Citrus Sinensis ID: 038916

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Protein Sequence
MSGRNRGPPLPMKGAPPVGLPLPVHEPQFGRGLGPMPPHPALLEEMRETQFGMGPRPLPPTHPAIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRARAAAAVGNPGASFNTNYGTPEAGYPSNPYPVSYSMNPVQAGAETYPHYGPGPGSWGAYDMQRAQGHR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
msgrnrgpplpmkgappvglplpvhepqfgrglgpmpphpaLLEEMREtqfgmgprplppthpaIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYadsfrmdkdVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRARAAAAvgnpgasfntnygtpeagypsnpypvsysmnpvqagaetyphygpgpgswgaydMQRAQGHR
Flexible Loop (DISEMBL)
msgrnrgpplpmkgappvgLPLPVHEPQFGRGLGPMPPHPALLEEMRETQFGMGPRPLPPTHPAIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKgyaenyehgqvmEKKLISMARELEKLRAEIANSEKRARAAaavgnpgasfnTNYGTPEAGYPSNPYPVSYSMNPVQAGAETYPHYGPGPGSWGAYDMQRAQGHR
Low Complexity Region (SEG)
MSGRNRGPPLPMKGAPPVGLPLPVHEPQFGRGLGPMPPHPALLEEMRETQFGMGPRPLPPTHPAIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKraraaaaVGNPGASFNTNYGTPEAGYPSNPYPVSYSMNPVQAGAETYPHYGPGPGSWGAYDMQRAQGHR
Disordered region (IsUnstruct)
****************************************************************IIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVK**LQRARAAIEFDKKGYAENYEHG***********************************************************************************************
Disordered Region (DISOPRED)
************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
*********LPMKGAPPVGLPLPVHEPQFGRGLGPMPPHPALLEEMRETQFGMGPRPLPPTHPAIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIAN**********VGNPGASFNTNYGTPEAGYPSNPYPVSYSMNPVQAGAETYPHYGPGPGSWGAYDMQRAQGHR
Disordered Region (DISPRO)
****************PVGLPLPVHEPQFGRGLGPMPPHPALLEEMRETQFGMGPRPLPPTHPAIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRARAAAAVGNPGASFNTNYGTPEAGYPSNPYPVSYSMNPVQAGAET********GS*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGRNRGPPLPMKGAPPVGLPLPVHEPQFGRGLGPMPPHPALLEEMRETQFGMGPRPLPPTHPAIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGxxxxxxxxxxxxxxxxxxxxxxxxxxxxQQxxxxxxxxxxxxxxxxxxxxxxxxxxxxYAENYEHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGNPGASFNTNYGTPEAGYPSNPYPVSYSMNPVQAGAETYPHYGPGPGSWGAYDMQRAQGHR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
359386140	302	structural maintenance of chromosomes do	0.956	0.950	0.904	1e-157
255580849	315	conserved hypothetical protein [Ricinus	0.996	0.949	0.727	1e-128
449456555	313	PREDICTED: uncharacterized protein LOC10	0.99	0.948	0.686	1e-109
356557114	324	PREDICTED: uncharacterized protein LOC10	0.986	0.913	0.631	1e-106
359493976	310	PREDICTED: uncharacterized protein LOC10	0.966	0.935	0.637	1e-104
356525610	329	PREDICTED: uncharacterized protein LOC10	0.986	0.899	0.612	6e-99
224061391	295	predicted protein [Populus trichocarpa]	0.906	0.922	0.675	8e-95
297740591	383	unnamed protein product [Vitis vinifera]	0.963	0.754	0.616	2e-91
225462466	307	PREDICTED: uncharacterized protein LOC10	0.963	0.941	0.616	9e-91
357451035	319	hypothetical protein MTR_2g060900 [Medic	0.983	0.924	0.570	2e-88

>gi|359386140|gb|AEV43359.1| structural maintenance of chromosomes domain-containing protein [Citrus sinensis]

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 285/315 (90%), Positives = 286/315 (90%), Gaps = 28/315 (8%)

Query: 1   MSGRNRGPPLPMKGAPPVGLPLPVHEPQFGRGLGPMPPHPALLEEMRETQFGMGPRPLPP 60
           MSGRNRGPPLPMKGAPPVGLPLPVHEPQFGRGLGPMPPHPALLEEMRETQFGMGPRPLPP
Sbjct: 1   MSGRNRGPPLPMKGAPPVGLPLPVHEPQFGRGLGPMPPHPALLEEMRETQFGMGPRPLPP 60

Query: 61  THPAIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKD 120
           THPAIIEE LAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKD
Sbjct: 61  THPAIIEERLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKD 120

Query: 121 VQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT--------------- 165
           VQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT               
Sbjct: 121 VQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTGQAQMMSQDLVRLTA 180

Query: 166 DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAE 225
           DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAE
Sbjct: 181 DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAE 240

Query: 226 IANSEKRARAAAAVGNPGASFNTNYGTPEAGYPSNPYPVSYSMNPVQAGAETYPHYGPGP 285
           IANSEKRARAAAAVGN             +GYPSNPYPVSYSMNPVQAGAETYPHYGPGP
Sbjct: 241 IANSEKRARAAAAVGN-------------SGYPSNPYPVSYSMNPVQAGAETYPHYGPGP 287

Query: 286 GSWGAYDMQRAQGHR 300
           GSWGAYDMQRAQGHR
Sbjct: 288 GSWGAYDMQRAQGHR 302

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580849|ref|XP_002531244.1| conserved hypothetical protein [Ricinus communis] gi|223529163|gb|EEF31141.1| conserved hypothetical protein [Ricinus communis]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/316 (72%), Positives = 265/316 (83%), Gaps = 17/316 (5%)

Query: 1   MSGRNRGPPLPMKGAPPVG-LPLPVHEPQFGRGLGPMPPHPALLEEMRETQFGMGPRPLP 59
           MSGRNRGPPLPMKG  P G +P  +HEP FGRGLGPMPPHPALLEE+RE+QFG+ PR LP
Sbjct: 1   MSGRNRGPPLPMKGVTPHGGMPPVIHEPHFGRGLGPMPPHPALLEELRESQFGLDPRRLP 60

Query: 60  PTHPAIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDK 119
           P HPA++EE LA QHQDIQGLLADNQR +ATHVALKQELE A +EL+RM HY +S  ++K
Sbjct: 61  P-HPAVMEERLAVQHQDIQGLLADNQRFSATHVALKQELEAAHHELERMAHYGNSLHVEK 119

Query: 120 DVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT-------------- 165
           DVQMRE+++KS++LE DLR VEAMR+EL  V+ADIKEL+ VRQELT              
Sbjct: 120 DVQMRELHEKSMRLEADLREVEAMRAELHHVRADIKELSEVRQELTGRVQMMTQDLARYN 179

Query: 166 -DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRA 224
            DLQQVPA+KA+IE++KQ+LQ ARAAI+++KKGYAENYEHGQVMEKKLI+MARELEKLRA
Sbjct: 180 ADLQQVPAVKADIESMKQQLQHARAAIDYEKKGYAENYEHGQVMEKKLIAMARELEKLRA 239

Query: 225 EIANSEKRARAAAAVGNPGASFNTNYGTPEAGYPSNPYPVSYSMNPVQAGAETYPHYGPG 284
           EIAN+EKRARAA AVGNPGA++N NYG  EAGY  NPYP+ Y MNPVQA AE+YP YG G
Sbjct: 240 EIANAEKRARAAVAVGNPGATYNANYGNSEAGYAGNPYPIGYGMNPVQANAESYPQYGVG 299

Query: 285 PGSWGAYDMQRAQGHR 300
           PGSWGAYDMQRAQGHR
Sbjct: 300 PGSWGAYDMQRAQGHR 315

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456555|ref|XP_004146014.1| PREDICTED: uncharacterized protein LOC101204235 [Cucumis sativus] gi|449503648|ref|XP_004162107.1| PREDICTED: uncharacterized LOC101204235 [Cucumis sativus]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/316 (68%), Positives = 248/316 (78%), Gaps = 19/316 (6%)

Query: 1   MSGRNRGPPLPMKGAPPVGLPLPVHEPQFGRGLGPMPPHPALLEEMRETQFGMGPRPLPP 60
           MSGRNRGPP+P+ G P  GLP PV EP F RGLGP+P HP LLEE+RE+Q+GM P  LPP
Sbjct: 1   MSGRNRGPPIPLNGVPHGGLP-PVREPPFARGLGPLP-HPVLLEEIRESQYGMHPVSLPP 58

Query: 61  THPAIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKD 120
            HPAIIEE LAAQHQDIQGLL DNQRLAATHVALKQELE AQ+ELQRM H ADS   ++D
Sbjct: 59  -HPAIIEERLAAQHQDIQGLLLDNQRLAATHVALKQELEAAQHELQRMAHVADSLHAERD 117

Query: 121 VQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT--------------- 165
           +QMRE+Y+KSV+LEVD+RGVE MR+ELL+V +D+KELTA RQEL                
Sbjct: 118 IQMRELYEKSVRLEVDMRGVETMRAELLQVHSDVKELTAARQELNGQVQAMTQDLTRITA 177

Query: 166 DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAE 225
           DLQQVPAL+ EIE VKQEL RAR AIE++KKGYAENYEHGQVMEKKL+SMARELEKLRAE
Sbjct: 178 DLQQVPALRGEIETVKQELHRARVAIEYEKKGYAENYEHGQVMEKKLVSMARELEKLRAE 237

Query: 226 IANSEKRAR-AAAAVGNPGASFNTNYGTPEAGYPSNPYPVSYSMNPVQAGAETYPHYGPG 284
           +AN+EKRA  +AA  GN  A +  NYG  +AGY  NPY  +Y +N VQ+G E YP YGPG
Sbjct: 238 VANAEKRAHASAAVGGNAAAGYGANYGNADAGYGGNPYSTNYGLNSVQSGTEGYPPYGPG 297

Query: 285 PGSWGAYDMQRAQGHR 300
              WGAYD+QRAQGHR
Sbjct: 298 SVPWGAYDIQRAQGHR 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557114|ref|XP_003546863.1| PREDICTED: uncharacterized protein LOC100779805 [Glycine max]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/328 (63%), Positives = 248/328 (75%), Gaps = 32/328 (9%)

Query: 1   MSGRNRGPPLPMKGAPP--VGLPLPVHEPQFG-------RGLGPMPPHPA-LLEEMRETQ 50
           MSGRNRG PLP    PP   GL  P+H+  +G         +GP+PPHP  LLE+ R++Q
Sbjct: 1   MSGRNRGQPLP----PPHAAGLSPPLHDQLYGARAHHHHHLVGPVPPHPHHLLEDFRDSQ 56

Query: 51  FGMGP-RPLP-PTHPA-IIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQR 107
            G+GP R  P P HPA IIEE LAAQHQDIQGLL DNQRLAATHVALKQELE A++ELQR
Sbjct: 57  LGLGPPRGGPIPLHPAAIIEERLAAQHQDIQGLLGDNQRLAATHVALKQELEAARHELQR 116

Query: 108 MVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQEL--- 164
           + H+ DS R D + +M E++DK+ QLE +L G EA R+ELL+V+AD+KELTAVRQ+L   
Sbjct: 117 VAHFRDSLRADTEARMPELHDKAAQLEAELCGAEAARTELLQVRADVKELTAVRQDLSGQ 176

Query: 165 ------------TDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKL 212
                       TD ++VPAL+A++E +KQELQ ARAAIE++KKG+AENYEHGQVMEKKL
Sbjct: 177 VQAMTQDLARMTTDAKRVPALRADVEAMKQELQCARAAIEYEKKGFAENYEHGQVMEKKL 236

Query: 213 ISMARELEKLRAEIANSEKRARAAAAVGNPGASFNTNYGTPEAGYPSNPYPVSYSMNPVQ 272
           ++MARE+EKLRAEIAN+EKRARAA A GNPG  +N NYG  +AGY  NPYP  Y MNPVQ
Sbjct: 237 VAMAREMEKLRAEIANAEKRARAAVAAGNPGQGYNANYGNADAGYAGNPYPSIYGMNPVQ 296

Query: 273 AGAETYPHYGPGPGSWGAYDMQRAQGHR 300
            G E +PHYGPGP +WGAYDMQRAQGHR
Sbjct: 297 PGVENFPHYGPGPAAWGAYDMQRAQGHR 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493976|ref|XP_002283692.2| PREDICTED: uncharacterized protein LOC100262249 [Vitis vinifera] gi|302142807|emb|CBI20102.3| unnamed protein product [Vitis vinifera]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/320 (63%), Positives = 238/320 (74%), Gaps = 30/320 (9%)

Query: 1   MSGRNRGPPLPMKGAPPVGLPLPVHEPQFGRGLGPMPPHPALLEEMR-----ETQFGMGP 55
           MS R+R PP PMK  P V      HEP FGRGLGP P HP LLE MR     E QFGMG 
Sbjct: 1   MSRRDRRPPFPMKDIPHV------HEPPFGRGLGPRP-HPKLLEGMRGAQLQELQFGMGH 53

Query: 56  RPLPPTHPAIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSF 115
           R LPP HP +IEEHLA Q Q+IQGLL DNQ LAATHVALKQELE  Q ELQRMVH++   
Sbjct: 54  R-LPPPHPWVIEEHLAVQQQEIQGLLVDNQGLAATHVALKQELEAVQQELQRMVHFSGML 112

Query: 116 RMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT---------- 165
           + DKDV+MR M+++  ++E DL G+E M++E+LKV AD+KELT  RQELT          
Sbjct: 113 QADKDVEMRTMHERLAKIEADLCGMEVMKAEVLKVNADVKELTLARQELTGKVQVMTQDL 172

Query: 166 -----DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELE 220
                DLQ   ALK EIE+VK ELQRARAAIE++KKGYAENY+HGQ+ME  LISMARELE
Sbjct: 173 ARAKADLQHASALKEEIESVKHELQRARAAIEYEKKGYAENYQHGQLMENNLISMARELE 232

Query: 221 KLRAEIANSEKRARAAAAVGNPGASFNTNYGTPEAGYPSNPYPVSYSMNPVQAGAETYPH 280
           KLRAE+AN++K A AAA+ GNPG  ++ NYG PEAGY +NPY  +Y MNPV AGAE++P 
Sbjct: 233 KLRAELANADKGASAAASGGNPG--YSGNYGNPEAGYAANPYLTNYGMNPVPAGAESFPQ 290

Query: 281 YGPGPGSWGAYDMQRAQGHR 300
           YGPGPGSWGAY+MQ+AQGHR
Sbjct: 291 YGPGPGSWGAYNMQQAQGHR 310

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525610|ref|XP_003531417.1| PREDICTED: uncharacterized protein LOC100805851 [Glycine max]

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 204/333 (61%), Positives = 248/333 (74%), Gaps = 37/333 (11%)

Query: 1   MSGRNRGPPLPMKGAPP--VGLPLPVHEPQFG-----------RGLGPMPPHPA-LLEEM 46
           MSGRNRG PLP    PP   G+  P+H+P +G             +GP+PPHP  LLE+ 
Sbjct: 1   MSGRNRGQPLP----PPHAAGISPPLHDPLYGPRAHHHHHHHHHLVGPVPPHPHHLLEDF 56

Query: 47  RETQFGMGPR--PLPPTHPA--IIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQ 102
           R++Q G+GP      P HPA  IIEE LAAQHQDIQGLL DNQRLAATHVALKQELE A+
Sbjct: 57  RDSQLGLGPTRGGSIPLHPAAAIIEERLAAQHQDIQGLLGDNQRLAATHVALKQELEAAR 116

Query: 103 YELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQ 162
           +ELQR+ H+ +S R D + +MRE+YDK+ QLE +LRG EA R+ELL+V++D+KELTAVRQ
Sbjct: 117 HELQRVAHFRESLRADTEARMRELYDKAAQLEAELRGAEAARTELLQVRSDVKELTAVRQ 176

Query: 163 ELT---------------DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQV 207
           +L+               D ++VPAL+A++E +KQELQ ARAAIE++KKG+AENYEHGQV
Sbjct: 177 DLSGQVQAMTQDLARMTADAKRVPALRADVEAMKQELQCARAAIEYEKKGFAENYEHGQV 236

Query: 208 MEKKLISMARELEKLRAEIANSEKRARAAAAVGNPGASFNTNYGTPEAGYPSNPYPVSYS 267
           MEKKL++MARE+EKLRAEIAN+EKRARAAAA GNPG  +N NYGT + GY  NPYP  Y 
Sbjct: 237 MEKKLVAMAREMEKLRAEIANAEKRARAAAAAGNPGQGYNANYGTADVGYAGNPYPGIYG 296

Query: 268 MNPVQAGAETYPHYGPGPGSWGAYDMQRAQGHR 300
           MNPVQ G E +P YGPGP +WGAYDMQR QGHR
Sbjct: 297 MNPVQPGVENFPQYGPGPAAWGAYDMQRVQGHR 329

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061391|ref|XP_002300456.1| predicted protein [Populus trichocarpa] gi|222847714|gb|EEE85261.1| predicted protein [Populus trichocarpa]

 Score =  353 bits (905), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 198/293 (67%), Positives = 233/293 (79%), Gaps = 21/293 (7%)

Query: 1   MSGRNRGPPLPMKGAPPVGLP-LPVHEPQFGRGLGPMPPHPALLEEMRETQFGMGPRPLP 59
           MSGRNRGPPLPMKG P   LP   +HE +FGRGLGP+PPHP LLE+MRE QFGM PR LP
Sbjct: 1   MSGRNRGPPLPMKGGPHPSLPPAAIHEARFGRGLGPLPPHPGLLEDMREPQFGMDPRRLP 60

Query: 60  PTHPAIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDK 119
           P H  + E+ LA QHQDIQ LLADNQRLAATHVALKQELE AQ+EL RM H+ D+F  +K
Sbjct: 61  PHH-VMFEDRLAVQHQDIQVLLADNQRLAATHVALKQELEAAQHELHRMAHFGDAFHAEK 119

Query: 120 DVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT-------------- 165
           DVQMRE+++KS+++++DLRGVEAMR+EL  V++DIKELT  +QELT              
Sbjct: 120 DVQMRELHEKSLRMKMDLRGVEAMRNELHHVRSDIKELTDAKQELTGRMQAMSQDLARYN 179

Query: 166 -DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRA 224
            DLQQVP++KAEIEN+KQELQRARAAIE++KKGYAENYEHG VMEKKL+ MARE+EKLRA
Sbjct: 180 VDLQQVPSVKAEIENMKQELQRARAAIEYEKKGYAENYEHGVVMEKKLVGMAREMEKLRA 239

Query: 225 EIANSEKRARAAAAVGNPGAS----FNTNYGTPEAGYPSNPYPVSYSMNPVQA 273
           EIAN+EKRARAAAA+GNP  S    +N NYG PE GY +NPY   Y MNPV++
Sbjct: 240 EIANAEKRARAAAAIGNPVFSAAAAYNANYGNPETGYTANPYQAVYGMNPVRS 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740591|emb|CBI30773.3| unnamed protein product [Vitis vinifera]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 196/318 (61%), Positives = 231/318 (72%), Gaps = 29/318 (9%)

Query: 1   MSGRNRGPPLPMKGAPPVGLPLPVHEPQF-GRGLGPMPPHPALLEE--MRETQFGMGPRP 57
           MSGRNRGPP+P+KG         +HEP F GRGLGPMP HPALL+E        G  P  
Sbjct: 77  MSGRNRGPPMPIKGG--------LHEPPFRGRGLGPMP-HPALLDEPQFGRGAGGPRPGT 127

Query: 58  LPPTHPAIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRM 117
           L P   AI E+ LA QHQDIQ LL DNQRLAATHVALKQE+E AQ+E++RM H A S + 
Sbjct: 128 LIPHPAAIFEDRLALQHQDIQALLIDNQRLAATHVALKQEVEAAQHEIKRMAHVAASAQT 187

Query: 118 DKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT------------ 165
           + D+Q+RE ++K ++LE DLR  +AMR+E+++V+ADI++LTA RQELT            
Sbjct: 188 EMDLQLREAFEKVMKLEADLRASDAMRAEVMQVRADIQQLTAARQELTSQAEGLSQDLNR 247

Query: 166 ---DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKL 222
              DLQQVP LK EIE ++QELQRARAAIE++KKGYAENYEHGQ MEK LI+MARE+EKL
Sbjct: 248 ANLDLQQVPLLKGEIEGMRQELQRARAAIEYEKKGYAENYEHGQAMEKNLIAMAREMEKL 307

Query: 223 RAEIANSEKRARAAAAVGNPGASFNTNYGTPEAGYPSNPYPVSYSMNPVQAGAETYPHYG 282
           RAE+AN+EKRARAAAAVGN    +  +YG PE GY  NPYP  Y MNP Q  AE  P YG
Sbjct: 308 RAELANAEKRARAAAAVGN--QIYGGSYGNPETGYGGNPYPAGYGMNPGQGSAEGVPQYG 365

Query: 283 PGPGSWGAYDMQRAQGHR 300
           PGPGSWG YDMQRA GHR
Sbjct: 366 PGPGSWGTYDMQRAHGHR 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462466|ref|XP_002267059.1| PREDICTED: uncharacterized protein LOC100267569 [Vitis vinifera] gi|147835469|emb|CAN63248.1| hypothetical protein VITISV_022231 [Vitis vinifera]

 Score =  339 bits (869), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 196/318 (61%), Positives = 231/318 (72%), Gaps = 29/318 (9%)

Query: 1   MSGRNRGPPLPMKGAPPVGLPLPVHEPQF-GRGLGPMPPHPALLEE--MRETQFGMGPRP 57
           MSGRNRGPP+P+KG         +HEP F GRGLGPMP HPALL+E        G  P  
Sbjct: 1   MSGRNRGPPMPIKGG--------LHEPPFRGRGLGPMP-HPALLDEPQFGRGAGGPRPGT 51

Query: 58  LPPTHPAIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRM 117
           L P   AI E+ LA QHQDIQ LL DNQRLAATHVALKQE+E AQ+E++RM H A S + 
Sbjct: 52  LIPHPAAIFEDRLALQHQDIQALLIDNQRLAATHVALKQEVEAAQHEIKRMAHVAASAQT 111

Query: 118 DKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT------------ 165
           + D+Q+RE ++K ++LE DLR  +AMR+E+++V+ADI++LTA RQELT            
Sbjct: 112 EMDLQLREAFEKVMKLEADLRASDAMRAEVMQVRADIQQLTAARQELTSQAEGLSQDLNR 171

Query: 166 ---DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKL 222
              DLQQVP LK EIE ++QELQRARAAIE++KKGYAENYEHGQ MEK LI+MARE+EKL
Sbjct: 172 ANLDLQQVPLLKGEIEGMRQELQRARAAIEYEKKGYAENYEHGQAMEKNLIAMAREMEKL 231

Query: 223 RAEIANSEKRARAAAAVGNPGASFNTNYGTPEAGYPSNPYPVSYSMNPVQAGAETYPHYG 282
           RAE+AN+EKRARAAAAVGN    +  +YG PE GY  NPYP  Y MNP Q  AE  P YG
Sbjct: 232 RAELANAEKRARAAAAVGN--QIYGGSYGNPETGYGGNPYPAGYGMNPGQGSAEGVPQYG 289

Query: 283 PGPGSWGAYDMQRAQGHR 300
           PGPGSWG YDMQRA GHR
Sbjct: 290 PGPGSWGTYDMQRAHGHR 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451035|ref|XP_003595794.1| hypothetical protein MTR_2g060900 [Medicago truncatula] gi|355484842|gb|AES66045.1| hypothetical protein MTR_2g060900 [Medicago truncatula]

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 185/324 (57%), Positives = 228/324 (70%), Gaps = 29/324 (8%)

Query: 1   MSGRNRGPPLPMKGAPPVGLPLPVHEPQFG-RGLGPMPPHPALLEEMRETQFGMGPRPLP 59
           MS RNRG P      P   +  P+H+P F  RG G  PPHP+LL++ RE+Q G+G R LP
Sbjct: 1   MSNRNRGHP---HQPPRAAISPPLHDPIFAMRGGGGHPPHPSLLDDFRESQLGLGHR-LP 56

Query: 60  PTHPA-IIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMD 118
             HPA +IEE LA QH +IQGLL DNQR AATHVALKQELE AQ+ELQRM HY DS R D
Sbjct: 57  LIHPAAVIEERLAVQHGEIQGLLGDNQRFAATHVALKQELEAAQHELQRMAHYKDSLRAD 116

Query: 119 KDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT------------- 165
            +V+MRE+Y+K+  LE +LRG E  ++EL +++ D+KEL+AVRQ+L+             
Sbjct: 117 TEVRMRELYEKAGALEAELRGTEVAKAELQQIRGDVKELSAVRQDLSGQVQAMSQDLSRM 176

Query: 166 --DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLR 223
             DL+++PAL  ++E +KQELQRARAAIE++KKG+ ENYEHGQVMEKKL++MARE+EKLR
Sbjct: 177 TADLKRMPALMVDVEAIKQELQRARAAIEYEKKGFTENYEHGQVMEKKLVAMAREMEKLR 236

Query: 224 AEIANSEKR---ARAAAAVGNPGASFNTNYGTPEAGYPSNPYPVSYSMNPVQAGAETYPH 280
           AEIAN+EKR     AA A GNPG  +N NYG  E GY  NPYP  Y MN  + G E +  
Sbjct: 237 AEIANAEKRAHATAAATAAGNPGQGYNPNYGNAETGYGGNPYPAYYGMNQ-RPGGENFQQ 295

Query: 281 Y----GPGPGSWGAYDMQRAQGHR 300
           Y     PGP +WGAYDMQR QGHR
Sbjct: 296 YAPAPVPGPAAWGAYDMQRVQGHR 319

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
TAIR|locus:2089616	331	AT3G14750 "AT3G14750" [Arabido	0.96	0.870	0.599	1.5e-90
TAIR|locus:2033681	359	AT1G67170 "AT1G67170" [Arabido	0.746	0.623	0.334	1.3e-29
TAIR|locus:2035751	283	AT1G55170 "AT1G55170" [Arabido	0.853	0.904	0.321	5.7e-27
TAIR|locus:2060848	288	AT2G30120 [Arabidopsis thalian	0.553	0.576	0.359	3.6e-25
TAIR|locus:2156146	238	AT5G61920 "AT5G61920" [Arabido	0.55	0.693	0.316	5.3e-17
UNIPROTKB|Q9Y592	693	CCDC41 "Coiled-coil domain-con	0.536	0.232	0.242	0.00029
RGD|1311992	838	Cgn "cingulin" [Rattus norvegi	0.476	0.170	0.259	0.00048
UNIPROTKB|F1SNT8	1286	DCTN1 "Uncharacterized protein	0.616	0.143	0.279	0.0008
ZFIN|ZDB-GENE-070112-2032	852	pbxip1b "pre-B-cell leukemia h	0.603	0.212	0.260	0.00082
UNIPROTKB|Q71YL3	1186	smC "Chromosome partition prot	0.55	0.139	0.218	0.00095

TAIR|locus:2089616 AT3G14750 "AT3G14750" [Arabidopsis thaliana (taxid:3702)]

 Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
 Identities = 187/312 (59%), Positives = 229/312 (73%)

Query:     1 MSGRNRGPPLP-MKGAPPVGLPLPVHEPQFGRGLG----PMPPHPALLEEMRETQFGMGP 55
             MSGRNRGPP P MKG    GL  PVH+P F RGLG    P PPHP+++++ RE QF +  
Sbjct:     1 MSGRNRGPPPPSMKGGSYSGLQAPVHQPPFVRGLGGGPVPPPPHPSMIDDSREPQFRVDA 60

Query:    56 RPLPPTHPAIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSF 115
             R LPP   +I+E+ LAAQ+QD+QGLLADNQRLAATHVALKQELEVAQ+ELQR++HY DS 
Sbjct:    61 RGLPPQF-SILEDRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMHYIDSL 119

Query:   116 RMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT---------- 165
             R ++++ MREMYDKS++ E++LR V+AMR+E+ K++ADIKE T+ RQELT          
Sbjct:   120 RAEEEIMMREMYDKSMRSEMELREVDAMRAEIQKIRADIKEFTSGRQELTSQVHLMTQDL 179

Query:   166 -----DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELE 220
                  DLQQ+P L AEIEN KQELQRARAAI+++KKGYAENYEHG++ME KL++MARELE
Sbjct:   180 ARLTADLQQIPTLTAEIENTKQELQRARAAIDYEKKGYAENYEHGKIMEHKLVAMARELE 239

Query:   221 KLRAEIANSEKXXXXXXXVGNPGA-SFNTNYGTPEAGYPSNPYPVSYSMNPVQAGAETYP 279
             KLRAEIANSE        VGNPG  ++   YG PEAGYP NPY  +Y+MNP Q G   Y 
Sbjct:   240 KLRAEIANSETSAYANGPVGNPGGVAYGGGYGNPEAGYPVNPYQPNYTMNPAQTGVVGY- 298

Query:   280 HYGPGPGSWGAY 291
              Y P  G   A+
Sbjct:   299 -YPPPYGPQAAW 309

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2033681 AT1G67170 "AT1G67170" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 85/254 (33%), Positives = 140/254 (55%)

Query:    25 HEPQFGRGLGPMPPHPALLEEMRETQFGMGPRPLPPTHPAIIEEHLAAQHQDIQGLLADN 84
             H   FG   G +PP  A   +     F M    LPP  P ++E+   AQH ++Q L  +N
Sbjct:    27 HPETFGNH-GAIPPSAA---QGVYPSFNM----LPP--PEVMEQKFVAQHGELQRLAIEN 76

Query:    85 QRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMR 144
             QRL  TH +L+QEL  AQ+E+Q +     S + +++ +M  + +K  ++E +L+  EA++
Sbjct:    77 QRLGGTHGSLRQELAAAQHEIQMLHAQIGSMKSEREQRMMGLAEKVAKMETELQKSEAVK 136

Query:   145 SELLKVQADIKELTAVRQEL---------------TDLQQVPALKAEIENVKQELQRARA 189
              E+ + +A+ + L   R+EL               +D+QQ+PAL +E+EN++QE Q+ RA
Sbjct:   137 LEMQQARAEARSLVVAREELMSKVHQLTQELQKSRSDVQQIPALMSELENLRQEYQQCRA 196

Query:   190 AIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKXXXXXXXVGNPGASFNTN 249
               +++KK Y ++ E  Q MEK  ++MARE+EKL+A++ N+          G P  + N N
Sbjct:   197 TYDYEKKFYNDHLESLQAMEKNYMTMAREVEKLQAQLMNNANSDRRA---GGPYGN-NIN 252

Query:   250 YGTPEAGYPS-NPY 262
                  +G+ S N Y
Sbjct:   253 AEIDASGHQSGNGY 266

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2035751 AT1G55170 "AT1G55170" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 98/305 (32%), Positives = 157/305 (51%)

