQSYKSLME-R-NFRMTPATCNTLLEVLLKHEKKEEA-QALFEQMLD 344 (851)
Q Consensus 280 d~~~~~~li~~~~~~------------g~~~~A~~l~~~~~~-~-~~~~~~~~~~~Li~~~~~~g~~~~A-~~l~~~m~~ 344 (851)
......|+..+|.. |..++..+++....+ . .+...+..|..|-..+...|++.+| .-+|+.+.+
T Consensus 971 -~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 23344444444433 445555555543322 1 1222223455455555666666654 445555544
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=94.70 E-value=1.6 Score=50.12 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAV 131 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~ 131 (851)
..+..+|--++|+|++++|.++.++..
T Consensus 153 ~p~Wa~IyY~LR~G~~~~A~e~~~~~~ 179 (661)
T 2qx5_A 153 VPIWALIFYLLRAGLIKEALQVLVENK 179 (661)
T ss_dssp EEHHHHHHHHHTTTCHHHHHHHHHHTG
T ss_pred cccHHHHHHHHhcCCHHHHHHHHHHhh
Confidence 358899999999999999999987754
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.62 E-value=0.14 Score=45.04 Aligned_cols=85 Identities=18% Similarity=0.067 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGE---AVDLLRDMLSRQ-LGADSLVYNNLISGFLNLGNLEKAN 266 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~---A~~l~~~m~~~g-~~pd~~~~~~Li~~~~~~g~~~~A~ 266 (851)
+..+.+.|.+....+. ++..+-..++.++++..+..+ ++.+++++.+.+ ..-.......|+-++.+.|++++|+
T Consensus 17 l~~~~~~y~~e~~~~~--~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC--CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3445555555555443 355666666666666665444 666676666653 1112344445666666777777777
Q ss_pred HHHHHHHhcCC
Q 038852 267 ELFDELKQRCL 277 (851)
Q Consensus 267 ~~~~~~~~~~~ 277 (851)
++++.+++..+
T Consensus 95 ~~~~~lL~~eP 105 (126)
T 1nzn_A 95 KYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHhCC
Confidence 77766666543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.64 Score=50.26 Aligned_cols=69 Identities=9% Similarity=0.126 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCCHHH
Q 038852 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS-----RQLGADSLV 248 (851)
Q Consensus 178 ~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~~ 248 (851)
...++..+...|++++|+..++.++..+|. +...|..|+.+|.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~--~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPY--REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 445566667777777777777777777666 777777777777777777777777776543 466666544
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=94.52 E-value=2.2 Score=48.97 Aligned_cols=82 Identities=10% Similarity=-0.052 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHH
Q 038852 286 TFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNE 365 (851)
Q Consensus 286 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~ 365 (851)
.+..++.-.|.+|.|++++-+. ...+.+ .++-++...|-+.. -+.++... ++. ...-+..|+..
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAV---H~AIaL~~~gLL~~----~~~lls~~--~~~---~~lN~arLI~~ 362 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAV---HLAIGLASLKLFKI----DSSTRLTK--KPK---RDIRFANILAN 362 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHH---HHHHHHHHTTC--------------------------CHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHH---HHHHHHHHcCCccC----CCcccccC--CCc---ccccHHHHHHH
Confidence 4556677789999998877654 111222 23334444454443 11111110 000 12235666666
Q ss_pred HH---HcCChHHHHHHHHHhc
Q 038852 366 CF---KHGKFSEAIETFKKAG 383 (851)
Q Consensus 366 ~~---~~g~~~~A~~~~~~~~ 383 (851)
|. +..+..+|+++|--+.
T Consensus 363 Yt~~F~~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 363 YTKSFRYSDPRVAVEYLVLIT 383 (661)
T ss_dssp HHTTTTTTCHHHHHHHHHGGG
T ss_pred HHHHhhcCCHHHHHHHHHHHh
Confidence 65 4677888888887763
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=2.7 Score=45.25 Aligned_cols=138 Identities=9% Similarity=0.050 Sum_probs=92.1
Q ss_pred ccCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhC--CC-CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCccc
Q 038852 392 AMDVAGYNNIIARYC---ENEMLEEAEKLLREISTK--SL-SPDVTTFRTLIDAYLKVERI-DDALELFNRMVESGLRVV 464 (851)
Q Consensus 392 ~~d~~~~~~li~~~~---~~g~~~~A~~l~~~m~~~--g~-~pd~~~~~~Ll~~~~~~g~~-~~A~~~~~~m~~~~~~~~ 464 (851)
..|...|..++.... ..|+.++|.+.+++++.. |. -++.. ...+ +.....+++...
T Consensus 109 ~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~~~------ 171 (388)
T 2ff4_A 109 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVEDKV------ 171 (388)
T ss_dssp GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHHHH------
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHHHH------
Confidence 346666766665433 357888999999888764 21 11110 0111 111122222211
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCCCHHHHH
Q 038852 465 VSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMM-----KYGVGITPALQD 539 (851)
Q Consensus 465 ~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~-----~~g~~~~~~~~~ 539 (851)
.....++..+...|++++|+..++.+.....- +...|..++.+|.+.|+..+|++.|+++. +.|+.|.+.+..
T Consensus 172 -~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 172 -LAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 11223667788899999999999998876443 78899999999999999999999999876 369999999888
Q ss_pred HHHHHHHhc
Q 038852 540 FVRETFGKA 548 (851)
Q Consensus 540 ~L~~~~~~~ 548 (851)
..-.++...
T Consensus 250 l~~~il~~~ 258 (388)
T 2ff4_A 250 LNERILRQQ 258 (388)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 776666543
|
| >3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A | Back alignment and structure |
|---|
Probab=92.09 E-value=0.011 Score=65.77 Aligned_cols=11 Identities=27% Similarity=0.220 Sum_probs=5.5
Q ss_pred CCHHHHHHHHH
Q 038852 409 EMLEEAEKLLR 419 (851)
Q Consensus 409 g~~~~A~~l~~ 419 (851)
.+.+.|.++++
T Consensus 271 ~~~e~A~~fl~ 281 (449)
T 3iot_A 271 PNKELAKEFLE 281 (449)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 34555555553
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.85 E-value=1.5 Score=39.22 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038852 209 PSSNTYRHLTKGFVDAGR---IGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCL 277 (851)
Q Consensus 209 p~~~~~~~Li~~~~~~g~---~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~ 277 (851)
++..+-..++.++++..+ ..+++.+++++.+.+..-.......|+-++.+.|++++|+++.+.+++..+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 455555555555555443 334555666555544332334444555566666666666666666655433
|
| >3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A | Back alignment and structure |
|---|
Probab=91.29 E-value=0.035 Score=61.72 Aligned_cols=12 Identities=8% Similarity=0.346 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHc
Q 038852 334 EAQALFEQMLDN 345 (851)
Q Consensus 334 ~A~~l~~~m~~~ 345 (851)
++++.+.++.+.
T Consensus 190 ~al~~~~~l~~~ 201 (449)
T 3iot_A 190 AGLTFLVDLIKN 201 (449)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 333444444333
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.25 E-value=0.92 Score=40.08 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038852 209 PSSNTYRHLTKGFVDAGR---IGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRC 276 (851)
Q Consensus 209 p~~~~~~~Li~~~~~~g~---~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~ 276 (851)
++..+-..++.++++..+ ..+++.+++++.+.+..-....+..|+-++.+.|++++|+++.+.+++..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 344555555555555443 33455666665554432233445555666666666666666666665543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.80 E-value=1.8 Score=38.16 Aligned_cols=59 Identities=20% Similarity=0.153 Sum_probs=31.6
Q ss_pred HHHHHHHcCCH---HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038852 471 VFNELITKGKV---AECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKY 529 (851)
Q Consensus 471 L~~~~~~~g~~---~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~ 529 (851)
++.++++..+. .+++.+++++.+.+..-....+-.|..++.+.|++++|+++.+.+++.
T Consensus 46 yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 46 YAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 44555555433 345666666655432212334444555666666666666666666653
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.50 E-value=3.1 Score=45.88 Aligned_cols=65 Identities=12% Similarity=0.078 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 038852 395 VAGYNNIIARYCENEMLEEAEKLLREISTKSL-SPD---VTTFRTLIDAYLKVERIDDALELFNRMVES 459 (851)
Q Consensus 395 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd---~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 459 (851)
...+|.+++.|...+.++.|.+++.+..--.. ..| ..-+..++..+.-.+++.+|.+.|..+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45677777777777777777777776641100 011 112234566666677777777777777654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=90.47 E-value=28 Score=39.68 Aligned_cols=49 Identities=6% Similarity=-0.062 Sum_probs=25.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHH
Q 038852 437 IDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPIL 488 (851)
Q Consensus 437 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll 488 (851)
+..+...|....|...+..+.+.. .+ .-...+.......|.++.++...
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~~-~~--~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKSK-SK--TEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-CH--HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHhcC-CH--HHHHHHHHHHHHCCChHHHHHHH
Confidence 344566777777777776666532 11 11122334444556555555433
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=90.25 E-value=11 Score=34.59 Aligned_cols=114 Identities=12% Similarity=0.107 Sum_probs=59.7
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 038852 148 AMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLIN-TYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGR 226 (851)
Q Consensus 148 ~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~-~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~ 226 (851)
-+.+-.+++.++-+-.-+.. +..-|..|+. .+.-.|.+.+++-++... + +..+...-.-||.+..+
T Consensus 11 Ks~kY~dYdt~~fLsa~L~~------~~~eY~lL~~I~LyyngEY~R~Lf~L~~l---N----T~Ts~YYk~LCy~klKd 77 (242)
T 3kae_A 11 KSIRYRDYETAIFLAACLLP------CKPEYRMLMSIVLYLNGEYTRALFHLHKL---N----TCTSKYYESLCYKKKKD 77 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHC----------CTHHHHHHHHHHTTCHHHHHHHHHTC---C----BHHHHHHHHHHHHHTTC
T ss_pred HHhhcccccHHHHHHHHHcc------CChHHHhhhhhhhhhcchHhHHHHHHHhc---c----hHHHHHHHHHHHHHHHH
Confidence 34567788877654443321 1112333332 345678888877665432 1 22222222346777888
Q ss_pred HHHHHHHHHHHHhcCCCCC--H---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 227 IGEAVDLLRDMLSRQLGAD--S---------------LVYNNLISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 227 ~~~A~~l~~~m~~~g~~pd--~---------------~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
+..|+..++.+++..+.-| + ..|+.++..|...|+.++|+..|..--.
T Consensus 78 YkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 78 YKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 8888888888885443321 1 2344444455555555555555544333
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.18 E-value=3.7 Score=36.74 Aligned_cols=61 Identities=18% Similarity=0.120 Sum_probs=42.0
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038852 470 KVFNELITKGK---VAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG 530 (851)
Q Consensus 470 ~L~~~~~~~g~---~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g 530 (851)
.+..++++..+ ..+++.+++.+.+.+..-....+-.|.-++.+.|++++|+++.+.+++..
T Consensus 44 ~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 44 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 36677777665 44677888887775433234444556677888888888888888888754
|
| >3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B | Back alignment and structure |
|---|
Probab=89.60 E-value=20 Score=39.87 Aligned_cols=75 Identities=12% Similarity=0.073 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038852 479 GKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIE 555 (851)
Q Consensus 479 g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~ 555 (851)
.+.......+++++.+-.--+..-...++..|.+.|..+.|.++++.+-.+-+. +...+ ..+..|.|+|+++...
T Consensus 495 ~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELVK 569 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred cchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhcc
Confidence 344445555666655533335556667788888888888888888887654322 22233 4556778888877653
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=88.98 E-value=4.9 Score=40.16 Aligned_cols=120 Identities=15% Similarity=0.143 Sum_probs=64.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHhCCCH
Q 038852 255 GFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTP--ATCNTLLEVLLKHEKK 332 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~--~~~~~Li~~~~~~g~~ 332 (851)
...+.|++++|++.+..-++..+. |......|+..+|-.|++++|.+-++.+.+.+..... .+|..+|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~-------- 76 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK-------- 76 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH--------
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH--------
Confidence 344556666666666666666555 6666666666666677777776666666665542211 12222222
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHH--HHcCChHHHHHHHHHhccC
Q 038852 333 EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNEC--FKHGKFSEAIETFKKAGTH 385 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~--~~~g~~~~A~~~~~~~~~~ 385 (851)
|+..=.++...+..|.+......-...|+.+. ...|+.++|.++-..+.+.
T Consensus 77 --aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 77 --AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp --HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222334444445544433344444444443 3458888887777666443
|
| >3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A | Back alignment and structure |
|---|
Probab=88.97 E-value=6.4 Score=40.38 Aligned_cols=51 Identities=12% Similarity=-0.115 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCCccc--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 038852 262 LEKANELFDELKQRCLVYD--GVVNATFMEWWFNQGKDKEAMQSYKSLMERNF 312 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~~~d--~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 312 (851)
..+..++-..+...++.+. ..+....|....|.+++..|..+.+++++.+.
