Citrus Sinensis ID: 038936
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 476 | 2.2.26 [Sep-21-2011] | |||||||
| O23169 | 691 | Pentatricopeptide repeat- | yes | no | 1.0 | 0.688 | 0.651 | 0.0 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.947 | 0.573 | 0.398 | 1e-100 | |
| Q9SKQ4 | 597 | Pentatricopeptide repeat- | no | no | 0.936 | 0.747 | 0.375 | 1e-97 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.943 | 0.574 | 0.376 | 2e-96 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.949 | 0.609 | 0.378 | 5e-94 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.947 | 0.630 | 0.380 | 1e-92 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.930 | 0.596 | 0.373 | 5e-92 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.867 | 0.592 | 0.367 | 3e-91 | |
| Q8S9M4 | 650 | Pentatricopeptide repeat- | no | no | 0.997 | 0.730 | 0.358 | 9e-91 | |
| Q9LIQ7 | 633 | Pentatricopeptide repeat- | no | no | 0.871 | 0.655 | 0.372 | 2e-90 |
| >sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/476 (65%), Positives = 395/476 (82%)
Query: 1 AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
AID+LC Q+ L+EA+Q+L + P S Y +LIQ C Q RALEEGKKVH H+++SGF PG
Sbjct: 60 AIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPG 119
Query: 61 VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
+ I N LL MYAKCG++ DA+ +FDEM RD+CS+N M++G+ + G LE+AR LFDEM +
Sbjct: 120 IVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTE 179
Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
+D++SWTAM++GYV+ +QP EAL LY +MQ NS N FT+S ++A +A++C+R GKE
Sbjct: 180 KDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKE 239
Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
IHG+I+R G DSDEV+WS+L DMYGKCG I+EAR IFDK+V++DVVSWT+MI RYF+ R
Sbjct: 240 IHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSR 299
Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
EGF+LFSEL+ S RPN +TFAGVLNACAD EELGKQVHGYMTR+G+DPYSFA+S+
Sbjct: 300 WREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSS 359
Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
LV MY+KCGN+E++K V +G P+PDLVSWTSLI G AQNG PD+AL+YF+LLLKSGT+PD
Sbjct: 360 LVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPD 419
Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
H+ FV VL+ACTHAGLV+KGL++F+SI EKH L++T+DHY C+VDLLARSGRF + + VI
Sbjct: 420 HVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVI 479
Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
S+MPMKP KFLWAS+LGGC +GN+DLA+ AA+ LF+IEPENP TYVTMANIYA+A
Sbjct: 480 SEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAA 535
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/487 (39%), Positives = 287/487 (58%), Gaps = 36/487 (7%)
Query: 24 PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
P+ ++++ R +E GKKVHS + G + V +SN LL+MYAKCG+ A+ +
Sbjct: 144 PTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFV 203
Query: 84 FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
FD M RD+ S+N MI+ + G ++ A F++M +RD +W +MISG+ + + AL
Sbjct: 204 FDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRAL 263
Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
D++ M ++FTL+SVLSA + ++ L +GK+IH +I+ TGFD +V +AL M
Sbjct: 264 DIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISM 323
Query: 204 YGKCGSI---------------------------------NEARQIFDKMVDRDVVSWTA 230
Y +CG + N+A+ IF + DRDVV+WTA
Sbjct: 324 YSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTA 383
Query: 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290
MI Y Q G E LF ++ G RPN++T A +L+ + A+ GKQ+HG + G
Sbjct: 384 MIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSG 443
Query: 291 YDPYSFAAS-ALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEY 348
+ YS + S AL+ MY+K GN+ ++ + F+ + D VSWTS+I AQ+G ++ALE
Sbjct: 444 -EIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALEL 502
Query: 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408
FE +L G +PDHI +VGV +ACTHAGLV++G QYF +K+ + T HYAC+VDL
Sbjct: 503 FETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFG 562
Query: 409 RSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468
R+G EA++ I KMP++PD W SLL CR+H N+DL K AAE L +EPEN Y
Sbjct: 563 RAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSA 622
Query: 469 MANIYAS 475
+AN+Y++
Sbjct: 623 LANLYSA 629
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 357 bits (915), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 284/480 (59%), Gaps = 34/480 (7%)
Query: 28 IYSSLIQFCRQNRALEEGKKVHSHLKSSGFK-PGVFISNCLLDMYAKCGNISDAQTLFDE 86
+ +SL+Q C ++L++GK +H HLK +GFK P +SN L+ MY KCG DA +FD+
Sbjct: 48 LLASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQ 107
Query: 87 MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY 146
M R++ S+N M+SG+ K G L +AR +FD MP+RD SW M+ GY + EAL Y
Sbjct: 108 MHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFY 167
Query: 147 RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK 206
+ + N+F+ + +L+A + L+L ++ HG ++ GF S+ V+ ++ D Y K
Sbjct: 168 KEFRR-SGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAK 226
Query: 207 CGSINEARQIFDKMVDRDV-------------------------------VSWTAMIGRY 235
CG + A++ FD+M +D+ VSWTA+I Y
Sbjct: 227 CGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGY 286
Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
++G LF ++I G++P FTF+ L A A A+ GK++HGYM R P +
Sbjct: 287 VRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNA 346
Query: 296 FAASALVHMYSKCGNVENSKKVFNGMP-RPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
S+L+ MYSK G++E S++VF + D V W ++I+ AQ+G+ KAL + ++K
Sbjct: 347 IVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIK 406
Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
QP+ V +L AC+H+GLV++GL++F S+ +HG+ +HYAC++DLL R+G F
Sbjct: 407 FRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFK 466
Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
E I +MP +PDK +W ++LG CRIHGN +L K+AA+ L +++PE+ A Y+ +++IYA
Sbjct: 467 ELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYA 526
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (906), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 177/470 (37%), Positives = 279/470 (59%), Gaps = 21/470 (4%)
Query: 11 LKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM 70
+ +A + ++ + +++L+ QN +EE L S + NCLL
Sbjct: 173 VDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEA----CMLFKSRENWALVSWNCLLGG 228
Query: 71 YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130
+ K I +A+ FD M RDV S+NT+I+G+ + G +++AR LFDE P +D F+WTAM+
Sbjct: 229 FVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMV 288
Query: 131 SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190
SGY++ EA +L+ M N+ + +++L+ + + + KE+ F
Sbjct: 289 SGYIQNRMVEEARELFDKMPE-----RNEVSWNAMLAGYVQGERMEMAKEL--------F 335
Query: 191 D----SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246
D + W+ + Y +CG I+EA+ +FDKM RD VSW AMI Y Q G E
Sbjct: 336 DVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALR 395
Query: 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306
LF ++ + G R N +F+ L+ CAD A ELGKQ+HG + + GY+ F +AL+ MY
Sbjct: 396 LFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYC 455
Query: 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVG 366
KCG++E + +F M D+VSW ++IAGY+++G + AL +FE + + G +PD V
Sbjct: 456 KCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVA 515
Query: 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK 426
VL+AC+H GLVDKG QYF+++ + +G+ + HYAC+VDLL R+G +A +++ MP +
Sbjct: 516 VLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFE 575
Query: 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
PD +W +LLG R+HGN +LA+ AA+ +F +EPEN YV ++N+YAS+
Sbjct: 576 PDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASS 625
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 345 bits (885), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 172/455 (37%), Positives = 280/455 (61%), Gaps = 3/455 (0%)
Query: 24 PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
P+ + +++ C +++A +EG+++H H+ G +++ L+ MY + G + DA +
Sbjct: 132 PNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKV 191
Query: 84 FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
FD+ RDV SY +I G+ G +E A+ LFDE+P +D SW AMISGY EAL
Sbjct: 192 FDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEAL 251
Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
+L++ M N ++ T+ +V+SA + + LG+++H +I GF S+ + +AL D+
Sbjct: 252 ELFKDMMK-TNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDL 310
Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
Y KCG + A +F+++ +DV+SW +IG Y +E LF E+++SG PN T
Sbjct: 311 YSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 370
Query: 264 AGVLNACADHAAEELGKQVHGYMTR--IGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
+L ACA A ++G+ +H Y+ + G S ++L+ MY+KCG++E + +VFN +
Sbjct: 371 LSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI 430
Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
L SW ++I G+A +G D + + F + K G QPD I FVG+L+AC+H+G++D G
Sbjct: 431 LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGR 490
Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
F ++ + + +T +HY C++DLL SG F EAE++I+ M M+PD +W SLL C++
Sbjct: 491 HIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKM 550
Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
HGN++L + AE L +IEPENP +YV ++NIYASA
Sbjct: 551 HGNVELGESFAENLIKIEPENPGSYVLLSNIYASA 585
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 340 bits (873), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 174/457 (38%), Positives = 272/457 (59%), Gaps = 6/457 (1%)
Query: 24 PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKC---GNISDA 80
P +++ S+++ C L G+ VH + G ++ N L++MYAK G+
Sbjct: 103 PDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISV 162
Query: 81 QTLFDEMQERDVCSYNTMISGFT--KGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138
+FDEM +R S + + T ++ R +F+ MP++D S+ +I+GY +
Sbjct: 163 GNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGM 222
Query: 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS 198
+AL + R M + + FTLSSVL S + GKEIHGY++R G DSD + S
Sbjct: 223 YEDALRMVREMGTTDLK-PDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGS 281
Query: 199 ALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258
+L DMY K I ++ ++F ++ RD +SW +++ Y Q GR E LF +++ + ++P
Sbjct: 282 SLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKP 341
Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318
A F+ V+ ACA A LGKQ+HGY+ R G+ F ASALV MYSKCGN++ ++K+F
Sbjct: 342 GAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIF 401
Query: 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378
+ M D VSWT++I G+A +G +A+ FE + + G +P+ + FV VLTAC+H GLVD
Sbjct: 402 DRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVD 461
Query: 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438
+ YF+S+ + +GL +HYA + DLL R+G+ EA + ISKM ++P +W++LL
Sbjct: 462 EAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSS 521
Query: 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475
C +H NL+LA++ AE +F ++ EN YV M N+YAS
Sbjct: 522 CSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYAS 558
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 338 bits (867), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 166/445 (37%), Positives = 270/445 (60%), Gaps = 2/445 (0%)
Query: 31 SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
++++ N + GK++H + GF+ + + + LL MYA G ISDA+ +F + +R
Sbjct: 144 TMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDR 203
Query: 91 DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
+ YN+++ G G +E A LF M ++D+ SW AMI G + EA++ +R M+
Sbjct: 204 NTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMK 262
Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
+ +++ SVL A + + GK+IH I+RT F V SAL DMY KC +
Sbjct: 263 -VQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCL 321
Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
+ A+ +FD+M ++VVSWTAM+ Y Q GR EE +F ++ +SGI P+ +T ++AC
Sbjct: 322 HYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISAC 381
Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
A+ ++ E G Q HG G Y +++LV +Y KCG++++S ++FN M D VSWT
Sbjct: 382 ANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWT 441
Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
++++ YAQ G + ++ F+ +++ G +PD + GV++AC+ AGLV+KG +YF + +
Sbjct: 442 AMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSE 501
Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
+G+ + HY+C++DL +RSGR EA I+ MP PD W +LL CR GNL++ K
Sbjct: 502 YGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKW 561
Query: 451 AAEALFEIEPENPATYVTMANIYAS 475
AAE+L E++P +PA Y +++IYAS
Sbjct: 562 AAESLIELDPHHPAGYTLLSSIYAS 586
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 335 bits (860), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 178/485 (36%), Positives = 268/485 (55%), Gaps = 72/485 (14%)
Query: 29 YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
++S++ C + +G +VHS + S F V+I + L+DMY+KCGN++DA
Sbjct: 155 FASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDA-------- 206
Query: 89 ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
+ +FDEM R+ SW ++I+ + + +EALD+++M
Sbjct: 207 -----------------------QRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQM 243
Query: 149 MQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG-FDSDEVVWSALSDMYGK 206
M E+ V ++ TL+SV+SA +++ +++G+E+HG +++ +D ++ +A DMY K
Sbjct: 244 M--LESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAK 301
Query: 207 CGSINEARQIFD-------------------------------KMVDRDVVSWTAMIGRY 235
C I EAR IFD KM +R+VVSW A+I Y
Sbjct: 302 CSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGY 361
Query: 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295
Q G EE +LF L + + P ++FA +L ACAD A LG Q H ++ + G+ S
Sbjct: 362 TQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQS 421
Query: 296 ------FAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349
F ++L+ MY KCG VE VF M D VSW ++I G+AQNG ++ALE F
Sbjct: 422 GEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELF 481
Query: 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409
+L+SG +PDHI +GVL+AC HAG V++G YF S+ G+ DHY C+VDLL R
Sbjct: 482 REMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGR 541
Query: 410 SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469
+G EA+ +I +MPM+PD +W SLL C++H N+ L K AE L E+EP N YV +
Sbjct: 542 AGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLL 601
Query: 470 ANIYA 474
+N+YA
Sbjct: 602 SNMYA 606
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080 OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 334 bits (856), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 171/477 (35%), Positives = 276/477 (57%), Gaps = 2/477 (0%)
Query: 1 AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
AI LC++ L+EA Q + S+++ IQ C ++L GK++H L SGF
Sbjct: 19 AIATLCSKGNLREAFQRFRLNIFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSD 78
Query: 61 VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
FI N L+ MY+K G+ A ++ M++++ S N +I+G+ + G L AR +FDEMP
Sbjct: 79 KFICNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPD 138
Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
R +W AMI+G +++ E L L+R M S +++TL SV S + ++ + +G++
Sbjct: 139 RKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFS-PDEYTLGSVFSGSAGLRSVSIGQQ 197
Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
IHGY ++ G + D VV S+L+ MY + G + + + M R++V+W +I Q G
Sbjct: 198 IHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGC 257
Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
E L+ + SG RPN TF VL++C+D A G+Q+H +IG S+
Sbjct: 258 PETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSS 317
Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLL-KSGTQP 359
L+ MYSKCG + ++ K F+ D V W+S+I+ Y +G D+A+E F + ++ +
Sbjct: 318 LISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEI 377
Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
+ + F+ +L AC+H+GL DKGL+ F + EK+G HY C+VDLL R+G +AE +
Sbjct: 378 NEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAI 437
Query: 420 ISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
I MP+K D +W +LL C IH N ++A+R + + +I+P + A YV +AN++ASA
Sbjct: 438 IRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASA 494
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (854), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 167/448 (37%), Positives = 272/448 (60%), Gaps = 33/448 (7%)
Query: 29 YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
Y++L++ C + L +G+ VH+H+ S F+ + + N LL+MYAKC
Sbjct: 63 YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKC-------------- 108
Query: 89 ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
GSLE+AR +F++MPQRD +WT +ISGY ++++P +AL +
Sbjct: 109 -----------------GSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQ 151
Query: 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
M F S N+FTLSSV+ A +A + G ++HG+ ++ GFDS+ V SAL D+Y + G
Sbjct: 152 MLRFGYS-PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYG 210
Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
+++A+ +FD + R+ VSW A+I + + E+ LF +++ G RP+ F++A +
Sbjct: 211 LMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFG 270
Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
AC+ E GK VH YM + G +FA + L+ MY+K G++ +++K+F+ + + D+VS
Sbjct: 271 ACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS 330
Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
W SL+ YAQ+G +A+ +FE + + G +P+ I F+ VLTAC+H+GL+D+G Y+ +K
Sbjct: 331 WNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMK 390
Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
K G+ A HY +VDLL R+G + A I +MP++P +W +LL CR+H N +L
Sbjct: 391 -KDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELG 449
Query: 449 KRAAEALFEIEPENPATYVTMANIYASA 476
AAE +FE++P++P +V + NIYAS
Sbjct: 450 AYAAEHVFELDPDDPGPHVILYNIYASG 477
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 476 | ||||||
| 224141479 | 676 | predicted protein [Populus trichocarpa] | 1.0 | 0.704 | 0.75 | 0.0 | |
| 359480463 | 621 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.766 | 0.756 | 0.0 | |
| 356547226 | 693 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.686 | 0.723 | 0.0 | |
| 357481283 | 802 | Pentatricopeptide repeat-containing prot | 0.997 | 0.592 | 0.690 | 0.0 | |
| 449469198 | 724 | PREDICTED: pentatricopeptide repeat-cont | 0.997 | 0.656 | 0.695 | 0.0 | |
| 297802258 | 693 | pentatricopeptide repeat-containing prot | 1.0 | 0.686 | 0.657 | 0.0 | |
| 15235472 | 691 | pentatricopeptide repeat-containing prot | 1.0 | 0.688 | 0.651 | 0.0 | |
| 255562657 | 507 | pentatricopeptide repeat-containing prot | 0.722 | 0.678 | 0.753 | 1e-176 | |
| 218192399 | 703 | hypothetical protein OsI_10663 [Oryza sa | 0.867 | 0.587 | 0.565 | 1e-138 | |
| 115451769 | 641 | Os03g0235200 [Oryza sativa Japonica Grou | 0.867 | 0.644 | 0.565 | 1e-137 |
| >gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa] gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/476 (75%), Positives = 426/476 (89%)
Query: 1 AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
AI ILC Q RLKEALQILHQI PS S+YS+LIQ C ++R L++GKKVH H+K SGF PG
Sbjct: 45 AIHILCQQNRLKEALQILHQIDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPG 104
Query: 61 VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
+FI N LL+MYAKC ++ D+Q LFDEM ERD+CS+N +ISG+ K G L++A++LFD+MP+
Sbjct: 105 LFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPE 164
Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
RDNFSWTAMISGYVR+++P EAL+L+RMM+ +NS SNKFT+SS L+A +A+ CLR+GKE
Sbjct: 165 RDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKE 224
Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
IHGYIMRTG DSDEVVWSALSDMYGKCGSI EAR IFDKMVDRD+V+WTAMI RYFQ+GR
Sbjct: 225 IHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGR 284
Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
R+EGF LF++L++SGIRPN FTF+GVLNACA+ +EELGK+VHGYMTR+G+DP+SFAASA
Sbjct: 285 RKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASA 344
Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
LVHMYSKCGN+ ++++VF P+PDL SWTSLIAGYAQNG PD+A+ YFELL+KSGTQPD
Sbjct: 345 LVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPD 404
Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
HI FVGVL+AC HAGLVDKGL YFHSIKE++GLT+TADHYACI+DLLARSG+F EAE++I
Sbjct: 405 HITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENII 464
Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
SKM MKPDKFLWASLLGGCRIHGNL LA+RAAEALFEIEPENPATYVT+ANIYA+A
Sbjct: 465 SKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATA 520
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37170-like, partial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/476 (75%), Positives = 417/476 (87%)
Query: 1 AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
AIDILC Q+RL+EA+QIL + PS + YS+L+Q C Q RAL+EG KVH+H K+SGF PG
Sbjct: 64 AIDILCEQKRLREAIQILDHVDRPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPG 123
Query: 61 VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
V ISN +LDMY KC ++ +A+ LFDEM ERD+CS+N MISG+ K G L++AR LFD+M +
Sbjct: 124 VVISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTE 183
Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
RDNFSWTAM SGYVR++Q EAL+L+R MQ EN NKFT+SS L+A +AIQ L LGKE
Sbjct: 184 RDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKE 243
Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
IHG+I+R G D D VVWSALSDMYGKCGSI EAR IFDK VDRDVVSWTAMI RYF+EGR
Sbjct: 244 IHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGR 303
Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
REEGFALFS+L+KSGI PN FTF+GVLNACADHAAEELGKQVHGYMTRIG+DP SFAAS
Sbjct: 304 REEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAAST 363
Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
LVHMY+KCGN++N+++VFNGMPRPDLVSWTSLI+GYAQNG PD+AL++FELLLKSGTQPD
Sbjct: 364 LVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPD 423
Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
HI FVGVL+ACTHAGLVDKGL+YF SIKEKHGLT+TADHYAC++DLL+RSGR EAED+I
Sbjct: 424 HITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDII 483
Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
KMP++PDKFLWASLLGGCRIHGNL LAKRAAEALFEIEPENPATY T+ANIYA+A
Sbjct: 484 DKMPIEPDKFLWASLLGGCRIHGNLKLAKRAAEALFEIEPENPATYTTLANIYATA 539
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37170-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/477 (72%), Positives = 411/477 (86%), Gaps = 1/477 (0%)
Query: 1 AIDILCNQRRLKEALQILHQISH-PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP 59
A+D+LC Q+R+KEA+++LH+ H PS +YS+LI C ++RALE G++VH+H K+S F P
Sbjct: 61 AVDVLCQQKRVKEAVELLHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVP 120
Query: 60 GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
GVFISN LLDMYAKCG++ DAQ LFDEM RD+CS+NTMI G+ K G LEQAR LFDEMP
Sbjct: 121 GVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMP 180
Query: 120 QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179
QRDNFSW A ISGYV +NQP EAL+L+R+MQ E S SNKFTLSS L+A +AI CLRLGK
Sbjct: 181 QRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGK 240
Query: 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEG 239
EIHGY++RT + DEVVWSAL D+YGKCGS++EAR IFD+M DRDVVSWT MI R F++G
Sbjct: 241 EIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDG 300
Query: 240 RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAAS 299
RREEGF LF +L++SG+RPN +TFAGVLNACADHAAE LGK+VHGYM GYDP SFA S
Sbjct: 301 RREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAIS 360
Query: 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
ALVHMYSKCGN +++VFN M +PDLVSWTSLI GYAQNG PD+AL +FELLL+SGT+P
Sbjct: 361 ALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKP 420
Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
D + +VGVL+ACTHAGLVDKGL+YFHSIKEKHGL +TADHYAC++DLLARSGRF EAE++
Sbjct: 421 DQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENI 480
Query: 420 ISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
I MP+KPDKFLWASLLGGCRIHGNL+LAKRAA+AL+EIEPENPATY+T+ANIYA+A
Sbjct: 481 IDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPATYITLANIYANA 537
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/475 (69%), Positives = 405/475 (85%)
Query: 2 IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
I++ C Q RLKEA+ LH+I PSP +YS+LI C ++R LE GK+VH+H K+S F PG+
Sbjct: 39 IELFCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGI 98
Query: 62 FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
ISN L+ MYAKCG++ DAQ LFDE+ ++D+CS+NTMISG+ G +EQAR LFDEMP R
Sbjct: 99 VISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHR 158
Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEI 181
DNFSW A+ISGYV +EALDL+RMMQ E+S N FTLSS L+A +AI LR GKEI
Sbjct: 159 DNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEI 218
Query: 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRR 241
HGY++R+G + DEVVW+AL D+YGKCGS+NEAR IFD+M D+D+VSWT MI R F++GR+
Sbjct: 219 HGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRK 278
Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
+EGF+LF +L+ SG+RPN +TFAGVLNACAD AAE++GK+VHGYMTR+GYDP+SFAASAL
Sbjct: 279 KEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASAL 338
Query: 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH 361
VH+YSKCGN E +++VFN MPRPDLVSWTSLI GYAQNG PD AL++FE LL+SGT+PD
Sbjct: 339 VHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDE 398
Query: 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421
I FVGVL+ACTHAGLVD GL+YFHS+KEKHGL +TADHYAC++DLLARSGRF EAE++I
Sbjct: 399 ITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIID 458
Query: 422 KMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
MPMKPDKFLWASLLGGCRIHGN++LA+RAA+ALFE+EPENPATY+T++NIYA+A
Sbjct: 459 NMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYANA 513
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37170-like [Cucumis sativus] gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37170-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/476 (69%), Positives = 405/476 (85%), Gaps = 1/476 (0%)
Query: 1 AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
AIDILC Q RL+EA+Q+L++I P SIY +L++FC + RAL+EGK+VH+H+K+SG G
Sbjct: 94 AIDILCGQSRLREAVQLLYRIEKPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSG-SIG 152
Query: 61 VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
++ISN LLDMYAKCG++ DA+ +FDEM RD+CS+N MISG+ KGG+ E+ARNLFD+MP
Sbjct: 153 LYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPN 212
Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
RDNFSWTA+ISG V++N+P EAL+LYR+MQ + S SNK T+SS L+A +AI L +GK+
Sbjct: 213 RDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKK 272
Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
IHG+IMR G DSDEVVW +L DMYGKCGSI EAR IFDKM +RDVVSWT MI Y + GR
Sbjct: 273 IHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGR 332
Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
REEGFALF L+ S I PN FTFAGVLNACAD AAE+LGKQ+H YM R+G+D +S AASA
Sbjct: 333 REEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASA 392
Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
LVHMYSKCG++EN+K VF +P+PDL SWTSL+ GYAQ+G DKAL +FELLLKSGT+PD
Sbjct: 393 LVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPD 452
Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
I F+GVL+AC HAGLVDKGL+YFHSIKEKHGLT T DHYACI+DLLAR+G+F EAE +I
Sbjct: 453 GIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESII 512
Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
++MP+KPDK++WA+LLGGCRIHGNL+LAKRAA++LFEIEPENPATYVT+ANIYASA
Sbjct: 513 NEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASA 568
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/476 (65%), Positives = 399/476 (83%)
Query: 1 AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
AID+LC Q+ L+EA+Q+L + P S Y +LIQ C Q RALEEGKKVH H+++SGF PG
Sbjct: 62 AIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPG 121
Query: 61 VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
+ I N +L MYAKCG++ DA+ +FDEM ERDVCS+N M++G+ + G LE+ARNLFDEMP+
Sbjct: 122 IVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPE 181
Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
RD++SWTAM++GYV+ +QP EAL LY +MQ NS N FT+SS ++A +AI+C+R GKE
Sbjct: 182 RDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKE 241
Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
IHG+I+R G DSDEV+WS+L DMYGKCG I+EAR IFDK++D+DVVSWT+MI RYF+ R
Sbjct: 242 IHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSR 301
Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
EGF+LFSELI S RPN +TF+GVLNACAD EELG+QVHGYMTR+G+DPYSFA+S+
Sbjct: 302 WREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSS 361
Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
L+ MY+KCGN+E+++ V +G P+PDLVS TSLI GYAQNG PD+AL+YF+LLLKSGT+PD
Sbjct: 362 LIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPD 421
Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
H+ FV VL+ACTHAGLV+KGL++F+SI EKH LT+T+DHY C+VDLLARSGRF + + V+
Sbjct: 422 HVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVL 481
Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
S+MPMKP KFLWAS+LGGC +GN+DLA+ AA+ LF+IEPENP TYVTMANIYA+A
Sbjct: 482 SEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAA 537
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana] gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana] gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/476 (65%), Positives = 395/476 (82%)
Query: 1 AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
AID+LC Q+ L+EA+Q+L + P S Y +LIQ C Q RALEEGKKVH H+++SGF PG
Sbjct: 60 AIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPG 119
Query: 61 VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
+ I N LL MYAKCG++ DA+ +FDEM RD+CS+N M++G+ + G LE+AR LFDEM +
Sbjct: 120 IVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTE 179
Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
+D++SWTAM++GYV+ +QP EAL LY +MQ NS N FT+S ++A +A++C+R GKE
Sbjct: 180 KDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKE 239
Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
IHG+I+R G DSDEV+WS+L DMYGKCG I+EAR IFDK+V++DVVSWT+MI RYF+ R
Sbjct: 240 IHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSR 299
Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
EGF+LFSEL+ S RPN +TFAGVLNACAD EELGKQVHGYMTR+G+DPYSFA+S+
Sbjct: 300 WREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSS 359
Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
LV MY+KCGN+E++K V +G P+PDLVSWTSLI G AQNG PD+AL+YF+LLLKSGT+PD
Sbjct: 360 LVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPD 419
Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
H+ FV VL+ACTHAGLV+KGL++F+SI EKH L++T+DHY C+VDLLARSGRF + + VI
Sbjct: 420 HVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVI 479
Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
S+MPMKP KFLWAS+LGGC +GN+DLA+ AA+ LF+IEPENP TYVTMANIYA+A
Sbjct: 480 SEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAA 535
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562657|ref|XP_002522334.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223538412|gb|EEF40018.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust.
Identities = 294/390 (75%), Positives = 341/390 (87%)
Query: 1 AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
AI +LC Q RLKEA+Q+L+QI PSPSIYSSLIQ C +NRALE GKKVH H+K SGF PG
Sbjct: 55 AIALLCEQNRLKEAIQVLNQIDRPSPSIYSSLIQSCLKNRALEVGKKVHDHIKLSGFIPG 114
Query: 61 VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
+ ISN LLDMYAKC ++ DAQ LF+EM ERD+CS+N +ISG K G L++AR LFD MP+
Sbjct: 115 LVISNRLLDMYAKCNDLVDAQKLFEEMGERDLCSWNVLISGCAKMGLLKEARKLFDTMPE 174
Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
RDNFSWTAMISGYVR+N+P EAL+LYR+M+ EN SNKFT+SSVL+A +AI CLR+GKE
Sbjct: 175 RDNFSWTAMISGYVRHNRPHEALELYRLMKKCENLTSNKFTVSSVLAAAAAIPCLRIGKE 234
Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
IHGYIMRTG DSDEVVWSALSDMYGKCGSI EAR IFDKMV+RDVV+WTAMI RYF++GR
Sbjct: 235 IHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVNRDVVTWTAMIDRYFEDGR 294
Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
REEGF LF+EL++SGI+PN FTFAGVLNACAD E +GKQVHG+MTR +DP+SFAASA
Sbjct: 295 REEGFELFAELLRSGIKPNDFTFAGVLNACADLGVEGIGKQVHGHMTRADFDPFSFAASA 354
Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
LVHMYSKCGN+ N+++VF GMP+PDLVSWTSLIAGYAQNG PD+AL+YFELLLKSGT+PD
Sbjct: 355 LVHMYSKCGNMVNAERVFRGMPQPDLVSWTSLIAGYAQNGHPDEALQYFELLLKSGTRPD 414
Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
HI FVGVL+AC HAGLVDKGLQYFHSI +K
Sbjct: 415 HITFVGVLSACAHAGLVDKGLQYFHSIMDK 444
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218192399|gb|EEC74826.1| hypothetical protein OsI_10663 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/421 (56%), Positives = 316/421 (75%), Gaps = 8/421 (1%)
Query: 63 ISNCLLDMYAK-CGNISDAQTLFDEMQERDVCSYNTMISGFTKGGS-LEQARNLFDEMPQ 120
+SN LL + + + DA LF + D+CS+NT+IS ++ L AR LFD MPQ
Sbjct: 64 LSNRLLHLLSSHPATLPDALALFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMPQ 123
Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQN--FENSVSNKFTLSSVLSAVSAIQCLRLG 178
RD+F+W+A++SGY R+ QP AL LYR MQ + N+FT SS L+A +A +C R G
Sbjct: 124 RDHFAWSALVSGYARHGQPEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAG 183
Query: 179 KEIHGYIMRTGFDS---DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
+E+H +++R G D+ D V+WSAL+DMY KCG +++AR++FD+M RD VSWTAM+ RY
Sbjct: 184 RELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERY 243
Query: 236 FQEGRREEGFALFSELIKS-GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
F GR EGF LF ++++ G+RPN FT+AGVL ACA+ A E G+QVHG M + G
Sbjct: 244 FDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAEFAVESFGRQVHGRMAKSGTGDS 303
Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
FA SAL+ MYSKCG++ ++ +VF M +PDLVSWT++I+GYAQNG P++AL YF++ L+
Sbjct: 304 CFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLR 363
Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
SG +PDH+ FVGVL+AC HAGLVDKGL+ FHSIKE++ + +TADHYAC++DLL+RSG+F
Sbjct: 364 SGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFE 423
Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
AE +I M +KP+KFLWASLLGGCRIH N+ LA+RAAEALFEIEPENPATYVT+ANIYA
Sbjct: 424 RAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPATYVTLANIYA 483
Query: 475 S 475
S
Sbjct: 484 S 484
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group] gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group] gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group] gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group] gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/421 (56%), Positives = 315/421 (74%), Gaps = 8/421 (1%)
Query: 63 ISNCLLDMYAK-CGNISDAQTLFDEMQERDVCSYNTMISGFTKGGS-LEQARNLFDEMPQ 120
+SN LL + + + DA LF + D+CS+NT+IS ++ L AR LFD MPQ
Sbjct: 64 LSNRLLHLLSSHPATLPDALALFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMPQ 123
Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQN--FENSVSNKFTLSSVLSAVSAIQCLRLG 178
RD+F+W+A++SGY R+ QP AL LYR MQ + N+FT SS L+A +A +C R G
Sbjct: 124 RDHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAG 183
Query: 179 KEIHGYIMRTGFDS---DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235
+E+H +++R G D+ D V+WSAL+DMY KCG +++AR++FD+M RD VSWTAM+ RY
Sbjct: 184 RELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERY 243
Query: 236 FQEGRREEGFALFSELIKS-GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294
F GR EGF LF ++++ G+RPN FT+AGVL ACA A E G+QVHG M + G
Sbjct: 244 FDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDS 303
Query: 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354
FA SAL+ MYSKCG++ ++ +VF M +PDLVSWT++I+GYAQNG P++AL YF++ L+
Sbjct: 304 CFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLR 363
Query: 355 SGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414
SG +PDH+ FVGVL+AC HAGLVDKGL+ FHSIKE++ + +TADHYAC++DLL+RSG+F
Sbjct: 364 SGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFE 423
Query: 415 EAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
AE +I M +KP+KFLWASLLGGCRIH N+ LA+RAAEALFEIEPENPATYVT+ANIYA
Sbjct: 424 RAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPATYVTLANIYA 483
Query: 475 S 475
S
Sbjct: 484 S 484
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 476 | ||||||
| TAIR|locus:2115130 | 691 | AT4G37170 "AT4G37170" [Arabido | 1.0 | 0.688 | 0.651 | 6.5e-177 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.949 | 0.609 | 0.380 | 1e-91 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.945 | 0.576 | 0.382 | 1.2e-88 | |
| TAIR|locus:2205425 | 743 | AT1G68930 "AT1G68930" [Arabido | 0.930 | 0.596 | 0.373 | 8e-85 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.905 | 0.507 | 0.381 | 9.1e-84 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.794 | 0.389 | 0.357 | 1.2e-83 | |
| TAIR|locus:2196583 | 866 | ECB2 "EARLY CHLOROPLAST BIOGEN | 0.794 | 0.436 | 0.360 | 5.1e-83 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.926 | 0.632 | 0.376 | 1.8e-80 | |
| TAIR|locus:2095289 | 1028 | AT3G09040 "AT3G09040" [Arabido | 0.806 | 0.373 | 0.363 | 4.1e-80 | |
| TAIR|locus:2019130 | 895 | OTP87 "organelle transcript pr | 0.934 | 0.497 | 0.363 | 1.8e-78 |
| TAIR|locus:2115130 AT4G37170 "AT4G37170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1718 (609.8 bits), Expect = 6.5e-177, P = 6.5e-177
Identities = 310/476 (65%), Positives = 395/476 (82%)
Query: 1 AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
AID+LC Q+ L+EA+Q+L + P S Y +LIQ C Q RALEEGKKVH H+++SGF PG
Sbjct: 60 AIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPG 119
Query: 61 VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
+ I N LL MYAKCG++ DA+ +FDEM RD+CS+N M++G+ + G LE+AR LFDEM +
Sbjct: 120 IVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTE 179
Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
+D++SWTAM++GYV+ +QP EAL LY +MQ NS N FT+S ++A +A++C+R GKE
Sbjct: 180 KDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKE 239
Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
IHG+I+R G DSDEV+WS+L DMYGKCG I+EAR IFDK+V++DVVSWT+MI RYF+ R
Sbjct: 240 IHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSR 299
Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
EGF+LFSEL+ S RPN +TFAGVLNACAD EELGKQVHGYMTR+G+DPYSFA+S+
Sbjct: 300 WREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSS 359
Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
LV MY+KCGN+E++K V +G P+PDLVSWTSLI G AQNG PD+AL+YF+LLLKSGT+PD
Sbjct: 360 LVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPD 419
Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
H+ FV VL+ACTHAGLV+KGL++F+SI EKH L++T+DHY C+VDLLARSGRF + + VI
Sbjct: 420 HVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVI 479
Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
S+MPMKP KFLWAS+LGGC +GN+DLA+ AA+ LF+IEPENP TYVTMANIYA+A
Sbjct: 480 SEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAA 535
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 173/455 (38%), Positives = 281/455 (61%)
Query: 24 PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83
P+ + +++ C +++A +EG+++H H+ G +++ L+ MY + G + DA +
Sbjct: 132 PNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKV 191
Query: 84 FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
FD+ RDV SY +I G+ G +E A+ LFDE+P +D SW AMISGY EAL
Sbjct: 192 FDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEAL 251
Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
+L++ M N ++ T+ +V+SA + + LG+++H +I GF S+ + +AL D+
Sbjct: 252 ELFKDMMK-TNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDL 310
Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
Y KCG + A +F+++ +DV+SW +IG Y +E LF E+++SG PN T
Sbjct: 311 YSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 370
Query: 264 AGVLNACADHAAEELGKQVHGYMT-RI-GYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321
+L ACA A ++G+ +H Y+ R+ G S ++L+ MY+KCG++E + +VFN +
Sbjct: 371 LSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI 430
Query: 322 PRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381
L SW ++I G+A +G D + + F + K G QPD I FVG+L+AC+H+G++D G
Sbjct: 431 LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGR 490
Query: 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRI 441
F ++ + + +T +HY C++DLL SG F EAE++I+ M M+PD +W SLL C++
Sbjct: 491 HIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKM 550
Query: 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
HGN++L + AE L +IEPENP +YV ++NIYASA
Sbjct: 551 HGNVELGESFAENLIKIEPENPGSYVLLSNIYASA 585
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
Identities = 178/465 (38%), Positives = 278/465 (59%)
Query: 13 EALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS-NCLLDMY 71
+A + ++ + +++L+ QN +EE + KS + +S NCLL +
Sbjct: 175 DARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACML---FKSR--ENWALVSWNCLLGGF 229
Query: 72 AKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMIS 131
K I +A+ FD M RDV S+NT+I+G+ + G +++AR LFDE P +D F+WTAM+S
Sbjct: 230 VKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVS 289
Query: 132 GYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD 191
GY++ EA +L+ M N VS L+ + + + + KE+ +
Sbjct: 290 GYIQNRMVEEARELFDKMPE-RNEVSWNAMLAGYVQG----ERMEMAKELFDVMPCRNVS 344
Query: 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSEL 251
+ W+ + Y +CG I+EA+ +FDKM RD VSW AMI Y Q G E LF ++
Sbjct: 345 T----WNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQM 400
Query: 252 IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311
+ G R N +F+ L+ CAD A ELGKQ+HG + + GY+ F +AL+ MY KCG++
Sbjct: 401 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSI 460
Query: 312 ENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371
E + +F M D+VSW ++IAGY+++G + AL +FE + + G +PD V VL+AC
Sbjct: 461 EEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSAC 520
Query: 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFL 431
+H GLVDKG QYF+++ + +G+ + HYAC+VDLL R+G +A +++ MP +PD +
Sbjct: 521 SHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAI 580
Query: 432 WASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
W +LLG R+HGN +LA+ AA+ +F +EPEN YV ++N+YAS+
Sbjct: 581 WGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASS 625
|
|
| TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
Identities = 166/445 (37%), Positives = 270/445 (60%)
Query: 31 SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER 90
++++ N + GK++H + GF+ + + + LL MYA G ISDA+ +F + +R
Sbjct: 144 TMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDR 203
Query: 91 DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
+ YN+++ G G +E A LF M ++D+ SW AMI G + EA++ +R M+
Sbjct: 204 NTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMK 262
Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
+ +++ SVL A + + GK+IH I+RT F V SAL DMY KC +
Sbjct: 263 -VQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCL 321
Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
+ A+ +FD+M ++VVSWTAM+ Y Q GR EE +F ++ +SGI P+ +T ++AC
Sbjct: 322 HYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISAC 381
Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
A+ ++ E G Q HG G Y +++LV +Y KCG++++S ++FN M D VSWT
Sbjct: 382 ANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWT 441
Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
++++ YAQ G + ++ F+ +++ G +PD + GV++AC+ AGLV+KG +YF + +
Sbjct: 442 AMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSE 501
Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
+G+ + HY+C++DL +RSGR EA I+ MP PD W +LL CR GNL++ K
Sbjct: 502 YGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKW 561
Query: 451 AAEALFEIEPENPATYVTMANIYAS 475
AAE+L E++P +PA Y +++IYAS
Sbjct: 562 AAESLIELDPHHPAGYTLLSSIYAS 586
|
|
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
Identities = 171/448 (38%), Positives = 270/448 (60%)
Query: 45 GKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104
GK++H +S +F+ NCL+DMYAKCG + +A T+F M +DV S+N M++G+++
Sbjct: 248 GKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQ 307
Query: 105 GGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160
G E A LF++M + D +W+A ISGY + EAL + R M + N+
Sbjct: 308 IGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS-SGIKPNEV 366
Query: 161 TLSSVLSAVSAIQCLRLGKEIHGY-------IMRTGFDSDEVVWSALSDMYGKCGSINEA 213
TL SVLS +++ L GKEIH Y + + G + +V + L DMY KC ++ A
Sbjct: 367 TLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTA 426
Query: 214 RQIFDKMV--DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI--RPNAFTFAGVLNA 269
R +FD + +RDVV+WT MIG Y Q G + L SE+ + RPNAFT + L A
Sbjct: 427 RAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVA 486
Query: 270 CADHAAEELGKQVHGYMTRIGYDPYS-FAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
CA AA +GKQ+H Y R + F ++ L+ MY+KCG++ +++ VF+ M + V+
Sbjct: 487 CASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVT 546
Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
WTSL+ GY +G ++AL F+ + + G + D + + VL AC+H+G++D+G++YF+ +K
Sbjct: 547 WTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMK 606
Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
G++ +HYAC+VDLL R+GR + A +I +MPM+P +W + L CRIHG ++L
Sbjct: 607 TVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELG 666
Query: 449 KRAAEALFEIEPENPATYVTMANIYASA 476
+ AAE + E+ + +Y ++N+YA+A
Sbjct: 667 EYAAEKITELASNHDGSYTLLSNLYANA 694
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 719 (258.2 bits), Expect = 1.2e-83, Sum P(2) = 1.2e-83
Identities = 136/380 (35%), Positives = 225/380 (59%)
Query: 96 NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155
N ++ + K GSL A+ +F + + SW A+I G+ + N P +LD + M+
Sbjct: 434 NAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMK-ISGL 492
Query: 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215
+ + FT+ S+LSA S ++ LRLGKE+HG+I+R + D V+ ++ +Y CG + +
Sbjct: 493 LPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQA 552
Query: 216 IFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275
+FD M D+ +VSW +I Y Q G + +F +++ GI+ + V AC+ +
Sbjct: 553 LFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPS 612
Query: 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335
LG++ H Y + + +F A +L+ MY+K G++ S KVFNG+ SW ++I G
Sbjct: 613 LRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMG 672
Query: 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395
Y +G+ +A++ FE + ++G PD + F+GVLTAC H+GL+ +GL+Y +K GL
Sbjct: 673 YGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKP 732
Query: 396 TADHYACIVDLLARSGRFHEAEDVISK-MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454
HYAC++D+L R+G+ +A V+++ M + D +W SLL CRIH NL++ ++ A
Sbjct: 733 NLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAK 792
Query: 455 LFEIEPENPATYVTMANIYA 474
LFE+EPE P YV ++N+YA
Sbjct: 793 LFELEPEKPENYVLLSNLYA 812
|
|
| TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 668 (240.2 bits), Expect = 5.1e-83, Sum P(2) = 5.1e-83
Identities = 139/386 (36%), Positives = 220/386 (56%)
Query: 91 DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYN-QPIEALDLYRMM 149
D+ N++ + GS +A LF M ++D SWT MISGY YN P +A+D YRMM
Sbjct: 331 DISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGY-EYNFLPDKAIDTYRMM 389
Query: 150 QNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCG 208
++SV ++ T+++VLSA + + L G E+H ++ S +V + L +MY KC
Sbjct: 390 D--QDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCK 447
Query: 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268
I++A IF + ++V+SWT++I R E +F +K ++PNA T L
Sbjct: 448 CIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL-IFLRQMKMTLQPNAITLTAALA 506
Query: 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS 328
ACA A GK++H ++ R G F +AL+ MY +CG + + FN + D+ S
Sbjct: 507 ACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQKK-DVTS 565
Query: 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388
W L+ GY++ G +E F+ ++KS +PD I F+ +L C+ + +V +GL YF +
Sbjct: 566 WNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKM- 624
Query: 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
E +G+T HYAC+VDLL R+G EA I KMP+ PD +W +LL CRIH +DL
Sbjct: 625 EDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLG 684
Query: 449 KRAAEALFEIEPENPATYVTMANIYA 474
+ +A+ +FE++ ++ Y+ + N+YA
Sbjct: 685 ELSAQHIFELDKKSVGYYILLCNLYA 710
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
Identities = 172/457 (37%), Positives = 266/457 (58%)
Query: 29 YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
++S++ C + +G +VHS + S F V+I + L+DMY+KCGN++DAQ +FDEM
Sbjct: 155 FASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMG 214
Query: 89 ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVRYNQPIEALD 144
+R+V S+N++I+ F + G +A ++F M + D + ++IS + +
Sbjct: 215 DRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQE 274
Query: 145 LY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
++ R+++N + + N LS+ + A +C R+ KE +I + + + +++
Sbjct: 275 VHGRVVKN--DKLRNDIILSNAFVDMYA-KCSRI-KEAR-FIFDSMPIRNVIAETSMISG 329
Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
Y S AR +F KM +R+VVSW A+I Y Q G EE +LF L + + P ++F
Sbjct: 330 YAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSF 389
Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYS------FAASALVHMYSKCGNVENSKKV 317
A +L ACAD A LG Q H ++ + G+ S F ++L+ MY KCG VE V
Sbjct: 390 ANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLV 449
Query: 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377
F M D VSW ++I G+AQNG ++ALE F +L+SG +PDHI +GVL+AC HAG V
Sbjct: 450 FRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFV 509
Query: 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLG 437
++G YF S+ G+ DHY C+VDLL R+G EA+ +I +MPM+PD +W SLL
Sbjct: 510 EEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLA 569
Query: 438 GCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474
C++H N+ L K AE L E+EP N YV ++N+YA
Sbjct: 570 ACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYA 606
|
|
| TAIR|locus:2095289 AT3G09040 "AT3G09040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 669 (240.6 bits), Expect = 4.1e-80, Sum P(2) = 4.1e-80
Identities = 142/391 (36%), Positives = 230/391 (58%)
Query: 89 ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRM 148
+RD+ + +++I ++K G ++ AR +F +P+ S A+I+GY + N EA+ L++
Sbjct: 561 DRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNLE-EAVVLFQE 619
Query: 149 MQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD-EVVWSALSDMYGK 206
M V+ ++ T ++++ A + L LG + HG I + GF S+ E + +L MY
Sbjct: 620 M--LTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMN 677
Query: 207 CGSINEARQIFDKMVD-RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAG 265
+ EA +F ++ + +V WT M+ + Q G EE + E+ G+ P+ TF
Sbjct: 678 SRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVT 737
Query: 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-P 324
VL C+ ++ G+ +H + + +D ++ L+ MY+KCG+++ S +VF+ M R
Sbjct: 738 VLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRS 797
Query: 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384
++VSW SLI GYA+NG + AL+ F+ + +S PD I F+GVLTAC+HAG V G + F
Sbjct: 798 NVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIF 857
Query: 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGN 444
+ ++G+ DH AC+VDLL R G EA+D I +KPD LW+SLLG CRIHG+
Sbjct: 858 EMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGD 917
Query: 445 LDLAKRAAEALFEIEPENPATYVTMANIYAS 475
+ +AE L E+EP+N + YV ++NIYAS
Sbjct: 918 DIRGEISAEKLIELEPQNSSAYVLLSNIYAS 948
|
|
| TAIR|locus:2019130 OTP87 "organelle transcript processing 87" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
Identities = 164/451 (36%), Positives = 269/451 (59%)
Query: 27 SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD---AQTL 83
+I + +I Q++ + ++ + + G + F S C L C N+ TL
Sbjct: 419 NIVNVMITSFSQSKKPGKAIRLFTRMLQEGLRTDEF-SVCSLLSVLDCLNLGKQVHGYTL 477
Query: 84 FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEAL 143
+ D+ +++ + ++K GSLE++ LF +P +DN W +MISG+ Y EA+
Sbjct: 478 KSGLV-LDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAI 536
Query: 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDM 203
L+ M + + + ++ TL++VL+ S+ L GKEIHGY +R G D + SAL +M
Sbjct: 537 GLFSEMLD-DGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNM 595
Query: 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263
Y KCGS+ ARQ++D++ + D VS +++I Y Q G ++GF LF +++ SG ++F
Sbjct: 596 YSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAI 655
Query: 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323
+ +L A A LG QVH Y+T+IG S+L+ MYSK G++++ K F+ +
Sbjct: 656 SSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQING 715
Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383
PDL++WT+LIA YAQ+G ++AL+ + L+ + G +PD + FVGVL+AC+H GLV++ +
Sbjct: 716 PDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESYFH 775
Query: 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443
+S+ + +G+ HY C+VD L RSGR EAE I+ M +KPD +W +LL C+IHG
Sbjct: 776 LNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDALVWGTLLAACKIHG 835
Query: 444 NLDLAKRAAEALFEIEPENPATYVTMANIYA 474
++L K AA+ E+EP + Y++++NI A
Sbjct: 836 EVELGKVAAKKAIELEPSDAGAYISLSNILA 866
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O23169 | PP353_ARATH | No assigned EC number | 0.6512 | 1.0 | 0.6888 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 476 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-114 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-102 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-85 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-68 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-49 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-18 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.004 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.004 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 351 bits (902), Expect = e-114
Identities = 171/480 (35%), Positives = 262/480 (54%), Gaps = 37/480 (7%)
Query: 2 IDILCNQRRLKEALQILHQISHPSP-----SIYSSLIQFCRQNRALEEGKKVHSHLKSSG 56
I+ L R +EAL++ + P S Y +L++ C +++ K V+ H++SSG
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 57 FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFD 116
F+P ++ N +L M+ KCG + DA R LFD
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDA-------------------------------RRLFD 182
Query: 117 EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176
EMP+R+ SW +I G V EA L+R M + S + T +L A + + R
Sbjct: 183 EMPERNLASWGTIIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFVVMLRASAGLGSAR 241
Query: 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236
G+++H +++TG D V AL DMY KCG I +AR +FD M ++ V+W +M+ Y
Sbjct: 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA 301
Query: 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296
G EE L+ E+ SG+ + FTF+ ++ + A E KQ H + R G+
Sbjct: 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361
Query: 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
A +ALV +YSK G +E+++ VF+ MPR +L+SW +LIAGY +G KA+E FE ++ G
Sbjct: 362 ANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421
Query: 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416
P+H+ F+ VL+AC ++GL ++G + F S+ E H + A HYAC+++LL R G EA
Sbjct: 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
Query: 417 EDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476
+I + P KP +WA+LL CRIH NL+L + AAE L+ + PE YV + N+Y S+
Sbjct: 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 324 bits (831), Expect = e-102
Identities = 144/386 (37%), Positives = 235/386 (60%), Gaps = 3/386 (0%)
Query: 91 DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150
DV N++I + GS +A +F M +D SWTAMISGY + P +AL+ Y +M+
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME 381
Query: 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210
+N ++ T++SVLSA + + L +G ++H R G S VV +AL +MY KC I
Sbjct: 382 -QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440
Query: 211 NEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270
++A ++F + ++DV+SWT++I R E F +++ + ++PN+ T L+AC
Sbjct: 441 DKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSAC 499
Query: 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWT 330
A A GK++H ++ R G F +AL+ +Y +CG + + FN + D+VSW
Sbjct: 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-DVVSWN 558
Query: 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390
L+ GY +G A+E F +++SG PD + F+ +L AC+ +G+V +GL+YFHS++EK
Sbjct: 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618
Query: 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450
+ +T HYAC+VDLL R+G+ EA + I+KMP+ PD +W +LL CRIH +++L +
Sbjct: 619 YSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGEL 678
Query: 451 AAEALFEIEPENPATYVTMANIYASA 476
AA+ +FE++P + Y+ + N+YA A
Sbjct: 679 AAQHIFELDPNSVGYYILLCNLYADA 704
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 279 bits (715), Expect = 3e-85
Identities = 145/456 (31%), Positives = 232/456 (50%), Gaps = 44/456 (9%)
Query: 5 LCNQRRLKEALQILHQISH----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG 60
LC+ +L++AL++L + Y +L + C RA+EEG +V S SS G
Sbjct: 61 LCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLG 120
Query: 61 VFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ 120
V + N +L M+ + G + A +F +M ERD+ S+N ++ G+ K G ++A L+ M
Sbjct: 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRM-- 178
Query: 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180
W + +P D+Y T VL I L G+E
Sbjct: 179 ----LWAGV--------RP----DVY--------------TFPCVLRTCGGIPDLARGRE 208
Query: 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGR 240
+H +++R GF+ D V +AL MY KCG + AR +FD+M RD +SW AMI YF+ G
Sbjct: 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGE 268
Query: 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300
EG LF + + + P+ T V++AC E LG+++HGY+ + G+ ++
Sbjct: 269 CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328
Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
L+ MY G+ ++KVF+ M D VSWT++I+GY +NG+PDKALE + L+ + PD
Sbjct: 329 LIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388
Query: 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420
I VL+AC G +D G++ H + E+ GL ++++ ++ +A +V
Sbjct: 389 EITIASVLSACACLGDLDVGVK-LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447
Query: 421 SKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALF 456
+P K D W S++ G R++ R EAL
Sbjct: 448 HNIPEK-DVISWTSIIAGLRLN------NRCFEALI 476
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 233 bits (597), Expect = 2e-68
Identities = 146/458 (31%), Positives = 233/458 (50%), Gaps = 43/458 (9%)
Query: 11 LKEALQILHQI--SHPSPSIYS--SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
EAL + H++ + P +Y+ +++ C L G++VH+H+ GF+ V + N
Sbjct: 168 FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227
Query: 67 LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSW 126
L+ MY KCG DV S AR +FD MP+RD SW
Sbjct: 228 LITMYVKCG---------------DVVS----------------ARLVFDRMPRRDCISW 256
Query: 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLRLGKEIHGYI 185
AMISGY + +E L+L+ M+ E SV + T++SV+SA + RLG+E+HGY+
Sbjct: 257 NAMISGYFENGECLEGLELFFTMR--ELSVDPDLMTITSVISACELLGDERLGREMHGYV 314
Query: 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245
++TGF D V ++L MY GS EA ++F +M +D VSWTAMI Y + G ++
Sbjct: 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKAL 374
Query: 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
++ + + + P+ T A VL+ACA ++G ++H R G Y A+AL+ MY
Sbjct: 375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434
Query: 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
SKC ++ + +VF+ +P D++SWTS+IAG N +AL +F +L + +P+ + +
Sbjct: 435 SKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLI 493
Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
L+AC G + G + H+ + G+ + ++DL R GR + A + +
Sbjct: 494 AALSACARIGALMCGKE-IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS--H 550
Query: 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463
+ D W LL G HG +A + E NP
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG-VNP 587
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 4e-49
Identities = 97/331 (29%), Positives = 172/331 (51%), Gaps = 8/331 (2%)
Query: 128 AMISGYVRYNQPIEALDLYRMMQ---NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184
+ I V + EAL+L+ +++ F S T +++ A A++ +R K ++ +
Sbjct: 92 SQIEKLVACGRHREALELFEILEAGCPFTLPAS---TYDALVEACIALKSIRCVKAVYWH 148
Query: 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244
+ +GF+ D+ + + + M+ KCG + +AR++FD+M +R++ SW +IG G E
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREA 208
Query: 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304
FALF E+ + G TF +L A A + G+Q+H + + G +F + AL+ M
Sbjct: 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDM 268
Query: 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364
YSKCG++E+++ VF+GMP V+W S++AGYA +G ++AL + + SG D F
Sbjct: 269 YSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328
Query: 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424
++ + L++ Q H+ + G +VDL ++ GR +A +V +MP
Sbjct: 329 SIMIRIFSRLALLEHAKQA-HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387
Query: 425 MKPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455
K + W +L+ G HG A E +
Sbjct: 388 RK-NLISWNALIAGYGNHGRGTKAVEMFERM 417
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 8e-18
Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 15/205 (7%)
Query: 5 LCNQRRLKEALQILHQI---SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV 61
L R EAL Q+ P+ + + C + AL GK++H+H+ +G
Sbjct: 465 LRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524
Query: 62 FISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR 121
F+ N LLD+Y +CG ++ A F+ E+DV S+N +++G+ G A LF+ M +
Sbjct: 525 FLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583
Query: 122 ----DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177
D ++ +++ R + L+ + M+ + N + V+ + R
Sbjct: 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG-----RA 638
Query: 178 GK--EIHGYIMRTGFDSDEVVWSAL 200
GK E + +I + D VW AL
Sbjct: 639 GKLTEAYNFINKMPITPDPAVWGAL 663
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 8e-15
Identities = 73/326 (22%), Positives = 130/326 (39%), Gaps = 84/326 (25%)
Query: 12 KEALQILHQISHPSPSI----YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
+EAL + +++ SI +S +I+ + LE K+ H+ L +GF + + L
Sbjct: 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366
Query: 68 LDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT 127
+D+Y+K G + D ARN+FD MP+++ SW
Sbjct: 367 VDLYSKWGRMED-------------------------------ARNVFDRMPRKNLISWN 395
Query: 128 AMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186
A+I+GY + + +A++++ RM+ E N T +VLSA
Sbjct: 396 ALIAGYGNHGRGTKAVEMFERMIA--EGVAPNHVTFLAVLSACR---------------- 437
Query: 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM-----VDRDVVSWTAMIGRYFQEGRR 241
+S LS+ + +IF M + + + MI +EG
Sbjct: 438 ----------YSGLSE---------QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478
Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA- 300
+E +A+ ++ +P +A +L AC H ELG+ + G P
Sbjct: 479 DEAYAMIR---RAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL--YGMGPEKLNNYVV 533
Query: 301 LVHMYSKCGNVENSKKVFNGMPRPDL 326
L+++Y+ G + KV + R L
Sbjct: 534 LLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 5e-11
Identities = 66/332 (19%), Positives = 138/332 (41%), Gaps = 68/332 (20%)
Query: 171 AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM----VDRDVV 226
A++ LRL +E G +D +++ L K G ++ ++F +M V+ +V
Sbjct: 456 ALRVLRLVQE-------AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508
Query: 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACA--------------- 271
++ A+I + G+ + F + + ++P+ F +++AC
Sbjct: 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM 568
Query: 272 ---------DHA-----------------AEELGKQVHGYMTRIGYDPYSFAASALVHMY 305
DH A+E+ + +H Y + + Y+ A V+
Sbjct: 569 KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA----VNSC 624
Query: 306 SKCGNVENSKKVFNGMPR----PDLVSWTSLI--AGYAQNGMPDKALEYFELLLKSGTQP 359
S+ G+ + + +++ M + PD V +++L+ AG+A G DKA E + K G +
Sbjct: 625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA--GDLDKAFEILQDARKQGIKL 682
Query: 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419
+ + ++ AC++A K L+ + IK L T ++ L + +A +V
Sbjct: 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEV 741
Query: 420 ISKMP---MKPDKFLWASLLGGCRIHGNLDLA 448
+S+M + P+ ++ LL + D+
Sbjct: 742 LSEMKRLGLCPNTITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 1e-10
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD 272
DVV++ +I Y ++G+ EE LF+E+ K GI+PN +T++ +++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 4e-10
Identities = 72/380 (18%), Positives = 161/380 (42%), Gaps = 31/380 (8%)
Query: 8 QRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCL 67
QR +KEA + I +P+ S ++ L+ C ++ ++ +V ++ +G K + L
Sbjct: 419 QRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478
Query: 68 LDMYAKCGNISDAQTLFDEMQ----ERDVCSYNTMISGFTKGGSLEQARNLFDEM----- 118
+ AK G + +F EM E +V ++ +I G + G + +A + M
Sbjct: 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538
Query: 119 -PQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS-NKFTLSSVLSAVSAIQCLR 176
P R F+ A+IS + A D+ M+ + + + T+ +++ A C
Sbjct: 539 KPDRVVFN--ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA-----CAN 591
Query: 177 LG-----KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV----VS 227
G KE++ I V++ + + G + A I+D M + V V
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651
Query: 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287
++A++ G ++ F + + K GI+ +++ ++ AC++ + +++ +
Sbjct: 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711
Query: 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR----PDLVSWTSLIAGYAQNGMPD 343
I P +AL+ + + + +V + M R P+ ++++ L+ + D
Sbjct: 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771
Query: 344 KALEYFELLLKSGTQPDHIV 363
L+ + G +P+ ++
Sbjct: 772 VGLDLLSQAKEDGIKPNLVM 791
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 2e-09
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 59 PGVFISNCLLDMYAKCGNISDAQTLFDEMQER----DVCSYNTMISGFTK 104
P V N L+D Y K G + +A LF+EM++R +V +Y+ +I G K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 2e-09
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 91 DVCSYNTMISGFTKGGSLEQARNLFDEMPQR----DNFSWTAMISGYVR 135
DV +YNT+I G+ K G +E+A LF+EM +R + ++++ +I G +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 1e-07
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371
PD+V++ +LI GY + G ++AL+ F + K G +P+ + ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 2e-06
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 89 ERDVCSYNTMISGFTKGGSLEQARNLFDEMP 119
+ DV +YNT+I G + G +++A L DEM
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 2e-06
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSG 356
V++ SLI+GY + G ++ALE F+ + + G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 6e-06
Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 24/221 (10%)
Query: 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301
+E F F++LI++ P TF +++ CA + +V + G + L
Sbjct: 423 KEAFR-FAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478
Query: 302 VHMYSKCGNVENSKKVFNGMP----RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357
+ +K G V+ +VF+ M ++ ++ +LI G A+ G KA + ++
Sbjct: 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538
Query: 358 QPDHIVFVGVLTACTHAGLVDKGLQYF-------HSIKEKHGLTYTADHYACIVDLLARS 410
+PD +VF +++AC +G VD+ H I H +T A AC A +
Sbjct: 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH-ITVGALMKAC-----ANA 592
Query: 411 GRFHEAEDV---ISKMPMKPDKFLWASLLGGCRIHGNLDLA 448
G+ A++V I + +K ++ + C G+ D A
Sbjct: 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360
V++ +LI G + G ++ALE F+ + + G +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 94 SYNTMISGFTKGGSLEQARNLFDEMPQRD 122
+YN++ISG+ K G LE+A LF EM ++
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260
V++ +I + GR EE LF E+ + GI P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 124 FSWTAMISGYVRYNQPIEALDLYRMMQ 150
++ ++ISGY + + EAL+L++ M+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 193 DEVVWSALSDMYGKCGSINEARQIFDKMVDR----DVVSWTAMI 232
D V ++ L D Y K G + EA ++F++M R +V +++ +I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 5e-04
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 323 RPDLVSWTSLIAGYAQNGMPDKALEYFE 350
+PD+V++ +LI G + G D+A+E +
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLD 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 7e-04
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 93 CSYNTMISGFTKGGSLEQARNLFDEMPQRD 122
+YNT+I G K G +E+A LF EM +R
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 65 NCLLDMYAKCGNISDAQTLFDEMQERDV 92
N L+ Y K G + +A LF EM+E+ V
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.003
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGI 256
V++ ++I Y + G+ EE LF E+ + G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.003
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359
L ++ +L+ A+ G PD AL E + SG +P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSA 168
D ++ +I GY + + EAL L+ M+ N +T S ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKK-RGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 34.6 bits (81), Expect = 0.004
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 55 SGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88
G KP V N L+D + G + +A L DEM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 476 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.85 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.84 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.79 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.79 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.79 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.74 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.72 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.72 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.71 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.71 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.71 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.7 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.7 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.7 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.7 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.69 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.69 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.68 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.67 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.66 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.66 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.65 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.65 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.64 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.63 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.6 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.57 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.53 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.53 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.49 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.47 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.47 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.45 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.43 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.41 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.4 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.4 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.4 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.4 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.39 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.36 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.36 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.36 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.36 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.35 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.34 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.33 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.32 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.31 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.3 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.3 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.29 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.25 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.25 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.24 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.23 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.23 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.21 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.21 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.2 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.19 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.15 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.13 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.12 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.1 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.07 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.05 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.04 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.03 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.02 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.96 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.96 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.96 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.92 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.88 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.88 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.88 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.75 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.73 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.72 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.71 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.71 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.69 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.69 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.69 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.68 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.68 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.67 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.66 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.65 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.64 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.63 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.63 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.61 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.59 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.57 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.57 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.53 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.52 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.51 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.49 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.47 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.38 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.37 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.36 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.35 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.34 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.34 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.33 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.3 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.28 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.26 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.25 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.22 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.22 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.22 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.22 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 98.21 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.2 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.19 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.14 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.13 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.12 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.12 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.09 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.08 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.04 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.04 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.03 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 98.03 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.99 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.97 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.96 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.95 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.94 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.94 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.93 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.91 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.87 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.86 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.85 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.8 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.78 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.77 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.77 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.76 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.75 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.74 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.74 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.74 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.73 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.72 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.69 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.68 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.68 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.67 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.66 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.64 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.64 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.63 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.6 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.58 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.55 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.54 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.49 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.48 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.48 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.47 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.45 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.45 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.44 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.43 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.41 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.4 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.33 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.29 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.27 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.22 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.2 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.18 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.18 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.18 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.15 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.15 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.14 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.14 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.06 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.01 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.01 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.0 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.96 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.92 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.88 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.85 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.79 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.78 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.77 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.77 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.76 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.76 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.75 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.73 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.72 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.69 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.65 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.65 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.65 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.63 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.5 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.47 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.46 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.43 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.33 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.32 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.25 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.16 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.16 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.15 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.1 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 96.09 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.07 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.06 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.02 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.97 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.93 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.89 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.83 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.76 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.75 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.65 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.59 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 95.55 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.54 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.53 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.3 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.21 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.19 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.11 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.02 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.0 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.99 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.92 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.79 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 94.77 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.76 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 94.75 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.73 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.66 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.58 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 94.52 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.49 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.47 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.17 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.98 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.9 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 93.73 | |
| PRK09687 | 280 | putative lyase; Provisional | 93.67 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 93.61 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 93.52 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.47 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.39 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.39 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.35 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.32 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.25 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.24 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.08 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.06 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.01 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.99 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 92.73 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.66 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 92.65 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.38 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.34 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.23 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 92.2 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.12 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 92.04 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.86 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.78 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.47 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.34 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.2 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.92 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.2 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.04 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.91 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.83 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.81 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.66 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.64 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.14 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.91 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 88.73 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 88.65 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.55 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.36 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 88.22 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.72 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 87.7 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.68 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 87.32 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.27 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 87.21 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.2 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.07 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 86.69 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 86.29 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 86.27 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.02 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 85.91 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 85.58 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.32 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 84.98 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.9 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 84.62 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 84.48 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 84.15 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 84.02 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 83.61 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 83.47 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 83.33 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 82.89 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.86 | |
| cd08819 | 88 | CARD_MDA5_2 Caspase activation and recruitment dom | 82.63 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 82.18 | |
| PF13934 | 226 | ELYS: Nuclear pore complex assembly | 80.99 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 80.83 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 80.28 | |
| PF06957 | 422 | COPI_C: Coatomer (COPI) alpha subunit C-terminus; | 80.14 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-73 Score=560.47 Aligned_cols=473 Identities=32% Similarity=0.603 Sum_probs=463.6
Q ss_pred ChhhhhhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 038936 1 AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80 (476)
Q Consensus 1 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 80 (476)
+|.+|++.|++++|.++|+.|+.||..+||++|.+|.+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.+.|
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccc----ccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCC
Q 038936 81 QTLFDEMQE----RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV 156 (476)
Q Consensus 81 ~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 156 (476)
.+++..+.+ ||..+|+.++.+|++.|++++|.++|++|..+|..+|+.++.+|++.|++++|+++|++|.. .+..