Query:     1 MSGRNRGPPLPMKGAPPVGLPLPVHEPQFGRGLGPM--PPHPALLEEMRETQFGMGPRPL 58
             MSGRNR     ++ +      LP   P F RG  P+  PP P+LLE+++           
Sbjct:     1 MSGRNR-IHRDIRDSYHDHRDLPPERP-FLRG-PPLLQPPPPSLLEDLQ----------- 46

Query:    59 PPTHPAIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMD 118
                   I E  +  Q  +I+ LL+DN  LA   + L++EL  A+ EL RM       R +
Sbjct:    47 ------IQEGEIRRQDAEIRRLLSDNHGLADDRMVLERELVAAKEELHRMNLMISDLRAE 100

Query:   119 KDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT--------DL--- 167
             +D+Q+RE  +K  +LE D+R +E+ + E  +++ ++++L  +++EL+        DL   
Sbjct:   101 QDLQLREFSEKRHKLEGDVRAMESYKKEASQLRGEVQKLDEIKRELSGNVQLLRKDLAKL 160

Query:   168 ----QQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLR 223
                 +Q+P ++AE++++++EL  AR AIE++KK   E  E  Q MEK ++SMARE+EKLR
Sbjct:   161 QSDNKQIPGMRAEVKDLQKELMHARDAIEYEKKEKFELMEQRQTMEKNMVSMAREVEKLR 220

Query:   224 AEIANSEKXXXXXXXVGNPGASFNTNYGTPEAGYPSNPYPVSYSMNPVQAGA-ETYPHYG 282
             AE+A  +            G S+  NY   +  +       SY  N    G+ E   +Y 
Sbjct:   221 AELATVDSRPWGF------GGSYGMNYNNMDGTFRG-----SYGENDTYLGSSERSQYYS 269

Query:   283 PGPGS 287
              G GS
Sbjct:   270 HGSGS 274

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2060848 AT2G30120 [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 65/181 (35%), Positives = 113/181 (62%)

Query:    65 IIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMR 124
             I+E+ +A QH++IQ LL DNQRLA  H+ LK +L VA+ EL+R++  A   + + + ++R
Sbjct:    38 ILEDRIAIQHREIQSLLNDNQRLAVAHIGLKDQLNVAKRELERLLETAVKVKAEGEAKVR 97

Query:   125 EMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQEL-TDL-----QQVPA------ 172
             E+Y  ++++E + R ++ + +EL +V++D++ L + RQEL T+L     +   A      
Sbjct:    98 EVYQNALRMEAEARVIDGLGAELGQVRSDVQRLGSDRQELATELAMFDDEMAKAKPNSDR 157

Query:   173 ---LKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANS 229
                +K EIE ++ E+++ RAA+E +KK  A N  H + MEK +  + RE+ KL  E+ + 
Sbjct:   158 AIEVKLEIEILRGEIRKGRAALELEKKTRASNLHHERGMEKTIDHLNREIVKLEEELVDL 217

Query:   230 E 230
             E
Sbjct:   218 E 218

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2156146 AT5G61920 "AT5G61920" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 57/180 (31%), Positives = 98/180 (54%)

Query:    65 IIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMR 124
             I+E  +A Q  +I  L  DN++LA+++VALK++L VA  E+Q +  +      D ++Q+R
Sbjct:    52 ILENKIAVQAAEIDRLSNDNRKLASSYVALKEDLTVADREVQGLRAHIRKTETDHEIQIR 111

Query:   125 EMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT--------DLQQV----PA 172
                +K  ++E  ++  E +R E+     +   L   R+EL         DL++V     +
Sbjct:   112 STLEKIAKMEGMVKNRENIRREVQSAHIEAHRLAREREELASKVKLGMKDLKKVCLEAES 171

Query:   173 LKA---EIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANS 229
             L+A   E+E +K+E QR R   E +K G  E     + ME+K+I   + +EKLR+EI+ +
Sbjct:   172 LEASSQELERLKEEHQRLRKEFEEEKSGNVEKLAQLKGMERKIIGAVKAIEKLRSEISTA 231

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9Y592 CCDC41 "Coiled-coil domain-containing protein 41" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
 Identities = 41/169 (24%), Positives = 83/169 (49%)

Query:    65 IIEEHLAAQHQ--DIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQ 122
             +I+E L  +H   + Q L A++ RL   HV L+ EL+    E Q      +  ++  +  
Sbjct:    27 LIDERLRCEHHKANYQTLKAEHTRLQNEHVKLQNELKHLFNEKQTQ---QEKLQLLLEEL 83

Query:   123 MREMYDKSVQLE-VDLRGVEAMRSELLKVQADIKELTAVRQELTDL-QQVPALKAEIENV 180
               E+ +K+  LE + L+ +   + ELL+ Q   +  T +R+   +L ++V   +A    +
Sbjct:    84 RGELVEKTKDLEEMKLQILTPQKLELLRAQIQQELETPMRERFRNLDEEVEKYRAVYNKL 143

Query:   181 KQELQRARAAIEFDKKGYAENYEHGQVM-EKKLISMARELEKLRAEIAN 228
             + E    ++  E  K+ YA   + G++  E ++  +  + E+LR ++ N
Sbjct:   144 RYEHTFLKSEFEHQKEEYARILDEGKIKYESEIARLEEDKEELRNQLLN 192

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1311992 Cgn "cingulin" [Rattus norvegicus (taxid:10116)]

 Score = 119 (46.9 bits), Expect = 0.00048, P = 0.00048
 Identities = 40/154 (25%), Positives = 79/154 (51%)

Query:    71 AAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKS 130
             A Q  D   + A+ Q++++    L++ELE    E     H+ + F+ +K+ ++R    + 
Sbjct:   519 ATQAYDHAAVEAERQKMSSLVRELQKELEETSEETG---HWQNMFQKNKE-ELRAAKQEL 574

Query:   131 VQLEVDLRGVEAMRSELLKV-QADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARA 189
             +QL ++   +E    E +++ Q D+++    R    D QQV  LK E++  + EL+  +A
Sbjct:   575 LQLRMEKEEIEEELGEKMEILQRDLEQ---ARASTRDTQQVEELKKELQRTQGELKELQA 631

Query:   190 AIEFDKKGYAENYEHGQVMEKKLISMARELEKLR 223
               E   +  A  + + QV+EK+L  +  E ++ R
Sbjct:   632 --ERQSQEVAGRHRN-QVLEKQLSVLRAEADRSR 662

GO:0005923 "tight junction" evidence=ISO

GO:0043296 "apical junction complex" evidence=ISO

UNIPROTKB|F1SNT8 DCTN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 119 (46.9 bits), Expect = 0.00080, P = 0.00080
 Identities = 57/204 (27%), Positives = 102/204 (50%)

Query:    35 PMPPHPALLEEMRETQFGMGPRPLPPTHPAIIEEHLAAQHQDIQGLLADNQRLAATHVAL 94
             P+ P PAL      T  G  P PLP   P+  EE L AQ +D++  L   +   A   A 
Sbjct:   194 PIIPTPAL------TSPGAAP-PLPS--PSKEEEGLRAQVRDLEEKLETLRLKRAEDKAK 244

Query:    95 KQELEVAQYELQRMVHYADSFRMDK-DVQMR--EMYDKSVQ-LEVDLRGVEAMR--SELL 148
              +ELE  + +L+++  +    +  + D+Q R  E   ++ + LE   R +E M   ++ +
Sbjct:   245 LKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMADTADAI 304

Query:   149 KVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFD-KKGYAENYEHGQV 207
             ++    KE+   R E    Q+V ALK  ++ +  +L+  +A IE     G A +Y+  Q 
Sbjct:   305 EMATLDKEMAEERAESLQ-QEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQLKQ- 362

Query:   208 MEKKLISMARELEKLRAEIANSEK 231
             +E++   +   L ++R ++++SEK
Sbjct:   363 LEEQNARLKDALVRMR-DLSSSEK 385

GO:0031252 "cell leading edge" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

ZFIN|ZDB-GENE-070112-2032 pbxip1b "pre-B-cell leukemia homeobox interacting protein 1b" [Danio rerio (taxid:7955)]

 Score = 117 (46.2 bits), Expect = 0.00082, P = 0.00082
 Identities = 50/192 (26%), Positives = 88/192 (45%)

Query:    43 LEEMRETQFGMGPRPLPPTHPAIIEEHLA--AQHQDIQGLLADNQRLAATHVALKQELEV 100
             LE+ R+T  G+ P  +   H    ++ LA  AQ Q  QG L   Q LA T    ++  E 
Sbjct:   287 LEDSRDTPVGLQPPDILSKHTKDDQQILALQAQLQQYQGELKAAQLLAETGEKERERREE 346

Query:   101 AQYELQRMVHYADSF-RMDKDVQMRE--MYDKSVQLEVDLRGVEAMRSELLKVQADIKEL 157
              + E QR+    D    + K+++     M ++S + + +L+ + +++SEL  ++A + +L
Sbjct:   347 LEKEYQRIKEELDRLPALQKELEQENERMKEESARAQKELKALPSLQSELEHLRAQVSQL 406

Query:   158 T--AVRQELTDLQQVPAL--KAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLI 213
             T  A  Q      + P    K ++  +++   R R    +DKK   +         KK  
Sbjct:   407 TVKAEHQHPIATSRTPPAGDKRDVPPIERPDIRNRKT--WDKKTEEKEQSKADKEWKKKK 464

Query:   214 SMARELEKLRAE 225
             S  +E +K R E
Sbjct:   465 SGKKEGDKDRKE 476

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q71YL3 smC "Chromosome partition protein Smc" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 118 (46.6 bits), Expect = 0.00095, P = 0.00095
 Identities = 38/174 (21%), Positives = 83/174 (47%)

Query:    65 IIEEHLAAQHQDIQGL--LADNQRLAATHVALKQELEVAQYE-LQRMVHYADSFRMDKDV 121
             + ++ +A + ++++    + +N RL    +  K + E    E   + +   D  + D   
Sbjct:   702 LAKDSMAKKREELEETRGIGENLRLQEKELLGKLDRETENLERFNKQLQLYDIEKADGSE 761

Query:   122 QMREMYDKSVQL---EVDL-RGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEI 177
             ++ ++ ++   L   +V++ + +EA   E+  + +  K L + R    DL+ + +LKA+I
Sbjct:   762 ELNKLLERKETLLHEQVEIAKQIEATDEEIKAMTSSSKALESKRA--ADLESLSSLKAQI 819

Query:   178 ENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEK 231
                +++LQ A  A+E       ENYE  +  E+KL S+   L  +     ++ K
Sbjct:   820 AAKREQLQSATEAVERVTTTLHENYEQKEAAEQKLASLKTNLTSVHTSEESARK 873

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	300
COG3524	372	COG3524, KpsE, Capsule polysaccharide export prote	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-05
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	9e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-04
pfam03962	188	pfam03962, Mnd1, Mnd1 family	4e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	4e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	6e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	0.002
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.002
pfam05701	484	pfam05701, DUF827, Plant protein of unknown functi	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
TIGR03346	852	TIGR03346, chaperone_ClpB, ATP-dependent chaperone	0.003
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.004

>gnl|CDD|226055 COG3524, KpsE, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 11/114 (9%)

Query: 127 YDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQR 186
           +D   Q EV +  V  +  EL+ +QA +  + +V     +  Q+P LKA IE+++++L +
Sbjct: 212 FDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSVMNP--ENPQIPGLKARIESLRKQLLQ 269

Query: 187 ARAAIEFDKKG---------YAENYEHGQVMEKKLISMARELEKLRAEIANSEK 231
            + AI               +   Y      EK   +    LE  R E    + 
Sbjct: 270 EKQAISAGGSSQSLSNQAAEFQRLYLENTFAEKAYAAALTSLESARIEADRQQL 323

Length = 372

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 34/179 (18%), Positives = 77/179 (43%), Gaps = 13/179 (7%)

Query: 68  EHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMY 127
           + L  + ++++  L+  +          +E E    EL+  +        +   ++ E+ 
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELK 294

Query: 128 DKSVQLEVDLRGVEAMRSELLK----VQADIKELTAVRQEL--------TDLQQVPALKA 175
           ++  +LE ++  +     EL      ++  ++EL    + L        T L+++  L A
Sbjct: 295 EEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLA 354

Query: 176 EIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMAR-ELEKLRAEIANSEKRA 233
           E+E  K+EL+   +A+  + +   E         +  ++  R ELE+L+ EI + E+R 
Sbjct: 355 ELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERL 413

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 16/173 (9%)

Query: 66  IEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMRE 125
           +EE L +  + +  L  + + L     AL++ELE  + EL+                 R 
Sbjct: 763 LEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEE--------------AERR 808

Query: 126 MYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQ 185
           +     +LE   +  E +  E+ +++ +I+EL     EL +  ++  L+ E+E +K+EL+
Sbjct: 809 LDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEE--ELEELEKELEELKEELE 866

Query: 186 RARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRARAAAA 238
              A  E  +    E  E  + +E++L  +  EL +L+ EI    +R     A
Sbjct: 867 ELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEA 919

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 26/169 (15%), Positives = 64/169 (37%), Gaps = 10/169 (5%)

Query: 68  EHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMY 127
           E  A   + ++ L             L++++E    +++ +    +      +    E+ 
Sbjct: 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE 876

Query: 128 DKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRA 187
               +       +  +RSEL ++  +++EL + R EL    +   L+ ++  ++  L+  
Sbjct: 877 ALLNERASLEEALALLRSELEELSEELRELESKRSELRRELE--ELREKLAQLELRLEGL 934

Query: 188 RAAIEFDKKGYAENY-----EHGQVMEKKLISMA---RELEKLRAEIAN 228
              I+  ++  +E Y     E   +  K         R L++L  +I  
Sbjct: 935 EVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 32/170 (18%)

Query: 83  DNQR--LAA---THVALKQELEVAQYELQRMVHYADSFRMDKDVQM-------------- 123
           D++R  LAA    ++A K +LE  + +L  +  + D  R+   V                
Sbjct: 341 DHERDALAAAYKAYLAYKPKLEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEE 400

Query: 124 REMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQE 183
               +K    E + R +      + K++  ++ L     EL     +  LK EIE ++ E
Sbjct: 401 ERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRE--LEELKREIEKLESE 458

Query: 184 LQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRA 233
           L+R R  +    +            ++++ +  R +E+L  E+   +KR 
Sbjct: 459 LERFRREVRDKVR-----------KDREIRARDRRIERLEKELEEKKKRV 497

Length = 652

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 34/177 (19%), Positives = 73/177 (41%), Gaps = 22/177 (12%)

Query: 81  LADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGV 140
           L + +   A   A  ++LE     L+  +   +    +   Q+ E+  +  +L+ +L  +
Sbjct: 669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAAL 728

Query: 141 EAMRSELLKVQADIKELTAVRQELTDL-------------------QQVPALKAEIENVK 181
           E    EL ++Q+ ++EL    +EL +                    + +  LK EIE ++
Sbjct: 729 E---EELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELE 785

Query: 182 QELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRARAAAA 238
           ++ Q  +  +E  ++   E       +E++L S+ +  E+L  EI   E+       
Sbjct: 786 EKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEE 842

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 33/183 (18%), Positives = 78/183 (42%), Gaps = 29/183 (15%)

Query: 65  IIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMR 124
            +E+ +     +++ L A  + L      L++ L     +L+     + S   +   ++ 
Sbjct: 748 SLEQEIENVKSELKELEARIEELEEDLHKLEEALN----DLEA--RLSHSRIPEIQAELS 801

Query: 125 EMYDKSVQLEVDLRGVEAM--RSELLKVQAD--IKELTAVRQELTD-----LQQVPALKA 175
           ++ ++  ++E  LR +E    R  L K   +  I+EL   R +L +      +++  L  
Sbjct: 802 KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNG 861

Query: 176 EIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRARA 235
           + E +++EL+   AA+                +E +L  + +E ++L A++   E++   
Sbjct: 862 KKEELEEELEELEAALR--------------DLESRLGDLKKERDELEAQLRELERKIEE 907

Query: 236 AAA 238
             A
Sbjct: 908 LEA 910

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 30/177 (16%), Positives = 69/177 (38%), Gaps = 10/177 (5%)

Query: 67  EEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQ---YELQRMVHYADSFRMDKDVQM 123
           EE      + +Q L    + L      L++E+E  Q   Y L   +   +  +     ++
Sbjct: 253 EELEELTAE-LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311

Query: 124 REMYDKSVQLEVDLRGVEAMRSELLK----VQADIKELTAVRQELTDLQQVPALKAEIEN 179
             +  +  +LE  L  +E+   EL +    ++  ++EL    + L    ++  L+AE+E 
Sbjct: 312 ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL--EAELEELEAELEE 369

Query: 180 VKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRARAA 236
           ++  L+     +E  +   A+       +  ++  +   LE+L       ++     
Sbjct: 370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL 426

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 18/172 (10%)

Query: 85  QRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMR 144
           +++A    AL  EL     EL+  +        +   Q+  +     +LE ++  +E   
Sbjct: 691 EKIAELEKAL-AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749

Query: 145 S----ELLKVQADIKELTAVRQELTDL------------QQVPALKAEIENVKQELQRAR 188
           +    EL +++A+I+EL    +E  +              Q+  LK E++ +++ L   R
Sbjct: 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELR 809

Query: 189 AAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIA-NSEKRARAAAAV 239
           A +    +  A   E  + +E+++ +  R LE L  +I   SE     AA +
Sbjct: 810 AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 34/154 (22%), Positives = 70/154 (45%), Gaps = 11/154 (7%)

Query: 85  QRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRG-VEAM 143
            R       ++ E+E      +R+    + F   +    R +      LE + +G  EA 
Sbjct: 492 LRAQVELSQIRSEIE------RRLAEKEEEFENTRKNHQRAIESLQATLEAEAKGKAEAS 545

Query: 144 RSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYE 203
           R +  K++ DI EL  +  +  +     A K  ++  +Q+++  +  +E +++   +  E
Sbjct: 546 RLKK-KLEGDINELE-IALDHANKANAEAQK-NVKKYQQQVKELQTQVEEEQRAREDARE 602

Query: 204 HGQVMEKKLISMARELEKLRAEIANSEKRARAAA 237
              V E++  ++  ELE+LR+ +  +E RAR  A
Sbjct: 603 QLAVAERRATALEAELEELRSALEQAE-RARKQA 635

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 32/174 (18%), Positives = 78/174 (44%), Gaps = 16/174 (9%)

Query: 66  IEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMRE 125
           + E  A   ++++ L A+ + +       + EL+  + +L+++    +  + + D     
Sbjct: 355 LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELD----R 410

Query: 126 MYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQ 185
           + ++  +L  +L     + + +  ++A I EL   +++            EI+  + +L+
Sbjct: 411 LQEELQRLSEEL---ADLNAAIAGIEAKINELEEEKEDK---------ALEIKKQEWKLE 458

Query: 186 RARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRARAAAAV 239
           +  A +   ++   +  E    +EK+L  + REL +  A+   SE+R R   AV
Sbjct: 459 QLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAV 512

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 4/74 (5%)

Query: 158 TAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMAR 217
            A+ +  T L++   LK E+E +KQ +   +A IE  KKG  E  E  +++E+      +
Sbjct: 62  QALNKLKTRLEK---LKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLE-K 117

Query: 218 ELEKLRAEIANSEK 231
           EL+KL+AE+   EK
Sbjct: 118 ELKKLKAELEKYEK 131

This family of proteins includes MND1 from S. cerevisiae. The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair. Length = 188

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 144 RSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYE 203
           R  L ++Q ++ EL     EL   +Q+  L+ E + +KQEL    A    + +   +   
Sbjct: 65  RERLPELQQELAELQEELAELQ--EQLAELQQENQELKQELSTLEA----ELERLQKELA 118

Query: 204 HGQVMEKKLISMARELEKLRAEIANSEKRARAAAA 238
             + +    I +  E  +LR E+A  ++   A  A
Sbjct: 119 RIKQLSANAIELDEENRELREELAELKQENEALEA 153

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 14/109 (12%)

Query: 130 SVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARA 189
             +L    + +  ++ EL ++Q  + EL    QEL   Q++  L+AE+E +++EL R + 
Sbjct: 65  RERLPELQQELAELQEELAELQEQLAELQQENQEL--KQELSTLEAELERLQKELARIKQ 122

Query: 190 ----AIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRAR 234
               AIE D+    EN    + + ++L  + +E E L AE    ++  +
Sbjct: 123 LSANAIELDE----EN----RELREELAELKQENEALEAENERLQENEQ 163

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 33/169 (19%), Positives = 72/169 (42%), Gaps = 17/169 (10%)

Query: 85  QRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMR 144
           QRL      LK+EL   Q EL+R+ +  D    +     R++ +   ++E   +  E ++
Sbjct: 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLK 736

Query: 145 SELLKVQADIK----ELTAVRQELTDL--------QQVPALKAEIENVKQEL-----QRA 187
             L +++ D+     E+  V+ EL +L        + +  L+  + +++  L        
Sbjct: 737 ERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEI 796

Query: 188 RAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRARAA 236
           +A +   ++  +      + +E+KL  +  E E L  EI   +++    
Sbjct: 797 QAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 33/175 (18%), Positives = 68/175 (38%), Gaps = 12/175 (6%)

Query: 66  IEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMRE 125
            E  +      I+ L  + + L      L+ EL +   E   +    +S         R 
Sbjct: 780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR 839

Query: 126 MYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDL-----QQVPALKAEIENV 180
           + D   Q+E     +E++ +E+ +++  I+EL +  + L +      + +  L++E+E +
Sbjct: 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL 899

Query: 181 KQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRARA 235
            +EL+         K+             +KL  +   LE L   I N ++R   
Sbjct: 900 SEELRELE-----SKRSELRRELEEL--REKLAQLELRLEGLEVRIDNLQERLSE 947

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 26/155 (16%), Positives = 65/155 (41%), Gaps = 3/155 (1%)

Query: 75  QDIQGLLADNQRLAATHVALKQELEVAQYELQRMVH---YADSFRMDKDVQMREMYDKSV 131
           + +  L  + + L      LK+ELE  + E + +       +  + + + ++RE+  +  
Sbjct: 842 EKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELA 901

Query: 132 QLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAI 191
           +L+ ++  +     EL      ++      +E  + +    L+ E+E   + L+    A+
Sbjct: 902 ELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEAL 961

Query: 192 EFDKKGYAENYEHGQVMEKKLISMARELEKLRAEI 226
                   E YE  +   ++L S   +LE+ + ++
Sbjct: 962 GPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKL 996

Length = 1163

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 25/162 (15%)

Query: 82  ADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVE 141
           AD   L +  + L  E EVA+   +     A  F  D          + ++ +  L   E
Sbjct: 81  ADAAELESQVLRL--EAEVARLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSL--FE 136

Query: 142 AMRSEL-LKVQADIKELTAVRQELTDLQ-QVPALKAEIENVKQELQRARAAIEFDKKGYA 199
           + +S L  +++  + ++  +  EL  LQ Q+ AL+ ++E + +EL+  R           
Sbjct: 137 SRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARR----------- 185

Query: 200 ENYEHGQVMEKKLISMAR--ELEKLRAEIANSEKRARAAAAV 239
                 ++ EK L+S     ELE+ RAE      R  A   V
Sbjct: 186 ------KLKEKGLVSRLELLELERERAEAQGELGRLEAELEV 221

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 35/194 (18%), Positives = 67/194 (34%), Gaps = 25/194 (12%)

Query: 64  AIIEEHLAAQHQDIQGLLA---------DNQRLAATHVALKQELEVAQYELQRMVHYADS 114
              EE L +     +             + Q+ A      +  L+ A+ +LQR+ +   S
Sbjct: 610 QQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEA--RTALKQARLDLQRLQNEQQS 667

Query: 115 FRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTA--VRQELTDLQQ--- 169
            +   ++ + E      Q E  LR ++A   +LL+ Q    E      R+  T+      
Sbjct: 668 LKDKLELAIAERKQ---QAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLAKWQ 724

Query: 170 --VPALKAEIENVKQELQRARAA----IEFDKKGYAENYEHGQVMEKKLISMARELEKLR 223
                L  ++  +   ++ AR      ++  KK Y        V    +  + R++E+L 
Sbjct: 725 VVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASLDVDPNTVKELKRQIEELE 784

Query: 224 AEIANSEKRARAAA 237
             I     R     
Sbjct: 785 TTIERIAVRRPEVR 798

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827)

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 37/189 (19%), Positives = 78/189 (41%), Gaps = 18/189 (9%)

Query: 66  IEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMRE 125
           +E   AA  +  +  +             ++EL+ A+ EL+R+    D  +  + +    
Sbjct: 179 LERAHAAHLEAEEERIGAALEKDQDRETYEKELKEAEKELERLKQDLDPEKDLEKLAEAS 238

Query: 126 MYDKSVQLEVD-LRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQEL 184
              +S+Q E+  +  V ++  EL + +A++++     + L +L  V +LK E+E  K+EL
Sbjct: 239 AELESLQKEISIMASVASVLKELEEAKANLEKAAEEEKSLRNL--VESLKQELEEEKKEL 296

Query: 185 QRARA------------AIEFDK---KGYAENYEHGQVMEKKLISMARELEKLRAEIANS 229
           +  R               E ++   +  ++  E    +  KL   + E E+ R E   +
Sbjct: 297 EELREKEGEAEEAASSLEAELNRTKSEKESKAREKMVEIPLKLQQASSEAEEARKEAEAA 356

Query: 230 EKRARAAAA 238
            +  R    
Sbjct: 357 REELRKLKE 365

This family consists of several plant proteins of unknown function. Several sequences in this family are described as being "myosin heavy chain-like". Length = 484

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 23/131 (17%), Positives = 57/131 (43%), Gaps = 2/131 (1%)

Query: 62  HPAIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDV 121
               +   L    +  + L  +   L A    ++ ELE  + E++ +    +      + 
Sbjct: 363 LEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLED 422

Query: 122 QMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVK 181
              E+ +   +LE     +E +  EL +++  ++EL    +EL   +++  L+ E++ ++
Sbjct: 423 LKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELE--RELAELQEELQRLE 480

Query: 182 QELQRARAAIE 192
           +EL    A ++
Sbjct: 481 KELSSLEARLD 491

Length = 1163

>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 21/128 (16%)

Query: 112 ADSFRMDKDVQMREMYD---KSVQLEVDLRGV-----EAMRSELLKVQADIKELTAVRQE 163
           A   RM+ D +  E+ +   + +QLE++   +     EA +  L  ++ ++ EL     +
Sbjct: 393 AARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYAD 452

Query: 164 LT--------DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQV--MEKKLI 213
           L          +Q +  +K EIE V+ EL++A    +  K   A   ++G++  +EK+L 
Sbjct: 453 LEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAK---AAELQYGKLPELEKRLQ 509

Query: 214 SMARELEK 221
           +   +L +
Sbjct: 510 AAEAKLGE 517

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins [Protein fate, Protein folding and stabilization]. Length = 852

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 29/149 (19%), Positives = 69/149 (46%), Gaps = 11/149 (7%)

Query: 94  LKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQAD 153
           L++ELE  + E++ +    +    + + ++  +     +LE  +R +E    EL K   +
Sbjct: 219 LREELEKLEKEVKELEELKEEIE-ELEKELESLEGSKRKLEEKIRELEERIEELKK---E 274

Query: 154 IKELTAVRQELTDLQQVP-------ALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQ 206
           I+EL    +EL +L++             E  +  +E+++  + +E +  G  E  +  +
Sbjct: 275 IEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELE 334

Query: 207 VMEKKLISMARELEKLRAEIANSEKRARA 235
             E++L  + ++L++L   +   E+R   
Sbjct: 335 EKEERLEELKKKLKELEKRLEELEERHEL 363

Length = 880

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	300
PRK11637	428	AmiB activator; Provisional	97.54
PRK09039	343	hypothetical protein; Validated	97.42
PRK11637	428	AmiB activator; Provisional	97.32
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	96.93
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.85
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.73
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	96.66
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.64
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	96.43
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	96.41
KOG4807	593	consensus F-actin binding protein, regulates actin	96.39
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.31
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.29
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.22
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	96.11
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.95
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	95.74
COG4372	499	Uncharacterized protein conserved in bacteria with	95.71
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.63
KOG0933	1174	consensus Structural maintenance of chromosome pro	95.6
PRK04863	1486	mukB cell division protein MukB; Provisional	95.58
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	95.37
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	95.36
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	95.34
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	95.29
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	95.14
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	95.05
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	95.0
PRK02224	880	chromosome segregation protein; Provisional	94.89
COG3524	372	KpsE Capsule polysaccharide export protein [Cell e	94.85
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	94.85
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	94.81
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	94.77
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	94.7
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	94.62
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	94.59
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	94.59
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	94.58
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.58
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	94.55
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	94.32
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	94.29
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	94.27
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	94.23
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	94.23
PHA02562	562	46 endonuclease subunit; Provisional	94.15
PRK02224	880	chromosome segregation protein; Provisional	94.11
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	94.08
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.0
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	93.94
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	93.91
PRK03918	880	chromosome segregation protein; Provisional	93.86
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	93.82
PRK04778	569	septation ring formation regulator EzrA; Provision	93.74
PRK04863	1486	mukB cell division protein MukB; Provisional	93.7
PF13514	1111	AAA_27: AAA domain	93.7
KOG4807	593	consensus F-actin binding protein, regulates actin	93.67
PF10186	302	Atg14: UV radiation resistance protein and autopha	93.62
COG4372	499	Uncharacterized protein conserved in bacteria with	93.61
PRK09039	343	hypothetical protein; Validated	93.6
PRK04778	569	septation ring formation regulator EzrA; Provision	93.53
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	93.52
PF00038	312	Filament: Intermediate filament protein; InterPro:	93.51
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	93.45
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	93.36
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	93.28
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	93.24
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	93.21
KOG0971	1243	consensus Microtubule-associated protein dynactin	93.08
COG1322	448	Predicted nuclease of restriction endonuclease-lik	93.01
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	92.89
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	92.8
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	92.69
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	92.39
PHA02562	562	46 endonuclease subunit; Provisional	92.28
KOG0249	916	consensus LAR-interacting protein and related prot	92.07
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	91.96
PRK15178	434	Vi polysaccharide export inner membrane protein Ve	91.88
KOG0996	1293	consensus Structural maintenance of chromosome pro	91.87
PF14735	238	HAUS4: HAUS augmin-like complex subunit 4	91.6
KOG3478	120	consensus Prefoldin subunit 6, KE2 family [Posttra	91.43
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	91.42
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	91.36
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	91.35
PF14662	193	CCDC155: Coiled-coil region of CCDC155	91.33
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	91.28
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	91.25
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	91.2
PRK11546	143	zraP zinc resistance protein; Provisional	90.94
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	90.89
PRK10361	475	DNA recombination protein RmuC; Provisional	90.83
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	90.57
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	90.54
PRK10884	206	SH3 domain-containing protein; Provisional	90.53
PF13514	1111	AAA_27: AAA domain	90.26
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	90.11
PF09486	158	HrpB7: Bacterial type III secretion protein (HrpB7	90.03
COG4942	420	Membrane-bound metallopeptidase [Cell division and	89.88
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	89.82
KOG0979	1072	consensus Structural maintenance of chromosome pro	89.45
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	89.45
PRK11546	143	zraP zinc resistance protein; Provisional	89.4
PF04626	132	DEC-1_C: Dec-1 protein, C terminal region; InterPr	89.36
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	89.28
PF12592	57	DUF3763: Protein of unknown function (DUF3763); In	89.19
PF12004	495	DUF3498: Domain of unknown function (DUF3498); Int	88.89
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	88.89
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	88.78
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	88.77
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	88.73
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	88.64
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	88.44
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	88.4
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	88.33
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	88.3
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	88.23
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	88.17
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	88.11
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	88.1
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	88.01
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	88.01
KOG1937	521	consensus Uncharacterized conserved protein [Funct	87.8
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	87.76
PF14662	193	CCDC155: Coiled-coil region of CCDC155	87.73
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	87.52
KOG0964	1200	consensus Structural maintenance of chromosome pro	87.49
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	86.91
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	86.76
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	86.68
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	86.48
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	86.34
COG2433	652	Uncharacterized conserved protein [Function unknow	86.02
KOG0996	1293	consensus Structural maintenance of chromosome pro	85.99
PRK11519	719	tyrosine kinase; Provisional	85.83
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	85.5
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	85.41
PRK09343	121	prefoldin subunit beta; Provisional	85.16
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	85.03
PF05008	79	V-SNARE: Vesicle transport v-SNARE protein N-termi	84.98
KOG0288	459	consensus WD40 repeat protein TipD [General functi	84.63
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	84.21
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	83.88
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	83.72
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	83.65
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	83.63
PRK10884	206	SH3 domain-containing protein; Provisional	83.59
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	83.53
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	83.42
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	83.37
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	83.36
KOG0249	916	consensus LAR-interacting protein and related prot	83.06
KOG0288	459	consensus WD40 repeat protein TipD [General functi	82.93
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	82.9
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	82.86
KOG0933	1174	consensus Structural maintenance of chromosome pro	82.52
KOG3433	203	consensus Protein involved in meiotic recombinatio	82.16
PRK10246	1047	exonuclease subunit SbcC; Provisional	81.91
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	81.69
KOG2264	907	consensus Exostosin EXT1L [Signal transduction mec	81.53
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	81.22
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	81.04
KOG0963	629	consensus Transcription factor/CCAAT displacement	80.87
KOG0963	629	consensus Transcription factor/CCAAT displacement	80.79
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	80.68
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	80.55
COG2433	652	Uncharacterized conserved protein [Function unknow	80.21
KOG4603	201	consensus TBP-1 interacting protein [Signal transd	80.16