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 3444444444444443332 23445556677788888888888888877765
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.82 E-value=4.7 Score=44.03 Aligned_cols=63 Identities=6% Similarity=-0.160 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQA-DIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIE 203 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~ 203 (851)
++..++..|.+.|++++|.++|.++.... +..--...+..+++.+...+++..+...++++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44556666666777777777776665431 1112244555666666666666666666666543
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.73 E-value=5.9 Score=43.75 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038852 317 ATCNTLLEVLLKHEKKEEAQALFEQM 342 (851)
Q Consensus 317 ~~~~~Li~~~~~~g~~~~A~~l~~~m 342 (851)
.++|.+++.|...+.++.|.++..+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 34555555555555555555555544
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.24 E-value=4.6 Score=44.08 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSRQL--GADSLVYNNLISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
++..++..|.+.|++++|.++|.++..... .--...+..+++.+...+|+..+...++++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 556677777777777777777777766422 22235666677777777777777777776653
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.06 E-value=5 Score=33.40 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038852 480 KVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRE 543 (851)
Q Consensus 480 ~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~ 543 (851)
|.-++.+-++.+...++.|+..+..+.+++|.+.+++..|+++|+-++.+- .....+|.+++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 566777788888888999999999999999999999999999999887532 233455666553
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.90 E-value=15 Score=32.35 Aligned_cols=64 Identities=16% Similarity=0.135 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038852 480 KVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRET 544 (851)
Q Consensus 480 ~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~ 544 (851)
|.-+..+-++.+...++.|+..+....+++|.+.+++..|+++|+-++.+- .....+|.+++.-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 455666777888888999999999999999999999999999999887542 2345566665543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=82.92 E-value=10 Score=31.59 Aligned_cols=62 Identities=8% Similarity=0.120 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHH
Q 038852 226 RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFM 288 (851)
Q Consensus 226 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li 288 (851)
+.-+..+-++.+...++.|+..+..+.+++|.+.+|+..|.++|+-++.+.-. ...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~-~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-chhhHHHHH
Confidence 44466667777777778888888888888888888888888888877765433 233444433
|
| >3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=81.79 E-value=7 Score=41.15 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 038852 359 FNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEM--LEEAEKLLREISTKSLS 427 (851)
Q Consensus 359 ~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~ 427 (851)
...++.-|...|+.++|..+++++..- .+. ...+...+..++-+.++ .+...+++..+.+.|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p----~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVP----HFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCT----TCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCC----cch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 456677788888888888888888421 111 23334444445444332 34566677767666544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 851 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-10 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-09 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-09 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-09 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-08 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 3e-07 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 8e-07 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 4e-05 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-04 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 5e-04 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 6e-04 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 0.001 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.002 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 0.004 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.3 bits (142), Expect = 7e-10
Identities = 37/209 (17%), Positives = 78/209 (37%), Gaps = 11/209 (5%)
Query: 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDL 233
V+++NL + +G++ ++ F + + P + Y +L +A AV
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN--FLDAYINLGNVLKEARIFDRAVAA 225
Query: 234 LRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN 293
LS ++V+ NL + G ++ A + + + +
Sbjct: 226 YLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN-LANALKE 283
Query: 294 QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQA 353
+G EA Y + + R + N L + + EEA L+ + L+ P
Sbjct: 284 KGSVAEAEDCYNTAL-RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PE--- 337
Query: 354 VNSDTFNIMVNECFKHGKFSEAIETFKKA 382
+ + + + + GK EA+ +K+A
Sbjct: 338 -FAAAHSNLASVLQQQGKLQEALMHYKEA 365
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.8 bits (138), Expect = 2e-09
Identities = 53/350 (15%), Positives = 112/350 (32%), Gaps = 26/350 (7%)
Query: 112 QSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRA-KRYDDAVALFKYFFDQA- 169
+AGD +AA Q R P ++++++ +R D + A
Sbjct: 7 HREYQAGDFEAAERHCMQLW--RQEPDNTGVLLLLSSIHFQCRRLDRSAHFST----LAI 60
Query: 170 DIVPNIV-SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIG 228
P + +Y+NL N Y + G++ E + +R + P
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 229 EAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFM 288
+ + Q D + + L + + V +
Sbjct: 121 VQ----AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176
Query: 289 EWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQP 348
+ QG+ A+ ++ + + A N L VL + + A A + +
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN-LGNVLKEARIFDRAVAAYLRA------ 229
Query: 349 PNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCEN 408
++ ++ + ++ G AI+T+++A P A Y N+ E
Sbjct: 230 LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA-----YCNLANALKEK 284
Query: 409 EMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVE 458
+ EAE + L + + I++A+ L+ + +E
Sbjct: 285 GSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE 333
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.8 bits (138), Expect = 3e-09
Identities = 38/206 (18%), Positives = 78/206 (37%), Gaps = 9/206 (4%)
Query: 142 CNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIV-SYNNLINTYCDEGKVDEGMNVFRR 200
+ + A +F + PN + +Y NL N + D + + R
Sbjct: 172 WSNLGCVFNAQGEIWLA---IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228
Query: 201 IIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG 260
+ +P + + +L + + G I A+D R + Q Y NL + G
Sbjct: 229 ALSLSP--NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKG 285
Query: 261 NLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCN 320
++ +A + ++ + C + +N QG +EA++ Y+ +E A +
Sbjct: 286 SVAEAEDCYNTALRLCPTHADSLN-NLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHS 343
Query: 321 TLLEVLLKHEKKEEAQALFEQMLDNH 346
L VL + K +EA +++ +
Sbjct: 344 NLASVLQQQGKLQEALMHYKEAIRIS 369
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.6 bits (135), Expect = 5e-09
Identities = 52/352 (14%), Positives = 112/352 (31%), Gaps = 24/352 (6%)
Query: 148 AMYRAKRYDDAVALFKYFFDQADIVP-NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAP 206
Y+A ++ A + Q P N L + + ++D + I+ P
Sbjct: 8 REYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 207 VGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKAN 266
+ + Y +L + + G++ EA++ R L + N +
Sbjct: 65 L--LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 267 ELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVL 326
L+ +Y + + + ++ +A + NF + L V
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF---AVAWSNLGCVF 179
Query: 327 LKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHP 386
+ A FE+ + PN D + + N + F A+ + +A +
Sbjct: 180 NAQGEIWLAIHHFEKAVTLD--PN----FLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233
Query: 387 KSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPD-VTTFRTLIDAYLKVER 445
+ + N+ Y E +++ A R L P + L +A +
Sbjct: 234 PNHAVV-----HGNLACVYYEQGLIDLAIDTYRRAI--ELQPHFPDAYCNLANALKEKGS 286
Query: 446 IDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPK 497
+ +A + +N + + N +G + E + K E P+
Sbjct: 287 VAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 6e-08
Identities = 46/212 (21%), Positives = 81/212 (38%), Gaps = 23/212 (10%)
Query: 108 HNRVQSLIRAGDLDAASYLARQAVFSRIRPT-VFTCNAIIAAMYRAKRYDDAVALFKYFF 166
N G++ A + +AV + P + + + A+ +D AVA +
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAV--TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230
Query: 167 DQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGR 226
+ + + NL Y ++G +D ++ +RR IE P + Y +L + G
Sbjct: 231 SLSPNHAVV--HGNLACVYYEQGLIDLAIDTYRRAIELQP--HFPDAYCNLANALKEKGS 286
Query: 227 IGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNAT 286
+ EA D L + NNL + GN+E+A L+ + + V
Sbjct: 287 VAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE--------VFPE 337
Query: 287 FMEWWFN-------QGKDKEAMQSYKSLMERN 311
F N QGK +EA+ YK + +
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 51.1 bits (120), Expect = 3e-07
Identities = 39/349 (11%), Positives = 91/349 (26%), Gaps = 36/349 (10%)
Query: 110 RVQSLIRAGDLDAASYLARQAV----FSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKY- 164
R Q I G+ D A LA+ A+ + + + ++ ++AL +
Sbjct: 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 77
Query: 165 ---FFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSN------TYR 215
+ S +G + + + R
Sbjct: 78 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 137
Query: 216 HLTKGFVDAGRIGEAVDLLRDMLSRQ-----------LGADSLVYNNLISGFLNLGNLEK 264
+ R+ EA R + L L +
Sbjct: 138 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 197
Query: 265 ANELFDELKQRCLVYDGVVN--ATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTL 322
L K + + ++ ++ N +
Sbjct: 198 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257
Query: 323 LEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382
+ + E A+ + E++ +N + + + + ++ ++ G+ S+A A
Sbjct: 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317
Query: 383 ----GTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEK-----LLREIS 422
F ++ + + + L E E+ +LREI+
Sbjct: 318 LKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREIN 366
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 8e-07
Identities = 51/302 (16%), Positives = 88/302 (29%), Gaps = 26/302 (8%)
Query: 148 AMYRAKRYDDAVALFKYFFDQA-DIVP-NIVSYNNLINTYCDEGKVDEGMNVFRRIIETA 205
+ +AV LF+ A P ++ ++ L T + + ++ RR +E
Sbjct: 28 RRLQEGDLPNAVLLFE----AAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83
Query: 206 PVGPSSNTYRHLTKGFV-----------DAGRIGEAVDLLRDMLSRQLGADSLVYNNLIS 254
P ++ ++ D R A L G L + I
Sbjct: 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143
Query: 255 G-FLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR 313
G L+ + ELF + + FN + + +
Sbjct: 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 203
Query: 314 MTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFS 373
N L L + EEA A + + +Q + + C G
Sbjct: 204 NDYLLWNKLGATLANGNQSEEAVAAYRRA------LELQPGYIRSRYNLGISCINLGAHR 257
Query: 374 EAIETFKKA-GTHPKSK-PFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVT 431
EA+E F +A KS+ P A NI + + + LS +T
Sbjct: 258 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLT 317
Query: 432 TF 433
F
Sbjct: 318 MF 319
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (104), Expect = 4e-05
Identities = 32/300 (10%), Positives = 84/300 (28%), Gaps = 33/300 (11%)
Query: 165 FFDQA-DIVPNIV-SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFV 222
+ QA + ++ S + + + ++++++ T + +
Sbjct: 8 YLRQAEVLKADMTDSKLGPAEVWTSRQALQD---LYQKMLVTDL----EYALDKKVEQDL 60
Query: 223 DAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN--LGNLEKANELFDELKQRCLVYD 280
+ L+ + + +S FL G + + + L
Sbjct: 61 WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR 120
Query: 281 GVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFE 340
+ + Q ++ S L ++ + +A++ +
Sbjct: 121 VKSSQLGII-SNKQTHTSAIVKPQSSSCSYIC---QHCLVHLGDIARYRNQTSQAESYYR 176
Query: 341 QMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNN 400
P+ N +N + G I + ++ PF A N
Sbjct: 177 HAAQLV--PS----NGQPYNQLAILASSKGDHLTTIFYYCRSIA--VKFPFP---AASTN 225
Query: 401 IIARYCENEMLEEAEKLLREISTK-SLSPDVTTFRTLIDAYLKVERIDDALELFNRMVES 459
+ + L +A + E+ TK +S + F + ++ L ++ E
Sbjct: 226 LQ------KALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQ 279
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 3e-04
Identities = 17/130 (13%), Positives = 42/130 (32%), Gaps = 16/130 (12%)
Query: 291 WFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPN 350
+ + A++ Y E + N K + + + + + +
Sbjct: 14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE 73
Query: 351 IQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEM 410
+ + + N FK K+ +AI + K+ ++ +
Sbjct: 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL----------------KK 117
Query: 411 LEEAEKLLRE 420
++AEK+L+E
Sbjct: 118 CQQAEKILKE 127
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 5e-04
Identities = 21/167 (12%), Positives = 55/167 (32%), Gaps = 21/167 (12%)
Query: 292 FNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNI 351
++ K A+ ++ ++ + + C + + + EA+ F + + N
Sbjct: 16 ADKKDWKGALDAFSAVQDPH----SRICFNIGCMYTILKNMTEAEKAFTRSI------NR 65
Query: 352 QAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPF-----------AMDVAGYNN 400
+ + ++ K+ AI+ K+A + N
Sbjct: 66 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYN 125
Query: 401 IIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERID 447
I Y + E ++AE+ L ++ P + ++ K + +
Sbjct: 126 IAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYE 172
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.5 bits (91), Expect = 6e-04
Identities = 16/142 (11%), Positives = 35/142 (24%), Gaps = 20/142 (14%)
Query: 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFF 166
AG + AS A+ P + A +
Sbjct: 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVED-------- 65
Query: 167 DQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGR 226
++++ G+ + + P + L + + R
Sbjct: 66 -------KVLAHTAKAEAEIACGRASAVIAELEALTFEHP--YREPLWTQLITAYYLSDR 116
Query: 227 IGEAVDL---LRDMLSRQLGAD 245
+A+ ++ L+ LG D
Sbjct: 117 QSDALGAYRRVKTTLADDLGID 138
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.0 bits (92), Expect = 0.001
Identities = 29/271 (10%), Positives = 71/271 (26%), Gaps = 22/271 (8%)
Query: 148 AMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPV 207
A + + + + + E + + R +E
Sbjct: 82 PEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER 141
Query: 208 GPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANE 267
YR A E + D L + ++ ++ L +
Sbjct: 142 NFHCWDYRRFVAAQ-AAVAPAEELAFT-DSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199
Query: 268 LFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLL 327
+ L +V F + ++ Y + C +E
Sbjct: 200 QGRLPENVLLKELELVQN-----AFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKST 253
Query: 328 KHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPK 387
+ + E+ +++ + T +++ E ++ F
Sbjct: 254 VLQSELESCKELQELEPEN--KW----CLLTIILLMRALDPLLYEKETLQYFSTLKAV-- 305
Query: 388 SKPFAMDVAGYNNIIARY-CENEML--EEAE 415
P M A +++ +++ EN +L E A+
Sbjct: 306 -DP--MRAAYLDDLRSKFLLENSVLKMEYAD 333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (84), Expect = 0.002
Identities = 15/113 (13%), Positives = 38/113 (33%), Gaps = 12/113 (10%)
Query: 250 NNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNAT------FMEWWFNQGKDKEAMQS 303
+++ +++ +L K + F Q V +T + ++ +
Sbjct: 3 EAVLNELVSVEDLLKFEKKF----QSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVL 58
Query: 304 YKSLMERNFRMTPATCNTLL-EVLLKHEKKEEAQALFEQMLDNHQPPNIQAVN 355
+ L+ + + L + ++ E+A +L +P N QA
Sbjct: 59 LEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ-TEPQNNQAKE 110
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.0 bits (87), Expect = 0.004
Identities = 26/284 (9%), Positives = 76/284 (26%), Gaps = 34/284 (11%)
Query: 149 MYRAKRYDDAVALFKYFF---DQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETA 205
+ RA++ + F F D Y +++ + F + +
Sbjct: 8 LKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQ 67
Query: 206 PVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKA 265
+ +V+A + + + + + +LE A
Sbjct: 68 ---KKAGNEDEAGNTYVEAYK---------------------CFKSGGNSVNAVDSLENA 103
Query: 266 NELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKS----LMERNFRMTPATCNT 321
++F Q + + K + +++ ++
Sbjct: 104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK 163
Query: 322 LLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNEC-FKHGKFSEAIETFK 380
++ + EA ++ +++ + + + + + C A T +
Sbjct: 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223
Query: 381 KAGTHPKSKPFAMDVAGYNNIIARYCEN--EMLEEAEKLLREIS 422
+ + + + + ++I E E L E K
Sbjct: 224 EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 851 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.76 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.72 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.54 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.51 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.51 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.5 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.41 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.4 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.39 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.33 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.29 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.29 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.04 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.02 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.96 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.93 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.88 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.83 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.83 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.82 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.82 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.82 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.74 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.66 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.65 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.59 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.58 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.57 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.56 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.51 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.51 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.48 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.47 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.4 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.34 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.32 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.32 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.32 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.32 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.3 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.3 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.24 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.05 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.03 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.98 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.93 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.85 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.85 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.83 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.83 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.81 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.69 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.59 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.57 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.09 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.05 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.76 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.7 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.32 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.45 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.43 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.95 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.3e-24 Score=234.60 Aligned_cols=384 Identities=15% Similarity=0.112 Sum_probs=243.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 038852 145 IIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA 224 (851)
Q Consensus 145 li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~ 224 (851)
+...+.+.|++++|+++|+++++..+ -+..++..++.+|...|++++|+.+|+++++.+|. +..+|..++.+|.+.