T Consensus 308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~ 386 (857)
T PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ-DNVS 386 (857)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCC
Confidence 999999875 79999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred CCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHH
Q 038936 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236 (476)
Q Consensus 157 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 236 (476)
||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.|+.+|++.|++++|.++|++|.++|..+|+.++.+|+
T Consensus 387 Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~ 466 (857)
T PLN03077 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR 466 (857)
T ss_pred CCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHH
Q 038936 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316 (476)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 316 (476)
+.|+.++|..+|++|.. +++||..||+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.++.+|+++|++++|..
T Consensus 467 ~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~ 545 (857)
T PLN03077 467 LNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWN 545 (857)
T ss_pred HCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHH
Confidence 99999999999999986 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC
Q 038936 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396 (476)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 396 (476)
+|+.+ .+|..+|+.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+..++.|+
T Consensus 546 ~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 546 QFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999977799999
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhcC
Q 038936 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476 (476)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 476 (476)
..+|..++.+|.+.|++++|.+++++|+.+||..+|.+++.+|..+|+.+.++...+++++++|+++..|..|+++|+.+
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~ 704 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA 704 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999863
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-69 Score=524.06 Aligned_cols=452 Identities=35% Similarity=0.599 Sum_probs=441.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHccc----ccchHHHHH
Q 038936 24 PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSG-FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE----RDVCSYNTM 98 (476)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l 98 (476)
.+...|+.+|..+.+.|++++|.++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+ ||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455689999999999999999999999998864 789999999999999999999999999999974 899999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhH
Q 038936 99 ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178 (476)
Q Consensus 99 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 178 (476)
+..|++.|++++|.++|++|.+||..+|+.++.+|++.|++++|+++|++|.+ .+..|+..+|+.++.+|+..|..+.+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999998 89999999999999999999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038936 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258 (476)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 258 (476)
.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|++|.++|..+||.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHh
Q 038936 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQ 338 (476)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 338 (476)
|..||+.++.+|++.|+++.|.+++..|.+.|++|+..+++.++.+|+++|++++|.++|++|.+||..+||.++.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH
Q 038936 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418 (476)
Q Consensus 339 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 418 (476)
.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+..++.|+..+|+.++.+|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhcC
Q 038936 419 VISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYASA 476 (476)
Q Consensus 419 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 476 (476)
++++++..|+..+|++++.+|..+|+++.|..+++++++++|++..+|..|+++|+++
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999863
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-69 Score=533.20 Aligned_cols=469 Identities=28% Similarity=0.502 Sum_probs=442.8
Q ss_pred ChhhhhhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 038936 1 AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80 (476)
Q Consensus 1 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 80 (476)
+|++|++.|+++.|.++|++|++||..+|+++|.+|.+.|++++|.++|++|...|+.||..||+.++.+|+..+++..+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccc----ccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCC
Q 038936 81 QTLFDEMQE----RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV 156 (476)
Q Consensus 81 ~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 156 (476)
.+++..+.+ +|..+++.++.+|++.|++++|.++|++|.++|..+||++|.+|++.|++++|+++|++|.. .++.
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~-~g~~ 285 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE-LSVD 285 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH-cCCC
Confidence 999998874 78999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred CCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHH
Q 038936 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYF 236 (476)
Q Consensus 157 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 236 (476)
||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|.++|..+|+.++.+|+
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHH
Q 038936 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316 (476)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 316 (476)
+.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|++.|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC
Q 038936 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396 (476)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 396 (476)
+|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+.+.+.+++..+.+. |+.++
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~ 523 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFD 523 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCcc
Confidence 99999999999999999999999999999999999986 58999999999999999999999999999998876 88888
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCchhHHHHHHhhh
Q 038936 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI--EPENPATYVTMANIYA 474 (476)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~y~ 474 (476)
..+++.++.+|.++|++++|.++|+.+ .||..+|+.++.+|.++|+.++|+++|++|.+. .| |..+|..+...|.
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~ 600 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACS 600 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHh
Confidence 888888888888888888888888887 678888888888888888888888888888773 34 5567777776665
Q ss_pred c
Q 038936 475 S 475 (476)
Q Consensus 475 ~ 475 (476)
.
T Consensus 601 ~ 601 (857)
T PLN03077 601 R 601 (857)
T ss_pred h
Confidence 3
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-65 Score=493.57 Aligned_cols=466 Identities=19% Similarity=0.319 Sum_probs=368.4
Q ss_pred hhhhhhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038936 2 IDILCNQRRLKEALQILHQIS-----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76 (476)
Q Consensus 2 i~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 76 (476)
+..|++.|++++|+++|+.|. +++...++.++..|.+.|.+++|..+++.|.. |+..+|+.++.+|++.|+
T Consensus 377 y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~ 452 (1060)
T PLN03218 377 YNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQD 452 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcC
Confidence 456777888888888888885 34556667777888888888888888877754 788888888888888888
Q ss_pred hHHHHHHHHHccc----ccchHHHHHHHHHHhcCCHHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 038936 77 ISDAQTLFDEMQE----RDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRDNFSWTAMISGYVRYNQPIEALDLYRM 148 (476)
Q Consensus 77 ~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 148 (476)
++.|.++|+.|.+ ||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|+.
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 8888888888864 677888888888888888888888888887 36778888888888888888888888888
Q ss_pred HHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHH--cCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc----
Q 038936 149 MQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR--TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD---- 222 (476)
Q Consensus 149 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---- 222 (476)
|.. .++.||..+|+.++.+|++.|+++.|.+++++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+
T Consensus 533 M~~-~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 533 MRS-KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred HHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 877 77888888888888888888888888888888865 56778888888888888888888888888888854
Q ss_pred cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHH
Q 038936 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALV 302 (476)
Q Consensus 223 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 302 (476)
++..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++++|.+.|++|+..+|+.++
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI 691 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45678888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhhhcCChhhHHHHHccCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchh
Q 038936 303 HMYSKCGNVENSKKVFNGMP----RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378 (476)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 378 (476)
.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le 771 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 88888888888888888774 47888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHHH----hcC-------------------ChhhHHHHHhhC---CCCCcHHHH
Q 038936 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLA----RSG-------------------RFHEAEDVISKM---PMKPDKFLW 432 (476)
Q Consensus 379 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~~---~~~p~~~~~ 432 (476)
+|.+++.+|.+. |+.|+..+|+.++..+. +++ ..++|..+|++| +..||..+|
T Consensus 772 ~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 772 VGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVL 850 (1060)
T ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHH
Confidence 888888888765 88888888887775532 221 135677778777 567888888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH-cCCCCchhHHHHHHhh
Q 038936 433 ASLLGGCRIHGNLDLAKRAAEALFE-IEPENPATYVTMANIY 473 (476)
Q Consensus 433 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~y 473 (476)
..++.+++..+....+..+++.+.. -.+++..+|..|...+
T Consensus 851 ~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 851 SQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred HHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 8888777677777777777766542 3345666777776654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-64 Score=487.58 Aligned_cols=455 Identities=17% Similarity=0.272 Sum_probs=427.4
Q ss_pred hhhhhhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 038936 2 IDILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81 (476)
Q Consensus 2 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 81 (476)
+..|.+.|.+++|+++|+.+..|+..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.
T Consensus 413 i~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~ 492 (1060)
T PLN03218 413 FKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcc----cccchHHHHHHHHHHhcCCHHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc-
Q 038936 82 TLFDEMQ----ERDVCSYNTMISGFTKGGSLEQARNLFDEMP----QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNF- 152 (476)
Q Consensus 82 ~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 152 (476)
++|++|. .||..+|+.+|.+|++.|++++|.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|...
T Consensus 493 ~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~ 572 (1060)
T PLN03218 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET 572 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence 9999998 4899999999999999999999999999996 478999999999999999999999999999752
Q ss_pred cCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhc----ccchhhH
Q 038936 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV----DRDVVSW 228 (476)
Q Consensus 153 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~ 228 (476)
.++.||..+|+.++.+|++.|+++.|.++|+.|.+.|++|+..+|+.++.+|++.|++++|.++|++|. .||..+|
T Consensus 573 ~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Ty 652 (1060)
T PLN03218 573 HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652 (1060)
T ss_pred CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999995 4789999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhc
Q 038936 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308 (476)
Q Consensus 229 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (476)
+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.
T Consensus 653 nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~ 732 (1060)
T PLN03218 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHccCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc----c------
Q 038936 309 GNVENSKKVFNGMP----RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH----A------ 374 (476)
Q Consensus 309 ~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~------ 374 (476)
|++++|.++|++|. .||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ .
T Consensus 733 G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~ 812 (1060)
T PLN03218 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEP 812 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999986 499999999999999999999999999999999999999999999876432 1
Q ss_pred -------------CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCC---CCCcHHHHHHHHHH
Q 038936 375 -------------GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP---MKPDKFLWASLLGG 438 (476)
Q Consensus 375 -------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~ 438 (476)
+..+.|..+|++|.+. |+.||..+|..++.++.+.+..+.+..+++.+. ..|+..+|+.++.+
T Consensus 813 v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g 891 (1060)
T PLN03218 813 VVSFDSGRPQIENKWTSWALMVYRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG 891 (1060)
T ss_pred hhhhhccccccccchHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh
Confidence 2246799999999987 999999999999999989999999999999884 55678899999998
Q ss_pred HHhcCChHHHHHHHHHHHHcC
Q 038936 439 CRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~~ 459 (476)
+... .++|..++++|.+..
T Consensus 892 ~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 892 FGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred hccC--hHHHHHHHHHHHHcC
Confidence 7432 368999999999843
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-59 Score=456.12 Aligned_cols=446 Identities=21% Similarity=0.323 Sum_probs=422.9
Q ss_pred ChhhhhhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038936 1 AIDILCNQRRLKEALQILHQIS-----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75 (476)
Q Consensus 1 ~i~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 75 (476)
+|..|.+.|++++|+++|+++. .||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++..|++.|
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g 172 (697)
T PLN03081 93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC
Confidence 3678899999999999999983 57899999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038936 76 NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQ----RDNFSWTAMISGYVRYNQPIEALDLYRMMQN 151 (476)
Q Consensus 76 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 151 (476)
++++|.++|++|.+||..+|+.++.+|++.|++++|.++|++|.+ |+..+|+.++.++.+.|..+.+.+++..+.+
T Consensus 173 ~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 173 MLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred CHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999964 6889999999999999999999999999998
Q ss_pred ccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhh----cccchhh
Q 038936 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM----VDRDVVS 227 (476)
Q Consensus 152 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~ 227 (476)
.+..||..+|+.++.+|++.|+++.|.++|+.|. ++|..+|+.++.+|++.|++++|.++|++| ..||..+
T Consensus 253 -~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t 327 (697)
T PLN03081 253 -TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327 (697)
T ss_pred -hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 8999999999999999999999999999999985 568899999999999999999999999999 4589999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhh
Q 038936 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307 (476)
Q Consensus 228 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 307 (476)
|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|+++.|.++|++|. .||..+|+.++.+|++
T Consensus 328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999986 4788999999999999
Q ss_pred cCChhhHHHHHccCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhccCchhhHHH
Q 038936 308 CGNVENSKKVFNGMP----RPDLVSWTSLIAGYAQNGMPDKALEYFELLLK-SGTQPDHIVFVGVLTACTHAGLVDKGLQ 382 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 382 (476)
.|+.++|.++|++|. .||..+|+.++.+|.+.|+.++|.++|+.|.+ .|+.|+..+|+.++..+++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 999999999999987 49999999999999999999999999999986 6999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
+++++ +..|+..+|+.++.+|...|+++.|..+++++ ...| +..+|..++..|.+.|++++|.+++++|.+.+
T Consensus 484 ~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 484 MIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 98654 67899999999999999999999999999986 5666 46699999999999999999999999999843
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=282.24 Aligned_cols=464 Identities=13% Similarity=0.077 Sum_probs=317.1
Q ss_pred hhhhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-----------------------
Q 038936 3 DILCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSG----------------------- 56 (476)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------------- 56 (476)
..+.+.|++++|+++|+++. +.+...+..+...+...|++++|.+.++.+.+.+
T Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 450 (899)
T TIGR02917 371 EAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKA 450 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHH
Confidence 34566677777777777653 3445555555556666666666666665555433
Q ss_pred ----------CCCChhhHHHHHHHHHhcCChHHHHHHHHHccc---ccchHHHHHHHHHHhcCCHHHHHHHHhcCCCC--
Q 038936 57 ----------FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE---RDVCSYNTMISGFTKGGSLEQARNLFDEMPQR-- 121 (476)
Q Consensus 57 ----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 121 (476)
.+++..++..+...+...|++++|.+.|+++.+ .+...+..++..+...|++++|.+.++++.+.
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 530 (899)
T TIGR02917 451 LAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP 530 (899)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 123344555555555555555555555555442 22334455555555556666666655555431
Q ss_pred -CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHH
Q 038936 122 -DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200 (476)
Q Consensus 122 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 200 (476)
+..++..+...+.+.|++++|..+++++.. ..+.+...+..+...+...|+++.|..+++.+.+.. +.+..++..+
T Consensus 531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 607 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAE--LNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLML 607 (899)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 344555556666666666666666666653 123344455566666677777777777777766543 4556667777
Q ss_pred HHHHHcCCCHHHHHHHHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHH
Q 038936 201 SDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277 (476)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (476)
+..+...|++++|+..|+.+.+ .++..+..+..++...|++++|...++++.+.. +.+..++..+...+...|+++
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 7777777777777777777643 234556667777777777777777777777653 444566777777777777788
Q ss_pred HHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038936 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355 (476)
Q Consensus 278 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 355 (476)
.|..+++.+.+.+ +.+...+..+...+...|++++|...|+.+.. |+..++..++.++.+.|++++|.+.++++.+.
T Consensus 687 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 687 SAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8877777777665 55666677777788888888888888887763 55566777778888888888888888888776
Q ss_pred CCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHH
Q 038936 356 GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWA 433 (476)
Q Consensus 356 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 433 (476)
. +.+...+..++..|...|++++|.+.|+++.+. .+++..++..++..+.+.|+ ++|+..++++ ...| +...+.
T Consensus 766 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~ 841 (899)
T TIGR02917 766 H-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILD 841 (899)
T ss_pred C-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHH
Confidence 4 446677777888888888888888888888864 35677778888888888888 7788888885 3334 455677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 434 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
.++..+...|++++|...++++++.+|.++.++..++.+|..
T Consensus 842 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 883 (899)
T TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLA 883 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 888888889999999999999999999999999999988764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=280.27 Aligned_cols=460 Identities=12% Similarity=0.053 Sum_probs=268.0
Q ss_pred hhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 038936 5 LCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 81 (476)
+.+.|++++|+..++.+. +.++..+..+...+.+.|++++|..+|+++.+.. +.+...+..+...+...|++++|.
T Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 417 (899)
T TIGR02917 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAI 417 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHH
Confidence 444555555555555542 3344455555555555566666666665555542 123344444555555555555555
Q ss_pred HHHHHcccc---cchHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCC
Q 038936 82 TLFDEMQER---DVCSYNTMISGFTKGGSLEQARNLFDEMPQ---RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155 (476)
Q Consensus 82 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 155 (476)
+.++.+.+. +......++..+.+.|++++|..+++.+.. .++.++..+...+...|++++|.+.|+++... .
T Consensus 418 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~ 495 (899)
T TIGR02917 418 ADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI--E 495 (899)
T ss_pred HHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--C
Confidence 555554431 123344445555556666666666555543 24455666666666667777777766666541 2
Q ss_pred CCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHH
Q 038936 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMI 232 (476)
Q Consensus 156 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~ 232 (476)
+.+...+..+...+...|+++.|.+.++.+.+.+ +.+..++..+...+.+.|+.++|..+++++.+. +...+..++
T Consensus 496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 574 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALA 574 (899)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHH
Confidence 2233445555556666666666666666666543 344556666666666666666666666666332 233455566
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChh
Q 038936 233 GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312 (476)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 312 (476)
..+...|++++|..+++++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+..++...|+++
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 652 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYA 652 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH
Confidence 66666666777776666666543 4455566666666667777777777777666554 444555666666666777777
Q ss_pred hHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 313 NSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 313 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
+|...++++.+ .+..++..++..+...|++++|..+++.+.+.+ +++...+..++..+...|++++|.+.++++..
T Consensus 653 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 653 KAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77776666553 234456666666666666666666666666553 33445555566666666666666666666664
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-C-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 038936 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-P-MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYV 467 (476)
Q Consensus 390 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 467 (476)
. .|+..++..++.++.+.|++++|.+.++++ . .+.+...+..++..+...|++++|...|+++++..|+++.++.
T Consensus 732 ~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 808 (899)
T TIGR02917 732 R---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLN 808 (899)
T ss_pred h---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3 333455555666666666666666666654 2 2234455566666666666666666666666666666666666
Q ss_pred HHHHhhh
Q 038936 468 TMANIYA 474 (476)
Q Consensus 468 ~l~~~y~ 474 (476)
.++++|.
T Consensus 809 ~l~~~~~ 815 (899)
T TIGR02917 809 NLAWLYL 815 (899)
T ss_pred HHHHHHH
Confidence 6666553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-25 Score=225.60 Aligned_cols=462 Identities=12% Similarity=0.096 Sum_probs=300.8
Q ss_pred hhhhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH---------------
Q 038936 3 DILCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS--------------- 64 (476)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------- 64 (476)
+.....++.+.|.+.++++. +.++..+..++..+.+.|+.++|.+.++++.+.. |+...+
T Consensus 36 ~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 36 RLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred HHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchh
Confidence 34557788999999998874 6788888889999999999999999999998865 333222
Q ss_pred --HHHHHHHHhcCChHHHHHHHHHcccccchHHH----HHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHh
Q 038936 65 --NCLLDMYAKCGNISDAQTLFDEMQERDVCSYN----TMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVR 135 (476)
Q Consensus 65 --~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~ 135 (476)
..+...+...|++++|++.|+.+.+.++.... .........|+.++|.+.++++.+. ++..+..+...+..
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFS 193 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Confidence 23344677889999999999998753221111 1111223458999999999988864 44567788888888
Q ss_pred cCChhHHHHHHHHHHhccCC-------------------------------CCCchHH---------------------H
Q 038936 136 YNQPIEALDLYRMMQNFENS-------------------------------VSNKFTL---------------------S 163 (476)
Q Consensus 136 ~~~~~~a~~~~~~~~~~~~~-------------------------------~~~~~~~---------------------~ 163 (476)
.|++++|++.++++...... .|+.... .
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~ 273 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR 273 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence 99999999999887541110 0111000 0
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccch-----hhHH---------
Q 038936 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV-----VSWT--------- 229 (476)
Q Consensus 164 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~--------- 229 (476)
.....+...|++++|...+++.++.. |.+..++..+...+.+.|++++|+..|++..+.++ ..|.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 11223445678888888888887764 45677788888888888888888888888754221 1111
Q ss_pred ---HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhh
Q 038936 230 ---AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306 (476)
Q Consensus 230 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 306 (476)
.....+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.++++.+.. +.+...+..+...|.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 12345677888888888888888764 3455566667778888888888888888888764 344445555555553
Q ss_pred hcCChhhHHHHHccCCCCC------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 038936 307 KCGNVENSKKVFNGMPRPD------------LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374 (476)
Q Consensus 307 ~~~~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (476)
.++.++|..+++.+.... ...+..+...+...|++++|++.+++.++.. +-+...+..+...+...
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 345566666665544211 1123344555666777777777777776643 12344555666667777
Q ss_pred CchhhHHHHHHHHHHhcCCCCChhhHHHH--------------------------------------------HHHHHhc
Q 038936 375 GLVDKGLQYFHSIKEKHGLTYTADHYACI--------------------------------------------VDLLARS 410 (476)
Q Consensus 375 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------------------------------------~~~~~~~ 410 (476)
|++++|...++++.+.. +.+...+..+ +..+...
T Consensus 509 G~~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred CCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 77777777777766431 2223223222 2333444
Q ss_pred CChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 411 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
|+.++|+++++.- +++...+..+...+...|++++|+..|+++++.+|+|+.++..++.+|..
T Consensus 587 G~~~eA~~~l~~~--p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 587 GKEAEAEALLRQQ--PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIA 649 (1157)
T ss_pred CCHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4444454444422 12334556667777777888888888888888888888888888777753
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-24 Score=219.79 Aligned_cols=460 Identities=11% Similarity=0.070 Sum_probs=323.1
Q ss_pred hhhhcCCHHHHHHHHHhcC---CCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 038936 4 ILCNQRRLKEALQILHQIS---HPSPSIYSSL-IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD 79 (476)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 79 (476)
.+.+.|++++|++.|+.+. +++...-... .......|+.++|.+.++++.+.. +.+...+..+...+...|+.++
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~e 199 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDE 199 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHH
Confidence 4677889999999888874 3333211111 122234588888888888888864 3356667777788888888888
Q ss_pred HHHHHHHcccc------------------------------------cchHH---------------------HHHHHHH
Q 038936 80 AQTLFDEMQER------------------------------------DVCSY---------------------NTMISGF 102 (476)
Q Consensus 80 A~~~~~~~~~~------------------------------------~~~~~---------------------~~l~~~~ 102 (476)
|+..++++.+. +.... ......+
T Consensus 200 Al~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~ 279 (1157)
T PRK11447 200 GFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAA 279 (1157)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 88887765320 00000 0123456
Q ss_pred HhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHH------------HHHHH
Q 038936 103 TKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTL------------SSVLS 167 (476)
Q Consensus 103 ~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~~ll~ 167 (476)
...|++++|...|++..+. +...+..+..++.+.|++++|+..|++..+..+..+....+ .....
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 6788888888888887652 55677788888888888888888888887633322221111 12234
Q ss_pred HHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc--c-hhhHHH--------------
Q 038936 168 AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR--D-VVSWTA-------------- 230 (476)
Q Consensus 168 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~-~~~~~~-------------- 230 (476)
.+.+.|++++|...++++++.. +.+...+..+...+...|++++|++.|+++.+. + ...+..
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~ 438 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKAL 438 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHH
Confidence 5677888888888888888764 455667777888888888888888888887542 1 222222
Q ss_pred ----------------------------HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHH
Q 038936 231 ----------------------------MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282 (476)
Q Consensus 231 ----------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 282 (476)
+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2334556788888888888887754 33455666777778888888888888
Q ss_pred HHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCC----Ch---------hhHHHHHHHHHhcCChHHHHHHH
Q 038936 283 HGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP----DL---------VSWTSLIAGYAQNGMPDKALEYF 349 (476)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~~~~A~~~~ 349 (476)
++.+.+.. +.++..+..+...+...++.++|...++.+... +. ..+..+...+...|++++|+.++
T Consensus 518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 88887654 444555555556667788888888888877631 11 11233456688889999999888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-
Q 038936 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP- 427 (476)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 427 (476)
+. .+++...+..+...+.+.|++++|++.|+++.+. .|.+...+..++.+|...|++++|++.++.+ ...|
T Consensus 597 ~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 597 RQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred Hh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 72 2455566777888999999999999999999975 3556788899999999999999999999986 3444
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch------hHHHHHHhhh
Q 038936 428 DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA------TYVTMANIYA 474 (476)
Q Consensus 428 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~y~ 474 (476)
+...+..++.++...|++++|.+.++++++..|+++. .+..++.++.
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~ 722 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEA 722 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHH
Confidence 4556777888888999999999999999998776543 5555666654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-25 Score=192.68 Aligned_cols=432 Identities=13% Similarity=0.137 Sum_probs=347.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccc---cchHHHHHHHHHHhc
Q 038936 29 YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER---DVCSYNTMISGFTKG 105 (476)
Q Consensus 29 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 105 (476)
...+..-..+.|++.+|++.-...-..+ +.+......+-..+....+.+....--....+. ..++|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 3445556667888888888766554443 122333333445555666666655544443332 347899999999999
Q ss_pred CCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHH-HHHHHHhhhhhhhHHHH
Q 038936 106 GSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS-VLSAVSAIQCLRLGKEI 181 (476)
Q Consensus 106 g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~ 181 (476)
|++++|+.+++.+.+. .+..|..+..++...|+.+.|...|.+..+ ..|+.....+ +-......|...+|..-
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999988764 456788999999999999999999998876 5565544333 33344557888999888
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccch---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038936 182 HGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV---VSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258 (476)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 258 (476)
+.+.++.. +--...|..|...+...|+...|+..|++.++-|+ ..|..|...|-..+.+++|...|.+..... +.
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn 284 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN 284 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc
Confidence 88887664 33345788899999999999999999999977554 468889999999999999999999887753 33
Q ss_pred CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHHH
Q 038936 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIAG 335 (476)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~ 335 (476)
....+..+...|...|..+.|+..+++..+.. +.-+..|+.|..++...|++.+|...+.+... | ...+.+.|...
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 45567677777889999999999999999875 56688999999999999999999999999885 3 45688899999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCh
Q 038936 336 YAQNGMPDKALEYFELLLKSGTQPDH-IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT-ADHYACIVDLLARSGRF 413 (476)
Q Consensus 336 ~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 413 (476)
|...|.+++|..+|....+ +.|.. ...+.|...|-.+|++++|+..|++++. +.|+ ...|..++..|...|+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhH
Confidence 9999999999999999988 55654 4688899999999999999999999984 5665 56789999999999999
Q ss_pred hhHHHHHhhC-CCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 414 HEAEDVISKM-PMKPD-KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 414 ~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
+.|++.+.++ ...|. ...++.+...|...|+..+|++.|++++++.|+.+.++-+|+-.
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence 9999999996 66775 45889999999999999999999999999999999999888754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-22 Score=196.05 Aligned_cols=448 Identities=10% Similarity=0.042 Sum_probs=308.7
Q ss_pred hcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 038936 7 NQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83 (476)
Q Consensus 7 ~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (476)
..|++++|+..|+.+. +.++.++..+...+...|++++|+..+++..+.. |+...|..++. ..+++++|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La---~i~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLA---AIPVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHH---HhccChhHHHH
Confidence 4599999999999985 6778899999999999999999999999999964 44444444332 22999999999
Q ss_pred HHHccc--c-cchHHHHHHHH--------HHhcCCHHHHHHHHhcCCCCC--cch-HHHHHHHHHhcCChhHHHHHHHHH
Q 038936 84 FDEMQE--R-DVCSYNTMISG--------FTKGGSLEQARNLFDEMPQRD--NFS-WTAMISGYVRYNQPIEALDLYRMM 149 (476)
Q Consensus 84 ~~~~~~--~-~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~~--~~~-~~~l~~~~~~~~~~~~a~~~~~~~ 149 (476)
++++.. | +..++..+... |.+.+...++++ .+...++ +.+ ...+...|.+.|++++|++++.++
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999985 3 45666666665 777766666666 3333444 333 334488999999999999999999
Q ss_pred HhccCCCCCchHHHHHHHHHHh-hhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc-----c
Q 038936 150 QNFENSVSNKFTLSSVLSAVSA-IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD-----R 223 (476)
Q Consensus 150 ~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~ 223 (476)
.+. .+.+......+-.++.. .++ +.+..+++. .++.+......++..|.+.|+.++|.++++++.. |
T Consensus 209 ~k~--~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 209 RQQ--NTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred Hhc--CCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 872 22233334455555555 355 666666432 3335677777888888888888888888877621 0
Q ss_pred --------------------------------------------------------------------------------
Q 038936 224 -------------------------------------------------------------------------------- 223 (476)
Q Consensus 224 -------------------------------------------------------------------------------- 223 (476)
T Consensus 282 ~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 361 (987)
T PRK09782 282 QEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEA 361 (987)
T ss_pred ccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHH
Confidence
Q ss_pred -------------chhhHHHHHHHHHhcCChhHHHHHHHHHHHc------------------------------------
Q 038936 224 -------------DVVSWTAMIGRYFQEGRREEGFALFSELIKS------------------------------------ 254 (476)
Q Consensus 224 -------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------------------ 254 (476)
+......+.-...+.|+.++|.++|++....
T Consensus 362 ~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 441 (987)
T PRK09782 362 LRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP 441 (987)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence 0000000001112334444444444332210
Q ss_pred ---------------------------CC-CC--CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 038936 255 ---------------------------GI-RP--NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304 (476)
Q Consensus 255 ---------------------------~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (476)
+. ++ +...+..+..++.. ++.++|...+....... |+......+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~a 518 (987)
T PRK09782 442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQ 518 (987)
T ss_pred cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHH
Confidence 00 12 34455556655555 78888888887777663 444443344555
Q ss_pred hhhcCChhhHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHH
Q 038936 305 YSKCGNVENSKKVFNGMPR--PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382 (476)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 382 (476)
+...|++++|...|+++.. |+...+..+...+.+.|++++|...+++.++.+ +++...+..+.......|++++|..
T Consensus 519 l~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHH
Confidence 5788999999999987664 445556677778888999999999998888754 2233333334444556689999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
.++++.+. .|+...+..++.++.+.|++++|+..++++ ...| +...+..++.++...|++++|+..++++++++|
T Consensus 598 ~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 598 DLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 98888854 556778888888889999999999988885 4555 455777888888888999999999999999999
Q ss_pred CCchhHHHHHHhhhc
Q 038936 461 ENPATYVTMANIYAS 475 (476)
Q Consensus 461 ~~~~~~~~l~~~y~~ 475 (476)
+++.++.+|+.+|..
T Consensus 675 ~~~~a~~nLA~al~~ 689 (987)
T PRK09782 675 DDPALIRQLAYVNQR 689 (987)
T ss_pred CCHHHHHHHHHHHHH
Confidence 988888888888753
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-24 Score=186.44 Aligned_cols=425 Identities=16% Similarity=0.166 Sum_probs=345.7
Q ss_pred hhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 038936 5 LCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 81 (476)
+.+.|++.+|.+.-..+. +.+....-.+-..+.+..+.+.....-....+.. +.-.++|..+...+-..|++++|+
T Consensus 58 ~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al 136 (966)
T KOG4626|consen 58 LYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDAL 136 (966)
T ss_pred HHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHH
Confidence 457789999988877765 2223333333455666667776666555555543 346789999999999999999999
Q ss_pred HHHHHccc--c-cchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHH---HHHHHHHhcCChhHHHHHHHHHHhccCC
Q 038936 82 TLFDEMQE--R-DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWT---AMISGYVRYNQPIEALDLYRMMQNFENS 155 (476)
Q Consensus 82 ~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 155 (476)
.+++.+.+ | ....|..+..++...|+.+.|...|....+-|+..+- .+...+-..|+.++|...|.+... .
T Consensus 137 ~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~---~ 213 (966)
T KOG4626|consen 137 ALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE---T 213 (966)
T ss_pred HHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHh---h
Confidence 99999886 3 4578999999999999999999999998876654332 334455567999999999988875 3
Q ss_pred CCC-chHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc--c-chhhHHHH
Q 038936 156 VSN-KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD--R-DVVSWTAM 231 (476)
Q Consensus 156 ~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 231 (476)
.|. ...|+.+--.+...|+...+.+.|++..+.. |.-...|..|...|...+.+++|+..+.+... | ....+..+
T Consensus 214 qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNl 292 (966)
T KOG4626|consen 214 QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNL 292 (966)
T ss_pred CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccce
Confidence 343 4567788888889999999999999998764 33356888999999999999999999998843 3 35678888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCCh
Q 038936 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311 (476)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (476)
...|..+|..+-|++.|++.++.. +.-...|+.+..++-..|++.+|...+....... +......+.|...|...|.+
T Consensus 293 a~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 293 ACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred EEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccc
Confidence 888999999999999999999864 3335789999999999999999999999999885 56677888999999999999
Q ss_pred hhHHHHHccCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCchhhHHHHHHHH
Q 038936 312 ENSKKVFNGMPR--PD-LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH-IVFVGVLTACTHAGLVDKGLQYFHSI 387 (476)
Q Consensus 312 ~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 387 (476)
++|..+|....+ |+ ....+.|...|-++|+.++|+..+++.+. +.|+. ..|+.+...|-..|+.+.|++.+.++
T Consensus 371 e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 371 EEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred hHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 999999999886 33 34788999999999999999999999998 67775 47899999999999999999999999
Q ss_pred HHhcCCCCC-hhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHH-HHHHHHHHHHh
Q 038936 388 KEKHGLTYT-ADHYACIVDLLARSGRFHEAEDVISKM-PMKPDKF-LWASLLGGCRI 441 (476)
Q Consensus 388 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~ 441 (476)
+. +.|. .+.++.|+.+|...|++.+|+.-++.+ +.+||.+ .+..++.++.-
T Consensus 449 I~---~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 449 IQ---INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred Hh---cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 95 3554 567889999999999999999999995 7888754 67777766543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-21 Score=183.21 Aligned_cols=419 Identities=12% Similarity=0.013 Sum_probs=263.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc--c-cchHHHHHHHHHHhc
Q 038936 29 YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE--R-DVCSYNTMISGFTKG 105 (476)
Q Consensus 29 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~ 105 (476)
+......+.+.|++++|...|++.++. .|+...|..+..+|.+.|++++|+..++...+ | +...|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 445667788889999999999988874 46777888888888899999999999988775 2 446788888899999
Q ss_pred CCHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHH
Q 038936 106 GSLEQARNLFDEMPQRDN---FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182 (476)
Q Consensus 106 g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 182 (476)
|++++|..-|......+. .....++..+.. ..+........... +++...+..+.. +...........-+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK--PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC--CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 999999887765432211 111111111111 12222222222111 111111111111 11111111111111
Q ss_pred HHHHHcCCCch-HHHHHHHHHH---HHcCCCHHHHHHHHHhhccc------chhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038936 183 GYIMRTGFDSD-EVVWSALSDM---YGKCGSINEARQIFDKMVDR------DVVSWTAMIGRYFQEGRREEGFALFSELI 252 (476)
Q Consensus 183 ~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 252 (476)
....+ ..+. ...+..+... ....+++++|.+.|+...+. ....|..+...+...|++++|...+++.+
T Consensus 281 ~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 281 EDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11000 0111 0011111111 12346778888888877542 23456677777778888888888888877
Q ss_pred HcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--C-ChhhH
Q 038936 253 KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--P-DLVSW 329 (476)
Q Consensus 253 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~ 329 (476)
+.. +.....|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++..+ | +...+
T Consensus 359 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~ 436 (615)
T TIGR00990 359 ELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSH 436 (615)
T ss_pred HcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHH
Confidence 753 2234566667777778888888888888877764 55567777788888888888888888887764 3 34566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC-hhh-------HH
Q 038936 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT-ADH-------YA 401 (476)
Q Consensus 330 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~-------~~ 401 (476)
..+...+.+.|++++|+..|++.++.. +.+...+..+...+...|++++|++.|+++.+. .|+ ... +.
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHH
Confidence 677778888888888888888887743 334567777788888888888888888887753 221 111 11
Q ss_pred HHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 038936 402 CIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 402 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 464 (476)
.....+...|++++|.+.++++ ...|+ ...+..++..+...|++++|+..|++++++.+....
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 1222334468888888888874 44553 346777888888888888888888888888775443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-20 Score=179.06 Aligned_cols=410 Identities=11% Similarity=0.031 Sum_probs=294.4
Q ss_pred hhhhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 038936 4 ILCNQRRLKEALQILHQIS--HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81 (476)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 81 (476)
.+.+.|++++|+..|+++. .|++..|..+..++.+.|++++|...++..++.+ +.+...+..+..+|...|++++|+
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~ 214 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADAL 214 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5778899999999999985 7788899999999999999999999999999865 235678888999999999999999
Q ss_pred HHHHHccccc---chHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCC
Q 038936 82 TLFDEMQERD---VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158 (476)
Q Consensus 82 ~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 158 (476)
.-|..+...+ ......++..+........+...++.-. .+...+..+.. +...........-+..... ..|.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~ 289 (615)
T TIGR00990 215 LDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE---LDEE 289 (615)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcccc---cccc
Confidence 8887654321 1111222222222112233444443322 22233333333 2222222222222221111 1111
Q ss_pred c-hHHHHHHHH---HHhhhhhhhHHHHHHHHHHcC--CCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccc---hhhHH
Q 038936 159 K-FTLSSVLSA---VSAIQCLRLGKEIHGYIMRTG--FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD---VVSWT 229 (476)
Q Consensus 159 ~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~ 229 (476)
. ..+..+... ....+.++.|.+.++..++.+ .+.....+..+...+...|++++|+..+++..+.+ ...|.
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 369 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYI 369 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 1 111111111 123467899999999998765 23445678888999999999999999999986533 44678
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcC
Q 038936 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309 (476)
Q Consensus 230 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 309 (476)
.+...+...|++++|...|++..+.. +.+...+..+...+...|+++.|...++...+.. +.+...+..+..++.+.|
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCC
Confidence 88889999999999999999998864 4456788888888999999999999999999875 556777888899999999
Q ss_pred ChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHhccCchhhH
Q 038936 310 NVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI------VFVGVLTACTHAGLVDKG 380 (476)
Q Consensus 310 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a 380 (476)
++++|+..|+...+ .++..++.+...+...|++++|++.|++..+.....+.. .+...+..+...|++++|
T Consensus 448 ~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 448 SIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999998764 356788999999999999999999999998854221111 112122233446999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
.++++++... .+.+...+..++.++.+.|++++|++.|+++
T Consensus 528 ~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 528 ENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999998864 2344556888999999999999999999986
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-20 Score=183.01 Aligned_cols=399 Identities=11% Similarity=0.010 Sum_probs=250.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc--c-cchHHHHHHHHH
Q 038936 26 PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE--R-DVCSYNTMISGF 102 (476)
Q Consensus 26 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 102 (476)
+....-.+.+....|+.++|++++....... +.+...+..+...+...|++++|...|++..+ | +...+..++..+
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3333344445555566666665555555421 22333455555555555666666666555432 2 233444555555
Q ss_pred HhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHH
Q 038936 103 TKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179 (476)
Q Consensus 103 ~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 179 (476)
...|++++|...++++.+. +.. +..+..++...|++++|+..++++.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al----------------------------- 143 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQAL----------------------------- 143 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH-----------------------------
Confidence 5555555555555554431 222 4444445555555555555555554
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchh--------hHHHHHHHHH-----hcCCh---hH
Q 038936 180 EIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV--------SWTAMIGRYF-----QEGRR---EE 243 (476)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~l~~~~~-----~~~~~---~~ 243 (476)
+.. |.+...+..+..++...|..+.|+..++.... ++. ....++.... ..+++ ++
T Consensus 144 -------~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~ 214 (765)
T PRK10049 144 -------PRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADR 214 (765)
T ss_pred -------HhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHH
Confidence 332 33444445556666666777777777766544 111 1111222221 12233 67
Q ss_pred HHHHHHHHHHc-CCCCCHh-hHH----HHHHHHhccccHHHHHHHHHHHHHhCCC-CchhhHHHHHHHhhhcCChhhHHH
Q 038936 244 GFALFSELIKS-GIRPNAF-TFA----GVLNACADHAAEELGKQVHGYMTRIGYD-PYSFAASALVHMYSKCGNVENSKK 316 (476)
Q Consensus 244 a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~ 316 (476)
|+..++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|+.
T Consensus 215 Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 215 ALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHH
Confidence 77788877754 1223221 111 1133445668889999999988877522 221 22235678888999999999
Q ss_pred HHccCCCCC-------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CCcH---HHHHHHHHHHhccC
Q 038936 317 VFNGMPRPD-------LVSWTSLIAGYAQNGMPDKALEYFELLLKSGT-----------QPDH---IVFVGVLTACTHAG 375 (476)
Q Consensus 317 ~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~~ 375 (476)
.|+++.+.+ ......+..++...|++++|...++++.+... .|+. ..+..+...+...|
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 988876422 23455566778899999999999999887531 1232 24456777888999
Q ss_pred chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHHHHhcCChHHHHHHHH
Q 038936 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGGCRIHGNLDLAKRAAE 453 (476)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 453 (476)
+.++|++.++++... .|.+...+..++.++...|++++|++.++++ ...|+ ...+...+..+...|++++|+..++
T Consensus 374 ~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 374 DLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999874 4667788999999999999999999999996 55665 5677777778889999999999999
Q ss_pred HHHHcCCCCchhHH
Q 038936 454 ALFEIEPENPATYV 467 (476)
Q Consensus 454 ~~~~~~p~~~~~~~ 467 (476)
++++..|+++.+..
T Consensus 452 ~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 452 DVVAREPQDPGVQR 465 (765)
T ss_pred HHHHhCCCCHHHHH
Confidence 99999999986543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-19 Score=177.40 Aligned_cols=423 Identities=10% Similarity=0.007 Sum_probs=303.8
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccc--hHHHHHHHHHHhcCCHHHHHHH
Q 038936 37 RQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDV--CSYNTMISGFTKGGSLEQARNL 114 (476)
Q Consensus 37 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~ 114 (476)
...|++++|...|+...+.... +..++..+...|...|+.++|+..+++..+.++ ..|..++. ..+++++|..+
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La---~i~~~~kA~~~ 130 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLA---AIPVEVKSVTT 130 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH---HhccChhHHHH
Confidence 4459999999999999997633 578888999999999999999999999886332 33333332 22999999999
Q ss_pred HhcCCCC---CcchHHHHHHH--------HHhcCChhHHHHHHHHHHhccCCCCCchHHHHH-HHHHHhhhhhhhHHHHH
Q 038936 115 FDEMPQR---DNFSWTAMISG--------YVRYNQPIEALDLYRMMQNFENSVSNKFTLSSV-LSAVSAIQCLRLGKEIH 182 (476)
Q Consensus 115 ~~~~~~~---~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~ 182 (476)
++++... +..++..+... |.+. ++|.+.++ ... ....|+....... ...+...++++.+.+.+
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~-~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DAT-FAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-Hhh-hCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 9999864 34455555554 5555 55555554 322 3344445555555 88999999999999999
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHc-CCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCH
Q 038936 183 GYIMRTGFDSDEVVWSALSDMYGK-CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIR-PNA 260 (476)
Q Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 260 (476)
+.+.+.+ +.+......+..+|.. .++ +++..+++...+.++..+..++..|.+.|+.++|..++.++...... |..
T Consensus 206 ~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 206 NEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 9999987 4556666777778887 477 89999887766678888999999999999999999888776432111 111
Q ss_pred hhHHHH------------------------------HH------------------------------------------
Q 038936 261 FTFAGV------------------------------LN------------------------------------------ 268 (476)
Q Consensus 261 ~~~~~l------------------------------~~------------------------------------------ 268 (476)
.++..+ +.
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALR 363 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence 110000 00
Q ss_pred ---------------------HHhccccHHHHHHHHHHHHH---------------------------------------
Q 038936 269 ---------------------ACADHAAEELGKQVHGYMTR--------------------------------------- 288 (476)
Q Consensus 269 ---------------------~~~~~~~~~~a~~~~~~~~~--------------------------------------- 288 (476)
.....|+.++|.++++....
T Consensus 364 ~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 364 LARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 00112233333333322111
Q ss_pred -----------------------h-CC-CC--chhhHHHHHHHhhhcCChhhHHHHHccCCC--CChhhHHHHHHHHHhc
Q 038936 289 -----------------------I-GY-DP--YSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLVSWTSLIAGYAQN 339 (476)
Q Consensus 289 -----------------------~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~ 339 (476)
. +. ++ +...+..+..++.. ++.++|...+.+... |+......+...+...
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~ 522 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQV 522 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 0 00 22 55667778877776 889899997777664 5543333334455689
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 038936 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 419 (476)
|++++|+..|+++... +|+...+..+...+...|+.++|..+++++... .++....+..+...+.+.|++++|...
T Consensus 523 Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 523 EDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred CCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999998664 455555667788889999999999999999864 233444444455555667999999999
Q ss_pred HhhC-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 420 ISKM-PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 420 ~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
++++ ...|+...+..++.++.+.|++++|+..++++++++|+++.++.+++.++..
T Consensus 599 ~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~ 655 (987)
T PRK09782 599 LTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD 655 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9996 6678888999999999999999999999999999999999999999988754
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-21 Score=176.21 Aligned_cols=260 Identities=15% Similarity=0.173 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhhcccc-------hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHH
Q 038936 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRD-------VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266 (476)
Q Consensus 194 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 266 (476)
..++..+...+...|++++|..+++.+.... ...+..++..|...|++++|..+|.++.+.. +++..++..+
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~l 147 (389)
T PRK11788 69 VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQL 147 (389)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHH
Confidence 3444555555555555555555555543311 1234455555555666666666666555432 3344455555
Q ss_pred HHHHhccccHHHHHHHHHHHHHhCCCCc----hhhHHHHHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHHHHHhc
Q 038936 267 LNACADHAAEELGKQVHGYMTRIGYDPY----SFAASALVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIAGYAQN 339 (476)
Q Consensus 267 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~ 339 (476)
+..+...|++++|.+.++.+.+.+..+. ...+..+...+...|++++|...|+++.+ | +...+..++..+.+.
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 148 LEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQ 227 (389)
T ss_pred HHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHC
Confidence 5566666666666666666555432211 11234556667777777777777777654 2 345677788889999
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 038936 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 419 (476)
|++++|.++++++.+.+......++..++.+|...|++++|.+.++++.+. .|+...+..++..+.+.|++++|.++
T Consensus 228 g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 228 GDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred CCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999988643333456788889999999999999999998864 56666778899999999999999999
Q ss_pred HhhC-CCCCcHHHHHHHHHHHHh---cCChHHHHHHHHHHHH
Q 038936 420 ISKM-PMKPDKFLWASLLGGCRI---HGNLDLAKRAAEALFE 457 (476)
Q Consensus 420 ~~~~-~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 457 (476)
++++ ...|+...+..++..+.. .|+.+++...++++++
T Consensus 305 l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 305 LREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 9875 667888888887777664 4688898888888876
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-20 Score=177.92 Aligned_cols=342 Identities=10% Similarity=0.011 Sum_probs=172.5
Q ss_pred hcCChHHHHHHHHHccc------ccchHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHH
Q 038936 73 KCGNISDAQTLFDEMQE------RDVCSYNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEAL 143 (476)
Q Consensus 73 ~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~ 143 (476)
+..+++...-+|....+ .+......++..+.+.|++++|..+++..... +...+..++.+....|++++|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHH
Confidence 55566665555555443 12233444555666667777777766665432 3344555555556667777777
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc-
Q 038936 144 DLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD- 222 (476)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 222 (476)
..|+++... .+.+...+..+...+...|+++.|...++.+.+.. +.+...+..++..+...|++++|...++.+..