>PRK11637 AmiB activator; Provisional

Probab=97.54  E-value=0.058  Score=53.58  Aligned_cols=16  Identities=19%  Similarity=0.412  Sum_probs=8.6

Q ss_pred             HHHHHHHhHHHHHhhh
Q 038916           66 IEEHLAAQHQDIQGLL   81 (300)
Q Consensus        66 lEe~la~Q~~Ei~~L~   81 (300)
                      ++.+|.....+|..+-
T Consensus        52 l~~qi~~~~~~i~~~~   67 (428)
T PRK11637         52 IQQDIAAKEKSVRQQQ   67 (428)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5556655555555333

>PRK09039 hypothetical protein; Validated

Probab=97.42  E-value=0.008  Score=58.70  Aligned_cols=73  Identities=25%  Similarity=0.323  Sum_probs=59.4

Q ss_pred             HHHHHHHHHhH-hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHH----HHHHHHHHHHHH
Q 038916          155 KELTAVRQELT-DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISM----ARELEKLRAEIA  227 (300)
Q Consensus       155 q~L~a~RqEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisM----arEvekLRael~  227 (300)
                      ++|...+++.+ ...+|..|+++|++||..|...-++++.-++...+.-+|+..+++.|...    .+|++++|.+|-
T Consensus       123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~  200 (343)
T PRK09039        123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFF  200 (343)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            35555566665 35679999999999999999999999988888888889999999998877    567888888873

>PRK11637 AmiB activator; Provisional

Probab=97.32  E-value=0.14  Score=50.95  Aligned_cols=49  Identities=12%  Similarity=0.112  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 038916           64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYA  112 (300)
Q Consensus        64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i  112 (300)
                      +-++++|.....+|..+-.+-.-+-.....+.++|.....+|..+..-+
T Consensus        43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i   91 (428)
T PRK11637         43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKL   91 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5688888888888887777766554444445555555444444444333

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=96.93  E-value=0.16  Score=52.83  Aligned_cols=46  Identities=22%  Similarity=0.383  Sum_probs=33.3

Q ss_pred             HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHH
Q 038916           64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMV  109 (300)
Q Consensus        64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~  109 (300)
                      .+|+.+++.-..|-..|+..|..|-..-..|+.++...+.+|....
T Consensus       139 ~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~  184 (546)
T PF07888_consen  139 QLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEE  184 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677777776677788888888887777777777776666665554

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.85  E-value=0.29  Score=49.53  Aligned_cols=54  Identities=13%  Similarity=0.148  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916          171 PALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIA  227 (300)
Q Consensus       171 ~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~  227 (300)
                      .+-++.|+-+++|-+...+.++.++..-..   ....+..|=.++.++|.+++++++
T Consensus       195 ~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~---~l~eL~~~~~~L~~~Ias~e~~aA  248 (420)
T COG4942         195 RAQQAKLAQLLEERKKTLAQLNSELSADQK---KLEELRANESRLKNEIASAEAAAA  248 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHH
Confidence            334455566666666666666666644333   344455555666777777776665

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.73  E-value=0.35  Score=45.51  Aligned_cols=88  Identities=23%  Similarity=0.361  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH--HHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 038916           90 THVALKQELEVAQYELQRMVHYADSFRMDKDVQ--MREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDL  167 (300)
Q Consensus        90 ~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq--~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~  167 (300)
                      ....++.+|....+.|..+.  ..+.+++-|+.  ..++-+--.|+|.+......+..++..++.++......|.+|.  
T Consensus        48 ~~~~ye~el~~lr~~id~~~--~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le--  123 (312)
T PF00038_consen   48 IKEMYEEELRELRRQIDDLS--KEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLE--  123 (312)
T ss_dssp             HHHHHHHHHHCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             cccchhhHHHHhHHhhhhHH--HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHH--
Confidence            44455666666666666555  33333333333  4444555567777777777888888888888888888888882  


Q ss_pred             cccHHHHHHHHHHH
Q 038916          168 QQVPALKAEIENVK  181 (300)
Q Consensus       168 qQv~al~aEl~~lR  181 (300)
                      .+|..|..||+-++
T Consensus       124 ~~i~~L~eEl~fl~  137 (312)
T PF00038_consen  124 NQIQSLKEELEFLK  137 (312)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            23444444444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=96.66  E-value=0.33  Score=52.31  Aligned_cols=12  Identities=8%  Similarity=0.412  Sum_probs=4.6

Q ss_pred             HHHHHHHhHHHH
Q 038916           66 IEEHLAAQHQDI   77 (300)
Q Consensus        66 lEe~la~Q~~Ei   77 (300)
                      ++..+.....++
T Consensus       703 ~~~~l~~l~~~~  714 (1179)
T TIGR02168       703 LRKELEELEEEL  714 (1179)
T ss_pred             HHHHHHHHHHHH
Confidence            344443333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.64  E-value=0.32  Score=52.76  Aligned_cols=44  Identities=11%  Similarity=0.200  Sum_probs=21.1

Q ss_pred             HHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHH
Q 038916           66 IEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMV  109 (300)
Q Consensus        66 lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~  109 (300)
                      ++.++.....+|..+-.....+-.....+++++.....++..+.
T Consensus       292 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~  335 (1164)
T TIGR02169       292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLL  335 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555554444444444444444444444444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=96.43  E-value=0.048  Score=46.16  Aligned_cols=88  Identities=22%  Similarity=0.328  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 038916          145 SELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRA  224 (300)
Q Consensus       145 ~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRa  224 (300)
                      .++..+.++++.+...-.+.  ..++..++.+|.....-...+-.-|+.|...++++++.+..+++.+..+..++..|++
T Consensus         3 ~e~~~l~~e~~~~~~~~~~~--~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~   80 (132)
T PF07926_consen    3 SELSSLQSELQRLKEQEEDA--EEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKA   80 (132)
T ss_pred             hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666665555555444  2467788888999999899999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHH
Q 038916          225 EIANSEKRAR  234 (300)
Q Consensus       225 el~n~ekR~r  234 (300)
                      ++..++....
T Consensus        81 ~~~~a~~~l~   90 (132)
T PF07926_consen   81 EAESAKAELE   90 (132)
T ss_pred             HHHHHHHHHH
Confidence            9988877543

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=96.41  E-value=0.6  Score=50.35  Aligned_cols=15  Identities=13%  Similarity=0.257  Sum_probs=6.0

Q ss_pred             HHHHHHHhHHHHHhh
Q 038916           66 IEEHLAAQHQDIQGL   80 (300)
Q Consensus        66 lEe~la~Q~~Ei~~L   80 (300)
                      ++.+++....++..+
T Consensus       675 l~~e~~~l~~~~~~l  689 (1179)
T TIGR02168       675 RRREIEELEEKIEEL  689 (1179)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=96.39  E-value=0.37  Score=48.72  Aligned_cols=166  Identities=20%  Similarity=0.273  Sum_probs=88.2

Q ss_pred             HHHHHHHHhHHHHHhhhhhccch-----hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhh
Q 038916           65 IIEEHLAAQHQDIQGLLADNQRL-----AATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRG  139 (300)
Q Consensus        65 ~lEe~la~Q~~Ei~~L~~dNqRL-----a~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra  139 (300)
                      .+|+.---..+|+++|--+--||     |+|..+++.=..+-+.||.+=+.--.++..+-|.=.+-..+...-+..||..
T Consensus       353 kiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeV  432 (593)
T KOG4807|consen  353 KIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEV  432 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHH
Confidence            34443334446788887777776     4667777776677777776655333344433333344444444444444443


Q ss_pred             hHH-HHHHHHHHHHHHHHHHHHHHHhH----hhcccHHHHHHHH-HHHHHHHHHHHHhhhhhhchhhhhh----------
Q 038916          140 VEA-MRSELLKVQADIKELTAVRQELT----DLQQVPALKAEIE-NVKQELQRARAAIEFDKKGYAENYE----------  203 (300)
Q Consensus       140 ~e~-lr~El~ql~aE~q~L~a~RqEL~----d~qQv~al~aEl~-~lRqEl~r~R~a~e~Ekk~~~e~~e----------  203 (300)
                      +-. ..++..-.-.=+|.|++-|+-|-    ++|-+.+-.+||. .|-.||.+.|.-++-+--++-.-+-          
T Consensus       433 LSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkdayELEV  512 (593)
T KOG4807|consen  433 LSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEV  512 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchhhHHH
Confidence            211 22222222222333333333332    3333444444443 3455666666655544333222222          


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 038916          204 HGQVMEKKLISMARELEKLRAEIANSE  230 (300)
Q Consensus       204 Q~qaMeknlisMarEvekLRael~n~e  230 (300)
                      =+.+-|.+|.-+++||..|+-||..+-
T Consensus       513 LLRVKEsEiQYLKqEissLkDELQtal  539 (593)
T KOG4807|consen  513 LLRVKESEIQYLKQEISSLKDELQTAL  539 (593)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            245678899999999999999998763

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.31  E-value=0.32  Score=47.35  Aligned_cols=163  Identities=21%  Similarity=0.295  Sum_probs=98.0

Q ss_pred             HHHHHHHH--HhHHHH-HhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh----------------------
Q 038916           64 AIIEEHLA--AQHQDI-QGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMD----------------------  118 (300)
Q Consensus        64 ~~lEe~la--~Q~~Ei-~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e----------------------  118 (300)
                      .+||++--  .-.+.| |.|+..|+-|......|.++|..+...|..|.+ -=++|.|                      
T Consensus        69 ~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrH-eL~~kdeLL~~ys~~~ee~~~~~~~~~~~  147 (306)
T PF04849_consen   69 RLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRH-ELSMKDELLQIYSNDDEESEPESSESTPL  147 (306)
T ss_pred             HHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcHhhhcccccCCCccc
Confidence            57777631  112346 899999999998889999999999999988873 2233332                      


Q ss_pred             ----------hHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH--hhcccHHHHHHHHHHHHHHHH
Q 038916          119 ----------KDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT--DLQQVPALKAEIENVKQELQR  186 (300)
Q Consensus       119 ----------~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~--d~qQv~al~aEl~~lRqEl~r  186 (300)
                                +=++...|-.|+.-+|.|..   .||.|..++..|.-.++.--|.|.  -++|+....++|..|.+||.+
T Consensus       148 ~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~---~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~  224 (306)
T PF04849_consen  148 RRNESSLSSQKCIQLEALQEKLKSLEEENE---QLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELAR  224 (306)
T ss_pred             cccccccccccchhHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Confidence                      01334445555555554433   444455555444444444444444  345555556666666666665


Q ss_pred             HHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 038916          187 ARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSE  230 (300)
Q Consensus       187 ~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~e  230 (300)
                      ..-.+..-..--...+-|+-.+++.+-...-|-|+|+.-|..++
T Consensus       225 k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk  268 (306)
T PF04849_consen  225 KTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK  268 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            54444443334455666677777777777777777777766553

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.29  E-value=0.35  Score=45.61  Aligned_cols=119  Identities=20%  Similarity=0.341  Sum_probs=64.2

Q ss_pred             HHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHH
Q 038916           65 IIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMR  144 (300)
Q Consensus        65 ~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr  144 (300)
                      .++.-+..|     .|-..+-||.+-....+.+|..++-|+-+++..+.    +.++.+.++-....++|.|+++++.=.
T Consensus         5 ~~~~L~~iq-----~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~----~~~~e~e~le~qv~~~e~ei~~~r~r~   75 (239)
T COG1579           5 NLKSLLAIQ-----KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALE----ALEIELEDLENQVSQLESEIQEIRERI   75 (239)
T ss_pred             HHHHHHHHH-----HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555     46667778888888888888888888877764333    344445556666667777766554422


Q ss_pred             HH---HHHHHHHHHHHHHHHHHhH-hhcccHHHHHHHHHHHHHHHHHHHHhh
Q 038916          145 SE---LLKVQADIKELTAVRQELT-DLQQVPALKAEIENVKQELQRARAAIE  192 (300)
Q Consensus       145 ~E---l~ql~aE~q~L~a~RqEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e  192 (300)
                      +.   .+..-.+.+.+.++-.|++ -..++..+..||..+..++......++
T Consensus        76 ~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~  127 (239)
T COG1579          76 KRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIE  127 (239)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21   1122233344444444443 122334444444444444444333333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.22  E-value=0.13  Score=55.04  Aligned_cols=18  Identities=22%  Similarity=0.228  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 038916           92 VALKQELEVAQYELQRMV  109 (300)
Q Consensus        92 ~aLrqeLaa~~~Elq~L~  109 (300)
                      ..|+.|+...+-|||.+.
T Consensus       421 ~rLE~dvkkLraeLq~~R  438 (697)
T PF09726_consen  421 SRLEADVKKLRAELQSSR  438 (697)
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            456666666666666655

; GO: 0016021 integral to membrane

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=96.11  E-value=0.0058  Score=65.39  Aligned_cols=23  Identities=17%  Similarity=0.349  Sum_probs=15.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHH
Q 038916          203 EHGQVMEKKLISMARELEKLRAE  225 (300)
Q Consensus       203 eQ~qaMeknlisMarEvekLRae  225 (300)
                      ||+..++-.|+++.---|.+|+.
T Consensus       792 e~vnniKP~i~avt~ACEE~rkS  814 (1102)
T KOG1924|consen  792 EQVNNIKPDIVAVTAACEELRKS  814 (1102)
T ss_pred             HHHhhcChHHHHHHHHHHHHHhh
Confidence            56666777777777666666654

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.95  E-value=0.34  Score=46.83  Aligned_cols=106  Identities=25%  Similarity=0.341  Sum_probs=72.8

Q ss_pred             HHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhh-cccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhh
Q 038916          126 MYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDL-QQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEH  204 (300)
Q Consensus       126 l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~-qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ  204 (300)
                      +..+-..|+.++..++.+..++..  .|..+|..+|++|++. .+|.+.+++|+.++.|+......++-=.....+..++
T Consensus       182 l~~~~~~L~~e~~~Lk~~~~e~~~--~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~e  259 (325)
T PF08317_consen  182 LRERKAELEEELENLKQLVEEIES--CDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAE  259 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445666677766666666332  4556888888888743 4577888888888888888888777666556666666


Q ss_pred             hHHHHHHHHH----HHHHHHHHHHHHHhHHHHH
Q 038916          205 GQVMEKKLIS----MARELEKLRAEIANSEKRA  233 (300)
Q Consensus       205 ~qaMeknlis----MarEvekLRael~n~ekR~  233 (300)
                      +...++-+..    =..||.+|++.+..-++..
T Consensus       260 I~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~  292 (325)
T PF08317_consen  260 IAEAEKIREECRGWTRSEVKRLKAKVDALEKLT  292 (325)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            6666655542    3568888888887777653

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=95.74  E-value=0.83  Score=40.46  Aligned_cols=21  Identities=29%  Similarity=0.363  Sum_probs=9.9

Q ss_pred             hhhhccchhhhHHHHHHHHHH
Q 038916           80 LLADNQRLAATHVALKQELEV  100 (300)
Q Consensus        80 L~~dNqRLa~~h~aLrqeLaa  100 (300)
                      ++.+|-.......+-+.++..
T Consensus        31 ~l~~~~~~~~~~~vtk~d~e~   51 (177)
T PF07798_consen   31 VLNDSLEKVAQDLVTKSDLEN   51 (177)
T ss_pred             HHHHHHHHHHHHHHhHHHHHH
Confidence            444444444444455555544

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=95.71  E-value=1.8  Score=43.80  Aligned_cols=88  Identities=20%  Similarity=0.308  Sum_probs=56.6

Q ss_pred             HHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHH
Q 038916           71 AAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKV  150 (300)
Q Consensus        71 a~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql  150 (300)
                      ..-..|++.-..|-+-.-.....+++++..+++|+.++.....+++.  +  +-.+.+...|+|++.+++-   .+-.+|
T Consensus       105 ~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqt--r--l~~l~~qr~ql~aq~qsl~---a~~k~L  177 (499)
T COG4372         105 EAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQT--R--LKTLAEQRRQLEAQAQSLQ---ASQKQL  177 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            33345667666666666666778999999999999999855554443  2  3456777788888888644   333344


Q ss_pred             HHHHHHHHHHHHHhH
Q 038916          151 QADIKELTAVRQELT  165 (300)
Q Consensus       151 ~aE~q~L~a~RqEL~  165 (300)
                      .+-+-+|..-+.+|.
T Consensus       178 Q~s~~Qlk~~~~~L~  192 (499)
T COG4372         178 QASATQLKSQVLDLK  192 (499)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444444444

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.63  E-value=0.69  Score=44.69  Aligned_cols=59  Identities=36%  Similarity=0.434  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916          173 LKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEK  231 (300)
Q Consensus       173 l~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ek  231 (300)
                      +..+|..+|+||......++.-++.-.+.-.|++.++..+..+..+.++|.++|..+++
T Consensus       207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~  265 (325)
T PF08317_consen  207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK  265 (325)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888888888888888888888888899999999999999999999999999887

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.60  E-value=0.47  Score=52.47  Aligned_cols=161  Identities=20%  Similarity=0.306  Sum_probs=97.9

Q ss_pred             HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH----HHHHHHHHHHhHHhhh-
Q 038916           64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQ----MREMYDKSVQLEVDLR-  138 (300)
Q Consensus        64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq----~r~l~~k~~K~EaElr-  138 (300)
                      ...+.+|+.-..||+.|=.    .+.-.--|+++|....+|+--+.   .++.....-+    +-++.+.+-.++.++. 
T Consensus       687 ~~~q~el~~le~eL~~le~----~~~kf~~l~~ql~l~~~~l~l~~---~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike  759 (1174)
T KOG0933|consen  687 RAIQKELEALERELKSLEA----QSQKFRDLKQQLELKLHELALLE---KRLEQNEFHKLLDDLKELLEEVEESEQQIKE  759 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH---HHHhcChHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            6677777777777775543    34445678999999999885543   2222211100    1222222223333332 


Q ss_pred             ---hhHHHHHHHHHHHHHHHH--------HHHHHHHhH-hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhH
Q 038916          139 ---GVEAMRSELLKVQADIKE--------LTAVRQELT-DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQ  206 (300)
Q Consensus       139 ---a~e~lr~El~ql~aE~q~--------L~a~RqEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~q  206 (300)
                         ++...-+++..++.+.+.        |..+-.||. -.+++.+-..+++.-++|.++....+|..++....+=.|+.
T Consensus       760 ~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~  839 (1174)
T KOG0933|consen  760 KERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLE  839 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               222222233334433332        222333332 23456777777888888888888888888877777888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916          207 VMEKKLISMARELEKLRAEIANSEK  231 (300)
Q Consensus       207 aMeknlisMarEvekLRael~n~ek  231 (300)
                      .+++++.++..|+..|++.|.++++
T Consensus       840 ~~~~~~~~l~~e~~~l~~kv~~~~~  864 (1174)
T KOG0933|consen  840 QLEKQISSLKSELGNLEAKVDKVEK  864 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            9999999999999999998887765

>PRK04863 mukB cell division protein MukB; Provisional

Probab=95.58  E-value=1  Score=51.98  Aligned_cols=141  Identities=14%  Similarity=0.176  Sum_probs=81.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh-h--------------------hHHHHHHHHHHHHHhHHhhhhhHHHHH
Q 038916           87 LAATHVALKQELEVAQYELQRMVHYADSFRM-D--------------------KDVQMREMYDKSVQLEVDLRGVEAMRS  145 (300)
Q Consensus        87 La~~h~aLrqeLaa~~~Elq~L~~~i~~~r~-e--------------------~Elq~r~l~~k~~K~EaElra~e~lr~  145 (300)
                      +-.++...++.+..++.-|+.|...++.+.+ .                    .+-....+...+.++|.++..+..--+
T Consensus       856 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~y~~~~~~~L~qLE~~l~~L~~Dp~  935 (1486)
T PRK04863        856 HESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPE  935 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            4556667777777778888777777766655 1                    111133334444444444443333233


Q ss_pred             HHHHHHHHHHHHHHHHHHhH-------------------h--------hcccHHHHHHHHHHHHHHHHHHHHhhhhhhch
Q 038916          146 ELLKVQADIKELTAVRQELT-------------------D--------LQQVPALKAEIENVKQELQRARAAIEFDKKGY  198 (300)
Q Consensus       146 El~ql~aE~q~L~a~RqEL~-------------------d--------~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~  198 (300)
                      +..+++.+.+......+.+.                   |        ..-.+.++++|..+.++...++..+..-++.+
T Consensus       936 ~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~ 1015 (1486)
T PRK04863        936 QFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQL 1015 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444433                   1        11256677777777777777777777766666


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916          199 AENYEHGQVMEKKLISMARELEKLRAEIA  227 (300)
Q Consensus       199 ~e~~eQ~qaMeknlisMarEvekLRael~  227 (300)
                      ...-+.+..+++++....++++.+..+|.
T Consensus      1016 ~q~~q~l~slksslq~~~e~L~E~eqe~~ 1044 (1486)
T PRK04863       1016 AQYNQVLASLKSSYDAKRQMLQELKQELQ 1044 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666667777777777777777766664

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=95.37  E-value=2.5  Score=47.44  Aligned_cols=59  Identities=24%  Similarity=0.325  Sum_probs=33.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 038916          170 VPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIAN  228 (300)
Q Consensus       170 v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n  228 (300)
                      +..+..+++.++.++...-..+..-+....+.-.++..++.++..+..++++++..+..
T Consensus       858 ~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  916 (1163)
T COG1196         858 LEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEE  916 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555555555555554444444555556666666666666666666666654

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=95.36  E-value=2.4  Score=43.71  Aligned_cols=24  Identities=38%  Similarity=0.588  Sum_probs=17.1

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhh
Q 038916          169 QVPALKAEIENVKQELQRARAAIE  192 (300)
Q Consensus       169 Qv~al~aEl~~lRqEl~r~R~a~e  192 (300)
                      .|..|..+|..++.||..++....
T Consensus       338 ~v~~L~~eL~~~r~eLea~~~~e~  361 (522)
T PF05701_consen  338 EVSSLEAELNKTRSELEAAKAEEE  361 (522)
T ss_pred             HHhhHHHHHHHHHHHHHHHHhhhc
Confidence            477788888888888876655543

Several sequences in this family are described as being myosin heavy chain-like.

>TIGR00606 rad50 rad50

Probab=95.34  E-value=0.81  Score=51.85  Aligned_cols=62  Identities=18%  Similarity=0.343  Sum_probs=43.7

Q ss_pred             cHHHHHHHHHHHHHHHHH---HHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916          170 VPALKAEIENVKQELQRA---RAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEK  231 (300)
Q Consensus       170 v~al~aEl~~lRqEl~r~---R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ek  231 (300)
                      +..+..+.+.+..+|..+   ...+.-++-.....+++.+.++..|..+..|++.++.+|...++
T Consensus       845 ~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~  909 (1311)
T TIGR00606       845 IELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKE  909 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555   44455556566667888889999999999999999998877665

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=95.29  E-value=2  Score=48.52  Aligned_cols=67  Identities=25%  Similarity=0.311  Sum_probs=41.0

Q ss_pred             hcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038916          167 LQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRA  233 (300)
Q Consensus       167 ~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~  233 (300)
                      .+++....++++..+++...+.++...-+....+.-.+...-+..+....++++++++.++..+..+
T Consensus       468 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L  534 (1201)
T PF12128_consen  468 KEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL  534 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3455555566666665555555555544444444444555556677777788888888887766654

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=95.14  E-value=2.3  Score=44.56  Aligned_cols=143  Identities=22%  Similarity=0.293  Sum_probs=86.4

Q ss_pred             hccchhhhHH---HHHHHHHHHHHHHHHHHhhh----hhhh--hhhHHH-HHHHHHHH----HHhHHhhhhhHHHHHHHH
Q 038916           83 DNQRLAATHV---ALKQELEVAQYELQRMVHYA----DSFR--MDKDVQ-MREMYDKS----VQLEVDLRGVEAMRSELL  148 (300)
Q Consensus        83 dNqRLa~~h~---aLrqeLaa~~~Elq~L~~~i----~~~r--~e~Elq-~r~l~~k~----~K~EaElra~e~lr~El~  148 (300)
                      =|-|||....   -|+.+=-....||..|....    .+++  .|.|+- .+.+++.+    .|+|.|+..+..=-+++.
T Consensus        47 LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr  126 (546)
T KOG0977|consen   47 LNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELR  126 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            4778887764   45556556666665554322    2222  255555 44444444    445544443322112211


Q ss_pred             HHHHHH-HHHHHHHHHhHh----------------------hcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhh
Q 038916          149 KVQADI-KELTAVRQELTD----------------------LQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHG  205 (300)
Q Consensus       149 ql~aE~-q~L~a~RqEL~d----------------------~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~  205 (300)
                      +...+. +.+...|.++.+                      .-.+.-|++|+..|+.+|.++|..++.|--...+.--++
T Consensus       127 ~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~  206 (546)
T KOG0977|consen  127 KKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRV  206 (546)
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            111111 122233333320                      123677889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH----HHHHHHHHH
Q 038916          206 QVMEKKLISMA----RELEKLRAE  225 (300)
Q Consensus       206 qaMeknlisMa----rEvekLRae  225 (300)
                      |.+..+|.-|.    +||.-+|.-
T Consensus       207 q~Lleel~f~~~~h~~eI~e~~~~  230 (546)
T KOG0977|consen  207 QTLLEELAFLKRIHKQEIEEERRK  230 (546)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHH
Confidence            99999999998    666655543

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.05  E-value=0.31  Score=47.21  Aligned_cols=121  Identities=20%  Similarity=0.327  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH-hhcccH
Q 038916           93 ALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT-DLQQVP  171 (300)
Q Consensus        93 aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~-d~qQv~  171 (300)
                      .|+.++..+..|......+...++.+...     -.....++.+++   .+..|-..+..++++|+..+.+|. +..++.
T Consensus        13 ~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~-----~~~~~~~~~el~---~le~Ee~~l~~eL~~LE~e~~~l~~el~~le   84 (314)
T PF04111_consen   13 QLDKQLEQAEKERDTYQEFLKKLEEESDS-----EEDIEELEEELE---KLEQEEEELLQELEELEKEREELDQELEELE   84 (314)
T ss_dssp             ----------------------------------HH--HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----chHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777777778877777666666621111     111222332222   344444555556666666666553 123333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 038916          172 ALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRA  224 (300)
Q Consensus       172 al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRa  224 (300)
                      .-..+|+....++-+....+..++   .+..+..+.++..+..+...+++||.
T Consensus        85 ~e~~~l~~eE~~~~~~~n~~~~~l---~~~~~e~~sl~~q~~~~~~~L~~L~k  134 (314)
T PF04111_consen   85 EELEELDEEEEEYWREYNELQLEL---IEFQEERDSLKNQYEYASNQLDRLRK  134 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444445555555555555   44445555666666666666666654

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>TIGR00606 rad50 rad50

Probab=95.00  E-value=1.4  Score=50.01  Aligned_cols=29  Identities=21%  Similarity=0.291  Sum_probs=13.6

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916          198 YAENYEHGQVMEKKLISMARELEKLRAEIA  227 (300)
Q Consensus       198 ~~e~~eQ~qaMeknlisMarEvekLRael~  227 (300)
                      ..+++..++ .+.++..+..+|..|..+++
T Consensus      1017 l~dnL~~~~-~~~~l~el~~eI~~l~~~~~ 1045 (1311)
T TIGR00606      1017 LQDNLTLRK-RENELKEVEEELKQHLKEMG 1045 (1311)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            333333333 34455555555555554444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK02224 chromosome segregation protein; Provisional

Probab=94.89  E-value=2.3  Score=45.65  Aligned_cols=23  Identities=26%  Similarity=0.458  Sum_probs=11.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhh
Q 038916          170 VPALKAEIENVKQELQRARAAIE  192 (300)
Q Consensus       170 v~al~aEl~~lRqEl~r~R~a~e  192 (300)
                      +..+..+|..++.|+...+.+++
T Consensus       379 l~~~~~~l~~l~~el~el~~~l~  401 (880)
T PRK02224        379 VEDRREEIEELEEEIEELRERFG  401 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            44445555555555555555554

>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]