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~l~~~~~~~ 80 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL--LAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHhhhh
Confidence 34455566666666666666655432 24556666666666666666666666666666554 556666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHH
Q 038852 225 GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSY 304 (851)
Q Consensus 225 g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~ 304 (851)
|++++|++.+..+.+.... +...+......+...+....+...+......... ...............+....+...+
T Consensus 81 g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred ccccccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHH
Confidence 6666666666666665443 4444445555555555555555555544443332 3334444455555666666666666
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 038852 305 KSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGT 384 (851)
Q Consensus 305 ~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~ 384 (851)
...+.... .+...+..++..+...|++++|...++++++.. |+ +..++..++.++...|++++|+..|+++..
T Consensus 159 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 231 (388)
T d1w3ba_ 159 LKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PN----FLDAYINLGNVLKEARIFDRAVAAYLRALS 231 (388)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred HHhhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhC--cc----cHHHHHHHhhhhhccccHHHHHHHHHHhHH
Confidence 66665543 234556666777777777777777777776643 32 566777777777777777777777777655
Q ss_pred CCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccc
Q 038852 385 HPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVV 464 (851)
Q Consensus 385 ~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~ 464 (851)
.... +...+..++.++.+.|++++|+.+|+++++... -+..+|..++.+|...|++++|+++|+++...... .
T Consensus 232 ~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 304 (388)
T d1w3ba_ 232 LSPN-----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-H 304 (388)
T ss_dssp HCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-C
T ss_pred Hhhh-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc-c
Confidence 4333 566666777777777777777777777766432 24666777777777777777777777777765533 3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038852 465 VSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRET 544 (851)
Q Consensus 465 ~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~ 544 (851)
...+..+..+|...|++++|+++|+++++.... +..++..+..+|.+.|++++|++.|+++++.. +.+...+..++.+
T Consensus 305 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~ 382 (388)
T d1w3ba_ 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 382 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred chhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 334444667777777777777777777765433 55667777777777777777777777777643 2345666667777
Q ss_pred HHhcCC
Q 038852 545 FGKAGR 550 (851)
Q Consensus 545 ~~~~G~ 550 (851)
|.+.|+
T Consensus 383 ~~~~~D 388 (388)
T d1w3ba_ 383 LKEMQD 388 (388)
T ss_dssp HHHTCC
T ss_pred HHHcCC
Confidence 766664
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.2e-24 Score=236.81 Aligned_cols=386 Identities=17% Similarity=0.143 Sum_probs=332.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 038852 108 HNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCD 187 (851)
Q Consensus 108 ~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~ 187 (851)
..++..+.+.|++++|+.++++++... +.+..++..++.+|.+.|++++|+.+|+++++..+ .+..+|..++.+|.+
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~l~~~~~~ 79 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP--LLAEAYSNLGNVYKE 79 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHhhh
Confidence 356788999999999999999998775 34788999999999999999999999999988643 357889999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038852 188 EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANE 267 (851)
Q Consensus 188 ~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~ 267 (851)
.|++++|++.+..+.+..+. +...+..+.......+....+...+......... +..........+...+....+..
T Consensus 80 ~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
T d1w3ba_ 80 RGQLQEAIEHYRHALRLKPD--FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHH
T ss_pred hccccccccccccccccccc--cccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHH
Confidence 99999999999999998765 6667777777777888888888777777766554 55666677888888899999999
Q ss_pred HHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 038852 268 LFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQ 347 (851)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~ 347 (851)
.+.+....... +...+..++..+...|++++|...++++++.++ .+..+|..++.++...|++++|+..|+++.....
T Consensus 157 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 234 (388)
T d1w3ba_ 157 CYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh
Confidence 99988877655 677888899999999999999999999998864 3567888999999999999999999999988644
Q ss_pred CCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038852 348 PPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLS 427 (851)
Q Consensus 348 ~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 427 (851)
. +...+..++.+|.+.|++++|+.+|+++....+. +..+|..++.++...|++++|++.|+.+... ..
T Consensus 235 ~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~ 302 (388)
T d1w3ba_ 235 N------HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-----FPDAYCNLANALKEKGSVAEAEDCYNTALRL-CP 302 (388)
T ss_dssp T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-----CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CT
T ss_pred h------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CC
Confidence 3 6788999999999999999999999999877665 7888999999999999999999999998875 34
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 038852 428 PDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVV 507 (851)
Q Consensus 428 pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll 507 (851)
.+...+..++.+|.+.|++++|+++|+++++..... ...+..++.+|...|++++|++.|+++++.... +..+|..+.
T Consensus 303 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~lg 380 (388)
T d1w3ba_ 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 380 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHH
T ss_pred ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 578889999999999999999999999999876543 444555899999999999999999999987543 577889999
Q ss_pred HHHHhcCC
Q 038852 508 RGLCNEGL 515 (851)
Q Consensus 508 ~a~~~~g~ 515 (851)
.+|.+.||
T Consensus 381 ~~~~~~~D 388 (388)
T d1w3ba_ 381 NTLKEMQD 388 (388)
T ss_dssp HHHHHTCC
T ss_pred HHHHHcCC
Confidence 99888775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=2.6e-16 Score=166.91 Aligned_cols=244 Identities=14% Similarity=0.101 Sum_probs=145.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 038852 144 AIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD 223 (851)
Q Consensus 144 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~ 223 (851)
..+..+.+.|++++|+.+|+++++..+ .+..+|..++.+|...|++++|+..|+++++.++. +...|..++.+|..
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAENEQELLAISALRRCLELKPD--NQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc--cccccccccccccc
Confidence 345556667777777777777666432 24566666777777777777777777777766655 56666667777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHH
Q 038852 224 AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQS 303 (851)
Q Consensus 224 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l 303 (851)
.|++++|++++++++..... +...+....... ... +.......+..+...+.+.+|++.
T Consensus 100 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~-------------------~~~~~~~~~~~~~~~~~~~~a~~~ 158 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYTPA-YAHLVTPAEEGA-GGA-------------------GLGPSKRILGSLLSDSLFLEVKEL 158 (323)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TGGGCC-----------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhccc-hHHHHHhhhhhh-hhc-------------------ccccchhhHHHHHHhhHHHHHHHH
Confidence 77777777777766654322 110000000000 000 000011111223344556667777
Q ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 304 YKSLMERNFR-MTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 304 ~~~~~~~~~~-~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
|+++++.+.. .+..++..++.++...|++++|+.+|++++... |+ +..+|..++.+|.+.|++++|++.|+++
T Consensus 159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~a 232 (323)
T d1fcha_ 159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PN----DYLLWNKLGATLANGNQSEEAVAAYRRA 232 (323)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cc----cccchhhhhhcccccccchhHHHHHHHH
Confidence 7766665432 345566667777777777777777777776643 32 5667777777777777777777777777
Q ss_pred ccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 383 GTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREIST 423 (851)
Q Consensus 383 ~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 423 (851)
....+. +..+|..++.+|.+.|++++|++.|++.++
T Consensus 233 l~~~p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 233 LELQPG-----YIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhc-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 655443 566677777777777777777777777654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.1e-15 Score=162.10 Aligned_cols=248 Identities=15% Similarity=0.103 Sum_probs=192.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038852 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFL 257 (851)
Q Consensus 178 ~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~ 257 (851)
+...+..+.+.|++++|+.+|+++++.+|. +..+|..++.+|...|++++|+..|+++++.... +...|..++.+|.
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 98 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPK--HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFT 98 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccc
Confidence 345777899999999999999999998877 7889999999999999999999999999998766 7889999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 038852 258 NLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQA 337 (851)
Q Consensus 258 ~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~ 337 (851)
..|++++|.++++++....... ...+....... .. .+.......+..+...+.+.+|++
T Consensus 99 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~-~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~ 157 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYTPAY-AHLVTPAEEGA-GG-------------------AGLGPSKRILGSLLSDSLFLEVKE 157 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTT-GGGCC-----------------------------------CTTHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhHHHhccch-HHHHHhhhhhh-hh-------------------cccccchhhHHHHHHhhHHHHHHH
Confidence 9999999999999988764431 11110000000 00 000111112233445566788999
Q ss_pred HHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHH
Q 038852 338 LFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKL 417 (851)
Q Consensus 338 l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l 417 (851)
.|.+++....... +..++..++.++...|++++|+.+|+++....+. +..+|..++.+|...|++++|++.
T Consensus 158 ~~~~al~~~p~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~ 228 (323)
T d1fcha_ 158 LFLAAVRLDPTSI----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-----DYLLWNKLGATLANGNQSEEAVAA 228 (323)
T ss_dssp HHHHHHHHSTTSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhhccc----ccccchhhHHHHHHHHHHhhhhcccccccccccc-----cccchhhhhhcccccccchhHHHH
Confidence 9998887533221 6778899999999999999999999998776555 788899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 038852 418 LREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVES 459 (851)
Q Consensus 418 ~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 459 (851)
|+++++.. .-+..+|..|+.+|.+.|++++|++.|+++++.