T Consensus 97 ~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 97 QVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 777666641 12223344445555556666666666666655442 33444555555566666666666665555422
Q ss_pred -cch-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHH
Q 038936 223 -RDV-VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300 (476)
Q Consensus 223 -~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 300 (476)
|+. ..+..+ ..+...|++++|...++.+.+....++......+...+...|++++|...++.+.+.. +.+...+..
T Consensus 174 ~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~ 251 (656)
T PRK15174 174 VPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRS 251 (656)
T ss_pred CCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 221 122222 2345556666666666655544322233333333444555566666666665555543 334444455
Q ss_pred HHHHhhhcCChhh----HHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 038936 301 LVHMYSKCGNVEN----SKKVFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373 (476)
Q Consensus 301 l~~~~~~~~~~~~----a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 373 (476)
+...+...|++++ |...|+++.+ | +...+..+...+...|++++|+..+++..+.. +.+...+..+..++..
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~ 330 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQ 330 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 5555555555553 4555554442 2 23344555555555555555555555555432 1122334444455555
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 374 AGLVDKGLQYFHSIKEKHGLTYTA-DHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 374 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
.|++++|++.++++... .|+. ..+..++.++...|+.++|++.|+++
T Consensus 331 ~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 331 VGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred CCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555555555555532 2221 22223344455555555555555553
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-19 Score=168.36 Aligned_cols=433 Identities=11% Similarity=0.059 Sum_probs=321.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHcccccc-hHHHHH--H
Q 038936 25 SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV--FISNCLLDMYAKCGNISDAQTLFDEMQERDV-CSYNTM--I 99 (476)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l--~ 99 (476)
.+.+-..-+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++...|+. ..+..+ .
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA 109 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAA 109 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 44444444455678999999999999998864 443 344 778888888999999999999887643 344444 5
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhh
Q 038936 100 SGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLR 176 (476)
Q Consensus 100 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 176 (476)
..+...|++++|.++|+++.+. ++..+..++..+...++.++|++.++++.. ..|+...+..++..+...++..
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~---~dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE---RDPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc---cCcchHHHHHHHHHHHhcchHH
Confidence 5788889999999999998864 455666777888899999999999998876 4555555655544554456665
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc-chhh--H------HHHHHHH---H--hcCC--
Q 038936 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVS--W------TAMIGRY---F--QEGR-- 240 (476)
Q Consensus 177 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--~------~~l~~~~---~--~~~~-- 240 (476)
.|.+.++++.+.. |.+...+..+..+..+.|-...|.++..+-+.- +... + ..+++.- . ..++
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 6999999998875 667788888899999999999999888765421 0000 1 0111100 0 1122
Q ss_pred -hhHHHHHHHHHHHc-CCCCCH-hhH----HHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhh
Q 038936 241 -REEGFALFSELIKS-GIRPNA-FTF----AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN 313 (476)
Q Consensus 241 -~~~a~~~~~~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 313 (476)
.+.|+.-++.+... +..|.. ..| .-.+.++...++..+++..++.+...+.+....+...+..+|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 34455555555542 112322 222 23345677889999999999999998877677788899999999999999
Q ss_pred HHHHHccCCCC---------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CC--cHH-HHHHHHHH
Q 038936 314 SKKVFNGMPRP---------DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT-----------QP--DHI-VFVGVLTA 370 (476)
Q Consensus 314 a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~--~~~-~~~~l~~~ 370 (476)
|..+|+.+..+ +......|.-+|...+++++|..+++++.+... .| |.. .+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 99999987542 222346788999999999999999999988421 12 222 23445677
Q ss_pred HhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHH
Q 038936 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 448 (476)
+...|+..+|++.++++... -|-|......++.++...|.+.+|.+.++.+ ...| +..+....+.++...|++++|
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHH
Confidence 88999999999999999864 5778888999999999999999999999876 4456 556778888888999999999
Q ss_pred HHHHHHHHHcCCCCchhH
Q 038936 449 KRAAEALFEIEPENPATY 466 (476)
Q Consensus 449 ~~~~~~~~~~~p~~~~~~ 466 (476)
..+.+.+++..|+++.+-
T Consensus 504 ~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 504 ELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHHHhhCCCchhHH
Confidence 999999999999998554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-21 Score=174.25 Aligned_cols=288 Identities=13% Similarity=0.099 Sum_probs=138.6
Q ss_pred HhcCChHHHHHHHHHccc--c-cchHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-------cchHHHHHHHHHhcCChhH
Q 038936 72 AKCGNISDAQTLFDEMQE--R-DVCSYNTMISGFTKGGSLEQARNLFDEMPQRD-------NFSWTAMISGYVRYNQPIE 141 (476)
Q Consensus 72 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~ 141 (476)
...|++++|...|+++.+ | +..++..+...+...|++++|..+++.+.... ...+..+...+.+.|++++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 344555555555555543 1 22344444555555555555555554443321 1234445555555566666
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCch----HHHHHHHHHHHHcCCCHHHHHHHH
Q 038936 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD----EVVWSALSDMYGKCGSINEARQIF 217 (476)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 217 (476)
|..+|+++.+. .+++..++..++..+...|++++|.+.++.+.+.+..+. ...+..++..+.+.|++++|...|
T Consensus 126 A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 126 AEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 66666555531 222334444444445555555555555554444331111 112344555555666666666666
Q ss_pred Hhhccc---chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc
Q 038936 218 DKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294 (476)
Q Consensus 218 ~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 294 (476)
+++.+. +...+..+...+.+.|++++|...++++.+.+......++..+..++...|+++.|...++.+.+..
T Consensus 204 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---- 279 (389)
T PRK11788 204 KKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY---- 279 (389)
T ss_pred HHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 655331 2234445555566666666666666665543211112334444455555555555555555544432
Q ss_pred hhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc-
Q 038936 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH- 373 (476)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 373 (476)
|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+..
T Consensus 280 -----------------------------p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 280 -----------------------------PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAE 328 (389)
T ss_pred -----------------------------CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhc
Confidence 33333344455555555555555555555553 3555555544444332
Q ss_pred --cCchhhHHHHHHHHHHhcCCCCCh
Q 038936 374 --AGLVDKGLQYFHSIKEKHGLTYTA 397 (476)
Q Consensus 374 --~~~~~~a~~~~~~~~~~~~~~~~~ 397 (476)
.|+.+++...++++.++ ++.|++
T Consensus 329 ~~~g~~~~a~~~~~~~~~~-~~~~~p 353 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVGE-QLKRKP 353 (389)
T ss_pred cCCccchhHHHHHHHHHHH-HHhCCC
Confidence 33555555555555543 334433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-20 Score=175.16 Aligned_cols=352 Identities=10% Similarity=0.004 Sum_probs=207.1
Q ss_pred hcCCHHHHHHHHhcCCCC------CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhh
Q 038936 104 KGGSLEQARNLFDEMPQR------DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177 (476)
Q Consensus 104 ~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 177 (476)
+..+|+.-.-+|....+. +......++..+.+.|++++|+.+++..... .+-+......+..+....|+++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHH
Confidence 444555444444444321 2233444556666677777777777766641 22222333444445556677777
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc--c-chhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038936 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD--R-DVVSWTAMIGRYFQEGRREEGFALFSELIKS 254 (476)
Q Consensus 178 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 254 (476)
|.+.++.+.+.. |.+...+..+...+...|++++|+..+++..+ | +...+..++..+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 777777776654 44555666666777777777777777776644 2 3345666666777777777777777666554
Q ss_pred CCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHH
Q 038936 255 GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTS 331 (476)
Q Consensus 255 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ 331 (476)
.. .+...+..+ ..+...|++++|...++.+.+....++......+...+...|++++|...++++.+ .+...+..
T Consensus 174 ~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 VP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred CC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 32 122222222 23556677777777777665553223333334445566677777777777766653 23445666
Q ss_pred HHHHHHhcCChHH----HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 038936 332 LIAGYAQNGMPDK----ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407 (476)
Q Consensus 332 l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (476)
+...+...|++++ |+..|++..+.. +.+...+..+...+...|++++|+..++++.+. .+.+...+..++.++
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l 328 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 6666777777664 667777766643 223445666666677777777777777776653 233444566666777
Q ss_pred HhcCChhhHHHHHhhC-CCCCcHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 038936 408 ARSGRFHEAEDVISKM-PMKPDKFL-WASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 408 ~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 463 (476)
.+.|++++|++.++++ ...|+... +..++.++...|++++|+..|+++++..|++.
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 7777777777777665 34454332 33345556666777777777777777766643
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-19 Score=164.76 Aligned_cols=442 Identities=14% Similarity=0.127 Sum_probs=295.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHccc--cc--chHHH
Q 038936 23 HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFK--PGVFISNCLLDMYAKCGNISDAQTLFDEMQE--RD--VCSYN 96 (476)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~ 96 (476)
+.||.+.+.|.+-+.-.|+++.+..+...+...... .-...|-.+.+.|-..|++++|...|.+..+ ++ ...+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 455666666666666666666666666666554211 1123355566666666777777766666554 22 22344
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcC----ChhHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 038936 97 TMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYN----QPIEALDLYRMMQNFENSVSNKFTLSSVLSAV 169 (476)
Q Consensus 97 ~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 169 (476)
-+.+.+++.|+++.+...|+.+.+. +..+...+...|...+ ..++|..++.+... ..+.|...|..+...+
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~--~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE--QTPVDSEAWLELAQLL 424 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh--cccccHHHHHHHHHHH
Confidence 4566666677777777666666543 2334444444444443 33455555555542 2344555555555555
Q ss_pred HhhhhhhhHHHHHH----HHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc-------ch------hhHHHHH
Q 038936 170 SAIQCLRLGKEIHG----YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-------DV------VSWTAMI 232 (476)
Q Consensus 170 ~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~------~~~~~l~ 232 (476)
....-+.. +.++. .+...+.++.+...|.+...+...|++.+|...|...... +. .+-..+.
T Consensus 425 e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 43333222 43333 3334555566777888888888888888888888776321 11 1223345
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhh-HHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCCh
Q 038936 233 GRYFQEGRREEGFALFSELIKSGIRPNAFT-FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311 (476)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (476)
..+-..++++.|.+.|..+.+. .|.-.. |..+.......+...+|...+......+ ..++..++.+...|.+...+
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhh
Confidence 5666677888888888888775 344333 3333322334567778888888877765 56666777777788888888
Q ss_pred hhHHHHHccCCC-----CChhhHHHHHHHHHh------------cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 038936 312 ENSKKVFNGMPR-----PDLVSWTSLIAGYAQ------------NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374 (476)
Q Consensus 312 ~~a~~~~~~~~~-----~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (476)
..|.+-|..+.+ +|+.+.-.|.+.|.+ .+..++|+++|.+.+... +-|...-+.+.-+++..
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEK 659 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhc
Confidence 888775554432 455555556665543 345678999999998865 45777788888899999
Q ss_pred CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC----CCCCcHHHHHHHHHHHHhcCChHHHHH
Q 038936 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM----PMKPDKFLWASLLGGCRIHGNLDLAKR 450 (476)
Q Consensus 375 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~ 450 (476)
|++..|..+|.++.+.. .....+|..++.+|..+|++-.|+++|+.. ..+.++.+...|..++...|++.+|.+
T Consensus 660 g~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred cCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999863 345567999999999999999999999985 234577788999999999999999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHhh
Q 038936 451 AAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 451 ~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
.+..++.+.|.|+....+++-+.
T Consensus 738 ~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 738 ALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHHHHHhCCccchHHhHHHHHH
Confidence 99999999999999998888764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-19 Score=173.99 Aligned_cols=406 Identities=8% Similarity=-0.025 Sum_probs=258.5
Q ss_pred hhhhhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 038936 2 IDILCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78 (476)
Q Consensus 2 i~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 78 (476)
+.+....|+.++|++++.... +.+...+..+...+...|++++|..++++..+.. +.+...+..+...+...|+++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 356778899999999999985 4555578999999999999999999999998864 335677778888999999999
Q ss_pred HHHHHHHHccc--c-cchHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038936 79 DAQTLFDEMQE--R-DVCSYNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152 (476)
Q Consensus 79 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 152 (476)
+|+..++++.+ | +.. +..+..++...|+.++|...++++.+. +...+..+...+...|..++|++.++....
T Consensus 101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~- 178 (765)
T PRK10049 101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL- 178 (765)
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-
Confidence 99999999875 3 445 888899999999999999999998764 445566778888889999999999987653
Q ss_pred cCCCCCch------HHHHHHHHH-----Hhhhhh---hhHHHHHHHHHHc-CCCchHH-H----HHHHHHHHHcCCCHHH
Q 038936 153 ENSVSNKF------TLSSVLSAV-----SAIQCL---RLGKEIHGYIMRT-GFDSDEV-V----WSALSDMYGKCGSINE 212 (476)
Q Consensus 153 ~~~~~~~~------~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~----~~~l~~~~~~~~~~~~ 212 (476)
.|+.. .....+... ...+.+ +.|.+.++.+.+. ...|+.. . ....+..+...|++++
T Consensus 179 ---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 179 ---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred ---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 33210 111111111 111222 4555555555543 1111110 1 0111223344466666
Q ss_pred HHHHHHhhcccc---hh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHhhHHHHHHHHhccccHHHHHHHHHH
Q 038936 213 ARQIFDKMVDRD---VV-SWTAMIGRYFQEGRREEGFALFSELIKSGIRP---NAFTFAGVLNACADHAAEELGKQVHGY 285 (476)
Q Consensus 213 a~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 285 (476)
|+..|+.+.+.+ +. ....+...|...|++++|...|+++.+..... .......+..++...|++++|...++.
T Consensus 256 A~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 666666664432 11 11123455666666666666666655432110 012233334445555666666666555
Q ss_pred HHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH
Q 038936 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD---LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362 (476)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 362 (476)
+.... ++....+. .....|+ ...+..+...+...|++++|++.++++.... +.+..
T Consensus 336 ~~~~~-P~~~~~~~-------------------~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~ 394 (765)
T PRK10049 336 TINNS-PPFLRLYG-------------------SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQG 394 (765)
T ss_pred HhhcC-CceEeecC-------------------CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 55432 11110000 0000122 1244556677888888888888888888753 34556
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHHHHH
Q 038936 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLL 436 (476)
Q Consensus 363 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 436 (476)
.+..++..+...|++++|++.++++.+. .|.+...+...+..+.+.|++++|..+++++ ...|+......+-
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~ 467 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLA 467 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 7777788888888888888888888864 2445667777777888888888888888886 4455544333333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-18 Score=155.57 Aligned_cols=409 Identities=13% Similarity=0.112 Sum_probs=259.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHccccc------chHHHHHHHHHHhcCCHHHHHHHHhcCCCCC----cchHHHH
Q 038936 60 GVFISNCLLDMYAKCGNISDAQTLFDEMQERD------VCSYNTMISGFTKGGSLEQARNLFDEMPQRD----NFSWTAM 129 (476)
Q Consensus 60 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~l 129 (476)
++...+.|...|.-.|++..++.+...+...+ ..+|-.+.++|...|++++|...|....+.+ ...+.-+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 44555555555666666666666665555321 2345556666666666666666665554421 1223345
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhh----hhhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 038936 130 ISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQ----CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYG 205 (476)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 205 (476)
...+.+.|+.+.+...|+.... ..+.+..+...+-..|+..+ ..+.|..++....+.- +.|...|..+...+-
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k--~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLK--QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE 425 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHH--hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH
Confidence 5666666666666666666653 22222333333333333332 3445555555544433 445556665555554
Q ss_pred cCCCHHHHHHHHHhhc--------ccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHh------hHHHHHH
Q 038936 206 KCGSINEARQIFDKMV--------DRDVVSWTAMIGRYFQEGRREEGFALFSELIKS---GIRPNAF------TFAGVLN 268 (476)
Q Consensus 206 ~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~------~~~~l~~ 268 (476)
...-+. ++..|.... ...+...|.+.......|++..|...|.+.... ...+|.. +-..+..
T Consensus 426 ~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 426 QTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred hcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 433322 244443331 234455677777777788888888888777654 1223321 2223344
Q ss_pred HHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHH
Q 038936 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKA 345 (476)
Q Consensus 269 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 345 (476)
.....++.+.|.+.|..+.+.. |.-...|..++.+....+...+|...++.+.. .++..+..+...+.+...+..|
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 4556678888888888887763 33444444454444445677788888877764 5677788788888888888888
Q ss_pred HHHHHHHHHcC-CCCcHHHHHHHHHHHhc------------cCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 038936 346 LEYFELLLKSG-TQPDHIVFVGVLTACTH------------AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412 (476)
Q Consensus 346 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 412 (476)
.+-|+...+.- ..+|..+...|...|.. .+..++|+++|.+++. ..|.+...-+-++-+++..|+
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccC
Confidence 88777665542 23576777777776543 2456789999998886 345677777889999999999
Q ss_pred hhhHHHHHhhCC--CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCchhHHHHHHhhhc
Q 038936 413 FHEAEDVISKMP--MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE--IEPENPATYVTMANIYAS 475 (476)
Q Consensus 413 ~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~y~~ 475 (476)
+.+|..+|.++. ......+|..++.+|...|++-.|++.|+..++ ...+++.....|+.+|.+
T Consensus 662 ~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 999999999973 223567899999999999999999999999998 334577888889988764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-17 Score=156.85 Aligned_cols=423 Identities=11% Similarity=0.055 Sum_probs=307.1
Q ss_pred hhhhcCCHHHHHHHHHhcC--CCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 038936 4 ILCNQRRLKEALQILHQIS--HPSP--SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD 79 (476)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~--~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 79 (476)
...++|+++.|++.|+++. .|+. ..+ .++..+...|+.++|+.++++..... +........+...+...|++++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 4578999999999999996 3442 244 88888889999999999999998311 1223333333568888899999
Q ss_pred HHHHHHHccc--c-cchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHh--cCChhHHHHHHHHHHhccC
Q 038936 80 AQTLFDEMQE--R-DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVR--YNQPIEALDLYRMMQNFEN 154 (476)
Q Consensus 80 A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~ 154 (476)
|+++|+++.+ | ++..+..++..+...++.++|++.++++.+.++.....+..++.. .++..+|++.++++.. .
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~--~ 198 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR--L 198 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH--h
Confidence 9999999986 3 456777888999999999999999999988665543334444444 5666669999999986 2
Q ss_pred CCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHH------HHHHHHHH-----HcCCC---HHHHHHHHHhh
Q 038936 155 SVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV------WSALSDMY-----GKCGS---INEARQIFDKM 220 (476)
Q Consensus 155 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~-----~~~~~---~~~a~~~~~~~ 220 (476)
.+.+...+..+..++.+.|-...|.++..+--.. +.+.... ...+++.- ....+ .+.|+.-++.+
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 3345566678888888888888888776642211 1111111 11111110 01122 34455555555
Q ss_pred cc---cchh-------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhC
Q 038936 221 VD---RDVV-------SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290 (476)
Q Consensus 221 ~~---~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 290 (476)
.. +++. ...-.+-++...|++.++++.|+.+...+.+....+-..+..+|...+++++|..+++.+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 33 2221 1224466788899999999999999998876566788899999999999999999999987653
Q ss_pred -----CCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--C-------------Ch---hhHHHHHHHHHhcCChHHHHH
Q 038936 291 -----YDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--P-------------DL---VSWTSLIAGYAQNGMPDKALE 347 (476)
Q Consensus 291 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-------------~~---~~~~~l~~~~~~~~~~~~A~~ 347 (476)
.+++......|.-+|...+++++|..+++.+.+ | |+ ..+..++..+...|+..+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 122333457789999999999999999998864 1 11 124456777899999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCC
Q 038936 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMK 426 (476)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 426 (476)
.++++.... +-|......+...+...|.+.+|.+.++.+... .|-+..+....+..+...|++.+|..+.+.+ ...
T Consensus 438 ~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 438 KLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 999998864 457788888999999999999999999777643 3445667778899999999999999999876 344
Q ss_pred CcHHHHHH
Q 038936 427 PDKFLWAS 434 (476)
Q Consensus 427 p~~~~~~~ 434 (476)
|+......
T Consensus 515 Pe~~~~~~ 522 (822)
T PRK14574 515 PEDIPSQE 522 (822)
T ss_pred CCchhHHH
Confidence 54443333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-16 Score=142.96 Aligned_cols=182 Identities=16% Similarity=0.069 Sum_probs=129.2
Q ss_pred hhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 038936 5 LCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 81 (476)
+.-.|++++|.+++.++. +.++..|.+|...|-.+|+.+++...+-.+...+ +-|...|..+.......|++++|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 344599999999999984 7788899999999999999999988877666654 346788999999999999999999
Q ss_pred HHHHHcccc---cchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCc----c----hHHHHHHHHHhcCChhHHHHHHHHHH
Q 038936 82 TLFDEMQER---DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN----F----SWTAMISGYVRYNQPIEALDLYRMMQ 150 (476)
Q Consensus 82 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~----~~~~l~~~~~~~~~~~~a~~~~~~~~ 150 (476)
-.|.++.+. +...+-.-+..|-+.|+...|...|.++.+.++ . .-..+++.+...++-+.|++.++...
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999988763 334444557778888888888888877765433 1 12223455555566677777666666
Q ss_pred hccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 038936 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187 (476)
Q Consensus 151 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 187 (476)
...+...+...++.++..+.+...++.+.........
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 5344455555666666666666666666555555444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=147.59 Aligned_cols=440 Identities=12% Similarity=0.083 Sum_probs=306.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCChHHHHHHHHHccc--cc------chHHHHH
Q 038936 28 IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC-LLDMYAKCGNISDAQTLFDEMQE--RD------VCSYNTM 98 (476)
Q Consensus 28 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l 98 (476)
+...|.+.|....-..+|+..|+-..+...-|+...... +...+.+...+.+|++.|+.... |+ ....+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 334455667777788899999999988877777655432 44667788899999999987764 22 2356666
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCc------------hHHHH
Q 038936 99 ISGFTKGGSLEQARNLFDEMPQ--RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNK------------FTLSS 164 (476)
Q Consensus 99 ~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~~~ 164 (476)
...+++.|.++.|+..|+...+ |+..+-..|+-++.-.|+.++..+.|.+|.... ..||. ...+.
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip-~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIP-GEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCC-CCCCcccccCCcCCcchHHHHH
Confidence 6678899999999999998875 455554456666667899999999999998732 22222 22222
Q ss_pred HHH-----HHHhhhh--hhhHHHHHHHHHHcCCCchHH-------------HHH--------HHHHHHHcCCCHHHHHHH
Q 038936 165 VLS-----AVSAIQC--LRLGKEIHGYIMRTGFDSDEV-------------VWS--------ALSDMYGKCGSINEARQI 216 (476)
Q Consensus 165 ll~-----~~~~~~~--~~~a~~~~~~~~~~~~~~~~~-------------~~~--------~l~~~~~~~~~~~~a~~~ 216 (476)
.+. -..+.+. .+++.-.-..++.--+.|+.. .+. .-..-+.+.|+++.|+++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 221 1111111 111111111122111222210 000 112346788999999999
Q ss_pred HHhhcccchhhHHHH-----HHHHHh-cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhC
Q 038936 217 FDKMVDRDVVSWTAM-----IGRYFQ-EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290 (476)
Q Consensus 217 ~~~~~~~~~~~~~~l-----~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 290 (476)
+.-+.+.|..+-... +--|.+ ..++.+|.++-+..+... +-+......-.+.....|+++.|.+.+++.....
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 988877665443222 122222 235666666655554332 2222222222223445789999999999998765
Q ss_pred CCCchhhHHHHHHHhhhcCChhhHHHHHccCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHH
Q 038936 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMP---RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367 (476)
Q Consensus 291 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 367 (476)
-.-....| .+...+-..|++++|+++|-++. ..+..+...+...|-...++..|++++.+.... ++.|+..+..|
T Consensus 521 asc~ealf-niglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl 598 (840)
T KOG2003|consen 521 ASCTEALF-NIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKL 598 (840)
T ss_pred hHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHH
Confidence 33333333 35556788999999999998776 367778888889999999999999999887664 56678889999
Q ss_pred HHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHHHHHHHHHh-cCCh
Q 038936 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLLGGCRI-HGNL 445 (476)
Q Consensus 368 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~-~g~~ 445 (476)
...|-+.|+-.+|.+++-.--. -+|-+.++...|+.-|....-+++|+..|+++ -+.|+..-|..++..|.+ .|++
T Consensus 599 ~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccH
Confidence 9999999999999998765553 46778899999999999999999999999997 578999999988877765 5999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 446 DLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 446 ~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
.+|..+|+...+..|+|..++..|..+.
T Consensus 677 qka~d~yk~~hrkfpedldclkflvri~ 704 (840)
T KOG2003|consen 677 QKAFDLYKDIHRKFPEDLDCLKFLVRIA 704 (840)
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHh
Confidence 9999999999999999999999988764
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-15 Score=124.48 Aligned_cols=415 Identities=16% Similarity=0.237 Sum_probs=225.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cCChH-HHHHHHHHcc---cccchHHHHH
Q 038936 25 SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK--CGNIS-DAQTLFDEMQ---ERDVCSYNTM 98 (476)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~-~A~~~~~~~~---~~~~~~~~~l 98 (476)
.+.+=|.+++ +..+|...++.-+|+.|.+.|++.+...-..|+..-+- ..++. .-++.|-.|. +.+..+|
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--- 190 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--- 190 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc---
Confidence 3344556665 45678999999999999999988887777776655332 22222 1122232332 1233334
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhH
Q 038936 99 ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178 (476)
Q Consensus 99 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 178 (476)
+.|++.+ ++-+...+...++..+|.++++--..+.|.+++++... ...+.+..+||.+|.+.+-. ..
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~----~~ 257 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNGLIGASSYS----VG 257 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhh----cc
Confidence 2343332 33344444555666666666666666666666666655 55555666666665543322 22
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHH----Hhh----cccchhhHHHHHHHHHhcCChhH-HHHHHH
Q 038936 179 KEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF----DKM----VDRDVVSWTAMIGRYFQEGRREE-GFALFS 249 (476)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~----~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~ 249 (476)
.++..+|.+..+.||..|+|+++.+..+.|+++.|.+-+ .+| ++|...+|..++..+++.++..+ +..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 555666666666666666666666666666555443333 223 33555566666666665555433 333333
Q ss_pred HHHHc----CC---CC-CHhhHHHHHHHHhccccHHHHHHHHHHHHHhC----CCCc---hhhHHHHHHHhhhcCChhhH
Q 038936 250 ELIKS----GI---RP-NAFTFAGVLNACADHAAEELGKQVHGYMTRIG----YDPY---SFAASALVHMYSKCGNVENS 314 (476)
Q Consensus 250 ~~~~~----~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a 314 (476)
++... .+ .| |...|...|..|.+..+.+.|.++..-..... +.|+ ..-|..+..+.+.....+.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221 11 12 33345555566666666666666554433221 1222 12334455555566666666
Q ss_pred HHHHccCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC---------------
Q 038936 315 KKVFNGMPR----PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG--------------- 375 (476)
Q Consensus 315 ~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------- 375 (476)
...|+.+.. |+..+...++++....|.++-.-++|..++..|...+......++..+++..
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAF 497 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 666666553 5555555556666666666666666666655553333333333333333222
Q ss_pred -----chhhHHH-HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-------CCCCcHHHHHHHHHHHHhc
Q 038936 376 -----LVDKGLQ-YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-------PMKPDKFLWASLLGGCRIH 442 (476)
Q Consensus 376 -----~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~ 442 (476)
++.++.+ .-.++. ....+....+.++-.+.|.|..++|.++|.-+ +..|.....-.++..-...
T Consensus 498 ak~aad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 498 AKCAADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred HHHHHHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence 1111111 111222 22334445777888899999999999988765 2234434444666666777
Q ss_pred CChHHHHHHHHHHHHcC
Q 038936 443 GNLDLAKRAAEALFEIE 459 (476)
Q Consensus 443 g~~~~A~~~~~~~~~~~ 459 (476)
++..+|...++-+...+
T Consensus 575 ~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 575 NSPSQAIEVLQLASAFN 591 (625)
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 88889998888886644
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-13 Score=122.96 Aligned_cols=447 Identities=12% Similarity=0.101 Sum_probs=286.6
Q ss_pred CHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038936 10 RLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86 (476)
Q Consensus 10 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 86 (476)
+.++|.-++.++. +.+...|.++ .+...++.|..+++...+. ++.+..+|......-..+|+.+...++...
T Consensus 391 ~~~darilL~rAveccp~s~dLwlAl----arLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~r 465 (913)
T KOG0495|consen 391 EPEDARILLERAVECCPQSMDLWLAL----ARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDR 465 (913)
T ss_pred ChHHHHHHHHHHHHhccchHHHHHHH----HHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3344444554443 3344444433 3344566777777776664 555666666666666667777766666655
Q ss_pred ccc--------ccchHHHHHHHHHHhcCCHHHHHHHHhcCCC-----C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038936 87 MQE--------RDVCSYNTMISGFTKGGSLEQARNLFDEMPQ-----R-DNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152 (476)
Q Consensus 87 ~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 152 (476)
-.. -+...|-.-...|-+.|..-.+..+...... . --.+|..-...|.+.+.++-|..+|....+
T Consensus 466 gl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq- 544 (913)
T KOG0495|consen 466 GLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ- 544 (913)
T ss_pred HHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh-
Confidence 331 2334455555555566666555555554432 1 234677777777778888888888877764
Q ss_pred cCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc---chhhHH
Q 038936 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWT 229 (476)
Q Consensus 153 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~ 229 (476)
-.+-+...|......--..|..+....++++....- +-....+......+...|+...|..++....+. +...|-
T Consensus 545 -vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwl 622 (913)
T KOG0495|consen 545 -VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWL 622 (913)
T ss_pred -hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHH
Confidence 233344556666666666777777778887777653 455556666677777788888888888877543 334576
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcC
Q 038936 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309 (476)
Q Consensus 230 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 309 (476)
.-+..-..+.+++.|..+|.+.... .|+...|.--+..--..+..++|.+++++..+. ++.-...|..+.+.+-+.+
T Consensus 623 aavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHH
Confidence 7777777888888888888877664 466666655555555677788888888777765 3555667777778888888
Q ss_pred ChhhHHHHHccCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHH
Q 038936 310 NVENSKKVFNGMPR--PD-LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386 (476)
Q Consensus 310 ~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 386 (476)
+.+.|...|..-.+ |+ +..|-.+...--+.|++-+|..++++..-.+ +-+...|...++.-.+.|..+.|..++.+
T Consensus 700 ~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888777665 43 3466667777777778888888888887765 33566777777777888888888888887
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 038936 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATY 466 (476)
Q Consensus 387 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 466 (476)
+.++ .+.+...|..-+....+.++-..+.+.+++... |+.+...+...+....++++|.+.|.++++.+|++..+|
T Consensus 779 ALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~w 854 (913)
T KOG0495|consen 779 ALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAW 854 (913)
T ss_pred HHHh--CCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHH
Confidence 7764 344555555555555555555555555555442 333334444445555666666666666666666666665
Q ss_pred HHHHHh
Q 038936 467 VTMANI 472 (476)
Q Consensus 467 ~~l~~~ 472 (476)
..+...
T Consensus 855 a~fykf 860 (913)
T KOG0495|consen 855 AWFYKF 860 (913)
T ss_pred HHHHHH
Confidence 554433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.3e-14 Score=120.31 Aligned_cols=445 Identities=14% Similarity=0.168 Sum_probs=336.4
Q ss_pred hcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHH
Q 038936 7 NQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV-FISNCLLDMYAKCGNISDAQT 82 (476)
Q Consensus 7 ~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 82 (476)
.++++..|..+|+.+. ..+...|...+..-.+...+..|..+++..+.. -|-+ ..|-..+.+--..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 4567889999999985 677788888899999999999999999999885 3433 344445555557799999999
Q ss_pred HHHHcc--cccchHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCC-C
Q 038936 83 LFDEMQ--ERDVCSYNTMISGFTKGGSLEQARNLFDEMP--QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV-S 157 (476)
Q Consensus 83 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~ 157 (476)
+|+... +|+...|.+.|..-.+.+.++.|..++++.. .|++.+|--....=.+.|+...|..+|......-+.. .
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 999987 4999999999999999999999999999976 6888999999999999999999999999887632221 1
Q ss_pred CchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCch--HHHHHHHHHHHHcCCCHHHHHHHH--------Hhhccc---c
Q 038936 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD--EVVWSALSDMYGKCGSINEARQIF--------DKMVDR---D 224 (476)
Q Consensus 158 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~--------~~~~~~---~ 224 (476)
+...+++....-.+...++.|.-+++..+.+- |.+ ...|......--+-|+........ +.+++. |
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 22234444444456778999999999988763 333 456666665555666654444332 333443 4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh--h---HH-HHHHHH----hccccHHHHHHHHHHHHHhCCCCc
Q 038936 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF--T---FA-GVLNAC----ADHAAEELGKQVHGYMTRIGYDPY 294 (476)
Q Consensus 225 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~---~~-~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~ 294 (476)
..+|-..+..-...|+.+...++|++.+.. ++|-.. . |. ..|+.+ ....+.+.+.++++..++. +|..
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHk 399 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHK 399 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcc
Confidence 456777777777889999999999999875 455321 1 11 122221 2467899999999999885 5667
Q ss_pred hhhHHHHHHHh----hhcCChhhHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 038936 295 SFAASALVHMY----SKCGNVENSKKVFNGMPR--PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368 (476)
Q Consensus 295 ~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 368 (476)
..++..+--+| .++.++..|.+++..... |...++...|..-.+.++++.+..++++.++-+ +-|..+|....
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kya 478 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYA 478 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHH
Confidence 77777665554 477899999999988874 788889999999999999999999999999965 34667788777
Q ss_pred HHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHHHHHHHHH-----hc
Q 038936 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLLGGCR-----IH 442 (476)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-----~~ 442 (476)
..-...|+.+.|..+|.-++....+......|...+..=...|.++.|..+++++ ...+...+|-++..--. ..
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~ 558 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQE 558 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccccccc
Confidence 7778899999999999999876444445556777777778999999999999996 44455667776665433 22
Q ss_pred C-----------ChHHHHHHHHHHHH
Q 038936 443 G-----------NLDLAKRAAEALFE 457 (476)
Q Consensus 443 g-----------~~~~A~~~~~~~~~ 457 (476)
| ....|..+|+++..
T Consensus 559 ~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 559 DEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred ccchhhhhcchhHHHHHHHHHHHHHH
Confidence 4 56788888888876
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9e-14 Score=123.52 Aligned_cols=454 Identities=12% Similarity=0.090 Sum_probs=368.8
Q ss_pred hhhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHH----HHcCCCCChhhHHHHHHHHHhcCC
Q 038936 4 ILCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHL----KSSGFKPGVFISNCLLDMYAKCGN 76 (476)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~ 76 (476)
+|.+..-|+.|..++..+. +.++..|.+-...--++|+.+...+++.+. ...|+..+...|..=...|-..|.
T Consensus 415 AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 5677788899999988874 889999999888888999999998888764 456888888888888888888999
Q ss_pred hHHHHHHHHHccc------ccchHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHH
Q 038936 77 ISDAQTLFDEMQE------RDVCSYNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYR 147 (476)
Q Consensus 77 ~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~ 147 (476)
.-.+..+...+.. .-..+|..-...|.+.+.++-|..+|....+- +...|......--..|..++...+|+
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 8888888887763 23468999999999999999999999988763 45567776666667899999999999
Q ss_pred HHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc--cch
Q 038936 148 MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD--RDV 225 (476)
Q Consensus 148 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~ 225 (476)
+... ..+-....+.....-.-..|+...|..++....+.. +.+..++..-+..-....++++|..+|.+... ++.
T Consensus 575 kav~--~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 575 KAVE--QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE 651 (913)
T ss_pred HHHH--hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence 9985 344444555666666777899999999999998876 55788999999999999999999999998854 566
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 038936 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA-FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304 (476)
Q Consensus 226 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (476)
..|.--+..--..+..++|.+++++.++. -|+- ..|..+.+.+.+.++.+.|...|..-.+. +|..+..+-.|...
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakl 728 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKL 728 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHH
Confidence 67777777777789999999999998885 4554 45666667788899999999888766554 46667778888888
Q ss_pred hhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHH
Q 038936 305 YSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381 (476)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 381 (476)
--+.|.+-.|..++++..- .+...|-..|..-.+.|+.+.|..++.+.++. ++.+...|..-|...-+.++-....
T Consensus 729 eEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHH
Confidence 8899999999999998763 46678999999999999999999999998875 4555667777777666666655555
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
..++ ....|+++...++..+....++++|.+.|.+. ...|| ..+|..+...+.++|.-++-.+++.+...-+
T Consensus 808 DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 808 DALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 5543 23557778889999999999999999999996 55564 5688888899999999999999999999999
Q ss_pred CCCchhHHHHH
Q 038936 460 PENPATYVTMA 470 (476)
Q Consensus 460 p~~~~~~~~l~ 470 (476)
|.+...|-...
T Consensus 882 P~hG~~W~avS 892 (913)
T KOG0495|consen 882 PTHGELWQAVS 892 (913)
T ss_pred CCCCcHHHHHh
Confidence 99887776543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-13 Score=114.91 Aligned_cols=357 Identities=13% Similarity=0.108 Sum_probs=221.0
Q ss_pred cchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHH--HHHHHH
Q 038936 91 DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTL--SSVLSA 168 (476)
Q Consensus 91 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~ll~~ 168 (476)
|...+-.....+.+.|....|.+.|......-+..|.+.+....-..+.+.+..+.. +.+.|..-. ..+..+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~------~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV------GLPSDMHWMKKFFLKKA 236 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh------cCcccchHHHHHHHHHH
Confidence 333333444445566777777777776665555555555444333333333322221 111111111 223345
Q ss_pred HHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccch------hhHHHHHHHHHhcCChh
Q 038936 169 VSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV------VSWTAMIGRYFQEGRRE 242 (476)
Q Consensus 169 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~ 242 (476)
+......+++.+-.+.....|++.+...-+....+.-...++++|+.+|+++.+.|+ .+|+..+ |+++.+..
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~sk 314 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHH
Confidence 555566777777777777777777776666666677777888888888888876544 3444433 33332221
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCC
Q 038936 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322 (476)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (476)
+..+.+-.-.--+-.+.|.-.+.+.|+-.++.+.|...|+...+.+ +.....++.+.+-|....+...|...++.+.
T Consensus 315 --Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 315 --LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred --HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 1222211111012334566667777777788888888888888776 5556677777788888888888888888776
Q ss_pred C---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhh
Q 038936 323 R---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH 399 (476)
Q Consensus 323 ~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 399 (476)
+ .|-..|-.++++|.-.+-+.-|+-.|++..... +.|+..|..|..+|.+.++.++|+..|.++..- -..+...
T Consensus 392 di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dte~~~ 468 (559)
T KOG1155|consen 392 DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDTEGSA 468 (559)
T ss_pred hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--cccchHH
Confidence 5 355677778888888888888888888887742 335667888888888888888888888887753 3445567
Q ss_pred HHHHHHHHHhcCChhhHHHHHhhC--------CCCCcHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038936 400 YACIVDLLARSGRFHEAEDVISKM--------PMKPDKF-LWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 400 ~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 461 (476)
+..|++.|.+.++.++|...+++. ...|... ....|..-+.+.+++++|..........+|.
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 778888888888888888777663 1223222 2223444455667777777766666555443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.2e-14 Score=125.82 Aligned_cols=252 Identities=12% Similarity=0.031 Sum_probs=179.6
Q ss_pred HHHHHcCCCHHHHHHHHHhhcccchh--hHH--HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccH
Q 038936 201 SDMYGKCGSINEARQIFDKMVDRDVV--SWT--AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276 (476)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 276 (476)
.....+.|+++.|...+.++.+.++. ... .....+...|+++.|...++++.+.. +-+......+...+.+.|++
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhH
Confidence 34446667777777777666442221 111 22456666677777777777766654 33455566666667777777
Q ss_pred HHHHHHHHHHHHhCCCCchh-------hHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHH
Q 038936 277 ELGKQVHGYMTRIGYDPYSF-------AASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKAL 346 (476)
Q Consensus 277 ~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 346 (476)
+.+..++..+.+.+..++.. .+..++.......+.+...++++.+.+ .++.....+...+...|+.++|.
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 77777777776665332221 222233333344455666777777753 57778888999999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CC
Q 038936 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PM 425 (476)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 425 (476)
+.+++..+. .|+.... ++.+....++.+++.+..++..++ .|.|+..+..++..+.+.|++++|.+.|+++ ..
T Consensus 284 ~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 284 QIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999884 4555322 334445669999999999999975 4566777889999999999999999999996 77
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 426 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
.|+...+..+...+...|+.++|.++|++.+.+.
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 8999999999999999999999999999998854
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.5e-14 Score=121.73 Aligned_cols=279 Identities=15% Similarity=0.134 Sum_probs=222.3
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchh---hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038936 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV---SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267 (476)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 267 (476)
..+........+-+...+++.+..++.+.+.+.|+. .+..-|.++...|+..+-..+-.++.+.- |....+|-.+.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 345556666777888899999999999999776554 45555778899999999888888888864 66678888888
Q ss_pred HHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CC-hhhHHHHHHHHHhcCChHH
Q 038936 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PD-LVSWTSLIAGYAQNGMPDK 344 (476)
Q Consensus 268 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~ 344 (476)
-.|...|...+|.+.|.+....+ +.-...|-.+.+.|.-.|.-++|+..+..+.+ |. ...+--+..-|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 88888899999999999987765 44456788889999999999999988877664 22 2233335556888999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCC-----CCChhhHHHHHHHHHhcCChhhHHHH
Q 038936 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL-----TYTADHYACIVDLLARSGRFHEAEDV 419 (476)
Q Consensus 345 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~ 419 (476)
|.++|.+..... +.|+..++-+.-.....+.+.+|..+|+...+.-.- +.-..+++.|+.+|.+.+++++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999999988742 446667777777777889999999999988742111 11345688999999999999999999
Q ss_pred HhhC-CCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 420 ISKM-PMK-PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 420 ~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
+++. ... .+..++.+++..|...|+++.|+..|.+++.+.|+|..+-..|..+
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9996 333 4888999999999999999999999999999999997776666543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-15 Score=132.50 Aligned_cols=281 Identities=14% Similarity=0.140 Sum_probs=223.6
Q ss_pred hhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc------chhhHHHHHHHHHhcCChhHHHHH
Q 038936 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR------DVVSWTAMIGRYFQEGRREEGFAL 247 (476)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~ 247 (476)
+.++|...|..+- ..+..+..+...+..+|...+++++|+++|+.+.+. +...|.+.+-.+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp-~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLP-SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhH-HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 4667777777733 334445577788999999999999999999999653 44566666544322 122233
Q ss_pred H-HHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCCh
Q 038936 248 F-SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326 (476)
Q Consensus 248 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 326 (476)
+ +.+.+.. +-.+.+|-.+.++|.-+++.+.|++.|++..+.+ +....+|+.+.+-+....++|.|...|+.....|+
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 3 3333332 5677899999999999999999999999998875 45788999999999999999999999999999888
Q ss_pred hhHHH---HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHH
Q 038936 327 VSWTS---LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403 (476)
Q Consensus 327 ~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 403 (476)
..|++ ++..|.+.++++.|+-.|+++.+-+ +.+.+....+...+.+.|+.++|+++++++..- -+.++..-..-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHH
Confidence 77666 5677999999999999999999965 235566777888889999999999999999853 24455566667
Q ss_pred HHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 038936 404 VDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 404 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 464 (476)
+..+...++.++|...++++ ...| +...+..++..|.+.|+.+.|+..|--|.+++|.-..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 88899999999999999998 3455 5567888889999999999999999999999997544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.9e-13 Score=113.68 Aligned_cols=383 Identities=12% Similarity=0.067 Sum_probs=266.6
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcch-HHHHHHHHHhc
Q 038936 58 KPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS-WTAMISGYVRY 136 (476)
Q Consensus 58 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~l~~~~~~~ 136 (476)
..|...+-.....+.+.|..+.|+..|......-+..|.+-+....-..+.+.+..+...+...+... ---+..++-..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 33443333334455567888899999888776555555555554444455666555555554432221 12233566666
Q ss_pred CChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCC--CchHHHHHHHHHHHHcCCCHHHHH
Q 038936 137 NQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF--DSDEVVWSALSDMYGKCGSINEAR 214 (476)
Q Consensus 137 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 214 (476)
.+.++++.-...... .|.+-+...-+....+.....++++|+.+|+++.+... -.|..+|..++..-....++.---
T Consensus 241 ~q~~e~~~k~e~l~~-~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 241 HQHEEALQKKERLSS-VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHh-ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 778888887777775 45554544445555566788899999999999998742 135677777665443333322222
Q ss_pred HHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc
Q 038936 215 QIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 294 (476)
...-.+-+--+.|...+.+-|.-.++.++|...|++.++.+ +.....|+.+..-|...++...|++.++.+++.. |.|
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~D 397 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRD 397 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chh
Confidence 22223334456677888888999999999999999999875 3445677777778999999999999999999886 778
Q ss_pred hhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 038936 295 SFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371 (476)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 371 (476)
-..|-.|.++|...+...-|+-.|++..+ .|+..|.+|..+|.+.++.++|++.|......| ..+...+..|.+.|
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLy 476 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLY 476 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHH
Confidence 88899999999999999999999998874 578899999999999999999999999999876 34667889999999
Q ss_pred hccCchhhHHHHHHHHHHhc---CC-CC-ChhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChH
Q 038936 372 THAGLVDKGLQYFHSIKEKH---GL-TY-TADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLD 446 (476)
Q Consensus 372 ~~~~~~~~a~~~~~~~~~~~---~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 446 (476)
.+.++..+|.++|++.++.. |. .| ......-|+.-+.+.+++++|-...... +......+
T Consensus 477 e~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~---------------~~~~~e~e 541 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV---------------LKGETECE 541 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH---------------hcCCchHH
Confidence 99999999999999877632 11 22 2223333555667777777776544332 11133467
Q ss_pred HHHHHHHHHHHcC
Q 038936 447 LAKRAAEALFEIE 459 (476)
Q Consensus 447 ~A~~~~~~~~~~~ 459 (476)
+|..+++++.+..
T Consensus 542 eak~LlReir~~~ 554 (559)
T KOG1155|consen 542 EAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.6e-14 Score=120.11 Aligned_cols=398 Identities=13% Similarity=0.160 Sum_probs=219.6
Q ss_pred hhhhcCCHHHHHHHHHhcC--CCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038936 4 ILCNQRRLKEALQILHQIS--HPS------PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75 (476)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~--~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 75 (476)
.+.+.+++.+|+++++-.. .|+ ....+.+...+.+.|.++.|..-|+...+.. |+..+-..|+-++..-|
T Consensus 246 i~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~ 323 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIG 323 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecC
Confidence 3556667777777766542 121 1233444445566777777777777666643 55444333444444556
Q ss_pred ChHHHHHHHHHccc----------------ccchHHH-----HHHHHHHhcC--CHHHHHHHHhcCC----CCCcc----
Q 038936 76 NISDAQTLFDEMQE----------------RDVCSYN-----TMISGFTKGG--SLEQARNLFDEMP----QRDNF---- 124 (476)
Q Consensus 76 ~~~~A~~~~~~~~~----------------~~~~~~~-----~l~~~~~~~g--~~~~a~~~~~~~~----~~~~~---- 124 (476)
+.++..+.|.++.. |+....+ -.+.-+-+.+ +.++++-.--++. .|+-.
T Consensus 324 d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~d 403 (840)
T KOG2003|consen 324 DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCD 403 (840)
T ss_pred cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccH
Confidence 66666666666642 1111111 1111121111 1222222222222 22100
Q ss_pred ---------hHHH--------HHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHH--hhhhhhhHHHHHHHH
Q 038936 125 ---------SWTA--------MISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS--AIQCLRLGKEIHGYI 185 (476)
Q Consensus 125 ---------~~~~--------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 185 (476)
.+.. -..-+.+.|+++.|+++++-+.. ...+.-...-+.+-.... .-.++..|.++-+..
T Consensus 404 wcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~-kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a 482 (840)
T KOG2003|consen 404 WCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEK-KDNKTASAAANNLCALRFLQGGKDFADAQQYADIA 482 (840)
T ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHh-ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH
Confidence 0000 11235567777777777766654 222222222222221111 122455555555444
Q ss_pred HHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHH---HHHHHhcCChhHHHHHHHHHHHcCCCCCHhh
Q 038936 186 MRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAM---IGRYFQEGRREEGFALFSELIKSGIRPNAFT 262 (476)
Q Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 262 (476)
+... ..+......-.+.....|++++|.+.+++....|...-..| .-.+-..|+.++|++.|-++..- +..+...
T Consensus 483 ln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~ev 560 (840)
T KOG2003|consen 483 LNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEV 560 (840)
T ss_pred hccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHH
Confidence 4322 22222222223334456777888888877777665443333 23455677778888777665432 2345556
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhc
Q 038936 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQN 339 (476)
Q Consensus 263 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 339 (476)
...+.+.|....+...|++++.+.... ++.|+.+.+.|...|-+.|+-..|...+-.--+ -+..+..-|..-|...
T Consensus 561 l~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh
Confidence 666667777777777777777665544 466777777788888888877777766544332 3555666666667777
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-hccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 038936 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTAC-THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 411 (476)
.-+++++.+|++..- +.|+..-|..++..| .+.|++++|.++|+.... .+|.+......|++.+...|
T Consensus 640 qf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 640 QFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhcccc
Confidence 777788888877655 567777777776655 467788888888877775 35667777777777766655
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-13 Score=118.82 Aligned_cols=413 Identities=14% Similarity=0.030 Sum_probs=257.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHccccc---chHHHHHHHHHHh
Q 038936 29 YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG-VFISNCLLDMYAKCGNISDAQTLFDEMQERD---VCSYNTMISGFTK 104 (476)
Q Consensus 29 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~ 104 (476)
+....+-|.+.|.+++|.++|.+.++. .|+ +..|.-...+|...|+|+++.+.-.+..+-+ +..+..-.+++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 444556788899999999999999985 467 7788888889999999999998888777633 3466777788888
Q ss_pred cCCHHHHHHH------HhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhH
Q 038936 105 GGSLEQARNL------FDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLG 178 (476)
Q Consensus 105 ~g~~~~a~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 178 (476)
.|++.+|+.= ++.+... ....++.-..+.--..++.+-+. ....++.|+.....+....+...-..
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~---s~~~~~eR~Lkk~a~~ka~e~~k--~nr~p~lPS~~fi~syf~sF~~~~~~--- 267 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNA---SIEPMAERVLKKQAMKKAKEKLK--ENRPPVLPSATFIASYFGSFHADPKP--- 267 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccc---hhHHHHHHHHHHHHHHHHHHhhc--ccCCCCCCcHHHHHHHHhhccccccc---
Confidence 8888887642 1111111 11111111111111112222222 01244555555444444433211000
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHc-CCCHHHHHHHHHhh-------ccc---c------hhhHHHHHHHHHhcCCh
Q 038936 179 KEIHGYIMRTGFDSDEVVWSALSDMYGK-CGSINEARQIFDKM-------VDR---D------VVSWTAMIGRYFQEGRR 241 (476)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~-------~~~---~------~~~~~~l~~~~~~~~~~ 241 (476)
.+...+-..|...-..+-..+.. ...+..|...+.+- ... | ..+......-+.-.|+.
T Consensus 268 -----~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~ 342 (606)
T KOG0547|consen 268 -----LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS 342 (606)
T ss_pred -----cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence 00000000011000111111111 01223333322221 011 1 11111122233456888
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccC
Q 038936 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM 321 (476)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (476)
-.|..-|+..+.....++. .|..+...|....+.++..+.|....+.+ +.++.+|..-.+++.-.+++++|..-|++.
T Consensus 343 ~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Ka 420 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKA 420 (606)
T ss_pred hhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999988886533332 26667777888999999999999998887 778888888899999999999999999998
Q ss_pred CCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCC-----
Q 038936 322 PRPDL---VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL----- 393 (476)
Q Consensus 322 ~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----- 393 (476)
...++ ..|-.+..+..+.+++++++..|++.++. ++.-+..|+.....+..++++++|.+.|+..++--..
T Consensus 421 i~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~ 499 (606)
T KOG0547|consen 421 ISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLII 499 (606)
T ss_pred hhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccc
Confidence 87443 34555555566788999999999999886 4555678888899999999999999999988853111
Q ss_pred -CCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 394 -TYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 394 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
.+.+-+...++..-.+ +++..|..+++++ ...| ....+..++....+.|+.++|+++|++...+.-
T Consensus 500 v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred ccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1112222333333333 8899999999986 5666 345788888888899999999999999887654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-13 Score=126.36 Aligned_cols=256 Identities=12% Similarity=0.001 Sum_probs=163.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHhhcc--cch--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccc
Q 038936 199 ALSDMYGKCGSINEARQIFDKMVD--RDV--VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274 (476)
Q Consensus 199 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 274 (476)
....+....|+++.|.+.+.+..+ |+. ...-.....+...|+++.|...++.+.+.. +-+......+...+...|
T Consensus 123 laA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~ 201 (409)
T TIGR00540 123 KAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSG 201 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHh
Confidence 334555555666666666655422 222 122223455555666666666666666553 334445555555666666
Q ss_pred cHHHHHHHHHHHHHhCCCCchhhHHHHHHHh---h----hcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHH
Q 038936 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMY---S----KCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDK 344 (476)
Q Consensus 275 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 344 (476)
+++.+.+.+..+.+.+..+.......-..++ . .....+.....++...+ .++..+..+...+...|++++
T Consensus 202 d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~ 281 (409)
T TIGR00540 202 AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDS 281 (409)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHH
Confidence 6666666666666654332221111111111 1 11223344445555543 477888888999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHH--H-HHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHh
Q 038936 345 ALEYFELLLKSGTQPDHIV--F-VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421 (476)
Q Consensus 345 A~~~~~~~~~~~~~~~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 421 (476)
|.+.+++..+.. ||... + ..........++.+.+.+.+++..+..+..|+.....++++.+.+.|++++|.+.|+
T Consensus 282 A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 282 AQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999999999864 44432 1 112222344678889999999888753333322667899999999999999999999
Q ss_pred h---CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 422 K---MPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 422 ~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
. ....|+...+..++..+.+.|+.++|.+++++.+.
T Consensus 360 ~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 360 NVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 35679988888999999999999999999999876
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-13 Score=112.89 Aligned_cols=247 Identities=19% Similarity=0.195 Sum_probs=131.9
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcc----cccc
Q 038936 17 ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ----ERDV 92 (476)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~ 92 (476)
++-+..+..+.++..+|.++++-...+.|.++|++......+.+..++|.+|.+-.-.-+ .+++.+|. .||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCch
Confidence 444445566777777777777777777777777777766666777777777765443322 44455544 3777
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHH----hcCC----CCCcchHHHHHHHHHhcCChhH-HHHHHHHHHh------ccCCCC
Q 038936 93 CSYNTMISGFTKGGSLEQARNLF----DEMP----QRDNFSWTAMISGYVRYNQPIE-ALDLYRMMQN------FENSVS 157 (476)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~a~~~~----~~~~----~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~------~~~~~~ 157 (476)
.|+|+++++..+.|+++.|.+.+ .+|+ +|...+|..+|..+.+.+++.+ +..++.++.. .....|
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 77777777777777766654432 2232 2445555555555555555432 2333333322 011122
Q ss_pred -CchHHHHHHHHHHhhhhhhhHHHHHHHHHHcC----CCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHH
Q 038936 158 -NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG----FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMI 232 (476)
Q Consensus 158 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 232 (476)
|...|...+..|.+..+.+.|.++...+.... ++|+.. ...-|..+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~----------------------------~~fYyr~~~ 405 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH----------------------------RNFYYRKFF 405 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHH----------------------------HHHHHHHHH
Confidence 22334444555555555555555444332211 111110 001123334
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCch
Q 038936 233 GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295 (476)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 295 (476)
...|.....+.-..+|+.|.-.-+-|+..+...++++..-.+.++-.-+++..+...|.....