Probab=94.85  E-value=0.95  Score=44.49  Aligned_cols=83  Identities=30%  Similarity=0.422  Sum_probs=61.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHh-HhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHH
Q 038916          140 VEAMRSELLKVQADIKELTAVRQEL-TDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARE  218 (300)
Q Consensus       140 ~e~lr~El~ql~aE~q~L~a~RqEL-~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarE  218 (300)
                      +-.+-+||.++++++..   ++.-+ .++-||+.|+++++++|+||.+.++++--.-+.-            .+...+-|
T Consensus       225 vs~Le~eL~~iqaqL~t---vks~m~~~nPqi~~LkarieSlrkql~qe~q~isag~~~~------------sl~~qaAe  289 (372)
T COG3524         225 VSKLEDELIVIQAQLDT---VKSVMNPENPQIPGLKARIESLRKQLLQEKQAISAGGSSQ------------SLSNQAAE  289 (372)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCcc------------chhHHHHH
Confidence            34566777788885444   44444 3679999999999999999999999987654321            56777888


Q ss_pred             HHHHHHHHHhHHHHHHHHH
Q 038916          219 LEKLRAEIANSEKRARAAA  237 (300)
Q Consensus       219 vekLRael~n~ekR~ra~~  237 (300)
                      .|+|=-|-..|+|-..|+.
T Consensus       290 fq~l~lE~~fAekay~AAl  308 (372)
T COG3524         290 FQRLYLENTFAEKAYAAAL  308 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8888888777887555543

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=94.85  E-value=4.2  Score=46.61  Aligned_cols=38  Identities=16%  Similarity=0.071  Sum_probs=15.6

Q ss_pred             HHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHH
Q 038916           67 EEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYE  104 (300)
Q Consensus        67 Ee~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~E  104 (300)
                      +.+|+.-..+|..|-.....+......|.+.+.....|
T Consensus       741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e  778 (1353)
T TIGR02680       741 LRRIAELDARLAAVDDELAELARELRALGARQRALADE  778 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444333334444444444444433333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.81  E-value=3.4  Score=43.58  Aligned_cols=133  Identities=19%  Similarity=0.250  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhh------------------hHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHH
Q 038916           93 ALKQELEVAQYELQRMVHYADSFRMD------------------KDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADI  154 (300)
Q Consensus        93 aLrqeLaa~~~Elq~L~~~i~~~r~e------------------~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~  154 (300)
                      -|+-++..+.+||..+..+.+..+..                  .=..-.....++++||.||+   .++.+|..++.|.
T Consensus        54 Eleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLK---q~r~el~~~q~E~  130 (772)
T KOG0999|consen   54 ELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELK---QLRQELTNVQEEN  130 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            34555566666666666555554441                  11112345678999999988   5667788888888


Q ss_pred             HHHHHHHHHhHhhcc-----cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHH---HHHHHHHHHHHHHHH
Q 038916          155 KELTAVRQELTDLQQ-----VPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKK---LISMARELEKLRAEI  226 (300)
Q Consensus       155 q~L~a~RqEL~d~qQ-----v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMekn---lisMarEvekLRael  226 (300)
                      ..|...-+++-+..+     =.-|++||-..+-==+|.-+-+.-=---|+..-.|+..+..+   +++++.||-+|-.++
T Consensus       131 erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~  210 (772)
T KOG0999|consen  131 ERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEET  210 (772)
T ss_pred             HHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence            888888887763221     233555555443322333333221111234444455555443   667777777776666


Q ss_pred             Hh
Q 038916          227 AN  228 (300)
Q Consensus       227 ~n  228 (300)
                      +.
T Consensus       211 el  212 (772)
T KOG0999|consen  211 EL  212 (772)
T ss_pred             HH
Confidence            53

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=94.77  E-value=1.5  Score=47.58  Aligned_cols=90  Identities=23%  Similarity=0.274  Sum_probs=63.4

Q ss_pred             HHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhh--------------------hhhHHHHHHHHHH
Q 038916           70 LAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFR--------------------MDKDVQMREMYDK  129 (300)
Q Consensus        70 la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r--------------------~e~Elq~r~l~~k  129 (300)
                      +..-..+.+.+-.+|+++..+...|+.+| -++.|+.+|..-..+..                    +|+|-..+++..-
T Consensus        55 l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~l  133 (775)
T PF10174_consen   55 LSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERL  133 (775)
T ss_pred             HHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556788889999999999999999999 99999999986533332                    3555555555544


Q ss_pred             HHHhHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 038916          130 SVQLEVDLRGVEAMRSELLKVQADIKELTAV  160 (300)
Q Consensus       130 ~~K~EaElra~e~lr~El~ql~aE~q~L~a~  160 (300)
                      .-++|.=--.++.++.++.....++.+|...
T Consensus       134 r~~lE~~q~~~e~~q~~l~~~~eei~kL~e~  164 (775)
T PF10174_consen  134 RKTLEELQLRIETQQQTLDKADEEIEKLQEM  164 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444432233667777777777777777664

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>smart00787 Spc7 Spc7 kinetochore protein

Probab=94.70  E-value=2.1  Score=41.65  Aligned_cols=63  Identities=24%  Similarity=0.229  Sum_probs=28.9

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHH----HHHHHHHHHHHHhHHH
Q 038916          169 QVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISM----ARELEKLRAEIANSEK  231 (300)
Q Consensus       169 Qv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisM----arEvekLRael~n~ek  231 (300)
                      ++...+.+|+.+++++......|+.-++...+..++++..++-+..-    ..||.+|++.+..-++
T Consensus       219 ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~  285 (312)
T smart00787      219 EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS  285 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            34444444555555555555555444444444444444444433221    3445555555444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=94.62  E-value=3.3  Score=49.04  Aligned_cols=31  Identities=23%  Similarity=0.382  Sum_probs=12.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhchhh
Q 038916          170 VPALKAEIENVKQELQRARAAIEFDKKGYAE  200 (300)
Q Consensus       170 v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e  200 (300)
                      |..|.+.|..+.++|...|++..-..+...+
T Consensus      1099 i~eL~~~i~el~e~le~er~~r~K~ek~r~d 1129 (1930)
T KOG0161|consen 1099 IKELEARIKELEEELEAERASRAKAERQRRD 1129 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444433333333333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=94.59  E-value=8  Score=41.67  Aligned_cols=82  Identities=17%  Similarity=0.287  Sum_probs=40.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhh-------hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCC
Q 038916          170 VPALKAEIENVKQELQRARAAIEFDKKGYAENY-------EHGQVMEKKLISMARELEKLRAEIANSEKRARAAAAVGNP  242 (300)
Q Consensus       170 v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~-------eQ~qaMeknlisMarEvekLRael~n~ekR~ra~~a~~~p  242 (300)
                      +..|...|..|+.+-+++-..+-.|-+-..+..       -|+...+..|..=-+||.-|++-|+        .+-+--|
T Consensus       589 ~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~--------~~~av~p  660 (697)
T PF09726_consen  589 TEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIA--------QLLAVMP  660 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhcCC
Confidence            344444444555555555555555544433333       3444455555555556666665553        2222235


Q ss_pred             CCCcccCCCCCCCCCCC
Q 038916          243 GASFNTNYGTPEAGYPS  259 (300)
Q Consensus       243 ~~~y~~~~gnp~~~y~~  259 (300)
                      ...|+.+.+.+...|..
T Consensus       661 ~~~~~~~~~~~~~~~~~  677 (697)
T PF09726_consen  661 SDSYCSAITPPTPHYSS  677 (697)
T ss_pred             ccccccCCCCCCccchh
Confidence            55676555555555554

; GO: 0016021 integral to membrane

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=94.59  E-value=1.4  Score=40.71  Aligned_cols=23  Identities=43%  Similarity=0.657  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHH
Q 038916          209 EKKLISMARELEKLRAEIANSEK  231 (300)
Q Consensus       209 eknlisMarEvekLRael~n~ek  231 (300)
                      ...+.++.+||++||++|..+..
T Consensus       130 ~~~~~~l~~e~erL~aeL~~er~  152 (202)
T PF06818_consen  130 EDELGSLRREVERLRAELQRERQ  152 (202)
T ss_pred             cccchhHHHHHHHHHHHHHHHHH
Confidence            34588889999999999886544

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=94.58  E-value=3.2  Score=49.21  Aligned_cols=113  Identities=19%  Similarity=0.286  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH----HHHHHHHHhH-----hhcccHHHHHHHHHHHHHHHHHHHHhhh
Q 038916          123 MREMYDKSVQLEVDLRGVEAMRSELLKVQADIK----ELTAVRQELT-----DLQQVPALKAEIENVKQELQRARAAIEF  193 (300)
Q Consensus       123 ~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q----~L~a~RqEL~-----d~qQv~al~aEl~~lRqEl~r~R~a~e~  193 (300)
                      .-.+.....|+|.++..++..-++=.+.++|+.    +|..--+.+.     -..++..+..++....-||...-+-++.
T Consensus      1008 ~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~ 1087 (1930)
T KOG0161|consen 1008 AKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLED 1087 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            344455555666666555443333333333333    2222111111     1345666667777777788888888888


Q ss_pred             hhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 038916          194 DKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRARA  235 (300)
Q Consensus       194 Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~ra  235 (300)
                      +.......-.+++-++..+.-+..+++..|+..+.++|..+.
T Consensus      1088 e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~d 1129 (1930)
T KOG0161|consen 1088 EQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRD 1129 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887777777888888888888888888888888888775443

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.58  E-value=5.9  Score=41.59  Aligned_cols=38  Identities=18%  Similarity=0.246  Sum_probs=20.4

Q ss_pred             HHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhh
Q 038916           74 HQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHY  111 (300)
Q Consensus        74 ~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~  111 (300)
                      ..+...|=.++.-|-.....|+.+|...+.+...|...
T Consensus       156 ~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~  193 (546)
T PF07888_consen  156 LKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ  193 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555566666666555555443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>smart00787 Spc7 Spc7 kinetochore protein

Probab=94.55  E-value=3.3  Score=40.28  Aligned_cols=84  Identities=25%  Similarity=0.357  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHH
Q 038916          143 MRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKL  222 (300)
Q Consensus       143 lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekL  222 (300)
                      +++....+..|+..|.....|+.+.     +..||+.+|.+|...-..++.-++...+.-+|++.++..|.....+.+.+
T Consensus       177 l~~~~~~L~~e~~~L~~~~~e~~~~-----d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~  251 (312)
T smart00787      177 LRDRKDALEEELRQLKQLEDELEDC-----DPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSEL  251 (312)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHhC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555554211     13456666666666666666666667777889999999999999999999


Q ss_pred             HHHHHhHHH
Q 038916          223 RAEIANSEK  231 (300)
Q Consensus       223 Rael~n~ek  231 (300)
                      +.+|..+++
T Consensus       252 ~~~I~~ae~  260 (312)
T smart00787      252 NTEIAEAEK  260 (312)
T ss_pred             HHHHHHHHH
Confidence            999998888

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=94.32  E-value=6  Score=44.76  Aligned_cols=23  Identities=39%  Similarity=0.654  Sum_probs=13.8

Q ss_pred             hhcccHHHHHHHHHHHHHHHHHH
Q 038916          166 DLQQVPALKAEIENVKQELQRAR  188 (300)
Q Consensus       166 d~qQv~al~aEl~~lRqEl~r~R  188 (300)
                      |...|..++.+|..+.++|....
T Consensus       769 D~~~I~~l~~~i~~L~~~l~~ie  791 (1201)
T PF12128_consen  769 DPERIQQLKQEIEQLEKELKRIE  791 (1201)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666665543

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=94.29  E-value=3.8  Score=38.70  Aligned_cols=53  Identities=19%  Similarity=0.357  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 038916          143 MRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKG  197 (300)
Q Consensus       143 lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~  197 (300)
                      +++++..++.++..|.-...+|+  .++..++..+..++.++.-.++.++.+.+.
T Consensus       101 ak~r~~~le~el~~l~~~~~~l~--~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~  153 (239)
T COG1579         101 AKERINSLEDELAELMEEIEKLE--KEIEDLKERLERLEKNLAEAEARLEEEVAE  153 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555444442  245556666666666666666666665533

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=94.27  E-value=5.2  Score=40.17  Aligned_cols=62  Identities=8%  Similarity=0.147  Sum_probs=31.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhh-------------hhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916          170 VPALKAEIENVKQELQRARAAIEFD-------------KKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEK  231 (300)
Q Consensus       170 v~al~aEl~~lRqEl~r~R~a~e~E-------------kk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ek  231 (300)
                      +..+..+|+.++.++..+++.+.--             .+...-.-+.......+|.....++..++++++.++.
T Consensus       238 ~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~  312 (457)
T TIGR01000       238 LATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKE  312 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445566666666666666555431             1111111112234556666666666666666665554

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=94.23  E-value=4.4  Score=41.82  Aligned_cols=71  Identities=14%  Similarity=0.203  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916           92 VALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQ  162 (300)
Q Consensus        92 ~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~Rq  162 (300)
                      ...-.+|..+++||+.+..-.++..-++..=.-..-+-...++.-.+.++.|..||..+...+..+.....
T Consensus       126 ~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~  196 (522)
T PF05701_consen  126 ASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHI  196 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445566777777777655555544444444444444445555556666777776666666665544333

Several sequences in this family are described as being myosin heavy chain-like.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=94.23  E-value=2.4  Score=44.07  Aligned_cols=138  Identities=17%  Similarity=0.352  Sum_probs=93.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh------hHH--HHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHH
Q 038916           87 LAATHVALKQELEVAQYELQRMVHYADSFRMD------KDV--QMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELT  158 (300)
Q Consensus        87 La~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e------~El--q~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~  158 (300)
                      ..=.|..+..++...+..|..+...+.++.++      .++  ++..+|+   .||.|+.|-..|...+..+...+..+.
T Consensus       243 y~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd---~le~E~~Ak~~V~~~~~~l~~~l~~~~  319 (560)
T PF06160_consen  243 YYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYD---ILEKEVEAKKYVEKNLKELYEYLEHAK  319 (560)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            34445677777888888887777777777664      122  1344443   467777776667766666666555555


Q ss_pred             HHHHHhH---------------hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 038916          159 AVRQELT---------------DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLR  223 (300)
Q Consensus       159 a~RqEL~---------------d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLR  223 (300)
                      ..-.+|.               +...+..+..+|..+...+......++..+..|....+.+..+.++|..+..+...+.
T Consensus       320 ~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~  399 (560)
T PF06160_consen  320 EQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEIN  399 (560)
T ss_pred             HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5444444               5667888889999999999999999998888888777777777666666665555555


Q ss_pred             HHHH
Q 038916          224 AEIA  227 (300)
Q Consensus       224 ael~  227 (300)
                      ..|.
T Consensus       400 ~~l~  403 (560)
T PF06160_consen  400 ESLQ  403 (560)
T ss_pred             HHHH
Confidence            5554

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PHA02562 46 endonuclease subunit; Provisional

Probab=94.15  E-value=7.3  Score=39.43  Aligned_cols=7  Identities=29%  Similarity=0.662  Sum_probs=3.6

Q ss_pred             HHHHHHH
Q 038916           64 AIIEEHL   70 (300)
Q Consensus        64 ~~lEe~l   70 (300)
                      .+|++-+
T Consensus       154 ~il~~l~  160 (562)
T PHA02562        154 KLVEDLL  160 (562)
T ss_pred             HHHHHHh
Confidence            4555544

>PRK02224 chromosome segregation protein; Provisional

Probab=94.11  E-value=6.8  Score=42.12  Aligned_cols=19  Identities=21%  Similarity=0.337  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 038916          208 MEKKLISMARELEKLRAEI  226 (300)
Q Consensus       208 MeknlisMarEvekLRael  226 (300)
                      +.+.+..+..++..++.++
T Consensus       347 ~~~~~~~le~~~~~l~~~~  365 (880)
T PRK02224        347 LREDADDLEERAEELREEA  365 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444333

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.08  E-value=4.3  Score=42.67  Aligned_cols=92  Identities=22%  Similarity=0.320  Sum_probs=65.1

Q ss_pred             HHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhh-----hhhHHH-----HHHHHHHHHHhHHhhhhh---
Q 038916           74 HQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFR-----MDKDVQ-----MREMYDKSVQLEVDLRGV---  140 (300)
Q Consensus        74 ~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r-----~e~Elq-----~r~l~~k~~K~EaElra~---  140 (300)
                      ..||..+-.||++|+....+|+.+|.....-+--|..+..++.     .+++|.     +..-.+++.|||++|...   
T Consensus       330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~  409 (654)
T KOG4809|consen  330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNI  409 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999887765554444443433333     344444     444457888888887532   


Q ss_pred             ---------------------HHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916          141 ---------------------EAMRSELLKVQADIKELTAVRQELT  165 (300)
Q Consensus       141 ---------------------e~lr~El~ql~aE~q~L~a~RqEL~  165 (300)
                                           ..+++++.++++++..|..+-.|..
T Consensus       410 ~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeve  455 (654)
T KOG4809|consen  410 EDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVE  455 (654)
T ss_pred             hHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                 2355678889999999888888876

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=94.00  E-value=0.015  Score=61.47  Aligned_cols=140  Identities=20%  Similarity=0.348  Sum_probs=0.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh---hHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038916           88 AATHVALKQELEVAQYELQRMVHYADSFRMD---KDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQEL  164 (300)
Q Consensus        88 a~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e---~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL  164 (300)
                      +.....|+..+...++|+.++-....+.+.+   .|..+.+|-.++.-+-++.+....+|+|+.-++..+.++..+-.++
T Consensus       238 ~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~v  317 (713)
T PF05622_consen  238 SVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEV  317 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            3334556666666666666665444444432   2233455555555666666666677777666665555555544444


Q ss_pred             H-----------------------------------hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHH
Q 038916          165 T-----------------------------------DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVME  209 (300)
Q Consensus       165 ~-----------------------------------d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMe  209 (300)
                      .                                   +++.+.+++..|+.+++++....+.+.-+.+...........++
T Consensus       318 e~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~  397 (713)
T PF05622_consen  318 EKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLE  397 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4                                   23446666666666666666666666666655555555666666


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 038916          210 KKLISMARELEKLRAEIA  227 (300)
Q Consensus       210 knlisMarEvekLRael~  227 (300)
                      ..+.++..|.++|..+.+
T Consensus       398 ek~~~l~~eke~l~~e~~  415 (713)
T PF05622_consen  398 EKLEALEEEKERLQEERD  415 (713)
T ss_dssp             ------------------
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666666666666655554

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=93.94  E-value=5.3  Score=40.14  Aligned_cols=38  Identities=13%  Similarity=0.119  Sum_probs=27.5

Q ss_pred             hchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038916          196 KGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRA  233 (300)
Q Consensus       196 k~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~  233 (300)
                      ......+.+....+.++..+.||++-.+.-+...-+|.
T Consensus       341 ~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~  378 (498)
T TIGR03007       341 ERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRR  378 (498)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445556667778888899999988888887665554

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=93.91  E-value=4  Score=35.60  Aligned_cols=99  Identities=21%  Similarity=0.336  Sum_probs=58.9

Q ss_pred             hhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916           82 ADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVR  161 (300)
Q Consensus        82 ~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~R  161 (300)
                      .++--|-++..+|+.+|...+.+...+-.-..+.+.+-           -.|+.+   +..|..++.+++.|+..|..-+
T Consensus        17 ~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~ei-----------e~L~~e---l~~lt~el~~L~~EL~~l~sEk   82 (140)
T PF10473_consen   17 SEKDSLEDHVESLERELEMSQENKECLILDAENSKAEI-----------ETLEEE---LEELTSELNQLELELDTLRSEK   82 (140)
T ss_pred             HhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----------HHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            35555666666777777777777765553333322221           123333   3355666667777777777666


Q ss_pred             HHhH-hhcccHHHHHHHHHHHHHHHHHHHHhhhh
Q 038916          162 QELT-DLQQVPALKAEIENVKQELQRARAAIEFD  194 (300)
Q Consensus       162 qEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e~E  194 (300)
                      .+|+ .+|+...-+.||+.+.-.+.+.-.-.+.|
T Consensus        83 ~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e  116 (140)
T PF10473_consen   83 ENLDKELQKKQEKVSELESLNSSLENLLQEKEQE  116 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            6665 45555566667777776666666666666

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK03918 chromosome segregation protein; Provisional

Probab=93.86  E-value=9.9  Score=40.75  Aligned_cols=14  Identities=29%  Similarity=0.337  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHHHH
Q 038916           94 LKQELEVAQYELQR  107 (300)
Q Consensus        94 LrqeLaa~~~Elq~  107 (300)
                      |++++.....+|..
T Consensus       198 l~~~~~~l~~ei~~  211 (880)
T PRK03918        198 KEKELEEVLREINE  211 (880)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=93.82  E-value=9.1  Score=43.14  Aligned_cols=35  Identities=29%  Similarity=0.385  Sum_probs=18.7

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038916          199 AENYEHGQVMEKKLISMARELEKLRAEIANSEKRA  233 (300)
Q Consensus       199 ~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~  233 (300)
                      ...-++...++++|..+..++.+++.++.....+.
T Consensus       880 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  914 (1163)
T COG1196         880 KELEEEKEELEEELRELESELAELKEEIEKLRERL  914 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555555555555666665555554444

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=93.74  E-value=3.4  Score=42.95  Aligned_cols=142  Identities=15%  Similarity=0.326  Sum_probs=76.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh------HH--HHHHHHHHHHHhHHhhhhhHHHHHH-------HHHHHH
Q 038916           88 AATHVALKQELEVAQYELQRMVHYADSFRMDK------DV--QMREMYDKSVQLEVDLRGVEAMRSE-------LLKVQA  152 (300)
Q Consensus        88 a~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~------El--q~r~l~~k~~K~EaElra~e~lr~E-------l~ql~a  152 (300)
                      .=+|..+..++...+..|......+.++.++.      ++  ++-.+++   .||.|+.|-..+...       +.+++.
T Consensus       248 ~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd---~lekE~~A~~~vek~~~~l~~~l~~~~e  324 (569)
T PRK04778        248 HLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYD---ILEREVKARKYVEKNSDTLPDFLEHAKE  324 (569)
T ss_pred             CCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            33445666677777777766666666666641      11  1333333   233444433333333       333333


Q ss_pred             HHHHHHHHHHHhH--------hhcccHHHHHHHHHHHHHHHHHHHHhhhh-------hhchhhhhhhhHHHHHHHHHHHH
Q 038916          153 DIKELTAVRQELT--------DLQQVPALKAEIENVKQELQRARAAIEFD-------KKGYAENYEHGQVMEKKLISMAR  217 (300)
Q Consensus       153 E~q~L~a~RqEL~--------d~qQv~al~aEl~~lRqEl~r~R~a~e~E-------kk~~~e~~eQ~qaMeknlisMar  217 (300)
                      ..+.|...-..|.        +...+..+..+|..+..++......++.-       ++...+..+++..++++...+..
T Consensus       325 ~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e  404 (569)
T PRK04778        325 QNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSE  404 (569)
T ss_pred             HHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333222222222        33446667777776666666554444433       34445566667777777788888


Q ss_pred             HHHHHHHHHHhHHHH
Q 038916          218 ELEKLRAEIANSEKR  232 (300)
Q Consensus       218 EvekLRael~n~ekR  232 (300)
                      .|+.||.+...++++
T Consensus       405 ~l~~Lrk~E~eAr~k  419 (569)
T PRK04778        405 MLQGLRKDELEAREK  419 (569)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888888877766553

>PRK04863 mukB cell division protein MukB; Provisional

Probab=93.70  E-value=7.3  Score=45.34  Aligned_cols=55  Identities=16%  Similarity=0.229  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 038916          178 ENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKR  232 (300)
Q Consensus       178 ~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR  232 (300)
                      +.|.+.|...|+..++=.|.....-..+..++++|....+++..+|.+|.+++++
T Consensus      1063 ~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~ 1117 (1486)
T PRK04863       1063 DELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAG 1117 (1486)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777788888877777666667777889999999999999999999999999885

>PF13514 AAA_27: AAA domain

Probab=93.70  E-value=8  Score=43.28  Aligned_cols=64  Identities=23%  Similarity=0.271  Sum_probs=38.2

Q ss_pred             HHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh-----hHHHHHHHHHHHHHhHHhhh
Q 038916           75 QDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMD-----KDVQMREMYDKSVQLEVDLR  138 (300)
Q Consensus        75 ~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e-----~Elq~r~l~~k~~K~EaElr  138 (300)
                      .|+++=+.+..--+.+...|++++..++++++.|..-+.+++.+     +=.+...++.+...+++++.
T Consensus       160 ~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~  228 (1111)
T PF13514_consen  160 KELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELA  228 (1111)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            33444444555556666777777777777777777666666553     33445555666666655554

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=93.67  E-value=3.8  Score=41.73  Aligned_cols=88  Identities=27%  Similarity=0.306  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHH----HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhh
Q 038916           64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQ----ELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRG  139 (300)
Q Consensus        64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrq----eLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra  139 (300)
                      ..+|-.--+...||.|=+.--|-+..+..+||.    +|.+.++||+.|+..-          .    .|.+..-.=.++
T Consensus       385 SAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQY----------S----QKCLEnahLaqa  450 (593)
T KOG4807|consen  385 SAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQY----------S----QKCLENAHLAQA  450 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHH----------H----HHHHHHHHHHHH
Confidence            455666667788999999999999999999984    6788888888876221          1    122222222233


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916          140 VEAMRSELLKVQADIKELTAVRQELT  165 (300)
Q Consensus       140 ~e~lr~El~ql~aE~q~L~a~RqEL~  165 (300)
                      +++-+.-|.|-.-|.|.|.+..|||.
T Consensus       451 lEaerqaLRqCQrEnQELnaHNQELn  476 (593)
T KOG4807|consen  451 LEAERQALRQCQRENQELNAHNQELN  476 (593)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence            44444455566667777777777774

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=93.62  E-value=5.8  Score=36.46  Aligned_cols=24  Identities=13%  Similarity=0.465  Sum_probs=15.7

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhh
Q 038916          169 QVPALKAEIENVKQELQRARAAIE  192 (300)
Q Consensus       169 Qv~al~aEl~~lRqEl~r~R~a~e  192 (300)
                      +|...+.+|+.++++|...+..+.
T Consensus        85 ~i~~~r~~l~~~~~~l~~~~~~l~  108 (302)
T PF10186_consen   85 RIEQKRERLEELRESLEQRRSRLS  108 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666677777776666665

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=93.61  E-value=8.6  Score=39.11  Aligned_cols=78  Identities=19%  Similarity=0.241  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHH
Q 038916          143 MRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKL  222 (300)
Q Consensus       143 lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekL  222 (300)
                      |-.+-.|+.+++|+|-+.+.+|   |   +-...|+.-+++|..--..||++-+-.+..-+++++.+++|-+.+.-.+.+
T Consensus       156 l~~qr~ql~aq~qsl~a~~k~L---Q---~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~  229 (499)
T COG4372         156 LAEQRRQLEAQAQSLQASQKQL---Q---ASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQT  229 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556666666666666666   2   223334444444443334466666555556666666666666655544444


Q ss_pred             HHHH
Q 038916          223 RAEI  226 (300)
Q Consensus       223 Rael  226 (300)
                      -.+|
T Consensus       230 ~q~i  233 (499)
T COG4372         230 AQAI  233 (499)
T ss_pred             HHHH
Confidence            4444

>PRK09039 hypothetical protein; Validated

Probab=93.60  E-value=2.5  Score=41.39  Aligned_cols=99  Identities=22%  Similarity=0.231  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhh--hhHHH-HHHHHHHHHHhHHhhhhhHHHHHHHHHHHHH--------HHHHHHH
Q 038916           92 VALKQELEVAQYELQRMVHYADSFRM--DKDVQ-MREMYDKSVQLEVDLRGVEAMRSELLKVQAD--------IKELTAV  160 (300)
Q Consensus        92 ~aLrqeLaa~~~Elq~L~~~i~~~r~--e~Elq-~r~l~~k~~K~EaElra~e~lr~El~ql~aE--------~q~L~a~  160 (300)
                      .-|.+++...++||..|...|..+--  .-|.. ...+-+++..+.+++.+.+..|+++...-+.        -.++..+
T Consensus        42 ~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l  121 (343)
T PRK09039         42 FFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGEL  121 (343)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHH
Confidence            35677777777777777666655321  11111 3334444455555555555555444432211        1223333


Q ss_pred             HHHhHhh-cccHHHHHHHHHHHHHHHHHHHH
Q 038916          161 RQELTDL-QQVPALKAEIENVKQELQRARAA  190 (300)
Q Consensus       161 RqEL~d~-qQv~al~aEl~~lRqEl~r~R~a  190 (300)
                      ..+|++. ........++..|++||...|.+
T Consensus       122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q  152 (343)
T PRK09039        122 AQELDSEKQVSARALAQVELLNQQIAALRRQ  152 (343)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            3444322 22344455555566665555554

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=93.53  E-value=7.8  Score=40.31  Aligned_cols=161  Identities=14%  Similarity=0.211  Sum_probs=101.3

Q ss_pred             HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhh-hh----hhHH--HHHHHHHHHHHhHHh
Q 038916           64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSF-RM----DKDV--QMREMYDKSVQLEVD  136 (300)
Q Consensus        64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~-r~----e~El--q~r~l~~k~~K~EaE  136 (300)
                      ..||++|+.=..++..|-.=  --+.+|+.-+.-|...+.++..|...+..+ .+    ..++  |+.+|.++..+|..+
T Consensus       168 ~~le~~l~~~e~~f~~f~~l--~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~  245 (569)
T PRK04778        168 DELEKQLENLEEEFSQFVEL--TESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEE  245 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence            56888887777666665322  234566666777777777777777766666 22    3433  466666666666654


Q ss_pred             hhhhH--HHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHH
Q 038916          137 LRGVE--AMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLIS  214 (300)
Q Consensus       137 lra~e--~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlis  214 (300)
                      -=.++  .+-.++.+++..+......=..|    .+....+.++.+..+|...-..|+.|.++...--...+.+.+.|..
T Consensus       246 gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l----~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~  321 (569)
T PRK04778        246 GYHLDHLDIEKEIQDLKEQIDENLALLEEL----DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEH  321 (569)
T ss_pred             CCCCCCCChHHHHHHHHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            33333  24556666666666655555555    5666667777777777777777777777776666666666666666


Q ss_pred             HHHHHHHHHHHHHhHH
Q 038916          215 MARELEKLRAEIANSE  230 (300)
Q Consensus       215 MarEvekLRael~n~e  230 (300)
                      +..+.+.|..+|+...
T Consensus       322 ~~e~~~~l~~Ei~~l~  337 (569)
T PRK04778        322 AKEQNKELKEEIDRVK  337 (569)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666666666665443

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=93.52  E-value=7.4  Score=43.68  Aligned_cols=149  Identities=15%  Similarity=0.257  Sum_probs=71.1