T Consensus 229 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 229 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99988753 235778999999999999999999999999875
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=9.5e-13 Score=138.57 Aligned_cols=198 Identities=14% Similarity=0.087 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG-KVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g-~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
..+++.+..++.+.+++++|+++++++++..+ -+..+|+..+.++...| ++++|++.++++++.++. +..+|+.+
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP--~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~--~~~a~~~~ 118 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA--ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK--NYQVWHHR 118 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCC--CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh--hhhHHHHH
Confidence 56677777777788888888888888887643 35677888888888776 488888888888888776 78888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCC-
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGK- 296 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~- 296 (851)
+.++.+.|++++|+++|+++++.... +..+|..++.++.+.|++++|++.|+++++.++. +...|+.+..++.+.+.
T Consensus 119 ~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 119 RVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred hHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHcccc
Confidence 88888888888888888888888666 7888888888888888888888888888887665 55556555555554443
Q ss_pred -----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 038852 297 -----DKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLD 344 (851)
Q Consensus 297 -----~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 344 (851)
+++|++.+.++++.++ .+...|+.+...+.. ...+++.++++.+++
T Consensus 197 ~~~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQD-RGLSKYPNLLNQLLD 247 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred chhhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence 3445555555554442 244445444443322 223444444444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=8e-12 Score=132.29 Aligned_cols=277 Identities=10% Similarity=-0.001 Sum_probs=173.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHH
Q 038852 145 IIAAMYRAKRYDDAVALFKYFFDQADIVPN---IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS----SNTYRHL 217 (851)
Q Consensus 145 li~~~~~~g~~~~A~~l~~~~~~~~~~~pd---~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~----~~~~~~L 217 (851)
...++...|++++|+++|+++++...-..+ ..+++.++.+|...|++++|+..|+++++..+...+ ..++..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 445556778888888888877764332211 345667777788888888888888877654322222 2345666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----ccchhhHHH
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQ----LGA---DSLVYNNLISGFLNLGNLEKANELFDELKQRCL----VYDGVVNAT 286 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g----~~p---d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~----~~d~~~~~~ 286 (851)
...+...|++..+...+.+++... ... ....+..++..+...|+++.+...+........ ......+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 777778888888888877765421 111 123555677778888888888888877765422 222344555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHH
Q 038852 287 FMEWWFNQGKDKEAMQSYKSLMERNFRM------TPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFN 360 (851)
Q Consensus 287 li~~~~~~g~~~~A~~l~~~~~~~~~~~------~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~ 360 (851)
+...+...+++.++...+.+........ ....+..++..+...|++++|...+++.+..... ........+.
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~ 255 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA--NNHFLQGQWR 255 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT--TCGGGHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccc--cchHHHHHHH
Confidence 5666777788888777777665432111 1234555667777888888888888777653222 1122445666
Q ss_pred HHHHHHHHcCChHHHHHHHHHhccCCCCCCCcc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 361 IMVNECFKHGKFSEAIETFKKAGTHPKSKPFAM-DVAGYNNIIARYCENEMLEEAEKLLREIST 423 (851)
Q Consensus 361 ~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 423 (851)
.++.+|...|++++|+.+|+++.......+..+ ...++..+..+|...|++++|++.|++.++
T Consensus 256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778888888888888888877643211111111 234566677777777777777777776543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=2.4e-12 Score=136.36 Aligned_cols=271 Identities=15% Similarity=0.115 Sum_probs=206.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC----HHHHHHH
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRIRPT----VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN----IVSYNNL 181 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd----~~~~~~L 181 (851)
++..++..|++++|+.++++++......+ ..+++.++.+|...|++++|++.|+++++......+ ..++..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 46778899999999999999987654333 356778889999999999999999998763222222 3466778
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCC---C--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CCHHHHHH
Q 038852 182 INTYCDEGKVDEGMNVFRRIIETAP---V--GP-SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG----ADSLVYNN 251 (851)
Q Consensus 182 i~~~~~~g~~~~A~~l~~~~~~~~~---~--~p-~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~----pd~~~~~~ 251 (851)
...+...|+++.|...+.+++.... . .. ....+..++..+...|+++.+...+.++...... ....++..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 8889999999999999998765321 1 11 1245667888999999999999999998875322 23456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCc------cchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---CHHHHHHH
Q 038852 252 LISGFLNLGNLEKANELFDELKQRCLV------YDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRM---TPATCNTL 322 (851)
Q Consensus 252 Li~~~~~~g~~~~A~~~~~~~~~~~~~------~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~---~~~~~~~L 322 (851)
+...+...+++.++...+.+....... .....+..++..+...|++++|...++...+..... ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 888889999999999998877653211 123456667778899999999999999887654322 34566778
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHc----CCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 038852 323 LEVLLKHEKKEEAQALFEQMLDN----HQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGT 384 (851)
Q Consensus 323 i~~~~~~g~~~~A~~l~~~m~~~----~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~ 384 (851)
+.++...|++++|+.++++++.. +..++ ...++..++.+|...|++++|++.|+++..
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSD----LNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999998743 22221 456788999999999999999999998754
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.7e-12 Score=136.64 Aligned_cols=197 Identities=9% Similarity=0.011 Sum_probs=153.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 038852 109 NRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAK-RYDDAVALFKYFFDQADIVPNIVSYNNLINTYCD 187 (851)
Q Consensus 109 ~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~ 187 (851)
.+...+.+.+.+++|+.++++++... +-+..+|+....++...| ++++|++.|+++++... .+..+|+.++.++.+
T Consensus 48 ~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p--~~~~a~~~~~~~~~~ 124 (315)
T d2h6fa1 48 YFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP--KNYQVWHHRRVLVEW 124 (315)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH--hhhhHHHHHhHHHHh
Confidence 44555667788899999999988765 346778888888888766 48899999988877643 467788888888888
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC------
Q 038852 188 EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGN------ 261 (851)
Q Consensus 188 ~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~------ 261 (851)
.|++++|+++|+++++.++. +..+|..++.++...|++++|++.|+++++.++. +...|+.++.++.+.+.
T Consensus 125 l~~~~eAl~~~~kal~~dp~--n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 125 LRDPSQELEFIADILNQDAK--NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HTCCTTHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHH
T ss_pred hccHHHHHHHHhhhhhhhhc--chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhh
Confidence 99999999999999888776 8888888999999999999999999999888766 78888888887777665
Q ss_pred HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 038852 262 LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR 313 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~ 313 (851)
+++|++.+.++++.++. +...|..+...+.. ...+++.+.++.+++....
T Consensus 202 ~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~ 251 (315)
T d2h6fa1 202 LEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPS 251 (315)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTT
T ss_pred hHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCC
Confidence 57888888888887765 66677766665443 4457777777777765543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.41 E-value=8.5e-13 Score=140.29 Aligned_cols=217 Identities=11% Similarity=-0.033 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHH
Q 038852 227 IGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG--NLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSY 304 (851)
Q Consensus 227 ~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g--~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~ 304 (851)
+++|+.+|+++++...+ +...|..++.++...+ ++++|+..+.++++.+.......+..+..++...+++++|+..+
T Consensus 89 ~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~ 167 (334)
T d1dcea1 89 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 167 (334)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHH
Confidence 44555555555554433 4444544444444433 24555555555554433311111222333444445555555555
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 038852 305 KSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGT 384 (851)
Q Consensus 305 ~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~ 384 (851)
+.+++.++ .+...|+.++.++.+.|++++|+..+..+++. ......++..+...+..+++...+.+...
T Consensus 168 ~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 168 DSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV----------LLKELELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH----------HHHHHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh----------HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 55444443 23445555555555555555554444433321 00111222333445555556666555544
Q ss_pred CCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 038852 385 HPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGL 461 (851)
Q Consensus 385 ~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~ 461 (851)
..+. +...+..++..+...+++++|...+.+..+... -+..+|..++.+|...|++++|+++|+++++.++
T Consensus 237 ~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP 307 (334)
T d1dcea1 237 GRAE-----PLFRCELSVEKSTVLQSELESCKELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 307 (334)
T ss_dssp SCCC-----CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred hCcc-----hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 3333 233344445555556666666666666654421 1345566666667777777777777777766653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=4.1e-12 Score=129.16 Aligned_cols=96 Identities=15% Similarity=-0.003 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKG 220 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~ 220 (851)
+|..++.+|.+.|++++|++.|+++++..+ .+..+|+.++.+|.+.|++++|++.|+++++.++. +..+|..++.+
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~ 114 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT--YNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCC--CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh--hhhhHHHHHHH
Confidence 344444444445555555555554444322 23444444444555555555555555555444433 33344444444
Q ss_pred HHHcCCHHHHHHHHHHHHhc
Q 038852 221 FVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 221 ~~~~g~~~~A~~l~~~m~~~ 240 (851)
|...|++++|++.|+++++.
T Consensus 115 ~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhh
Confidence 44455555555555444444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.39 E-value=1.3e-12 Score=138.75 Aligned_cols=265 Identities=8% Similarity=-0.010 Sum_probs=186.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----------HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038852 153 KRYDDAVALFKYFFDQADIVPNIVSYNNLINTY----------CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFV 222 (851)
Q Consensus 153 g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~----------~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~ 222 (851)
+..++|+++++++++..+ -+...|+.....+ ...|++++|+.+|+++++.++. +...|..++.++.
T Consensus 43 ~~~~~al~~~~~~l~~~P--~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk--~~~~~~~~~~~~~ 118 (334)
T d1dcea1 43 ELDESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK--SYGTWHHRCWLLS 118 (334)
T ss_dssp CCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC--cHHHHHHhhHHHH
Confidence 334778888887776432 2334454433332 2334577888888888888766 7777777777777
Q ss_pred HcC--CHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHH
Q 038852 223 DAG--RIGEAVDLLRDMLSRQLGADSLVY-NNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKE 299 (851)
Q Consensus 223 ~~g--~~~~A~~l~~~m~~~g~~pd~~~~-~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~ 299 (851)
..+ ++++|+..+.++++.... +...+ ..+..++...+++++|+..++++++.+.. +...|..+..++.+.|++++
T Consensus 119 ~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~ 196 (334)
T d1dcea1 119 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD 196 (334)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCC
T ss_pred HhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHH
Confidence 655 478888888888887555 45554 34556777788888888888888887765 77788888888888888887
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHH
Q 038852 300 AMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETF 379 (851)
Q Consensus 300 A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~ 379 (851)
|...++.+.+... ....++..+...+..+++...+...+..... +...+..++..+...+++++|+..|
T Consensus 197 A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~ 265 (334)
T d1dcea1 197 SGPQGRLPENVLL-----KELELVQNAFFTDPNDQSAWFYHRWLLGRAE------PLFRCELSVEKSTVLQSELESCKEL 265 (334)
T ss_dssp SSSCCSSCHHHHH-----HHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC------CSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHhHH-----HHHHHHHHHHHhcchhHHHHHHHHHHHhCcc------hhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 7766665554432 1122344455667777888888888775432 3445667778888889999999999
Q ss_pred HHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 038852 380 KKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPD-VTTFRTLIDAYL 441 (851)
Q Consensus 380 ~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~Ll~~~~ 441 (851)
.++....+. +..+|..++.+|...|++++|++.|+++++. .|+ ...|..|...+.
T Consensus 266 ~~~~~~~p~-----~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 266 QELEPENKW-----CLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHCTTCHH-----HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred HHHHhhCch-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHh
Confidence 998766544 6778888999999999999999999999875 454 455666655554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=2.9e-11 Score=122.68 Aligned_cols=222 Identities=13% Similarity=0.006 Sum_probs=162.7
Q ss_pred ChhHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038852 154 RYDDAVALFKYFFDQADIVP--NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAV 231 (851)
Q Consensus 154 ~~~~A~~l~~~~~~~~~~~p--d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~ 231 (851)
+.+.|+..+++++......+ ...+|..++.+|.+.|++++|++.|+++++.++. +..+|+.++.+|.+.|++++|+
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~--~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC--CHHHHhhhchHHHHHHHHHHhh
Confidence 34455666666655433222 2457888899999999999999999999999877 8889999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 038852 232 DLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN 311 (851)
Q Consensus 232 ~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~ 311 (851)
+.|+++++.... +..++..++.+|...|++++|++.|+++++.... +......+..++.+.+..+.+..+........
T Consensus 92 ~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 92 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 169 (259)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred hhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence 999999998766 7788999999999999999999999999987654 55555555566667776666666666555543
Q ss_pred CCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCC
Q 038852 312 FRMTPATCNTLLEVLLKH----EKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPK 387 (851)
Q Consensus 312 ~~~~~~~~~~Li~~~~~~----g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~ 387 (851)
... ..++ ++..+... +..+.+...+...... .++ ...+|..++.+|...|++++|++.|++++...+
T Consensus 170 ~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 170 KEQ--WGWN-IVEFYLGNISEQTLMERLKADATDNTSL--AEH----LSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp CCS--THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hhh--hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc--Ccc----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 322 1222 23333222 2234444444433331 111 356788899999999999999999999988888
Q ss_pred C
Q 038852 388 S 388 (851)
Q Consensus 388 ~ 388 (851)
.