T Consensus 406 ~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 406 DLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 444555555555666666655555566666666666666666666666666666555543333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.5e-12 Score=108.25 Aligned_cols=432 Identities=13% Similarity=0.148 Sum_probs=322.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc--ccc-hHHHHHHHHHHhcCCH
Q 038936 32 LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE--RDV-CSYNTMISGFTKGGSL 108 (476)
Q Consensus 32 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~ 108 (476)
..+--..++++..|..+|+.++.... .+...|...+..-.++..+..|..+++.... |-+ ..|--.+..--..|++
T Consensus 79 YaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi 157 (677)
T KOG1915|consen 79 YAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNI 157 (677)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccc
Confidence 33334456788899999999998764 3777788888888889999999999998764 332 3455555556678999
Q ss_pred HHHHHHHhcCC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 038936 109 EQARNLFDEMP--QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186 (476)
Q Consensus 109 ~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 186 (476)
..|.++|++.. +|+...|++.|+.=.+.+.++.|..+++...- +.|+..+|......-.+.|....+..+++..+
T Consensus 158 ~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 158 AGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999876 48999999999999999999999999999876 67999999999999999999999999999887
Q ss_pred Hc-CC-CchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc---c--hhhHHHHHHHHHhcCCh---hHHHH-----HHHHH
Q 038936 187 RT-GF-DSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---D--VVSWTAMIGRYFQEGRR---EEGFA-----LFSEL 251 (476)
Q Consensus 187 ~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~l~~~~~~~~~~---~~a~~-----~~~~~ 251 (476)
+. |- ..+...+.+....-.++..++.|.-+|.-.++. + ...|..+..---+-|+. ++++- -++.+
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 64 21 223445666666666778888998888766442 1 22333333222233443 33332 24445
Q ss_pred HHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchh-------hHHHH---HHHhhhcCChhhHHHHHccC
Q 038936 252 IKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF-------AASAL---VHMYSKCGNVENSKKVFNGM 321 (476)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l---~~~~~~~~~~~~a~~~~~~~ 321 (476)
++.+ +.|-.+|--.+..-...|+.+...++++..+.. +||-.. +|.-+ +-.-....+.+.+.++|+..
T Consensus 315 v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 315 VSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred HHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5544 556677777788888889999999999999876 355321 11111 11123567888999999877
Q ss_pred CC--CC-hh----hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCC
Q 038936 322 PR--PD-LV----SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394 (476)
Q Consensus 322 ~~--~~-~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 394 (476)
.+ |. .. .|-...+-..++.+...|.+++...+. .-|-..+|...|..-.+.+.++....+|++.++- .|
T Consensus 393 l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~P 468 (677)
T KOG1915|consen 393 LDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SP 468 (677)
T ss_pred HhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--Ch
Confidence 75 32 23 344445556788999999999988765 6788899999999889999999999999999963 35
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHhhCCCCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 038936 395 YTADHYACIVDLLARSGRFHEAEDVISKMPMKPD----KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 395 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
-+-.+|...+..=...|+++.|..+|+-+-..|. ...|.+.+..-...|.+++|..+|++.++..+.-. .|.+.+
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA 547 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFA 547 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHH
Confidence 5677888888888999999999999998755553 34677888777888999999999999999988544 777766
Q ss_pred Hhhh
Q 038936 471 NIYA 474 (476)
Q Consensus 471 ~~y~ 474 (476)
..-+
T Consensus 548 ~fe~ 551 (677)
T KOG1915|consen 548 KFEA 551 (677)
T ss_pred HHhc
Confidence 5433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.1e-13 Score=123.23 Aligned_cols=347 Identities=10% Similarity=0.088 Sum_probs=193.0
Q ss_pred CCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHH
Q 038936 106 GSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182 (476)
Q Consensus 106 g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 182 (476)
|++++|.+++.++.+. ....|..|...|-..|+.+++...+-.... -.+-|...|..+.....+.|++++|.-.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 5555555555544432 233445555555555555555444433321 12222244444444444555555555555
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccch----h----hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038936 183 GYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV----V----SWTAMIGRYFQEGRREEGFALFSELIKS 254 (476)
Q Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 254 (476)
.+.++.. |++...+---+..|-+.|+...|...|.++...++ . .-...++.+...++.+.|.+.+......
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 5555443 33333333444455555555555555555533222 0 1111233444444445555544444331
Q ss_pred -CCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHH---------------------------hCCCCchhh-HHHHHHHh
Q 038936 255 -GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR---------------------------IGYDPYSFA-ASALVHMY 305 (476)
Q Consensus 255 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------------------~~~~~~~~~-~~~l~~~~ 305 (476)
+-..+...+++++..+.+...++.+......+.. .+.+++..+ ...+....
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 1122333444444445555555555444444433 112233333 22222223
Q ss_pred hhcCChhhHHHHHccCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHH
Q 038936 306 SKCGNVENSKKVFNGMP----RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381 (476)
Q Consensus 306 ~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 381 (476)
.+.++..+++..+.... ..++..|.-+..+|...|++.+|+.+|..+......-+...|..++.+|...|.+++|+
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 34444444444333222 23456788888999999999999999999988755556678888999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCC-----------CCCcHHHHHHHHHHHHhcCChHHHHH
Q 038936 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP-----------MKPDKFLWASLLGGCRIHGNLDLAKR 450 (476)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~p~~~~~~~l~~~~~~~g~~~~A~~ 450 (476)
+.|+.++.. .|.+...-..|...+.+.|+.++|.+.++.+. ..|+....-.....+...|+.++-+.
T Consensus 470 e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 470 EFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999864 34556677788899999999999999998862 12344444455556777888888776
Q ss_pred HHHHHHH
Q 038936 451 AAEALFE 457 (476)
Q Consensus 451 ~~~~~~~ 457 (476)
....++.
T Consensus 548 t~~~Lv~ 554 (895)
T KOG2076|consen 548 TASTLVD 554 (895)
T ss_pred HHHHHHH
Confidence 6666654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=138.27 Aligned_cols=251 Identities=17% Similarity=0.251 Sum_probs=100.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHhh-cc----cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc
Q 038936 199 ALSDMYGKCGSINEARQIFDKM-VD----RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH 273 (476)
Q Consensus 199 ~l~~~~~~~~~~~~a~~~~~~~-~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (476)
.+...+.+.|++++|+++++.. .. .++..|..+...+...++++.|...++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 5688888999999999999543 22 244556666777778889999999999998765 2345566666665 688
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCC-----CCChhhHHHHHHHHHhcCChHHHHHH
Q 038936 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP-----RPDLVSWTSLIAGYAQNGMPDKALEY 348 (476)
Q Consensus 274 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~ 348 (476)
+++++|..++....+. .+++..+..++..+...++++++..+++.+. .++...|..+...+.+.|++++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888776554 3556666777888888888888888887743 24666788888888888999999999
Q ss_pred HHHHHHcCCCC-cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCC
Q 038936 349 FELLLKSGTQP-DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMK 426 (476)
Q Consensus 349 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 426 (476)
+++.++.. | |......++..+...|+.+++.++++..... .+.++..+..++.+|...|+.++|...|++. ...
T Consensus 169 ~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 99888853 4 4666777888888888888888888888765 2556667788888888889999999888886 334
Q ss_pred C-cHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 427 P-DKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 427 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
| |+.....++.++...|+.++|.++++++++
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 4 677778888888888999999888888765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.3e-14 Score=126.12 Aligned_cols=247 Identities=11% Similarity=0.070 Sum_probs=163.5
Q ss_pred HhhhhhhhHHHHHHHHHHcCCCchHHHH--HHHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHHhcCChhHH
Q 038936 170 SAIQCLRLGKEIHGYIMRTGFDSDEVVW--SALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGRREEG 244 (476)
Q Consensus 170 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 244 (476)
.+.|+++.+.+.+.++.+. .|+.... ......+...|+++.|...++.+.+. ++.....+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 4555555555555555433 3333222 23356677777888887777777542 344566677777777888888
Q ss_pred HHHHHHHHHcCCCCCHh-------hHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHH
Q 038936 245 FALFSELIKSGIRPNAF-------TFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317 (476)
Q Consensus 245 ~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 317 (476)
..++..+.+.+..++.. +|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+.
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888777765443221 2222233333334455555555555433 255677777888888888888888888
Q ss_pred HccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCCh
Q 038936 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397 (476)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 397 (476)
+++..+.....--.++.+.+..++++++++..+...+.. +-|...+..+...|...+++++|.+.|+++.+ ..|+.
T Consensus 286 L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~ 361 (398)
T PRK10747 286 ILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK---QRPDA 361 (398)
T ss_pred HHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCH
Confidence 877765222222233445556688888888888888763 33455677788888889999999999988885 37888
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 398 DHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
..+..+..++.+.|+.++|.+.+++.
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888899999999998888764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.1e-16 Score=134.40 Aligned_cols=253 Identities=15% Similarity=0.152 Sum_probs=81.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHcccc---cchHHHHHHHHHHhcC
Q 038936 31 SLIQFCRQNRALEEGKKVHSHLKSSG-FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER---DVCSYNTMISGFTKGG 106 (476)
Q Consensus 31 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g 106 (476)
.+...+.+.|++++|++++....... .+.+...|..+.......++++.|+..++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44667777888888888886554433 2334455555556666777888888888877652 34456666666 6777
Q ss_pred CHHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHH
Q 038936 107 SLEQARNLFDEMPQ--RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184 (476)
Q Consensus 107 ~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 184 (476)
++++|.++++..-+ +++..+...+..+.+.++++++.++++.+......+++...|..+...+.+.|+.+.|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888777766543 3555666777777778888888888877765333444555566666666666666666666666
Q ss_pred HHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhc---ccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh
Q 038936 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV---DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF 261 (476)
Q Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 261 (476)
.++.. |.|..+...++..+...|+.+++..+++... ..|+..+..+..+|...|+.++|..+|++..+.. +.|..
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~ 249 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPL 249 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccc
Confidence 66654 3345566666666666666666555555542 2345556666666666666666666666666543 34555
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHH
Q 038936 262 TFAGVLNACADHAAEELGKQVHGYM 286 (476)
Q Consensus 262 ~~~~l~~~~~~~~~~~~a~~~~~~~ 286 (476)
+...+..++...|+.+.|..+..++
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 5555566666666666666655544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-12 Score=108.45 Aligned_cols=398 Identities=14% Similarity=0.025 Sum_probs=262.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHccccc-chHHHHHHHHHHhcCCHH-HHHHHHhcCCCCCcchHHHHHHHHHhcCChhH
Q 038936 64 SNCLLDMYAKCGNISDAQTLFDEMQERD-VCSYNTMISGFTKGGSLE-QARNLFDEMPQRDNFSWTAMISGYVRYNQPIE 141 (476)
Q Consensus 64 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 141 (476)
-...+.+|...++-+.|...+.+..+.- ..-.+.++..+-+.|.-+ ++.--+......-+..... |.+..+.+ +..
T Consensus 100 ~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~-i~~ll~l~-v~g 177 (564)
T KOG1174|consen 100 RRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQV-IEALLELG-VNG 177 (564)
T ss_pred HHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHH-HHHHHHHh-hcc
Confidence 3445667777788888888877766532 223333333333333221 1111111111111111111 11111111 000
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHhh--hhhhhHHHHHHHHHH-cCCCchHHHHHHHHHHHHcCCCHHHHHHHHH
Q 038936 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAI--QCLRLGKEIHGYIMR-TGFDSDEVVWSALSDMYGKCGSINEARQIFD 218 (476)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 218 (476)
+..--..|.. -..+|...+....+.+++.. ++...+...+-.+.. .-++.|......+.+.+...|+.++|+..|+
T Consensus 178 ~e~~S~~m~~-~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe 256 (564)
T KOG1174|consen 178 NEINSLVMHA-ATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS 256 (564)
T ss_pred hhhhhhhhhh-eecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence 1111111211 23455555555555555433 333333333333322 3467788899999999999999999999999
Q ss_pred hhcccchhhHHH---HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCch
Q 038936 219 KMVDRDVVSWTA---MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYS 295 (476)
Q Consensus 219 ~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 295 (476)
+...-|+.+... ..-.+.+.|+.++...+...+.... ..+...|..-...+...++++.|..+-++.++.+ +.+.
T Consensus 257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~ 334 (564)
T KOG1174|consen 257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNH 334 (564)
T ss_pred HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccc
Confidence 987666554333 3445567889998888888876542 2233333333444556788999999888887765 4455
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH-HHH
Q 038936 296 FAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL-TAC 371 (476)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~ 371 (476)
..+-.-..++...|+.++|.-.|+.... -+..+|..|+.+|...|++.+|...-+...+. ...+..++..+. .+|
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVL 413 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceee
Confidence 5555556778899999999999998764 36789999999999999999999988877664 345666776663 343
Q ss_pred h-ccCchhhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHHHHHHHHHhcCChHHH
Q 038936 372 T-HAGLVDKGLQYFHSIKEKHGLTYT-ADHYACIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 372 ~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A 448 (476)
. ...--++|..++++... +.|+ ......+++.+...|+.++++.++++. ...||....+.++..+...+.+.+|
T Consensus 414 ~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred ccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHH
Confidence 3 34456789999988874 3554 456778899999999999999999995 7789999999999999999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHH
Q 038936 449 KRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 449 ~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
...|..++.++|+|..+...|-
T Consensus 491 m~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 491 MEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHHHHhcCccchHHHHHHH
Confidence 9999999999999988776553
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-11 Score=108.34 Aligned_cols=432 Identities=15% Similarity=0.134 Sum_probs=263.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccc--hHHHHHHHHHHhc
Q 038936 28 IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDV--CSYNTMISGFTKG 105 (476)
Q Consensus 28 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~ 105 (476)
...+=++.+...|++++|.....+++..+ +.+...+.+-+-++++.+++++|+.+.+.-..... .-+-.-+.+..+.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 34444566778889999999999998876 44566677777788889999999976665332111 1111223344578
Q ss_pred CCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHH
Q 038936 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI 185 (476)
Q Consensus 106 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 185 (476)
+..++|...++-....+..+...-...+.+.|++++|+++|+.+.++....-+...-..++.+.... .+. .+
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~----~~ 164 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ----LL 164 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH----HH
Confidence 9999999999966555666777777888999999999999999975222222222222222221111 010 11
Q ss_pred HHcCCCc--hHHHHHHHHHHHHcCCCHHHHHHHHHhhc--------ccch----------hhHHHHHHHHHhcCChhHHH
Q 038936 186 MRTGFDS--DEVVWSALSDMYGKCGSINEARQIFDKMV--------DRDV----------VSWTAMIGRYFQEGRREEGF 245 (476)
Q Consensus 186 ~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~----------~~~~~l~~~~~~~~~~~~a~ 245 (476)
......| +-..+-.....+...|++.+|+++++... +.|. .....|.-.+...|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 1112222 12222234556678899999999998872 1111 12334556777899999999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHH---HhccccH-H-------------HHHHHHHHHHHhCCCCchhhHHHHHHHhhhc
Q 038936 246 ALFSELIKSGIRPNAFTFAGVLNA---CADHAAE-E-------------LGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308 (476)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~-~-------------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (476)
.++...++.. ++|........+- +....++ + -+......+.... ......-+.++.+| .
T Consensus 245 ~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k~~i~~N~~lL~l~--t 320 (652)
T KOG2376|consen 245 SIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-KQAIYRNNALLALF--T 320 (652)
T ss_pred HHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHH--h
Confidence 9999999876 4555333322221 1111111 1 1111111111110 11111112233333 3
Q ss_pred CChhhHHHHHccCCCCC-hhhHHHHHH-HH-HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHH
Q 038936 309 GNVENSKKVFNGMPRPD-LVSWTSLIA-GY-AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385 (476)
Q Consensus 309 ~~~~~a~~~~~~~~~~~-~~~~~~l~~-~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 385 (476)
+..+.+.++-....... ...+.+++. +. ++...+..+.+++...-+....-.......++......|+++.|.+++.
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 44566666666665422 233344443 32 2333578888888888775433234455556677789999999999998
Q ss_pred --------HHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC--------CCCC-cHHHHHHHHHHHHhcCChHHH
Q 038936 386 --------SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM--------PMKP-DKFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 386 --------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~l~~~~~~~g~~~~A 448 (476)
.+.+ +...+.+...+...+.+.++.+.|..++.++ ...+ -..++..++..-.++|+-++|
T Consensus 401 ~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 401 LFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 4442 3444556777888899999888888887765 1222 223455555555677999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 449 KRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 449 ~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
..+++++++.+|++..+...|..+|+.
T Consensus 478 ~s~leel~k~n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 478 SSLLEELVKFNPNDTDLLVQLVTAYAR 504 (652)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHh
Confidence 999999999999999999999988864
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-14 Score=127.57 Aligned_cols=161 Identities=14% Similarity=0.068 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHH---HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038936 193 DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT---AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269 (476)
Q Consensus 193 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (476)
...+|+.+..-+.....+|.|...|+..+..|+..|+ .+...|.+.++++.|.-.|++..+-+ +-+.+....+...
T Consensus 454 faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~ 532 (638)
T KOG1126|consen 454 FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRI 532 (638)
T ss_pred cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHH
Confidence 4556666666666666666666666666655554433 34556666666666666666666543 2233344444444
Q ss_pred HhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 038936 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYF 349 (476)
Q Consensus 270 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 349 (476)
+.+.|+.|+|+++++++...+ +. |+..--..+..+...+++++|+..+
T Consensus 533 ~~~~k~~d~AL~~~~~A~~ld-~k-------------------------------n~l~~~~~~~il~~~~~~~eal~~L 580 (638)
T KOG1126|consen 533 QHQLKRKDKALQLYEKAIHLD-PK-------------------------------NPLCKYHRASILFSLGRYVEALQEL 580 (638)
T ss_pred HHHhhhhhHHHHHHHHHHhcC-CC-------------------------------CchhHHHHHHHHHhhcchHHHHHHH
Confidence 555555555555555555443 22 2222222333444445555555555
Q ss_pred HHHHHcCCCCcH-HHHHHHHHHHhccCchhhHHHHHHHHH
Q 038936 350 ELLLKSGTQPDH-IVFVGVLTACTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 350 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 388 (476)
+++++ +.|+. ..|..+...|-+.|+.+.|+..|.-+.
T Consensus 581 EeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 581 EELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 55555 22322 334444455555555555555554444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.7e-13 Score=122.65 Aligned_cols=284 Identities=12% Similarity=0.009 Sum_probs=182.8
Q ss_pred hcCChhHHHHHHHHHHhccCCCCCch-HHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHH
Q 038936 135 RYNQPIEALDLYRMMQNFENSVSNKF-TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA 213 (476)
Q Consensus 135 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 213 (476)
..|+++.|.+.+.+..+ ..|+.. .+.....+....|+.+.+.+.+....+....+...+.......+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35666666666655443 223322 22333344455566666666666655433122222333457777788888888
Q ss_pred HHHHHhhccc---chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH---HhccccHHHHHHHHHHHH
Q 038936 214 RQIFDKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA---CADHAAEELGKQVHGYMT 287 (476)
Q Consensus 214 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~ 287 (476)
...++.+.+. ++.....+...+...|++++|.+.+..+.+.++.++......-..+ ....+..+.+...+..+.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888888542 4456777788888888888888888888887643332221111111 122233333334444444
Q ss_pred HhC---CCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CChhh---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 288 RIG---YDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLVS---WTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359 (476)
Q Consensus 288 ~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 359 (476)
+.. .+.++..+..+...+...|+.++|.+.+++..+ |+... ...........++.+.+.+.+++..+.. +-
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~ 331 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DD 331 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CC
Confidence 432 124777888888899999999999999988875 44332 1222223445678888999998888753 22
Q ss_pred cH--HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 360 DH--IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 360 ~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
|+ ....++...+.+.|++++|.+.|+..... ...|+...+..++..+.+.|+.++|.+++++.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 45668889999999999999999953322 45788888889999999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.6e-13 Score=107.56 Aligned_cols=260 Identities=15% Similarity=0.185 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhhcccchh-------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHH
Q 038936 194 EVVWSALSDMYGKCGSINEARQIFDKMVDRDVV-------SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266 (476)
Q Consensus 194 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 266 (476)
..+..+|.+.|-+.|..|.|+++-+.+.+.... ....|..-|...|-+|.|+.+|..+.+.| ..-......+
T Consensus 69 ~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqL 147 (389)
T COG2956 69 FEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQL 147 (389)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHH
Confidence 344445556666666666666666555432211 22334455666666666666666665543 2233455556
Q ss_pred HHHHhccccHHHHHHHHHHHHHhCCCCch----hhHHHHHHHhhhcCChhhHHHHHccCCCCC---hhhHHHHHHHHHhc
Q 038936 267 LNACADHAAEELGKQVHGYMTRIGYDPYS----FAASALVHMYSKCGNVENSKKVFNGMPRPD---LVSWTSLIAGYAQN 339 (476)
Q Consensus 267 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~ 339 (476)
+..|-...+|++|+.+-+++.+.+-.+.. ..|.-+...+....+.+.|...+.+..+.| +..--.+...+...
T Consensus 148 l~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~ 227 (389)
T COG2956 148 LNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAK 227 (389)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhc
Confidence 66666666666666666666655433321 234445555556667777777777776533 33444566778889
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 038936 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 419 (476)
|++..|++.++...+.+..--+.+...|..+|...|+.++...++.++.+. .+....-..+.+......-.+.|...
T Consensus 228 g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~ 304 (389)
T COG2956 228 GDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAY 304 (389)
T ss_pred cchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHH
Confidence 999999999999888765545567788888899999999999999888864 44454555565555555555666655
Q ss_pred Hh-hCCCCCcHHHHHHHHHHHHhc---CChHHHHHHHHHHHH
Q 038936 420 IS-KMPMKPDKFLWASLLGGCRIH---GNLDLAKRAAEALFE 457 (476)
Q Consensus 420 ~~-~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 457 (476)
+. .+..+|+...+..++...... |..++....++.++.
T Consensus 305 l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 305 LTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 54 467789988888888765533 556777777777765
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-12 Score=112.97 Aligned_cols=388 Identities=11% Similarity=0.051 Sum_probs=240.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHccc--cc-chHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcch---HHHHHHHHHhcCCh
Q 038936 66 CLLDMYAKCGNISDAQTLFDEMQE--RD-VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFS---WTAMISGYVRYNQP 139 (476)
Q Consensus 66 ~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~ 139 (476)
....-|.+.|++++|++.|.+..+ |+ +..|.....+|...|+|+++.+--.+..+-++.- +.--..++-..|++
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccH
Confidence 344556688899999999998875 66 7788888999999999999888877777655543 33344566677777
Q ss_pred hHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHH-cC--CCchHHHHHHHHHHHHcCCCHHHHHHH
Q 038936 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMR-TG--FDSDEVVWSALSDMYGKCGSINEARQI 216 (476)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 216 (476)
.+|+.=..-..- .+...+..+--.+=+.+- ..+....++-.+ .+ +-|+.....+....+... +.
T Consensus 200 ~eal~D~tv~ci-~~~F~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~--~~----- 266 (606)
T KOG0547|consen 200 DEALFDVTVLCI-LEGFQNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD--PK----- 266 (606)
T ss_pred HHHHHhhhHHHH-hhhcccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc--cc-----
Confidence 777653332221 111111111111111111 112222222222 22 123332222222221100 00
Q ss_pred HHhhcccchhhHHHHHHHHH----h-cCChhHHHHHHHHHHHcC-CCC-----CHh----hHHHHHH--HHhccccHHHH
Q 038936 217 FDKMVDRDVVSWTAMIGRYF----Q-EGRREEGFALFSELIKSG-IRP-----NAF----TFAGVLN--ACADHAAEELG 279 (476)
Q Consensus 217 ~~~~~~~~~~~~~~l~~~~~----~-~~~~~~a~~~~~~~~~~~-~~~-----~~~----~~~~l~~--~~~~~~~~~~a 279 (476)
..+..+.....-.+..++. . ...+..|...+.+-.... ..+ |.. .-..++. .+.-.|+.-.+
T Consensus 267 -~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 267 -PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred -ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 0000001111111111111 1 112344444333321110 011 111 1111121 23346788888
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356 (476)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 356 (476)
..-++..+..... +...|-.+..+|....+.++....|+...+ .++.+|..-.+.+.-.+++++|..-|++.++.
T Consensus 346 ~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L- 423 (606)
T KOG0547|consen 346 QEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL- 423 (606)
T ss_pred hhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 8888888887533 333366777889999999999999998875 46778999999999999999999999999985
Q ss_pred CCC-cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc------
Q 038936 357 TQP-DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD------ 428 (476)
Q Consensus 357 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~------ 428 (476)
.| +...|..+..+..+.+.++++...|++...+ +|..+++|+..+.++..++++++|.+.|+.+ ...|+
T Consensus 424 -~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v 500 (606)
T KOG0547|consen 424 -DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV 500 (606)
T ss_pred -ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc
Confidence 45 4456777777778999999999999999985 6777888999999999999999999999985 44443
Q ss_pred ---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 429 ---KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 429 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
+.+...++..- -.+++..|+.+++++++++|....++..|+.+-
T Consensus 501 ~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~ 547 (606)
T KOG0547|consen 501 NAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFE 547 (606)
T ss_pred cchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 22333333222 338999999999999999999999999999764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.6e-12 Score=105.29 Aligned_cols=286 Identities=14% Similarity=0.071 Sum_probs=182.8
Q ss_pred cCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHH
Q 038936 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215 (476)
Q Consensus 136 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 215 (476)
.|+|.+|+++...-.+ . ..-....|..-..+.-..|+.+.+-.++.+..+..-.++........+.....|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae-~-~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAE-H-GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhh-c-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4666666666655443 1 1112223334444444555555555555555444323444444444555555555555555
Q ss_pred HHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCC
Q 038936 216 IFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292 (476)
Q Consensus 216 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 292 (476)
-++++.+ .++........+|.+.|++.....++..+.+.|.-.++..-.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~---------------------------- 226 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR---------------------------- 226 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------
Confidence 5444422 233344444555555555555555555555554332221100
Q ss_pred CchhhHHHHHHHhhhcCChhhHHHHHccCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 038936 293 PYSFAASALVHMYSKCGNVENSKKVFNGMP---RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369 (476)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 369 (476)
.-..++..+++-....+..+.-...++..+ +.++..-..++.-+.+.|+.++|.++.++..+++..|+... .-
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~ 302 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LI 302 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HH
Confidence 001233444444444444555555666665 35677777888889999999999999999999887776222 23
Q ss_pred HHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHHHHHHHHHhcCChHHH
Q 038936 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 370 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A 448 (476)
.+.+.++...-++..++....++..| ..+..|+..|.+.+.|.+|.+.|+.. +..|+...|..+..++...|+..+|
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 46778888888888888887655544 67999999999999999999999985 7889999999999999999999999
Q ss_pred HHHHHHHHH
Q 038936 449 KRAAEALFE 457 (476)
Q Consensus 449 ~~~~~~~~~ 457 (476)
.+..++.+-
T Consensus 381 ~~~r~e~L~ 389 (400)
T COG3071 381 EQVRREALL 389 (400)
T ss_pred HHHHHHHHH
Confidence 999999886
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-11 Score=107.84 Aligned_cols=437 Identities=12% Similarity=0.056 Sum_probs=287.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH--cccccchHHHHHHHH
Q 038936 24 PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE--MQERDVCSYNTMISG 101 (476)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~l~~~ 101 (476)
.+..-+..+.+-+..+.++..|.-+-++....+. |+...--+++++.-.|++.+|..+... +.+.|..+.......
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKC 91 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 3455566677777777888888888887776653 444444567788888888888877665 345677777888888
Q ss_pred HHhcCCHHHHHHHHhcCCC---------CC--------cch----HHHHH-------HHHHhcCChhHHHHHHHHHHhcc
Q 038936 102 FTKGGSLEQARNLFDEMPQ---------RD--------NFS----WTAMI-------SGYVRYNQPIEALDLYRMMQNFE 153 (476)
Q Consensus 102 ~~~~g~~~~a~~~~~~~~~---------~~--------~~~----~~~l~-------~~~~~~~~~~~a~~~~~~~~~~~ 153 (476)
+.+..++++|..++.+... .+ ... -+.-. ..|....+.++|...|.+...
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~-- 169 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL-- 169 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh--
Confidence 8888999999888884321 01 000 11111 223333445555555555442
Q ss_pred CCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCC----CchHHHHHHHHHHHHcCCCHHHHHHHH--Hhh--cccch
Q 038936 154 NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF----DSDEVVWSALSDMYGKCGSINEARQIF--DKM--VDRDV 225 (476)
Q Consensus 154 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~--~~~--~~~~~ 225 (476)
.|...+..+...... ..-.+.+.++.+..... ..+......+.....-...-+.....- +.+ .+.++
T Consensus 170 ---~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~ 244 (611)
T KOG1173|consen 170 ---ADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENL 244 (611)
T ss_pred ---cchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcH
Confidence 222222222111110 01111111111111100 011111111111110000000000000 000 11234
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHh
Q 038936 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305 (476)
Q Consensus 226 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (476)
........-+...+++.+..++.+...+.. ++....+..-|.++...|+...-..+-..+++. .|..+.+|-++.-.|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHH
Confidence 444455667778899999999999998875 566666666677888888887777777777776 377788899999999
Q ss_pred hhcCChhhHHHHHccCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHH
Q 038936 306 SKCGNVENSKKVFNGMPRPDL---VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382 (476)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 382 (476)
...|+.++|++.|.+...-|. ..|-.+..+|.-.|..+.|+..+...-+.- +-....+..+..-|.+.+....|.+
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHH
Confidence 999999999999999886443 479999999999999999999998887642 2222233345666888999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCC--------CCC-cHHHHHHHHHHHHhcCChHHHHHHHH
Q 038936 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP--------MKP-DKFLWASLLGGCRIHGNLDLAKRAAE 453 (476)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 453 (476)
+|.++... .|.|+.+.+-++......+.+.+|...|+... .++ -.++++.++.++.+.+.+++|+..++
T Consensus 402 Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 402 FFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 99999853 35567778888888889999999999998751 112 34578999999999999999999999
Q ss_pred HHHHcCCCCchhHHHHHHhhh
Q 038936 454 ALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 454 ~~~~~~p~~~~~~~~l~~~y~ 474 (476)
+++.+.|.++.+|..+|.+|.
T Consensus 480 ~aL~l~~k~~~~~asig~iy~ 500 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYH 500 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHH
Confidence 999999999999999999985
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-11 Score=102.86 Aligned_cols=276 Identities=12% Similarity=0.053 Sum_probs=185.8
Q ss_pred hcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHH
Q 038936 104 KGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKE 180 (476)
Q Consensus 104 ~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 180 (476)
..|+|..|+++..+-.+. ....|..-..+--+.|+.+.+-.++.+..+ ....++...+.+........|++..|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae-~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAE-LAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 479999999999886553 233455555777789999999999999986 4345566667777888899999999999
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccch-----------hhHHHHHHHHHhcCChhHHHHHHH
Q 038936 181 IHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV-----------VSWTAMIGRYFQEGRREEGFALFS 249 (476)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~ 249 (476)
-...+.+.+ +.++.+......+|.+.|++.....++..+.+... .+|..++.-....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999998887 56677888999999999999999999999976432 245556655555555555555555
Q ss_pred HHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCC---CCCh
Q 038936 250 ELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP---RPDL 326 (476)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~ 326 (476)
..... .+.++..-..++.-+.+.|+.++|.++..+..+.+..|... ..-...+-++.+.-++..++.. ..++
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 54433 34555566666777777888888888888877776666511 1112233333333333333222 2334
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 388 (476)
..+.+|...|.+.+.|.+|.+.|+...+ ..|+..+|..+..++.+.|+..+|.++.++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 5555666666666666666666665555 34666666666666666666666666665555
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-11 Score=98.83 Aligned_cols=262 Identities=10% Similarity=0.115 Sum_probs=156.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc-ccc------hHHHHHHHHHHhcCCHHH
Q 038936 38 QNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE-RDV------CSYNTMISGFTKGGSLEQ 110 (476)
Q Consensus 38 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~l~~~~~~~g~~~~ 110 (476)
-.+++++|.+.|-+|.+.. +-+.++..+|.+.|-+.|..+.|+++-+.+.+ ||. .....|..-|...|-++.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3467788888888887754 22556667777888888888888888877664 443 233455666777888888
Q ss_pred HHHHHhcCCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCc---hHHHHHHHHHHhhhhhhhHHHHHHH
Q 038936 111 ARNLFDEMPQRD---NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNK---FTLSSVLSAVSAIQCLRLGKEIHGY 184 (476)
Q Consensus 111 a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~ 184 (476)
|+.+|..+.+.+ ......|+..|-...+|++|++.-+++....+.+-+. ..|.-+...+....+++.|...++.
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 888888777633 3345667777888888888888877776622222221 2344455555555666666666666
Q ss_pred HHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchh----hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 038936 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV----SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA 260 (476)
Q Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 260 (476)
..+.+ +.....-..+.+.....|+++.|++.++.+.+.|+. +...|..+|...|+.++....+..+.+.. +..
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 66554 334444455666666777777777777776665543 34555666667777776666666666543 222
Q ss_pred hhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHh
Q 038936 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305 (476)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (476)
..-..+........-.+.|..++.+-.+. .|+...+..++...
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 22222222222333334444443333332 45555555555443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.8e-10 Score=102.34 Aligned_cols=426 Identities=13% Similarity=0.055 Sum_probs=224.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc----c-cchHHHHH
Q 038936 24 PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE----R-DVCSYNTM 98 (476)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~l 98 (476)
.++..|..+.-++.+.|+++.+-+.|++....-+ ...+.|..+...|...|.-..|..+++.... | ++..+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 4555555555555566666666666666554322 2445555555556666666666666655432 1 12222222
Q ss_pred HHHHH-hcCCHHHHHHHHhcCCC--------CCcchHHHHHHHHHh-----------cCChhHHHHHHHHHHhccCCCCC
Q 038936 99 ISGFT-KGGSLEQARNLFDEMPQ--------RDNFSWTAMISGYVR-----------YNQPIEALDLYRMMQNFENSVSN 158 (476)
Q Consensus 99 ~~~~~-~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~~~ 158 (476)
-..|. +.+..++++..-.++.. ..+..|..+.-+|.. .....++++.+++..+..+..|+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 22222 23444444433333221 123334333333321 11233455555555544444443
Q ss_pred chHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHH---HHHH
Q 038936 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAM---IGRY 235 (476)
Q Consensus 159 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~ 235 (476)
...|..+ -++..++.+.|.+..++.++.+-..+...|..+.-.+...+++.+|+.+.+...+.....++.+ +..-
T Consensus 480 ~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 480 VIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred HHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 3333222 3344555666666666665554445555555555555566666666666655543222222111 2222
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHh--CCCCchhhHHHHHHHhhhcC---C
Q 038936 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI--GYDPYSFAASALVHMYSKCG---N 310 (476)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~---~ 310 (476)
..-++.++++.....+... --+.... ...++-....+....+.-. .......++..+.......+ .
T Consensus 558 ~~~~~~e~~l~t~~~~L~~--we~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLAL--WEAEYGV-------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hhcccHHHHHHHHHHHHHH--HHhhhhH-------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 2344445544444443321 0000000 0001100111111111000 00111222222222221111 1
Q ss_pred hhhHHHHHccCCCCCh------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHH
Q 038936 311 VENSKKVFNGMPRPDL------VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384 (476)
Q Consensus 311 ~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 384 (476)
.+..+..+.....|+. ..|......+.+.++.++|...+.+..... +.....|......+...|...+|.+.|
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 1111111111122332 245566777889999999998888887752 345566776777888899999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH--HHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAED--VISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
..+..- -|.++....+++.++.+.|+..-|.. ++..+ ...| ++..|..++..+...|+.++|.+.|..++++++
T Consensus 708 ~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 708 LVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 988852 23456778999999999998877777 77775 5555 788999999999999999999999999999999
Q ss_pred CCch
Q 038936 461 ENPA 464 (476)
Q Consensus 461 ~~~~ 464 (476)
.+|.
T Consensus 786 S~PV 789 (799)
T KOG4162|consen 786 SNPV 789 (799)
T ss_pred CCCc
Confidence 8875
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.7e-09 Score=95.58 Aligned_cols=378 Identities=15% Similarity=0.215 Sum_probs=226.6
Q ss_pred hhhhhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038936 3 DILCNQRRLKEALQILHQIS-----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNI 77 (476)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 77 (476)
+.+.++|+.......|+.+. ......|...+.-....+-++-+.++|+..++.. | ..-.-.+..++..+++
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~--P--~~~eeyie~L~~~d~~ 185 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA--P--EAREEYIEYLAKSDRL 185 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC--H--HHHHHHHHHHHhccch
Confidence 34567777777777777763 3344567777777777788888888888887742 2 3355667777788888
Q ss_pred HHHHHHHHHccc--------------------------c--------------------c--chHHHHHHHHHHhcCCHH
Q 038936 78 SDAQTLFDEMQE--------------------------R--------------------D--VCSYNTMISGFTKGGSLE 109 (476)
Q Consensus 78 ~~A~~~~~~~~~--------------------------~--------------------~--~~~~~~l~~~~~~~g~~~ 109 (476)
++|-+.+..+.. | | ...|++|.+.|++.|.++
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~e 265 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFE 265 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhH
Confidence 888877776652 0 1 124777777788888888
Q ss_pred HHHHHHhcCCCC--CcchHHHHHHHHHhc----------------C------ChhHHHHHHHHHHhccCC----------
Q 038936 110 QARNLFDEMPQR--DNFSWTAMISGYVRY----------------N------QPIEALDLYRMMQNFENS---------- 155 (476)
Q Consensus 110 ~a~~~~~~~~~~--~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~~~~~~~~~---------- 155 (476)
+|..+|++.... .+.-+..+-++|+.. | +++-.+.-|+.+....+.
T Consensus 266 karDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn 345 (835)
T KOG2047|consen 266 KARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN 345 (835)
T ss_pred HHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence 888888776653 222233333333221 1 112222333333321111
Q ss_pred CCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCc------hHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchh---
Q 038936 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS------DEVVWSALSDMYGKCGSINEARQIFDKMVDRDVV--- 226 (476)
Q Consensus 156 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--- 226 (476)
+-+..++..-.. ...|+..+....+.++++.- .| -...|..+.+.|-..|+++.|..+|++..+-+..
T Consensus 346 ~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 346 PHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred CccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 111122222111 12344455555566655431 22 1345778888999999999999999998764433
Q ss_pred ----hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-----------------CHhhHHHHHHHHhccccHHHHHHHHHH
Q 038936 227 ----SWTAMIGRYFQEGRREEGFALFSELIKSGIRP-----------------NAFTFAGVLNACADHAAEELGKQVHGY 285 (476)
Q Consensus 227 ----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 285 (476)
+|......-.+..+++.|+++.+......-.| +...|...+..-...|-++....+++.
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34444455556778888888887765422111 112344444444566788888889999
Q ss_pred HHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC----CCh-hhHHHHHHHHHh---cCChHHHHHHHHHHHHcCC
Q 038936 286 MTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR----PDL-VSWTSLIAGYAQ---NGMPDKALEYFELLLKSGT 357 (476)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~ 357 (476)
+.+..+.. +.+.-.....+-.+.-++++.+++++-.. |++ ..|+..+.-+.+ ....+.|..+|++.++ |.
T Consensus 503 iidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~C 580 (835)
T KOG2047|consen 503 IIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GC 580 (835)
T ss_pred HHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cC
Confidence 88876433 22222333344556668889999988774 554 367766655543 2467899999999998 67
Q ss_pred CCcHHHHHHHHHH--HhccCchhhHHHHHHHHHH
Q 038936 358 QPDHIVFVGVLTA--CTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 358 ~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~ 389 (476)
+|...-+..|+.+ -.+.|....|+.+++++..
T Consensus 581 pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 581 PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 7665433333332 2345777778888777654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-11 Score=101.53 Aligned_cols=416 Identities=11% Similarity=0.096 Sum_probs=201.7
Q ss_pred hhhhhcCCHHHHHHHHHhcC---CCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 038936 3 DILCNQRRLKEALQILHQIS---HPSPSIYSS-LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78 (476)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 78 (476)
.-+..++++..|+.+++... .......+. +..++.+.|++++|...|+.+.... .|+...+..|...+.-.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 44677889999999998764 111112232 4456678999999999999887754 556677777777777789999
Q ss_pred HHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCC
Q 038936 79 DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158 (476)
Q Consensus 79 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 158 (476)
+|..+-....+ ++..-..+...-.+.|+-++-..+-+.+.... .--.++.......-.+.+|++++..... ..|+
T Consensus 109 eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~---dn~e 183 (557)
T KOG3785|consen 109 EAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQ---DNPE 183 (557)
T ss_pred HHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHh---cChh
Confidence 99988777543 12222233333334444333333333332211 1111222233333344455555554443 1222
Q ss_pred chHHHHHHH-HHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcC--C---------------------------
Q 038936 159 KFTLSSVLS-AVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC--G--------------------------- 208 (476)
Q Consensus 159 ~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~--------------------------- 208 (476)
-...+.-+. ++.+..-++.+.++++-.++. ++.+....|.......+. |
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH 262 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH 262 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence 222222222 223334444444444433322 122222222222211111 1
Q ss_pred ------CHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH-----HhccccHH
Q 038936 209 ------SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA-----CADHAAEE 277 (476)
Q Consensus 209 ------~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~ 277 (476)
+-+.|++++-.+.+.=+...-.|+--|.++++..+|..+.+++.. ..|-......+..+ ........
T Consensus 263 NLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred CeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 112233333222222223333444456667777777766655421 12222222222211 11122344
Q ss_pred HHHHHHHHHHHhCCCCchh-hHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038936 278 LGKQVHGYMTRIGYDPYSF-AASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLL 353 (476)
Q Consensus 278 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 353 (476)
.|.+.|+..-+.+..-|.. ---++...+.-..++++++..++.+.. .|...--.+.++++..|++.+|+++|-...
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc
Confidence 5556665555544333221 222344444455566666666666553 222222235667777777777777776655
Q ss_pred HcCCCCcHHHH-HHHHHHHhccCchhhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHH
Q 038936 354 KSGTQPDHIVF-VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA-DHYACIVDLLARSGRFHEAEDVISKM-PMKPDKF 430 (476)
Q Consensus 354 ~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 430 (476)
...++ |..+| ..+.++|.+.+.++.|++++-++- .+.+. .....++.-|.+++.+=-|-+.|+.+ ...|++.
T Consensus 421 ~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~----t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 421 GPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN----TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred Chhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC----CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 43333 33333 344556677777777766553322 11122 22334455566667666666666655 3445554
Q ss_pred HH
Q 038936 431 LW 432 (476)
Q Consensus 431 ~~ 432 (476)
.|
T Consensus 496 nW 497 (557)
T KOG3785|consen 496 NW 497 (557)
T ss_pred cc
Confidence 44
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=106.45 Aligned_cols=236 Identities=14% Similarity=0.127 Sum_probs=192.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhc
Q 038936 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308 (476)
Q Consensus 229 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (476)
+.+.++|.+.|-+.+|.+.++..++. .|-..||..+-..|.+..+++.|..++.+-.+. .|-+........+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56788999999999999998888775 566778888888999999999999998887765 244444455667888888
Q ss_pred CChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHH
Q 038936 309 GNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385 (476)
Q Consensus 309 ~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 385 (476)
++.++|.++++...+ .++...-.+...|.-.++++-|+.++++++..|+ -++..|..+.-+|...+++|-++..|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998876 3445555666778889999999999999999996 477889999999999999999999999
Q ss_pred HHHHhcCCCC--ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038936 386 SIKEKHGLTY--TADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 386 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 461 (476)
++... --.| -.++|..++......|++.-|.+.|+-. ...| +...++.+.-.-.+.|+.++|..++..+....|+
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 98864 2233 3567999999999999999999999986 3344 5568899988888999999999999999999997
Q ss_pred CchhHHHH
Q 038936 462 NPATYVTM 469 (476)
Q Consensus 462 ~~~~~~~l 469 (476)
-.....+|
T Consensus 462 m~E~~~Nl 469 (478)
T KOG1129|consen 462 MAEVTTNL 469 (478)
T ss_pred ccccccce
Confidence 55444444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-09 Score=99.61 Aligned_cols=379 Identities=13% Similarity=0.085 Sum_probs=248.5
Q ss_pred ccchHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHH
Q 038936 90 RDVCSYNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVL 166 (476)
Q Consensus 90 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 166 (476)
.++..|..+.-++.+.|+++.+.+.|++...- ....|+.+...+.-.|.-..|..+++.-......+++...+....
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 46778888888899999999999999987653 455788888888889999999999888775333344445555555
Q ss_pred HHHH-hhhhhhhHHHHHHHHHHc--CC--CchHHHHHHHHHHHHcCC-----------CHHHHHHHHHhhccc---chhh
Q 038936 167 SAVS-AIQCLRLGKEIHGYIMRT--GF--DSDEVVWSALSDMYGKCG-----------SINEARQIFDKMVDR---DVVS 227 (476)
Q Consensus 167 ~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~---~~~~ 227 (476)
..|. +.+.++++..+-.+++.. +. ......|..+.-+|...- ...++++.+++..+. |+..
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 5553 456677777776666652 11 123344555554444321 245677778877543 3434
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhh
Q 038936 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307 (476)
Q Consensus 228 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 307 (476)
...+.--|...++.+.|.+..++..+.+-..+...|..+.-.+...+++..|+.+.+.....- +.|-.....-++.-..
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhh
Confidence 344455677788999999999999998667888899999999999999999999988765541 1111111111222222
Q ss_pred cCChhhHHHHHccCCC--------------------------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038936 308 CGNVENSKKVFNGMPR--------------------------------PDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 355 (476)
.++.+++......+.. ..+.++..+..-....+ +.+..-.. +...
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~s 636 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-LPSS 636 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-cCcc
Confidence 3444444433222110 01112222211111110 00000000 1111
Q ss_pred CCC--CcH------HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCC
Q 038936 356 GTQ--PDH------IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMK 426 (476)
Q Consensus 356 ~~~--~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 426 (476)
.+. |+. ..|......+.+.+..++|.-++.++.. ..+.....|+..+..+...|++++|.+.|..+ ...
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 112 221 2344556677888999999988888875 34556777888889999999999999999885 566
Q ss_pred C-cHHHHHHHHHHHHhcCChHHHHH--HHHHHHHcCCCCchhHHHHHHhhh
Q 038936 427 P-DKFLWASLLGGCRIHGNLDLAKR--AAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 427 p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
| ++....+++..+...|+..-|.. ++..+++++|.|+.+|..||.++-
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k 765 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFK 765 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 6 45688999999999999888888 999999999999999999998864
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-09 Score=89.86 Aligned_cols=409 Identities=11% Similarity=0.107 Sum_probs=254.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc---ccchHHHHHHHHHHhcCCHH
Q 038936 33 IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE---RDVCSYNTMISGFTKGGSLE 109 (476)
Q Consensus 33 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 109 (476)
+.-+...+++..|..+++.-...+-+-...+-.-+..++.+.|++++|...+..+.+ ++...+..|.-.+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 556677889999999999877655433333444455677799999999999998775 55677888888888889999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcC
Q 038936 110 QARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189 (476)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 189 (476)
+|..+-.+..+ ++..-..+...-.+.++-++-..+-..+.. ....-..+.......-.+.+|.+++...+..+
T Consensus 109 eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 109 EAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999887653 333444555666677887777666555543 22344556666667778999999999988664
Q ss_pred CCchHHHHHH-HHHHHHcCCCHHHHHHHHHhhcc--cc-hhhHHHHHHHHHhc--CCh----------------------
Q 038936 190 FDSDEVVWSA-LSDMYGKCGSINEARQIFDKMVD--RD-VVSWTAMIGRYFQE--GRR---------------------- 241 (476)
Q Consensus 190 ~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~--~~~---------------------- 241 (476)
|+-...|. +.-+|.+..-++-+.+++..-.. || +...|.......+. |+.
T Consensus 182 --~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l 259 (557)
T KOG3785|consen 182 --PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL 259 (557)
T ss_pred --hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH
Confidence 33333332 34566677777777777665533 22 22333332222221 111
Q ss_pred -----------hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhc--
Q 038936 242 -----------EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC-- 308 (476)
Q Consensus 242 -----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 308 (476)
+.|++++-.+.+. .|. .-..++-.+.+.+++.+|..+.+++. |.++.-|-.-.-.+...
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQ 331 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQ 331 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhh
Confidence 1222222222110 111 11223334667778888777766543 22222222111222222
Q ss_pred -----CChhhHHHHHccCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchh
Q 038936 309 -----GNVENSKKVFNGMPR-----PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVD 378 (476)
Q Consensus 309 -----~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 378 (476)
....-|...|+-.-. .+..--..+...+.-..++++.+..+.....--...|...| .+..+.+..|.+.
T Consensus 332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~ 410 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYV 410 (557)
T ss_pred hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChH
Confidence 234445555554432 22223344555555666788888888777765333333344 4788899999999
Q ss_pred hHHHHHHHHHHhcCCCCChhhH-HHHHHHHHhcCChhhHHHHHhhCCCCCcHHHH-HHHHHHHHhcCChHHHHHHHHHHH
Q 038936 379 KGLQYFHSIKEKHGLTYTADHY-ACIVDLLARSGRFHEAEDVISKMPMKPDKFLW-ASLLGGCRIHGNLDLAKRAAEALF 456 (476)
Q Consensus 379 ~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~ 456 (476)
+|.++|-++... .+ .+..+| ..|+++|.++++.+-|++++-++..+.+..+. ..+..-|.+.+++=-|-+.|+.+.
T Consensus 411 eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 411 EAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 999999777632 22 344455 45788999999999999999998755555544 445566778899989999999988
Q ss_pred HcCCC
Q 038936 457 EIEPE 461 (476)
Q Consensus 457 ~~~p~ 461 (476)
.++|.
T Consensus 489 ~lDP~ 493 (557)
T KOG3785|consen 489 ILDPT 493 (557)
T ss_pred ccCCC
Confidence 88884
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.3e-11 Score=101.35 Aligned_cols=200 Identities=12% Similarity=0.103 Sum_probs=120.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHh
Q 038936 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305 (476)
Q Consensus 226 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (476)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...++...+.. +
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~------------- 96 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-P------------- 96 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C-------------
Confidence 345555555566666666666666555432 2223334444444444455555555544444332 1
Q ss_pred hhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCchhhHHHHH
Q 038936 306 SKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP-DHIVFVGVLTACTHAGLVDKGLQYF 384 (476)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 384 (476)
.+...+..+...+...|++++|...+++..+....| ....+..+..++...|++++|.+.+
T Consensus 97 ------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 97 ------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred ------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 223345556666677777777777777776542212 2345555667777788888888888
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PM-KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
++.... .+.+...+..++..+...|++++|.+.++++ .. +++...+..++..+...|+.++|....+.+.+..|
T Consensus 159 ~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 159 TRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 877754 2334556777778888888888888887775 22 23445555666667777888888888777766544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.7e-08 Score=87.34 Aligned_cols=94 Identities=12% Similarity=0.143 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHh
Q 038936 26 PSIYSSLIQFCRQNRALEEGKKVHSHLKSS-GFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTK 104 (476)
Q Consensus 26 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 104 (476)
+..|-..++.+..+|+.......|+..+.. -+......|...+......|-++-+..+++...+-++..-...+..++.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 345556666667777777777777776654 2223345666666666677777777888877777666667777777778
Q ss_pred cCCHHHHHHHHhcCC
Q 038936 105 GGSLEQARNLFDEMP 119 (476)
Q Consensus 105 ~g~~~~a~~~~~~~~ 119 (476)
.+++++|.+.+..+.
T Consensus 182 ~d~~~eaa~~la~vl 196 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVL 196 (835)
T ss_pred ccchHHHHHHHHHhc
Confidence 888888777777665
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.6e-11 Score=112.20 Aligned_cols=143 Identities=13% Similarity=0.010 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 038936 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFELL 352 (476)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 352 (476)
.++|...++++.+.+ +.+...+..+..++...|++++|...|+++.+ | +...+..+...+...|++++|+..+++.
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 444555555444443 33344444444444455555555555554442 2 1233444444455555555555555555
Q ss_pred HHcCCCCcH-HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 353 LKSGTQPDH-IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY-TADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 353 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
.+.+ |+. ..+..++..+...|++++|+..++++... .+| ++..+..++.++...|+.++|...+.++
T Consensus 399 l~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 399 LKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4432 221 11122222333344555555555544432 112 2223444444455555555555555443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-10 Score=98.78 Aligned_cols=197 Identities=14% Similarity=0.083 Sum_probs=128.3
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038936 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267 (476)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 267 (476)
......+..+...+...|++++|...+++..+. +...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 344677888999999999999999999988543 35567888899999999999999999998865 44556677777
Q ss_pred HHHhccccHHHHHHHHHHHHHhCCC-CchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHH
Q 038936 268 NACADHAAEELGKQVHGYMTRIGYD-PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKAL 346 (476)
Q Consensus 268 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 346 (476)
..+...|+++.|...++...+.... ..... +..+...+...|++++|.
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------------------------------~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARS-------------------------------LENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHH-------------------------------HHHHHHHHHHcCCHHHHH
Confidence 7888889999999988887764211 11222 333444455555555555
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
..+++..+.. +.+...+..+...+...|++++|...+++.... .+.+...+..++..+...|+.++|..+.+.
T Consensus 156 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 156 KYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5555555432 122334445555555556666666655555543 233344444455555555555555555444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.2e-11 Score=112.40 Aligned_cols=244 Identities=10% Similarity=-0.013 Sum_probs=171.6
Q ss_pred CCHHHHHHHHHhhcccch---hhHHHHHHHHH---------hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccc
Q 038936 208 GSINEARQIFDKMVDRDV---VSWTAMIGRYF---------QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275 (476)
Q Consensus 208 ~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (476)
+++++|...|++..+.++ ..|..+..++. ..+++++|...+++..+.+ +.+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 356788899988866433 34555554443 2344789999999998875 4466677777777888999
Q ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CChh-hHHHHHHHHHhcCChHHHHHHHHHH
Q 038936 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLV-SWTSLIAGYAQNGMPDKALEYFELL 352 (476)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~ 352 (476)
+++|...++++.+.+ |.+...+..+..++...|++++|...+++..+ |+.. .+..++..+...|++++|+..++++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999999999886 56677788888999999999999999999875 4322 3334455577789999999999998
Q ss_pred HHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC----CCCCc
Q 038936 353 LKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM----PMKPD 428 (476)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~ 428 (476)
.+...+-+...+..+..++...|+.++|.+.++++... .+.+......+...|...|+ +|...++++ ...|.
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDN 508 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhc
Confidence 87542223445667778888999999999999887653 22334445666667777774 777766664 23333
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 429 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
...+..+ .+.-.|+.+.+... +++.+.++
T Consensus 509 ~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 509 NPGLLPL--VLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred CchHHHH--HHHHHhhhHHHHHH-HHhhccch
Confidence 3333333 36667777777766 77766543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-08 Score=90.58 Aligned_cols=444 Identities=15% Similarity=0.123 Sum_probs=272.5
Q ss_pred hcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 038936 7 NQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83 (476)
Q Consensus 7 ~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (476)
..+++...+++.+.+. +....+.....-.+...|+.++|........+..+. +...|..+.-.+-...++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHH
Confidence 4456666666666664 344455555555566778889998888877776543 677788877777777899999999
Q ss_pred HHHccc---ccchHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCC
Q 038936 84 FDEMQE---RDVCSYNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157 (476)
Q Consensus 84 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 157 (476)
|..... .|...|.-+.-.-++.|+++.....-..+.+- ....|..+..+..-.|++..|..+++...+.....|
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~ 177 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP 177 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 988763 45677777777777778877766665555442 445688888888889999999999999887444567
Q ss_pred CchHHHHHHHHH------HhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccch--hhHH
Q 038936 158 NKFTLSSVLSAV------SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDV--VSWT 229 (476)
Q Consensus 158 ~~~~~~~ll~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~ 229 (476)
+...+......+ ...|..+.|.+.+..-... +......-..-...+.+.+++++|..++..+..+++ ..|.