Q ss_pred             HHHHHHHhHHHHHhhhhhccchh-------hhHHHHHHHHHHHHHHHHHHHhhhhhhhhh----------hHHHHHHHHH
Q 038916           66 IEEHLAAQHQDIQGLLADNQRLA-------ATHVALKQELEVAQYELQRMVHYADSFRMD----------KDVQMREMYD  128 (300)
Q Consensus        66 lEe~la~Q~~Ei~~L~~dNqRLa-------~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e----------~Elq~r~l~~  128 (300)
                      +|++...-+.+|.....-+..+-       +....++.+..++..||..+...+++.+.+          .+-.|+.+..
T Consensus       293 ~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~  372 (1074)
T KOG0250|consen  293 KQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKK  372 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555544444333       444566777777777777777666666663          2222333333


Q ss_pred             HHHHhHHhhhhhHHHHHHHHHHHHHH-HHHHHHHHHhHh-----hcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhh
Q 038916          129 KSVQLEVDLRGVEAMRSELLKVQADI-KELTAVRQELTD-----LQQVPALKAEIENVKQELQRARAAIEFDKKGYAENY  202 (300)
Q Consensus       129 k~~K~EaElra~e~lr~El~ql~aE~-q~L~a~RqEL~d-----~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~  202 (300)
                      ..          +.++..+..++.+. +.+...+.|+.+     .++|..+...+..|++|++-....+.-+........
T Consensus       373 ~~----------d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~  442 (1074)
T KOG0250|consen  373 EV----------DRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIE  442 (1074)
T ss_pred             HH----------HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            33          23333344444444 444444444431     133455555555555555555555544433322222


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHH
Q 038916          203 EHGQVMEKKLISMARELEKLRA  224 (300)
Q Consensus       203 eQ~qaMeknlisMarEvekLRa  224 (300)
                      .-+-.+.+.+..+..+|+.|.+
T Consensus       443 ~~i~~l~k~i~~~~~~l~~lk~  464 (1074)
T KOG0250|consen  443 GEILQLRKKIENISEELKDLKK  464 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            2333344444444444444443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=93.51  E-value=6.7  Score=36.88  Aligned_cols=46  Identities=26%  Similarity=0.326  Sum_probs=36.5

Q ss_pred             HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHH
Q 038916           64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMV  109 (300)
Q Consensus        64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~  109 (300)
                      .++|..|..-+..|..+..++.+|-.....|+.++...+..+....
T Consensus        50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~   95 (312)
T PF00038_consen   50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEEL   95 (312)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            7899999999999999999998888888877777777666554443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=93.45  E-value=13  Score=40.71  Aligned_cols=55  Identities=16%  Similarity=0.271  Sum_probs=40.5

Q ss_pred             HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 038916           64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMD  118 (300)
Q Consensus        64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e  118 (300)
                      ..++-.|.--..||..|-..+.-+...+..+++.|.+.+.+|.........++++
T Consensus       290 d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsd  344 (775)
T PF10174_consen  290 DRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSD  344 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3455666667778888888888888888777888877777777766666666654

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=93.36  E-value=2.7  Score=41.23  Aligned_cols=142  Identities=15%  Similarity=0.190  Sum_probs=96.3

Q ss_pred             hhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 038916           82 ADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDK-DVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAV  160 (300)
Q Consensus        82 ~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~-Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~  160 (300)
                      ..|..|..+...|+|+|..++-|+.-|...+..+|... ++..+...   -.=|.-+..++.++....+++-|+|.+.-.
T Consensus        79 e~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~---~ere~lV~qLEk~~~q~~qLe~d~qs~lDE  155 (319)
T PF09789_consen   79 EQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP---HEREDLVEQLEKLREQIEQLERDLQSLLDE  155 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999998888888853 22233222   122334555788999999999999999999


Q ss_pred             HHHhHhhcccHHHHHHHHHHHHHHHHHHHHh-------hhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 038916          161 RQELTDLQQVPALKAEIENVKQELQRARAAI-------EFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIAN  228 (300)
Q Consensus       161 RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~-------e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n  228 (300)
                      ++||.  ..-.+.+-..+.|-+||...-..-       +-=.--|.=.-|+++..+.+...+.+=|-|-...++.
T Consensus       156 keEl~--~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~  228 (319)
T PF09789_consen  156 KEELV--TERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER  228 (319)
T ss_pred             HHHHH--HHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99993  122233444445555554433221       1000012223467778888888888888888888765

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=93.28  E-value=2.9  Score=43.78  Aligned_cols=26  Identities=23%  Similarity=0.325  Sum_probs=16.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhh
Q 038916          170 VPALKAEIENVKQELQRARAAIEFDK  195 (300)
Q Consensus       170 v~al~aEl~~lRqEl~r~R~a~e~Ek  195 (300)
                      -..|-+.|+.|+-+|..-+..|+..+
T Consensus       319 n~~L~~~I~dL~~ql~e~~r~~e~~L  344 (546)
T KOG0977|consen  319 NSALEKRIEDLEYQLDEDQRSFEQAL  344 (546)
T ss_pred             ChhHHHHHHHHHhhhhhhhhhhhhhh
Confidence            35666667777766666666666654

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=93.24  E-value=8.3  Score=37.09  Aligned_cols=25  Identities=16%  Similarity=0.287  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916          207 VMEKKLISMARELEKLRAEIANSEK  231 (300)
Q Consensus       207 aMeknlisMarEvekLRael~n~ek  231 (300)
                      ..+..+..+..++.++++.+..++.
T Consensus       243 ~~~~~l~~~~~~l~~~~~~l~~~~~  267 (423)
T TIGR01843       243 EVLEELTEAQARLAELRERLNKARD  267 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555566666666666655444

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=93.21  E-value=10  Score=40.86  Aligned_cols=26  Identities=27%  Similarity=0.464  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHH
Q 038916          210 KKLISMARELEKLRAEIANSEKRARA  235 (300)
Q Consensus       210 knlisMarEvekLRael~n~ekR~ra  235 (300)
                      |+|-...+|.+-||..|........+
T Consensus       190 ~~La~~q~e~d~L~~qLsk~~~~le~  215 (739)
T PF07111_consen  190 KELAEAQREADLLREQLSKTQEELEA  215 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            34555556677777777655554433

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=93.08  E-value=2.8  Score=46.44  Aligned_cols=40  Identities=18%  Similarity=0.175  Sum_probs=28.8

Q ss_pred             hhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 038916           79 GLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMD  118 (300)
Q Consensus        79 ~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e  118 (300)
                      +|=-.|.||-++-|-||+=.+..+++.|.+..-....+.|
T Consensus       372 qlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE  411 (1243)
T KOG0971|consen  372 QLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSE  411 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhH
Confidence            4445688888888888888888888888877444444443

>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]

Probab=93.01  E-value=7  Score=40.06  Aligned_cols=65  Identities=14%  Similarity=0.147  Sum_probs=48.4

Q ss_pred             cccHHHHH-HHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 038916          168 QQVPALKA-EIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRARAAA  237 (300)
Q Consensus       168 qQv~al~a-El~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~ra~~  237 (300)
                      +++-.... .++++++   ...+-+..+-+.....++++..+--++-+|++|+-.|-+.|.+  ++.++.|
T Consensus       131 ~~Ll~~~~~~~e~f~e---~l~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~--~ktrG~w  196 (448)
T COG1322         131 KQLLKPLREVLEKFRE---QLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALKG--NKTRGNW  196 (448)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCccccH
Confidence            44444443 4455555   3445577778889999999999999999999999999999999  4444443

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.89  E-value=13  Score=41.00  Aligned_cols=109  Identities=22%  Similarity=0.355  Sum_probs=65.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH-
Q 038916           87 LAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT-  165 (300)
Q Consensus        87 La~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~-  165 (300)
                      |-+....|.++|.....-+|.|..-+-++|+..--+-.++-.-.-..|..+-.+..+.++|.-+..-+++|...+|+|. 
T Consensus       435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~  514 (1118)
T KOG1029|consen  435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNH  514 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            4455556666666666666766666666666533333333333334455555567777778888888888888888887 


Q ss_pred             -----------hhc---ccHHHHHHHHHHHHHHHHHHHHhhhhh
Q 038916          166 -----------DLQ---QVPALKAEIENVKQELQRARAAIEFDK  195 (300)
Q Consensus       166 -----------d~q---Qv~al~aEl~~lRqEl~r~R~a~e~Ek  195 (300)
                                 +.+   ++.+...+-+.+||-|.-+.-.++-|+
T Consensus       515 qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~  558 (1118)
T KOG1029|consen  515 QLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKET  558 (1118)
T ss_pred             HHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       122   245555555566665555555554444

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=92.80  E-value=8.1  Score=38.06  Aligned_cols=39  Identities=26%  Similarity=0.345  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHhH-----hhcccHHHHHHHHHHHHHHHH
Q 038916          148 LKVQADIKELTAVRQELT-----DLQQVPALKAEIENVKQELQR  186 (300)
Q Consensus       148 ~ql~aE~q~L~a~RqEL~-----d~qQv~al~aEl~~lRqEl~r  186 (300)
                      ..++.++..+..-.++|.     +.-.|..++++|+.+++.|..
T Consensus       257 ~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~  300 (444)
T TIGR03017       257 QNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA  300 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            345555555555555553     344566777777777766644

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=92.69  E-value=0.2  Score=54.12  Aligned_cols=15  Identities=40%  Similarity=0.501  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHhH
Q 038916          151 QADIKELTAVRQELT  165 (300)
Q Consensus       151 ~aE~q~L~a~RqEL~  165 (300)
                      .-|+-.+.+++.||-
T Consensus       798 KP~i~avt~ACEE~r  812 (1102)
T KOG1924|consen  798 KPDIVAVTAACEELR  812 (1102)
T ss_pred             ChHHHHHHHHHHHHH
Confidence            345555566666654

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=92.39  E-value=17  Score=41.92  Aligned_cols=20  Identities=20%  Similarity=0.323  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHhHHH
Q 038916          212 LISMARELEKLRAEIANSEK  231 (300)
Q Consensus       212 lisMarEvekLRael~n~ek  231 (300)
                      +..+.++|+.+|.+|+...+
T Consensus       923 ~eel~a~L~e~r~rL~~l~~  942 (1353)
T TIGR02680       923 VDEIRARLAETRAALASGGR  942 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444555555544443

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PHA02562 46 endonuclease subunit; Provisional

Probab=92.28  E-value=14  Score=37.36  Aligned_cols=23  Identities=22%  Similarity=0.437  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhH
Q 038916          143 MRSELLKVQADIKELTAVRQELT  165 (300)
Q Consensus       143 lr~El~ql~aE~q~L~a~RqEL~  165 (300)
                      +.+++..++.++..+.....++.
T Consensus       304 l~d~i~~l~~~l~~l~~~i~~~~  326 (562)
T PHA02562        304 IKDKLKELQHSLEKLDTAIDELE  326 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444443

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=92.07  E-value=3.8  Score=44.34  Aligned_cols=52  Identities=21%  Similarity=0.329  Sum_probs=32.9

Q ss_pred             HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 038916           64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQ  122 (300)
Q Consensus        64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq  122 (300)
                      +-||+.|+-+.+++..+..-|.       .|...|+.+..+++.......---+|.|++
T Consensus        94 dklE~~Lankda~lrq~eekn~-------slqerLelaE~~l~qs~rae~lpeveael~  145 (916)
T KOG0249|consen   94 DKLENELANKDADLRQNEEKNR-------SLQERLELAEPKLQQSLRAETLPEVEAELA  145 (916)
T ss_pred             HHHHHHHhCcchhhchhHHhhh-------hhhHHHHHhhHhhHhHHhhhhhhhhHHHHH
Confidence            7899999999988886666554       455666666666655544333333344444

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=91.96  E-value=17  Score=39.27  Aligned_cols=52  Identities=23%  Similarity=0.275  Sum_probs=38.8

Q ss_pred             HHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 038916           68 EHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDK  119 (300)
Q Consensus        68 e~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~  119 (300)
                      +.|+-|-.||+||=.+-+-|-.+-.-=+-.|.++--||..|......-++|.
T Consensus        66 elis~qlqE~rrle~e~~~lre~sl~qkmrLe~qa~Ele~l~~ae~agraEa  117 (739)
T PF07111_consen   66 ELISRQLQELRRLEEEVRALRETSLQQKMRLEAQAEELEALARAEKAGRAEA  117 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhH
Confidence            4567777999999888876666654445567888889999987777777764

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional

Probab=91.88  E-value=5.2  Score=40.86  Aligned_cols=109  Identities=15%  Similarity=0.161  Sum_probs=67.7

Q ss_pred             hHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH-hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHH
Q 038916          133 LEVDLRGVEAMRSELLKVQADIKELTAVRQELT-DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKK  211 (300)
Q Consensus       133 ~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMekn  211 (300)
                      .++-+.-+-.|..++..+++++..|   +.-++ +.-||+.++.+|..|+++|...|+.+.-.. +. .          .
T Consensus       281 a~~~~~lI~~Le~qLa~~~aeL~~L---~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~-g~-~----------~  345 (434)
T PRK15178        281 ITAIYQLIAGFETQLAEAKAEYAQL---MVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKL-GS-Q----------G  345 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCC-CC-C----------c
Confidence            3333333444445555666644433   22233 668999999999999999999998886432 11 0          2


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhh-------CCCCCCcccCCCCCCCC
Q 038916          212 LISMARELEKLRAEIANSEKRARAAAAV-------GNPGASFNTNYGTPEAG  256 (300)
Q Consensus       212 lisMarEvekLRael~n~ekR~ra~~a~-------~~p~~~y~~~~gnp~~~  256 (300)
                      +-...-|+|.|..+.+.|+|...++.++       ++.-.-|=..+-+|..+
T Consensus       346 la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA~RQ~~YL~~iv~P~lP  397 (434)
T PRK15178        346 SSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQALRERQYLLIISQPMAE  397 (434)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeeeeCCCCC
Confidence            3456778888888888888855444332       12223566667777654

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=91.87  E-value=18  Score=41.18  Aligned_cols=19  Identities=21%  Similarity=0.344  Sum_probs=7.7

Q ss_pred             ccHHHHHHHHHHHHHHHHH
Q 038916          169 QVPALKAEIENVKQELQRA  187 (300)
Q Consensus       169 Qv~al~aEl~~lRqEl~r~  187 (300)
                      ++..++..|..+...+...
T Consensus       522 ~~e~lk~~L~~~~~~~~e~  540 (1293)
T KOG0996|consen  522 KVEELKGKLLASSESLKEK  540 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444333333

>PF14735 HAUS4: HAUS augmin-like complex subunit 4

Probab=91.60  E-value=12  Score=35.22  Aligned_cols=76  Identities=18%  Similarity=0.272  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916          154 IKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANS  229 (300)
Q Consensus       154 ~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~  229 (300)
                      ..||-....+|-.----|.-..=+..+|.+|..++...+.++......++--+++-..+.++++|+-+|+.+|+|-
T Consensus       153 ~lKLr~~~~~iL~~TYTpe~v~Al~~Ir~~L~~~~~~~e~~~~~a~~~L~~Ye~lg~~F~~ivreY~~l~~~ie~k  228 (238)
T PF14735_consen  153 ILKLRVLELEILSDTYTPETVPALRKIRDHLEEAIEELEQELQKARQRLESYEGLGPEFEEIVREYTDLQQEIENK  228 (238)
T ss_pred             HHHHHHHHHHHHHccCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHHHHHH
Confidence            3455555555542222344444455688888888888888888888888888899999999999999999999754

>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]

Probab=91.43  E-value=5.9  Score=33.67  Aligned_cols=49  Identities=24%  Similarity=0.268  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916          180 VKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEK  231 (300)
Q Consensus       180 lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ek  231 (300)
                      ++|||.-+|+.+.-=.   --.---++-.|++|..|.+|.+|-|.+|.+..+
T Consensus        63 vkqel~EAr~nV~kRl---efI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~  111 (120)
T KOG3478|consen   63 VKQELEEARTNVGKRL---EFISKEIKRLENQIRDSQEEFEKQREAVIKLQQ  111 (120)
T ss_pred             hHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555543211   111123556788888889999999999876654

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=91.42  E-value=12  Score=37.57  Aligned_cols=22  Identities=23%  Similarity=0.282  Sum_probs=14.3

Q ss_pred             hhcccHHHHHHHHHHHHHHHHH
Q 038916          166 DLQQVPALKAEIENVKQELQRA  187 (300)
Q Consensus       166 d~qQv~al~aEl~~lRqEl~r~  187 (300)
                      +.-+|-.++++|+.+++.+...
T Consensus       273 ~hP~v~~l~~qi~~l~~~l~~~  294 (498)
T TIGR03007       273 KHPDVIATKREIAQLEEQKEEE  294 (498)
T ss_pred             cChHHHHHHHHHHHHHHHHHhh
Confidence            3445677777777777766553

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=91.36  E-value=13  Score=44.07  Aligned_cols=96  Identities=22%  Similarity=0.263  Sum_probs=72.4

Q ss_pred             HHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHH
Q 038916           67 EEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSE  146 (300)
Q Consensus        67 Ee~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~E  146 (300)
                      .++++.-..|+..|-.+|.-|-.+-..|.+++..-..|.++|.....++++-++..-+.......++|..   ++.|-.+
T Consensus       737 ~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~---i~eL~~e  813 (1822)
T KOG4674|consen  737 NEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESR---IKELERE  813 (1822)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence            3456677788889999999999999999999999999999999888999888777777777777777743   3455556


Q ss_pred             HHHHHHHHHHHHHHHHHhH
Q 038916          147 LLKVQADIKELTAVRQELT  165 (300)
Q Consensus       147 l~ql~aE~q~L~a~RqEL~  165 (300)
                      |..+..++++-..-.-+|+
T Consensus       814 l~~lk~klq~~~~~~r~l~  832 (1822)
T KOG4674|consen  814 LQKLKKKLQEKSSDLRELT  832 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6666665555544444444

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=91.35  E-value=8.6  Score=34.04  Aligned_cols=34  Identities=21%  Similarity=0.437  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHhHHhhhhhHH-HHHHHHHHHHHHHH
Q 038916          123 MREMYDKSVQLEVDLRGVEA-MRSELLKVQADIKE  156 (300)
Q Consensus       123 ~r~l~~k~~K~EaElra~e~-lr~El~ql~aE~q~  156 (300)
                      +-.+.....++..|+..++. |++|+.++++|++-
T Consensus        75 ~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~kl  109 (177)
T PF07798_consen   75 FAELRSENEKLQREIEKLRQELREEINKLRAEVKL  109 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555677777777755 77778888877763

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=91.33  E-value=12  Score=34.50  Aligned_cols=32  Identities=22%  Similarity=0.216  Sum_probs=22.1

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 038916          199 AENYEHGQVMEKKLISMARELEKLRAEIANSE  230 (300)
Q Consensus       199 ~e~~eQ~qaMeknlisMarEvekLRael~n~e  230 (300)
                      .+.-.|+..+.+-++..+.=++-||++|..-+
T Consensus       154 ~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LE  185 (193)
T PF14662_consen  154 SERTQQIEELKKTIEEYRSITEELRLEKSRLE  185 (193)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445666777777777777788888876544

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=91.28  E-value=11  Score=34.25  Aligned_cols=152  Identities=19%  Similarity=0.364  Sum_probs=80.5

Q ss_pred             HHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHH-----HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhh
Q 038916           65 IIEEHLAAQHQDIQGLLADNQRLAATHVALKQELE-----VAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRG  139 (300)
Q Consensus        65 ~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLa-----a~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra  139 (300)
                      -|...+..-+.+|+.|..||+-|=.--  .||+-+     ...-||-.|       -.-|.-.+|.+-++..+.....++
T Consensus        16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq--~Rq~kAL~k~e~~e~~Lpql-------l~~h~eEvr~Lr~~LR~~q~~~r~   86 (194)
T PF15619_consen   16 ELQNELAELQRKLQELRKENKTLKQLQ--KRQEKALQKYEDTEAELPQL-------LQRHNEEVRVLRERLRKSQEQERE   86 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            477888888889999999998764322  222222     222233222       233444455555555554444443


Q ss_pred             hHH----HHHHHHHHHHHHHHHHHH--------HHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhh----
Q 038916          140 VEA----MRSELLKVQADIKELTAV--------RQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYE----  203 (300)
Q Consensus       140 ~e~----lr~El~ql~aE~q~L~a~--------RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~e----  203 (300)
                      ++.    .-+++.++..+++.|.-+        |.+|  .+++..+.++++..-..++.....++...+.+.-.+.    
T Consensus        87 ~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL--~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~k  164 (194)
T PF15619_consen   87 LERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREEL--QRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKK  164 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            321    222455555555544332        3444  2345556666665555555555555555444433332    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH
Q 038916          204 HGQVMEKKLISMARELEKLRAEIA  227 (300)
Q Consensus       204 Q~qaMeknlisMarEvekLRael~  227 (300)
                      -...+..++.++..||++|..-|.
T Consensus       165 K~~~~~~~~~~l~~ei~~L~~klk  188 (194)
T PF15619_consen  165 KHKEAQEEVKSLQEEIQRLNQKLK  188 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            234556667777777777777664

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=91.25  E-value=18  Score=41.41  Aligned_cols=15  Identities=47%  Similarity=0.508  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHH
Q 038916          211 KLISMARELEKLRAE  225 (300)
Q Consensus       211 nlisMarEvekLRae  225 (300)
                      .+...-.|+|++++|
T Consensus       675 ~lk~~q~~~eq~~~E  689 (1317)
T KOG0612|consen  675 KLKMLQNELEQENAE  689 (1317)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333444444444444

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=91.20  E-value=2.9  Score=35.51  Aligned_cols=42  Identities=17%  Similarity=0.199  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHH
Q 038916          175 AEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMA  216 (300)
Q Consensus       175 aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMa  216 (300)
                      +++..+++|+.....-++.=+.-+-+..|++..++.++.-|+
T Consensus        68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK  109 (120)
T PF12325_consen   68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLK  109 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            333333333333333333333334444555555555555444

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PRK11546 zraP zinc resistance protein; Provisional

Probab=90.94  E-value=3.9  Score=35.91  Aligned_cols=58  Identities=14%  Similarity=0.168  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916          172 ALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANS  229 (300)
Q Consensus       172 al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~  229 (300)
                      .-.++...||++|...|..+.........|-+-+.++.++|..+...+..+|..+..+
T Consensus        58 ~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~  115 (143)
T PRK11546         58 DFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIA  115 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3356677888888888888888888888888888888888888887777777766543

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=90.89  E-value=20  Score=36.94  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 038916          207 VMEKKLISMARELEKLRAEIAN  228 (300)
Q Consensus       207 aMeknlisMarEvekLRael~n  228 (300)
                      .+.-.+..--.|++|||.++.+
T Consensus       359 ~~~~k~~~ke~E~q~lr~~l~~  380 (511)
T PF09787_consen  359 PLQLKLKEKESEIQKLRNQLSA  380 (511)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444456788888888764

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=90.83  E-value=18  Score=37.54  Aligned_cols=55  Identities=11%  Similarity=0.177  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 038916          171 PALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIAN  228 (300)
Q Consensus       171 ~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n  228 (300)
                      .-++..|+..++.+.   ..+..+.+.+...-+|++.|..--..|.+|..+|-.+|-.
T Consensus       143 ~Pl~e~l~~f~~~v~---~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkg  197 (475)
T PRK10361        143 SPLREQLDGFRRQVQ---DSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKG  197 (475)
T ss_pred             hhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            445555555555322   3444577788888889998888889999999999888843

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=90.57  E-value=1.9  Score=32.61  Aligned_cols=55  Identities=31%  Similarity=0.434  Sum_probs=35.2

Q ss_pred             HhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHH
Q 038916          132 QLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRAR  188 (300)
Q Consensus       132 K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R  188 (300)
                      -||+|||+=..+.+||.++++....+..--+|-  -++...|.++|+.|+.|+--.|
T Consensus         5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqea--E~rn~eL~~ei~~L~~e~ee~r   59 (61)
T PF08826_consen    5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEA--EKRNRELEQEIERLKKEMEELR   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence            367888877888888888887666655544443  1345566666666666654443

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=90.54  E-value=21  Score=38.08  Aligned_cols=26  Identities=19%  Similarity=0.106  Sum_probs=18.1

Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHh
Q 038916           85 QRLAATHVALKQELEVAQYELQRMVH  110 (300)
Q Consensus        85 qRLa~~h~aLrqeLaa~~~Elq~L~~  110 (300)
                      +-|...-..|+++|..+..+|+....
T Consensus       197 ~~L~~ql~~l~~~l~~aE~~l~~fk~  222 (754)
T TIGR01005       197 DFLAPEIADLSKQSRDAEAEVAAYRA  222 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566788888888888777653

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=90.53  E-value=1.5  Score=40.40  Aligned_cols=31  Identities=13%  Similarity=0.349  Sum_probs=19.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 038916          202 YEHGQVMEKKLISMARELEKLRAEIANSEKR  232 (300)
Q Consensus       202 ~eQ~qaMeknlisMarEvekLRael~n~ekR  232 (300)
                      -++-+.+.+++.....|++.|+++++..++.
T Consensus       138 ~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~  168 (206)
T PRK10884        138 KEENQKLKNQLIVAQKKVDAANLQLDDKQRT  168 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455666666777777777776655553

>PF13514 AAA_27: AAA domain

Probab=90.26  E-value=26  Score=39.26  Aligned_cols=23  Identities=9%  Similarity=0.164  Sum_probs=10.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHH
Q 038916           87 LAATHVALKQELEVAQYELQRMV  109 (300)
Q Consensus        87 La~~h~aLrqeLaa~~~Elq~L~  109 (300)
                      +......+++++..-.+++..|.
T Consensus       748 ~~~ri~~~~~~~~~f~~~~~~L~  770 (1111)
T PF13514_consen  748 LRRRIEQMEADLAAFEEQVAALA  770 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444443

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=90.11  E-value=7.3  Score=36.84  Aligned_cols=50  Identities=26%  Similarity=0.333  Sum_probs=35.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH--hHHHHH
Q 038916          170 VPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIA--NSEKRA  233 (300)
Q Consensus       170 v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~--n~ekR~  233 (300)
                      +|.+.+..|-.|+              ++.+.=+++.....++..+.+||++||++=.  |+|.|=
T Consensus        81 LpIVtsQRDRFR~--------------Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRy  132 (248)
T PF08172_consen   81 LPIVTSQRDRFRQ--------------RNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRY  132 (248)
T ss_pred             HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555              5666667778888899999999999999843  566563

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia

Probab=90.03  E-value=13  Score=33.00  Aligned_cols=105  Identities=19%  Similarity=0.276  Sum_probs=52.5

Q ss_pred             HHHHHHHHHhHHhhhhhHHHHHHHHHHHH--------HHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhh
Q 038916          124 REMYDKSVQLEVDLRGVEAMRSELLKVQA--------DIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDK  195 (300)
Q Consensus       124 r~l~~k~~K~EaElra~e~lr~El~ql~a--------E~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ek  195 (300)
                      .++.+...+.|+....+.....-|..|-+        ++..+...+..|.  -++..+.+++..+++.+..+...+..=.
T Consensus        36 a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~--~~~~~~e~~~a~l~~~l~~~~~~ia~~~  113 (158)
T PF09486_consen   36 AELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLE--ERVRAAEAELAALRQALRAAEDEIAATR  113 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444443333        3333444444442  2344555555555555555555444444


Q ss_pred             hchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 038916          196 KGYAENYEHGQVMEKKLISMARELEKLRAEIANSE  230 (300)
Q Consensus       196 k~~~e~~eQ~qaMeknlisMarEvekLRael~n~e  230 (300)
                      .+-.-|--|+....+.+..|.+-+|..+.+...+|
T Consensus       114 raIarn~a~id~~~er~~~l~r~~ea~~eda~DEE  148 (158)
T PF09486_consen  114 RAIARNDARIDVCRERIDRLRRAAEAAAEDAQDEE  148 (158)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhHHHhcchH
Confidence            34444555666667777777777776666655443

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=89.88  E-value=25  Score=35.91  Aligned_cols=28  Identities=29%  Similarity=0.331  Sum_probs=21.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 038916          203 EHGQVMEKKLISMARELEKLRAEIANSE  230 (300)
Q Consensus       203 eQ~qaMeknlisMarEvekLRael~n~e  230 (300)
                      .++.+-++.+..++..-..|+.+|+.++
T Consensus       217 ~~l~~~q~~l~eL~~~~~~L~~~Ias~e  244 (420)
T COG4942         217 SELSADQKKLEELRANESRLKNEIASAE  244 (420)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3455666777788888888888888888

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=89.82  E-value=24  Score=40.44  Aligned_cols=102  Identities=21%  Similarity=0.267  Sum_probs=58.8

Q ss_pred             HHHHHHHHHhHHHHHhhhhhccchh---hhHHHHHHHHHH---HHHHHHH-HHhhhhhhhhhhHHHHHHHHHHHHHhHHh
Q 038916           64 AIIEEHLAAQHQDIQGLLADNQRLA---ATHVALKQELEV---AQYELQR-MVHYADSFRMDKDVQMREMYDKSVQLEVD  136 (300)
Q Consensus        64 ~~lEe~la~Q~~Ei~~L~~dNqRLa---~~h~aLrqeLaa---~~~Elq~-L~~~i~~~r~e~Elq~r~l~~k~~K~EaE  136 (300)
                      .+||+.+.--..++..|...++.++   ..+.-|++.+.-   ...|+++ -.+....-..+.+-++.+..++..+++++
T Consensus       437 ~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~  516 (1317)
T KOG0612|consen  437 QILEQSLVNEMQEKEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEAL  516 (1317)
T ss_pred             hhcccchhhHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            6777777777678888888888877   455556644333   3344443 00011111123444466666666677776


Q ss_pred             hhhhH----HHHHHHHHHHHHHHHHHHHHHHhH
Q 038916          137 LRGVE----AMRSELLKVQADIKELTAVRQELT  165 (300)
Q Consensus       137 lra~e----~lr~El~ql~aE~q~L~a~RqEL~  165 (300)
                      ++..+    .+.++..++.-..+++.+.|++|.
T Consensus       517 ~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le  549 (1317)
T KOG0612|consen  517 VRQLEEELEDAQKKNDNAADSLEKVNSLRKQLE  549 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            66442    234455666666777777777776

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=89.45  E-value=28  Score=39.11  Aligned_cols=93  Identities=20%  Similarity=0.317  Sum_probs=51.5

Q ss_pred             HHHhHHHHHhhhhhccchhhh-------HHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH-------HhHH
Q 038916           70 LAAQHQDIQGLLADNQRLAAT-------HVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSV-------QLEV  135 (300)
Q Consensus        70 la~Q~~Ei~~L~~dNqRLa~~-------h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~-------K~Ea  135 (300)
                      |-.+|.|+..|-.|-+.|-.+       ..-|+++......++.++.   ...+.-..+++.+..-+.+       +..+
T Consensus       176 ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~r---er~~~~~~Ie~l~~k~~~v~y~~~~~ey~~  252 (1072)
T KOG0979|consen  176 LLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVR---ERERKKSKIELLEKKKKWVEYKKHDREYNA  252 (1072)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccccchHhhhHHHHH
Confidence            455677777777777776543       4556666666666665554   3333334555544433333       3444