T Consensus 241 ~ 241 (259)
T d1xnfa_ 241 H 241 (259)
T ss_dssp T
T ss_pred C
Confidence 7
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.29 E-value=6.3e-10 Score=116.19 Aligned_cols=186 Identities=9% Similarity=0.085 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038852 263 EKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQM 342 (851)
Q Consensus 263 ~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m 342 (851)
++|..+|+++++.....+..++..++..+.+.|++++|..+|+++++........+|..++..+.+.|+.++|.++|+++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34444444444332222333444444444444444444444444444333333344555555555566666666666666
Q ss_pred HHcCCCCCCCccCHHHHHHHHHHH-HHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 343 LDNHQPPNIQAVNSDTFNIMVNEC-FKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREI 421 (851)
Q Consensus 343 ~~~~~~p~~~~~~~~~~~~L~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 421 (851)
++.... +...|...+... ...|+.+.|..+|+.+....+. +...|..++..+...|+++.|..+|++.
T Consensus 161 l~~~~~------~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-----~~~~w~~y~~~~~~~g~~~~aR~~fe~a 229 (308)
T d2onda1 161 REDART------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-----IPEYVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HTSTTC------CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHhCCC------cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 553322 333444444332 2245566666666666554333 5566666666666666666666666666
Q ss_pred HhCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 038852 422 STKS-LSPD--VTTFRTLIDAYLKVERIDDALELFNRMVES 459 (851)
Q Consensus 422 ~~~g-~~pd--~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 459 (851)
++.. ..++ ...|...+..-...|+.+.+.++++++.+.
T Consensus 230 i~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 230 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5542 2222 345666666666667777777777666654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.29 E-value=5.8e-10 Score=116.44 Aligned_cols=224 Identities=10% Similarity=-0.017 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH--------------cCChHHHHHHHHHhccC-CCCCCCccCHHH
Q 038852 333 EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK--------------HGKFSEAIETFKKAGTH-PKSKPFAMDVAG 397 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~--------------~g~~~~A~~~~~~~~~~-~~~~~~~~d~~~ 397 (851)
+.+..+|++++..... +..+|...+..+.. .+..++|..+|+++... .+. +...
T Consensus 33 ~Rv~~vyerAl~~~~~------~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~-----~~~l 101 (308)
T d2onda1 33 KRVMFAYEQCLLVLGH------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-----NMLL 101 (308)
T ss_dssp HHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-----CHHH
T ss_pred HHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCC-----CHHH
Confidence 4456667777664222 55666665554432 33457889999998754 222 6778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH
Q 038852 398 YNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELIT 477 (851)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~ 477 (851)
|..++..+...|++++|..+|+++++........+|..++..+.+.|++++|+++|+++++.+......+.......+..
T Consensus 102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~ 181 (308)
T d2onda1 102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 181 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 88899999999999999999999987644334568999999999999999999999999988765554444433333445
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHHhcCCHHHH
Q 038852 478 KGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGV-GI--TPALQDFVRETFGKAGRGEEI 554 (851)
Q Consensus 478 ~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~-~~--~~~~~~~L~~~~~~~G~~~eA 554 (851)
.|+.+.|..+|+++++.... +...|..++..+.+.|++++|+.+|+++++... .+ ...++...+......|+.+.+
T Consensus 182 ~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~ 260 (308)
T d2onda1 182 SKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred ccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 68999999999999986333 678899999999999999999999999987542 22 346788888888899999999
Q ss_pred HHHHHhhhhcCCCC
Q 038852 555 ERVLNADRWGYAAP 568 (851)
Q Consensus 555 ~~ll~~~~~~~~~~ 568 (851)
.++++++.+.++..
T Consensus 261 ~~~~~r~~~~~~~~ 274 (308)
T d2onda1 261 LKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCccc
Confidence 99999998888754
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.04 E-value=1.1e-09 Score=113.19 Aligned_cols=107 Identities=9% Similarity=0.013 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH-cCChHHHHHHHHHhccCCCCCCC-ccC
Q 038852 317 ATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK-HGKFSEAIETFKKAGTHPKSKPF-AMD 394 (851)
Q Consensus 317 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~-~~d 394 (851)
.+|..++.+|.+.|++++|++.|+++++.....+.......++..++.+|.. .|++++|+++|+++.......+. ...
T Consensus 78 ~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~ 157 (290)
T d1qqea_ 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 3566667777777777777777776654211110000013344555555544 47777777777665322111000 001
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 395 VAGYNNIIARYCENEMLEEAEKLLREIST 423 (851)
Q Consensus 395 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 423 (851)
..+|..++.+|...|++++|+++|+++..
T Consensus 158 ~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 158 NKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 22344455555555555555555555444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.02 E-value=1.7e-08 Score=103.96 Aligned_cols=207 Identities=14% Similarity=0.082 Sum_probs=115.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-C----HHHHHHH
Q 038852 182 INTYCDEGKVDEGMNVFRRIIETAPVGPS----SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA-D----SLVYNNL 252 (851)
Q Consensus 182 i~~~~~~g~~~~A~~l~~~~~~~~~~~p~----~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p-d----~~~~~~L 252 (851)
+.+|...|++++|++.|+++.+......+ ..+|..++.+|.+.|++++|++.|+++++..... + ..++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 45677778888888888777653211111 2456666777777777777777666655421110 0 1233333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHH
Q 038852 253 ISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR-----MTPATCNTLLEVLL 327 (851)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~-----~~~~~~~~Li~~~~ 327 (851)
+..|.. ..|++++|+++|+++++.... ....++..++.+|.
T Consensus 124 ~~~~~~----------------------------------~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~ 169 (290)
T d1qqea_ 124 GEILEN----------------------------------DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA 169 (290)
T ss_dssp HHHHHH----------------------------------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhHhh----------------------------------HHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Confidence 333322 134444444444444322100 01245777888999
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCCCccC-HHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHH
Q 038852 328 KHEKKEEAQALFEQMLDNHQPPNIQAVN-SDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYC 406 (851)
Q Consensus 328 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~-~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~ 406 (851)
..|++++|+++|+++............. ...+..++.++...|+++.|...|+++.+..+.............++.++.
T Consensus 170 ~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~ 249 (290)
T d1qqea_ 170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN 249 (290)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH
T ss_pred HcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHH
Confidence 9999999999999988753322111111 234566677788899999999999998766443221112334455666655
Q ss_pred h--cCCHHHHHHHHHHHH
Q 038852 407 E--NEMLEEAEKLLREIS 422 (851)
Q Consensus 407 ~--~g~~~~A~~l~~~m~ 422 (851)
. .+.+++|+..|+.+.
T Consensus 250 ~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 250 EGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp TTCTTTHHHHHHHHTTSS
T ss_pred hcCHHHHHHHHHHHHHHh
Confidence 4 345777777776554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=1.7e-08 Score=96.91 Aligned_cols=130 Identities=16% Similarity=0.085 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKG 220 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~ 220 (851)
.|+. +..+...|++++|++.|+++ ..++..+|..++.+|...|++++|++.|+++++.++. +...|..++.+
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~--~~~a~~~~g~~ 79 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH--LAVAYFQRGML 79 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh--hhhhHHHHHHH
Confidence 3443 44567888899998888765 2357778888888899999999999999999888776 77888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 038852 221 FVDAGRIGEAVDLLRDMLSRQLG--------------A-DSLVYNNLISGFLNLGNLEKANELFDELKQRCLV 278 (851)
Q Consensus 221 ~~~~g~~~~A~~l~~~m~~~g~~--------------p-d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~ 278 (851)
|.+.|++++|++.|++++..... . ...++..++.+|.+.|++++|.+.|+++++....
T Consensus 80 ~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 80 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 98999999999888888753211 0 1245566777777777777777777777765544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.93 E-value=6.3e-07 Score=90.32 Aligned_cols=113 Identities=17% Similarity=0.138 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH----cCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHH
Q 038852 331 KKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK----HGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYC 406 (851)
Q Consensus 331 ~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~ 406 (851)
....++..+......+ +...+..|+..|.. ..+...+..+++.+.+.. +..++..|...|.
T Consensus 125 ~~~~a~~~~~~~~~~~--------~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g-------~~~A~~~lg~~y~ 189 (265)
T d1ouva_ 125 DFKKAVEYFTKACDLN--------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-------DSPGCFNAGNMYH 189 (265)
T ss_dssp CHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHH
T ss_pred hhHHHHHHhhhhhccc--------ccchhhhhhhhhccCCCcccccccchhhhhcccccc-------ccccccchhhhcc
Confidence 3445555555444421 34455555555554 234445555555554321 4455555555554
Q ss_pred h----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC
Q 038852 407 E----NEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLK----VERIDDALELFNRMVESGL 461 (851)
Q Consensus 407 ~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~----~g~~~~A~~~~~~m~~~~~ 461 (851)
. ..++++|+.+|++..+.| +...+..|+.+|.+ ..+.++|+++|+++.+.|.
T Consensus 190 ~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 190 HGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 4 456777777777777664 55666667777664 3367778888888777663
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.88 E-value=1.9e-06 Score=86.66 Aligned_cols=220 Identities=16% Similarity=0.143 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCCCHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCD----EGKVDEGMNVFRRIIETAPVGPSSNTY 214 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~----~g~~~~A~~l~~~~~~~~~~~p~~~~~ 214 (851)
...+..|...+.+.+|+++|+++|+++.+. -|..++..|..+|.. ..++..|...++...+.+ +....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~----~~~a~ 73 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGC 73 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----ccchh
Confidence 445566666667777777777777777543 255666666666665 456777777777766543 44455
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCccchhhHHH
Q 038852 215 RHLTKGFVD----AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN----LGNLEKANELFDELKQRCLVYDGVVNAT 286 (851)
Q Consensus 215 ~~Li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~----~g~~~~A~~~~~~~~~~~~~~d~~~~~~ 286 (851)
..|+..+.. ..+.+.|+..|+...+.|. ......++..+.. ..+...+...+.+....+ +...+..
T Consensus 74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~ 147 (265)
T d1ouva_ 74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 147 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhh
Confidence 555555443 3466777777777766543 2333334433332 334556666665554432 3445555
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCCCccCHHH
Q 038852 287 FMEWWFN----QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLK----HEKKEEAQALFEQMLDNHQPPNIQAVNSDT 358 (851)
Q Consensus 287 li~~~~~----~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~ 358 (851)
|...|.. ..+...+..+++...+.+ +...+..|...|.. ..++++|+.+|+++.+.| +...
T Consensus 148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--------~~~a 216 (265)
T d1ouva_ 148 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--------NGGG 216 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--------CHHH
T ss_pred hhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc--------CHHH
Confidence 5555554 345566666666666554 33555556666654 457777888887777654 4567
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHhc
Q 038852 359 FNIMVNECFK----HGKFSEAIETFKKAG 383 (851)
Q Consensus 359 ~~~L~~~~~~----~g~~~~A~~~~~~~~ 383 (851)
+..|+.+|.+ ..++++|+++|+++.
T Consensus 217 ~~~LG~~y~~G~g~~~n~~~A~~~~~kAa 245 (265)
T d1ouva_ 217 CFNLGAMQYNGEGVTRNEKQAIENFKKGC 245 (265)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHH
Confidence 7777777764 336777777777764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=6e-08 Score=84.74 Aligned_cols=93 Identities=14% Similarity=0.175 Sum_probs=50.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG 260 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g 260 (851)
.+..+.+.|++++|+.+|+++++.+|. +...|..++.+|...|++++|++.|+++++.+.. +...|..++.++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc--chhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHcc
Confidence 344455555555555555555555544 4555555555555555555555555555555443 5555555555555555
Q ss_pred CHHHHHHHHHHHHhcC
Q 038852 261 NLEKANELFDELKQRC 276 (851)
Q Consensus 261 ~~~~A~~~~~~~~~~~ 276 (851)
++++|+..|+++++..
T Consensus 86 ~~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHE 101 (117)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 5555555555555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=6.1e-08 Score=89.86 Aligned_cols=95 Identities=13% Similarity=0.164 Sum_probs=58.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
..+..|.+.|++++|+..|+++++.++. +...|..++.+|...|++++|+..|+++++.... +..+|..++.+|...
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchh--hhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHc
Confidence 3444555666666666666666666554 5566666666666666666666666666665444 555666666666666
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 038852 260 GNLEKANELFDELKQRCL 277 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~~ 277 (851)
|++++|++.|+++++...