T Consensus 178 s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy 256 (700)
T KOG1156|consen 178 SKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYY 256 (700)
T ss_pred CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHH
Confidence 776665544433 3445556666555443322 111222233456778889999999999999976544 4444
Q ss_pred HH-HHHHHhcCChhHHH-HHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhh
Q 038936 230 AM-IGRYFQEGRREEGF-ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307 (476)
Q Consensus 230 ~l-~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 307 (476)
.. ..++.+..+.-++. .+|....+. .+-.......-+.......-.+....++....+.|+++--..+.++-.-=.+
T Consensus 257 ~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k 335 (700)
T KOG1156|consen 257 EGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK 335 (700)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH
Confidence 43 34443333333333 555555443 1111111111122222233445566677777788876543333322211000
Q ss_pred cCChhh-HHHHHccCC--------------CCChhhHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHH
Q 038936 308 CGNVEN-SKKVFNGMP--------------RPDLVSWT--SLIAGYAQNGMPDKALEYFELLLKSGTQPDHI-VFVGVLT 369 (476)
Q Consensus 308 ~~~~~~-a~~~~~~~~--------------~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~ 369 (476)
..=.++ +..+...+. .|....|. .+++.+-..|+++.|...++..+.+ .|+.+ .|..=.+
T Consensus 336 ~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaR 413 (700)
T KOG1156|consen 336 VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKAR 413 (700)
T ss_pred hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHH
Confidence 100011 111111111 24444444 4677899999999999999999885 46554 4555567
Q ss_pred HHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCCC-cHH--------HHH--HHHHH
Q 038936 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP-DKF--------LWA--SLLGG 438 (476)
Q Consensus 370 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~--------~~~--~l~~~ 438 (476)
.+...|+++.|..+++++.+- -.+|...-..-+.-..++.+.++|.++........ +.. .|- .-+.+
T Consensus 414 I~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~a 491 (700)
T KOG1156|consen 414 IFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEA 491 (700)
T ss_pred HHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHH
Confidence 788999999999999999863 34555544466777889999999999887762111 111 222 23455
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 038936 439 CRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~ 457 (476)
|.+.|++..|++-+..+-+
T Consensus 492 y~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 492 YLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHHHHHHHHHHhhHHH
Confidence 6677777777765555443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-11 Score=98.76 Aligned_cols=232 Identities=15% Similarity=0.119 Sum_probs=194.1
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHhhcc--cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHH-HHHH
Q 038936 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVD--RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFA-GVLN 268 (476)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~ 268 (476)
.|..--+.+.++|.+.|.+.+|++.++...+ +.+.+|-.|-+.|.+..++..|+.++.+-.+. .|-.+|+. -...
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQAR 298 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHH
Confidence 4444557789999999999999999998854 67889999999999999999999999998875 46556654 4556
Q ss_pred HHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHH
Q 038936 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKA 345 (476)
Q Consensus 269 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 345 (476)
.+...++.+.+.++++...+.. +.+.....++...|.-.++++-|+.+++++.+ .++..|+.+.-+|.-.+++|-+
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence 7778899999999999999885 66777777788889999999999999998875 6788999999999999999999
Q ss_pred HHHHHHHHHcCCCCcH--HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 346 LEYFELLLKSGTQPDH--IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 346 ~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
+..|++.+..--.|+. ..|..+.......||+..|.+.|+-.... .+...+.++.|+..-.+.|++++|..++..+
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9999999876544554 35666788888899999999999988863 4556778999999999999999999999987
Q ss_pred C-CCCc
Q 038936 424 P-MKPD 428 (476)
Q Consensus 424 ~-~~p~ 428 (476)
. ..|+
T Consensus 456 ~s~~P~ 461 (478)
T KOG1129|consen 456 KSVMPD 461 (478)
T ss_pred hhhCcc
Confidence 3 3444
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-09 Score=100.39 Aligned_cols=262 Identities=12% Similarity=0.089 Sum_probs=149.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHH
Q 038936 23 HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGF 102 (476)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 102 (476)
.|+..+|..+|..|+..|+.+.|- +|..|.-...+.+...++.++......++.+.+. +|.+.+|..|..+|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAY 93 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHHH
Confidence 455555555555555555555555 5555555544445555555555544455444443 44555555555555
Q ss_pred HhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHH
Q 038936 103 TKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182 (476)
Q Consensus 103 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 182 (476)
...||+.. .+..++ -...+...+...|.-..-..++..+.-..+..||..+ .+......|-++.+.+++
T Consensus 94 r~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 94 RIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred HhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHH
Confidence 55555443 111111 1112223333333333333333332222233333322 222233344455555544
Q ss_pred HHHHHcC-CCchHHHHHHHHHHHHc-CCCHHHHHHHHHhhcc-cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 038936 183 GYIMRTG-FDSDEVVWSALSDMYGK-CGSINEARQIFDKMVD-RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259 (476)
Q Consensus 183 ~~~~~~~-~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 259 (476)
..+-... ..|... .++-+.. ...+++-........+ +++.++...+.+-...|+.+.|..++.+|.+.|++.+
T Consensus 163 ~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred hhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 3321111 011111 1222222 2234444444444444 7888999999999999999999999999999999888
Q ss_pred HhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCC
Q 038936 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310 (476)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 310 (476)
..-|..++-+ .++...++.++.-|...|+.|+..|+...+..+..+|.
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888777755 78888889999999999999999999888877777555
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-09 Score=99.25 Aligned_cols=239 Identities=16% Similarity=0.247 Sum_probs=151.7
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc----------chh-hHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 038936 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDR----------DVV-SWTAMIGRYFQEGRREEGFALFSELIKS----- 254 (476)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 254 (476)
|.-..+...+...|...|+++.|+.+++...+. .+. ..+.+...|...+++++|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 334455666778888888888888887776432 111 2334667788888888888888877642
Q ss_pred CC-CC-CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccC---CCCChh-h
Q 038936 255 GI-RP-NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGM---PRPDLV-S 328 (476)
Q Consensus 255 ~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~-~ 328 (476)
|- .| -..+++.|...|.+.|++++|...++...+. +++. ..|.+. .
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLGASHPEVAAQ 327 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhccChHHHHHH
Confidence 10 11 1123444444556666666665555544332 1110 011221 2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCc----HHHHHHHHHHHhccCchhhHHHHHHHHHHhc----C-CCC-
Q 038936 329 WTSLIAGYAQNGMPDKALEYFELLLKS---GTQPD----HIVFVGVLTACTHAGLVDKGLQYFHSIKEKH----G-LTY- 395 (476)
Q Consensus 329 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~- 395 (476)
++.++..+...+++++|..++++..+. -+.++ ..++..|...|...|++++|.+++++++... + ..+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 344555566667777777766665432 11222 2468888888888899999988888887643 1 122
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHhhC--------CCCCcH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 396 TADHYACIVDLLARSGRFHEAEDVISKM--------PMKPDK-FLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
....++.++..|.+.++..+|.++|.+. +..|++ .+|..|+..|...|+++.|+++.+.++.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2345677888888888888888888764 244554 4889999999999999999999998874
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-08 Score=91.85 Aligned_cols=250 Identities=14% Similarity=0.123 Sum_probs=133.5
Q ss_pred hhhhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHH-HHHHHHHhc----
Q 038936 3 DILCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISN-CLLDMYAKC---- 74 (476)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~---- 74 (476)
..+...|++++|++.++... .............+.+.|+.++|..+|..+++.+ |+...|- .+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 46778899999999988764 3445566677788888999999999999998876 4444444 444444222
Q ss_pred -CChHHHHHHHHHccc--ccchHHHHHHHHHHhcCCHHH-HHHHHhcCCCCCc-chHHHHHHHHHhcCChhHHHHHHHHH
Q 038936 75 -GNISDAQTLFDEMQE--RDVCSYNTMISGFTKGGSLEQ-ARNLFDEMPQRDN-FSWTAMISGYVRYNQPIEALDLYRMM 149 (476)
Q Consensus 75 -g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 149 (476)
.+.+....+++++.+ |.......+.-.+..-..+.. +...+..+..+.+ .+++.+-..|.......-..+++...
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 245666777777654 222222222211221112221 2233333333333 34555544444333333334444443
Q ss_pred Hhc---c----------CCCCCc--hHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHH
Q 038936 150 QNF---E----------NSVSNK--FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214 (476)
Q Consensus 150 ~~~---~----------~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 214 (476)
... . .-+|+. .++..+...+...|+++.|.++++..+++. |-.+..|..-.+.+.+.|++.+|.
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 320 0 012222 133444455556666666666666666553 223455556666666666666666
Q ss_pred HHHHhhcccch---hhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038936 215 QIFDKMVDRDV---VSWTAMIGRYFQEGRREEGFALFSELIKSG 255 (476)
Q Consensus 215 ~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 255 (476)
+.++....-|. ..-+-.+..+.+.|+.++|..++....+.+
T Consensus 249 ~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 249 EAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 66666544332 223334455556666666666666555444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.6e-10 Score=96.92 Aligned_cols=219 Identities=12% Similarity=0.003 Sum_probs=133.1
Q ss_pred ChhHHHHHHHHHHHcC-CCCC--HhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHH
Q 038936 240 RREEGFALFSELIKSG-IRPN--AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKK 316 (476)
Q Consensus 240 ~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 316 (476)
..+.++..+.+++... ..|+ ...|..+...+...|+.+.|...|+...+.. +.+...++.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444555555555321 1111 2234444445566666666666666666654 4456667777777777777777777
Q ss_pred HHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCC
Q 038936 317 VFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393 (476)
Q Consensus 317 ~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 393 (476)
.|++..+ | +...|..+..++...|++++|++.|++..+.+ |+..........+...++.++|.+.+.+.... .
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~ 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK--L 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--C
Confidence 7777654 3 34567777788888889999999998888753 44332222222334567888898888766543 2
Q ss_pred CCChhhHHHHHHHHHhcCChhhH--HHHHhh-CCCC----C-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 038936 394 TYTADHYACIVDLLARSGRFHEA--EDVISK-MPMK----P-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 394 ~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~-~~~~----p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 465 (476)
+|+. +. ........|+..++ .+.+.+ .... | ....|..++..+...|++++|+..|+++++.+|.+..-
T Consensus 196 ~~~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 196 DKEQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred Cccc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 3332 21 22333445665443 222222 1111 2 23478888888999999999999999999999755443
Q ss_pred H
Q 038936 466 Y 466 (476)
Q Consensus 466 ~ 466 (476)
+
T Consensus 273 ~ 273 (296)
T PRK11189 273 H 273 (296)
T ss_pred H
Confidence 3
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.3e-08 Score=87.99 Aligned_cols=125 Identities=7% Similarity=-0.026 Sum_probs=91.2
Q ss_pred hhhhhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 038936 2 IDILCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNIS 78 (476)
Q Consensus 2 i~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 78 (476)
|..+..+|++++|+....++. +.+..++..-+.++.+.+.+++|+.+.+.-... ..+...+..-..+..+.+..+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHH
Confidence 345678899999999999885 677778888888999999999999665543211 111111112223334789999
Q ss_pred HHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHH
Q 038936 79 DAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTA 128 (476)
Q Consensus 79 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 128 (476)
+|+..++...+.+..+...-...+.+.|++++|..+|+.+.+.+...+..
T Consensus 97 ealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 97 EALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 99999996666666677888888999999999999999997654444433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-08 Score=93.71 Aligned_cols=172 Identities=16% Similarity=0.217 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc------------------cchh--hHHHHHHHHH
Q 038936 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD------------------RDVV--SWTAMIGRYF 236 (476)
Q Consensus 177 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------~~~~--~~~~l~~~~~ 236 (476)
.+..++..++..|+|+ ++..+-..|....+.+-..+++..... |... ++..+...|.
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 3455566666677654 444455555544444444444444311 1222 3355567788
Q ss_pred hcCChhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHH
Q 038936 237 QEGRREEGFALFSELIKSGIRPN-AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315 (476)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (476)
..|++++|+.++++.++. .|+ ...|..-...+-+.|++.+|...++.....+ ..|..+-+..+..+.+.|++++|.
T Consensus 206 ~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~ 282 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAE 282 (517)
T ss_pred HhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHH
Confidence 888888888888888876 344 4566667777888888888888888888776 566666677778888888888888
Q ss_pred HHHccCCCCCh----------hhH--HHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 316 KVFNGMPRPDL----------VSW--TSLIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 316 ~~~~~~~~~~~----------~~~--~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
.++....+++. ..| .....+|.+.|++..|++.|....+
T Consensus 283 ~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 283 KTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88887776441 122 3346678888988888877766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-08 Score=93.18 Aligned_cols=365 Identities=15% Similarity=0.151 Sum_probs=232.4
Q ss_pred hhhhhhcCCHHHHHHHHHhcCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 038936 2 IDILCNQRRLKEALQILHQISHPSPS-IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80 (476)
Q Consensus 2 i~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 80 (476)
|.+|-...+|++|+.+-+-...|-.. .-.+.++.+...|+-++|-++-+ + +-.+ .+.++.|.+.|.+-+|
T Consensus 564 igmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~---s-----dgd~-laaiqlyika~~p~~a 634 (1636)
T KOG3616|consen 564 IGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKE---S-----DGDG-LAAIQLYIKAGKPAKA 634 (1636)
T ss_pred HHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhcc---c-----cCcc-HHHHHHHHHcCCchHH
Confidence 44555556666666665555533332 33445566666676666655321 1 1122 3457788888888887
Q ss_pred HHHHHH--cccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCC
Q 038936 81 QTLFDE--MQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158 (476)
Q Consensus 81 ~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 158 (476)
.+.... ..-.|......+..++++..-+++|-.+|+++..++- -+.+|-+-.-+.+|+++-+-.-. ..
T Consensus 635 ~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kaielarfafp-----~e 704 (1636)
T KOG3616|consen 635 ARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAIELARFAFP-----EE 704 (1636)
T ss_pred HHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHHHHHHhhCc-----HH
Confidence 765433 2235666777777778887778888888887765432 23333333334455554432211 11
Q ss_pred chHH-HHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhh--HHHHHHHH
Q 038936 159 KFTL-SSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVS--WTAMIGRY 235 (476)
Q Consensus 159 ~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~l~~~~ 235 (476)
..+. ...-..+...|.++.|..-|-+. ......+.+......|.+|+.+++.+.+++..+ |..+...|
T Consensus 705 vv~lee~wg~hl~~~~q~daainhfiea---------~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhy 775 (1636)
T KOG3616|consen 705 VVKLEEAWGDHLEQIGQLDAAINHFIEA---------NCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHY 775 (1636)
T ss_pred HhhHHHHHhHHHHHHHhHHHHHHHHHHh---------hhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHh
Confidence 1111 01111223344444444333221 122334566677889999999999887766544 67778899
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHH
Q 038936 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315 (476)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (476)
...|+++.|.++|.+. ..++-.+..|.+.|.++.|.++-.+.. |.......|-.-..-.-+.|++.+|.
T Consensus 776 an~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eae 844 (1636)
T KOG3616|consen 776 ANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAE 844 (1636)
T ss_pred ccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhh
Confidence 9999999999988653 234456778889999999988866554 32444555666666678899999999
Q ss_pred HHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC
Q 038936 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395 (476)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 395 (476)
++|-.+..|+.. |..|-+.|..+..+++.++-.. ..-..|...+..-+...|+...|.+.|-++.+
T Consensus 845 qlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d------ 910 (1636)
T KOG3616|consen 845 QLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD------ 910 (1636)
T ss_pred heeEEccCchHH-----HHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh------
Confidence 999998888854 6788999999998888776422 12234666778888889999999888766553
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 396 TADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
|.+-+.+|...+-|++|-++-+.-
T Consensus 911 ----~kaavnmyk~s~lw~dayriakte 934 (1636)
T KOG3616|consen 911 ----FKAAVNMYKASELWEDAYRIAKTE 934 (1636)
T ss_pred ----HHHHHHHhhhhhhHHHHHHHHhcc
Confidence 566667777788888887776653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-09 Score=92.23 Aligned_cols=431 Identities=11% Similarity=0.055 Sum_probs=218.8
Q ss_pred hhhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHH
Q 038936 4 ILCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPG-VFISNCLLDMYAKCGNISD 79 (476)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 79 (476)
+.+..|+++.|+.+|.... ++|...|+.-..++...|++++|++=-.+.++. .|+ ...|+....++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHH
Confidence 4567888999999888763 677888888888888888888888776666664 455 4577788888888888999
Q ss_pred HHHHHHHccc--c-cchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHH-----HHHHhcCChhHHHHHHHHHHh
Q 038936 80 AQTLFDEMQE--R-DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI-----SGYVRYNQPIEALDLYRMMQN 151 (476)
Q Consensus 80 A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~ 151 (476)
|+..|.+-.+ | |...++-+..++ ..+.+. -+... ++..|..+. +.+.....+..-++.+..-..
T Consensus 89 A~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~--~~~~~--~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAA--DQLFT--KPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred HHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHh--hhhcc--CcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 9888888664 2 344555566555 111111 11111 111111111 111111111111111111100
Q ss_pred ccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcC-------CCchHHHHHHHHHHHHcCCCH-HHHHHHHHhhccc
Q 038936 152 FENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG-------FDSDEVVWSALSDMYGKCGSI-NEARQIFDKMVDR 223 (476)
Q Consensus 152 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 223 (476)
.-+...+ .-.++.+.......+.- .+...| ..|.. .........++. ++.. .+.
T Consensus 161 ~l~~~l~---d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~~----~~~~~~~~~~d~~ee~~------~k~ 222 (539)
T KOG0548|consen 161 SLKLYLN---DPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPCK----QEHNGFPIIEDNTEERR------VKE 222 (539)
T ss_pred hhhcccc---cHHHHHHHHHHhcCccc-----cccccccccCCCCCCccc----ccCCCCCccchhHHHHH------HHH
Confidence 0000000 00011110000000000 000000 00000 000000000000 0000 000
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCC------chhh
Q 038936 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP------YSFA 297 (476)
Q Consensus 224 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~ 297 (476)
-..-...+.++..+..+++.|.+.+....+.. .+..-++....++...|.+......-....+.|... -...
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~ 300 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKA 300 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHH
Confidence 01112334444445555555555555555432 222222333334444444444444433333332110 0011
Q ss_pred HHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccCc
Q 038936 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI-VFVGVLTACTHAGL 376 (476)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~ 376 (476)
+..+..+|.+.++++.++..|++...+... -....+....++++...+...-. .|... -...-...+.+.|+
T Consensus 301 ~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 301 LARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred HHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccC
Confidence 112334566667778887777775432111 11122233344455444444332 23331 11222556788899
Q ss_pred hhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 038936 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGGCRIHGNLDLAKRAAEA 454 (476)
Q Consensus 377 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 454 (476)
+..|+..|.+++.+ .|.|...|...+-+|.+.|.+..|++-.+.. ...|+ ...|..-+.++....++++|.+.|++
T Consensus 374 y~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998875 3667788888999999999999998887774 45554 44677777777788899999999999
Q ss_pred HHHcCCCCchhHHHHHHhh
Q 038936 455 LFEIEPENPATYVTMANIY 473 (476)
Q Consensus 455 ~~~~~p~~~~~~~~l~~~y 473 (476)
+++++|++......+...+
T Consensus 452 ale~dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCV 470 (539)
T ss_pred HHhcCchhHHHHHHHHHHH
Confidence 9999998877766665544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.1e-12 Score=76.55 Aligned_cols=50 Identities=30% Similarity=0.626 Sum_probs=47.5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 038936 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH 373 (476)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 373 (476)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-08 Score=83.66 Aligned_cols=288 Identities=11% Similarity=0.055 Sum_probs=180.8
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHH
Q 038936 133 YVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212 (476)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 212 (476)
.+..++...+...+-.+......+-|......+..++...|+.+.+...|+..+..+ +.+........-.+.+.|+.+.
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhh
Confidence 344555555665555555545556666677777778888888888888887766443 2222222233334456677777
Q ss_pred HHHHHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHh
Q 038936 213 ARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289 (476)
Q Consensus 213 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 289 (476)
...+...+.. .+...|..-+......++++.|+.+-++.++.. +-+...+..-...+...+++++|.-.|+..+..
T Consensus 285 ~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 285 DSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 7666666533 333445555556666777888888777777653 223334444444566778888888888777766
Q ss_pred CCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHH-HHHH-hcCChHHHHHHHHHHHHcCCCCcHH-H
Q 038936 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLI-AGYA-QNGMPDKALEYFELLLKSGTQPDHI-V 363 (476)
Q Consensus 290 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~-~ 363 (476)
. |.+...|..|++.|...|++.+|.-.-+...+ .+..+...+. ..+. .-.--++|.+++++.+. +.|+.. .
T Consensus 364 a-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~A 440 (564)
T KOG1174|consen 364 A-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPA 440 (564)
T ss_pred c-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHH
Confidence 4 55677788888888888888877655443332 2222222221 1111 11123677777777666 456543 4
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc
Q 038936 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD 428 (476)
Q Consensus 364 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 428 (476)
.+.+...|...|....++.++++... ..||....+.|++.+.....+++|++.|..+ ...|+
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLI---IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHh---hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 55566677788888888888888774 3677778888888888888888888888774 55554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-09 Score=99.38 Aligned_cols=215 Identities=18% Similarity=0.214 Sum_probs=152.4
Q ss_pred hhHHHHHHHHhccccHHHHHHHHHHHHHh-----CC-CCc-hhhHHHHHHHhhhcCChhhHHHHHccCCC----------
Q 038936 261 FTFAGVLNACADHAAEELGKQVHGYMTRI-----GY-DPY-SFAASALVHMYSKCGNVENSKKVFNGMPR---------- 323 (476)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------- 323 (476)
.+...+...|...|+++.|..+++...+. |. .|. ....+.+...|...+++.+|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555666777777777777777776554 11 122 22334466778888888888888877652
Q ss_pred CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CCcHH-HHHHHHHHHhccCchhhHHHHHHHHHHhcC--C
Q 038936 324 PD-LVSWTSLIAGYAQNGMPDKALEYFELLLKS-----GT-QPDHI-VFVGVLTACTHAGLVDKGLQYFHSIKEKHG--L 393 (476)
Q Consensus 324 ~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~ 393 (476)
|. ..+++.|...|.+.|++++|...+++..+- |. .|... -++.++..|...+++++|..++++..+... +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 21 236777778889999988888887776542 11 22222 366677788999999999999998776432 2
Q ss_pred CC----ChhhHHHHHHHHHhcCChhhHHHHHhhC---------CCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-
Q 038936 394 TY----TADHYACIVDLLARSGRFHEAEDVISKM---------PMKPD-KFLWASLLGGCRIHGNLDLAKRAAEALFEI- 458 (476)
Q Consensus 394 ~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 458 (476)
.+ ...++..|+..|...|++++|.++++++ +..+. ...++.+...|.+.+++.+|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 2467889999999999999999999886 11232 346788889999999999999999998773
Q ss_pred ---CCC---CchhHHHHHHhhhc
Q 038936 459 ---EPE---NPATYVTMANIYAS 475 (476)
Q Consensus 459 ---~p~---~~~~~~~l~~~y~~ 475 (476)
.|+ -..+|.+|+.+|..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~ 462 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRA 462 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHH
Confidence 344 45678889888864
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-10 Score=106.86 Aligned_cols=253 Identities=11% Similarity=0.077 Sum_probs=164.3
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccc
Q 038936 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD 224 (476)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 224 (476)
++-.+.. .|+.|+..||..++.-||..|+.+.|- +|..|.-...+.+...++.++.+....++.+.+. +|.
T Consensus 12 fla~~e~-~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 12 FLALHEI-SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred HHHHHHH-hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 3444554 788888888888888888888888888 8888887777788888888888888888777665 677
Q ss_pred hhhHHHHHHHHHhcCChhH---HHHHHHHHHH----cCCCCCHhhHHHHHH--------------HHhccccHHHHHHHH
Q 038936 225 VVSWTAMIGRYFQEGRREE---GFALFSELIK----SGIRPNAFTFAGVLN--------------ACADHAAEELGKQVH 283 (476)
Q Consensus 225 ~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~~~~~~~~~~l~~--------------~~~~~~~~~~a~~~~ 283 (476)
+.+|..|..+|...||... +.+.+..+.. .|+......+-..+. .....|.++.+.+++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887544 2222222221 222211111111111 122234444444444
Q ss_pred HHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH
Q 038936 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362 (476)
Q Consensus 284 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 362 (476)
..+....... +... .+=+.-.....+++-...-+...+ +++.++...+.+-...|+.+.|..++.+|.+.|++.+..
T Consensus 163 ~~~Pvsa~~~-p~~v-fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 163 AKVPVSAWNA-PFQV-FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred hhCCcccccc-hHHH-HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 3332221111 1111 011111222234444444444444 899999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 038936 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412 (476)
Q Consensus 363 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 412 (476)
-|..|+-+ .++..-+..+++-|.+. |+.|+.+|+...+..+.+.|.
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchh
Confidence 88888765 77777888888777766 999999998877666655443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.2e-09 Score=86.22 Aligned_cols=312 Identities=12% Similarity=0.082 Sum_probs=163.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHH---HHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHh
Q 038936 95 YNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI---SGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA 171 (476)
Q Consensus 95 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 171 (476)
..-+.+.+...|++..|+..|....+-|+..|.++. ..|...|+...|+.-+....+ .
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---l---------------- 101 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---L---------------- 101 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---c----------------
Confidence 344555666666666666666666666666555543 345555555555555555543 2
Q ss_pred hhhhhhHHHHHHHHHHcCCCchHHH-HHHHHHHHHcCCCHHHHHHHHHhhcccchh----------------h--HHHHH
Q 038936 172 IQCLRLGKEIHGYIMRTGFDSDEVV-WSALSDMYGKCGSINEARQIFDKMVDRDVV----------------S--WTAMI 232 (476)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------------~--~~~l~ 232 (476)
+||... ...-...+.+.|.+++|..-|+.+.+.++. . ....+
T Consensus 102 -------------------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql 162 (504)
T KOG0624|consen 102 -------------------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQL 162 (504)
T ss_pred -------------------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHH
Confidence 333211 112234455666666666666666443221 0 11123
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChh
Q 038936 233 GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312 (476)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 312 (476)
..+...|+...|+.....+++.. +.|...+..-..+|...|.+..|+.-++...+.. ..+...+..+...+...|+.+
T Consensus 163 ~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 163 KSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHH
Confidence 33444555555555555555542 3444444444555555555555555554444443 223333334444455555555
Q ss_pred hHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC
Q 038936 313 NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392 (476)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 392 (476)
.++...++..+-|+..-. +|..-+...+..+.++.| ......+++.++++..+...+.
T Consensus 241 ~sL~~iRECLKldpdHK~----Cf~~YKklkKv~K~les~----------------e~~ie~~~~t~cle~ge~vlk~-- 298 (504)
T KOG0624|consen 241 NSLKEIRECLKLDPDHKL----CFPFYKKLKKVVKSLESA----------------EQAIEEKHWTECLEAGEKVLKN-- 298 (504)
T ss_pred HHHHHHHHHHccCcchhh----HHHHHHHHHHHHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhc--
Confidence 554444444432221100 000000001111111111 1123456666666666666643
Q ss_pred CCCC-----hhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 038936 393 LTYT-----ADHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 393 ~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 465 (476)
.|+ ...+..+-.++...|++.+|++...++ ...|+ +.++.--..+|....+++.|+.-|+++.+.+|+|..+
T Consensus 299 -ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 299 -EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred -CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 333 223445556677778888888887774 55554 6677777888888888888888888888888887666
Q ss_pred HHHH
Q 038936 466 YVTM 469 (476)
Q Consensus 466 ~~~l 469 (476)
...+
T Consensus 378 reGl 381 (504)
T KOG0624|consen 378 REGL 381 (504)
T ss_pred HHHH
Confidence 5444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.5e-07 Score=81.88 Aligned_cols=421 Identities=10% Similarity=0.055 Sum_probs=268.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccc---cchHHHHHHHHHHhc
Q 038936 29 YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER---DVCSYNTMISGFTKG 105 (476)
Q Consensus 29 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 105 (476)
+..++. |-..+++...++..+...+. .+-...+.....-.+...|+-++|......-... +.+.|..+.-.+-..
T Consensus 11 F~~~lk-~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 11 FRRALK-CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHH-HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 344444 44667888888888888773 3445566665555666789999999988887664 457788888888889
Q ss_pred CCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHH
Q 038936 106 GSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182 (476)
Q Consensus 106 g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 182 (476)
.++++|++.|.....- |...|.-+.-.-.+.++++.....-.++.+ ..+.....|.....+..-.|+...|..++
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq--l~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ--LRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987643 555666666666778888888887777764 23334556778888888899999999999
Q ss_pred HHHHHcCC-CchHHHHHHH------HHHHHcCCCHHHHHHHHHhhccc--ch-hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038936 183 GYIMRTGF-DSDEVVWSAL------SDMYGKCGSINEARQIFDKMVDR--DV-VSWTAMIGRYFQEGRREEGFALFSELI 252 (476)
Q Consensus 183 ~~~~~~~~-~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 252 (476)
++..+... .|+...+... .....+.|..++|.+.+...... |- ..-.+-...+.+.++.++|..++..++
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 99887752 4554444322 23456678888888887665432 11 122344677889999999999999999
Q ss_pred HcCCCCCHhhHHHHHHHHh--ccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhH-HHHHccCC-CCChhh
Q 038936 253 KSGIRPNAFTFAGVLNACA--DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS-KKVFNGMP-RPDLVS 328 (476)
Q Consensus 253 ~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~-~~~~~~ 328 (476)
.. .||...|...+..+. -.+..+....+|....+. .|....-..+-.......++... ..++.... +.-+.+
T Consensus 247 ~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v 322 (700)
T KOG1156|consen 247 ER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV 322 (700)
T ss_pred hh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch
Confidence 86 477777666555443 233333333555554443 11111111111111111222222 22333322 222334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH----HcC----------CCCcH--HHHHHHHHHHhccCchhhHHHHHHHHHHhcC
Q 038936 329 WTSLIAGYAQNGMPDKALEYFELLL----KSG----------TQPDH--IVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392 (476)
Q Consensus 329 ~~~l~~~~~~~~~~~~A~~~~~~~~----~~~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 392 (476)
+..+...|-.-...+-..++.-.+. ..| -+|.. .++..++..+...|+++.|..+++.+.+
T Consensus 323 f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--- 399 (700)
T KOG1156|consen 323 FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--- 399 (700)
T ss_pred hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---
Confidence 4444444332221111111111111 111 13444 3556677888999999999999999985
Q ss_pred CCCC-hhhHHHHHHHHHhcCChhhHHHHHhhCC--CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 393 LTYT-ADHYACIVDLLARSGRFHEAEDVISKMP--MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 393 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
..|+ ++.|..-++++...|++++|...++++. ..||...-..-+.-..+.++.++|..+.....+.+-
T Consensus 400 HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 400 HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 3555 4566677899999999999999999973 345655444556666788999999988887766443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.29 E-value=6e-10 Score=95.12 Aligned_cols=253 Identities=13% Similarity=0.099 Sum_probs=170.7
Q ss_pred HHHHHcCCCHHHHHHHHHhhccc----chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccH
Q 038936 201 SDMYGKCGSINEARQIFDKMVDR----DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276 (476)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 276 (476)
++-+.-.|++..++.-.+ .... +......+.+++...|+++.++ .++.... .|.......+...+...++.
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344556788888886555 2221 1223445677888888876543 3333333 66666666666666554555
Q ss_pred HHHHHHHHHHHHhCCC-CchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038936 277 ELGKQVHGYMTRIGYD-PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355 (476)
Q Consensus 277 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 355 (476)
+.+..-++........ .+.........++...|++++|++++... .+.......+..|++.++++.|.+.++.|.+.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6665555554433323 23333334446678889999999888876 56677777889999999999999999999874
Q ss_pred CCCCcHHHHHHHHHHHhc--c--CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cH
Q 038936 356 GTQPDHIVFVGVLTACTH--A--GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DK 429 (476)
Q Consensus 356 ~~~~~~~~~~~l~~~~~~--~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 429 (476)
..| .+...++.++.. . +.+.+|..+|+++.+ ..++++.+.+.++.+....|++++|.++++++ ...| ++
T Consensus 161 --~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 161 --DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp --SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred --CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 334 445556665533 3 368999999999886 45678888999999999999999999999985 4444 56
Q ss_pred HHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCchh
Q 038936 430 FLWASLLGGCRIHGNL-DLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 430 ~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~ 465 (476)
.++..++-+....|+. +.+.+.+.++...+|+++..
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 6777788777778887 67888999999999988643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.4e-08 Score=79.71 Aligned_cols=186 Identities=13% Similarity=0.042 Sum_probs=143.0
Q ss_pred hhhhhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCCh
Q 038936 2 IDILCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC-LLDMYAKCGNI 77 (476)
Q Consensus 2 i~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~ 77 (476)
|.-+.+..++++|++++..-. +.+....+.+..+|-+..++..|-.+|+++-.. .|...-|.. -.+.+.+.+.+
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhccc
Confidence 455788899999999998775 447788888999999999999999999999874 455555543 23555688999
Q ss_pred HHHHHHHHHcccc-cchHHHHHHH--HHHhcCCHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038936 78 SDAQTLFDEMQER-DVCSYNTMIS--GFTKGGSLEQARNLFDEMPQ-RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFE 153 (476)
Q Consensus 78 ~~A~~~~~~~~~~-~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 153 (476)
.+|+++...|... +...-..-+. .....+|+..+..+++.... .+..+.+.......+.|+++.|.+-|+...+.+
T Consensus 95 ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 95 ADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 9999999998863 3222222222 23468999999999999984 667777777777889999999999999999867
Q ss_pred CCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCC
Q 038936 154 NSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD 191 (476)
Q Consensus 154 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 191 (476)
|..|- ..|+..+ +..+.++++.|.+...+++++|++
T Consensus 175 Gyqpl-lAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 175 GYQPL-LAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred CCCch-hHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 76664 3455444 445678999999999999988864
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-11 Score=74.01 Aligned_cols=50 Identities=28% Similarity=0.440 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038936 24 PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK 73 (476)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 73 (476)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-07 Score=87.82 Aligned_cols=249 Identities=12% Similarity=0.147 Sum_probs=153.5
Q ss_pred hhhhhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-C-------C-CCChhhHHHHHHHHHh
Q 038936 3 DILCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSS-G-------F-KPGVFISNCLLDMYAK 73 (476)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~-~~~~~~~~~l~~~~~~ 73 (476)
+.|.--|+.+.|.+-++.+. +..+|..+.+.|.+.++++-|.-++-.|... | . .|+ .+-....-....
T Consensus 736 SfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 34566788888887777664 5678999999999999988887777766532 1 1 122 332333344457
Q ss_pred cCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038936 74 CGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR-DNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152 (476)
Q Consensus 74 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 152 (476)
.|.+++|+.+|.+.++ |..|-+.|-..|.+++|.++-+.-..- --.||......+-..++.+.|++.|++...
T Consensus 813 LgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~- 886 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGV- 886 (1416)
T ss_pred HhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCC-
Confidence 8999999999998654 555667777889999999887654321 234677777777778889999998886542
Q ss_pred cCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHH
Q 038936 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMI 232 (476)
Q Consensus 153 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 232 (476)
|-...+..+. .++...+.+.+. ..|...|.--....-..|+.+.|+.+|....+ |..++
T Consensus 887 ----hafev~rmL~------e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----~fs~V 945 (1416)
T KOG3617|consen 887 ----HAFEVFRMLK------EYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----YFSMV 945 (1416)
T ss_pred ----hHHHHHHHHH------hChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----hhhhe
Confidence 1111111110 111111222221 12334555555666667778877777765532 55556
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHH
Q 038936 233 GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287 (476)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 287 (476)
+..|-.|+.++|-++-++ .-|......+.+.|...|++.+|..+|-+..
T Consensus 946 rI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 666666666666655433 2244455556666666666666666665543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.9e-07 Score=84.39 Aligned_cols=191 Identities=13% Similarity=0.170 Sum_probs=122.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCCh
Q 038936 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311 (476)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (476)
+.+.....+|.+|+.+++.+.... .-..-|..+...|...|+++.|.++|-+.- .++-.+.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 344556677777777777776543 223345666777888888888887775432 334567778888888
Q ss_pred hhHHHHHccCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 312 ENSKKVFNGMPRPDL--VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 312 ~~a~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
+.|.++-.+...|.. ..|-.-..-+-++|++.+|.+++-... .|+. .+..|-+.|..+..+++..+-..
T Consensus 808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 888888777776543 345444555777788887777764332 2443 34567777777777666543321
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHH
Q 038936 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAA 452 (476)
Q Consensus 390 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 452 (476)
..-..+...++.-|...|++..|...|-+++ -|.+....|...+-|++|.++.
T Consensus 879 ----d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 879 ----DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred ----hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHH
Confidence 2234556677888888888888888887764 2445555566666666665543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.4e-07 Score=84.92 Aligned_cols=401 Identities=12% Similarity=0.127 Sum_probs=247.6
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH-HHH---HHHHc------cccc--------------
Q 038936 36 CRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD-AQT---LFDEM------QERD-------------- 91 (476)
Q Consensus 36 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~---~~~~~------~~~~-------------- 91 (476)
.-++++..--..+++..+..|.. |..++++|...|...++-.+ -++ .|+.. .++|
T Consensus 848 vEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD 926 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCD 926 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCc
Confidence 34566777778888888899876 99999999999987754332 111 11111 1111
Q ss_pred ---------chHHHHHHHHHHhcCCHHHHHHHHhc-----------CC------CCCcchHHHHHHHHHhcCChhHHHHH
Q 038936 92 ---------VCSYNTMISGFTKGGSLEQARNLFDE-----------MP------QRDNFSWTAMISGYVRYNQPIEALDL 145 (476)
Q Consensus 92 ---------~~~~~~l~~~~~~~g~~~~a~~~~~~-----------~~------~~~~~~~~~l~~~~~~~~~~~~a~~~ 145 (476)
...|....+.+.+..|.+-=.+++.+ .. ..|+......+.++...+-+.+-+++
T Consensus 927 ~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 927 LELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred HHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHH
Confidence 12344445555555554433333321 11 13667777788899999999999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc---
Q 038936 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD--- 222 (476)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 222 (476)
++++.-...........-.++-.-+-.-+...+.++.+++..... |+ +.......+-+++|..+|+....
T Consensus 1007 LEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~~n~~ 1079 (1666)
T KOG0985|consen 1007 LEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKFDMNVS 1079 (1666)
T ss_pred HHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHhcccHH
Confidence 998875232222222222222222223344444555544443321 11 12222233333444444433210
Q ss_pred ----------------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHH
Q 038936 223 ----------------------RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280 (476)
Q Consensus 223 ----------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 280 (476)
..+..|..+..+-.+.|...+|++-|-+. .|+..|.-++..+.+.|.+++-.
T Consensus 1080 A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv 1153 (1666)
T KOG0985|consen 1080 AIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLV 1153 (1666)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHH
Confidence 13457888888888889888888776542 46678888999999999999999
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 038936 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360 (476)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 360 (476)
.++...++....|... +.|+-+|++.++..+.++++. -||......+..-|...|.++.|.-+|..
T Consensus 1154 ~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------- 1219 (1666)
T KOG0985|consen 1154 KYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------- 1219 (1666)
T ss_pred HHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------
Confidence 9888887776566544 568888999888887776643 46766677777777777777777666643
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCC--CcHHHHHHHHHH
Q 038936 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMK--PDKFLWASLLGG 438 (476)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~l~~~ 438 (476)
..-|..|...+...|+++.|...-+++ .+..+|.....+|...+.+.-|. -.+.. -...-...++.-
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQ----iCGL~iivhadeLeeli~~ 1288 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQ----ICGLNIIVHADELEELIEY 1288 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHH----hcCceEEEehHhHHHHHHH
Confidence 234555666667777777776654333 24556776666666555543332 11211 234455667777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
|...|-+++-+.+++..+.++..+-..+..|+-+|+.
T Consensus 1289 Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1289 YQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 7788888888888888888887777778788777763
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.4e-09 Score=81.09 Aligned_cols=192 Identities=14% Similarity=0.091 Sum_probs=109.3
Q ss_pred HhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHH
Q 038936 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKAL 346 (476)
Q Consensus 270 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 346 (476)
|...|+...|..-+++.++.. |.+..++..+...|.+.|+.+.|.+.|++..+ .+-.+.|....-+|..|++++|.
T Consensus 45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHH
Confidence 334444444444444444432 33333444444444444444444444444432 23345556666666777777777
Q ss_pred HHHHHHHHcCCC-CcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC--
Q 038936 347 EYFELLLKSGTQ-PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-- 423 (476)
Q Consensus 347 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 423 (476)
..|++....-.- -...+|..+.-+..+.|+.+.|.+.|++..+. .+..+.....+.....+.|++..|...++..
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 777776654211 12346666666667777777777777777753 2333445666677777777777777777765
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 038936 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 424 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 464 (476)
...++.....-.+..-...||.+.+-+.=.++.+..|..+.
T Consensus 202 ~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 202 RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 23355555555555556667777777777777777776543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.2e-07 Score=75.15 Aligned_cols=304 Identities=14% Similarity=0.077 Sum_probs=170.9
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHH---HHHHHhcCCHHHHHHHHhcCCCCCcchHHHHH---HH
Q 038936 59 PGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTM---ISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI---SG 132 (476)
Q Consensus 59 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~ 132 (476)
.++.-..-+...+...|++.+|+.-|....+-|+..|.++ ...|...|+-..|+.=+.++.+.-+..+.+-+ ..
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 3445555667777788888888888888888766665554 44577778777777777777654444444433 56
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCCC-chH------------HHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHH
Q 038936 133 YVRYNQPIEALDLYRMMQNFENSVSN-KFT------------LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSA 199 (476)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 199 (476)
+.+.|.++.|..-|+...+..+..-. ... ....+..+...|+...+.+....+++.. +.+...+..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 77889999998888888763221111 011 1112223334445555555555555432 445555555
Q ss_pred HHHHHHcCCCHHHHHHHHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccH
Q 038936 200 LSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276 (476)
Q Consensus 200 l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 276 (476)
-..+|...|++..|+.-++...+ .+...+..+-..+...|+.+.++...++.++. .||....-..-. ..
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK------kl 266 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK------KL 266 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH------HH
Confidence 55555555655555555544422 23333444444455555555555555555543 344332211110 11
Q ss_pred HHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CC--h---hhHHHHHHHHHhcCChHHHHHHH
Q 038936 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PD--L---VSWTSLIAGYAQNGMPDKALEYF 349 (476)
Q Consensus 277 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~--~---~~~~~l~~~~~~~~~~~~A~~~~ 349 (476)
....+.+..| ......++|.++.+..+...+ |. . ..+..+-.++...+++.+|+...
T Consensus 267 kKv~K~les~----------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 267 KKVVKSLESA----------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred HHHHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 1111111111 112344556666655555553 22 1 12334455666777888888888
Q ss_pred HHHHHcCCCCc-HHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 350 ELLLKSGTQPD-HIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 350 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
.+.++ +.|+ ..++.--..+|.-...++.|+.-|+.+.+
T Consensus 331 ~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 331 KEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 88877 3454 66777777778777888888888887775
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.9e-08 Score=90.09 Aligned_cols=173 Identities=13% Similarity=0.050 Sum_probs=117.1
Q ss_pred CHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038936 10 RLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86 (476)
Q Consensus 10 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 86 (476)
+...|+..|=+.. +.-...|..|...|+...+...|.++|...-+.+- .+..........|++..+++.|..+.-.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 3555666655543 33445788888888887888899999998887652 3677788888999999999999888554
Q ss_pred ccccc-----chHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCC
Q 038936 87 MQERD-----VCSYNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158 (476)
Q Consensus 87 ~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 158 (476)
..+.+ ...|....-.|...++...|...|+...+. |...|..+..+|.+.|++..|+++|.+... ..|+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~---LrP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL---LRPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh---cCcH
Confidence 44322 233444556677778888888888777653 555677788888888888888888877754 3443
Q ss_pred chH-HHHHHHHHHhhhhhhhHHHHHHHHH
Q 038936 159 KFT-LSSVLSAVSAIQCLRLGKEIHGYIM 186 (476)
Q Consensus 159 ~~~-~~~ll~~~~~~~~~~~a~~~~~~~~ 186 (476)
... -.......+..|.+.++...+...+
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 321 1122223356677777776666554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.9e-09 Score=80.64 Aligned_cols=188 Identities=12% Similarity=0.069 Sum_probs=108.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcC
Q 038936 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309 (476)
Q Consensus 230 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 309 (476)
.|.-+|...|+...|..-+++.++.. +.+..++..+...|.+.|+.+.|.+.|+...... +.+..+.|....-+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 34445555555555555555555543 2333445555555555555555555555555543 444455555555666666
Q ss_pred ChhhHHHHHccCCC-C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHH
Q 038936 310 NVENSKKVFNGMPR-P----DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384 (476)
Q Consensus 310 ~~~~a~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 384 (476)
++++|...|+.... | -..+|..++-+..+.|+++.|.+.|++.++.. +....+...+.....+.|++-.|..++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHH
Confidence 66666666665553 2 23466666666667777777777777776653 223345555666666777777777777
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
+..... ..++....-..+++-.+.|+-+.+-+.=..
T Consensus 197 ~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 197 ERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred HHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 666653 235665565556666666666665554433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.5e-08 Score=85.07 Aligned_cols=115 Identities=10% Similarity=0.018 Sum_probs=51.5
Q ss_pred ChhHHHHHHHHHHhccCCCCCc--hHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHH
Q 038936 138 QPIEALDLYRMMQNFENSVSNK--FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQ 215 (476)
Q Consensus 138 ~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 215 (476)
..+.++.-+.++.......|+. ..|..+...+...|+.+.|...++..++.. |.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4444555555554322222221 223333333444444444444444444332 3334455555555555555555555
Q ss_pred HHHhhcc--c-chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038936 216 IFDKMVD--R-DVVSWTAMIGRYFQEGRREEGFALFSELIK 253 (476)
Q Consensus 216 ~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 253 (476)
.|+...+ | +..+|..+..++...|++++|...|++..+
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555533 1 123344444455555555555555555544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.1e-06 Score=78.02 Aligned_cols=162 Identities=16% Similarity=0.146 Sum_probs=121.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc-ccchHHHHHHHHHHhcCCHHHHH
Q 038936 34 QFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE-RDVCSYNTMISGFTKGGSLEQAR 112 (476)
Q Consensus 34 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~ 112 (476)
......|-+++|..+|.+.++. -.|-..|-..|.+++|.++.+.--+ .=..+|.....-+-..+|.+.|+
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHH
Confidence 3345778899999999988773 3455667788999999998876333 22356777777777888999999
Q ss_pred HHHhcCCC-----------------------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 038936 113 NLFDEMPQ-----------------------RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAV 169 (476)
Q Consensus 113 ~~~~~~~~-----------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 169 (476)
+.|++... +|...|.-....+-..|+.+.|+.+|...+. |..+++..
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~ 948 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIK 948 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeE
Confidence 98887642 2445555556666678999999999988876 67777778
Q ss_pred HhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhh
Q 038936 170 SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220 (476)
Q Consensus 170 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 220 (476)
|-.|+.++|-++-++ ..|...+-.+.+.|-..|++.+|..+|.+.
T Consensus 949 C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred eeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 888888888877654 235556667888888888888888888766
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-06 Score=88.44 Aligned_cols=363 Identities=10% Similarity=-0.004 Sum_probs=218.5
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCcch--HHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhh
Q 038936 98 MISGFTKGGSLEQARNLFDEMPQRDNFS--WTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL 175 (476)
Q Consensus 98 l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 175 (476)
....+...|++.+|..........+... ...........|++..+..++..+.. .....+..........+...|++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~-~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPW-EVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCH-HHHhcCcchHHHHHHHHHHCCCH
Confidence 3444666777777776666554432111 11122334456777777777666532 11112222223334444567788
Q ss_pred hhHHHHHHHHHHcCC------Cch--HHHHHHHHHHHHcCCCHHHHHHHHHhhcc--c--ch----hhHHHHHHHHHhcC
Q 038936 176 RLGKEIHGYIMRTGF------DSD--EVVWSALSDMYGKCGSINEARQIFDKMVD--R--DV----VSWTAMIGRYFQEG 239 (476)
Q Consensus 176 ~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~--~~----~~~~~l~~~~~~~~ 239 (476)
+.+...+......-- .+. ......+...+...|++++|...+++... + +. ...+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 888887776654210 111 12223344566678999999998888643 1 11 23455666777889
Q ss_pred ChhHHHHHHHHHHHcCC---CCC--HhhHHHHHHHHhccccHHHHHHHHHHHHHh----CCC--C-chhhHHHHHHHhhh
Q 038936 240 RREEGFALFSELIKSGI---RPN--AFTFAGVLNACADHAAEELGKQVHGYMTRI----GYD--P-YSFAASALVHMYSK 307 (476)
Q Consensus 240 ~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~ 307 (476)
++++|...+.+.....- .+. ..+...+...+...|+++.|...+++.... +.. + ....+..+...+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 99999998888764311 111 123444555677889999999888876553 211 1 12334455666777
Q ss_pred cCChhhHHHHHccCCC------C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHH-----HHHHHHHhc
Q 038936 308 CGNVENSKKVFNGMPR------P--DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP-DHIVF-----VGVLTACTH 373 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~ 373 (476)
.|++++|...+++... + ....+..+...+...|++++|...+++........ ....+ ...+..+..
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 8999999888877642 1 12334446667888999999999988875531111 11111 111233455
Q ss_pred cCchhhHHHHHHHHHHhcCCCCChh----hHHHHHHHHHhcCChhhHHHHHhhC-------CCCCc-HHHHHHHHHHHHh
Q 038936 374 AGLVDKGLQYFHSIKEKHGLTYTAD----HYACIVDLLARSGRFHEAEDVISKM-------PMKPD-KFLWASLLGGCRI 441 (476)
Q Consensus 374 ~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~ 441 (476)
.|+.+.|.+++...... ...... .+..++.++...|+.++|...++++ +..++ ..+...+..++..
T Consensus 666 ~g~~~~A~~~l~~~~~~--~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~ 743 (903)
T PRK04841 666 TGDKEAAANWLRQAPKP--EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ 743 (903)
T ss_pred CCCHHHHHHHHHhcCCC--CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 78888988887665431 111111 1346778889999999999998875 11222 2356667777889
Q ss_pred cCChHHHHHHHHHHHHcCCCCc
Q 038936 442 HGNLDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 442 ~g~~~~A~~~~~~~~~~~p~~~ 463 (476)
.|+.++|...+.+++++.....
T Consensus 744 ~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 744 QGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred cCCHHHHHHHHHHHHHHhCccc
Confidence 9999999999999999765443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.4e-07 Score=81.51 Aligned_cols=193 Identities=13% Similarity=0.075 Sum_probs=112.1
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--C---Ch--hhHHHHHHHHH
Q 038936 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--P---DL--VSWTSLIAGYA 337 (476)
Q Consensus 265 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~--~~~~~l~~~~~ 337 (476)
.+...+...|+++.|...++...+.. +.+...+..+..++...|++++|...+++..+ | +. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445666777777777777777664 44455666677777777777777777776654 1 11 23445777788
Q ss_pred hcCChHHHHHHHHHHHHcCC-CCcHHHH-H--HHHHHHhccCchhhHHHHHHHHHHhc-CCCC---ChhhHHHHHHHHHh
Q 038936 338 QNGMPDKALEYFELLLKSGT-QPDHIVF-V--GVLTACTHAGLVDKGLQYFHSIKEKH-GLTY---TADHYACIVDLLAR 409 (476)
Q Consensus 338 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~ 409 (476)
..|++++|+.++++...... .+..... . .++..+...|..+.+.++ +.+.... ...+ ........+.++..
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 88888888888888764322 1111111 1 223333444544333332 2222110 1101 11222346667788
Q ss_pred cCChhhHHHHHhhCC----C---CC----cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 410 SGRFHEAEDVISKMP----M---KP----DKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 410 ~g~~~~A~~~~~~~~----~---~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
.|+.++|.+.++.+. . .. .+........++...|++++|.+.+..++.+.
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 889999998887762 1 11 11122233344667899999999999998754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.8e-09 Score=80.63 Aligned_cols=123 Identities=10% Similarity=0.028 Sum_probs=102.6
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-C
Q 038936 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-P 424 (476)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 424 (476)
..++++.++ +.|+. +..+...+...|++++|...|+.+... -+.+...+..++.++.+.|++++|+..|+++ .
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 356666666 34554 445677888999999999999999863 4557888999999999999999999999996 4
Q ss_pred CCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 425 MKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 425 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
..| +...+..++.++...|++++|+..|++++++.|+++..+.+.+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 445 67788999999999999999999999999999999999998887653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.4e-07 Score=74.70 Aligned_cols=285 Identities=12% Similarity=0.084 Sum_probs=146.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHcccc---cchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCc--chHH-HHHHHHH
Q 038936 61 VFISNCLLDMYAKCGNISDAQTLFDEMQER---DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN--FSWT-AMISGYV 134 (476)
Q Consensus 61 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~-~l~~~~~ 134 (476)
..-+.+.+..+++..++.+|++++..-.+. +....+.|..+|.+..++..|-..++.+...-+ .-|. --...+.
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 334556666667777777777777665543 334556666677777777777777776654321 1221 1234555
Q ss_pred hcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHH
Q 038936 135 RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR 214 (476)
Q Consensus 135 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 214 (476)
+.+.+..|+++...|... |+...-..-+.+ ......+++..+.
T Consensus 90 ~A~i~ADALrV~~~~~D~----~~L~~~~lqLqa---------------------------------AIkYse~Dl~g~r 132 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN----PALHSRVLQLQA---------------------------------AIKYSEGDLPGSR 132 (459)
T ss_pred HhcccHHHHHHHHHhcCC----HHHHHHHHHHHH---------------------------------HHhcccccCcchH
Confidence 667777777776666530 111111111111 1112334444444
Q ss_pred HHHHhhcc-cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCC
Q 038936 215 QIFDKMVD-RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP 293 (476)
Q Consensus 215 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 293 (476)
.++++... .+..+.+.......+.|+++.|.+-|+...+.+--.....|+..+. ..+.++.+.|.+...+++++|++.
T Consensus 133 sLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 133 SLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred HHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhc
Confidence 44444442 2333333333333444555555555554444322222233333322 223444555555555554443321
Q ss_pred ch----------------------------hhHHHHHHHhhhcCChhhHHHHHccCCC-----CChhhHHHHHHHHHhcC
Q 038936 294 YS----------------------------FAASALVHMYSKCGNVENSKKVFNGMPR-----PDLVSWTSLIAGYAQNG 340 (476)
Q Consensus 294 ~~----------------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~ 340 (476)
.+ ..+|.-...+.+.|+++.|.+.+-.|.. .|+++...+.-.= ..+
T Consensus 212 HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~ 290 (459)
T KOG4340|consen 212 HPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDA 290 (459)
T ss_pred CCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccC
Confidence 11 1223333445677888888888888873 4666655543221 234
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHH
Q 038936 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFH 385 (476)
Q Consensus 341 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 385 (476)
++.+..+-+.-++..+. -...||..++-.|++..-++-|-.++.
T Consensus 291 ~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 291 RPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred CccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 45555555555555543 345677777778888877777776653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.4e-09 Score=88.87 Aligned_cols=227 Identities=13% Similarity=0.056 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHhhHHHHHHHHhcc
Q 038936 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP-NAFTFAGVLNACADH 273 (476)
Q Consensus 195 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 273 (476)
.....+.+++...|+++.++.-+..-..|.......+...+...++-+.+..-+.+....+..+ +..........+...
T Consensus 36 e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~ 115 (290)
T PF04733_consen 36 ERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHE 115 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHc
Confidence 3444556677777777665554444344444444444433333234444444444433333222 222222223345667
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCC-hhhHHHHHHHHH----hcCChHHHHHH
Q 038936 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD-LVSWTSLIAGYA----QNGMPDKALEY 348 (476)
Q Consensus 274 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~----~~~~~~~A~~~ 348 (476)
|+++.|.+++... .+.......+.+|.+.++++.|.+.++.|.+.+ -.+...+..++. -.+.+.+|..+
T Consensus 116 ~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~ 189 (290)
T PF04733_consen 116 GDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYI 189 (290)
T ss_dssp CHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred CCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 8888887776532 344555667788888888888888888887632 223333444432 33468999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh-hhHHHHHhhCC-CC
Q 038936 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF-HEAEDVISKMP-MK 426 (476)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~-~~ 426 (476)
|+++.+. ..+++.+.+.++.++...|++++|.+.+.++... .+-++.+...++.+....|+. +.+.+.+.++. ..