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916          136 DLRGVEAMRSELLKVQADIKELTAVRQELT  165 (300)
Q Consensus       136 Elra~e~lr~El~ql~aE~q~L~a~RqEL~  165 (300)
                      ...+.+-+|.++-.+.-+++.+...+.||.
T Consensus       253 ~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe  282 (1072)
T KOG0979|consen  253 YKQAKDRAKKELRKLEKEIKPIEDKKEELE  282 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Confidence            444455555555555555555555555554

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=89.45  E-value=21  Score=34.35  Aligned_cols=60  Identities=18%  Similarity=0.264  Sum_probs=35.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhch-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916          170 VPALKAEIENVKQELQRARAAIEFDKKGY-AENYEHGQVMEKKLISMARELEKLRAEIANS  229 (300)
Q Consensus       170 v~al~aEl~~lRqEl~r~R~a~e~Ekk~~-~e~~eQ~qaMeknlisMarEvekLRael~n~  229 (300)
                      +....++|..++.++...+..+...+... .+..+++..++.++..+..+++.++..+.+.
T Consensus       212 l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~  272 (423)
T TIGR01843       212 LGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRL  272 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            34444455555555555444444333222 2233456778888888888888888887643

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK11546 zraP zinc resistance protein; Provisional

Probab=89.40  E-value=0.71  Score=40.45  Aligned_cols=53  Identities=23%  Similarity=0.376  Sum_probs=34.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhh
Q 038916          140 VEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFD  194 (300)
Q Consensus       140 ~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~E  194 (300)
                      +.+||+++.--++|++.|.  -..=.|-+.|.++..||..||+.|.-.|..+.-+
T Consensus        63 t~~LRqqL~aKr~ELnALl--~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~  115 (143)
T PRK11546         63 TSALRQQLVSKRYEYNALL--TANPPDSSKINAVAKEMENLRQSLDELRVKRDIA  115 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566555555555441  1122277889999999999999888877655443

>PF04626 DEC-1_C: Dec-1 protein, C terminal region; InterPro: IPR006720 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly

Probab=89.36  E-value=0.24  Score=42.28  Aligned_cols=28  Identities=46%  Similarity=0.748  Sum_probs=22.3

Q ss_pred             CCcccCCCCCCCCCCCCCCCCCCCCCcccc
Q 038916          244 ASFNTNYGTPEAGYPSNPYPVSYSMNPVQA  273 (300)
Q Consensus       244 ~~y~~~~gnp~~~y~~~~y~d~Y~~~~~~~  273 (300)
                      ..||.+||  +.||++|+|+++|+.|.|+.
T Consensus        75 ~sYgtsYg--~ggyGsnaYG~~~~~n~yqs  102 (132)
T PF04626_consen   75 QSYGTSYG--GGGYGSNAYGVQRSVNSYQS  102 (132)
T ss_pred             cccceeec--CCcccccccCCCcCcccccc
Confidence            37888887  45899999999999887763

Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Alternative splicing generates different carboxy terminal ends in different protein isoforms. This domain is the most C-terminal region that is present in the main isoforms.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=89.28  E-value=29  Score=35.78  Aligned_cols=56  Identities=25%  Similarity=0.274  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHH-HHHHHHHHHHHH
Q 038916          171 PALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLIS-MARELEKLRAEI  226 (300)
Q Consensus       171 ~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlis-MarEvekLRael  226 (300)
                      .+++.-|+.|+-|+-|.|..+.--.|-+.+.+.|..+=|+.+.+ ..|+-.||--++
T Consensus       249 ~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~  305 (552)
T KOG2129|consen  249 AAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINEL  305 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            45566677777777777777777777777777777776665432 233333443333

>PF12592 DUF3763: Protein of unknown function (DUF3763); InterPro: IPR022547 This domain is found in bacterial regulartory ATPases 3

Probab=89.19  E-value=2.3  Score=31.77  Aligned_cols=56  Identities=21%  Similarity=0.290  Sum_probs=45.3

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 038916          169 QVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRA  224 (300)
Q Consensus       169 Qv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRa  224 (300)
                      |.....++|+.+.++|...|+.|..-..=+.-+-+=...||..|..+...|+.+|.
T Consensus         1 ~~~e~~~qL~~~~~~l~~qR~~F~~~qPhlFI~~~wl~~IE~Sl~~l~eqL~q~~~   56 (57)
T PF12592_consen    1 QPEEALAQLDEAEHELRQQRSLFHQHQPHLFIDSEWLAAIEASLQQLAEQLEQLKQ   56 (57)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHTT---TTS-HHHHHHHHHHHHHHHHHHHHH--
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcCCCcCcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34567899999999999999999999999999999999999999999999998874

6.3. from EC, and is approximately 60 amino acids in length. The domain is found C-terminal to PF07728 from PFAM. There is a single completely conserved residue F that may be functionally important. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; PDB: 3NBX_X.

>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised

Probab=88.89  E-value=0.12  Score=53.12  Aligned_cols=81  Identities=26%  Similarity=0.412  Sum_probs=0.0

Q ss_pred             HHHHhhhhhccchhhhHHHH---HHHHHHHHHHHHHHHhh-----------hhhhhhhhHHHHHHHHHHHHHhHHhhhhh
Q 038916           75 QDIQGLLADNQRLAATHVAL---KQELEVAQYELQRMVHY-----------ADSFRMDKDVQMREMYDKSVQLEVDLRGV  140 (300)
Q Consensus        75 ~Ei~~L~~dNqRLa~~h~aL---rqeLaa~~~Elq~L~~~-----------i~~~r~e~Elq~r~l~~k~~K~EaElra~  140 (300)
                      +||..|=   .||-..+-.|   +.+|..+.+..+.|+..           +..++.|+|.+|++++.+.+-+|.|||  
T Consensus       376 qEI~~Lk---ErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELr--  450 (495)
T PF12004_consen  376 QEIQSLK---ERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELR--  450 (495)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhh--
Confidence            4776554   4555555444   45777777777777432           347778999999999999999999998  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 038916          141 EAMRSELLKVQADIKELTAVRQELTDLQ  168 (300)
Q Consensus       141 e~lr~El~ql~aE~q~L~a~RqEL~d~q  168 (300)
                              +=++|.+.+...||-|-|.|
T Consensus       451 --------re~~~m~~~~~~kqrii~aQ  470 (495)
T PF12004_consen  451 --------REHAEMQAVLDHKQRIIDAQ  470 (495)
T ss_dssp             ----------------------------
T ss_pred             --------hhHHHHhcccccchHHHHHh
Confidence                    55667778888888886554

This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=88.89  E-value=13  Score=39.74  Aligned_cols=72  Identities=21%  Similarity=0.297  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHhH-----hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHH
Q 038916          147 LLKVQADIKELTAVRQELT-----DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEK  221 (300)
Q Consensus       147 l~ql~aE~q~L~a~RqEL~-----d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvek  221 (300)
                      +..+++.+..+.....+|.     +.-.|..+++.+..+++++..           ....+.+.+..++++..+.||++-
T Consensus       313 ~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~-----------l~~~~~~~p~~e~~~~~L~R~~~~  381 (726)
T PRK09841        313 IVNVDNQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKR-----------LNKRVSAMPSTQQEVLRLSRDVEA  381 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHH-----------HHHHHHhccHHHHHHHHHHHHHHH
Confidence            3334444444444444443     233455555555555554443           345667888999999999999999


Q ss_pred             HHHHHHhH
Q 038916          222 LRAEIANS  229 (300)
Q Consensus       222 LRael~n~  229 (300)
                      .|.-+...
T Consensus       382 ~~~lY~~l  389 (726)
T PRK09841        382 GRAVYLQL  389 (726)
T ss_pred             HHHHHHHH
Confidence            99988754

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=88.78  E-value=14  Score=31.43  Aligned_cols=22  Identities=32%  Similarity=0.289  Sum_probs=10.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHH
Q 038916           88 AATHVALKQELEVAQYELQRMV  109 (300)
Q Consensus        88 a~~h~aLrqeLaa~~~Elq~L~  109 (300)
                      .++.-.++-|+...+++|.+|.
T Consensus        22 ~s~lr~~E~E~~~l~~el~~l~   43 (120)
T PF12325_consen   22 QSQLRRLEGELASLQEELARLE   43 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444555555555554444

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=88.77  E-value=44  Score=37.24  Aligned_cols=48  Identities=10%  Similarity=0.106  Sum_probs=25.8

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHH
Q 038916          168 QQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISM  215 (300)
Q Consensus       168 qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisM  215 (300)
                      ..+..+++|+..+.-|+..+--.+..-...++..++|+-..+++=+..
T Consensus       494 ~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~  541 (980)
T KOG0980|consen  494 KALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRL  541 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence            345566666666665555555444444444555555555555554443

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=88.73  E-value=28  Score=39.37  Aligned_cols=25  Identities=32%  Similarity=0.408  Sum_probs=14.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916          203 EHGQVMEKKLISMARELEKLRAEIA  227 (300)
Q Consensus       203 eQ~qaMeknlisMarEvekLRael~  227 (300)
                      .+..-++.++..+.+||+|+...+.
T Consensus       394 ~~~~e~e~k~~~L~~evek~e~~~~  418 (1074)
T KOG0250|consen  394 SELEERENKLEQLKKEVEKLEEQIN  418 (1074)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666666666666443

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=88.64  E-value=18  Score=39.37  Aligned_cols=91  Identities=12%  Similarity=0.172  Sum_probs=47.6

Q ss_pred             HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhh--H
Q 038916           64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGV--E  141 (300)
Q Consensus        64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~--e  141 (300)
                      .+|-|+|+--..||..=+    .=|.-...|++.|...+.|+..-+       +...+-...|.+|+.|+..|+..-  +
T Consensus       458 ~~L~e~IeKLk~E~d~e~----S~A~~~~gLk~kL~~Lr~E~sKa~-------~~~~~~~~~L~eK~~kLk~Efnkkl~e  526 (762)
T PLN03229        458 LALNEMIEKLKKEIDLEY----TEAVIAMGLQERLENLREEFSKAN-------SQDQLMHPVLMEKIEKLKDEFNKRLSR  526 (762)
T ss_pred             hHHHHHHHHHHHHHHHHH----HHhhhhhhHHHHHHHHHHHHHhcc-------cccccccHHHHHHHHHHHHHHHHhhhc
Confidence            356666665555554211    124445667777777766664321       222222334566666666655321  2


Q ss_pred             -----HHHHHHHHHHHHHH---------HHHHHHHHhH
Q 038916          142 -----AMRSELLKVQADIK---------ELTAVRQELT  165 (300)
Q Consensus       142 -----~lr~El~ql~aE~q---------~L~a~RqEL~  165 (300)
                           .|+.++.-|+++.+         +...+.+||-
T Consensus       527 a~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~  564 (762)
T PLN03229        527 APNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEIN  564 (762)
T ss_pred             ccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHH
Confidence                 46666666666665         3445566663

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=88.44  E-value=25  Score=34.01  Aligned_cols=84  Identities=17%  Similarity=0.283  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhHh-hcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHH
Q 038916          140 VEAMRSELLKVQADIKELTAVRQELTD-LQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARE  218 (300)
Q Consensus       140 ~e~lr~El~ql~aE~q~L~a~RqEL~d-~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarE  218 (300)
                      +..++.++..+++++.   .+++-..+ .-+|..++++++.+++.|...+..+.-...      ........++..+.+|
T Consensus       216 i~~L~~~l~~~~~~l~---~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~------~~l~~~~~~~~~L~re  286 (362)
T TIGR01010       216 ISTLEGELIRVQAQLA---QLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLG------DSLNEQTADYQRLVLQ  286 (362)
T ss_pred             HHHHHHHHHHHHHHHH---HHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCC------ccHHHHHHHHHHHHHH
Confidence            4555555556665433   23333334 678999999999999988887766654321      1344455567777777


Q ss_pred             HHHHHHHHHhHHHH
Q 038916          219 LEKLRAEIANSEKR  232 (300)
Q Consensus       219 vekLRael~n~ekR  232 (300)
                      ++=.+.-+..+-+|
T Consensus       287 ~~~a~~~y~~~l~r  300 (362)
T TIGR01010       287 NELAQQQLKAALTS  300 (362)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777666655443

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=88.40  E-value=38  Score=36.08  Aligned_cols=33  Identities=9%  Similarity=0.009  Sum_probs=21.6

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916          199 AENYEHGQVMEKKLISMARELEKLRAEIANSEK  231 (300)
Q Consensus       199 ~e~~eQ~qaMeknlisMarEvekLRael~n~ek  231 (300)
                      ...+.+.+.-+.++..+.||++-.|.-+...-.
T Consensus       365 ~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~  397 (754)
T TIGR01005       365 KAASAQAGEQQVDLDALQRDAAAKRQLYESYLT  397 (754)
T ss_pred             HHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455556677777888888877777764433

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=88.33  E-value=11  Score=34.43  Aligned_cols=56  Identities=20%  Similarity=0.293  Sum_probs=37.1

Q ss_pred             hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHH
Q 038916          166 DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEK  221 (300)
Q Consensus       166 d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvek  221 (300)
                      |.+.+..+++-+..+.++|....-..+.=..++....+....+...+.++-+||+.
T Consensus        84 dK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQ  139 (201)
T PF13851_consen   84 DKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQ  139 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666666666666665555555555566666677788888888888865

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=88.30  E-value=24  Score=37.39  Aligned_cols=103  Identities=22%  Similarity=0.333  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcc------------cHHHHHHHHHHHHHHHHHHHH
Q 038916          123 MREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQ------------VPALKAEIENVKQELQRARAA  190 (300)
Q Consensus       123 ~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQ------------v~al~aEl~~lRqEl~r~R~a  190 (300)
                      -+++.+++.-.|++=...+.++++-..|+.|+++..+.-..+.+..|            +..-..|++.++++...++..
T Consensus       244 n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~  323 (581)
T KOG0995|consen  244 NRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQ  323 (581)
T ss_pred             HHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666666666666677888888888888888887777763322            344445556677777777777


Q ss_pred             hhhhhhchhhhhhhh----HHHHHHHHHHHHHHHHHHHHH
Q 038916          191 IEFDKKGYAENYEHG----QVMEKKLISMARELEKLRAEI  226 (300)
Q Consensus       191 ~e~Ekk~~~e~~eQ~----qaMeknlisMarEvekLRael  226 (300)
                      ++.- .-+.++++++    ..+..++.-|..|+++|+.++
T Consensus       324 Ie~Q-~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~v  362 (581)
T KOG0995|consen  324 IELQ-GISGEDVERMNLERNKLKRELNKIQSELDRLSKEV  362 (581)
T ss_pred             HHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7654 3555666554    234455555555555555444

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=88.23  E-value=25  Score=38.10  Aligned_cols=30  Identities=27%  Similarity=0.387  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 038916          206 QVMEKKLISMARELEKLRAEIANSEKRARA  235 (300)
Q Consensus       206 qaMeknlisMarEvekLRael~n~ekR~ra  235 (300)
                      +.|.++|+.|..+++.|++.|+..++|..-
T Consensus       635 r~~~~EL~~~~~~l~~l~~si~~lk~k~~~  664 (717)
T PF10168_consen  635 REFKKELERMKDQLQDLKASIEQLKKKLDY  664 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            688899999999999999999888876643

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.17  E-value=22  Score=39.18  Aligned_cols=79  Identities=16%  Similarity=0.246  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhH------------------h-hcccHHHHHHHHHHHHHHHH---HHHHhhhhhhchhhh
Q 038916          144 RSELLKVQADIKELTAVRQELT------------------D-LQQVPALKAEIENVKQELQR---ARAAIEFDKKGYAEN  201 (300)
Q Consensus       144 r~El~ql~aE~q~L~a~RqEL~------------------d-~qQv~al~aEl~~lRqEl~r---~R~a~e~Ekk~~~e~  201 (300)
                      ++...|++-|+..|.--.|+|+                  . .+|..-.+.||+.+.++|+-   .-..+..||+.-.+.
T Consensus       436 nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~q  515 (1118)
T KOG1029|consen  436 NAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQ  515 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            3344555555555555555555                  1 24566677777777765544   444556688777777


Q ss_pred             hhhhHHHHHHHHHHHHHHHHH
Q 038916          202 YEHGQVMEKKLISMARELEKL  222 (300)
Q Consensus       202 ~eQ~qaMeknlisMarEvekL  222 (300)
                      +.|+|.--+.-.+-..+++++
T Consensus       516 lkq~q~a~~~~~~~~s~L~aa  536 (1118)
T KOG1029|consen  516 LKQKQSAHKETTQRKSELEAA  536 (1118)
T ss_pred             HHHhhhhccCcchHHHHHHHH
Confidence            777776544333333333333

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=88.11  E-value=3.2  Score=31.44  Aligned_cols=45  Identities=22%  Similarity=0.530  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHH-hhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 038916          179 NVKQELQRARAA-IEFDKKGYAENYEHGQVMEKKLISMARELEKLRA  224 (300)
Q Consensus       179 ~lRqEl~r~R~a-~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRa  224 (300)
                      .+..||...+++ +..+. +--+--.+.+.++.+|..+..|++.+|+
T Consensus        15 ~~~eEL~kvk~~n~~~e~-kLqeaE~rn~eL~~ei~~L~~e~ee~r~   60 (61)
T PF08826_consen   15 AIQEELTKVKSANLAFES-KLQEAEKRNRELEQEIERLKKEMEELRS   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            445555554433 22222 2223334555666666666666666664

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=88.10  E-value=40  Score=37.54  Aligned_cols=90  Identities=26%  Similarity=0.336  Sum_probs=52.2

Q ss_pred             HHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHH------------------HHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 038916           69 HLAAQHQDIQGLLADNQRLAATHVALKQELEVAQY------------------ELQRMVHYADSFRMDKDVQMREMYDKS  130 (300)
Q Consensus        69 ~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~------------------Elq~L~~~i~~~r~e~Elq~r~l~~k~  130 (300)
                      ++-.|..+||--+.+-+|=+.....+++||.-.+.                  |+|+|+    ...++.+-||.++..++
T Consensus       327 kltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~----~l~aerqeQidelKn~i  402 (1265)
T KOG0976|consen  327 KLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLL----ELQAERQEQIDELKNHI  402 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh
Confidence            45666677776666766666555555555544333                  333332    33345666677777777


Q ss_pred             HHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916          131 VQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT  165 (300)
Q Consensus       131 ~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~  165 (300)
                      ..+|-=-+.-+++|.||+...-   +|..+..+|+
T Consensus       403 f~~e~~~~dhe~~kneL~~a~e---kld~mgthl~  434 (1265)
T KOG0976|consen  403 FRLEQGKKDHEAAKNELQEALE---KLDLMGTHLS  434 (1265)
T ss_pred             hhhhhccchhHHHHHHHHHHHH---HHHHHhHHHH
Confidence            7777655555677777766655   4444445554

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=88.01  E-value=39  Score=35.79  Aligned_cols=111  Identities=22%  Similarity=0.367  Sum_probs=64.7

Q ss_pred             HHHHHHHhHHHHHhhhhhccchhhhH----------HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 038916           66 IEEHLAAQHQDIQGLLADNQRLAATH----------VALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEV  135 (300)
Q Consensus        66 lEe~la~Q~~Ei~~L~~dNqRLa~~h----------~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~Ea  135 (300)
                      |++....+--||..|=..|+.|-.-.          ..||...+..+.|++...+           .+..+..+..+|+ 
T Consensus       226 l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~-----------y~~~~~~k~~~~~-  293 (581)
T KOG0995|consen  226 LEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQA-----------YVSQMKSKKQHME-  293 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHH-----------HHHHHHhhhHHHH-
Confidence            33444445556666666666654332          3444455555555544432           2445556666666 


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHhH---hhcc-----cHHHHHHHHHHHHHHHHHHHH
Q 038916          136 DLRGVEAMRSELLKVQADIKELTAVRQELT---DLQQ-----VPALKAEIENVKQELQRARAA  190 (300)
Q Consensus       136 Elra~e~lr~El~ql~aE~q~L~a~RqEL~---d~qQ-----v~al~aEl~~lRqEl~r~R~a  190 (300)
                        ..++-|+.|+...+.|++.|.....+|-   ++|.     |.-+..|...+.++|-..-..
T Consensus       294 --~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~  354 (581)
T KOG0995|consen  294 --KKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSE  354 (581)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              4566888899999999998888888886   3333     444555555555554443333

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=88.01  E-value=8.4  Score=41.73  Aligned_cols=37  Identities=35%  Similarity=0.564  Sum_probs=19.6

Q ss_pred             HHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916          126 MYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT  165 (300)
Q Consensus       126 l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~  165 (300)
                      +..++..+|.|++   .+|.++..+.+|...|..+-+||.
T Consensus        32 ~~~~i~~l~~elk---~~~~~~~~~~~e~~rl~~~~~~~~   68 (717)
T PF09730_consen   32 LQQRILELENELK---QLRQELSNVQAENERLSQLNQELR   68 (717)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555   345555555555555555555553

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.80  E-value=37  Score=35.23  Aligned_cols=28  Identities=18%  Similarity=0.176  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 038916          207 VMEKKLISMARELEKLRAEIANSEKRAR  234 (300)
Q Consensus       207 aMeknlisMarEvekLRael~n~ekR~r  234 (300)
                      .--++|+-+...++++|-+.+--.++-|
T Consensus       492 ~~l~slEkl~~Dyqairqen~~L~~~iR  519 (521)
T KOG1937|consen  492 QYLKSLEKLHQDYQAIRQENDQLFSEIR  519 (521)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3345555566666666666555444443

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=87.76  E-value=0.16  Score=53.84  Aligned_cols=123  Identities=17%  Similarity=0.320  Sum_probs=0.0

Q ss_pred             HHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhh----------------------hhhHHHH
Q 038916           66 IEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFR----------------------MDKDVQM  123 (300)
Q Consensus        66 lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r----------------------~e~Elq~  123 (300)
                      |+.++.....++.+|.-+|.+|-....+|..+......|...|...+..++                      +..|+..
T Consensus       375 Le~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~~~~~~~~~l~~~~~~~~~~~~~l~~El~~  454 (713)
T PF05622_consen  375 LEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNEELECSQAQQEQLSQSGEESSSSGDNLSAELNP  454 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccchhhhccc
Confidence            445555555556666666666666655554444333333333322111111                      1245555


Q ss_pred             HHHHHHHHHhHHhhhhhHHH-----HHHHHHHHHHHHHHHHHHHHhH-----hhcccHHHHHHHHHHHHHHHHHH
Q 038916          124 REMYDKSVQLEVDLRGVEAM-----RSELLKVQADIKELTAVRQELT-----DLQQVPALKAEIENVKQELQRAR  188 (300)
Q Consensus       124 r~l~~k~~K~EaElra~e~l-----r~El~ql~aE~q~L~a~RqEL~-----d~qQv~al~aEl~~lRqEl~r~R  188 (300)
                      .++..++.+||.|.+.+..-     .+.+..+...+......+.+|.     ..+++..+.++|+.+++.++...
T Consensus       455 ~~l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~~  529 (713)
T PF05622_consen  455 AELRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKSLQEQG  529 (713)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55666777777776654211     1122334444444444444443     22445555555555555554433

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=87.73  E-value=23  Score=32.68  Aligned_cols=35  Identities=23%  Similarity=0.300  Sum_probs=21.2

Q ss_pred             hhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 038916           80 LLADNQRLAATHVALKQELEVAQYELQRMVHYADS  114 (300)
Q Consensus        80 L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~  114 (300)
                      |=..|++|++....|+..+....+.=.+|..-+.+
T Consensus        13 L~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~   47 (193)
T PF14662_consen   13 LQLNNQKLADENAKLQRSVETAEEGNAQLAEEITD   47 (193)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33566777777777776666666665555533333

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=87.52  E-value=16  Score=30.80  Aligned_cols=50  Identities=48%  Similarity=0.637  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhh-cccHHHHHHHHHHHHHHHHHHHHhhhhh
Q 038916          146 ELLKVQADIKELTAVRQELTDL-QQVPALKAEIENVKQELQRARAAIEFDK  195 (300)
Q Consensus       146 El~ql~aE~q~L~a~RqEL~d~-qQv~al~aEl~~lRqEl~r~R~a~e~Ek  195 (300)
                      |+++=-.+++.|..+|.++.++ .++..++++++.++.+|.......+.+|
T Consensus        50 El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk  100 (132)
T PF07926_consen   50 ELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQK  100 (132)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            4445555677777777777533 2355566666666666655555555544

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=87.49  E-value=45  Score=37.71  Aligned_cols=97  Identities=19%  Similarity=0.279  Sum_probs=50.3

Q ss_pred             HHHHhHHHHHhhhhhccch-------hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh---hHHHHHHHHHHHHHhHHh--
Q 038916           69 HLAAQHQDIQGLLADNQRL-------AATHVALKQELEVAQYELQRMVHYADSFRMD---KDVQMREMYDKSVQLEVD--  136 (300)
Q Consensus        69 ~la~Q~~Ei~~L~~dNqRL-------a~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e---~Elq~r~l~~k~~K~EaE--  136 (300)
                      ++..+..+|..|..+-|++       -..|-.|++++.....|.+++...+.-...+   -.+.+..+-+..--.|+|  
T Consensus       693 ~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~  772 (1200)
T KOG0964|consen  693 EIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELG  772 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence            3445555555566655554       4556777777777777776665433322221   111122222222222222  


Q ss_pred             -----------hhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916          137 -----------LRGVEAMRSELLKVQADIKELTAVRQELT  165 (300)
Q Consensus       137 -----------lra~e~lr~El~ql~aE~q~L~a~RqEL~  165 (300)
                                 ...+..+..|+.++.-++..+..-|.+|+
T Consensus       773 sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~  812 (1200)
T KOG0964|consen  773 SELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIE  812 (1200)
T ss_pred             HHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence                       23355566666666666666666666654

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=86.91  E-value=43  Score=34.98  Aligned_cols=161  Identities=12%  Similarity=0.157  Sum_probs=104.7

Q ss_pred             HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHH-------HhhhhhhhhhhHHHHHHHHHHHHHhHHh
Q 038916           64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRM-------VHYADSFRMDKDVQMREMYDKSVQLEVD  136 (300)
Q Consensus        64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L-------~~~i~~~r~e~Elq~r~l~~k~~K~EaE  136 (300)
                      ..||++|+.=..++..|-.=  --..+|..-++-|...+.++..|       =.....++.+=--|+.+|.+...+|..+
T Consensus       164 ~~Le~~L~~ie~~F~~f~~l--t~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~  241 (560)
T PF06160_consen  164 EELEKQLENIEEEFSEFEEL--TENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEE  241 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHC
Confidence            56888877666665554221  11233444444444444444444       4444444444445677777888888776


Q ss_pred             hhhhH--HHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHH
Q 038916          137 LRGVE--AMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLIS  214 (300)
Q Consensus       137 lra~e--~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlis  214 (300)
                      -=.+.  .+-.++.+++..+.++...=.+|    .+......++.+..+|...-..++.|.++...--+..+.+...|..
T Consensus       242 gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l----~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~  317 (560)
T PF06160_consen  242 GYYLEHLDIEEEIEQIEEQLEEALALLKNL----ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEH  317 (560)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            44343  36777888888766666666666    7778888888888888888888888888887777777777777777


Q ss_pred             HHHHHHHHHHHHHhHH
Q 038916          215 MARELEKLRAEIANSE  230 (300)
Q Consensus       215 MarEvekLRael~n~e  230 (300)
                      +......|..+++...
T Consensus       318 ~~~~~~~l~~e~~~v~  333 (560)
T PF06160_consen  318 AKEQNKELKEELERVS  333 (560)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777777777765443

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=86.76  E-value=62  Score=36.72  Aligned_cols=77  Identities=26%  Similarity=0.275  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916          147 LLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEI  226 (300)
Q Consensus       147 l~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael  226 (300)
                      +.|+-....++...-.||  .++|..+..-|.+-.+|+.+.-+-|+.+|       +|.+.|--.+.-...-+|.|+..+
T Consensus       469 ~~q~ls~~~Q~~~et~el--~~~iknlnk~L~~r~~elsrl~a~~~elk-------eQ~kt~~~qye~~~~k~eeLe~~l  539 (1195)
T KOG4643|consen  469 LDQLLSLQDQLEAETEEL--LNQIKNLNKSLNNRDLELSRLHALKNELK-------EQYKTCDIQYELLSNKLEELEELL  539 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444433333  34477778888888889988888887776       777778777777778888888888


Q ss_pred             HhHHHH
Q 038916          227 ANSEKR  232 (300)
Q Consensus       227 ~n~ekR  232 (300)
                      -|.|++
T Consensus       540 ~~lE~E  545 (1195)
T KOG4643|consen  540 GNLEEE  545 (1195)
T ss_pred             hhHHHH
Confidence            777664

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=86.68  E-value=27  Score=33.90  Aligned_cols=49  Identities=16%  Similarity=0.201  Sum_probs=29.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhh
Q 038916           90 THVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLR  138 (300)
Q Consensus        90 ~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElr  138 (300)
                      -|..++|.....+.|+..+..--..+.++-|-|...+-.+..+++++.+
T Consensus        21 l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nq   69 (333)
T KOG1853|consen   21 LHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQ   69 (333)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556777777777777666643344444444445555556666666555

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=86.48  E-value=35  Score=33.58  Aligned_cols=28  Identities=18%  Similarity=0.068  Sum_probs=14.3

Q ss_pred             hccchhhhHHHHHHHHHHHHHHHHHHHh
Q 038916           83 DNQRLAATHVALKQELEVAQYELQRMVH  110 (300)
Q Consensus        83 dNqRLa~~h~aLrqeLaa~~~Elq~L~~  110 (300)
                      +|.-|=..-..++.+-...+.|+..|..
T Consensus        35 en~~Lk~El~~ek~~~~~L~~e~~~lr~   62 (310)
T PF09755_consen   35 ENRVLKRELETEKARCKHLQEENRALRE   62 (310)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444455555555555555553

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=86.34  E-value=28  Score=32.65  Aligned_cols=31  Identities=16%  Similarity=0.231  Sum_probs=18.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 038916          205 GQVMEKKLISMARELEKLRAEIANSEKRARA  235 (300)
Q Consensus       205 ~qaMeknlisMarEvekLRael~n~ekR~ra  235 (300)
                      +..-+++-..+..+++..|..+..++.++..
T Consensus        98 ~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~  128 (246)
T PF00769_consen   98 SERKEEEAEELQEELEEAREDEEEAKEELLE  128 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445556666666666777666666666543