T Consensus 92 g~~~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKP 109 (159)
T ss_dssp TCHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 666666666666665543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=7.1e-08 Score=92.49 Aligned_cols=132 Identities=14% Similarity=0.043 Sum_probs=112.0
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
.+++....+...|+++.|++.|+++ ..++..+|..++.+|.+.|++++|++.|+++++.+. .+...|..++.+|
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp--~~~~a~~~~g~~~ 80 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HLAVAYFQRGMLY 80 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh--hhhhhHHHHHHHH
Confidence 4567788899999999999999875 356788899999999999999999999999998754 4688999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGP--------------SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG 243 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p--------------~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~ 243 (851)
.+.|++++|++.|++++....... ...++..++.++.+.|++++|++.|+++++....
T Consensus 81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999987532111 1356778899999999999999999999887554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=8.1e-08 Score=83.86 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=82.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038852 143 NAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFV 222 (851)
Q Consensus 143 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~ 222 (851)
...+..+.+.|++++|+.+|+++++..+ .+...|..++.+|...|++++|+..|+++++.++. +...|..++.++.
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD--WGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC--cchhhhhcccccccccccccccchhhhhHHHhccc--hhhHHHHHHHHHH
Confidence 3456667788888888888888877643 46677888888888888888888888888888766 7778888888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038852 223 DAGRIGEAVDLLRDMLSRQLGADSLVYNNLIS 254 (851)
Q Consensus 223 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~ 254 (851)
..|++++|+..|+++++..+. +..++..+.+
T Consensus 83 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 113 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQN 113 (117)
T ss_dssp HTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 888888888888888877555 5555555444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=7.4e-08 Score=89.26 Aligned_cols=121 Identities=14% Similarity=0.143 Sum_probs=95.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038852 142 CNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGF 221 (851)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~ 221 (851)
+...+..|.+.|++++|+..|+++++... .+...|..++.+|...|++++|+..|+++++.++. +..+|..++.+|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~--~~~a~~~~g~~~ 88 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccch--hhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc--chHHHHHHHHHH
Confidence 33456678899999999999999988653 46888999999999999999999999999998876 888999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH--HhcCCHHHHHH
Q 038852 222 VDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF--LNLGNLEKANE 267 (851)
Q Consensus 222 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~--~~~g~~~~A~~ 267 (851)
...|++++|++.|+++++.... +...+..+..+. ...+.+++|..
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988655 666655554443 22333444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.74 E-value=3.4e-08 Score=95.21 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038852 173 PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNL 252 (851)
Q Consensus 173 pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L 252 (851)
|++..+...+..|.+.|++++|+..|+++++.+|. +..+|..++.+|.+.|++++|+..|+++++.... +..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~--~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHH
Confidence 45555666677777777777777777777777665 6667777777777777777777777777766544 56677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 038852 253 ISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
+.+|...|++++|+..|+++++.
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 77777777777777777766653
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.66 E-value=4.1e-08 Score=94.62 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=79.5
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 137 PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRH 216 (851)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~ 216 (851)
|+...+...+..|++.|++++|+..|+++++..+ .+..+|+.++.+|.+.|++++|+..|+++++.+|. +..+|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p--~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~--~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--CHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC--cHHHHHH
Confidence 4555666777888888888888888888877643 46777888888888888888888888888877665 6778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 217 LTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 217 Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
++.+|...|++++|+..|+++++.
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888888888888888888887764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=5.8e-07 Score=84.05 Aligned_cols=113 Identities=9% Similarity=0.060 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 038852 142 CNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-------------IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVG 208 (851)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-------------~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~ 208 (851)
+...+..+++.|++++|+..|+++++..+.... ..+|+.++.+|.+.|++++|+..++++++.+|.
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~- 94 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN- 94 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc-
Confidence 344555666666777776666666553222111 134555666666667777777777766666655
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038852 209 PSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFL 257 (851)
Q Consensus 209 p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~ 257 (851)
+..+|..++.+|...|++++|+..|+++++..+. |..+...+..+..
T Consensus 95 -~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 95 -NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQ 141 (170)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHH
T ss_pred -chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 6666666666666777777777777766665443 5554444444433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=1.6e-08 Score=112.70 Aligned_cols=115 Identities=7% Similarity=-0.094 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHH
Q 038852 225 GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSY 304 (851)
Q Consensus 225 g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~ 304 (851)
+.++.|+..|.+.....+. +...+..++..+.+.|+.++|...+++.+.... ..++..++.++...|++++|+..|
T Consensus 100 ~~Y~~ai~~l~~~~~l~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVDLP-CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC---QHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHTC--------------------------------CCHHHHHHH---HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCChh-hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHcccHHHHHHHH
Confidence 3344444444333333222 334444455555555555555554444433211 123334444444444444444444
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 038852 305 KSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLD 344 (851)
Q Consensus 305 ~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 344 (851)
+++++.++. +...|+.|+.++...|+..+|+..|.+++.
T Consensus 176 ~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 176 RHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444322 223444444444444444444444444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=1.6e-08 Score=112.76 Aligned_cols=228 Identities=8% Similarity=-0.045 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 157 DAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRD 236 (851)
Q Consensus 157 ~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~ 236 (851)
+|++.|+++++...- ...++..+..+|...|++++| |++++..++. ....++.. ...-...+..+++.++.
T Consensus 4 eA~q~~~qA~~l~p~--~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~--~a~~~~~e--~~Lw~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD--MTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE--YALDKKVE--QDLWNHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHHHGG--GTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH--HHHHHTHH--HHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--CHHHHhhHHHHHHHHchHHHH---HHHHHHcChh--hHHHHhHH--HHHHHHHHHHHHHHHHH
Confidence 688888888764321 234577788888888888876 7777765422 11122211 11111235567777777
Q ss_pred HHhcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 038852 237 MLSRQLGADSLVY--NNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRM 314 (851)
Q Consensus 237 m~~~g~~pd~~~~--~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~ 314 (851)
..+....++..-. ..+...+...+.++.|+..+......... +...+..+...+.+.|+.++|...++..+..+.
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-- 151 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLP-CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-- 151 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHH--
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChh-hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--
Confidence 7765433332221 11222233345555665555544443332 456677778888888888888888887766543
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccC
Q 038852 315 TPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMD 394 (851)
Q Consensus 315 ~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d 394 (851)
..++..|+.++...+++++|+..|+++++. .|+ +...|+.|+.+|...|+..+|+..|.+++..... .
T Consensus 152 -~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~----~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~-----~ 219 (497)
T d1ya0a1 152 -QHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPS----NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP-----F 219 (497)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC-----C
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCC----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----C
Confidence 256777888888888999999999888874 444 6788888988888889999898888888765433 5
Q ss_pred HHHHHHHHHHHHhc
Q 038852 395 VAGYNNIIARYCEN 408 (851)
Q Consensus 395 ~~~~~~li~~~~~~ 408 (851)
..++..|...+.+.
T Consensus 220 ~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 220 PAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66777777666543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.57 E-value=2.6e-07 Score=79.79 Aligned_cols=89 Identities=16% Similarity=0.074 Sum_probs=46.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG 260 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g 260 (851)
++..+.+.|++++|+..|+++++.++. +..+|..++.++.+.|++++|+..|+++++.... +..+|..|+.+|...|
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc--cchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCC
Confidence 344445555555555555555555444 4455555555555555555555555555554433 4455555555555555
Q ss_pred CHHHHHHHHHHH
Q 038852 261 NLEKANELFDEL 272 (851)
Q Consensus 261 ~~~~A~~~~~~~ 272 (851)
++++|++.|++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 555555555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.3e-06 Score=81.57 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-------------SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-------------~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~ 242 (851)
..+...+..+.+.|++++|+..|.++++..+.... ..+|+.++.+|.+.|++++|+..++++++.+.
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p 93 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 93 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence 34667788899999999999999999887543221 13455566666666666666666666666554
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHH
Q 038852 243 GADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFME 289 (851)
Q Consensus 243 ~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~ 289 (851)
. +..+|..++.+|...|++++|+..|+++++.++. +..+...+..
T Consensus 94 ~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~ 138 (170)
T d1p5qa1 94 N-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAV 138 (170)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHH
T ss_pred c-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4 5666666666666666666666666666665443 3444433333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.51 E-value=5.5e-07 Score=77.66 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=64.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 038852 145 IIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA 224 (851)
Q Consensus 145 li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~ 224 (851)
++..+.+.|++++|+..|+++++..+ -+..+|..++.++.+.|++++|+..|+++++.+|. +..+|..|+.+|...
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccccc--ccchhhhhhhhhhhhhhhHHHhhcccccccccccc--cccchHHHHHHHHHC
Confidence 45556677777777777777766543 25667777777777777777777777777777665 667777777777777
Q ss_pred CCHHHHHHHHHHHH
Q 038852 225 GRIGEAVDLLRDML 238 (851)
Q Consensus 225 g~~~~A~~l~~~m~ 238 (851)
|++++|++.|++.+
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 77777777777654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.51 E-value=2e-05 Score=81.16 Aligned_cols=136 Identities=16% Similarity=0.182 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 137 PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRH 216 (851)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~ 216 (851)
+|..-...++..|.+.|.++.|..+|..+ . | |..++.+|.+.+++..|.+++.+. + +..+|..
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~-~------d---~~rl~~~~v~l~~~~~avd~~~k~---~----~~~~~k~ 74 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-S------N---FGRLASTLVHLGEYQAAVDGARKA---N----STRTWKE 74 (336)
T ss_dssp C----------------CTTTHHHHHHHT-T------C---HHHHHHHHHTTTCHHHHHHHHHHH---T----CHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhC-C------C---HHHHHHHHHhhccHHHHHHHHHHc---C----CHHHHHH
Confidence 44555556777777888888888888765 1 2 667777778888888887776654 2 5667888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcC
Q 038852 217 LTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQG 295 (851)
Q Consensus 217 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g 295 (851)
+...+.+......| .+.......+......++..|-..|.+++...+++....... .+..+++.++.+|++.+
T Consensus 75 ~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~-~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 75 VCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLER-AHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT-CCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCc-cchHHHHHHHHHHHHhC
Confidence 88888777666543 222233334566666777888888888888888877664422 25556677777776653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.48 E-value=1.7e-06 Score=79.19 Aligned_cols=108 Identities=13% Similarity=0.109 Sum_probs=60.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 038852 142 CNAIIAAMYRAKRYDDAVALFKYFFDQADIVP--------------NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPV 207 (851)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~p--------------d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~ 207 (851)
+...+..+++.|+|.+|+..|.++++...... ...+|+.++.+|.+.|++++|++.++++++.+|.
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~ 99 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 99 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch
Confidence 33344455566666666666666554221111 1234555666666666666666666666666554
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038852 208 GPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNL 252 (851)
Q Consensus 208 ~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L 252 (851)
+..+|..++.+|...|++++|+..|+++++..+. |..+...+
T Consensus 100 --~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l 141 (153)
T d2fbna1 100 --NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSY 141 (153)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred --hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 5666666666666666666666666666665443 44444333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.47 E-value=2.5e-06 Score=79.36 Aligned_cols=115 Identities=7% Similarity=0.052 Sum_probs=68.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 038852 142 CNAIIAAMYRAKRYDDAVALFKYFFDQADIVP-------------NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVG 208 (851)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~p-------------d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~ 208 (851)
+...+..+.+.|++++|+..|++++....... ...+|+.+..+|.+.|++++|+..++++++.++.
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~- 96 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA- 96 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccc-
Confidence 44455556666666666666666543211111 1123555666667777777777777777776655
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 209 PSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 209 p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
+..+|..++.+|...|++++|++.|+++++..+. +..++..+..+..+.
T Consensus 97 -~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 97 -NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQKKA 145 (168)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Confidence 6666777777777777777777777777665444 555555444444333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=1.1e-06 Score=76.96 Aligned_cols=97 Identities=19% Similarity=0.118 Sum_probs=64.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG---RIGEAVDLLRDMLSRQLGAD-SLVYNNLISG 255 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g---~~~~A~~l~~~m~~~g~~pd-~~~~~~Li~~ 255 (851)
.|++.+...+++++|++.|++++..++. +..++..++.++++.+ ++++|+++|++++..+..++ ..+|..|+.+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~--~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSV--SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 4566666777777777777777777665 6667777777776544 34457777777776544322 2356667777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCc
Q 038852 256 FLNLGNLEKANELFDELKQRCLV 278 (851)
Q Consensus 256 ~~~~g~~~~A~~~~~~~~~~~~~ 278 (851)
|.+.|++++|+++|+++++.++.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~ 104 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQ 104 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhhHHHHHHHHHHHHhCcC
Confidence 77777777777777777766543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=4.2e-06 Score=73.83 Aligned_cols=96 Identities=10% Similarity=0.194 Sum_probs=56.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--C----HHHHHH
Q 038852 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA--D----SLVYNN 251 (851)
Q Consensus 178 ~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p--d----~~~~~~ 251 (851)
+..++..|...|++++|++.|+++++.++. +..+|..++.+|.+.|++++|++.|+++++..... . ..+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT--NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 445566666666666666666666666554 55666666666666666666666666665532110 0 134555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 252 LISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 252 Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
++..+...+++++|+++|++.+..