T Consensus 190 f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 190 FEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 9998765 5678888898999999999999999999988753 355677778888888888887 56777888873 44
Q ss_pred CcHH
Q 038936 427 PDKF 430 (476)
Q Consensus 427 p~~~ 430 (476)
|+.+
T Consensus 267 p~h~ 270 (290)
T PF04733_consen 267 PNHP 270 (290)
T ss_dssp TTSH
T ss_pred CCCh
Confidence 5433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.4e-07 Score=80.28 Aligned_cols=252 Identities=9% Similarity=-0.023 Sum_probs=132.2
Q ss_pred HhhhhhhhHHHHHHHHHHcCCCchHHHHHH---HHHHHHcCCCHHHHHHHHHhhcccch---hhHHHHHHHHHhcCChhH
Q 038936 170 SAIQCLRLGKEIHGYIMRTGFDSDEVVWSA---LSDMYGKCGSINEARQIFDKMVDRDV---VSWTAMIGRYFQEGRREE 243 (476)
Q Consensus 170 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~ 243 (476)
...|+++.+.+.++...+.. |.+...+.. ........+..+.+.+.++.....++ .....+...+...|++++
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 44555566666555555442 333333321 11111223444445554443222222 223344456677777777
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCC-Cch--hhHHHHHHHhhhcCChhhHHHHHcc
Q 038936 244 GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD-PYS--FAASALVHMYSKCGNVENSKKVFNG 320 (476)
Q Consensus 244 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~ 320 (476)
|...+++..+.. +.+...+..+...+...|++++|...++...+.... ++. ..+..+...+...|++++|..++++
T Consensus 133 A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 133 AEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777654 334455566666677777777777777776654311 221 2344566777778888888888877
Q ss_pred CCCCCh--hhHH------HHHHHHHhcCChHHHHHH--HHHHHHcCCC--CcHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 038936 321 MPRPDL--VSWT------SLIAGYAQNGMPDKALEY--FELLLKSGTQ--PDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 321 ~~~~~~--~~~~------~l~~~~~~~~~~~~A~~~--~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 388 (476)
...+.+ .... .++.-+...|....+... +......... .....-.....++...|+.++|...++.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~ 291 (355)
T cd05804 212 HIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALK 291 (355)
T ss_pred HhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 653211 1111 122223334433322222 1111111101 111222245667788899999999998876
Q ss_pred HhcCC-------CCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 389 EKHGL-------TYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 389 ~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
....- ............++...|+.++|.+.+...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~a 333 (355)
T cd05804 292 GRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPV 333 (355)
T ss_pred HHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 53111 011222334455677999999999988775
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.9e-09 Score=92.42 Aligned_cols=226 Identities=15% Similarity=0.083 Sum_probs=165.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCCh
Q 038936 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311 (476)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (476)
..-+.+.|+..+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+.. +.+....-.|...|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 344567888888888888887765 4566777777777777888888888888888775 55677777788888888888
Q ss_pred hhHHHHHccCCCCChh-hHHHHH---------HHHHhcCChHHHHHHHHHH-HHcCCCCcHHHHHHHHHHHhccCchhhH
Q 038936 312 ENSKKVFNGMPRPDLV-SWTSLI---------AGYAQNGMPDKALEYFELL-LKSGTQPDHIVFVGVLTACTHAGLVDKG 380 (476)
Q Consensus 312 ~~a~~~~~~~~~~~~~-~~~~l~---------~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a 380 (476)
..|.+.++...+..+. .|.... ..+..........++|-++ ...+..+|+.....|.-.|-..|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 8888887766421100 000000 1111112233344445444 3444457778888888888899999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038936 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPDK-FLWASLLGGCRIHGNLDLAKRAAEALFEI 458 (476)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 458 (476)
+.+|+.++.. -|-|..+|+.|+-.++...+.++|+..+.++ .++|.. .++..++-+|...|.+++|...|-.++.+
T Consensus 450 iDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999999963 3557788999999999999999999999996 778864 47788888999999999999999999987
Q ss_pred CCC
Q 038936 459 EPE 461 (476)
Q Consensus 459 ~p~ 461 (476)
.+.
T Consensus 528 q~k 530 (579)
T KOG1125|consen 528 QRK 530 (579)
T ss_pred hhc
Confidence 655
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-05 Score=74.79 Aligned_cols=440 Identities=13% Similarity=0.126 Sum_probs=239.7
Q ss_pred hhhhhcCCHHHHHHHHHhcC--CCCHHHHHH----HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038936 3 DILCNQRRLKEALQILHQIS--HPSPSIYSS----LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76 (476)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 76 (476)
+.|.++|-+.+|++.+..+. ......-+. -+..+.-.-.++.+.+++..|...++..+..+...+..-|...=-
T Consensus 614 qLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg 693 (1666)
T KOG0985|consen 614 QLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLG 693 (1666)
T ss_pred HHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 34668888899998887764 111111110 122344455788999999999999888888888888877877766
Q ss_pred hHHHHHHHHHccc---------------ccchHHHHHHHHHHhcCCHHHHHHHHhcCCC---------------C-----
Q 038936 77 ISDAQTLFDEMQE---------------RDVCSYNTMISGFTKGGSLEQARNLFDEMPQ---------------R----- 121 (476)
Q Consensus 77 ~~~A~~~~~~~~~---------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------~----- 121 (476)
.+..+++|+.... .|+...-..|.+.++.|++.+..++.++-.- +
T Consensus 694 ~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPL 773 (1666)
T KOG0985|consen 694 AQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPL 773 (1666)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCce
Confidence 7788888887763 4677777889999999999988887765421 1
Q ss_pred ----Ccch-HHH------------HHHHHHhcCChhHHHHHHHHHHhccCCCCCchH-------------HHHHHHHHHh
Q 038936 122 ----DNFS-WTA------------MISGYVRYNQPIEALDLYRMMQNFENSVSNKFT-------------LSSVLSAVSA 171 (476)
Q Consensus 122 ----~~~~-~~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~~ll~~~~~ 171 (476)
|..- -+. .|..|.+.=++.+.-.+...+.. +.-+... ..-+..-+.+
T Consensus 774 iiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD---~dC~E~~ik~Li~~v~gq~~~deLv~EvEk 850 (1666)
T KOG0985|consen 774 IIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLD---VDCSEDFIKNLILSVRGQFPVDELVEEVEK 850 (1666)
T ss_pred EEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhc---CCCcHHHHHHHHHHHhccCChHHHHHHHHh
Confidence 1111 111 12233322222222222222111 0001111 1122233445
Q ss_pred hhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHH----HHHHhh------cccch----------------
Q 038936 172 IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEAR----QIFDKM------VDRDV---------------- 225 (476)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~----~~~~~~------~~~~~---------------- 225 (476)
.++...-...++..++.| ..+..++++|...|...++-.+-. ..++.. .++|+
T Consensus 851 RNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~el 929 (1666)
T KOG0985|consen 851 RNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLEL 929 (1666)
T ss_pred hhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHH
Confidence 566666667777777777 457778888888877665432211 000000 11111
Q ss_pred -------hhHHHHHHHHHhcCChhHHH-----------HHHHHHHHcCC--CCCHhhHHHHHHHHhccccHHHHHHHHHH
Q 038936 226 -------VSWTAMIGRYFQEGRREEGF-----------ALFSELIKSGI--RPNAFTFAGVLNACADHAAEELGKQVHGY 285 (476)
Q Consensus 226 -------~~~~~l~~~~~~~~~~~~a~-----------~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 285 (476)
..|....+-+.+..+.+-=. .+.++..+.++ ..|+...+.-+.++...+-+.+-++++++
T Consensus 930 I~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEK 1009 (1666)
T KOG0985|consen 930 INVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEK 1009 (1666)
T ss_pred HHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 01111222222222221111 12222222221 12333334444455555555555555544
Q ss_pred HHHhCC--CCchhhHHH---------------------------HHHHhhhcCChhhHHHHHccCCC-------------
Q 038936 286 MTRIGY--DPYSFAASA---------------------------LVHMYSKCGNVENSKKVFNGMPR------------- 323 (476)
Q Consensus 286 ~~~~~~--~~~~~~~~~---------------------------l~~~~~~~~~~~~a~~~~~~~~~------------- 323 (476)
+.-.+. .-+...-+. +.......+-+++|..+|++..-
T Consensus 1010 IvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~ 1089 (1666)
T KOG0985|consen 1010 IVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIG 1089 (1666)
T ss_pred HhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhh
Confidence 432110 000001111 11222333445566665554320
Q ss_pred ------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhc
Q 038936 324 ------------PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391 (476)
Q Consensus 324 ------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 391 (476)
..+..|..+..+-.+.|...+|++-|-+. -|+..|..++....+.|.+++-..++..+..+
T Consensus 1090 ~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk- 1162 (1666)
T KOG0985|consen 1090 SLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK- 1162 (1666)
T ss_pred hHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-
Confidence 34567888999999999998888877432 35667888999999999999999988777765
Q ss_pred CCCCChhhHHHHHHHHHhcCChhhHHHHHhhC--------C--------------CCCcHHHHHHHHHHHHhcCChHHHH
Q 038936 392 GLTYTADHYACIVDLLARSGRFHEAEDVISKM--------P--------------MKPDKFLWASLLGGCRIHGNLDLAK 449 (476)
Q Consensus 392 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~--------------~~p~~~~~~~l~~~~~~~g~~~~A~ 449 (476)
.-.|.. -..|+-+|++.+++.+-.+++.-- + .-.++..|..+...+...|++..|.
T Consensus 1163 ~~E~~i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1163 VREPYI--DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred hcCccc--hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 445544 456888899999888877665321 0 0123344555555555666666665
Q ss_pred HHHHHH
Q 038936 450 RAAEAL 455 (476)
Q Consensus 450 ~~~~~~ 455 (476)
...+++
T Consensus 1241 D~aRKA 1246 (1666)
T KOG0985|consen 1241 DAARKA 1246 (1666)
T ss_pred HHhhhc
Confidence 554443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.4e-09 Score=92.20 Aligned_cols=202 Identities=14% Similarity=0.138 Sum_probs=162.0
Q ss_pred HhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHH
Q 038936 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKAL 346 (476)
Q Consensus 270 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 346 (476)
+.+.|++..|.-.|+..++.+ |.+...|..|.......++-..|+..++++.+ .|......|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 457888999999999988886 77788999999999999999999999998886 34567777888899999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHH--------HHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH
Q 038936 347 EYFELLLKSGTQPDHIVFVG--------VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418 (476)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~--------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 418 (476)
..++.-+...++ ...... .-..+..........+.|-++....+..+|+++...|+..|.-.|++++|++
T Consensus 374 ~~L~~Wi~~~p~--y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPK--YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCcc--chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999998765311 100000 0012223334455666777777665666888999999999999999999999
Q ss_pred HHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 419 VISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 419 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
.|+.+ ..+| |..+|+.|+.++....+.++|+..|.+++++.|.-..++++||..|.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCM 509 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhh
Confidence 99996 6677 67799999999999999999999999999999999999999987764
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-07 Score=76.80 Aligned_cols=156 Identities=10% Similarity=0.144 Sum_probs=116.7
Q ss_pred HHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHH
Q 038936 303 HMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382 (476)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 382 (476)
-.|...|+++.+..-.+.+..|. ..+...++.++++..++..++.+ +.|...|..+...|...|++++|..
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~ 94 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALL 94 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45667777666544433222221 01223566788888888888764 4577788889999999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHH-HhcCC--hhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 383 YFHSIKEKHGLTYTADHYACIVDLL-ARSGR--FHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
.|+++... .+.+...+..++.++ ...|+ .++|.++++++ ...| +...+..++..+...|++++|+..|+++++
T Consensus 95 a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 95 AYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999864 355777888888864 67777 59999999996 4555 667888889999999999999999999999
Q ss_pred cCCCCchhHHHH
Q 038936 458 IEPENPATYVTM 469 (476)
Q Consensus 458 ~~p~~~~~~~~l 469 (476)
+.|++..-+..+
T Consensus 173 l~~~~~~r~~~i 184 (198)
T PRK10370 173 LNSPRVNRTQLV 184 (198)
T ss_pred hCCCCccHHHHH
Confidence 998877665444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=9e-07 Score=83.90 Aligned_cols=176 Identities=15% Similarity=0.095 Sum_probs=113.7
Q ss_pred hHHHHHHHHHcccccc---hHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038936 77 ISDAQTLFDEMQERDV---CSYNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQ 150 (476)
Q Consensus 77 ~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 150 (476)
...|+..|-+..+-|+ ..|..|...|....+...|.+.|++..+- +...+....+.|++..+++.|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 5555555555444332 56888888888777888888888877654 45567777788888888888887743332
Q ss_pred hccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHH-
Q 038936 151 NFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWT- 229 (476)
Q Consensus 151 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 229 (476)
+......-...+...--.+...++...+..-++...+.. |.|...|..++.+|.++|++..|.++|.+...-++..+.
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 211111112222222223455667777777777766554 567788888899999999999999999777554443322
Q ss_pred H--HHHHHHhcCChhHHHHHHHHHHH
Q 038936 230 A--MIGRYFQEGRREEGFALFSELIK 253 (476)
Q Consensus 230 ~--l~~~~~~~~~~~~a~~~~~~~~~ 253 (476)
. ....-+..|.+.++...+.....
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1 12345567888888888777654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-05 Score=82.60 Aligned_cols=324 Identities=12% Similarity=0.065 Sum_probs=207.5
Q ss_pred HHHHhcCCHHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCC-----CCCc--hHHHHHHHH
Q 038936 100 SGFTKGGSLEQARNLFDEMPQ----RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS-----VSNK--FTLSSVLSA 168 (476)
Q Consensus 100 ~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~--~~~~~ll~~ 168 (476)
......|+++.+..+++.+.. .++.........+...|+++++...+......... .+.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 345567888888888877742 23444444556667889999999999877542111 1111 111222334
Q ss_pred HHhhhhhhhHHHHHHHHHHcCCCch----HHHHHHHHHHHHcCCCHHHHHHHHHhhcc-------cc--hhhHHHHHHHH
Q 038936 169 VSAIQCLRLGKEIHGYIMRTGFDSD----EVVWSALSDMYGKCGSINEARQIFDKMVD-------RD--VVSWTAMIGRY 235 (476)
Q Consensus 169 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~--~~~~~~l~~~~ 235 (476)
+...|+++.+...++.........+ ....+.+...+...|++++|...+++... +. ......+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 5678899999999988776321111 23445667778889999999999988743 11 12345566778
Q ss_pred HhcCChhHHHHHHHHHHHc----CCC--C-CHhhHHHHHHHHhccccHHHHHHHHHHHHHhC--CCC--chhhHHHHHHH
Q 038936 236 FQEGRREEGFALFSELIKS----GIR--P-NAFTFAGVLNACADHAAEELGKQVHGYMTRIG--YDP--YSFAASALVHM 304 (476)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~ 304 (476)
...|+++.|...+.+.... +.. + ....+..+...+...|+++.|...+.+..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999998886552 211 1 12233344455667799999999988876541 112 23344456677
Q ss_pred hhhcCChhhHHHHHccCCC----CC-hhhH-----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH---HHHHHHHHHH
Q 038936 305 YSKCGNVENSKKVFNGMPR----PD-LVSW-----TSLIAGYAQNGMPDKALEYFELLLKSGTQPDH---IVFVGVLTAC 371 (476)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~----~~-~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~ 371 (476)
+...|++++|...+..... .. ...+ ...+..+...|+.+.|...+............ ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 8889999999888877632 11 1111 11224455688999999888775542211111 1134566778
Q ss_pred hccCchhhHHHHHHHHHHhc---CCCC-ChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 372 THAGLVDKGLQYFHSIKEKH---GLTY-TADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 372 ~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
...|+.++|...++++.... +..+ ...+...++.++.+.|+.++|...+.++
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88999999999999877531 2222 2235667788899999999999999886
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-06 Score=76.31 Aligned_cols=353 Identities=14% Similarity=0.108 Sum_probs=209.0
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCC-chHHHHHHHHHHhhhh
Q 038936 99 ISGFTKGGSLEQARNLFDEMPQ---RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN-KFTLSSVLSAVSAIQC 174 (476)
Q Consensus 99 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~ 174 (476)
..+.+..|+++.|..+|.+... +|.+.|..-..+|...|++++|++=-.+-.+ ..|+ ...|+..-.++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~---l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR---LNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh---cCCchhhHHHHhHHHHHhccc
Confidence 3456778999999999988764 3667788888999999999999887766654 4444 4578888888889999
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHH------Hhhcccch--------hhHHHHHHHHHhc--
Q 038936 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIF------DKMVDRDV--------VSWTAMIGRYFQE-- 238 (476)
Q Consensus 175 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~------~~~~~~~~--------~~~~~l~~~~~~~-- 238 (476)
++.|..-|.+-++.. +.+...+..+..++... .. +.+.| ..+ ..++ ..|..++...-+.
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~~-~~~~~~~p~~~~~l-~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLED--YA-ADQLFTKPYFHEKL-ANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH--HH-hhhhccCcHHHHHh-hcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 999999999888765 56677777787777211 10 11111 111 0011 1122222211110
Q ss_pred -----CChhHHHHHHHHHHH--------cC-------CCC------------C----------HhhHHHHHHHHhccccH
Q 038936 239 -----GRREEGFALFSELIK--------SG-------IRP------------N----------AFTFAGVLNACADHAAE 276 (476)
Q Consensus 239 -----~~~~~a~~~~~~~~~--------~~-------~~~------------~----------~~~~~~l~~~~~~~~~~ 276 (476)
.+.+........+.. .| ..| | ..-...+.++..+..++
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 001111111111100 00 011 0 01123344445555666
Q ss_pred HHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCCh---h-------hHHHHHHHHHhcCChHHHH
Q 038936 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL---V-------SWTSLIAGYAQNGMPDKAL 346 (476)
Q Consensus 277 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~-------~~~~l~~~~~~~~~~~~A~ 346 (476)
+.+.+.+....+.. .+..-++....+|...|.+..+...-....+..- . ....+..+|.+.++++.++
T Consensus 241 ~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 241 ETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 77777776666654 4444455555667777766666554444332111 1 1222334556666777777
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHhhC-C
Q 038936 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA-DHYACIVDLLARSGRFHEAEDVISKM-P 424 (476)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 424 (476)
..|.+.+...-.|+.. .+....+++........ -+.|.. .-...-+..+.+.|++..|++.+.++ .
T Consensus 319 ~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred HHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 7777765543333321 12233334433333222 123322 11223366788999999999999996 4
Q ss_pred CCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 425 MKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 425 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
..| |...|.....+|.+.|.+..|+.-.+..++++|+....|..=+.++
T Consensus 387 r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al 436 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAAL 436 (539)
T ss_pred cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 445 7789999999999999999999999999999999888887665544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-07 Score=78.75 Aligned_cols=60 Identities=22% Similarity=0.231 Sum_probs=48.0
Q ss_pred HHHHHHHhcCChhhHHHHHhhC-CC---CC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038936 402 CIVDLLARSGRFHEAEDVISKM-PM---KP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 402 ~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 461 (476)
.++..|.+.|++.+|+..++++ .. .| ....+..++.++...|++++|...++.+....|+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4667788999999999999886 22 23 3457888999999999999999998888776663
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=5e-07 Score=78.44 Aligned_cols=130 Identities=12% Similarity=0.141 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc---CCh----hh
Q 038936 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS---GRF----HE 415 (476)
Q Consensus 343 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~ 415 (476)
++++.+++++++.. +-|..+|.....++...|+++++++.++++++. -+-+...|+....++.+. |+. ++
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHH
Confidence 45566666666543 234555655555666666666666666666653 233444555554444443 222 23
Q ss_pred HHHHHhh-CCCCC-cHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 416 AEDVISK-MPMKP-DKFLWASLLGGCRIH----GNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 416 A~~~~~~-~~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
+++...+ +...| |...|+.+...+... ++..+|...+.++++.+|+++.++..|+.+|.+
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 4444433 33344 455666666665552 344556677777777777777777777777653
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.4e-06 Score=67.98 Aligned_cols=252 Identities=13% Similarity=0.062 Sum_probs=153.1
Q ss_pred HHHHcCCCHHHHHHHHHhhcc--cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHH
Q 038936 202 DMYGKCGSINEARQIFDKMVD--RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279 (476)
Q Consensus 202 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 279 (476)
+-+.-.|.+..++..-..... .++..-..+.++|...|.+..... ++.... .|....+..+.......++.+.-
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHH
Confidence 344445777777666555432 233333445566776666544322 222222 34444444444444444444333
Q ss_pred H-HHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038936 280 K-QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ 358 (476)
Q Consensus 280 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 358 (476)
. .+.+.+.......+......-...|+..|++++|++...... +....-.=+..+.+..+.+-|...+++|.+-
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--- 166 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI--- 166 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 3 334444444333443334444466788888888888877733 3333333345567777888888888888873
Q ss_pred CcHHHHHHHHHHHhc----cCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC--CCCCcHHHH
Q 038936 359 PDHIVFVGVLTACTH----AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM--PMKPDKFLW 432 (476)
Q Consensus 359 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~ 432 (476)
-+..|.+.|..++.+ .+.+..|.-+|+++.++ .+|+..+.+..+.+....|++++|..+++.+ +...++.+.
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 366677777777653 35678888888888863 6788888888888888888888888888886 333456666
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCch
Q 038936 433 ASLLGGCRIHGNL-DLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 433 ~~l~~~~~~~g~~-~~A~~~~~~~~~~~p~~~~ 464 (476)
..++-+-...|.. +...+.+.+.....|+++.
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 6666555555554 4456677777777787653
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.2e-06 Score=68.52 Aligned_cols=166 Identities=16% Similarity=0.249 Sum_probs=108.5
Q ss_pred HHHHHhhhcCChhhHHHHHccCCC--CChh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 038936 300 ALVHMYSKCGNVENSKKVFNGMPR--PDLV-SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376 (476)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 376 (476)
.++-+...+|+.+.|..+++.+.. |++. +-..-..-+-..|++++|+++++.+++.+ +.|..++..=+...-..|+
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCC
Confidence 333444445555555555554432 2221 11111223455678888888888888775 4556666655666666777
Q ss_pred hhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhc---CChHHHHHH
Q 038936 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIH---GNLDLAKRA 451 (476)
Q Consensus 377 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~ 451 (476)
.-+|++.+....+. +..|.+.|..+.+.|...|++++|.-.++++ -..| ++..+..+...+.-. .+..-|.++
T Consensus 136 ~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 136 NLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred cHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77888888888874 6778888888888888888888888888886 3445 555566666665544 356778888
Q ss_pred HHHHHHcCCCCchhHHH
Q 038936 452 AEALFEIEPENPATYVT 468 (476)
Q Consensus 452 ~~~~~~~~p~~~~~~~~ 468 (476)
|.++++++|.+..++..
T Consensus 214 y~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 214 YERALKLNPKNLRALFG 230 (289)
T ss_pred HHHHHHhChHhHHHHHH
Confidence 88888888876555543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-05 Score=69.47 Aligned_cols=187 Identities=13% Similarity=0.059 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCCh--hhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHH
Q 038936 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV--ENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFE 350 (476)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 350 (476)
+++++..++.+.+.+ +.+..+++....++.+.|+. +++..+++++.+ .+..+|+.....+...|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 455555555555443 23333344333333333332 445555555543 355667777777777778888888888
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhcc---Cch----hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc----CChhhHHHH
Q 038936 351 LLLKSGTQPDHIVFVGVLTACTHA---GLV----DKGLQYFHSIKEKHGLTYTADHYACIVDLLARS----GRFHEAEDV 419 (476)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~ 419 (476)
++++.++. |...|+.....+.+. |.. ++.+++..+++.. .|-+...|+.+..++... ++..+|.+.
T Consensus 167 ~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 167 QLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 88876533 344454444444333 222 4566666666653 345666677777777663 344567777
Q ss_pred HhhC-CCCC-cHHHHHHHHHHHHhcC------------------ChHHHHHHHHHHHHcCCCCchhH
Q 038936 420 ISKM-PMKP-DKFLWASLLGGCRIHG------------------NLDLAKRAAEALFEIEPENPATY 466 (476)
Q Consensus 420 ~~~~-~~~p-~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~~~~p~~~~~~ 466 (476)
+.+. ...| +......++..|+... ..++|.++++.+-+.+|=...-|
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw 310 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYW 310 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHH
Confidence 7664 3333 4556666777666432 34678888888866777444333
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.3e-07 Score=68.64 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=90.8
Q ss_pred HHHHHHHcCCCCc-HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CC
Q 038936 348 YFELLLKSGTQPD-HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PM 425 (476)
Q Consensus 348 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 425 (476)
.++++... .|+ ......+...+...|++++|.+.++.+... .+.+...+..++.++.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556553 343 345666777788899999999999988864 3557778888999999999999999999886 34
Q ss_pred CC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 038936 426 KP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATY 466 (476)
Q Consensus 426 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 466 (476)
.| +...+..++..+...|++++|...++++++++|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 44 567788888889999999999999999999999887643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.7e-06 Score=81.59 Aligned_cols=216 Identities=13% Similarity=0.146 Sum_probs=149.0
Q ss_pred cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHH-HHHhccccHHHHHHHHHHHHHhCCCCchhhHHHH
Q 038936 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL-NACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301 (476)
Q Consensus 223 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 301 (476)
.+...|..|+..+...+++++|.++.+...+. .|+...+..+. ..+.+.++...+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 35567889999999999999999999977764 46555443333 244455554444433 23
Q ss_pred HHHhhhcCChhhHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhh
Q 038936 302 VHMYSKCGNVENSKKVFNGMPR--PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379 (476)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 379 (476)
+.......++.-+..+...+.. .+...+..+..+|-+.|+.++|..+++++++.. +-|....+.++..|... +.++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 3333334444333333333333 233467778899999999999999999999976 45677888899888888 9999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC----------------------CCCCcHHHHHHHHH
Q 038936 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM----------------------PMKPDKFLWASLLG 437 (476)
Q Consensus 380 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------------~~~p~~~~~~~l~~ 437 (476)
|.+++.++... +...+++.++.+++.++ ...--+.++.-+-.
T Consensus 168 A~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 168 AITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred HHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 99998888764 33333444444444443 11122334445556
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 438 GCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 438 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
.|...+++++++.+++.+++++|+|..+...|+..|..
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 67778899999999999999999999999999998863
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.7e-06 Score=75.32 Aligned_cols=216 Identities=13% Similarity=0.163 Sum_probs=170.0
Q ss_pred CCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038936 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269 (476)
Q Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (476)
.+|-...-..+...+...|-...|..+|++. ..|...+.+|...|+..+|..+..+..+ -+||...|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3455555567788899999999999999875 4677788999999999999999888877 37888888888887
Q ss_pred HhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCC---ChhhHHHHHHHHHhcCChHHHH
Q 038936 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP---DLVSWTSLIAGYAQNGMPDKAL 346 (476)
Q Consensus 270 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 346 (476)
.....-++.|.++.+..... .-..+.....+.++++++.+.|+.-.+- -..+|..+..+..+.++++.|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 77777778888887765433 2223333445578899999999876653 3468888888888999999999
Q ss_pred HHHHHHHHcCCCCcH-HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 347 EYFELLLKSGTQPDH-IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 347 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
+.|..-.. ..||. ..|+.+-.+|.+.++-.+|...++++.+- + ..+..+|...+....+.|.+++|++.+.++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99988877 45655 57999999999999999999999998864 3 555666778888888999999999998876
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.5e-06 Score=80.91 Aligned_cols=140 Identities=11% Similarity=0.083 Sum_probs=92.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHH
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI-VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 403 (476)
++..+..|.....+.|++++|..+++...+ +.|+.. ....++.++.+.+++++|...+++.... -+.+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 355666667777777777777777777776 345443 4555666677777777777777777753 34455556667
Q ss_pred HHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 038936 404 VDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468 (476)
Q Consensus 404 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 468 (476)
+.++.+.|++++|..+|+++ ...|+ ..++..++.++...|+.++|...|+++++...+-...|..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 77777777777777777775 23333 5567777777777777777777777777766555445443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.3e-06 Score=69.59 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHhhcccch------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh--hHH
Q 038936 193 DEVVWSALSDMYGKCGSINEARQIFDKMVDRDV------VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF--TFA 264 (476)
Q Consensus 193 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~ 264 (476)
....+..++..+...|++++|...|+++.+.++ ..+..+..++...|++++|...++++.+........ ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 344556666777777777777777777644221 245666677777777777777777777643111111 222
Q ss_pred HHHHHHhcc--------ccHHHHHHHHHHHHHh
Q 038936 265 GVLNACADH--------AAEELGKQVHGYMTRI 289 (476)
Q Consensus 265 ~l~~~~~~~--------~~~~~a~~~~~~~~~~ 289 (476)
.+..++... |+.+.|...++.+.+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 222233222 5556666666665554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.5e-06 Score=76.78 Aligned_cols=233 Identities=10% Similarity=0.070 Sum_probs=176.0
Q ss_pred CCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc--cchhhHHHHHHH
Q 038936 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD--RDVVSWTAMIGR 234 (476)
Q Consensus 157 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~ 234 (476)
|--..-..+...+...|-...|..+++.+. .+..++.+|...|+..+|..+..+-.+ ||+..|..+++.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDV 466 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence 333344556667778888888888887654 566788999999999999999887755 566778888887
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhH
Q 038936 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314 (476)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 314 (476)
.....-+++|.++.+..... .-..+.....+.++++++.+.++.-.+.+ +....+|..+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 77777788888888765432 11222222344789999999999888775 66778888888999999999999
Q ss_pred HHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhc
Q 038936 315 KKVFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH 391 (476)
Q Consensus 315 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 391 (476)
.+.|..... | +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+-...+.|.+++|++.+.++....
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 999988774 4 45689999999999999999999999999987 4445566666667789999999999999987643
Q ss_pred CCCCChhhHHHHHHHH
Q 038936 392 GLTYTADHYACIVDLL 407 (476)
Q Consensus 392 ~~~~~~~~~~~l~~~~ 407 (476)
....|..+...++...
T Consensus 618 ~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRTV 633 (777)
T ss_pred hhcccchhhHHHHHHH
Confidence 3333555555454443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.1e-06 Score=67.00 Aligned_cols=153 Identities=14% Similarity=0.082 Sum_probs=103.7
Q ss_pred HHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 038936 299 SALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375 (476)
Q Consensus 299 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 375 (476)
..+-..+...|+-+....+...... .+.......+....+.|++.+|+..+++..... ++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 4445556666666666666655432 333455557777777888888888888777653 566777777777788888
Q ss_pred chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCC-C-CcHHHHHHHHHHHHhcCChHHHHHHHH
Q 038936 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM-K-PDKFLWASLLGGCRIHGNLDLAKRAAE 453 (476)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~l~~~~~~~g~~~~A~~~~~ 453 (476)
+.+.|...|.+..+-. +-++..++.++-.|.-.|+++.|..++..... . .|..+-..+.......|++++|+.+..
T Consensus 149 r~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 8888888777777642 33444577777777778888888887777522 2 256666777777777788888777665
Q ss_pred H
Q 038936 454 A 454 (476)
Q Consensus 454 ~ 454 (476)
+
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 5
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.5e-07 Score=67.74 Aligned_cols=118 Identities=8% Similarity=-0.072 Sum_probs=89.2
Q ss_pred HHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC
Q 038936 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395 (476)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 395 (476)
.++++..+-++..+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+++... .+.
T Consensus 14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DAS 90 (144)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCC
Confidence 34444444455556667778888999999999999988864 346677888888899999999999999999863 456
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHH
Q 038936 396 TADHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLL 436 (476)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 436 (476)
+...+..++.++...|++++|+..|+++ ...|+ ...+....
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 7788888999999999999999999885 55554 33444333
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.5e-08 Score=52.98 Aligned_cols=34 Identities=44% Similarity=0.753 Sum_probs=26.6
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcc
Q 038936 55 SGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88 (476)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 88 (476)
.|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677888888888888888888888888887763
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.5e-06 Score=82.85 Aligned_cols=226 Identities=15% Similarity=0.202 Sum_probs=127.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCH---hhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHH
Q 038936 226 VSWTAMIGRYFQEGRREEGFALFSELIKS-GIRPNA---FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301 (476)
Q Consensus 226 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 301 (476)
..|-..|......++.++|.++.++.+.. +++-.. ..|.++++.-..-|.-+...++|+++.+.- ..-..|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHH
Confidence 34666666666777777777777766543 111111 234444444444555666666666665542 223445566
Q ss_pred HHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--H-HHHHHHHHHHhccC
Q 038936 302 VHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD--H-IVFVGVLTACTHAG 375 (476)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~-~~~~~l~~~~~~~~ 375 (476)
...|.+.+.+++|.++++.|.+ .....|...+..+.++++-+.|..++.+.++. -|. . ....-.+..-.+.|
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcC
Confidence 6667777777777777666664 34556666666666666666677777666663 232 1 12223333345666
Q ss_pred chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC---CCCCc--HHHHHHHHHHHHhcCChHHHHH
Q 038936 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM---PMKPD--KFLWASLLGGCRIHGNLDLAKR 450 (476)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 450 (476)
+.+++..+|+..... .|--...|+.+++.-.+.|+.+.+..+|+++ +..|- -..|...+..--.+|+-+.++.
T Consensus 1615 DaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 777777677666653 3334455666666666777777777777664 22332 2244444444444566555555
Q ss_pred HHHHHHH
Q 038936 451 AAEALFE 457 (476)
Q Consensus 451 ~~~~~~~ 457 (476)
+=.++.+
T Consensus 1693 VKarA~E 1699 (1710)
T KOG1070|consen 1693 VKARAKE 1699 (1710)
T ss_pred HHHHHHH
Confidence 5555554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.6e-08 Score=52.58 Aligned_cols=33 Identities=39% Similarity=0.703 Sum_probs=27.2
Q ss_pred cCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhh
Q 038936 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220 (476)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 220 (476)
+|++||..+|+.+|++|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 367888888888888888888888888888877
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.2e-05 Score=63.44 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=101.7
Q ss_pred HHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCC-ChhhHHHHHHHHHh----cC
Q 038936 266 VLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP-DLVSWTSLIAGYAQ----NG 340 (476)
Q Consensus 266 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~ 340 (476)
-...|+..++++.|.+..+... +......=+..+.+..+++-|...+++|.+. +..+.+.|.+++.+ .+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccch
Confidence 3345667777777777665421 1122223345566677777777777777764 34456656666553 35
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH-HH
Q 038936 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE-DV 419 (476)
Q Consensus 341 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~ 419 (476)
...+|.-+|++|-+. .+|++.+.+..+.++...|++++|..+++.+..+ -..++++...++.+-...|...++. +.
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 678899999999775 5788889998888899999999999999999875 3556667777777777777765554 34
Q ss_pred HhhC
Q 038936 420 ISKM 423 (476)
Q Consensus 420 ~~~~ 423 (476)
+.+.
T Consensus 265 l~QL 268 (299)
T KOG3081|consen 265 LSQL 268 (299)
T ss_pred HHHH
Confidence 4444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00052 Score=65.28 Aligned_cols=216 Identities=13% Similarity=0.186 Sum_probs=140.5
Q ss_pred hhhcCCHHHHHHHHHhcC--CCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 038936 5 LCNQRRLKEALQILHQIS--HPSPSIYSSLIQF--CRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 80 (476)
....+++.+|+....++. .||.. |...+.+ +.+.|+.++|..+++.....+.. |..|...+-..|...|+.++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 345678888888888875 34333 3334443 46889999999998888776544 778888888999999999999
Q ss_pred HHHHHHccc--ccchHHHHHHHHHHhcCCHHH----HHHHHhcCCCCCcchHHHHHHHHHhc-CC---------hhHHHH
Q 038936 81 QTLFDEMQE--RDVCSYNTMISGFTKGGSLEQ----ARNLFDEMPQRDNFSWTAMISGYVRY-NQ---------PIEALD 144 (476)
Q Consensus 81 ~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~l~~~~~~~-~~---------~~~a~~ 144 (476)
..+|+...+ |+......+..+|++.+++.+ |.++++..+++--..|+ +++...+. .. ..-|.+
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHHH
Confidence 999999886 555566667777888776654 67777766654433443 33333322 11 123555
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHH-HHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc
Q 038936 145 LYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG-YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR 223 (476)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 223 (476)
.++.+....|...+..-...-+..+...|++++|.+++. ...+.-.+.+...-+.-+..+...++|.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 666666534322333333344445566778888888884 3333333444445556677778888888887777777554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.2e-05 Score=76.48 Aligned_cols=222 Identities=13% Similarity=0.167 Sum_probs=159.9
Q ss_pred CchHHHHHHHHHHhhhhhhhHHHHHHHHHHcC-CC---chHHHHHHHHHHHHcCCCHHHHHHHHHhhccc-c-hhhHHHH
Q 038936 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG-FD---SDEVVWSALSDMYGKCGSINEARQIFDKMVDR-D-VVSWTAM 231 (476)
Q Consensus 158 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~l 231 (476)
+...|...+......++.+.|.++.++++..- +. --..+|.++++.-..-|.-+...++|+++.+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34456666777777778888888877776542 11 12346777777777778888888888888663 3 3457888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCC-CchhhHHHHHHHhhhcCC
Q 038936 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD-PYSFAASALVHMYSKCGN 310 (476)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 310 (476)
...|.+.+.+++|.++++.|.+. +......|...+..+.+.++-+.|..++.+..+.-.+ .........+++-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 88899999999999999998876 3456677888888888888888888888887765211 134555667777788899
Q ss_pred hhhHHHHHccCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHhccCchhhH
Q 038936 311 VENSKKVFNGMPRP---DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI--VFVGVLTACTHAGLVDKG 380 (476)
Q Consensus 311 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a 380 (476)
.+.++.+|+..... -...|+..+..-.++|+.+.+..+|++....++.|-.. .|...+..--+.|+-..+
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 99988888887752 45688889999899999999999999998887766543 344444433344444333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.5e-06 Score=67.47 Aligned_cols=114 Identities=11% Similarity=0.083 Sum_probs=56.2
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHH-HHhcCC--hHHHHH
Q 038936 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAG-YAQNGM--PDKALE 347 (476)
Q Consensus 274 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~-~~~~~~--~~~A~~ 347 (476)
++.+++...++...+.+ +.+...+..+...|...|++++|...|++..+ .+...+..+..+ +...|+ .++|.+
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 33444444444444443 44444455555555555555555555554442 233344444443 234444 355666
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
++++..+.+ +.+...+..+...+...|++++|+..|+++.+
T Consensus 132 ~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666655543 12334455555555556666666666665554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-05 Score=63.74 Aligned_cols=156 Identities=16% Similarity=0.093 Sum_probs=116.8
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcC
Q 038936 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNG 340 (476)
Q Consensus 264 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 340 (476)
..+-..+...|+-+....+....... .+.+.......+....+.|++..|...+++... +|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 33444455556555555555443322 244555566677888888888888888888764 57788999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHH
Q 038936 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVI 420 (476)
Q Consensus 341 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 420 (476)
++++|..-|.+..+.. .-++..++.+...+.-.|+.+.|..++...... -+-+..+-..+.......|++++|.++.
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 9999999999988852 234567788888888999999999999888863 3346777888888999999999999888
Q ss_pred hhC
Q 038936 421 SKM 423 (476)
Q Consensus 421 ~~~ 423 (476)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 764
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.4e-07 Score=73.20 Aligned_cols=101 Identities=13% Similarity=0.122 Sum_probs=81.8
Q ss_pred HHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHHHHhcCChHH
Q 038936 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGGCRIHGNLDL 447 (476)
Q Consensus 370 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 447 (476)
-..+.+++++|+..|.++++- .|-+...|..-+.+|.+.|.++.|++-.+.. .+.|. ..+|..|+.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 356788899999999998852 2345555667788899999999999888875 56664 4589999999999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 448 AKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 448 A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
|++.|+++++++|+|.....+|.++
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHH
Confidence 9999999999999999888877654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.1e-06 Score=63.39 Aligned_cols=127 Identities=17% Similarity=0.140 Sum_probs=93.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC--hhhHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD--HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT--ADHYACI 403 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 403 (476)
.|..++..+ ..++...+...++.+.+...... ......+...+...|++++|...|+.+... ...|+ ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 445555555 47888999888999988642221 223444667788999999999999999975 32222 2244567
Q ss_pred HHHHHhcCChhhHHHHHhhCCCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038936 404 VDLLARSGRFHEAEDVISKMPMK-PDKFLWASLLGGCRIHGNLDLAKRAAEALF 456 (476)
Q Consensus 404 ~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 456 (476)
+.++...|++++|+..++..... .....+...+..+...|++++|...|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 88899999999999999886433 345567788888999999999999999874
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.5e-05 Score=75.05 Aligned_cols=282 Identities=10% Similarity=0.022 Sum_probs=138.0
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHH
Q 038936 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201 (476)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 201 (476)
+...+..|+..+...+++++|.++.+......+..+....+..+ .+.+.++...+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhh-----------------hhh
Confidence 44567777777778888888888877665522222222222222 33333332222211 222
Q ss_pred HHHHcCCCHHHHHHHHHhhcc--cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHH
Q 038936 202 DMYGKCGSINEARQIFDKMVD--RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279 (476)
Q Consensus 202 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 279 (476)
.......++.-...+...+.+ .+..++..+..+|-+.|+.+++...++++++.. +.|....+.+...++.. +.+.|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 333333333222222223322 122245556666666666666666666666655 44555566666666555 66666
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCC
Q 038936 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS-GTQ 358 (476)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~ 358 (476)
.+++...... |...+++.++..+|.++..-++.-+ +.-..+.+++... |..
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~-------------d~f~~i~~ki~~~~~~~ 220 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDF-------------DFFLRIERKVLGHREFT 220 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccc-------------hHHHHHHHHHHhhhccc
Confidence 6665554432 4444555556655555554333221 1112222222222 111
Q ss_pred CcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHH
Q 038936 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGG 438 (476)
Q Consensus 359 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 438 (476)
--..++..+-..|...+++++++.+++.+.+. -+.+.....-++.+|. +.+ +.+|...-+..+..
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~--~kY----------~~~~~~ee~l~~s~- 285 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK--EKY----------KDHSLLEDYLKMSD- 285 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH--HHc----------cCcchHHHHHHHhc-
Confidence 22234444555666777788888888777753 2334444445555543 111 11111111111111
Q ss_pred HHhc-CChHHHHHHHHHHHHcCCCCchhHH
Q 038936 439 CRIH-GNLDLAKRAAEALFEIEPENPATYV 467 (476)
Q Consensus 439 ~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~ 467 (476)
.... ..+..++.-|++.+-.+|.|-..|.
T Consensus 286 l~~~~~~~~~~i~~fek~i~f~~G~yv~H~ 315 (906)
T PRK14720 286 IGNNRKPVKDCIADFEKNIVFDTGNFVYHR 315 (906)
T ss_pred cccCCccHHHHHHHHHHHeeecCCCEEEEc
Confidence 1122 3567788888888888887754443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.2e-05 Score=68.17 Aligned_cols=138 Identities=12% Similarity=0.079 Sum_probs=92.2
Q ss_pred HHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCchh
Q 038936 303 HMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD-HIVFVGVLTACTHAGLVD 378 (476)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 378 (476)
..+...|.+++|+..++.+.+ | |+..+......+.+.++.++|.+.++++... .|+ ......+..++.+.|++.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 344556677777777776653 3 4445555566777777778888877777774 454 444555667777777777
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038936 379 KGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458 (476)
Q Consensus 379 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 458 (476)
+|+..++.... ..+.++..|..|+++|...|+..+|.. +....+...|++++|+..+..+.+.
T Consensus 392 eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~---------------A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 392 EAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALL---------------ARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHH---------------HHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 77777777765 345566677777777777777655543 3344566677777777777777765
Q ss_pred C
Q 038936 459 E 459 (476)
Q Consensus 459 ~ 459 (476)
.
T Consensus 455 ~ 455 (484)
T COG4783 455 V 455 (484)
T ss_pred c
Confidence 4
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.8e-06 Score=63.05 Aligned_cols=106 Identities=13% Similarity=0.128 Sum_probs=75.2
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc----HHHHHHHH
Q 038936 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY-TADHYACIVDLLARSGRFHEAEDVISKM-PMKPD----KFLWASLL 436 (476)
Q Consensus 363 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 436 (476)
++..++..+.+.|++++|.+.+.++...++-.+ ....+..++.++.+.|++++|.+.++.+ ...|+ ...+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445566667777888888888877776422111 1345666778888888888888888775 22333 44677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 038936 437 GGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468 (476)
Q Consensus 437 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 468 (476)
.++...|++++|...++++++..|+++.+...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 88888899999999999999999988766544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.5e-06 Score=74.03 Aligned_cols=124 Identities=12% Similarity=0.074 Sum_probs=99.1
Q ss_pred HHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCch
Q 038936 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377 (476)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 377 (476)
...|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++.++.. +-+...+..-...+.+.+++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 34566667777888888888888888777777778888888888899999999988753 33555666666778889999
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCC
Q 038936 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424 (476)
Q Consensus 378 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 424 (476)
+.|+++.+++... .|.+..+|..|+.+|.+.|++++|+-.+..++
T Consensus 251 ~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999863 35566789999999999999999999888774
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.5e-05 Score=75.24 Aligned_cols=132 Identities=12% Similarity=0.004 Sum_probs=81.4
Q ss_pred CCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHH
Q 038936 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLI 333 (476)
Q Consensus 257 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~ 333 (476)
+.+...+..|.....+.|..++|..+++...+.. |.+......+...+.+.+++++|+...++... | +......+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 4455666666666666777777777777666653 34445555566666666667666666666654 2 233455555
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
.++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+++.+.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666777777776666632 223456666666666666666666666666653
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0014 Score=57.65 Aligned_cols=415 Identities=13% Similarity=0.115 Sum_probs=233.7
Q ss_pred hhhcCCHHHHHHHHHhcC---CCCHHH------HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH--HHh
Q 038936 5 LCNQRRLKEALQILHQIS---HPSPSI------YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDM--YAK 73 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~---~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 73 (476)
+-+++++.+|.++|.++- ..++.. -+.+++++.. ++.+.....+..+.+.. | ...|..+..+ +-+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 457899999999999984 223222 3345566644 56777777777776642 2 3344444433 337
Q ss_pred cCChHHHHHHHHHcccc------------------cchHHHHHHHHHHhcCCHHHHHHHHhcCCCC--------CcchHH
Q 038936 74 CGNISDAQTLFDEMQER------------------DVCSYNTMISGFTKGGSLEQARNLFDEMPQR--------DNFSWT 127 (476)
Q Consensus 74 ~g~~~~A~~~~~~~~~~------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~ 127 (476)
.+.+.+|.+.+....+. +-..=+..+..++..|.+.+++.+++++..+ +..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 88999999988766531 1122345677888999999999999888642 667777
Q ss_pred HHHHHHHhc--------CC-------hhHHHHHHHHHHh-----ccCCCCCchHHHHHHHHHHhh--hhhhhHHHHHHHH
Q 038936 128 AMISGYVRY--------NQ-------PIEALDLYRMMQN-----FENSVSNKFTLSSVLSAVSAI--QCLRLGKEIHGYI 185 (476)
Q Consensus 128 ~l~~~~~~~--------~~-------~~~a~~~~~~~~~-----~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~ 185 (476)
.++-.+.+. .. ++-+.-..+++.. .....|......+++....-. .....-.++++.-
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 754433321 11 1222222233322 113445444455554443322 2233333444444
Q ss_pred HHcCCCchHH-HHHHHHHHHHcCCCHHHHHHHHHhhc--------ccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038936 186 MRTGFDSDEV-VWSALSDMYGKCGSINEARQIFDKMV--------DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGI 256 (476)
Q Consensus 186 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 256 (476)
.+.-+.|+-. +...+...+.. +.+++..+-+.+. +.=+.++..++....+.++...|.+.+.-+.-.
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l-- 327 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL-- 327 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--
Confidence 4444555433 33344444443 5555555554442 233457888888899999999999888877654
Q ss_pred CCCHhhHH-------HHHHHHh-ccc---cHHHHHHHHHHHHHhCCCCchhhHHHHHH---HhhhcCC-hhhHHHHHccC
Q 038936 257 RPNAFTFA-------GVLNACA-DHA---AEELGKQVHGYMTRIGYDPYSFAASALVH---MYSKCGN-VENSKKVFNGM 321 (476)
Q Consensus 257 ~~~~~~~~-------~l~~~~~-~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~-~~~a~~~~~~~ 321 (476)
.|+...-. .+-+..+ ... +...-..+|+.....++.. ......|+. -+-+.|. -++|+++++.+
T Consensus 328 dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 328 DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 34332111 1112222 111 2223334455544443221 122223332 2344554 77888888877
Q ss_pred CC---CChhhHHHHH----HHHHh---cCChHHHHHHHHHHHHcCCCCcHH----HHHHHHHH--HhccCchhhHHHHHH
Q 038936 322 PR---PDLVSWTSLI----AGYAQ---NGMPDKALEYFELLLKSGTQPDHI----VFVGVLTA--CTHAGLVDKGLQYFH 385 (476)
Q Consensus 322 ~~---~~~~~~~~l~----~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~--~~~~~~~~~a~~~~~ 385 (476)
.+ -|..+-|.+. ..|.+ ...+.+-+.+-+-..+.|++|-.+ .-+.+.++ +..+|++.++.-.-.
T Consensus 407 l~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~ 486 (549)
T PF07079_consen 407 LQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSS 486 (549)
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 65 3433333222 22322 233444444555556677776433 34444444 457899998876544
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHH
Q 038936 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWA 433 (476)
Q Consensus 386 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 433 (476)
-+. .+.|++.+|..++-++....++++|...+..++ |+..+++
T Consensus 487 WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~d 529 (549)
T PF07079_consen 487 WLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRD 529 (549)
T ss_pred HHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHH
Confidence 333 478999999999999999999999999999986 3444443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0017 Score=58.41 Aligned_cols=182 Identities=11% Similarity=0.092 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcC---ChhhHHHHHccCCC----CChhhHHHHHHHHHhcCChHHHHHH
Q 038936 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG---NVENSKKVFNGMPR----PDLVSWTSLIAGYAQNGMPDKALEY 348 (476)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~ 348 (476)
.+++..+++.....-...+..+|..+.+.--..- ..+.....++++.. .-..+|..++..-.+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455556655544433334444444432221111 24445555555442 3345678888888888889999999
Q ss_pred HHHHHHcCCCC-cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCC---
Q 038936 349 FELLLKSGTQP-DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP--- 424 (476)
Q Consensus 349 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 424 (476)
|.+..+.+..+ +......++.-+ -.++..-|..+|+--..++| .++.-....+..+...++-+.|..+|++..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999988777 445566666644 46788999999998887643 344445677888899999999999999972
Q ss_pred CCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 425 MKPD--KFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 425 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
..|+ ...|..++.--..-|+...+.++-++....-|
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 2343 45899999888888999999999998887666
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.3e-06 Score=72.74 Aligned_cols=101 Identities=15% Similarity=0.082 Sum_probs=59.9
Q ss_pred HHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHH
Q 038936 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDL 447 (476)
Q Consensus 370 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 447 (476)
.+...|++++|++.|+++++. .+.+...|..++.+|.+.|++++|+..++++ ...| +...|..++.+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 344556666666666666643 2334455556666666666666666666664 3333 34456666666666666666
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 448 AKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 448 A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
|+..|+++++++|+++.....+..+
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6666666666666666665555544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.8e-05 Score=61.11 Aligned_cols=142 Identities=18% Similarity=0.198 Sum_probs=115.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI-VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 406 (476)
.|..++-+....|+.+-|...++.+...- |.+. .-..-..-+...|.+++|+++|+...++ -|.|..++..-+-+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 45666777888999999999999998863 4433 3222233356689999999999999975 35566677777777
Q ss_pred HHhcCChhhHHHHHhhC--CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 407 LARSGRFHEAEDVISKM--PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 407 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
.-..|+.-+|++-+... ....|...|..+...|...|++++|.-.+++++=..|.|+..+..|+.++
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~ 198 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVL 198 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 78889888998888775 45569999999999999999999999999999999999999999998875
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00011 Score=64.82 Aligned_cols=136 Identities=13% Similarity=0.053 Sum_probs=106.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC-hhhHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT-ADHYACIVDL 406 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 406 (476)
.+-.....+...|++++|+..++.++..- +-|+.........+.+.++.++|.+.++++... .|+ ......++.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~a 383 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHH
Confidence 33334445667889999999999988862 345555566677889999999999999999964 444 6667788999
Q ss_pred HHhcCChhhHHHHHhhC--CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 038936 407 LARSGRFHEAEDVISKM--PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYV 467 (476)
Q Consensus 407 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 467 (476)
|.+.|+..+|++.++.. ..+.|+..|..+..+|...|+..++...+.+...+...-..+..
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~ 446 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAII 446 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999986 34447889999999999999999999999988887654333333
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-05 Score=69.73 Aligned_cols=126 Identities=16% Similarity=0.160 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccc
Q 038936 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274 (476)
Q Consensus 195 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 274 (476)
.....|+..+...++++.|+.+|+++.+.++.....++..+...++-.+|.+++++..+.. +.+...+..-...+...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445667777778899999999999988888777788888888888889999999888653 445555555566678888
Q ss_pred cHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCC
Q 038936 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322 (476)
Q Consensus 275 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (476)
+++.|..+.+++.... |.+..+|..|..+|...|+++.|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8999999999888874 5556688888888888888888888888776
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.33 E-value=2e-06 Score=55.53 Aligned_cols=62 Identities=24% Similarity=0.345 Sum_probs=51.8
Q ss_pred HHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 038936 402 CIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 402 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 463 (476)
.++..+.+.|++++|++.|+++ ...| +...+..++.++...|++++|...|+++++.+|+||
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3567888999999999999986 5556 566889999999999999999999999999999875
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.9e-05 Score=60.01 Aligned_cols=102 Identities=15% Similarity=0.135 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 406 (476)
.....+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|...+++.... .+.+...+..++.+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 334455666777788888888888877754 335566777777777888888888888877653 35556677777888
Q ss_pred HHhcCChhhHHHHHhhC-CCCCcHHH
Q 038936 407 LARSGRFHEAEDVISKM-PMKPDKFL 431 (476)
Q Consensus 407 ~~~~g~~~~A~~~~~~~-~~~p~~~~ 431 (476)
+...|++++|.+.|++. ...|+...
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhccccch
Confidence 88888888888888775 44454443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.28 E-value=3e-06 Score=58.01 Aligned_cols=80 Identities=16% Similarity=0.320 Sum_probs=35.3
Q ss_pred cCChHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH
Q 038936 339 NGMPDKALEYFELLLKSGTQ-PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417 (476)
Q Consensus 339 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 417 (476)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|.+++++ ... + +.+......++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-~-~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-D-PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-H-HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-C-CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34555555555555554321 1233333345555555555555555554 111 0 112233334455555555555555
Q ss_pred HHHh
Q 038936 418 DVIS 421 (476)
Q Consensus 418 ~~~~ 421 (476)
++|+
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2e-05 Score=59.23 Aligned_cols=96 Identities=10% Similarity=-0.028 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHH
Q 038936 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGC 439 (476)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 439 (476)
.....+..-+...|++++|..+|+-+..- -+-+..-|..|+-++...|++++|+..+..+ ...| |+..+-.++.++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34455666678899999999999988853 2445667888999999999999999999986 3344 667888889999
Q ss_pred HhcCChHHHHHHHHHHHHcC
Q 038936 440 RIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 440 ~~~g~~~~A~~~~~~~~~~~ 459 (476)
...|+.+.|.+.|+.++..-
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999865
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.5e-05 Score=60.01 Aligned_cols=112 Identities=17% Similarity=0.242 Sum_probs=78.7
Q ss_pred cCChhhHHHHHccCCC--CCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhccCchhh
Q 038936 308 CGNVENSKKVFNGMPR--PDL----VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH--IVFVGVLTACTHAGLVDK 379 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 379 (476)
.++...+...++.+.+ |+. ...-.+...+...|++++|...|+........|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555553 221 22333556788899999999999999987633322 244557778889999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 380 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
|+..++... +.......+...+++|.+.|++++|...|++
T Consensus 104 Al~~L~~~~---~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIP---DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhcc---CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999986643 2344555677889999999999999998876
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0011 Score=57.31 Aligned_cols=138 Identities=14% Similarity=0.188 Sum_probs=75.9
Q ss_pred HHHHHHHHHHcC-CCHHHHHHHHHhhcc----cc-----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-----CH
Q 038936 196 VWSALSDMYGKC-GSINEARQIFDKMVD----RD-----VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP-----NA 260 (476)
Q Consensus 196 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~ 260 (476)
.+..+...|... |++++|++.|++..+ .+ ...+..+...+.+.|++++|..+|++........ +.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455666666 677777777766632 11 1234556677888888888888888876643221 11
Q ss_pred h-hHHHHHHHHhccccHHHHHHHHHHHHHhC--CCCc--hhhHHHHHHHhhhc--CChhhHHHHHccCCCCChhhHHHHH
Q 038936 261 F-TFAGVLNACADHAAEELGKQVHGYMTRIG--YDPY--SFAASALVHMYSKC--GNVENSKKVFNGMPRPDLVSWTSLI 333 (476)
Q Consensus 261 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~l~ 333 (476)
. .+...+-++...||...|...++...... +..+ ......|+.++-.. ..++.++.-|+.+.+.|..--..|+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~ 275 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLL 275 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHH
Confidence 1 12223334556678888888888776552 2222 33445566666443 3566777778887777765544443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.1e-05 Score=60.83 Aligned_cols=117 Identities=19% Similarity=0.203 Sum_probs=75.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHH
Q 038936 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD--HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403 (476)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 403 (476)
...+..+...+...|++++|+..|++..+.+..+. ...+..+...+.+.|++++|...++++... .+.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 34566666777777778888777777776432222 245666677777777777777777777753 23344555666
Q ss_pred HHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 404 VDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 404 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
+.++...|+...+..-++.+ .+.+++|.+.++++++.+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh
Confidence 66666666655544322221 123678899999999999987
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.2e-05 Score=70.24 Aligned_cols=140 Identities=19% Similarity=0.147 Sum_probs=100.3
Q ss_pred CCChhhHHHHHHHH--HhcC---ChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhcc--------CchhhHHHHHHHHH
Q 038936 323 RPDLVSWTSLIAGY--AQNG---MPDKALEYFELLLKSGTQPDH-IVFVGVLTACTHA--------GLVDKGLQYFHSIK 388 (476)
Q Consensus 323 ~~~~~~~~~l~~~~--~~~~---~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------~~~~~a~~~~~~~~ 388 (476)
..+...|...+.+. ...+ +...|..+|++.++. .|+. ..+..+..++... .+...+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 35667777777763 3333 367899999999985 4654 3344433333221 12344445544444
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 038936 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 389 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 464 (476)
.....+.++..|..++......|++++|...++++ ...|+...|..++..+...|+.++|...|++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 32123445677888888888899999999999996 67788889999999999999999999999999999998774
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0038 Score=56.24 Aligned_cols=180 Identities=14% Similarity=0.115 Sum_probs=119.6
Q ss_pred hhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCC-chhhHHHHHHHhhhcCChhhHHHHHc
Q 038936 241 REEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP-YSFAASALVHMYSKCGNVENSKKVFN 319 (476)
Q Consensus 241 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 319 (476)
.+.....++++...-...-..+|...|+...+...+..|..+|.+..+.+..+ ...+.++++..||. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 55556666666554322333566677777777788888888888888887666 66777777776665 56677888887
Q ss_pred cCCC--CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhccCchhhHHHHHHHHHHhcC--
Q 038936 320 GMPR--PDL-VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH--IVFVGVLTACTHAGLVDKGLQYFHSIKEKHG-- 392 (476)
Q Consensus 320 ~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 392 (476)
.-.+ +|. .--...+.-+...++-..+..+|++....++.|+. ..|..++.--+.-|+...+.++-++....+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 6654 443 33445666677788888888888888887666554 5788888877888888888888777776543
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHh
Q 038936 393 LTYTADHYACIVDLLARSGRFHEAEDVIS 421 (476)
Q Consensus 393 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 421 (476)
..+....-..+++.|.-.+...--..-++
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPCSLDELK 534 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccccHHHHH
Confidence 23333344455555655555444333333
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0054 Score=57.53 Aligned_cols=355 Identities=13% Similarity=0.086 Sum_probs=179.6
Q ss_pred HhcCChhHHHHHHHHH--------HHcCCCCChhhHHH-----HHHHHHhcCChHHHHHHHHHccccc---chHHHHHHH
Q 038936 37 RQNRALEEGKKVHSHL--------KSSGFKPGVFISNC-----LLDMYAKCGNISDAQTLFDEMQERD---VCSYNTMIS 100 (476)
Q Consensus 37 ~~~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~ 100 (476)
.+.-++++-..+...+ .+.|++.+..-|.. ++..+...+.+..|+++-..+..|. ...|.....