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=86.02  E-value=6.8  Score=41.66  Aligned_cols=88  Identities=23%  Similarity=0.323  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhh---hhhhHHHHHHHHHHHH
Q 038916          141 EAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAEN---YEHGQVMEKKLISMAR  217 (300)
Q Consensus       141 e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~---~eQ~qaMeknlisMar  217 (300)
                      .....++..++.-+++|....++|.  --+..++.+|+.|+.+|.+.+.-+..+.....+-   -.-+-.++++|..=..
T Consensus       418 ~~~~~~i~~~~~~ve~l~~e~~~L~--~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~  495 (652)
T COG2433         418 TVYEKRIKKLEETVERLEEENSELK--RELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKK  495 (652)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566666666666666666652  2356777888888888888888877665443331   1234566677777777


Q ss_pred             HHHHHHHHHHhHH
Q 038916          218 ELEKLRAEIANSE  230 (300)
Q Consensus       218 EvekLRael~n~e  230 (300)
                      +++.|...|+..+
T Consensus       496 ~ve~L~~~l~~l~  508 (652)
T COG2433         496 RVEELERKLAELR  508 (652)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777776665

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=85.99  E-value=50  Score=37.90  Aligned_cols=25  Identities=12%  Similarity=0.344  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916          207 VMEKKLISMARELEKLRAEIANSEK  231 (300)
Q Consensus       207 aMeknlisMarEvekLRael~n~ek  231 (300)
                      .|.+++-..+++++-+++.+.....
T Consensus       574 ~~~~~~~~~rqrveE~ks~~~~~~s  598 (1293)
T KOG0996|consen  574 NLKSQLNKLRQRVEEAKSSLSSSRS  598 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3444455555555555555544433

>PRK11519 tyrosine kinase; Provisional

Probab=85.83  E-value=21  Score=38.18  Aligned_cols=31  Identities=6%  Similarity=0.108  Sum_probs=24.4

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916          199 AENYEHGQVMEKKLISMARELEKLRAEIANS  229 (300)
Q Consensus       199 ~e~~eQ~qaMeknlisMarEvekLRael~n~  229 (300)
                      ...+..++..+.++..+.||++-.+.-+...
T Consensus       359 ~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~l  389 (719)
T PRK11519        359 NGRVTAMPKTQQEIVRLTRDVESGQQVYMQL  389 (719)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667888999999999999888877644

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=85.50  E-value=15  Score=38.86  Aligned_cols=98  Identities=24%  Similarity=0.399  Sum_probs=56.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhH-hhcc----cHHHHHHHHHHHHHHHHHHHHhhh--hhhchhhhhh-hhHHHH
Q 038916          138 RGVEAMRSELLKVQADIKELTAVRQELT-DLQQ----VPALKAEIENVKQELQRARAAIEF--DKKGYAENYE-HGQVME  209 (300)
Q Consensus       138 ra~e~lr~El~ql~aE~q~L~a~RqEL~-d~qQ----v~al~aEl~~lRqEl~r~R~a~e~--Ekk~~~e~~e-Q~qaMe  209 (300)
                      +.++.|.++|..+..++..+......|+ ..+|    +....+++..+.+|+.-...+++.  +...|.+.|+ .+.+=+
T Consensus       328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~  407 (594)
T PF05667_consen  328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASE  407 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            3355666666666666666666555554 2222    233344444444554444444433  2223333332 344557


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHH
Q 038916          210 KKLISMARELEKLRAEIANSEKRARA  235 (300)
Q Consensus       210 knlisMarEvekLRael~n~ekR~ra  235 (300)
                      .+|+.++++-|+-|+.|..+-.+++.
T Consensus       408 ~rl~~L~~qWe~~R~pL~~e~r~lk~  433 (594)
T PF05667_consen  408 QRLVELAQQWEKHRAPLIEEYRRLKE  433 (594)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            88999999999999999866665554

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=85.41  E-value=10  Score=33.97  Aligned_cols=25  Identities=24%  Similarity=0.405  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhHHHHHhhhhhccchh
Q 038916           64 AIIEEHLAAQHQDIQGLLADNQRLA   88 (300)
Q Consensus        64 ~~lEe~la~Q~~Ei~~L~~dNqRLa   88 (300)
                      .-+++++.....|+..+...+..|+
T Consensus        70 ~~le~~~~~l~~ELael~r~~~el~   94 (194)
T PF08614_consen   70 SSLEQKLAKLQEELAELYRSKGELA   94 (194)
T ss_dssp             -------------------------
T ss_pred             ccccccccccccccccccccccccc
Confidence            3445555555444444444444333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK09343 prefoldin subunit beta; Provisional

Probab=85.16  E-value=21  Score=29.91  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=10.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Q 038916          205 GQVMEKKLISMARELEKLRAEI  226 (300)
Q Consensus       205 ~qaMeknlisMarEvekLRael  226 (300)
                      ++.+|++...+...+++++..|
T Consensus        87 ik~lekq~~~l~~~l~e~q~~l  108 (121)
T PRK09343         87 SRTLEKQEKKLREKLKELQAKI  108 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555544444444444443

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=85.03  E-value=19  Score=31.31  Aligned_cols=49  Identities=24%  Similarity=0.425  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHH
Q 038916          141 EAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARA  189 (300)
Q Consensus       141 e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~  189 (300)
                      ..+++++..+..+++.|.+.-..|...--...+..+|..+.+|+.....
T Consensus        82 ~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~  130 (169)
T PF07106_consen   82 KELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEE  130 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3555666666666555554444443111223444444444444444333

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles

Probab=84.98  E-value=9.8  Score=28.82  Aligned_cols=44  Identities=16%  Similarity=0.422  Sum_probs=34.0

Q ss_pred             hHHHHHHHHHHHHHHHHHH-HHHHHhHhhcccHHHHHHHHHHHHHHH
Q 038916          140 VEAMRSELLKVQADIKELT-AVRQELTDLQQVPALKAEIENVKQELQ  185 (300)
Q Consensus       140 ~e~lr~El~ql~aE~q~L~-a~RqEL~d~qQv~al~aEl~~lRqEl~  185 (300)
                      ++.+.+-|.||..|++.+. +.|..+  ..+|...+.+|+.++++|.
T Consensus        34 l~ea~~~l~qMe~E~~~~p~s~r~~~--~~kl~~yr~~l~~lk~~l~   78 (79)
T PF05008_consen   34 LDEAEELLKQMELEVRSLPPSERNQY--KSKLRSYRSELKKLKKELK   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHCTS-HHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHH--HHHHHHHHHHHHHHHHHhc
Confidence            4567777889999999987 677777  4568888888888888875

The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=84.63  E-value=17  Score=37.18  Aligned_cols=70  Identities=16%  Similarity=0.136  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhh---hHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038916           92 VALKQELEVAQYELQRMVHYADSFRMD---KDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQEL  164 (300)
Q Consensus        92 ~aLrqeLaa~~~Elq~L~~~i~~~r~e---~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL  164 (300)
                      ..+.|+|+.+.++|+---.....+.++   -+...+.+..+..+.|.+|+   .|++|..|+..|.=...+...-|
T Consensus         9 s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~---~Lq~e~~~l~e~~v~~~a~~~~~   81 (459)
T KOG0288|consen    9 SENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELN---RLQEENTQLNEERVREEATEKTL   81 (459)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666666664333322222222   22234455555555555544   45555555555544433333333

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=84.21  E-value=28  Score=30.50  Aligned_cols=95  Identities=19%  Similarity=0.279  Sum_probs=63.1

Q ss_pred             HHHHHhHHhhhhhHHHHH-----HHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhh
Q 038916          128 DKSVQLEVDLRGVEAMRS-----ELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENY  202 (300)
Q Consensus       128 ~k~~K~EaElra~e~lr~-----El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~  202 (300)
                      ....+++..++..+.+-+     +-.|+..|.+.|.         .+|..=..||..|+.-.....+.++.-|..-....
T Consensus        20 ~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~---------~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~   90 (177)
T PF13870_consen   20 HQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLN---------EKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLS   90 (177)
T ss_pred             HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555443     2334444444443         24455566777777777777777777777777778


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 038916          203 EHGQVMEKKLISMARELEKLRAEIANSEK  231 (300)
Q Consensus       203 eQ~qaMeknlisMarEvekLRael~n~ek  231 (300)
                      .....|+.+|.....++.++|.++..++.
T Consensus        91 ~~~~~l~~~l~~~~~~~~~~r~~l~~~k~  119 (177)
T PF13870_consen   91 EELERLKQELKDREEELAKLREELYRVKK  119 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888876655

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=83.88  E-value=12  Score=28.89  Aligned_cols=37  Identities=16%  Similarity=0.184  Sum_probs=22.9

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 038916           86 RLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQ  122 (300)
Q Consensus        86 RLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq  122 (300)
                      +|-+...+|+.+|..+.+.+...-.....++.|+|.-
T Consensus         2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~   38 (69)
T PF14197_consen    2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSA   38 (69)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566677777777777777655554455555555443

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=83.72  E-value=46  Score=32.56  Aligned_cols=27  Identities=26%  Similarity=0.357  Sum_probs=14.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916          200 ENYEHGQVMEKKLISMARELEKLRAEI  226 (300)
Q Consensus       200 e~~eQ~qaMeknlisMarEvekLRael  226 (300)
                      +..+|.|.....|+.+-++++.+|.+.
T Consensus       183 ~la~eaqe~he~m~k~~~~~De~Rkea  209 (294)
T COG1340         183 ELANEAQEYHEEMIKLFEEADELRKEA  209 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555544

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=83.65  E-value=35  Score=31.12  Aligned_cols=25  Identities=16%  Similarity=0.367  Sum_probs=11.7

Q ss_pred             hhcccHHHHHHHHHHHHHHHHHHHH
Q 038916          166 DLQQVPALKAEIENVKQELQRARAA  190 (300)
Q Consensus       166 d~qQv~al~aEl~~lRqEl~r~R~a  190 (300)
                      +...+..+..++..+..|+.+..+.
T Consensus       162 e~kK~~~~~~~~~~l~~ei~~L~~k  186 (194)
T PF15619_consen  162 EKKKHKEAQEEVKSLQEEIQRLNQK  186 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445555555555444433

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=83.63  E-value=1.1e+02  Score=36.83  Aligned_cols=60  Identities=22%  Similarity=0.324  Sum_probs=27.9

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHhh---hhhhchhhhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916          168 QQVPALKAEIENVKQELQRARAAIE---FDKKGYAENY-EHGQVMEKKLISMARELEKLRAEIA  227 (300)
Q Consensus       168 qQv~al~aEl~~lRqEl~r~R~a~e---~Ekk~~~e~~-eQ~qaMeknlisMarEvekLRael~  227 (300)
                      ++|-.|.-+|..++.+++..+.-|.   -++.....++ -++-+|++++.+.-.++-.++..|+
T Consensus       805 ~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~  868 (1822)
T KOG4674|consen  805 SRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIA  868 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555556555555555443332   2222222222 2455555555555555544444443

>PRK10884 SH3 domain-containing protein; Provisional

Probab=83.59  E-value=25  Score=32.38  Aligned_cols=12  Identities=0%  Similarity=0.155  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHH
Q 038916           97 ELEVAQYELQRM  108 (300)
Q Consensus        97 eLaa~~~Elq~L  108 (300)
                      .|...++||..|
T Consensus        94 rlp~le~el~~l  105 (206)
T PRK10884         94 RVPDLENQVKTL  105 (206)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=83.53  E-value=75  Score=34.91  Aligned_cols=76  Identities=21%  Similarity=0.288  Sum_probs=37.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHHHHHHHHHhHHhhhhhHHHHHH--HHHHHHHHHHHHHHHHHhH
Q 038916           89 ATHVALKQELEVAQYELQRMVHYADSFRM-DKDVQMREMYDKSVQLEVDLRGVEAMRSE--LLKVQADIKELTAVRQELT  165 (300)
Q Consensus        89 ~~h~aLrqeLaa~~~Elq~L~~~i~~~r~-e~Elq~r~l~~k~~K~EaElra~e~lr~E--l~ql~aE~q~L~a~RqEL~  165 (300)
                      .....|++++.....+++.+.... .... ..+.....+..+.-+++..+.....+..+  +.++..+++.+....++|.
T Consensus       494 ~~~~~l~~e~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~e~l~~~~e~~~~~~~~~~~~~l~~e~~~le~~~~~l~  572 (908)
T COG0419         494 KEEAELREEIEELEKELRELEEEL-IELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELK  572 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444666666666665555333 1112 22222334444555555555555555555  4555555555555555543

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=83.42  E-value=74  Score=34.72  Aligned_cols=138  Identities=19%  Similarity=0.306  Sum_probs=83.1

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHH----HHHHHHHHHHHHHHHHH--
Q 038916           86 RLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEA----MRSELLKVQADIKELTA--  159 (300)
Q Consensus        86 RLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~----lr~El~ql~aE~q~L~a--  159 (300)
                      .|-.+-..||-+|.....|+..-..-+..---..|.-.|.+.-...+.+..+..++.    +|.   |++.-...+..  
T Consensus       538 ~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrK---qvEnk~K~ieeLq  614 (786)
T PF05483_consen  538 NLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRK---QVENKNKNIEELQ  614 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHHhHHHHHH
Confidence            344444445555555555554433211211123444555555555555555543322    222   12222222222  


Q ss_pred             -----HHHHhH-hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916          160 -----VRQELT-DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANS  229 (300)
Q Consensus       160 -----~RqEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~  229 (300)
                           ++..++ +..|+..+--.|..++-|+..+...++-+-..+..+++--.+.+.+|.   -||+|++...+-|
T Consensus       615 qeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~---~EveK~k~~a~EA  687 (786)
T PF05483_consen  615 QENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELL---GEVEKAKLTADEA  687 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHH
Confidence                 222333 667888888888999999999999999999999999998888887765   5899999877655

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=83.37  E-value=30  Score=30.25  Aligned_cols=27  Identities=30%  Similarity=0.347  Sum_probs=14.8

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhhh
Q 038916           86 RLAATHVALKQELEVAQYELQRMVHYA  112 (300)
Q Consensus        86 RLa~~h~aLrqeLaa~~~Elq~L~~~i  112 (300)
                      ++...-..+++.+...++|+..+...+
T Consensus        78 ~~~~e~~~~~~~l~~l~~el~~l~~~~  104 (191)
T PF04156_consen   78 RLQGELSELQQQLQQLQEELDQLQERI  104 (191)
T ss_pred             hhhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence            444455555666666666665554333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=83.36  E-value=73  Score=34.61  Aligned_cols=63  Identities=25%  Similarity=0.315  Sum_probs=44.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhch----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 038916          170 VPALKAEIENVKQELQRARAAIEFDKKGY----AENYEHGQVMEKKLISMARELEKLRAEIANSEKR  232 (300)
Q Consensus       170 v~al~aEl~~lRqEl~r~R~a~e~Ekk~~----~e~~eQ~qaMeknlisMarEvekLRael~n~ekR  232 (300)
                      +..+++-|+.++.-+..++..++..++..    .=.-.|++.+...|-.+..+|..+-.+|-+-+|.
T Consensus       648 l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~  714 (717)
T PF10168_consen  648 LQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKI  714 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55666677777766666666665443322    2234688999999999999999999998776654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=83.06  E-value=22  Score=38.82  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHH
Q 038916          208 MEKKLISMARELEKLRAEIANSE  230 (300)
Q Consensus       208 MeknlisMarEvekLRael~n~e  230 (300)
                      |.+.=+.+...+|+||.+++--+
T Consensus       235 ~~~~k~rl~~d~E~Lr~e~~qL~  257 (916)
T KOG0249|consen  235 MRHDKDKLRTDIEDLRGELDQLR  257 (916)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHH
Confidence            33333344445566666665444

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=82.93  E-value=35  Score=34.97  Aligned_cols=84  Identities=19%  Similarity=0.249  Sum_probs=39.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHH
Q 038916          140 VEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMAREL  219 (300)
Q Consensus       140 ~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEv  219 (300)
                      ...+.+++..++++.+.+.+.-++.+  --+..|+.|...++.|..+.+++.++    +..++.+....+--+..=-+|+
T Consensus        29 ~s~~~aq~~~~~a~~~ai~a~~~~~E--~~l~~Lq~e~~~l~e~~v~~~a~~~~----~t~~~~~~en~~~r~~~eir~~  102 (459)
T KOG0288|consen   29 QSRLSAQLVILRAESRAIKAKLQEKE--LELNRLQEENTQLNEERVREEATEKT----LTVDVLIAENLRIRSLNEIREL  102 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555544444332  12445566666666666665554443    2333333333333333333444


Q ss_pred             HHHHHHHHhH
Q 038916          220 EKLRAEIANS  229 (300)
Q Consensus       220 ekLRael~n~  229 (300)
                      .+-++++.|+
T Consensus       103 ~~q~~e~~n~  112 (459)
T KOG0288|consen  103 REQKAEFENA  112 (459)
T ss_pred             HHhhhhhccc
Confidence            4444444443

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=82.90  E-value=34  Score=32.05  Aligned_cols=67  Identities=19%  Similarity=0.271  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHhH-hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 038916          149 KVQADIKELTAVRQELT-DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAE  225 (300)
Q Consensus       149 ql~aE~q~L~a~RqEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRae  225 (300)
                      ..+.|...|...|...+ +++||-.++-.|+++=++....|..+...          +.-+..++.-+..||.++|.+
T Consensus        36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~----------i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK----------IQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444443 44666666666666555444433332222          223334555666666666666

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=82.86  E-value=0.8  Score=41.00  Aligned_cols=33  Identities=39%  Similarity=0.473  Sum_probs=14.5

Q ss_pred             HHHHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHH
Q 038916           64 AIIEEHLAAQHQDIQGLLADNQRLAATHVALKQELEV  100 (300)
Q Consensus        64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa  100 (300)
                      ++||++|    .|-..|..++|||-+.---|+|||.+
T Consensus        17 alLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V   49 (166)
T PF04880_consen   17 ALLESEL----DEKENLREEVQRLKDELRDLKQELIV   49 (166)
T ss_dssp             HHHHHHH----HHHHHHHHCH----------------
T ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889888    67788999999998877777777733

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=82.52  E-value=76  Score=36.06  Aligned_cols=19  Identities=21%  Similarity=0.268  Sum_probs=8.3

Q ss_pred             hhhhHHHHHHHHHHHHHHH
Q 038916           87 LAATHVALKQELEVAQYEL  105 (300)
Q Consensus        87 La~~h~aLrqeLaa~~~El  105 (300)
                      +.++...|+.++.-.+++|
T Consensus       739 ~~~~~~~~~e~v~e~~~~I  757 (1174)
T KOG0933|consen  739 LLDDLKELLEEVEESEQQI  757 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444

>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=82.16  E-value=10  Score=34.87  Aligned_cols=58  Identities=31%  Similarity=0.342  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916          172 ALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANS  229 (300)
Q Consensus       172 al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~  229 (300)
                      .|.++|+.++|-+-..+..|+..|..+.+-=+---.+.+.+.++..+++-+|.++++-
T Consensus        85 eLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~  142 (203)
T KOG3433|consen   85 ELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKI  142 (203)
T ss_pred             HHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467888888888888889999887665544444489999999999999999998754

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=81.91  E-value=89  Score=35.12  Aligned_cols=47  Identities=17%  Similarity=0.263  Sum_probs=21.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHh---hhhhhchhhhhhhhHHHHHHHHHHH
Q 038916          170 VPALKAEIENVKQELQRARAAI---EFDKKGYAENYEHGQVMEKKLISMA  216 (300)
Q Consensus       170 v~al~aEl~~lRqEl~r~R~a~---e~Ekk~~~e~~eQ~qaMeknlisMa  216 (300)
                      +..+.+.+..+++++..++..+   ....+...+...+...+.+.+....
T Consensus       824 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  873 (1047)
T PRK10246        824 VEQIQQELAQLAQQLRENTTRQGEIRQQLKQDADNRQQQQALMQQIAQAT  873 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666666555544433   2233333444444444444444444

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=81.69  E-value=88  Score=34.40  Aligned_cols=98  Identities=19%  Similarity=0.265  Sum_probs=46.5

Q ss_pred             hhhhhhhhHHHHHHHHHHH------HHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHH
Q 038916          112 ADSFRMDKDVQMREMYDKS------VQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQ  185 (300)
Q Consensus       112 i~~~r~e~Elq~r~l~~k~------~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~  185 (300)
                      +..+|-|+|..+.+.+.+.      .|+|=|.+ +..+..+|..+.+|.-.|...-             .+-+.+=.||.
T Consensus        61 lr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~-l~e~~~~l~~~~~e~~~l~~~l-------------~~~~~~i~~l~  126 (769)
T PF05911_consen   61 LRQVREEQEQKIHEAVAKKSKEWEKIKSELEAK-LAELSKRLAESAAENSALSKAL-------------QEKEKLIAELS  126 (769)
T ss_pred             HHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHH-------------HHHHHHHHHHH
Confidence            4455567777766655543      22222222 3444445555555544444322             33334444455


Q ss_pred             HHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916          186 RARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEI  226 (300)
Q Consensus       186 r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael  226 (300)
                      ..++..+.|.   ......+.++||+.-+++-|+.-+--||
T Consensus       127 ~~~~~~e~~~---~~l~~~l~~~eken~~Lkye~~~~~kel  164 (769)
T PF05911_consen  127 EEKSQAEAEI---EDLMARLESTEKENSSLKYELHVLSKEL  164 (769)
T ss_pred             HHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555554   2223334455555555555555544444

The function of this family is unknown.

>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]

Probab=81.53  E-value=5.2  Score=42.50  Aligned_cols=18  Identities=44%  Similarity=0.589  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 038916          147 LLKVQADIKELTAVRQEL  164 (300)
Q Consensus       147 l~ql~aE~q~L~a~RqEL  164 (300)
                      +.-+.-|+.+|++-||||
T Consensus        88 ~~sVs~EL~ele~krqel  105 (907)
T KOG2264|consen   88 LASVSLELTELEVKRQEL  105 (907)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334445555566666666

>TIGR00634 recN DNA repair protein RecN

Probab=81.22  E-value=36  Score=35.32  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=9.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Q 038916          205 GQVMEKKLISMARELEKLRAEI  226 (300)
Q Consensus       205 ~qaMeknlisMarEvekLRael  226 (300)
                      +..+++.+.....++.++-.+|
T Consensus       348 le~L~~el~~l~~~l~~~a~~L  369 (563)
T TIGR00634       348 LEALEEEVDKLEEELDKAAVAL  369 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444443333

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=81.04  E-value=64  Score=32.40  Aligned_cols=30  Identities=10%  Similarity=0.228  Sum_probs=16.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 038916          201 NYEHGQVMEKKLISMARELEKLRAEIANSE  230 (300)
Q Consensus       201 ~~eQ~qaMeknlisMarEvekLRael~n~e  230 (300)
                      -.+++...+.++.....++++++..+.+..
T Consensus       289 ~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~  318 (457)
T TIGR01000       289 VKQEITDLNQKLLELESKIKSLKEDSQKGV  318 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence            344455555566666666666666554443

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=80.87  E-value=85  Score=33.69  Aligned_cols=52  Identities=21%  Similarity=0.379  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916          173 LKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIA  227 (300)
Q Consensus       173 l~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~  227 (300)
                      .-.+|.-|-.++++.+++..-|.   .....|++++|+.+.+-..|+++|+..+.
T Consensus       290 kd~~i~~L~~di~~~~~S~~~e~---e~~~~qI~~le~~l~~~~~~leel~~kL~  341 (629)
T KOG0963|consen  290 KDSEIAQLSNDIERLEASLVEER---EKHKAQISALEKELKAKISELEELKEKLN  341 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445555556666666665555   45566888888888888888888877663

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=80.79  E-value=76  Score=34.03  Aligned_cols=76  Identities=17%  Similarity=0.335  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHhH-hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916          154 IKELTAVRQELT-DLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEH-GQVMEKKLISMARELEKLRAEIANS  229 (300)
Q Consensus       154 ~q~L~a~RqEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ-~qaMeknlisMarEvekLRael~n~  229 (300)
                      .-.+..+-.||. +.+.|..+..|.+.++++++.+-.-...+|.-..+.+.+ .--|++.+--+..+|+++++.+.++
T Consensus       234 ~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e  311 (629)
T KOG0963|consen  234 AAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEE  311 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555666666 445688999999999999988766666653222221111 1124555555555555555555443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=80.68  E-value=58  Score=35.52  Aligned_cols=35  Identities=29%  Similarity=0.453  Sum_probs=17.4

Q ss_pred             HHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHH
Q 038916           75 QDIQGLLADNQRLAATHVALKQELEVAQYELQRMV  109 (300)
Q Consensus        75 ~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~  109 (300)
                      .++-+-..||-||...+..|+.+......+..+|.
T Consensus        48 ~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr   82 (717)
T PF09730_consen   48 QELSNVQAENERLSQLNQELRKECEDLELERKRLR   82 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555555555555444444444

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=80.55  E-value=17  Score=35.43  Aligned_cols=25  Identities=16%  Similarity=0.355  Sum_probs=17.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHh
Q 038916          204 HGQVMEKKLISMARELEKLRAEIAN  228 (300)
Q Consensus       204 Q~qaMeknlisMarEvekLRael~n  228 (300)
                      |+..-++.|+.+.+||-+|+.+|+.
T Consensus       103 Ql~s~Kkqie~Leqelkr~KsELEr  127 (307)
T PF10481_consen  103 QLNSCKKQIEKLEQELKRCKSELER  127 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566777777777777777763

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=80.21  E-value=16  Score=39.06  Aligned_cols=80  Identities=16%  Similarity=0.263  Sum_probs=48.0

Q ss_pred             HHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH--------hhcccHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 038916          126 MYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELT--------DLQQVPALKAEIENVKQELQRARAAIEFDKKG  197 (300)
Q Consensus       126 l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~--------d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~  197 (300)
                      +-.+.-+++.|.+   .|+.++.++..++.+|.+-..++.        -...+.++..+|+.|+.+|+.....++. +++
T Consensus       427 ~~~~ve~l~~e~~---~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~-L~~  502 (652)
T COG2433         427 LEETVERLEEENS---ELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEE-LER  502 (652)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            3333444444433   455566666666555555444443        2234788888888899888887777663 445


Q ss_pred             hhhhhhhhHHHH
Q 038916          198 YAENYEHGQVME  209 (300)
Q Consensus       198 ~~e~~eQ~qaMe  209 (300)
                      ....+.+++.||
T Consensus       503 ~l~~l~k~~~lE  514 (652)
T COG2433         503 KLAELRKMRKLE  514 (652)
T ss_pred             HHHHHHHHHhhh
Confidence            555566666665

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]

Probab=80.16  E-value=48  Score=30.40  Aligned_cols=92  Identities=25%  Similarity=0.294  Sum_probs=57.7

Q ss_pred             HHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhc----hhh
Q 038916          125 EMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKG----YAE  200 (300)
Q Consensus       125 ~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~----~~e  200 (300)
                      .|-.++.++++-+|   ++.+++.-|+||++.|.++   |    -++.+..+|..|+.|...-|--+..=|.+    ..+
T Consensus        83 ~ld~~i~~l~ek~q---~l~~t~s~veaEik~L~s~---L----t~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpe  152 (201)
T KOG4603|consen   83 VLDGKIVALTEKVQ---SLQQTCSYVEAEIKELSSA---L----TTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPE  152 (201)
T ss_pred             HHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh---c----ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence            34556677776555   6777888888888877664   2    44455555555555444333333322222    246


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916          201 NYEHGQVMEKKLISMARELEKLRAEI  226 (300)
Q Consensus       201 ~~eQ~qaMeknlisMarEvekLRael  226 (300)
                      +.+|+.-|-....+|=+...+.-.+|
T Consensus       153 dk~~v~~~y~~~~~~wrk~krmf~ei  178 (201)
T KOG4603|consen  153 DKEQVYREYQKYCKEWRKRKRMFREI  178 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888888888887776665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	300
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-05

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.9 bits (127), Expect = 6e-08
 Identities = 31/169 (18%), Positives = 62/169 (36%), Gaps = 6/169 (3%)

Query: 70   LAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDK 129
            L  + Q    L A+ + +     A KQELE   +E++  +   +        + ++M  +
Sbjct: 897  LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956

Query: 130  SVQLEVDLRGVEAMRSELLK----VQADIKELTAVRQELTDLQQVPALKAEIENVKQELQ 185
             + LE  L   EA R +L          IK++      + D  Q   L  E + +++ + 
Sbjct: 957  MLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED--QNNKLTKERKLLEERVS 1014

Query: 186  RARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRAR 234
                 +  +++      +     E  +  +   L+K        EK  R
Sbjct: 1015 DLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKR 1063

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 31/168 (18%), Positives = 68/168 (40%), Gaps = 2/168 (1%)

Query: 67   EEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREM 126
            +  +     DI  +   N +L      L++ +      L      A +    K+     +
Sbjct: 982  DGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMI 1041

Query: 127  YDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQR 186
             +  V+L+ + +  + +     K++ +  +L     EL    Q+  LKA++   ++ELQ 
Sbjct: 1042 SELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ--AQIAELKAQLAKKEEELQA 1099

Query: 187  ARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRAR 234
            A A +E +        +  + +E  +  +  +LE  +A    +EK+ R
Sbjct: 1100 ALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKR 1147

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 22/172 (12%), Positives = 72/172 (41%), Gaps = 6/172 (3%)

Query: 67   EEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREM 126
            ++ L     +++  + + +  +    A K++++    +L+  +   ++ R    ++    
Sbjct: 922  KQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA 981

Query: 127  YDKSVQLEVDLRGVEAMRSELLK----VQADIKELTAVRQELTDLQQVPALKAEIENVKQ 182
              K  ++E D+  +E   ++L K    ++  + +LT    E  +  +   L       + 
Sbjct: 982  DGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK--NLTKLKNKHES 1039

Query: 183  ELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRAR 234
             +      ++ ++K   E  +  + +E +   +  ++ +L+A+IA  + +  
Sbjct: 1040 MISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 32/189 (16%), Positives = 73/189 (38%), Gaps = 27/189 (14%)

Query: 67   EEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREM 126
            +E L    +  Q   A+ + L   H  L +E  + Q +LQ           + +     +
Sbjct: 863  DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAET----ELYAEAEEMRVRL 918

Query: 127  YDKSVQLEVDLRGVEA------------------MRSELLKVQADIKELTAVRQEL---- 164
              K  +LE  L  +EA                  M+ ++L ++  ++E  A RQ+L    
Sbjct: 919  AAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK 978

Query: 165  -TDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLR 223
             T   ++  ++ +I  ++ +  +     +  ++  ++   +    E+K  ++ +   K  
Sbjct: 979  VTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHE 1038

Query: 224  AEIANSEKR 232
            + I+  E R
Sbjct: 1039 SMISELEVR 1047

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 26/173 (15%), Positives = 63/173 (36%), Gaps = 34/173 (19%)