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc
Confidence 556666666666666666655543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.32 E-value=5.6e-06 Score=75.58 Aligned_cols=112 Identities=9% Similarity=-0.026 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGP---SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNL 252 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p---~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L 252 (851)
..+...+..+.+.|++.+|+..|.++++..+... +...+. ....+ ...+|..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~------------------~~~~~------~~~~~~Nl 73 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD------------------KKKNI------EISCNLNL 73 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH------------------HHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH------------------hhhhH------HHHHHhhH
Confidence 3466677788899999999999999887532211 111000 00000 11244555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 038852 253 ISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF 312 (851)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 312 (851)
+.+|.+.|++++|++.++++++.+.. +..+|..++.+|...|++++|+..|+.+++.++
T Consensus 74 a~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P 132 (153)
T d2fbna1 74 ATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNP 132 (153)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 55555555555555555555555443 445555555555555555555555555555543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.32 E-value=8.4e-06 Score=75.63 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-------------SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-------------~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~ 242 (851)
..+...+..+.+.|++++|+..|++++...+...+ ..+|+.++.+|.+.|++++|+..++++++...
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 34667788889999999999999888764322111 12234444555555555555555555555443
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038852 243 GADSLVYNNLISGFLNLGNLEKANELFDELKQRC 276 (851)
Q Consensus 243 ~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~ 276 (851)
. +..+|..++.+|...|++++|++.|++++..+
T Consensus 96 ~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 96 A-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred c-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3 45555555555555555555555555555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=1.8e-06 Score=75.48 Aligned_cols=99 Identities=10% Similarity=0.052 Sum_probs=58.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 108 HNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAK---RYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 108 ~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
.+++..++..+++++|++.|++++..+ +.+..++..++.++.+.+ ++++|+++|++++..........+|..|+.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 355666666777777777777766654 335566666666665533 3445677776665432110012356666667
Q ss_pred HHHcCChHHHHHHHHHHHHhCCC
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPV 207 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~ 207 (851)
|.+.|++++|++.|+++++.+|.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~ 104 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQ 104 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhhHHHHHHHHHHHHhCcC
Confidence 77777777777777777766554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=4.2e-06 Score=73.86 Aligned_cols=99 Identities=13% Similarity=0.286 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-----HHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-----SNTYR 215 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-----~~~~~ 215 (851)
.+..++..+.+.|+|++|+..|+++++..+ .+..+|..++.+|...|++++|+..|+++++.++..++ ..+|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 355677788888888888888888887644 46778888888888889999998888888876543222 23667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 038852 216 HLTKGFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 216 ~Li~~~~~~g~~~~A~~l~~~m~~~g 241 (851)
.++.++...+++++|+++|++.+...
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 77778888888899999888887653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.30 E-value=0.00013 Score=74.84 Aligned_cols=140 Identities=13% Similarity=0.137 Sum_probs=95.8
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
+....+..|.+.|.++.|..++..+- -|..++..|.+.++++.|.+++.+. -+..+|..+...+
T Consensus 16 d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~~~~~l 79 (336)
T d1b89a_ 16 HIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFAC 79 (336)
T ss_dssp -------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHHHHHHH
Confidence 44556677889999999999998643 3667888888999999999998876 3678999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKA 265 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 265 (851)
.+......|.-+ ... ...+......++..|-..|.+++.+.+|+..+... ..+...++.++.+|++.+. ++.
T Consensus 80 ~~~~e~~la~i~-----~~~-~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~kl 151 (336)
T d1b89a_ 80 VDGKEFRLAQMC-----GLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QKM 151 (336)
T ss_dssp HHTTCHHHHHHT-----TTT-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HHH
T ss_pred HhCcHHHHHHHH-----HHH-hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HHH
Confidence 988776554221 111 22366667789999999999999999999887653 3477888999999988643 343
Q ss_pred HHHH
Q 038852 266 NELF 269 (851)
Q Consensus 266 ~~~~ 269 (851)
++.+
T Consensus 152 ~e~l 155 (336)
T d1b89a_ 152 REHL 155 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.30 E-value=2.4e-06 Score=79.54 Aligned_cols=77 Identities=12% Similarity=0.082 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHH
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWW 291 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~ 291 (851)
.|..++.+|.+.|++++|+..|+++++.... +..+|..++.+|...|++++|++.|+++++.... +..+...+..+.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~ 155 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4444444455555555555555555544333 4444445555555555555555555554444333 333333333333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.24 E-value=6.6e-06 Score=76.44 Aligned_cols=63 Identities=13% Similarity=-0.006 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 038852 248 VYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN 311 (851)
Q Consensus 248 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~ 311 (851)
.|..++.+|.+.|++++|+..|+++++.+.. +...|..++.+|.+.|++++|++.|+++++.+
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3444444444455555555555544444333 34444444444555555555555555444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.05 E-value=6e-05 Score=70.32 Aligned_cols=125 Identities=9% Similarity=0.081 Sum_probs=75.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYC 186 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~ 186 (851)
+......+...|++++|...|.+++... +.... ......+.+...-..+.. .....+..++.++.
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~-----~~~~a~~~la~~~~ 78 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVE-----DKVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 3445566777777777777777776432 11100 000010111111111101 02345677777888
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCCHHH
Q 038852 187 DEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS-----RQLGADSLV 248 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~~ 248 (851)
+.|++++|+..++++++.+|. +...|..++.+|.+.|+.++|++.|+++.+ .|+.|...+
T Consensus 79 ~~g~~~~Al~~~~~al~~~P~--~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEHPY--REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HCCCchHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 888888888888888888776 777888888888888888888888877643 466666544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.03 E-value=1.9e-05 Score=71.17 Aligned_cols=86 Identities=6% Similarity=0.101 Sum_probs=47.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----------cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038852 152 AKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCD----------EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGF 221 (851)
Q Consensus 152 ~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~----------~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~ 221 (851)
.+.|++|+..|+.+++..+ .+..++..++.+|.. .+.+++|+..|+++++.+|. +..+|..++.+|
T Consensus 10 ~~~fe~A~~~~e~al~~~P--~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~--~~~a~~~lG~~y 85 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSNP--LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK--KDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhCC--cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch--hhHHHhhHHHHH
Confidence 3444555555555544322 233444444444432 23346677777777777665 666777777776
Q ss_pred HHcCC-----------HHHHHHHHHHHHhcC
Q 038852 222 VDAGR-----------IGEAVDLLRDMLSRQ 241 (851)
Q Consensus 222 ~~~g~-----------~~~A~~l~~~m~~~g 241 (851)
...|+ +++|++.|+++++..
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 65442 455666666666553
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.98 E-value=1.2e-05 Score=72.61 Aligned_cols=90 Identities=8% Similarity=0.069 Sum_probs=71.2
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA----------GRIGEAVDLLRDMLSRQLGADSLVYNNLIS 254 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~----------g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~ 254 (851)
|-+.+.+++|+..|+++++.+|. +..+|..++.+|... +.+++|++.|+++++.++. +..+|..++.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~--~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCc--chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHH
Confidence 45667799999999999999888 888999999888754 4568899999999998776 8888999999
Q ss_pred HHHhcCC-----------HHHHHHHHHHHHhcCC
Q 038852 255 GFLNLGN-----------LEKANELFDELKQRCL 277 (851)
Q Consensus 255 ~~~~~g~-----------~~~A~~~~~~~~~~~~ 277 (851)
+|...|+ +++|.+.|+++++...
T Consensus 84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P 117 (145)
T d1zu2a1 84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 117 (145)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHcccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence 8877653 4566666666665543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.93 E-value=3.2e-05 Score=70.52 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=30.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038852 146 IAAMYRAKRYDDAVALFKYFFDQADIVPN----------IVSYNNLINTYCDEGKVDEGMNVFRRIIE 203 (851)
Q Consensus 146 i~~~~~~g~~~~A~~l~~~~~~~~~~~pd----------~~~~~~Li~~~~~~g~~~~A~~l~~~~~~ 203 (851)
+..+.+.|+|++|+..|+++++.....++ ..+|+.++.+|...|++++|++.++++++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~ 83 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 83 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhh
Confidence 33444556666666666666543222221 23455555555555555555555555543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.85 E-value=0.00019 Score=66.83 Aligned_cols=116 Identities=10% Similarity=0.034 Sum_probs=73.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038852 142 CNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGF 221 (851)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~ 221 (851)
....+..+...|++++|+..|.+++....-.. +....+.+.+...-..+... ....+..++.++
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~-----------l~~~~~~~w~~~~r~~l~~~-----~~~a~~~la~~~ 77 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGPV-----------LDDLRDFQFVEPFATALVED-----KVLAHTAKAEAE 77 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSST-----------TGGGTTSTTHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccc-----------cccCcchHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 34445566778888888888888776422111 00111111111111122111 234677788888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 222 VDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 222 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
.+.|++++|+..++++++.... +...|..++.+|.+.|+.++|++.|+++.+
T Consensus 78 ~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 78 IACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8888888888888888887665 778888888888888888888888887643
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.85 E-value=1.7e-05 Score=79.12 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=38.9
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
.+.|++++|+..|++.++.+|. |...+..|+.+|+..|++++|++.|+.+++.... +...+..+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~--d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll 74 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPK--DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLV 74 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 3456666666666666666555 5566666666666666666666666666655433 334444444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.83 E-value=0.00012 Score=66.41 Aligned_cols=98 Identities=19% Similarity=0.172 Sum_probs=61.3
Q ss_pred HHHHH--HHHHHHcCChHHHHHHHHHHHHhCCCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Q 038852 177 SYNNL--INTYCDEGKVDEGMNVFRRIIETAPVGPS----------SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ--- 241 (851)
Q Consensus 177 ~~~~L--i~~~~~~g~~~~A~~l~~~~~~~~~~~p~----------~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g--- 241 (851)
+|..+ +..+...|++++|+..|+++++..+..++ ..+|+.++.+|...|++++|++.++++++..
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 55666778888888888888876544333 3467777777777777777777777766421
Q ss_pred --CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 242 --LGAD-----SLVYNNLISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 242 --~~pd-----~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
..++ ..+++.++.+|...|++++|++.|+++++
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 12345556666666666666666666554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=0.032 Score=59.36 Aligned_cols=398 Identities=10% Similarity=-0.000 Sum_probs=206.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCChhHHHHHHHHHHHcCCCCCCH-HHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMY--RAKRYDDAVALFKYFFDQADIVPNI-VSYNNLIN 183 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~l~~~~~~~~~~~pd~-~~~~~Li~ 183 (851)
.+..+..+++.|+..++..+...+. +. | ..-|......-. .....++...++++ .+-.|-. ..-...+.
T Consensus 9 ~y~~a~~a~~~~~~~~~~~~~~~L~--dy-p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~----~p~~P~~~~lr~~~l~ 80 (450)
T d1qsaa1 9 RYAQIKQAWDNRQMDVVEQMMPGLK--DY-P-LYPYLEYRQITDDLMNQPAVTVTNFVRA----NPTLPPARTLQSRFVN 80 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSGGGT--TS-T-THHHHHHHHHHHTGGGCCHHHHHHHHHH----CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHhhhc--CC-C-CHHHHHHHHHHhccccCCHHHHHHHHHH----CCCChhHHHHHHHHHH
Confidence 4567788999999999888777753 21 2 223322222111 23355555544443 2222211 12234456
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--
Q 038852 184 TYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGN-- 261 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~-- 261 (851)
.+.+.+++++.+..+. . ...+...-..++.+....|+.++|.+.+..+-..|.. ....+..+...+.+.|.
T Consensus 81 ~L~~~~~w~~~~~~~~----~--~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~~~lt 153 (450)
T d1qsaa1 81 ELARREDWRGLLAFSP----E--KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQD 153 (450)
T ss_dssp HHHHTTCHHHHHHHCC----S--CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSC
T ss_pred HHHhccCHHHHHHhcc----C--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhcCCCC
Confidence 6778888776554432 1 2235666667788888999999998888877666533 22233344444444333
Q ss_pred ----------------HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 038852 262 ----------------LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEV 325 (851)
Q Consensus 262 ----------------~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~ 325 (851)
+..|..++..+-. ........++.+...-..+... . .. ...+......+..+
T Consensus 154 ~~~~~~R~~~~l~~~~~~~a~~l~~~l~~----~~~~~~~a~~~l~~~p~~~~~~---~----~~-~~~~~~~~~~~~~~ 221 (450)
T d1qsaa1 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPA----DYQTIASAIISLANNPNTVLTF---A----RT-TGATDFTRQMAAVA 221 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCG----GGHHHHHHHHHHHHCGGGHHHH---H----HH-SCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHhhCCh----hHHHHHHHHHHHHhChHhHHHH---H----hc-CCCChhhhHHHHHH
Confidence 2222222221110 0111122222221111111111 0 00 11122222222222
Q ss_pred HHh--CCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHH----HHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHH
Q 038852 326 LLK--HEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMV----NECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYN 399 (851)
Q Consensus 326 ~~~--~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~ 399 (851)
+.+ ..+.+.|..++......... +...+..+. ..+...+..+.+..++........ +.....