T Consensus 400 l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~ 479 (829)
T KOG2280|consen 400 LRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWAR 479 (829)
T ss_pred cccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHH
Confidence 3445555554444433 24466666666654 4666777889999999988887665 456666666
Q ss_pred HHHhcC---CHHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCC---CCchHHHHHHHHHHhh
Q 038936 101 GFTKGG---SLEQARNLFDEMPQ--RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV---SNKFTLSSVLSAVSAI 172 (476)
Q Consensus 101 ~~~~~g---~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~ 172 (476)
.+++.. +-+-+..+-+++.. .+..+|..+..-....|+.+-|..+++.=....... .+-..+...+.-+...
T Consensus 480 ~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies 559 (829)
T KOG2280|consen 480 RKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIES 559 (829)
T ss_pred HHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhc
Confidence 666552 33445555555555 366678888888888899998888876432211111 1223344555556666
Q ss_pred hhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHH--H
Q 038936 173 QCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS--E 250 (476)
Q Consensus 173 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--~ 250 (476)
|+.+....++-.+.+.- +...+ +....+...|..+|.+..+....+ . +..+...++-.++...|. .
T Consensus 560 ~d~~Li~~Vllhlk~~~---~~s~l------~~~l~~~p~a~~lY~~~~r~~~~~--~-l~d~y~q~dn~~~~a~~~~q~ 627 (829)
T KOG2280|consen 560 GDTDLIIQVLLHLKNKL---NRSSL------FMTLRNQPLALSLYRQFMRHQDRA--T-LYDFYNQDDNHQALASFHLQA 627 (829)
T ss_pred CCchhHHHHHHHHHHHH---HHHHH------HHHHHhchhhhHHHHHHHHhhchh--h-hhhhhhcccchhhhhhhhhhh
Confidence 66666666655554321 11111 111123445555555543321111 0 111112222222222211 1
Q ss_pred HH----HcCCCCCHhhHHHHHHHHhccccHHHH----------HHHHHHHHHh-CCCCchhhHHHHHHHhhhcCChhhHH
Q 038936 251 LI----KSGIRPNAFTFAGVLNACADHAAEELG----------KQVHGYMTRI-GYDPYSFAASALVHMYSKCGNVENSK 315 (476)
Q Consensus 251 ~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a----------~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (476)
.. ..|..|+ .......+.+.....-. ..+.+.+... |.....-+.+--+.-+...|+..+|.
T Consensus 628 ~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ 704 (829)
T KOG2280|consen 628 SYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAE 704 (829)
T ss_pred hhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHH
Confidence 00 1122222 22223333333221111 1111111111 22233334444455556666666777
Q ss_pred HHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC
Q 038936 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395 (476)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 395 (476)
++-.+..-||-..|-.-+.++...+++++-+++-+.+. ++.-|..+..+|.+.|+.++|..++-+.- +
T Consensus 705 ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~--- 772 (829)
T KOG2280|consen 705 QLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---G--- 772 (829)
T ss_pred HHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---C---
Confidence 77666666776666666667777766666555443321 13445556666777777777766653322 1
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 396 TADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
+.-.+.+|.+.|++.+|.+.--+
T Consensus 773 ----l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 773 ----LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ----hHHHHHHHHHhccHHHHHHHHHH
Confidence 11355666666666666655433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.20 E-value=2e-05 Score=55.63 Aligned_cols=93 Identities=22% Similarity=0.260 Sum_probs=55.7
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcC
Q 038936 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHG 443 (476)
Q Consensus 366 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 443 (476)
.++..+...|++++|...++++.+. .+.+...+..++.++...|++++|.+.+++. ...| +...+..++..+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 3444555566666666666666542 2223345555666666666666666666653 2222 3345666666677777
Q ss_pred ChHHHHHHHHHHHHcCC
Q 038936 444 NLDLAKRAAEALFEIEP 460 (476)
Q Consensus 444 ~~~~A~~~~~~~~~~~p 460 (476)
++++|...++++++..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 77777777777777666
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.4e-06 Score=46.48 Aligned_cols=34 Identities=38% Similarity=0.757 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD 360 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 360 (476)
.+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688899999999999999999999998888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.4e-06 Score=55.77 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=62.5
Q ss_pred cCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCCC-cHHHHHHHHHHHHhcCChHHHHHHH
Q 038936 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP-DKFLWASLLGGCRIHGNLDLAKRAA 452 (476)
Q Consensus 374 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 452 (476)
.|+++.|+.+++++.+.....++...+..++.+|.+.|++++|..++++.+..| +......++.++...|++++|++.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 588999999999999864322345566678999999999999999998854344 3345556688889999999999999
Q ss_pred HHH
Q 038936 453 EAL 455 (476)
Q Consensus 453 ~~~ 455 (476)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 874
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00033 Score=60.59 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=23.3
Q ss_pred HHHHhhhc-CChhhHHHHHccCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 301 LVHMYSKC-GNVENSKKVFNGMPR-----PD----LVSWTSLIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 301 l~~~~~~~-~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
+...|... |++++|++.|++..+ .. ..++..+...+.+.|++++|+++|++...
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33344444 555555555554431 11 12333444445555555555555555544
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.3e-06 Score=44.98 Aligned_cols=33 Identities=30% Similarity=0.640 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 359 (476)
.+|+.++.+|.+.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0002 Score=61.67 Aligned_cols=136 Identities=15% Similarity=0.201 Sum_probs=104.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA-CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (476)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...+.. +...++.+.|..+|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888999999999998643 3345555555544 33467777899999999986 5667788999999
Q ss_pred HHHhcCChhhHHHHHhhC-CCCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 038936 406 LLARSGRFHEAEDVISKM-PMKPD----KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 465 (476)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--...|+.+....+.+++.+..|++...
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999995 32233 3489999998889999999999999999999875543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00055 Score=59.23 Aligned_cols=150 Identities=11% Similarity=-0.011 Sum_probs=77.0
Q ss_pred HhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhh---------------HHHHHH
Q 038936 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS---------------WTSLIA 334 (476)
Q Consensus 270 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~l~~ 334 (476)
+.-.|+.+.|.++-..+.+.. ..+......-..++...++.+.+...|++..+.++.. +..-..
T Consensus 179 l~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN 257 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGN 257 (486)
T ss_pred hhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhh
Confidence 344556666665555555443 1121111111123344556666666666665533322 122233
Q ss_pred HHHhcCChHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhc
Q 038936 335 GYAQNGMPDKALEYFELLLKS---GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT-ADHYACIVDLLARS 410 (476)
Q Consensus 335 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 410 (476)
-..+.|++..|.+.+.+.+.. +..|+...|.....+..+.|+..+|+.-.+.+.. +.+. ...+..-+.++...
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHH
Confidence 345667777777777776653 2334445566566666667777777666655552 2222 22233334455556
Q ss_pred CChhhHHHHHhhC
Q 038936 411 GRFHEAEDVISKM 423 (476)
Q Consensus 411 g~~~~A~~~~~~~ 423 (476)
++|++|.+-++++
T Consensus 335 e~~e~AV~d~~~a 347 (486)
T KOG0550|consen 335 EKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHH
Confidence 6667776666664
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.9e-06 Score=45.20 Aligned_cols=33 Identities=33% Similarity=0.751 Sum_probs=27.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 038936 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259 (476)
Q Consensus 227 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 259 (476)
+|+.++.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 578888888888888888888888888888776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.1e-05 Score=52.84 Aligned_cols=65 Identities=17% Similarity=0.270 Sum_probs=53.4
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCC
Q 038936 396 TADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHG-NLDLAKRAAEALFEIEP 460 (476)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 460 (476)
+...|..++..+...|++++|+..|+++ ...| +...|..++.++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456778888888888888888888885 4444 5668888999999999 79999999999999988
|
... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.2e-05 Score=46.84 Aligned_cols=43 Identities=23% Similarity=0.495 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 430 FLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 430 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
.+|..+..+|...|++++|++.|+++++.+|+|+.++..|+.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 3677889999999999999999999999999999999998753
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.8e-06 Score=44.21 Aligned_cols=33 Identities=21% Similarity=0.532 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038936 27 SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKP 59 (476)
Q Consensus 27 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 59 (476)
.+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.2e-06 Score=53.83 Aligned_cols=49 Identities=12% Similarity=0.338 Sum_probs=25.2
Q ss_pred ccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 373 HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 373 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
..|++++|++.|+++... .|.+...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555566655555543 2334444555555555555555555555554
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0017 Score=56.98 Aligned_cols=170 Identities=18% Similarity=0.158 Sum_probs=109.5
Q ss_pred hHHHHHHHhhhcCChhhHHHHHccCCCC-------ChhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCcHHHHHH
Q 038936 297 AASALVHMYSKCGNVENSKKVFNGMPRP-------DLVSWTSLIAGYAQ---NGMPDKALEYFELLLKSGTQPDHIVFVG 366 (476)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 366 (476)
+...++-.|....+++..+++.+.+..+ ....-....-++.+ .|+.++|+.++..+....-.+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3345555677777888888777777652 12222334555666 7888999999988666666778888887
Q ss_pred HHHHHhc---------cCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH----HHHH---hh-C------
Q 038936 367 VLTACTH---------AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA----EDVI---SK-M------ 423 (476)
Q Consensus 367 l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~---~~-~------ 423 (476)
+++.|-. ....++|+..|.+.-+ +.|+...-..++..+.-.|...+. .++- .. .
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 7776532 2246788888887764 345554434445555555542222 2222 11 1
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 038936 424 PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469 (476)
Q Consensus 424 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 469 (476)
....+-..+.+++.+..-.|++++|.+.++++.++.|+....-.++
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~ 345 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTL 345 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHH
Confidence 1223455667888889999999999999999999998765444333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.014 Score=54.43 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 038936 23 HPSPSIYSSLIQFCRQNRALEEGKKVHSHL 52 (476)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 52 (476)
.|.+..|..+.......-.++.|...|-+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 456666666666555555555555555443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0003 Score=52.00 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=66.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC-ChhhHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQ--PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY-TADHYACIV 404 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~ 404 (476)
++..++..+.+.|++++|.+.|+++.+.... .....+..+..++...|++++|...++.+....+..+ ....+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4556667777888888888888888765311 1123555677778888888888888888876432221 245577777
Q ss_pred HHHHhcCChhhHHHHHhhC
Q 038936 405 DLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~ 423 (476)
.++.+.|++++|.+.++++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHhCChHHHHHHHHHH
Confidence 8888888888888888875
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00016 Score=57.22 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHcCCCC
Q 038936 445 LDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 445 ~~~A~~~~~~~~~~~p~~ 462 (476)
+++|...++++++.+|++
T Consensus 136 ~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 136 FDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHHHHHHhCccc
Confidence 446777777888888865
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00014 Score=51.12 Aligned_cols=92 Identities=22% Similarity=0.228 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 038936 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408 (476)
Q Consensus 329 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 408 (476)
+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|.+.+++.... .+.+...+..++..+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 4556677778888888888888887753 233456666777788888888888888887753 3444457778888888
Q ss_pred hcCChhhHHHHHhhC
Q 038936 409 RSGRFHEAEDVISKM 423 (476)
Q Consensus 409 ~~g~~~~A~~~~~~~ 423 (476)
..|++++|...+.+.
T Consensus 80 ~~~~~~~a~~~~~~~ 94 (100)
T cd00189 80 KLGKYEEALEAYEKA 94 (100)
T ss_pred HHHhHHHHHHHHHHH
Confidence 888888888888764
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0063 Score=53.01 Aligned_cols=248 Identities=9% Similarity=-0.032 Sum_probs=140.7
Q ss_pred hhhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 038936 4 ILCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80 (476)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 80 (476)
.+.+..++.+|+..+..+. +.+..-|..-+..+...|+++++.--.+.-.+.... .+..+...-+++...++..+|
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHHH
Confidence 3556667777777777663 555566666666666777777776655554442110 122222333333333333333
Q ss_pred HHHHH---------------Hccc-----ccchHHHHH-HHHHHhcCCHHHHHHHHhcCCCCCcch-HHHHH--HHHHhc
Q 038936 81 QTLFD---------------EMQE-----RDVCSYNTM-ISGFTKGGSLEQARNLFDEMPQRDNFS-WTAMI--SGYVRY 136 (476)
Q Consensus 81 ~~~~~---------------~~~~-----~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~l~--~~~~~~ 136 (476)
.+.++ .+.. |....|..+ ...+...|+.++|.+.--.+.+-|+.. +..++ .++.-.
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYN 216 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccc
Confidence 33332 1111 111223222 334556788888877766666544432 33333 344456
Q ss_pred CChhHHHHHHHHHHhccCCCCCchH---HHHHHHH----------HHhhhhhhhHHHHHHHHHHcC---CCchHHHHHHH
Q 038936 137 NQPIEALDLYRMMQNFENSVSNKFT---LSSVLSA----------VSAIQCLRLGKEIHGYIMRTG---FDSDEVVWSAL 200 (476)
Q Consensus 137 ~~~~~a~~~~~~~~~~~~~~~~~~~---~~~ll~~----------~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l 200 (476)
++.+.+...|++... ..|+... ....... ..+.|.+..|.+.|.+.+... ..++...|...
T Consensus 217 ~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 217 DNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred cchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 778888888888776 3344332 2222222 235667788888888777543 34556667777
Q ss_pred HHHHHcCCCHHHHHHHHHhhcccchhh---HHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038936 201 SDMYGKCGSINEARQIFDKMVDRDVVS---WTAMIGRYFQEGRREEGFALFSELIKSG 255 (476)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 255 (476)
.....+.|+.++|+.--+...+-|..- +..-..++...++|++|.+-|++..+..
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777777888888888777776665442 2233455666677888887777776643
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.7e-05 Score=50.95 Aligned_cols=67 Identities=21% Similarity=0.343 Sum_probs=54.9
Q ss_pred HHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 038936 404 VDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 404 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
..+|.+.+++++|.++++.+ ...| ++..|...+.++...|++++|.+.++++++..|+++......+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 45678889999999999886 4445 5667888888899999999999999999999998877665544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00067 Score=51.18 Aligned_cols=97 Identities=7% Similarity=-0.039 Sum_probs=64.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHH
Q 038936 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403 (476)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 403 (476)
.+....-.+..-+...|++++|..+|+-+.... +-+..-|..|..++-..|++++|+..|..+..- -+.++..+..+
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--~~ddp~~~~~a 109 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--KIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHH
Confidence 334444445555667777777777777777643 223445566667777777778887777777753 24456667777
Q ss_pred HHHHHhcCChhhHHHHHhhC
Q 038936 404 VDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 404 ~~~~~~~g~~~~A~~~~~~~ 423 (476)
+.++...|+.+.|.+-|+.+
T Consensus 110 g~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 77777778877777777764
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00025 Score=59.89 Aligned_cols=102 Identities=11% Similarity=0.056 Sum_probs=68.2
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC----cHHHHHHHHH
Q 038936 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY-TADHYACIVDLLARSGRFHEAEDVISKM-PMKP----DKFLWASLLG 437 (476)
Q Consensus 364 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~ 437 (476)
|........+.|++++|+..|+.+...++-.+ .+..+..++.+|...|++++|...|+.+ ...| ....+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44333333556777777777777776532111 1345667777778888888888777775 2222 2345566677
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchh
Q 038936 438 GCRIHGNLDLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 438 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 465 (476)
.+...|++++|...|+++++..|++..+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 7778899999999999999999987644
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.015 Score=50.80 Aligned_cols=79 Identities=11% Similarity=0.093 Sum_probs=40.4
Q ss_pred HHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHH
Q 038936 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280 (476)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 280 (476)
+.-+...|+...|.++-.+..-|+-.-|...+.+++..++|++-..+-. . +-++..|..++.+|...|+..+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~----s--kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAK----S--KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHh----C--CCCCCChHHHHHHHHHCCCHHHHH
Confidence 4444455555555555555555555555555566666665555443321 1 122355555555555555555555
Q ss_pred HHHHH
Q 038936 281 QVHGY 285 (476)
Q Consensus 281 ~~~~~ 285 (476)
.+...
T Consensus 258 ~yI~k 262 (319)
T PF04840_consen 258 KYIPK 262 (319)
T ss_pred HHHHh
Confidence 54443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0011 Score=55.28 Aligned_cols=114 Identities=13% Similarity=0.091 Sum_probs=89.1
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---ChhhHHHHHhhC-
Q 038936 348 YFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG---RFHEAEDVISKM- 423 (476)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~- 423 (476)
-++.-+..+ +-|...|..|...|...|+.+.|...|.++.+- .++++..+..++.++..+. ...++..+|+++
T Consensus 144 ~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 144 RLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 333334433 457789999999999999999999999999974 4556677888888766443 367888999996
Q ss_pred CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 038936 424 PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 424 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 464 (476)
...| |+.....+...+...|++.+|...++.+++..|.+..
T Consensus 221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 4444 6677788888899999999999999999998887654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.016 Score=50.60 Aligned_cols=111 Identities=18% Similarity=0.234 Sum_probs=78.7
Q ss_pred hHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 038936 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376 (476)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 376 (476)
+.+..+.-+...|+...|.++-.+..-|+-..|...+.+++..++|++-..+... +-++.-|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3445556666778888888888777778888888888888888888877665432 2234677788888888888
Q ss_pred hhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCC
Q 038936 377 VDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424 (476)
Q Consensus 377 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 424 (476)
..+|..++.++ + +..-+..|.++|++.+|.+.--+.+
T Consensus 253 ~~eA~~yI~k~------~-----~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 253 KKEASKYIPKI------P-----DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHHHhC------C-----hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 88887776541 1 2445677788888888877655544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.3e-05 Score=40.97 Aligned_cols=30 Identities=37% Similarity=0.675 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGT 357 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 357 (476)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677788888888888888888888877653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00049 Score=61.56 Aligned_cols=93 Identities=10% Similarity=0.045 Sum_probs=66.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 038936 333 IAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412 (476)
Q Consensus 333 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 412 (476)
...+...|++++|+..|+++++.. +.+...|..+..++...|++++|+..+++++.. .+.+...|..++.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCC
Confidence 345667778888888888887754 234556667777778888888888888888753 23456667777888888888
Q ss_pred hhhHHHHHhhC-CCCCc
Q 038936 413 FHEAEDVISKM-PMKPD 428 (476)
Q Consensus 413 ~~~A~~~~~~~-~~~p~ 428 (476)
+++|+..|+++ ...|+
T Consensus 86 ~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 86 YQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 88888888775 44444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00086 Score=53.25 Aligned_cols=86 Identities=17% Similarity=0.145 Sum_probs=62.3
Q ss_pred hhhHHHHHHHhhhcCChhhHHHHHccCCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 038936 295 SFAASALVHMYSKCGNVENSKKVFNGMPR--PD----LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368 (476)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 368 (476)
...+..+...+...|++++|...|++..+ |+ ...+..+...+.+.|++++|+..+++..+.. +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44567777888888999999998887763 22 3567778888899999999999999888853 22445566667
Q ss_pred HHHhccCchhhHH
Q 038936 369 TACTHAGLVDKGL 381 (476)
Q Consensus 369 ~~~~~~~~~~~a~ 381 (476)
.++...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 7777777644433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.044 Score=52.90 Aligned_cols=182 Identities=14% Similarity=0.137 Sum_probs=124.9
Q ss_pred hhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH--
Q 038936 5 LCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD-- 79 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-- 79 (476)
+.+.|+.++|..+++... ..|..+...+-.+|.+.+..++|..+|+..... .|+......+..+|.+.+++.+
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999998874 567888889999999999999999999999885 4677788888889999887765
Q ss_pred --HHHHHHHcccccchHHHHHHHHHHhcC----------CHHHHHHHHhcCCCCCc--ch---HHHHHHHHHhcCChhHH
Q 038936 80 --AQTLFDEMQERDVCSYNTMISGFTKGG----------SLEQARNLFDEMPQRDN--FS---WTAMISGYVRYNQPIEA 142 (476)
Q Consensus 80 --A~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~a~~~~~~~~~~~~--~~---~~~l~~~~~~~~~~~~a 142 (476)
|.+++....+ ++..+=++++.....- -..-|.+.++.+.+.+. .+ .......+...|.+++|
T Consensus 131 kaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea 209 (932)
T KOG2053|consen 131 KAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA 209 (932)
T ss_pred HHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence 5556664433 3344444444443321 12335555555554431 11 11223445577899999
Q ss_pred HHHHH-HHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCC
Q 038936 143 LDLYR-MMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGF 190 (476)
Q Consensus 143 ~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 190 (476)
++++. ...+ .-..-+...-+.-+..+...+.+.+..++-.++...|.
T Consensus 210 l~~l~~~la~-~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 210 LEFLAITLAE-KLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHH-hccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 99994 3332 33333444445667777888899999999988888873
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0013 Score=47.88 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=61.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHH
Q 038936 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDH--IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY-TADHYACIVDLLA 408 (476)
Q Consensus 332 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 408 (476)
+..++-..|+.++|+.+|++....|..... ..+..+...+...|++++|..++++....++-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455677788888888888888887765442 3566677778888888888888888876532111 2223333455677
Q ss_pred hcCChhhHHHHHhh
Q 038936 409 RSGRFHEAEDVISK 422 (476)
Q Consensus 409 ~~g~~~~A~~~~~~ 422 (476)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77888887776654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0022 Score=53.84 Aligned_cols=65 Identities=17% Similarity=0.050 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH---HHHHHHHHhcCChHHHHHHHHHccc
Q 038936 24 PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFIS---NCLLDMYAKCGNISDAQTLFDEMQE 89 (476)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~ 89 (476)
.++..+-.....+...|++++|...|+.+...-... .... -.+..++.+.+++++|...++...+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 97 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345555555666677888888888888887753221 2222 3455667788888888888888765
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0026 Score=48.83 Aligned_cols=129 Identities=12% Similarity=0.047 Sum_probs=89.1
Q ss_pred CCCchhhHHHHHHHhhhcCChhhHHHHHccCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CcHHHHH
Q 038936 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMPR----PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-PDHIVFV 365 (476)
Q Consensus 291 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 365 (476)
..|+...-..|.......|+..+|...|++... .|......+.++....+++..|...++++.+.+.. -++.+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 356666666777788888888888888877664 56667777777777888888888888887765310 0122344
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 366 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
.+.+.+...|.+.+|...|+.+.. ..|+...-......+.++|+.++|..-+..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 566777778888888888877774 366666666677777788877776654444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.027 Score=49.86 Aligned_cols=132 Identities=14% Similarity=0.128 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhH-HHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSG-TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY-ACIV 404 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~ 404 (476)
.+|...+..-.+..-.+.|..+|-+..+.| +.++...++.++..+ ..|+..-|..+|+--... -||...| ....
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~---f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK---FPDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh---CCCchHHHHHHH
Confidence 456677777778888899999999999988 567777888887754 468889999999877754 3444444 5667
Q ss_pred HHHHhcCChhhHHHHHhhC--CCCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 405 DLLARSGRFHEAEDVISKM--PMKPD--KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
..+.+-++-+.|..+|+.. .+..+ ...|..++.--..-|+...+..+-+++.++.|+.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 7888999999999999965 22222 4588888887788899999999999999999875
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00063 Score=53.82 Aligned_cols=95 Identities=14% Similarity=0.162 Sum_probs=63.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHH
Q 038936 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP--DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403 (476)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 403 (476)
...|..++..+...|++++|+..|++.......| ...++..+...+...|++++|+..++++... .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 3456667777778888888888888887653222 1246777778888888888888888888753 23334455566
Q ss_pred HHHHH-------hcCChhhHHHHHhh
Q 038936 404 VDLLA-------RSGRFHEAEDVISK 422 (476)
Q Consensus 404 ~~~~~-------~~g~~~~A~~~~~~ 422 (476)
+.++. +.|++++|...+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 66665 66776655555443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00092 Score=60.02 Aligned_cols=119 Identities=12% Similarity=0.063 Sum_probs=72.9
Q ss_pred CCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHh--CCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC----CChhhH
Q 038936 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI--GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR----PDLVSW 329 (476)
Q Consensus 256 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~ 329 (476)
.+.+......+++.+....+.+.+..++...... ....-+.+..++++.|...|..+.++.+++.=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445556666666666666666666666665544 1222233445666777777777777666665443 677777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 038936 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374 (476)
Q Consensus 330 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (476)
|.++..+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777766666555656655555554443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00065 Score=60.96 Aligned_cols=120 Identities=12% Similarity=0.112 Sum_probs=89.6
Q ss_pred CCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc------chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhh
Q 038936 189 GFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR------DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262 (476)
Q Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 262 (476)
+.+.+......+++.+....+.+.+..++-+.... -+.+..++++.|.+.|..+.++.++..=..-|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33555556666777777777777787777776442 123556888888888888888888888888888888888
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhc
Q 038936 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308 (476)
Q Consensus 263 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (476)
++.+|..+.+.|++..|.++...|...+...++.++..-+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888777666666665555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0034 Score=51.11 Aligned_cols=135 Identities=13% Similarity=0.101 Sum_probs=95.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhc----CCCCChhhHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH----GLTYTADHYACI 403 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l 403 (476)
+-+.++..+.-.|.+.-.+..+.+.++...+.++.....+++.-.+.||.+.|...|++..+.. +......+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445666666777888888888888887666677777788888888888888888888665432 222333333444
Q ss_pred HHHHHhcCChhhHHHHHhhCC--CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 404 VDLLARSGRFHEAEDVISKMP--MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 404 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
...+.-+.++.+|...++++. .+.++...+.-..+....|+..+|++.++.+.+..|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 455667778888888888863 23356666776666777788888998888888888864
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0028 Score=59.45 Aligned_cols=35 Identities=3% Similarity=-0.074 Sum_probs=20.3
Q ss_pred CCCCHhhHHHHHHHHhc-----cccHHHHHHHHHHHHHhC
Q 038936 256 IRPNAFTFAGVLNACAD-----HAAEELGKQVHGYMTRIG 290 (476)
Q Consensus 256 ~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~ 290 (476)
.+.+...|...+.+... .++.+.|..+|++..+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld 372 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE 372 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence 34555666666665332 223566777777776663
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00021 Score=46.53 Aligned_cols=64 Identities=23% Similarity=0.335 Sum_probs=39.7
Q ss_pred HhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 038936 408 ARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMAN 471 (476)
Q Consensus 408 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 471 (476)
.+.|++++|++.|+++ ...| +...+..++.+|.+.|++++|.+.++++...+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3566677777777665 3333 55566666666777777777777777777777766555554443
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.67 E-value=6.3e-05 Score=39.87 Aligned_cols=29 Identities=28% Similarity=0.637 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038936 227 SWTAMIGRYFQEGRREEGFALFSELIKSG 255 (476)
Q Consensus 227 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 255 (476)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45566666666666666666666665554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.032 Score=48.45 Aligned_cols=278 Identities=13% Similarity=0.093 Sum_probs=160.0
Q ss_pred hhhhhhhHHHHHHHHH---HcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc-chh--hHHHHHHHHHhcCChhHH
Q 038936 171 AIQCLRLGKEIHGYIM---RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-DVV--SWTAMIGRYFQEGRREEG 244 (476)
Q Consensus 171 ~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~--~~~~l~~~~~~~~~~~~a 244 (476)
..|+-..+.++-.+.. ....+|=++... ..+-.-.|+++.|.+-|+.|... ... -...|.-...+.|+.+.|
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLe--AQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLE--AQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHH--HHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHH
Confidence 4556666666655433 222223222211 23334468888998888888652 211 122333344567888888
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhC-CCCchhhH--HHHHHHh---hhcCChhhHHHHH
Q 038936 245 FALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG-YDPYSFAA--SALVHMY---SKCGNVENSKKVF 318 (476)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~--~~l~~~~---~~~~~~~~a~~~~ 318 (476)
..+-+..-..- +.-.......+...|..|+++.|+++++.-.... +.++..-- ..|+.+- .-.-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 77777765542 3334667778888888899999988887765542 23332211 1121111 1112344444444
Q ss_pred ccCCC--CChhh-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC
Q 038936 319 NGMPR--PDLVS-WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395 (476)
Q Consensus 319 ~~~~~--~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 395 (476)
.+..+ ||... -..-..++.+.|+..++-.+++.+-+....|+.. . +....+.|+ .++.-+++...--.+.|
T Consensus 253 ~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~--lY~~ar~gd--ta~dRlkRa~~L~slk~ 326 (531)
T COG3898 253 LEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--L--LYVRARSGD--TALDRLKRAKKLESLKP 326 (531)
T ss_pred HHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--H--HHHHhcCCC--cHHHHHHHHHHHHhcCc
Confidence 44433 44332 2233456888888888888888888865444432 1 222344554 33444444433223444
Q ss_pred -ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 038936 396 -TADHYACIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLLGGCRIH-GNLDLAKRAAEALFE 457 (476)
Q Consensus 396 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 457 (476)
+.+....+.++-...|++..|..--+.. ...|....|.-+...-... ||-.++.+.+-++++
T Consensus 327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 327 NNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 4455666777777888888877766664 5567777777776665444 888888888888776
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0051 Score=51.65 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=31.5
Q ss_pred HHHHHHcCCCHHHHHHHHHhhcccchh------hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038936 200 LSDMYGKCGSINEARQIFDKMVDRDVV------SWTAMIGRYFQEGRREEGFALFSELIKS 254 (476)
Q Consensus 200 l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 254 (476)
....+...|++++|.+.|+.+....+. ..-.++.++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344445566777777777666442211 1223455666677777777777766664
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0012 Score=46.14 Aligned_cols=79 Identities=10% Similarity=0.071 Sum_probs=65.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhccCC-CCCchHHHHHHHHHHhhh--------hhhhHHHHHHHHHHcCCCchHHHH
Q 038936 127 TAMISGYVRYNQPIEALDLYRMMQNFENS-VSNKFTLSSVLSAVSAIQ--------CLRLGKEIHGYIMRTGFDSDEVVW 197 (476)
Q Consensus 127 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 197 (476)
...|..+...+++.....+|+.+++ .++ .|+..+|+.++.+.++.. ..-..+.+|+.|+..+++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkR-N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKR-NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 3455666777999999999999998 777 999999999999887553 345577889999999999999999
Q ss_pred HHHHHHHHc
Q 038936 198 SALSDMYGK 206 (476)
Q Consensus 198 ~~l~~~~~~ 206 (476)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0013 Score=45.97 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=63.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHhhHHHHHHHHhccc--------cHHHHHHHHHHHHHhCCCCchhhHH
Q 038936 229 TAMIGRYFQEGRREEGFALFSELIKSGI-RPNAFTFAGVLNACADHA--------AEELGKQVHGYMTRIGYDPYSFAAS 299 (476)
Q Consensus 229 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 299 (476)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-....+++.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445666667999999999999999999 899999999998876532 3456777888898888999999999
Q ss_pred HHHHHhhh
Q 038936 300 ALVHMYSK 307 (476)
Q Consensus 300 ~l~~~~~~ 307 (476)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00095 Score=55.46 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=67.5
Q ss_pred HHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCchh
Q 038936 303 HMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH-IVFVGVLTACTHAGLVD 378 (476)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 378 (476)
.-+.+.+++++|+..|.+.++ .|.+.|..-..+|.+.|.++.|++-.+..+. +.|.. .+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence 345667778888888877765 3566677777778888888888887777777 33443 47777888888888888
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHH
Q 038936 379 KGLQYFHSIKEKHGLTYTADHYAC 402 (476)
Q Consensus 379 ~a~~~~~~~~~~~~~~~~~~~~~~ 402 (476)
+|++.|++.++ +.|+-.+|..
T Consensus 167 ~A~~aykKaLe---ldP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALE---LDPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhc---cCCCcHHHHH
Confidence 88888877773 5666655543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.003 Score=54.51 Aligned_cols=124 Identities=14% Similarity=0.191 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHccc---ccchHHHHHHHHH
Q 038936 27 SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK-CGNISDAQTLFDEMQE---RDVCSYNTMISGF 102 (476)
Q Consensus 27 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 102 (476)
.+|-.+++...+.+..+.|..+|.+..+.+ ..+...|......-.. .++.+.|.++|+...+ .+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 468888999999999999999999998653 2244555555444334 5667779999999875 5677888888999
Q ss_pred HhcCCHHHHHHHHhcCCCC------CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038936 103 TKGGSLEQARNLFDEMPQR------DNFSWTAMISGYVRYNQPIEALDLYRMMQN 151 (476)
Q Consensus 103 ~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 151 (476)
.+.|+.+.|..+|++.... ....|...+..=.+.|+.+.+.++.+.+.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999988763 224688888888888888888888888876
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.023 Score=43.89 Aligned_cols=130 Identities=9% Similarity=-0.013 Sum_probs=78.2
Q ss_pred CCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC-----CChhhHHH
Q 038936 257 RPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-----PDLVSWTS 331 (476)
Q Consensus 257 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 331 (476)
.|+...-..+..++...|+..+|...|++...--+..|......+.++....+++..|...++++.+ ..+.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4454444555556666666666666666655544455555555666666666666666666665543 12334445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 038936 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 332 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 388 (476)
+...+...|.+..|..-|+..... -|+...-......+.++|+.+++..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 667788888888888888888885 4554443334445567777666655444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.032 Score=51.70 Aligned_cols=67 Identities=9% Similarity=0.009 Sum_probs=37.8
Q ss_pred hhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHH
Q 038936 311 VENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386 (476)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 386 (476)
.+-+.++-+++...+..+...+..-+.+...+.-|-++|.+|-+. ..++......+++++|..+-++
T Consensus 732 ~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 732 VDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEK 798 (1081)
T ss_pred HHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhh
Confidence 333344444444444455555555555666667777777766432 1345556677777777766543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00022 Score=47.87 Aligned_cols=60 Identities=22% Similarity=0.224 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHhhC-------C-CCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038936 399 HYACIVDLLARSGRFHEAEDVISKM-------P-MKPD-KFLWASLLGGCRIHGNLDLAKRAAEALFEI 458 (476)
Q Consensus 399 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 458 (476)
++..++.+|...|++++|+..|+++ + ..|+ ..++..++.++...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555666666666666666666553 1 1133 446778888888888888888888888764
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0022 Score=55.62 Aligned_cols=130 Identities=14% Similarity=0.058 Sum_probs=85.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH----HcCCC-CcHHHHHHHHHHHhccCchhhHHHHHHHHHH----hcCCCCChh
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLL----KSGTQ-PDHIVFVGVLTACTHAGLVDKGLQYFHSIKE----KHGLTYTAD 398 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~ 398 (476)
.|..|...|.-.|+++.|+..-+.=+ +-|-+ .....+..+..++.-.|+++.|.+.|+.... -..-.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45556666666778887776544322 22211 1223566777888888888888888876542 111122344
Q ss_pred hHHHHHHHHHhcCChhhHHHHHhhC-------C-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 399 HYACIVDLLARSGRFHEAEDVISKM-------P-MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 399 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
+..+|+..|.-..++++|+.++.+- . ..-....+.+++.++...|..++|+...+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667888888888888888887663 1 112455777888888888999998888777766
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0027 Score=55.17 Aligned_cols=269 Identities=10% Similarity=0.008 Sum_probs=136.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHcc-------c--ccchHHHHHHH
Q 038936 34 QFCRQNRALEEGKKVHSHLKSSGFKPGV----FISNCLLDMYAKCGNISDAQTLFDEMQ-------E--RDVCSYNTMIS 100 (476)
Q Consensus 34 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~~~~~~~~l~~ 100 (476)
.-+++.|+......+|+..++.|.. |. .+|..|..+|.-.+++.+|++.-..=. . ....+...|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578899999999999999998854 43 456667777777888888887643311 1 12234444555
Q ss_pred HHHhcCCHHHHHHHHhcCCC-------C--CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHh
Q 038936 101 GFTKGGSLEQARNLFDEMPQ-------R--DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA 171 (476)
Q Consensus 101 ~~~~~g~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 171 (476)
.+--.|.+++|.-.-.+-.. + ....+..+...|...|+.-.... .+..+..++..
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~-----pee~g~f~~ev----------- 167 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA-----PEEKGAFNAEV----------- 167 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC-----hhhcccccHHH-----------
Confidence 55666777777654333221 1 22334445555544432110000 00001111100
Q ss_pred hhhhhhHHHHHHHH----HHcCCC-chHHHHHHHHHHHHcCCCHHHHHHHHHhhcc---------cchhhHHHHHHHHHh
Q 038936 172 IQCLRLGKEIHGYI----MRTGFD-SDEVVWSALSDMYGKCGSINEARQIFDKMVD---------RDVVSWTAMIGRYFQ 237 (476)
Q Consensus 172 ~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~ 237 (476)
...++.|.++|.+- .+.|-. ..-..|..|.+.|.-.|+++.|+..-+.-.. ..-..+..+..+++-
T Consensus 168 ~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 168 TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 01122222222221 111100 1123455555556666677777665543311 112345666677777
Q ss_pred cCChhHHHHHHHHHHH----cC-CCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHh----C-CCCchhhHHHHHHHhhh
Q 038936 238 EGRREEGFALFSELIK----SG-IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI----G-YDPYSFAASALVHMYSK 307 (476)
Q Consensus 238 ~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~ 307 (476)
.|+++.|.+.|+.... .| -.....+...+.+.|.-..+++.|+.++.+-... + ..-....+.+|..+|..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 7777777777665432 22 1223344555666666666677777666543222 1 11223455566667776
Q ss_pred cCChhhHHHHHc
Q 038936 308 CGNVENSKKVFN 319 (476)
Q Consensus 308 ~~~~~~a~~~~~ 319 (476)
.|..++|+.+.+
T Consensus 328 lg~h~kAl~fae 339 (639)
T KOG1130|consen 328 LGEHRKALYFAE 339 (639)
T ss_pred hhhHHHHHHHHH
Confidence 776666665544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0011 Score=43.25 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=45.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC-chhhHHHHHHHHHH
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG-LVDKGLQYFHSIKE 389 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 389 (476)
++..|..+...+...|++++|+..|++.++.. +.+...+..+..++...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566777777777777777777777777754 234556677777777777 67777777777764
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.021 Score=52.89 Aligned_cols=88 Identities=11% Similarity=0.143 Sum_probs=60.2
Q ss_pred HhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CChh----------
Q 038936 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLV---------- 327 (476)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~---------- 327 (476)
..+...+...+-+...+..|.++|..|-+. ..+++++...++|++|..+-++..+ +++.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 344444555555666677777777776544 3577788888888888888887775 3332
Q ss_pred -hHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 328 -SWTSLIAGYAQNGMPDKALEYFELLLKSG 356 (476)
Q Consensus 328 -~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 356 (476)
-+...-++|.+.|+..+|..+++++....
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 23334567888999999999999886653
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00072 Score=43.42 Aligned_cols=57 Identities=23% Similarity=0.235 Sum_probs=34.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 333 IAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 333 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
...+.+.|++++|+..|+++++.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445566666666666666666653 224455556666666666666666666666543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0041 Score=45.26 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=30.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhccccHHHHHHHHHHHHHh
Q 038936 232 IGRYFQEGRREEGFALFSELIKSGIRPNA--FTFAGVLNACADHAAEELGKQVHGYMTRI 289 (476)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 289 (476)
..++-..|+.++|+.+|++....|..... ..+..+...+...|++++|..+++.....
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455566666666666666665543331 23333444455556666666666555443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0022 Score=54.22 Aligned_cols=101 Identities=19% Similarity=0.167 Sum_probs=73.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC-ChhhHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH----IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY-TADHYAC 402 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 402 (476)
.|...+..+.+.|++++|+..|+.+++.. |+. ..+..++.+|...|++++|...|+.+...+...| ....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 45554544566788999999999988854 433 4667788888999999999999999987543222 3555666
Q ss_pred HHHHHHhcCChhhHHHHHhhC-CCCCcHH
Q 038936 403 IVDLLARSGRFHEAEDVISKM-PMKPDKF 430 (476)
Q Consensus 403 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 430 (476)
++.++...|+.++|.++++++ ...|+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 788888899999999999886 3445433
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0023 Score=52.89 Aligned_cols=97 Identities=20% Similarity=0.216 Sum_probs=62.7
Q ss_pred HhccCchhhHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCChhhHHHHHhhC----CCCC-cHHHHHHHHHHHHhcCC
Q 038936 371 CTHAGLVDKGLQYFHSIKEKHGLT-YTADHYACIVDLLARSGRFHEAEDVISKM----PMKP-DKFLWASLLGGCRIHGN 444 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~ 444 (476)
+.+.|++..|.+.|...+..+.-. -....+..|++++...|++++|..+|..+ +..| -+..+..++.+..+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 445566777777777776542211 12344566777777777777777777664 2223 23466667777777888
Q ss_pred hHHHHHHHHHHHHcCCCCchhHH
Q 038936 445 LDLAKRAAEALFEIEPENPATYV 467 (476)
Q Consensus 445 ~~~A~~~~~~~~~~~p~~~~~~~ 467 (476)
.++|...|+++++..|+.+.+-.
T Consensus 231 ~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 231 TDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHH
Confidence 88888888888888887765544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.12 Score=48.64 Aligned_cols=361 Identities=13% Similarity=0.058 Sum_probs=189.2
Q ss_pred hHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CcchHHHH----------HHHHHhcCChhHHHHH
Q 038936 77 ISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR-DNFSWTAM----------ISGYVRYNQPIEALDL 145 (476)
Q Consensus 77 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l----------~~~~~~~~~~~~a~~~ 145 (476)
.++|.+..+. .|.+..|..+.......-.++.|...|-+...- .+....-| ...-.--|++++|.++
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 4455555444 466778888888877777777777777665531 11110000 1112234888888888
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCC----chHHHHHHHHHHHHcCCCHHHHHHHHHhhc
Q 038936 146 YRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFD----SDEVVWSALSDMYGKCGSINEARQIFDKMV 221 (476)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 221 (476)
|-++-+ -...+....+.|++-.+.++++. -|-. .-...++.+...+.....|++|.+.|..-.
T Consensus 757 yld~dr----------rDLAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 757 YLDADR----------RDLAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hhccch----------hhhhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 877754 12334445566676666655532 1111 123467777777777778888877776543
Q ss_pred ccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHH
Q 038936 222 DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301 (476)
Q Consensus 222 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 301 (476)
.. ...+.++.+..++++-..+-.. ++.+....-.+...+.+.|.-++|.+.+-+. + .| ...
T Consensus 824 ~~-----e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaA 884 (1189)
T KOG2041|consen 824 DT-----ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAA 884 (1189)
T ss_pred ch-----HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHH
Confidence 21 2235555555555554444333 2445555666677777778777777665332 2 11 134
Q ss_pred HHHhhhcCChhhHHHHHccCCCCChhhHHH--------------HHHHHHhcCChHHHHHHHHHHHHc----CCCCcHHH
Q 038936 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTS--------------LIAGYAQNGMPDKALEYFELLLKS----GTQPDHIV 363 (476)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~ 363 (476)
+..+...++|.+|.++-+...-|.+.+.-+ -|..+.+.|+.-.|.+++.+|.+. +.+|-..-
T Consensus 885 v~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~K 964 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLK 964 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHH
Confidence 556677777888887777666544433221 233345556665666666666442 33332211
Q ss_pred HHHHHHHH---------------hccCchhhHHHHHHHHHHhcC------C--CCChhhHHHHHHHHHhcCChhhHHHHH
Q 038936 364 FVGVLTAC---------------THAGLVDKGLQYFHSIKEKHG------L--TYTADHYACIVDLLARSGRFHEAEDVI 420 (476)
Q Consensus 364 ~~~l~~~~---------------~~~~~~~~a~~~~~~~~~~~~------~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 420 (476)
-..++.+. ...|..++|..+++...-... . -.....+..+++--...|..+.|++.-
T Consensus 965 klYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Ta 1044 (1189)
T KOG2041|consen 965 KLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTA 1044 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 11111111 123444555544333221100 0 011122233444455667777777654
Q ss_pred hhCC----CCCcHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 038936 421 SKMP----MKPDKFLWASLLGGCRIH---GNLDLAKRAAEALFEIEPENPATYVTMAN 471 (476)
Q Consensus 421 ~~~~----~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 471 (476)
-.++ .-|....|..+..+-+.. |--.+|.--++..-++......-|..|+.
T Consensus 1045 l~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a~kq~ye~La~ 1102 (1189)
T KOG2041|consen 1045 LILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDAEKQEYENLAF 1102 (1189)
T ss_pred hhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHHHHHHHHHHHH
Confidence 4442 224444555444433322 55666666666655565555556666653
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.011 Score=48.30 Aligned_cols=131 Identities=9% Similarity=0.049 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHH-----
Q 038936 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA----- 300 (476)
Q Consensus 226 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 300 (476)
...+.++......|.+.-....+++.++...+.++.....++....+.||.+.|...++...+..-..+....+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345667777777888888899999998877666778888888888899999999999997776543443333333
Q ss_pred HHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 301 LVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356 (476)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 356 (476)
....|.-.+++..|...+.++.. .++...|.-.-+..-.|+...|++.++.|...-
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 33446666778888888877775 344455555555666778888888888888753
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.01 Score=44.05 Aligned_cols=117 Identities=15% Similarity=0.039 Sum_probs=59.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 038936 333 IAGYAQNGMPDKALEYFELLLKSGTQ--PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410 (476)
Q Consensus 333 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 410 (476)
.....+.|++++|++.|+.+...-.. -....-..++.+|.+.+++++|...+++.++.+...|++ -|.....++..-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence 34455666677777766666654211 112344456666666677777776666666554443432 122222232222
Q ss_pred CChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 038936 411 GRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 411 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 465 (476)
...+....-+- ..+ ...+....|...|++.++..|++..+
T Consensus 96 ~~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 96 EQDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 11111111111 111 11123568899999999999987543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0043 Score=54.09 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHhhC-C-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 038936 400 YACIVDLLARSGRFHEAEDVISKM-P-MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 400 ~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
+..++-++.+.+++.+|++.-.+. . .++|+...-.-+.++...|+++.|+..|+++++++|+|..+...|.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~ 332 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELI 332 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 344444455555555555544443 2 1223444444444555555555555555555555555544444443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.02 Score=46.78 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=25.4
Q ss_pred hhhcCCHHHHHHHHHhcC------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038936 5 LCNQRRLKEALQILHQIS------HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSS 55 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 55 (476)
+...|++.+|++.|+.+. +--+.+.-.++.++.+.|+++.|...++..++.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345566666666666552 112223334445555666666666666665553
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.18 Score=46.67 Aligned_cols=178 Identities=13% Similarity=0.100 Sum_probs=113.3
Q ss_pred chhhHHHHHHHhhhcCChhhHHHHHccCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 038936 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDL---VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370 (476)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (476)
...+|...+.--...|+.+.+..+|+.+.-|-. ..|-..+.-....|+.+-|..++....+-.++-.+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 445677777777888888888888888776532 34555555555558888888777776665433333322222223
Q ss_pred HhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH---HHHhhC-CCCCcHHH----HHHHHHH-HHh
Q 038936 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE---DVISKM-PMKPDKFL----WASLLGG-CRI 441 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~----~~~l~~~-~~~ 441 (476)
+...|+++.|..+++.+.++ .+--...-..-+....+.|..+.+. .++... +.+-+... +....+- +.-
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--YPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--CCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 45678999999999999876 3223333344455667888888877 444443 22222221 2222221 334
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 442 HGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 442 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
.++.+.|..++.++.+..|++...|..+..+.
T Consensus 454 ~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 454 REDADLARIILLEANDILPDCKVLYLELIRFE 485 (577)
T ss_pred hcCHHHHHHHHHHhhhcCCccHHHHHHHHHHH
Confidence 58899999999999999999988888777654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.14 Score=44.76 Aligned_cols=130 Identities=14% Similarity=0.079 Sum_probs=80.0
Q ss_pred HHHHHHHHH--hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH--HhcCChHHHHHHHHHccc-ccch--HHHHHHHH
Q 038936 29 YSSLIQFCR--QNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMY--AKCGNISDAQTLFDEMQE-RDVC--SYNTMISG 101 (476)
Q Consensus 29 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~-~~~~--~~~~l~~~ 101 (476)
|.+|-.++. -.|+-..|.+.-.+..+. +.-|......++.+- .-.|+++.|.+-|+.|.. |... -...|.-.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyle 163 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLE 163 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHH
Confidence 444444443 346666676665554332 233555555555433 346888888888888875 3221 12233333
Q ss_pred HHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCc
Q 038936 102 FTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNK 159 (476)
Q Consensus 102 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 159 (476)
--+.|+.+.|...-+..-.. -+..+.+.+...+..|+|+.|+++++.-....-+.++.
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ 224 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDV 224 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh
Confidence 45678888888877766543 34567788888888888888888888777644444544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.23 Score=47.27 Aligned_cols=321 Identities=12% Similarity=0.074 Sum_probs=181.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHccc--ccchHHHHHHHHHHhc
Q 038936 31 SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG---NISDAQTLFDEMQE--RDVCSYNTMISGFTKG 105 (476)
Q Consensus 31 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~ 105 (476)
.+++-+...+.+..|.++-..+...-... ...|......+.+.. +-+.+..+-+++.. ....+|..+..-...+
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 35666777788888888877764432222 567777777777663 22333344444444 3456788888888899
Q ss_pred CCHHHHHHHHhcCCCC--------CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhh
Q 038936 106 GSLEQARNLFDEMPQR--------DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177 (476)
Q Consensus 106 g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 177 (476)
|+++-|..+++.=+.. +..-+..-+.-....|+.+-...++..+.+. .+...+ .....+.-.
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~----~~~s~l------~~~l~~~p~ 590 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK----LNRSSL------FMTLRNQPL 590 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH----HHHHHH------HHHHHhchh
Confidence 9999999998764432 2233455556666777777777777666541 111111 112223344
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHH--hh-----cccchhhHHHHHHHHHhcCChh---H----
Q 038936 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFD--KM-----VDRDVVSWTAMIGRYFQEGRRE---E---- 243 (476)
Q Consensus 178 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--~~-----~~~~~~~~~~l~~~~~~~~~~~---~---- 243 (476)
|..+|.+..+..-. ..+-..|- .++-.++...|. .. .++-..........+.+..... +
T Consensus 591 a~~lY~~~~r~~~~------~~l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 591 ALSLYRQFMRHQDR------ATLYDFYN-QDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred hhHHHHHHHHhhch------hhhhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 44455444432100 01111222 222222222211 10 0111111222233333333211 1
Q ss_pred ---HHHHHHHHHH-cCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHc
Q 038936 244 ---GFALFSELIK-SGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319 (476)
Q Consensus 244 ---a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 319 (476)
-+.+.+.+.. .|......+.+--+.-+...|+..+|.++-.+.. -|+-..|..-+.++...++|++-+++-+
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 1112222211 1323344455555666777788888888766654 5777788888888888999988877766
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHH
Q 038936 320 GMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384 (476)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 384 (476)
.... +.-|.-.+.+|.+.|+.++|.+++-+... .. -...+|.+.|++.+|.+.-
T Consensus 740 skks--PIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 740 SKKS--PIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred ccCC--CCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 6554 67777888899999999999888765322 11 3566778888888877653
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.038 Score=45.16 Aligned_cols=55 Identities=25% Similarity=0.395 Sum_probs=34.0
Q ss_pred HHHHHHcCCCHHHHHHHHHhhccc--c----hhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038936 200 LSDMYGKCGSINEARQIFDKMVDR--D----VVSWTAMIGRYFQEGRREEGFALFSELIKS 254 (476)
Q Consensus 200 l~~~~~~~~~~~~a~~~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 254 (476)
....+...|++.+|.+.|+.+... + ....-.++.++.+.|+++.|...+++.++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444556677777777777777542 1 123445566777777777777777777664
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.001 Score=36.02 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 430 FLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 430 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
.+|..++.++...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468889999999999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.18 Score=48.55 Aligned_cols=53 Identities=9% Similarity=0.187 Sum_probs=39.1
Q ss_pred HHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 038936 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELL 352 (476)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 352 (476)
-++..+.+..+.+.+..+.+...+.++..|..++..+.+.+..+...+...+.
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~v 762 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKV 762 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 35666777778888888888887788889999999999888665544444443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0078 Score=47.93 Aligned_cols=89 Identities=13% Similarity=0.234 Sum_probs=61.9
Q ss_pred ccchhhHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc----------------cccHHHHH
Q 038936 222 DRDVVSWTAMIGRYFQ-----EGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD----------------HAAEELGK 280 (476)
Q Consensus 222 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~a~ 280 (476)
..+-.+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.|+..+-+ ..+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3444555555555543 35555666667777777777777777777776543 23456788
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHhhhcCC
Q 038936 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGN 310 (476)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 310 (476)
.++++|...|+-||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888899888988888888888888876653
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0015 Score=35.30 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 430 FLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 430 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
..|..++..+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 357788889999999999999999999999976
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.025 Score=47.61 Aligned_cols=97 Identities=11% Similarity=0.039 Sum_probs=45.2
Q ss_pred CCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCcHHHHH
Q 038936 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNG---MPDKALEYFELLLKSGTQPDHIVFV 365 (476)
Q Consensus 292 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~ 365 (476)
|.|...|-.|...|...|+++.|..-|....+ +++..+..+..++.... ...++..+|++++... +.|..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 44445555555555555555555555544442 33444444444322211 2244555555555532 22333444
Q ss_pred HHHHHHhccCchhhHHHHHHHHHH
Q 038936 366 GVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 366 ~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
.|...+...|++.+|...|+.|.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 444455555555555555555554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.04 Score=50.63 Aligned_cols=159 Identities=13% Similarity=0.059 Sum_probs=93.4
Q ss_pred HHHHhcCChhHHHHHHHHHH-HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHH
Q 038936 34 QFCRQNRALEEGKKVHSHLK-SSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQAR 112 (476)
Q Consensus 34 ~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 112 (476)
+...-+++++.+.+....-. -..+ +....+.++..+.+.|..+.|+++... | ..-.....+.|+++.|.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---~-----~~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTD---P-----DHRFELALQLGNLDIAL 338 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----H-----HHHHHHHHHCT-HHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---h-----HHHhHHHHhcCCHHHHH
Confidence 34455677777666654111 1112 244466777777788888888876544 1 23355567788888888
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCc
Q 038936 113 NLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS 192 (476)
Q Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 192 (476)
++.+... ++..|..|.+...+.|+++-|.+.|.+... +..++-.+...|+.+...++.+.....|
T Consensus 339 ~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~--- 403 (443)
T PF04053_consen 339 EIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEERG--- 403 (443)
T ss_dssp HHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHcc---
Confidence 8877665 556788888888888888888888887765 5666666666777666666666666555
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHhh
Q 038936 193 DEVVWSALSDMYGKCGSINEARQIFDKM 220 (476)
Q Consensus 193 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 220 (476)
-++....++.-.|+.++..+++.+.