Query: 67   EEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREM 126
             ++L       + ++++ +         +QELE  + +L+           +   Q+ E+
Sbjct: 1027 AKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAEL 1086

Query: 127  YDKSVQLEVDLRG----VEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQ 182
              +  + E +L+     +E   S+       I+EL +                 I ++++
Sbjct: 1087 KAQLAKKEEELQAALARLEDETSQKNNALKKIRELES----------------HISDLQE 1130

Query: 183  ELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRARA 235
            +L+  +AA                  EK+   ++ ELE L+ E+ ++      
Sbjct: 1131 DLESEKAAR--------------NKAEKQKRDLSEELEALKTELEDTLDTTAT 1169

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 14/160 (8%)

Query: 67   EEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREM 126
            +  +  Q+++ + LL     L  T+    ++L      L+             + + +  
Sbjct: 934  QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM-----------SEEEAKNA 982

Query: 127  YDKSVQLEVDLRGVEAMRSELLKVQADIKE-LTAVRQELTDLQQVPALKAEIENVKQELQ 185
             ++ + L+ ++  +     +    +  I+E     + E   L     LK +   +K E +
Sbjct: 983  TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS--ELKEQNTLLKTEKE 1040

Query: 186  RARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAE 225
                 I    K   E  E   V E K + +    E+LR +
Sbjct: 1041 ELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 28/166 (16%), Positives = 58/166 (34%), Gaps = 16/166 (9%)

Query: 85  QRLAATHVALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMR 144
           Q+    +V  K+   +    +            +K   M   + KS+ ++  +RG  A  
Sbjct: 823 QKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREH-KSIIIQKHVRGWLARV 881

Query: 145 SELLKVQADI------------KELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIE 192
                ++A +            +EL  ++ E   +++   L   +EN   +LQR      
Sbjct: 882 HYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQN 941

Query: 193 FDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRARAAAA 238
            + K   E   +   +E    +   +L      +  SE+ A+ A  
Sbjct: 942 KEYKSLLEKMNN---LEITYSTETEKLRSDVERLRMSEEEAKNATN 984

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	300
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.52
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	96.27
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.09
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.35
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	95.3
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.27
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	94.91
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	94.82
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.79
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	94.78
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.5
3lay_A	175	Zinc resistance-associated protein; salmonella typ	94.25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.67
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	93.28
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	92.33
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	90.56
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	90.3
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	89.63
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	89.06
3lay_A	175	Zinc resistance-associated protein; salmonella typ	88.79
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	87.85
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	87.58
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	86.91
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	85.87
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	85.84
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	85.31
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	84.59
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	84.18
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	82.64
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	82.24
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	81.7
1s94_A	180	S-syntaxin; three helix bundle, structural plastic	81.34
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	80.44
1ez3_A	127	Syntaxin-1A; three helix bundle, endocytosis/exocy	80.05
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	80.05

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.52  E-value=0.12  Score=61.52  Aligned_cols=159  Identities=14%  Similarity=0.189  Sum_probs=81.7

Q ss_pred             HHHHHHHHHhHHHHHhhhhhccchhhhH---HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhh
Q 038916           64 AIIEEHLAAQHQDIQGLLADNQRLAATH---VALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGV  140 (300)
Q Consensus        64 ~~lEe~la~Q~~Ei~~L~~dNqRLa~~h---~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~  140 (300)
                      .+|.++...-...+.||-..-..|..+.   ..|+.+|+..+-+|..-.       .|.|.-+..+.......|..-..+
T Consensus      1906 ~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~-------~ea~~~l~~i~~~~~~ae~~k~~v 1978 (3245)
T 3vkg_A         1906 LLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKN-------EQANQKLKQMVQDQQAAEIKQKDA 1978 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777777777888888888888776   478888888888874332       122211222211111111111112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhH-hhcc---cHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHH
Q 038916          141 EAMRSELLKVQADIKELTAVRQELT-DLQQ---VPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMA  216 (300)
Q Consensus       141 e~lr~El~ql~aE~q~L~a~RqEL~-d~qQ---v~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMa  216 (300)
                      +...+++.+-..   ++.+.+.|.. |+..   +.-++++|..+.++|..+.+.+..=++.-.+.-+.+..+++++....
T Consensus      1979 ~~~~~~~~~~~~---ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~ 2055 (3245)
T 3vkg_A         1979 RELQVQLDVRNK---EIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLI 2055 (3245)
T ss_dssp             HHHHHHHHHHHH---HHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222222   2222222222 1122   12355556666666555555554433344444556667777777777


Q ss_pred             HHHHHHHHHHHhHHHH
Q 038916          217 RELEKLRAEIANSEKR  232 (300)
Q Consensus       217 rEvekLRael~n~ekR  232 (300)
                      +|.++|..+++..++|
T Consensus      2056 ~ek~~L~~e~~~~~~k 2071 (3245)
T 3vkg_A         2056 RETEQIKTESSKVKNK 2071 (3245)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777777777665554

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=96.27  E-value=0.43  Score=40.21  Aligned_cols=41  Identities=22%  Similarity=0.185  Sum_probs=16.5

Q ss_pred             HHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHH
Q 038916           67 EEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYELQR  107 (300)
Q Consensus        67 Ee~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~  107 (300)
                      +..+......|..+-.+...+......+..++.....++..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  122 (284)
T 1c1g_A           82 EADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADE  122 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444444444444444444444444444333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.09  E-value=0.096  Score=56.73  Aligned_cols=14  Identities=14%  Similarity=0.266  Sum_probs=0.0

Q ss_pred             cchhhhHHHHHHHH
Q 038916           85 QRLAATHVALKQEL   98 (300)
Q Consensus        85 qRLa~~h~aLrqeL   98 (300)
                      ..|-..-..|+++|
T Consensus       924 ~~LE~kl~eLq~rL  937 (1080)
T 2dfs_A          924 IGLENKIMQLQRKI  937 (1080)
T ss_dssp             --------------
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.35  E-value=1.5  Score=39.45  Aligned_cols=126  Identities=8%  Similarity=0.100  Sum_probs=55.8

Q ss_pred             HHHHHHHhHH--HHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh---hHHHHHHHHHHHHHhHHhhh--
Q 038916           66 IEEHLAAQHQ--DIQGLLADNQRLAATHVALKQELEVAQYELQRMVHYADSFRMD---KDVQMREMYDKSVQLEVDLR--  138 (300)
Q Consensus        66 lEe~la~Q~~--Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~i~~~r~e---~Elq~r~l~~k~~K~EaElr--  138 (300)
                      |+..+..|.-  +|.+|-..-..|+.....|+.++......+..+...+.+++.+   .|..+..+-.++.+.+..+.  
T Consensus         7 L~~L~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v   86 (256)
T 3na7_A            7 LKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI   86 (256)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            4444444443  3444433333445555555555555555555555444444442   34444555555555554432  


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhh
Q 038916          139 ----GVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEF  193 (300)
Q Consensus       139 ----a~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~  193 (300)
                          ...++..|+..+..++..+...-.|+.  .++..+.++++.+..++......++.
T Consensus        87 ~~~kE~~aL~kEie~~~~~i~~lE~eile~~--e~ie~~~~~l~~~~~~l~~~~~~l~~  143 (256)
T 3na7_A           87 KSERELRSLNIEEDIAKERSNQANREIENLQ--NEIKRKSEKQEDLKKEMLELEKLALE  143 (256)
T ss_dssp             SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                223344444444444444444333332  23333444444444444444333333

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=95.30  E-value=0.18  Score=50.80  Aligned_cols=81  Identities=22%  Similarity=0.251  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHH-HHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 038916          145 SELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQ-RARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLR  223 (300)
Q Consensus       145 ~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~-r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLR  223 (300)
                      +++.|-+.++..+....-|.  +++--....++++...|+. -+|..|.|=|..-..++.++++|+++|..+..||+||-
T Consensus        74 EdlsKnsKdseqy~k~~~E~--Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE  151 (562)
T 3ghg_A           74 FEYQKNNKDSHSLTTNIMEI--LRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE  151 (562)
T ss_dssp             THHHHHHHHHHHHHHHHHHT--TSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhchhHHHHHHHHHHH--HHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555543222221  1333333335555555555 55555555555556777899999999999999999999


Q ss_pred             HHHH
Q 038916          224 AEIA  227 (300)
Q Consensus       224 ael~  227 (300)
                      .+|+
T Consensus       152 vDId  155 (562)
T 3ghg_A          152 VDID  155 (562)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8886

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.27  E-value=1.2  Score=40.15  Aligned_cols=36  Identities=14%  Similarity=0.097  Sum_probs=18.2

Q ss_pred             HHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhh
Q 038916           76 DIQGLLADNQRLAATHVALKQELEVAQYELQRMVHY  111 (300)
Q Consensus        76 Ei~~L~~dNqRLa~~h~aLrqeLaa~~~Elq~L~~~  111 (300)
                      ++|.|-..-.+|......|..+|.....++..+...
T Consensus        12 ~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~   47 (256)
T 3na7_A           12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKA   47 (256)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            444444444455555555555555555555444433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=94.91  E-value=0.057  Score=58.60  Aligned_cols=8  Identities=63%  Similarity=0.713  Sum_probs=3.8

Q ss_pred             hhhHHhhh
Q 038916           41 ALLEEMRE   48 (300)
Q Consensus        41 ~~~~~~r~   48 (300)
                      ..+|++|.
T Consensus       781 ~~LE~~r~  788 (1184)
T 1i84_S          781 AHLEEERD  788 (1184)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            34555543

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=94.82  E-value=0.054  Score=58.75  Aligned_cols=13  Identities=23%  Similarity=0.023  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHHH
Q 038916           93 ALKQELEVAQYEL  105 (300)
Q Consensus        93 aLrqeLaa~~~El  105 (300)
                      .|+.++...+.++
T Consensus       882 ele~~l~~Le~e~  894 (1184)
T 1i84_S          882 ELEQKHTQLCEEK  894 (1184)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.79  E-value=0.2  Score=49.14  Aligned_cols=29  Identities=14%  Similarity=0.117  Sum_probs=18.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 038916          204 HGQVMEKKLISMARELEKLRAEIANSEKR  232 (300)
Q Consensus       204 Q~qaMeknlisMarEvekLRael~n~ekR  232 (300)
                      +.+.+++.+..+.+|+++++++|...+.+
T Consensus       552 ~~~~~~~~~~~l~~e~~~~~~~~~~l~~~  580 (597)
T 3oja_B          552 QLDNKRAKQAELRQETSLKRQKVKQLEAK  580 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566667777777777777655544

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=94.50  E-value=0.89  Score=49.28  Aligned_cols=20  Identities=5%  Similarity=0.074  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 038916          172 ALKAEIENVKQELQRARAAI  191 (300)
Q Consensus       172 al~aEl~~lRqEl~r~R~a~  191 (300)
                      .|...+..|.+|.+.+++++
T Consensus      1020 ~L~~kv~~L~~e~~~L~qq~ 1039 (1080)
T 2dfs_A         1020 ETEQLVSELKEQNTLLKTEK 1039 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33344445555555544443

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=94.25  E-value=0.27  Score=42.84  Aligned_cols=50  Identities=14%  Similarity=0.205  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 038916          173 LKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANS  229 (300)
Q Consensus       173 l~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~  229 (300)
                      ++.+|.+.|+||+....+       ..-|-..+.++-++|..+..++...|.++.++
T Consensus        90 Lr~ql~akr~EL~aL~~a-------~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~e  139 (175)
T 3lay_A           90 LRQQLISKRYEYNALLTA-------SSPDTAKINAVAKEMESLGQKLDEQRVKRDVA  139 (175)
T ss_dssp             HHHHHHHHHHHHHHHHTS-------SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555544333       23344556666666777777777777666544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.67  E-value=0.62  Score=45.62  Aligned_cols=52  Identities=19%  Similarity=0.227  Sum_probs=25.9

Q ss_pred             HHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038916          182 QELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRA  233 (300)
Q Consensus       182 qEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~  233 (300)
                      .++++..+.++..++.+...=+++..||+.+..+.+.++.++.|+++.++..
T Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~  574 (597)
T 3oja_B          523 RETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV  574 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            3333434444333333333334445666666666666666666665554433

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=93.28  E-value=2.8  Score=36.49  Aligned_cols=54  Identities=13%  Similarity=0.258  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 038916          171 PALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRA  224 (300)
Q Consensus       171 ~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRa  224 (300)
                      ..|....+.|.+|+....++++.|+....---+=+..|+-.+.++..|+++++.
T Consensus        58 ~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~  111 (168)
T 3o0z_A           58 RILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKH  111 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444433332222233333344444444444443

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=92.33  E-value=1.5  Score=44.38  Aligned_cols=73  Identities=7%  Similarity=0.162  Sum_probs=45.6

Q ss_pred             hhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHH-HHHHHHHHHHHHHHHhH-hhcccHHHHHHHHHHHHHHHHHHHHhh
Q 038916          117 MDKDVQMREMYDKSVQLEVDLRGVEAMRSELL-KVQADIKELTAVRQELT-DLQQVPALKAEIENVKQELQRARAAIE  192 (300)
Q Consensus       117 ~e~Elq~r~l~~k~~K~EaElra~e~lr~El~-ql~aE~q~L~a~RqEL~-d~qQv~al~aEl~~lRqEl~r~R~a~e  192 (300)
                      .+.+..++.+++...+=-.....++..+.|+. .|+-   .+..++.+|. .+++|.+|+.-|++++.|||++-..|+
T Consensus        81 Kdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRR---rIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId  155 (562)
T 3ghg_A           81 KDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRS---RIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID  155 (562)
T ss_dssp             HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666655444444444555666555 5554   4445555665 357788888888888888888776664

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=90.56  E-value=5.7  Score=47.86  Aligned_cols=27  Identities=22%  Similarity=0.364  Sum_probs=12.4

Q ss_pred             HHHHhHHhhhhhH---HHHHHHHHHHHHHH
Q 038916          129 KSVQLEVDLRGVE---AMRSELLKVQADIK  155 (300)
Q Consensus       129 k~~K~EaElra~e---~lr~El~ql~aE~q  155 (300)
                      +....|+||.+.+   ++|+++.++++++.
T Consensus      1995 ~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~ 2024 (3245)
T 3vkg_A         1995 QKVKAYADLEKAEPTGPLREEVEQLENAAN 2024 (3245)
T ss_dssp             HHHHHHHCC-------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Confidence            3334455555443   45666666666433

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=90.30  E-value=2  Score=33.19  Aligned_cols=50  Identities=22%  Similarity=0.345  Sum_probs=36.2

Q ss_pred             HHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHH
Q 038916          130 SVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVK  181 (300)
Q Consensus       130 ~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lR  181 (300)
                      -.|.|.|+.....+-.++.-++-++..+...|.+|.  .+|..|..||.-|+
T Consensus        34 k~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE--~kvesL~eEl~fLk   83 (86)
T 3swk_A           34 REKLQEEMLQREEAENTLQSFRQDVDNASLARLDLE--RKVESLQEEIAFLK   83 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH--HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHh
Confidence            347788887667788888899999999999999982  34555555555443

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=89.63  E-value=2.3  Score=34.79  Aligned_cols=84  Identities=18%  Similarity=0.234  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHh---------hcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHH
Q 038916          141 EAMRSELLKVQADIKELTAVRQELTD---------LQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKK  211 (300)
Q Consensus       141 e~lr~El~ql~aE~q~L~a~RqEL~d---------~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMekn  211 (300)
                      +.|-.++.+++-++-++...|+||++         ..||..|..-+.+..+.|.-.+.+|.+=+.   +--+|+..+-..
T Consensus         9 ~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~---~vq~qL~~Lt~~   85 (112)
T 1x79_B            9 KKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKR---DVQEQMAVLMQS   85 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            44555566777777777778888872         577899999999999999999999988773   334456666666


Q ss_pred             HHHHHHHHHHHHHHHH
Q 038916          212 LISMARELEKLRAEIA  227 (300)
Q Consensus       212 lisMarEvekLRael~  227 (300)
                      -..+..|+.+|-.+=+
T Consensus        86 Re~V~~eL~rLQ~eNd  101 (112)
T 1x79_B           86 REQVSEELVRLQKDND  101 (112)
T ss_dssp             HHHHHTC---------
T ss_pred             HHHHHHHHHHHHhhcc
Confidence            6666666666655533

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=88.79  E-value=1.5  Score=38.24  Aligned_cols=52  Identities=21%  Similarity=0.360  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhh
Q 038916          141 EAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFD  194 (300)
Q Consensus       141 e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~E  194 (300)
                      .++++++...+.|++.|...  +=.|..+|.++..||..+|+++...|..+..+
T Consensus        88 ~~Lr~ql~akr~EL~aL~~a--~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~e  139 (175)
T 3lay_A           88 SALRQQLISKRYEYNALLTA--SSPDTAKINAVAKEMESLGQKLDEQRVKRDVA  139 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHTS--SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555443321  11166789999999999999888877665544

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=87.85  E-value=12  Score=32.97  Aligned_cols=39  Identities=38%  Similarity=0.400  Sum_probs=21.5

Q ss_pred             HHHHHHHhHHHHHhhhhhccchhhhHHHHHHHHHHHHHH
Q 038916           66 IEEHLAAQHQDIQGLLADNQRLAATHVALKQELEVAQYE  104 (300)
Q Consensus        66 lEe~la~Q~~Ei~~L~~dNqRLa~~h~aLrqeLaa~~~E  104 (300)
                      ||..|..-..-+..|-..|.+|-.....++..+..++.|
T Consensus        47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e   85 (189)
T 2v71_A           47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ   85 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444445555566666666666665555555555

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=87.58  E-value=7.5  Score=34.30  Aligned_cols=53  Identities=23%  Similarity=0.328  Sum_probs=22.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 038916          169 QVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKLISMARELEKLRA  224 (300)
Q Consensus       169 Qv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknlisMarEvekLRa  224 (300)
                      ++..|...+..+..|+...+.-+..-+   .+...++-.++++|..+..+.+.|+.
T Consensus        57 ~~~~L~~~~~~L~~E~e~~k~K~~~~~---~e~~~~~~~Lq~el~~l~~~~~~l~~  109 (189)
T 2v71_A           57 RNRDLQADNQRLKYEVEALKEKLEHQY---AQSYKQVSVLEDDLSQTRAIKEQLHK  109 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444455555555444443322   22223344444444444444444433

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=86.91  E-value=1.8  Score=35.64  Aligned_cols=42  Identities=12%  Similarity=0.180  Sum_probs=27.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHH
Q 038916          101 AQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEA  142 (300)
Q Consensus       101 ~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~  142 (300)
                      .++||.+|...+.+++.|.--.+..|..++..||+|+-.-+.
T Consensus        20 Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~   61 (120)
T 3i00_A           20 LYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQH   61 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555677666677788888888888774443

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=85.87  E-value=8.8  Score=31.14  Aligned_cols=12  Identities=25%  Similarity=0.312  Sum_probs=4.2

Q ss_pred             HHHHHHHHHHHH
Q 038916           98 LEVAQYELQRMV  109 (300)
Q Consensus        98 Laa~~~Elq~L~  109 (300)
                      |..++.||..|.
T Consensus        31 l~~~k~Ei~elr   42 (129)
T 3tnu_B           31 LRNTKHEISEMN   42 (129)
T ss_dssp             ---CHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            334444444444

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=85.84  E-value=2.9  Score=32.37  Aligned_cols=28  Identities=14%  Similarity=0.315  Sum_probs=23.3

Q ss_pred             HhHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 038916          132 QLEVDLRGVEAMRSELLKVQADIKELTA  159 (300)
Q Consensus       132 K~EaElra~e~lr~El~ql~aE~q~L~a  159 (300)
                      -+|+||++=..+.+||.+++++...+..
T Consensus        18 ALeaEIqAKQ~i~EELs~vr~~ni~~es   45 (81)
T 1wt6_A           18 ALEEEVLTRQSLSREMEAIRTDNQNFAS   45 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5788999888899999998888777765

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=85.31  E-value=12  Score=29.32  Aligned_cols=84  Identities=18%  Similarity=0.305  Sum_probs=44.6

Q ss_pred             HhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHH---HHHHHHHHHhhhhhhchhhhhhhhHHH
Q 038916          132 QLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVK---QELQRARAAIEFDKKGYAENYEHGQVM  208 (300)
Q Consensus       132 K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lR---qEl~r~R~a~e~Ekk~~~e~~eQ~qaM  208 (300)
                      .++++++   .++.+=..+-.++..|..-+.+|.  ..|.++.+|...+.   .++.+-+..|....   .+...+..++
T Consensus         8 ~l~~eL~---~l~~eE~~L~~eL~~lEke~~~l~--~el~~le~E~~~L~~eE~~~w~eyn~~~~ql---~e~~dE~~Sl   79 (96)
T 3q8t_A            8 QLQRELK---ELALEEERLIQELEDVEKNRKVVA--ENLEKVQAEAERLDQEEAQYQREYSEFKRQQ---LELDDELKSV   79 (96)
T ss_dssp             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            3444444   455555566666777777777663  23334444444332   23344444444444   4445555666


Q ss_pred             HHHHHHHHHHHHHHH
Q 038916          209 EKKLISMARELEKLR  223 (300)
Q Consensus       209 eknlisMarEvekLR  223 (300)
                      +..|..-..-++||+
T Consensus        80 ~~q~~~~~~qLdkL~   94 (96)
T 3q8t_A           80 ENQMRYAQMQLDKLK   94 (96)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh
Confidence            666666666666665

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=84.59  E-value=8.5  Score=31.37  Aligned_cols=18  Identities=17%  Similarity=0.231  Sum_probs=7.6

Q ss_pred             HHHHHHHhhhhhhchhhh
Q 038916          184 LQRARAAIEFDKKGYAEN  201 (300)
Q Consensus       184 l~r~R~a~e~Ekk~~~e~  201 (300)
                      |.....+++.|-.+|...
T Consensus       110 Ll~vKl~Ld~EIatYRkL  127 (131)
T 3tnu_A          110 LLDVKTRLEQEIATYRRL  127 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            333344444444444433

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=84.18  E-value=3.8  Score=33.61  Aligned_cols=11  Identities=18%  Similarity=0.277  Sum_probs=4.1

Q ss_pred             HHHHHHHHHHH
Q 038916          142 AMRSELLKVQA  152 (300)
Q Consensus       142 ~lr~El~ql~a  152 (300)
                      .|+.|+..++.
T Consensus        19 ~Lkreie~lk~   29 (120)
T 3i00_A           19 RLYREISGLKA   29 (120)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=82.64  E-value=22  Score=30.42  Aligned_cols=85  Identities=22%  Similarity=0.332  Sum_probs=43.2

Q ss_pred             HHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhh
Q 038916          126 MYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHG  205 (300)
Q Consensus       126 l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~  205 (300)
                      .+++..-+|-+|.   .+|.++.....-++.|...|.++.   +   +..++.....|+.+....+.-|++...      
T Consensus        11 Ain~qs~LeD~L~---~~R~el~~~~~ri~~lE~~r~~~~---~---l~~~~~~~~~e~~~L~~~l~~E~~~R~------   75 (154)
T 2ocy_A           11 SVDKQSHLEEQLN---KSLKTIASQKAAIENYNQLKEDYN---T---LKRELSDRDDEVKRLREDIAKENELRT------   75 (154)
T ss_dssp             HHHHHHHHHHHHH---HHHHHHHHHHHHHHTTHHHHHHHH---H---HHTHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred             HHHhhccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHhhhhHHHHHHHHHHHHHHHHHH------
Confidence            3444455554443   455666666666666666666662   2   223344455555555555555543332      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 038916          206 QVMEKKLISMARELEKLRAEI  226 (300)
Q Consensus       206 qaMeknlisMarEvekLRael  226 (300)
                       ..|+....+.+|||-|=|.|
T Consensus        76 -~aE~~~~~ie~ElEeLTasL   95 (154)
T 2ocy_A           76 -KAEEEADKLNKEVEDLTASL   95 (154)
T ss_dssp             -HHHTHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHH
Confidence             34444444445555554443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=82.24  E-value=20  Score=29.72  Aligned_cols=80  Identities=18%  Similarity=0.191  Sum_probs=44.7

Q ss_pred             HHHHHHH--HHHHHhHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhh
Q 038916          121 VQMREMY--DKSVQLEVDLRGVE---AMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDK  195 (300)
Q Consensus       121 lq~r~l~--~k~~K~EaElra~e---~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ek  195 (300)
                      -+|+++.  +..-.+-.+--++=   .+-+|+.+++.++..|..         ++..+..||..+++||....-.++.-+
T Consensus        39 ~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~---------~l~~~~kE~~~lK~el~~~~~k~e~~~  109 (138)
T 3hnw_A           39 NKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSL---------DIENKDKEIYDLKHELIAAQIKAESSA  109 (138)
T ss_dssp             HHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555  22555554444442   266777777776665542         334457788888888888666665554


Q ss_pred             hchhhhhhhhHHHH
Q 038916          196 KGYAENYEHGQVME  209 (300)
Q Consensus       196 k~~~e~~eQ~qaMe  209 (300)
                      +...+..+....++
T Consensus       110 ~e~~~l~~~~~~l~  123 (138)
T 3hnw_A          110 KEIKELKSEINKYQ  123 (138)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            44333333333333

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=81.70  E-value=11  Score=29.07  Aligned_cols=44  Identities=16%  Similarity=0.068  Sum_probs=34.5

Q ss_pred             hhhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 038916          193 FDKKGYAENYEHGQVMEKKLISMARELEKLRAEIANSEKRARAA  236 (300)
Q Consensus       193 ~Ekk~~~e~~eQ~qaMeknlisMarEvekLRael~n~ekR~ra~  236 (300)
                      --|-.|....++.+....+-..+.+|.++|+.|..+-+.|.++-
T Consensus        31 ELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L   74 (81)
T 2jee_A           31 ELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445556666677778888889999999999999988898874

>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1

Probab=81.34  E-value=14  Score=30.99  Aligned_cols=105  Identities=11%  Similarity=0.186  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhch--
Q 038916          121 VQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKELTAVRQELTDLQQVPALKAEIENVKQELQRARAAIEFDKKGY--  198 (300)
Q Consensus       121 lq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L~a~RqEL~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~--  198 (300)
                      --+...++++-.+..+|..++..-++|.+++..+-.  +...+=.-.+++..+..++..+-..+...-..++.+.+..  
T Consensus        36 ~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~--~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~  113 (180)
T 1s94_A           36 GFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILS--APQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEH  113 (180)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            334556666666666666666655566555554221  1110000112344444444444444444444444332211  


Q ss_pred             -----h---hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038916          199 -----A---ENYEHGQVMEKKLISMARELEKLRAEIA  227 (300)
Q Consensus       199 -----~---e~~eQ~qaMeknlisMarEvekLRael~  227 (300)
                           .   -.--|..++.+.|..+-.+.++++..+.
T Consensus       114 ~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~  150 (180)
T 1s94_A          114 SNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYR  150 (180)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 0   1123677888999999999988877654

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C

Probab=80.44  E-value=18  Score=28.01  Aligned_cols=86  Identities=12%  Similarity=0.163  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHH--H-HHHHHhHhhc
Q 038916           92 VALKQELEVAQYELQRMVHYADSFRMDKDVQMREMYDKSVQLEVDLRGVEAMRSELLKVQADIKEL--T-AVRQELTDLQ  168 (300)
Q Consensus        92 ~aLrqeLaa~~~Elq~L~~~i~~~r~e~Elq~r~l~~k~~K~EaElra~e~lr~El~ql~aE~q~L--~-a~RqEL~d~q  168 (300)
                      ...+++......+|......+.++-.+      .-...+..+|..   ++...+=|.||+.|++.+  . +.|..+  +.
T Consensus         4 ~~YE~df~~~~~~i~~~l~~~~~~~ge------~Rk~~i~~ie~~---ldEA~ell~qMelE~~~~~~p~~~R~~~--~~   72 (97)
T 3onj_A            4 ISYESDFKTTLEQAKASLAEAPSQPLS------QRNTTLKHVEQQ---QDELFDLLDQMDVEVNNSIGDASERATY--KA   72 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGSCHH------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHH--HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChH------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCCHHHHHHH--HH
Confidence            345777778888887776555544332      112223344533   455556688999999999  4 468887  56


Q ss_pred             ccHHHHHHHHH-HHHHHHHHH
Q 038916          169 QVPALKAEIEN-VKQELQRAR  188 (300)
Q Consensus       169 Qv~al~aEl~~-lRqEl~r~R  188 (300)
                      +|+.-+++|+. ++.|+..+.
T Consensus        73 klr~Yk~dl~~~lk~~lk~l~   93 (97)
T 3onj_A           73 KLREWKKTIQSDIKRPLQSLV   93 (97)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            89999999999 999998764

>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*

Probab=80.05  E-value=18  Score=28.32  Aligned_cols=25  Identities=8%  Similarity=0.270  Sum_probs=18.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHH
Q 038916          202 YEHGQVMEKKLISMARELEKLRAEI  226 (300)
Q Consensus       202 ~eQ~qaMeknlisMarEvekLRael  226 (300)
                      --|..++.+.|..+-.+.+..-.++
T Consensus        94 ~~q~~~L~~kf~e~m~~y~~~q~~y  118 (127)
T 1ez3_A           94 KTQHSTLSRKFVEVMSEYNATQSDY  118 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888888888888754443

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=80.05  E-value=22  Score=28.80  Aligned_cols=20  Identities=10%  Similarity=0.242  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhH
Q 038916          146 ELLKVQADIKELTAVRQELT  165 (300)
Q Consensus       146 El~ql~aE~q~L~a~RqEL~  165 (300)
                      ++.+++.|+.....--|+|.
T Consensus        92 eL~~~r~em~~ql~EYq~Ll  111 (131)
T 3tnu_A           92 QLAQLRCEMEQQNQEYKILL  111 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33355555555444445553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	300
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	84.38

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=84.38  E-value=3.5  Score=37.21  Aligned_cols=71  Identities=17%  Similarity=0.316  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-HhhcccHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhHHHHHHH
Q 038916          141 EAMRSELLKVQADIKELTAVRQEL-TDLQQVPALKAEIENVKQELQRARAAIEFDKKGYAENYEHGQVMEKKL  212 (300)
Q Consensus       141 e~lr~El~ql~aE~q~L~a~RqEL-~d~qQv~al~aEl~~lRqEl~r~R~a~e~Ekk~~~e~~eQ~qaMeknl  212 (300)
                      ..+..++..++.+..+|...-+.. ..+.++..++++|+.++.++..+....++++... -.+.-++.+++++
T Consensus       285 ~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~le~A~r~gd~e~Aae-L~y~~ip~le~el  356 (387)
T d1qvra2         285 KAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAE-LRYGELPKLEAEV  356 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHH-HHTTHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH-HhhchHHHHHHHH
Confidence            334444444444444433322211 1336677888888888888877766666666322 1233344555544