T Consensus 222 l~rla~~d~~~a~~~l~~~~~~~~~------~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~ 289 (450)
T d1qsaa1 222 FASVARQDAENARLMIPSLAQAQQL------NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ------STSLIE 289 (450)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC------CHHHHH
T ss_pred HHHHhccChhHHHHHHHhhhhcccc------cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc------chHHHH
Confidence 222 24667777777776554322 222222222 222334556777777766654322 333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcC
Q 038852 400 NIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKG 479 (851)
Q Consensus 400 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g 479 (851)
.++......+++..+...++.|... ......-..-++.++...|+.++|..+|..+... . .+|..|.. .+.|
T Consensus 290 w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~--~fYG~LAa--~~Lg 361 (450)
T d1qsaa1 290 RRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R--GFYPMVAA--QRIG 361 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C--SHHHHHHH--HHTT
T ss_pred HHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---C--ChHHHHHH--HHcC
Confidence 4445556677888888777776542 2223444456777788888888888888877642 1 24443322 1222
Q ss_pred CHHHHHHHHHHHhhCC--CCC-CHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038852 480 KVAECAPILTKMGEKD--PKP-DFL---IYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEE 553 (851)
Q Consensus 480 ~~~~A~~ll~~m~~~~--~~p-d~~---~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~e 553 (851)
..-. +.... ... ... .-...+..+...|+..+|...+..+.+. .+......++.+..+.|.++.
T Consensus 362 ~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~ 431 (450)
T d1qsaa1 362 EEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDL 431 (450)
T ss_dssp CCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhH
Confidence 1000 00000 000 010 1112356677899999999999988753 467777788999999999999
Q ss_pred HHHHHHhh
Q 038852 554 IERVLNAD 561 (851)
Q Consensus 554 A~~ll~~~ 561 (851)
|+....+.
T Consensus 432 aI~a~~~~ 439 (450)
T d1qsaa1 432 SVQATIAG 439 (450)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99888775
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.81 E-value=1.6e-05 Score=79.41 Aligned_cols=123 Identities=10% Similarity=0.008 Sum_probs=78.7
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 038852 150 YRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGE 229 (851)
Q Consensus 150 ~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~ 229 (851)
.+.|++++|+..|++.++..+ .|...+..|+.+|+..|++++|++.|+.+++.++. +...+..+...+...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~P--~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~--~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASP--KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE--YLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhccccHH
Confidence 456888888888888877543 46777888888888888888888888888887655 55566666555554444443
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038852 230 AVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRC 276 (851)
Q Consensus 230 A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~ 276 (851)
+...+......+..++...+...+..+...|+.++|.++++++.+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 33222221111111223444455666777788888888888776653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=0.00014 Score=59.72 Aligned_cols=79 Identities=14% Similarity=0.201 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC----CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADI----VPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSN 212 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~----~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~ 212 (851)
+...+..++..+.+.|++++|+..|+++++.... ..+ ..+++.|+.+|.+.|++++|++.|+++++.+|. +..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~--~~~ 81 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE--HQR 81 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC--CHH
Confidence 3445566777777888888888888777653211 112 456777777788888888888888888777766 555
Q ss_pred HHHHHH
Q 038852 213 TYRHLT 218 (851)
Q Consensus 213 ~~~~Li 218 (851)
+++.+.
T Consensus 82 a~~Nl~ 87 (95)
T d1tjca_ 82 ANGNLK 87 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655553
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=0.071 Score=56.54 Aligned_cols=207 Identities=10% Similarity=0.011 Sum_probs=125.7
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCHHHHHHHH----HHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHc
Q 038852 294 QGKDKEAMQSYKSLMERNFRMTPATCNTLL----EVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH 369 (851)
Q Consensus 294 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li----~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~ 369 (851)
..+.+.|..++......... +...+..+. ..+...+..+.+..++........ +......++......
T Consensus 227 ~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~w~~~~al~~ 298 (450)
T d1qsaa1 227 RQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-------STSLIERRVRMALGT 298 (450)
T ss_dssp HHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred ccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc-------chHHHHHHHHHHHHc
Confidence 35778888888877665432 222222222 223345667788888877766433 344555555566778
Q ss_pred CChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHH
Q 038852 370 GKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVER-IDD 448 (851)
Q Consensus 370 g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~-~~~ 448 (851)
+++..+...|+.+...... ......-+++++...|+.++|..+|..+... ++ .|..|... +.|. +.-
T Consensus 299 ~~~~~~~~~~~~l~~~~~~-----~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa~--~Lg~~~~~ 366 (450)
T d1qsaa1 299 GDRRGLNTWLARLPMEAKE-----KDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAAQ--RIGEEYEL 366 (450)
T ss_dssp TCHHHHHHHHHHSCTTGGG-----SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHHH--HTTCCCCC
T ss_pred CChHHHHHHHHhcCccccc-----HHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHHH--HcCCCCCC
Confidence 8999999999887433221 4455566888899999999999999988743 33 23333222 2221 000
Q ss_pred HHHHHHHHHHcCCcc--chhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038852 449 ALELFNRMVESGLRV--VVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQM 526 (851)
Q Consensus 449 A~~~~~~m~~~~~~~--~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m 526 (851)
.. ......... ...-....+..+...|...+|...|..+.+. .+......+.....+.|.++.|+....+.
T Consensus 367 ~~----~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 367 KI----DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CC----CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred Cc----CCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 00 000000000 0000112456677899999999999888764 25667777888889999999999887766
Q ss_pred H
Q 038852 527 M 527 (851)
Q Consensus 527 ~ 527 (851)
.
T Consensus 440 ~ 440 (450)
T d1qsaa1 440 K 440 (450)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=0.00026 Score=58.13 Aligned_cols=78 Identities=13% Similarity=0.079 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGP-----SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLV 248 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p-----~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~ 248 (851)
+...+..++..+.+.|++++|+..|+++++..+..+ ...+++.|+.+|.+.|++++|++.|+++++..+. +..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHH
Confidence 344456778888888888888888888876532211 2456777888888888888888888888887655 5555
Q ss_pred HHHH
Q 038852 249 YNNL 252 (851)
Q Consensus 249 ~~~L 252 (851)
++.+
T Consensus 83 ~~Nl 86 (95)
T d1tjca_ 83 NGNL 86 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.09 E-value=0.004 Score=54.22 Aligned_cols=81 Identities=14% Similarity=0.028 Sum_probs=40.1
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cC
Q 038852 189 GKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD----AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN----LG 260 (851)
Q Consensus 189 g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~----~g 260 (851)
.+.++|+++|++..+.+ +...+..|...|.. ..++++|+++|++..+.| +......|..+|.. ..
T Consensus 37 ~~~~~a~~~~~~aa~~g----~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~ 109 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 109 (133)
T ss_dssp SCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred cCHHHHHHHHhhhhccc----chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCC
Confidence 44555555555555443 44444555554443 234555555555555543 33444445444443 23
Q ss_pred CHHHHHHHHHHHHhcC
Q 038852 261 NLEKANELFDELKQRC 276 (851)
Q Consensus 261 ~~~~A~~~~~~~~~~~ 276 (851)
|.++|+++|++..+.|
T Consensus 110 d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4555555555554443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.05 E-value=0.0042 Score=54.08 Aligned_cols=110 Identities=10% Similarity=0.019 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 038852 190 KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN----LGNLEKA 265 (851)
Q Consensus 190 ~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~----~g~~~~A 265 (851)
|+++|+++|++..+.+ +...+..|+. ....+.++|+++|++..+.| +...+..|...|.. ..|.++|
T Consensus 8 d~~~A~~~~~kaa~~g----~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN----EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTT----CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCC----Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHH
Confidence 5566666666666554 2223333332 23356677777777777664 45555556666554 3456666
Q ss_pred HHHHHHHHhcCCccchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhc
Q 038852 266 NELFDELKQRCLVYDGVVNATFMEWWFN----QGKDKEAMQSYKSLMERN 311 (851)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~ 311 (851)
+++|++..+.+ +......|..+|.. ..+.++|+++|++..+.|
T Consensus 79 ~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 79 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 66666665544 22333334444433 234455555555544443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.76 E-value=0.099 Score=43.26 Aligned_cols=141 Identities=14% Similarity=0.097 Sum_probs=89.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcC
Q 038852 291 WFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHG 370 (851)
Q Consensus 291 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g 370 (851)
+.-.|..++..+++.+..... +..-||.+|--....-+-+....+++.+-+. + |. ..++
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-F-------Dl----------s~C~ 70 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F-------DL----------DKCQ 70 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S-------CG----------GGCS
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh-c-------Cc----------hhhh
Confidence 344567777777776666543 2245565665555556666666666655331 1 11 1455
Q ss_pred ChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038852 371 KFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDAL 450 (851)
Q Consensus 371 ~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~ 450 (851)
++...+..|-.+.. +...+...++.+...|+-|.-.++++++.+. -+++......++.+|.+.|+..++-
T Consensus 71 Nlk~vv~C~~~~n~---------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~n 140 (161)
T d1wy6a1 71 NLKSVVECGVINNT---------LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDAT 140 (161)
T ss_dssp CTHHHHHHHHHTTC---------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHhcc---------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHH
Confidence 55555555555422 3444566667777788888888888887663 4567777888888888888888888
Q ss_pred HHHHHHHHcCCc
Q 038852 451 ELFNRMVESGLR 462 (851)
Q Consensus 451 ~~~~~m~~~~~~ 462 (851)
+++.++.+.|++
T Consensus 141 ell~~ACe~G~K 152 (161)
T d1wy6a1 141 TLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHHhHH
Confidence 888888887753
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.70 E-value=0.041 Score=45.58 Aligned_cols=144 Identities=10% Similarity=0.045 Sum_probs=103.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 038852 111 VQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK 190 (851)
Q Consensus 111 l~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~ 190 (851)
+..++-.|..++..+++.+...+. +..-||.+|--....-+-+....+++.+-+... ...+++
T Consensus 9 AKk~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FD--------------ls~C~N 71 (161)
T d1wy6a1 9 AKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD--------------LDKCQN 71 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC--------------GGGCSC
T ss_pred HHHHHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcC--------------chhhhc
Confidence 456778899999999999988765 677888888777777888887877777633221 123455
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFD 270 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~ 270 (851)
+...+..+-.+- . +...+...+..+...|+-+.-.++++++.+. -.++......++.+|.+.|+..++-+++.
T Consensus 72 lk~vv~C~~~~n----~--~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~ 144 (161)
T d1wy6a1 72 LKSVVECGVINN----T--LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLI 144 (161)
T ss_dssp THHHHHHHHHTT----C--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhc----c--hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 555554443331 1 3345566677778888888888888887774 45578888888888999999999988888
Q ss_pred HHHhcCCc
Q 038852 271 ELKQRCLV 278 (851)
Q Consensus 271 ~~~~~~~~ 278 (851)
++-++|.+
T Consensus 145 ~ACe~G~K 152 (161)
T d1wy6a1 145 EACKKGEK 152 (161)
T ss_dssp HHHHTTCH
T ss_pred HHHHHhHH
Confidence 88888765
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.32 E-value=0.14 Score=42.74 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038852 210 SSNTYRHLTKGFVDAG---RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCL 277 (851)
Q Consensus 210 ~~~~~~~Li~~~~~~g---~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~ 277 (851)
+..+-...+.++++.. ++++++.+|+++.+.+..-....+..|+.+|.+.|++++|+++++.+++..+
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP 104 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 104 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3444444444444432 3345555555555443221123444555555555555555555555555433
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.45 E-value=0.42 Score=39.78 Aligned_cols=69 Identities=10% Similarity=0.021 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 038852 244 ADSLVYNNLISGFLNLG---NLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF 312 (851)
Q Consensus 244 pd~~~~~~Li~~~~~~g---~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 312 (851)
+...+-...+.++++.. ++++++.+|+++.+.+..-....+..|..+|.+.|++++|+++++.+++..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP 104 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 104 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 35555555666666543 4567778888777655432235666677777777777777777777777664
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.43 E-value=2.8 Score=32.65 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038852 480 KVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRE 543 (851)
Q Consensus 480 ~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~ 543 (851)
|.-++.+-++.+...++.|+..+..+.+++|.+.+++..|+++|+-++.+. ..+..+|.+++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 566777778888888999999999999999999999999999999887532 223456666543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.95 E-value=10 Score=29.41 Aligned_cols=51 Identities=10% Similarity=0.186 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038852 226 RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRC 276 (851)
Q Consensus 226 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~ 276 (851)
+.-++.+-++.+...++.|+..+..+.+++|.+.+|+..|.++|+.++.+.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~ 71 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 71 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 444566667777777778888888888888888888888888888777553
|