T Consensus 404 ---~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 ---DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1333334444456666666665443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.039 Score=42.40 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHH-----hCCCCchhhH
Q 038936 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-----IGYDPYSFAA 298 (476)
Q Consensus 227 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 298 (476)
....++..+...|+++.|..+...+.... +.+...+..+|.++...|+...|.+.|+.+.+ .|++|++.+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34556677778899999999999888875 66788888999999999999999988887643 3788877654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0041 Score=41.00 Aligned_cols=56 Identities=20% Similarity=0.166 Sum_probs=35.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
..|.+.+++++|+++++.+...+ +.+...+.....++...|++++|.+.++++.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666677777777777776653 224445555666666777777777777776654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.026 Score=43.08 Aligned_cols=91 Identities=10% Similarity=0.058 Sum_probs=58.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 038936 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414 (476)
Q Consensus 335 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 414 (476)
-+...|++++|..+|+-+.-.+. -+..-+..|..++-..+++++|+..|.....-. ..|+..+...+.+|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCHH
Confidence 35567777777777777666442 244455666666677777777777777665431 233444555677777777777
Q ss_pred hHHHHHhhCCCCCc
Q 038936 415 EAEDVISKMPMKPD 428 (476)
Q Consensus 415 ~A~~~~~~~~~~p~ 428 (476)
.|+..|+.+..+|.
T Consensus 123 ~A~~~f~~a~~~~~ 136 (165)
T PRK15331 123 KARQCFELVNERTE 136 (165)
T ss_pred HHHHHHHHHHhCcc
Confidence 77777777644444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.015 Score=42.87 Aligned_cols=52 Identities=8% Similarity=0.166 Sum_probs=41.3
Q ss_pred CCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 038936 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408 (476)
Q Consensus 357 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 408 (476)
..|+..++.+++.+|+..|++..|.++++...+.++++.+..+|..|.+-..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5677888888888888888888888888888888887777778877765443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.013 Score=44.64 Aligned_cols=94 Identities=15% Similarity=0.054 Sum_probs=74.2
Q ss_pred HHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC--CCCCcHHHHHHHHHHHHhcCC
Q 038936 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM--PMKPDKFLWASLLGGCRIHGN 444 (476)
Q Consensus 367 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~ 444 (476)
...-+...|++++|..+|+-+..- -+-+..-+..|+.++-..+++++|+..|..+ -...|+...-..+.++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 444567899999999999988863 2445666888999999999999999999875 122345556667888999999
Q ss_pred hHHHHHHHHHHHHcCCCCc
Q 038936 445 LDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 445 ~~~A~~~~~~~~~~~p~~~ 463 (476)
.+.|...|+.+++ .|.++
T Consensus 121 ~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 121 AAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHHHHHHh-CcchH
Confidence 9999999999998 56554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.014 Score=42.08 Aligned_cols=89 Identities=22% Similarity=0.126 Sum_probs=46.2
Q ss_pred HhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC----CCCC--cHHHHHHHHHHHHhcCC
Q 038936 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM----PMKP--DKFLWASLLGGCRIHGN 444 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~ 444 (476)
....|+.+.|++.|.+...- .|.....|+.-+.++.-+|+.++|++-++++ +.+. --..|..-+..|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 34556666666666655542 2334445555666666666666666555553 1110 11123333333556666
Q ss_pred hHHHHHHHHHHHHcCCC
Q 038936 445 LDLAKRAAEALFEIEPE 461 (476)
Q Consensus 445 ~~~A~~~~~~~~~~~p~ 461 (476)
-+.|..-|+.+-++.++
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 66666666666655543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.57 Score=45.41 Aligned_cols=55 Identities=9% Similarity=0.080 Sum_probs=36.5
Q ss_pred HHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 402 CIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 402 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
.++..+....+.+.+..+.+..+.. ++..|..++..+.+.+..+.-.+...+.++
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 3455566667777777777777533 677777777777777766665555555554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.26 Score=41.39 Aligned_cols=162 Identities=18% Similarity=0.167 Sum_probs=100.9
Q ss_pred HHHHHHHhhhcCChhhHHHHHccCCC--CCh-hhHHHHHH-HHHhcCChHHHHHHHHHHHHcCC--CCcHHHHHHHHHHH
Q 038936 298 ASALVHMYSKCGNVENSKKVFNGMPR--PDL-VSWTSLIA-GYAQNGMPDKALEYFELLLKSGT--QPDHIVFVGVLTAC 371 (476)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~ 371 (476)
+......+...+++..+...+..... ++. ........ .+...|+++.|...+.+...... ......+......+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (291)
T COG0457 98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALL 177 (291)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHH
Confidence 33333444444445555555444443 111 11222222 67788888888888888755221 11233344444446
Q ss_pred hccCchhhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHHHHhcCChHHH
Q 038936 372 THAGLVDKGLQYFHSIKEKHGLTY-TADHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 372 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A 448 (476)
...++.+.+...+.+.... .+. ....+..+...+...++++.|...+... ...|+ ...+......+...|+.+.+
T Consensus 178 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 178 EALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred HHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHH
Confidence 6778888888888888864 233 3667778888888888888888888875 33444 44555555555566778999
Q ss_pred HHHHHHHHHcCCC
Q 038936 449 KRAAEALFEIEPE 461 (476)
Q Consensus 449 ~~~~~~~~~~~p~ 461 (476)
...+++.++..|.
T Consensus 256 ~~~~~~~~~~~~~ 268 (291)
T COG0457 256 LEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHhCcc
Confidence 9999999988886
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.016 Score=43.13 Aligned_cols=54 Identities=7% Similarity=0.156 Sum_probs=27.5
Q ss_pred HHHhccCchhhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 369 TACTHAGLVDKGLQYFHSIKEKHGLTY-TADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
....+.|++++|++.|+.+..++...+ .......++.+|.+.|++++|...+++
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~r 72 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDR 72 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 334455666666666666655433322 122334455555555555555555555
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0051 Score=54.96 Aligned_cols=96 Identities=14% Similarity=-0.018 Sum_probs=64.2
Q ss_pred CcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHH
Q 038936 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA----DHYACIVDLLARSGRFHEAEDVISKM-PMKPDKFLWA 433 (476)
Q Consensus 359 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 433 (476)
.+...+..+..+|...|++++|+..|++.++. .|+. ..|..++.+|...|++++|++.++++ ...+ ..|.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn--~~f~ 147 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN--LKFS 147 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--hhHH
Confidence 35567888889999999999999999998864 5553 34888999999999999999999886 3211 1222
Q ss_pred HHHH--HHHhcCChHHHHHHHHHHHHcC
Q 038936 434 SLLG--GCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 434 ~l~~--~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
.+.. .+....+.++..++++.+.+..
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhC
Confidence 1111 0112233446666666666644
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0039 Score=41.75 Aligned_cols=63 Identities=22% Similarity=0.364 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CC---Cc-HHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSG--TQ---PD-HIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~---~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
.+++.+...|...|++++|+..|++..+.. .. |+ ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356667777777777777777777766430 11 11 34567777777888888888888777654
|
... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0015 Score=35.24 Aligned_cols=25 Identities=28% Similarity=0.598 Sum_probs=22.7
Q ss_pred HHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 451 AAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 451 ~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
.|+++++++|+|+.+|.+||.+|..
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~ 25 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLN 25 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999875
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.25 Score=44.89 Aligned_cols=98 Identities=13% Similarity=0.211 Sum_probs=45.7
Q ss_pred HHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCC--CCcH--HHHHHHHHHHHhc
Q 038936 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM--KPDK--FLWASLLGGCRIH 442 (476)
Q Consensus 367 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~--~~~~~l~~~~~~~ 442 (476)
+..++.+.|+.++|++.++++.+.........+...|+.++...+.+.++..++.+-.. -|.. ..|+..+......
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 34444445555555555555543322112233444455555555555555555554421 1221 1333322222212
Q ss_pred CC---------------hHHHHHHHHHHHHcCCCCch
Q 038936 443 GN---------------LDLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 443 g~---------------~~~A~~~~~~~~~~~p~~~~ 464 (476)
|+ -..|.+.+.++.+.+|.-+.
T Consensus 345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 22 13467889999999996553
|
The molecular function of this protein is uncertain. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.017 Score=47.87 Aligned_cols=102 Identities=13% Similarity=0.063 Sum_probs=79.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC-hhhHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQ--PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT-ADHYACIV 404 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~ 404 (476)
.|+.-+.. .+.|++..|...|...++.... -....+.+|..++...|+++.|...|..+...++-.|. ++.+..|+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46655554 4667799999999999986421 11235667999999999999999999999987665554 47889999
Q ss_pred HHHHhcCChhhHHHHHhhC-CCCCcHH
Q 038936 405 DLLARSGRFHEAEDVISKM-PMKPDKF 430 (476)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~-~~~p~~~ 430 (476)
.+..+.|+.++|..+|+++ ..-|+..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 9999999999999999987 3345433
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.024 Score=45.24 Aligned_cols=89 Identities=10% Similarity=0.222 Sum_probs=67.1
Q ss_pred CCChhhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc----------------CchhhHH
Q 038936 323 RPDLVSWTSLIAGYAQ-----NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA----------------GLVDKGL 381 (476)
Q Consensus 323 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~ 381 (476)
..+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3556666666666654 356666677788888888888899999888887542 2446788
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 038936 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGR 412 (476)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 412 (476)
+++++|... |+.||.+++..+++++++.+.
T Consensus 124 ~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 999999865 999999999999988876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.85 Score=46.16 Aligned_cols=80 Identities=18% Similarity=0.153 Sum_probs=49.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 038936 333 IAGYAQNGMPDKALEYFELLLKSGTQPDHI--VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410 (476)
Q Consensus 333 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 410 (476)
+.+|...|+|.+|+.+..++... -+.. +-..|...+..++++-+|-++..+.... ....+..|++.
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka 1039 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKA 1039 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhH
Confidence 34566677888887777665431 1222 1245666677777777777776655532 23344566777
Q ss_pred CChhhHHHHHhhCC
Q 038936 411 GRFHEAEDVISKMP 424 (476)
Q Consensus 411 g~~~~A~~~~~~~~ 424 (476)
..+++|.++.....
T Consensus 1040 ~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1040 KEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHHHhcc
Confidence 77888887776653
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.46 Score=42.59 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=54.9
Q ss_pred hhHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHH
Q 038936 327 VSWTSLIAG--YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403 (476)
Q Consensus 327 ~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 403 (476)
..-|.+..+ +..+|++.++.-.-..+.+ +.|++.+|..++-+.....++++|.+++. .+||+..+++.-
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~------~LP~n~~~~dsk 531 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQ------KLPPNERMRDSK 531 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHH------hCCCchhhHHHH
Confidence 345555555 6678999999887777777 78999999999999999999999999985 467887777653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.45 Score=42.36 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhhccc-------chhhHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHhhHHH
Q 038936 196 VWSALSDMYGKCGSINEARQIFDKMVDR-------DVVSWTAMIGRYFQ---EGRREEGFALFSELIKSGIRPNAFTFAG 265 (476)
Q Consensus 196 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 265 (476)
+...++-+|....+++..+++++.+... ....-....-++.+ .|+.++|..++..+......+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3345555688888888888888888553 12222334556666 7888888888888666655777777777
Q ss_pred HHHHH
Q 038936 266 VLNAC 270 (476)
Q Consensus 266 l~~~~ 270 (476)
+...|
T Consensus 223 ~GRIy 227 (374)
T PF13281_consen 223 LGRIY 227 (374)
T ss_pred HHHHH
Confidence 66554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.49 Score=42.78 Aligned_cols=149 Identities=11% Similarity=0.015 Sum_probs=84.8
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCCCCChhh
Q 038936 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP---DHIVFVGVLTACTHAGLVDKGLQYFHSIKEK-HGLTYTADH 399 (476)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ 399 (476)
....+|..+...+.+.|+++.|...+.++...+..+ .+.....-++.....|+..+|+..++..... .....+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 445678888888999999999999998887754221 2334444556677788889999888887762 111111111
Q ss_pred HHHHHHHHHhcCChhhHHHH-HhhCCCCCcHHHHHHHHHHHHhc------CChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 400 YACIVDLLARSGRFHEAEDV-ISKMPMKPDKFLWASLLGGCRIH------GNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 400 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
...+...+.. ..+..... ........-...+..++.-.... +..+++...|+++.++.|+...+|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111100 00000000 00000000112333333333333 788999999999999999988899888877
Q ss_pred hh
Q 038936 473 YA 474 (476)
Q Consensus 473 y~ 474 (476)
+.
T Consensus 302 ~~ 303 (352)
T PF02259_consen 302 ND 303 (352)
T ss_pred HH
Confidence 64
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.029 Score=43.13 Aligned_cols=72 Identities=14% Similarity=0.204 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH----hcCCCCChhhH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE----KHGLTYTADHY 400 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 400 (476)
....++..+...|++++|+...+.+.... +.+...+..++.++...|+...|.+.|+++.. ..|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34445666777888888888888888764 34666778888888888888888888776543 34777776554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.16 Score=41.31 Aligned_cols=25 Identities=12% Similarity=-0.039 Sum_probs=16.9
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHH
Q 038936 263 FAGVLNACADHAAEELGKQVHGYMT 287 (476)
Q Consensus 263 ~~~l~~~~~~~~~~~~a~~~~~~~~ 287 (476)
|.-...+|...+++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4444556777778888877776665
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.19 Score=45.43 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=44.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH----IVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.++++.+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456777777777777777777777777774 4553 2466777777777777777777777775
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.26 Score=46.16 Aligned_cols=114 Identities=18% Similarity=0.134 Sum_probs=80.4
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhhHH-HHHHHhhhcCChhhHHHHHccCCC-------CChhhHHHHHHHHHhcCChHH
Q 038936 273 HAAEELGKQVHGYMTRIGYDPYSFAAS-ALVHMYSKCGNVENSKKVFNGMPR-------PDLVSWTSLIAGYAQNGMPDK 344 (476)
Q Consensus 273 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~ 344 (476)
..+.+.+.+++..+.+. -|+...+. .-.+.+...|++++|++.|+.... -....+--+.-.+.-..+|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45677888888888776 45544443 334677888999999999987553 122345556777888999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHH-hccCch-------hhHHHHHHHHHH
Q 038936 345 ALEYFELLLKSGTQPDHIVFVGVLTAC-THAGLV-------DKGLQYFHSIKE 389 (476)
Q Consensus 345 A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~-------~~a~~~~~~~~~ 389 (476)
|...|.++.+.+ .-+..+|..+..+| ...|+. ++|.+++.++..
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999864 34555666555544 567777 788888877653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.2 Score=39.36 Aligned_cols=130 Identities=12% Similarity=0.067 Sum_probs=86.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHH--HHHHHHhccCchhhHHHHHHHHHHhcCCCCCh----hhHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV--GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA----DHYA 401 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ 401 (476)
.|..++.... .+.+ +.....+++...+.......+. .+...+...|++++|...++..... +.|. ..-.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHH
Confidence 3444444433 3333 5555666666653333333333 3455678899999999999877742 2222 1223
Q ss_pred HHHHHHHhcCChhhHHHHHhhCCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 402 CIVDLLARSGRFHEAEDVISKMPMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 402 ~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
.|+......|.+++|+..++....+. .......-+..+...|+.++|...|+++++.++++
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 56778889999999999999875332 33344556677889999999999999999987644
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.32 Score=36.99 Aligned_cols=127 Identities=13% Similarity=0.153 Sum_probs=79.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (476)
....++..+...+.+.....+++.+...+ ..+....+.++..|++.+ ..+..++++. ..+.......+..+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHH
Confidence 34456677777778888888888888776 356667777888877653 3344444432 11222344467777
Q ss_pred HhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 408 ARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH-GNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 408 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
.+.+.++++.-++.+++...+ .+..+... ++++.|++.+++ +.++..|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~~~~------Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGNFKD------AIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcCHHH------HHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 778888888888888763222 22223333 778888877775 345667777766554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0081 Score=32.33 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
+|..++..+...|++++|...|+++++++|+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57778888999999999999999999999954
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.037 Score=48.49 Aligned_cols=86 Identities=17% Similarity=0.101 Sum_probs=50.7
Q ss_pred HHhhhcCChhhHHHHHccCCC------------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHH
Q 038936 303 HMYSKCGNVENSKKVFNGMPR------------------PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF 364 (476)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 364 (476)
..|.+.|++..|..-|+++.. .-..+++.+..+|.+.+++..|+..-.+.+..+ ++|...+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 456666666666666555321 112345556666666666666666666666654 3455555
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHH
Q 038936 365 VGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 365 ~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
..-..++...|+++.|+..|+++++
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 5556666666666666666666664
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.62 Score=38.70 Aligned_cols=241 Identities=16% Similarity=0.223 Sum_probs=131.3
Q ss_pred CCHHHHHHHHHhhccc-------chhhHHHHHHHHHhcCChhHHHHHHHHHHHc---CC--CCCHhhHHHHHHHHhcccc
Q 038936 208 GSINEARQIFDKMVDR-------DVVSWTAMIGRYFQEGRREEGFALFSELIKS---GI--RPNAFTFAGVLNACADHAA 275 (476)
Q Consensus 208 ~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~ 275 (476)
.++++|+.-|+.+.+- ...+...++..+.+.+++++....+.++..- .+ .-+..+.+.++...+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 3566666666665331 1223445566677777777776666665421 11 2344566666666655555
Q ss_pred HHHHHHHHHHHHHh-----CCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---------------CChhhHHHHHHH
Q 038936 276 EELGKQVHGYMTRI-----GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---------------PDLVSWTSLIAG 335 (476)
Q Consensus 276 ~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~l~~~ 335 (476)
.+....+++.-.+. +-...-.+-+.|...|...+++.+..++++++.. .-...|..-++.
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 55444444332221 1122223345677788888888887777776642 113467777888
Q ss_pred HHhcCChHHHHHHHHHHHHcC-CCCcHHHHHHHHHHH-----hccCchhhHHHHHHHHHHhc---CCCCChh--hHHHHH
Q 038936 336 YAQNGMPDKALEYFELLLKSG-TQPDHIVFVGVLTAC-----THAGLVDKGLQYFHSIKEKH---GLTYTAD--HYACIV 404 (476)
Q Consensus 336 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~---~~~~~~~--~~~~l~ 404 (476)
|...++-.+-..++++.+.-. .-|.+.... .++-| .+.|.+++|-.-|-++...+ |.+-... -|..|+
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 888888888888888776532 234444443 44444 45678877765444433321 2222222 244566
Q ss_pred HHHHhcCC----hhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 038936 405 DLLARSGR----FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454 (476)
Q Consensus 405 ~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 454 (476)
..+.+.|- .++|. -.+..|.......++.+|.. ++..+.+++++.
T Consensus 280 NMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 66666662 11111 11344666677788877654 445555444444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.18 Score=43.67 Aligned_cols=149 Identities=12% Similarity=0.046 Sum_probs=67.6
Q ss_pred HcCCCHHHHHHHHHhhcccc------hhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCH---hhHHHHHHHHhcc
Q 038936 205 GKCGSINEARQIFDKMVDRD------VVSWTAMIGRYFQEGRREEGFALFSELIKS--GIRPNA---FTFAGVLNACADH 273 (476)
Q Consensus 205 ~~~~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~---~~~~~l~~~~~~~ 273 (476)
....+.++|+..+......- ..++..+..+.++.|.+++++..--.-+.. ....+. ..|..+..++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778887777665432 124455566667777766655432211110 011111 1233333333344
Q ss_pred ccHHHHHHHHHHHHHh-CCCC---chhhHHHHHHHhhhcCChhhHHHHHccCCC-----C----ChhhHHHHHHHHHhcC
Q 038936 274 AAEELGKQVHGYMTRI-GYDP---YSFAASALVHMYSKCGNVENSKKVFNGMPR-----P----DLVSWTSLIAGYAQNG 340 (476)
Q Consensus 274 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~ 340 (476)
-++.+++.+-..-... |..| .......+..++...+.++++++.|+...+ . ...++..|...|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4444444443332222 1111 011222344445555555555555554432 1 1234555555566666
Q ss_pred ChHHHHHHHHHHH
Q 038936 341 MPDKALEYFELLL 353 (476)
Q Consensus 341 ~~~~A~~~~~~~~ 353 (476)
|+++|.-+..+..
T Consensus 177 D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 177 DYEKALFFPCKAA 189 (518)
T ss_pred hhhHHhhhhHhHH
Confidence 6666655554443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.24 Score=45.69 Aligned_cols=155 Identities=10% Similarity=0.136 Sum_probs=105.1
Q ss_pred hhhhcCCHHHHHHHHHh--c-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 038936 4 ILCNQRRLKEALQILHQ--I-SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDA 80 (476)
Q Consensus 4 ~~~~~~~~~~A~~~~~~--~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 80 (476)
...-+|+++++.+..+. + +.-+....+.+++-+.+.|-++.|+++-++ +. .-.....+.|+++.|
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIA 337 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHH
Confidence 34567888998777762 2 233466688889989999999999987433 22 234566789999999
Q ss_pred HHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCch
Q 038936 81 QTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKF 160 (476)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 160 (476)
.++.++.. +...|..|.....+.|+++-|.+.|++... +..|+-.|.-.|+.+.-.++.+.... .+
T Consensus 338 ~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~-~~------ 403 (443)
T PF04053_consen 338 LEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEE-RG------ 403 (443)
T ss_dssp HHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHH-TT------
T ss_pred HHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHH-cc------
Confidence 98887754 567999999999999999999999998864 66777788889998887777766654 22
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHH
Q 038936 161 TLSSVLSAVSAIQCLRLGKEIHGY 184 (476)
Q Consensus 161 ~~~~ll~~~~~~~~~~~a~~~~~~ 184 (476)
-++..+.++.-.|+.++..+++..
T Consensus 404 ~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 255666666667777776666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.66 Score=38.47 Aligned_cols=62 Identities=19% Similarity=-0.034 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHccc
Q 038936 28 IYSSLIQFCRQNRALEEGKKVHSHLKSSGF--KPGVFISNCLLDMYAKCGNISDAQTLFDEMQE 89 (476)
Q Consensus 28 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 89 (476)
.+..-+..-.+.|++++|.+.|+.+.+.-+ +-...+...++.++-+.++++.|+..++....
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 333334445566777777777777765421 11223334444555566777777777666553
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.024 Score=48.23 Aligned_cols=100 Identities=14% Similarity=0.092 Sum_probs=63.4
Q ss_pred HHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCC--CCCcHHHHHHHHHHHHhcCChH
Q 038936 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP--MKPDKFLWASLLGGCRIHGNLD 446 (476)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~ 446 (476)
.-|.++|.+++|+.+|.+.... .+.++..+..-+.+|.+..++..|..-...+- .+.-...|..-+.+-...|+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 3466777777777777776642 22266666666677777777776665554431 1122335555555556678888
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHH
Q 038936 447 LAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 447 ~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
+|.+-++.+++++|++...--.++
T Consensus 183 EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred HHHHhHHHHHhhCcccHHHHHHHH
Confidence 888888888888888654444433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.07 E-value=1.3 Score=41.62 Aligned_cols=157 Identities=14% Similarity=0.094 Sum_probs=81.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhccCCCCCch-----HHHHHHHHHHh----hhhhhhHHHHHHHHHHcCCCchHHHHH
Q 038936 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKF-----TLSSVLSAVSA----IQCLRLGKEIHGYIMRTGFDSDEVVWS 198 (476)
Q Consensus 128 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 198 (476)
.++....=.|+-+..++.+....+..++.-... .|..++..++. ..+.+.+.++++.+.++ -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 344444556777777777776654222222221 22222322222 23456667777766654 24433332
Q ss_pred -HHHHHHHcCCCHHHHHHHHHhhccc-------chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038936 199 -ALSDMYGKCGSINEARQIFDKMVDR-------DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270 (476)
Q Consensus 199 -~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (476)
.-.+.+...|++++|++.|+..... ....+-.+.-.+.-.++|++|...|..+.+.. ..+..+|..+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 2345566677777777777765331 11223344555666677777777777776654 34444444444332
Q ss_pred -hccccH-------HHHHHHHHHHH
Q 038936 271 -ADHAAE-------ELGKQVHGYMT 287 (476)
Q Consensus 271 -~~~~~~-------~~a~~~~~~~~ 287 (476)
...++. ++|..++.++.
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 234444 55555555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.17 Score=45.76 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 343 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
.+|.+..++..+.+ +.|......+..+....++++.|...|+++..- .|.....|...+....-+|+.++|.+.+++
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34555555555544 335555555555555555566666666666542 122344455555555566666666666666
Q ss_pred -CCCCCcHH---HHHHHHHHHHhcCChHHHHHHHHHHH
Q 038936 423 -MPMKPDKF---LWASLLGGCRIHGNLDLAKRAAEALF 456 (476)
Q Consensus 423 -~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 456 (476)
+...|... .....+..|+. ...+.|+.+|-+-.
T Consensus 398 alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 434 (458)
T PRK11906 398 SLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLYYKET 434 (458)
T ss_pred HhccCchhhHHHHHHHHHHHHcC-CchhhhHHHHhhcc
Confidence 34444332 22222223333 33555665555433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.014 Score=31.95 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 431 LWASLLGGCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
+|..++..|...|++++|+.+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46788899999999999999999966543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.091 Score=38.02 Aligned_cols=83 Identities=19% Similarity=0.059 Sum_probs=44.5
Q ss_pred hhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCChH
Q 038936 5 LCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGV---FISNCLLDMYAKCGNIS 78 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 78 (476)
+...|+++.|++.|.+.. +..+++||.-.+++.-+|+.++|++=+++..+..-..+. ..|..-...|-..|+.+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 455666666666666653 556666666666666666666666666666554211111 12222233444455555
Q ss_pred HHHHHHHHc
Q 038936 79 DAQTLFDEM 87 (476)
Q Consensus 79 ~A~~~~~~~ 87 (476)
.|..=|+..
T Consensus 133 ~AR~DFe~A 141 (175)
T KOG4555|consen 133 AARADFEAA 141 (175)
T ss_pred HHHHhHHHH
Confidence 555555543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.89 Score=38.53 Aligned_cols=139 Identities=9% Similarity=0.061 Sum_probs=82.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccccc-c---hHHHHHHHHHHhcCCH
Q 038936 33 IQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERD-V---CSYNTMISGFTKGGSL 108 (476)
Q Consensus 33 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~ 108 (476)
.......|++.+|...|......... +...-..+..+|...|+.+.|..++..+.... . .....-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34556778888888888888776432 45566677788888888888888888876421 1 1112233444444444
Q ss_pred HHHHHHHhcCCC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhh
Q 038936 109 EQARNLFDEMPQ-R-DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAI 172 (476)
Q Consensus 109 ~~a~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 172 (476)
.+...+-.+.-. | |...-..+...+...|+.+.|++.+-.+.......-|...-..++..+...
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~ 285 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAF 285 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhc
Confidence 444443333322 3 455566677777788888888877766665344444444444444444333
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.52 Score=35.79 Aligned_cols=126 Identities=15% Similarity=0.146 Sum_probs=81.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCH
Q 038936 29 YSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSL 108 (476)
Q Consensus 29 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 108 (476)
...++..+...+.+.....+++.+...+. .+...++.++..|++.+ ..+..+.+.. ..+.......+..|.+.+-+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 44566777777788888888888877763 57778888888887654 3444444442 34455566677777777888
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhc-CChhHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 038936 109 EQARNLFDEMPQRDNFSWTAMISGYVRY-NQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVS 170 (476)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 170 (476)
+++.-++.++.. +...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 86 ~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~-------~~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ-------NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC-------CCHHHHHHHHHHHH
Confidence 888887777643 33344444444 7777777776642 23446666665544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.15 Score=37.68 Aligned_cols=108 Identities=18% Similarity=0.161 Sum_probs=66.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 038936 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405 (476)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (476)
..++..++.++++.|+.+....+++..-. +.++... ..+. .....+..|+..+..+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~----------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD----------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc----------cCCCCCCCCCHHHHHHHHH
Confidence 44566666777777776666666654432 2222110 0000 2223367889999999999
Q ss_pred HHHhcCChhhHHHHHhhC----CCCCcHHHHHHHHHHHHhcC--ChHHHHHHHHH
Q 038936 406 LLARSGRFHEAEDVISKM----PMKPDKFLWASLLGGCRIHG--NLDLAKRAAEA 454 (476)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~ 454 (476)
+|+..|++..|+++++.. +++-+...|..++.-....- +.+.+.+.+.+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~~~~~~~~~~~~~ 115 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSSKREDRAARYFLK 115 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCcccccHHHHhh
Confidence 999999999999998875 45556778888886554432 34444444433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.4 Score=41.60 Aligned_cols=220 Identities=9% Similarity=0.034 Sum_probs=129.2
Q ss_pred HHhhhhhhhHHHHHHHHHHcC--CCchHHHHHHHHHHHHcCCCHHHHHHHHHhh----ccc-c----hhhHHHHHHHHHh
Q 038936 169 VSAIQCLRLGKEIHGYIMRTG--FDSDEVVWSALSDMYGKCGSINEARQIFDKM----VDR-D----VVSWTAMIGRYFQ 237 (476)
Q Consensus 169 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~-~----~~~~~~l~~~~~~ 237 (476)
+....+.+++...|..-+.+- ...-..++..+..+.++.|.+++++..--.. .+. | ...|-.+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888887766542 1122346677788888889888876553222 111 1 2345556666666
Q ss_pred cCChhHHHHHHHHHHHc-CCCCC---HhhHHHHHHHHhccccHHHHHHHHHHHHHhCCC-----CchhhHHHHHHHhhhc
Q 038936 238 EGRREEGFALFSELIKS-GIRPN---AFTFAGVLNACADHAAEELGKQVHGYMTRIGYD-----PYSFAASALVHMYSKC 308 (476)
Q Consensus 238 ~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~ 308 (476)
..++.+++.+-..-... |..|. -....++..++...+.++++.+.|+...+.... ....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66666666665544332 22221 123344566777888999999999988765222 2245778889999999
Q ss_pred CChhhHHHHHccCCC-------CChh-hH-----HHHHHHHHhcCChHHHHHHHHHHHH----cCCCCcH-HHHHHHHHH
Q 038936 309 GNVENSKKVFNGMPR-------PDLV-SW-----TSLIAGYAQNGMPDKALEYFELLLK----SGTQPDH-IVFVGVLTA 370 (476)
Q Consensus 309 ~~~~~a~~~~~~~~~-------~~~~-~~-----~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~-~~~~~l~~~ 370 (476)
.++++|.-+..+..+ .|.. -| -.+..++...|....|.+.-++..+ .|-.+.. .....+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999988766544321 2221 12 2233446666666666666666543 3322211 234455556
Q ss_pred HhccCchhhHHHHHHHHH
Q 038936 371 CTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~ 388 (476)
|...|+.+.|..-|+.+.
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 666777777666665554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.75 E-value=1 Score=37.71 Aligned_cols=197 Identities=17% Similarity=0.123 Sum_probs=135.2
Q ss_pred cHHHHHHHHHHHHHhCCC-CchhhHHHHHHHhhhcCChhhHHHHHccCC-----CCChhhHHHHHHHHHhcCChHHHHHH
Q 038936 275 AEELGKQVHGYMTRIGYD-PYSFAASALVHMYSKCGNVENSKKVFNGMP-----RPDLVSWTSLIAGYAQNGMPDKALEY 348 (476)
Q Consensus 275 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~ 348 (476)
....+...+......... ............+...+++..+...+.... ......+......+...+++..+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444433211 124555666677777788887777776654 23445677777788888889999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHH-HHhccCchhhHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChhhHHHHHhhC-C
Q 038936 349 FELLLKSGTQPDHIVFVGVLT-ACTHAGLVDKGLQYFHSIKEKHGL--TYTADHYACIVDLLARSGRFHEAEDVISKM-P 424 (476)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 424 (476)
+.........+ ......... .+...|+++.|...+.+.... .. ......+......+...++.++|...+.+. .
T Consensus 118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 118 LEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 99998854333 122222333 688999999999999998642 21 123444455555577889999999999986 3
Q ss_pred CCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 425 MKPD--KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 425 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
..++ ...+..+...+...++++.|...+..+....|.....+..++..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLL 246 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHH
Confidence 3444 567888888889999999999999999999998555666655554
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.76 Score=37.38 Aligned_cols=20 Identities=10% Similarity=-0.149 Sum_probs=10.6
Q ss_pred hcCChHHHHHHHHHHHHcCC
Q 038936 441 IHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 441 ~~g~~~~A~~~~~~~~~~~p 460 (476)
..+++.+|+.+|++.....-
T Consensus 166 ~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33555566666655554333
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.76 Score=35.68 Aligned_cols=132 Identities=12% Similarity=0.137 Sum_probs=69.6
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhc--CCHHHHHHHHhcCCCCCc
Q 038936 46 KKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKG--GSLEQARNLFDEMPQRDN 123 (476)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~ 123 (476)
.+++..+.+.+++|+...+..++..+.+.|++....+++..-.=+|.......+-.+... .-..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~---- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG---- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----
Confidence 345555566777777777777888888777777777666653333333322222111111 11233444444443
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 038936 124 FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIM 186 (476)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 186 (476)
..+..++..+...|++-+|+++.++...... .....++.+..+.+|...-..+++...
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~~~~~-----~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYHKVDS-----VPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcCCccc-----CCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2355666777778888888887766432111 122334444444444444444444333
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.9 Score=39.57 Aligned_cols=58 Identities=12% Similarity=0.201 Sum_probs=27.3
Q ss_pred CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHc
Q 038936 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319 (476)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 319 (476)
|......++..+.......-+..+..+|...| .+...+..++++|... ..++-..+|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWe 122 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWE 122 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHH
Confidence 44444555555555555555555555555543 2333344444555444 2333334444
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.19 Score=39.57 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=51.6
Q ss_pred HhccCchhhHHHHHHHHHHhcCCCCCh-----hhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHHHHhcC
Q 038936 371 CTHAGLVDKGLQYFHSIKEKHGLTYTA-----DHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGGCRIHG 443 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g 443 (476)
+...|++++|..-|..+++. .++.. ..|..-+.++.+.+.++.|++-..++ .+.|. ......-..+|-+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 44566666666666666653 22221 12233344556666666666655553 44442 223333344566666
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHH
Q 038936 444 NLDLAKRAAEALFEIEPENPATYV 467 (476)
Q Consensus 444 ~~~~A~~~~~~~~~~~p~~~~~~~ 467 (476)
.+++|+.-|+++++.+|.+..+..
T Consensus 183 k~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHH
Confidence 777777777777777776554443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.64 Score=33.99 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=70.8
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHH
Q 038936 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315 (476)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (476)
.-.|..++..++..+...+. +..-++.++--....-+-+...+.++.+-+. .|. ..+|++....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHH
Confidence 34566677777777666532 3333444443333333333333333333221 121 1223333333
Q ss_pred HHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCC
Q 038936 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393 (476)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 393 (476)
..+-.+. .+.......+..+..+|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++-++ |+
T Consensus 77 ~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 77 ECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3322221 222334456677888888888888888887643 677778888888899999999998888888765 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.089 Score=31.63 Aligned_cols=37 Identities=32% Similarity=0.365 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 038936 433 ASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469 (476)
Q Consensus 433 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 469 (476)
-.+.-++.+.|++++|.+..+.+++.+|+|..+....
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 3455678999999999999999999999998765543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.76 Score=35.42 Aligned_cols=119 Identities=11% Similarity=0.096 Sum_probs=57.9
Q ss_pred HhcCCHHHHHHHHhcCCCCCcchHHHHH-----HHHHhcCChhHHHHHHHHHHhccCCCCCch-HHHHHHH--HHHhhhh
Q 038936 103 TKGGSLEQARNLFDEMPQRDNFSWTAMI-----SGYVRYNQPIEALDLYRMMQNFENSVSNKF-TLSSVLS--AVSAIQC 174 (476)
Q Consensus 103 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ll~--~~~~~~~ 174 (476)
.+.+..++|+.-|..+.+.+-..|-.|. ......|+...|...|.++-. ....|-.. ....+=. .+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~-dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA-DTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc-cCCCcchhhHHHHHHHHHHHhcccc
Confidence 4456666666666666555444444333 334566777777777777765 22223221 1111111 1233444
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc
Q 038936 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD 222 (476)
Q Consensus 175 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 222 (476)
++.+....+.+-..+-+.-...-..|.-+-.+.|++.+|.++|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 444444444443333333333444455555555666666666655533
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.19 E-value=2.3 Score=38.37 Aligned_cols=125 Identities=17% Similarity=0.232 Sum_probs=69.0
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHccCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHH-HHHHH
Q 038936 296 FAASALVHMYSKCGNVENSKKVFNGMPR-----PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF-VGVLT 369 (476)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~ 369 (476)
.++...+..-.+...++.|..+|-++.+ +++..+++++..++ .|++..|..+|+--... .||...| .-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 3444455555556666677777766654 45556666666554 35566677777655443 2333332 33344
Q ss_pred HHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 370 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
-+...++-..|..+|+...++..-..-..+|..++.-=..-|++..+..+=+++
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 455666777777777755543111111455666666666666666665544443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.11 E-value=1.5 Score=40.22 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=39.6
Q ss_pred hhhHHHHHHHhhhcCChhhHHHHHccCCC--CC---hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 295 SFAASALVHMYSKCGNVENSKKVFNGMPR--PD---LVSWTSLIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
..+-..+..+.-+.|+.++|++.++++.+ |. ......|+.++...+.+.++..++.+--+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33344566666677777777777777764 22 23455677778888888888877777644
|
The molecular function of this protein is uncertain. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.056 Score=28.63 Aligned_cols=31 Identities=19% Similarity=0.117 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 432 WASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
+-.++.++...|++++|.+.++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3456777888899999999999999999964
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=2 Score=39.20 Aligned_cols=107 Identities=9% Similarity=-0.027 Sum_probs=58.1
Q ss_pred hHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCchhhHHHHHHHHH
Q 038936 313 NSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH-IVFVGVLTACTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 313 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 388 (476)
+|.++-+...+ .|+.....+..+..-.++++.|...|++.... .||. .+|......+.-.|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44444444443 45555555666566666677777777777764 3443 344444555566777777777777766
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 389 EKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 389 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
+..+......+....++.|+..+ +++|++++-+
T Consensus 400 rLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 400 QLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred ccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 43222222333333344454433 5666665543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.99 E-value=3.2 Score=38.96 Aligned_cols=181 Identities=12% Similarity=0.091 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHh
Q 038936 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305 (476)
Q Consensus 226 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (476)
.+|...+.--...|+++.+.-+|++..-.--.-+...+ -.+.-....|+.+.+..++....+.-++..+.+--.-....
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWi-ky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWI-KYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHH-HHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 45666667777777887777777776532211222222 22222233377777777766666555444433322222333
Q ss_pred hhcCChhhHHHHHccCCC--CChh-hHHHHHHHHHhcCChHHHH---HHHHHHHHcCCCCcHHHHHHHH----H-HHhcc
Q 038936 306 SKCGNVENSKKVFNGMPR--PDLV-SWTSLIAGYAQNGMPDKAL---EYFELLLKSGTQPDHIVFVGVL----T-ACTHA 374 (476)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~A~---~~~~~~~~~~~~~~~~~~~~l~----~-~~~~~ 374 (476)
-..|++..|..+++.+.+ |+.. .-..-+....+.|+.+.+. +++....... -+..+...+. + .+.-.
T Consensus 377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHHHHh
Confidence 445677888777777764 3322 1112233345566666665 2222222211 1111111111 1 12335
Q ss_pred CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 038936 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411 (476)
Q Consensus 375 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 411 (476)
++.+.|..++.++.+ -.+++...|..++....-.+
T Consensus 455 ~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEAND--ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCC
Confidence 677778888877775 45666666776666655444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.92 E-value=2.3 Score=36.88 Aligned_cols=20 Identities=20% Similarity=-0.089 Sum_probs=14.1
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 038936 437 GGCRIHGNLDLAKRAAEALF 456 (476)
Q Consensus 437 ~~~~~~g~~~~A~~~~~~~~ 456 (476)
..+.+.++++.|.+.|+-++
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 33556788888888887654
|
It is also involved in sporulation []. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.79 E-value=4.3 Score=39.46 Aligned_cols=100 Identities=13% Similarity=0.109 Sum_probs=62.1
Q ss_pred HHHHHhcCChHHHHHHHHHcccc-----cchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHH
Q 038936 68 LDMYAKCGNISDAQTLFDEMQER-----DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142 (476)
Q Consensus 68 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 142 (476)
+..+.+.+.+++|+.+.+..... -...+...+..+.-.|++++|-...-.|...+..-|.-.+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 45566777788888777766542 2245667777777888888888877777777766676666666666655443
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHh
Q 038936 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSA 171 (476)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 171 (476)
..+ +.. .....+...|..++..+..
T Consensus 443 a~~---lPt-~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APY---LPT-GPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hcc---CCC-CCcccCchHHHHHHHHHHH
Confidence 332 222 2223345556666665554
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.77 E-value=1.9 Score=35.22 Aligned_cols=91 Identities=12% Similarity=0.100 Sum_probs=47.6
Q ss_pred CchhhHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChhhHHHHHhhC---CCCCcHHHHH------HHHHHHHh
Q 038936 375 GLVDKGLQYFHSIKEKHGLTYT----ADHYACIVDLLARSGRFHEAEDVISKM---PMKPDKFLWA------SLLGGCRI 441 (476)
Q Consensus 375 ~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~------~l~~~~~~ 441 (476)
.++++|+..|+...+-+..... ...+...+..-...|++.+|+++|+++ ....+..-|. ..+.++.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 5666666666665542211111 112223334445677788888888775 2222222221 11112222
Q ss_pred cCChHHHHHHHHHHHHcCCCCchh
Q 038936 442 HGNLDLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 442 ~g~~~~A~~~~~~~~~~~p~~~~~ 465 (476)
.+|.-.+...+++..+++|.-..+
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccccc
Confidence 367777788888888888864443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.095 Score=30.19 Aligned_cols=39 Identities=8% Similarity=0.016 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 038936 27 SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66 (476)
Q Consensus 27 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 66 (476)
.++..+...+.+.|++++|.++|++.++.. +-|...+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~ 40 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHH
Confidence 456667777777777777777777777754 224444433
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.097 Score=48.18 Aligned_cols=101 Identities=13% Similarity=0.097 Sum_probs=79.0
Q ss_pred HhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC--CCCCcHHHHHHHHHHHHhcCChHHH
Q 038936 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM--PMKPDKFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A 448 (476)
+.-.|+...|..++..+....... .......|+..+.+.|...+|..++.+. -....+.++..+++++....+.+.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~-~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQ-QDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhh-hcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 345789999999998887432222 2223556788889999999999988774 2234566888899999999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHh
Q 038936 449 KRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 449 ~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
++.++.+++++|+++.+-+.|..+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHH
Confidence 999999999999999888877654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.73 E-value=1.2 Score=35.38 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=59.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHH---
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI--VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYAC--- 402 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--- 402 (476)
.+..+...|++.|+.++|++.|.++.+....|... .+..+++.....+++..+...+.++........+...-+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45567777888888888888888877765444443 3556677777778888777777776643222112111111
Q ss_pred -HHHHHHhcCChhhHHHHHhhC
Q 038936 403 -IVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 403 -l~~~~~~~g~~~~A~~~~~~~ 423 (476)
-+-.+...+++.+|-+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 122344677888888877765
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.66 E-value=1.6 Score=33.81 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=82.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHH-----HHHHHh
Q 038936 336 YAQNGMPDKALEYFELLLKSGTQPDHI-VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI-----VDLLAR 409 (476)
Q Consensus 336 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~ 409 (476)
+.+.+..++|+.-|..+.+.|...-+. ............|+...|...|.++-.. .|.+.....+ ...+..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 456778899999999998877543222 1222334457789999999999988865 3333333222 345678
Q ss_pred cCChhhHHHHHhhCCC--CC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 410 SGRFHEAEDVISKMPM--KP-DKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 410 ~g~~~~A~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
.|.+++....++.+.. .| ....-..|..+-.+.|++.+|.+.|+++..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8889888888888732 23 334556777778888999999999998877
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.58 E-value=1.6 Score=33.51 Aligned_cols=53 Identities=19% Similarity=0.166 Sum_probs=30.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHH-HHHHhccCchhhHHHHHHHHHHh
Q 038936 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGV-LTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 336 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
-.+.++.+++..++..+.- +.|.......+ ...+...|++.+|..+|+++.+.
T Consensus 20 al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4456667777777776666 34544333222 23345667777777777776543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.1 Score=29.44 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 430 FLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 430 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
.+++.++..|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888888876
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.49 E-value=1.4 Score=32.36 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCC
Q 038936 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292 (476)
Q Consensus 228 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 292 (476)
.+..+.....+|+-++-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4445667777888888888888876543 677777778888888888888888888888887743
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.47 E-value=5.2 Score=38.96 Aligned_cols=145 Identities=14% Similarity=0.174 Sum_probs=85.1
Q ss_pred hhhhhhcCCHHHHHHHHHhcC--CC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038936 2 IDILCNQRRLKEALQILHQIS--HP---SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76 (476)
Q Consensus 2 i~~~~~~~~~~~A~~~~~~~~--~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 76 (476)
|+-+.+.+.+++|++..+... .+ -...+...|..+...|++++|-...-.|... +...|......++..++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 566788899999999998875 23 3456778888888889999988887777653 44555555555555554
Q ss_pred hHHHHHHHHHccc-ccchHHHHHHHHHHhcCCHHHHHHHHhcCC--------------C------CCcchHHHHHHHHHh
Q 038936 77 ISDAQTLFDEMQE-RDVCSYNTMISGFTKGGSLEQARNLFDEMP--------------Q------RDNFSWTAMISGYVR 135 (476)
Q Consensus 77 ~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------------~------~~~~~~~~l~~~~~~ 135 (476)
......++=.-.. -++..|..++..+.. .+...=.++..... . .+...-..|+..|..
T Consensus 439 l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~ 517 (846)
T KOG2066|consen 439 LTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLY 517 (846)
T ss_pred cchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHH
Confidence 3332221111000 134556666666554 22222222222111 0 122234447777888
Q ss_pred cCChhHHHHHHHHHHh
Q 038936 136 YNQPIEALDLYRMMQN 151 (476)
Q Consensus 136 ~~~~~~a~~~~~~~~~ 151 (476)
.+++..|+.++-.+.+
T Consensus 518 d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 518 DNKYEKALPIYLKLQD 533 (846)
T ss_pred ccChHHHHHHHHhccC
Confidence 8888888888776654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.58 Score=39.15 Aligned_cols=107 Identities=17% Similarity=0.214 Sum_probs=72.6
Q ss_pred HHHHhhc--ccchhhHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc--------------
Q 038936 215 QIFDKMV--DRDVVSWTAMIGRYFQ-----EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH-------------- 273 (476)
Q Consensus 215 ~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------- 273 (476)
+.|.... ++|-.+|-..+..+.. .+..+-....++.|.+-|+.-|..+|..|++.+-+.
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3444443 4455556655555543 345566666777888888888888888888776542
Q ss_pred --ccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChh-hHHHHHccC
Q 038936 274 --AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE-NSKKVFNGM 321 (476)
Q Consensus 274 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~ 321 (476)
.+-+-++.++++|...|+.||..+-..++.++.+.+-.- +..++.--|
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 234568889999999999999999999999998877543 334443333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.98 E-value=3.5 Score=35.13 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=30.4
Q ss_pred HhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCC
Q 038936 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322 (476)
Q Consensus 270 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (476)
....|+...|..+++...... +-+......+..+|...|+.+.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 345566666666666665553 2334444456666666666666666666655
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.15 Score=27.71 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 038936 329 WTSLIAGYAQNGMPDKALEYFEL 351 (476)
Q Consensus 329 ~~~l~~~~~~~~~~~~A~~~~~~ 351 (476)
|..|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555555555
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.11 Score=39.77 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=43.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHH
Q 038936 32 LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQA 111 (476)
Q Consensus 32 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 111 (476)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++... ......++..|.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCHHHHHHHHHhcchHHHH
Confidence 344455556666666666666655544556666666666666666566665555321 12233344444444444444
Q ss_pred HHHHhcC
Q 038936 112 RNLFDEM 118 (476)
Q Consensus 112 ~~~~~~~ 118 (476)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 4444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=4.3 Score=35.13 Aligned_cols=222 Identities=10% Similarity=0.026 Sum_probs=127.6
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh----HHHHHHHHHc--ccc
Q 038936 17 ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNI----SDAQTLFDEM--QER 90 (476)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~--~~~ 90 (476)
+++.+..+|..+....+..+...|..+ +...+..+... ++...-...+.++...|+. .++...+..+ .++
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~ 103 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRGGQD-VFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDK 103 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCcch-HHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCC
Confidence 344445888888888999888888644 44444445443 3556666667777777764 4678888766 356
Q ss_pred cchHHHHHHHHHHhcCCH-----HHHHHHHh-cCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHH
Q 038936 91 DVCSYNTMISGFTKGGSL-----EQARNLFD-EMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164 (476)
Q Consensus 91 ~~~~~~~l~~~~~~~g~~-----~~a~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 164 (476)
+..+....+.++...+.. ..+...+. .+..++..+-...+.++.+.++ +.++..+-.+.. .++...-..
T Consensus 104 d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~----d~~~~VR~~ 178 (280)
T PRK09687 104 SACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK----DPNGDVRNW 178 (280)
T ss_pred CHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc----CCCHHHHHH
Confidence 777777777777665432 23344443 3445677777788888888886 566777666664 233334444
Q ss_pred HHHHHHhhh-hhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhH
Q 038936 165 VLSAVSAIQ-CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREE 243 (476)
Q Consensus 165 ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 243 (476)
.+.++...+ ....+...+..++. .++..+....+.++.+.|+. .++..+-...+.+. .....+.++...|.. +
T Consensus 179 A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 179 AAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-hHHHHHHHHHhcCCH-h
Confidence 444444332 12334444444432 34555666666677776664 34444333333222 223445555555553 4
Q ss_pred HHHHHHHHHH
Q 038936 244 GFALFSELIK 253 (476)
Q Consensus 244 a~~~~~~~~~ 253 (476)
|...+.++.+
T Consensus 253 a~p~L~~l~~ 262 (280)
T PRK09687 253 LLPVLDTLLY 262 (280)
T ss_pred HHHHHHHHHh
Confidence 5666665554
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.14 Score=26.54 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 431 LWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
.|..++..+...|++++|...++++++..|++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 46667777888899999999999998888753
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=93.52 E-value=5.5 Score=35.90 Aligned_cols=164 Identities=18% Similarity=0.240 Sum_probs=103.8
Q ss_pred cCChhhHHHHHccCCC----CChhhHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCcHH----HHHHHHHHHhccCchh
Q 038936 308 CGNVENSKKVFNGMPR----PDLVSWTSLIAG-YAQNGMPDKALEYFELLLKSGTQPDHI----VFVGVLTACTHAGLVD 378 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~ 378 (476)
.|+.+++.+.+..+.. +....+-.|+.+ .....++.+|+++|+...-. .|-.. ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5777777777777763 334456666655 55667888999999887652 34332 2333344456788888
Q ss_pred hHHHHHHHHHHhcCCCCChhh-HHHHHHHHHhcCC---hhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 038936 379 KGLQYFHSIKEKHGLTYTADH-YACIVDLLARSGR---FHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEA 454 (476)
Q Consensus 379 ~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 454 (476)
++..+-.+...++...|-..- +..+...+.+.++ .+.-..++..|.-.-....|..+...-...|+.+-|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 888777777766554443332 3334444444443 344445555554333456888888888888999999999999
Q ss_pred HHHcCCCCchhHHHHHHhhh
Q 038936 455 LFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 455 ~~~~~p~~~~~~~~l~~~y~ 474 (476)
++.+.+ +...-...+.+|.
T Consensus 283 A~~L~~-~~~~~~~ra~LY~ 301 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYR 301 (421)
T ss_pred HHHhcc-CCCcchHHHHHHH
Confidence 998774 3445555555554
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.97 Score=33.22 Aligned_cols=74 Identities=19% Similarity=0.161 Sum_probs=54.2
Q ss_pred CCChhhHHHHHHHHHhcCChh---hHHHHHhhC-C-CCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 038936 394 TYTADHYACIVDLLARSGRFH---EAEDVISKM-P-MKPD--KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATY 466 (476)
Q Consensus 394 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 466 (476)
.++..+-..+++++.+..+.+ +-+.+++++ + ..|+ ......+.-++.+.++++.++++.+..++.+|+|..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 667777778888888877644 456677765 2 3343 23444566678899999999999999999999987765
Q ss_pred H
Q 038936 467 V 467 (476)
Q Consensus 467 ~ 467 (476)
.
T Consensus 109 ~ 109 (149)
T KOG3364|consen 109 E 109 (149)
T ss_pred H
Confidence 3
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.39 E-value=4.9 Score=34.91 Aligned_cols=148 Identities=11% Similarity=0.003 Sum_probs=81.0
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc---ccchH--H--HHHHHHHHhcCCH
Q 038936 36 CRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE---RDVCS--Y--NTMISGFTKGGSL 108 (476)
Q Consensus 36 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~--~--~~l~~~~~~~g~~ 108 (476)
+-.+|++.+|-..++++.+. .+.|.-.++..=.++.-.|+.+.-...++++.. ++... | ..+.-++..+|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34456666666666666664 444556666566666666776666666666653 23222 2 2333444566777
Q ss_pred HHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccC--CCCCchHHHHHHHHHHhhhhhhhHHHHHH
Q 038936 109 EQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFEN--SVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183 (476)
Q Consensus 109 ~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 183 (476)
++|++.-++..+- |...-.++...+-..|+.+++.++..+-...-. --.-...|-...-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 7777766666543 334445555666666777777766654432111 01111223333334444466777777766
Q ss_pred H
Q 038936 184 Y 184 (476)
Q Consensus 184 ~ 184 (476)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.094 Score=28.15 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=15.2
Q ss_pred CCChhhHHHHHHHHHhcCChhhHH
Q 038936 394 TYTADHYACIVDLLARSGRFHEAE 417 (476)
Q Consensus 394 ~~~~~~~~~l~~~~~~~g~~~~A~ 417 (476)
|-+...|..++.+|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445566666666666666666664
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.35 E-value=1.3 Score=37.13 Aligned_cols=97 Identities=13% Similarity=0.206 Sum_probs=73.2
Q ss_pred HHHHccCC--CCChhhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC------------
Q 038936 315 KKVFNGMP--RPDLVSWTSLIAGYAQ-----NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG------------ 375 (476)
Q Consensus 315 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------ 375 (476)
++.|..+. +.|-.+|...+..+.. .+..+-....++.|.+-|+.-|..+|..|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555555 4566777777777654 3455666677888999999999999999998875532
Q ss_pred ----chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 038936 376 ----LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412 (476)
Q Consensus 376 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 412 (476)
+-+-++.++++|... |+.||.++-..++.++.+.+-
T Consensus 134 HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccc
Confidence 334588899999854 999999999999999988775
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.32 E-value=11 Score=38.81 Aligned_cols=117 Identities=16% Similarity=0.132 Sum_probs=73.1
Q ss_pred HHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhh
Q 038936 300 ALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379 (476)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 379 (476)
-.+..-.+.|-+.+|+.++.--.+.-...|.+....+...+.+++|.-.|+..-+. .-.+.+|...|++.+
T Consensus 913 e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~ 983 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWRE 983 (1265)
T ss_pred HHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHH
Confidence 34444455666666666554333333345555666667778888888777654321 124567888899999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCCC
Q 038936 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKP 427 (476)
Q Consensus 380 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 427 (476)
|..+..++.. +-.--..+-..|+.-+...++.-+|-+++.+....|
T Consensus 984 ~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 984 ALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred HHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 8888765542 111112223667788889999999999888875444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.25 E-value=2.1 Score=32.81 Aligned_cols=62 Identities=18% Similarity=0.130 Sum_probs=38.4
Q ss_pred HHHHHHHHHHH---HhcCChhHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCChHHHHHHHHHccc
Q 038936 26 PSIYSSLIQFC---RQNRALEEGKKVHSHLKSSGFKPGVFIS-NCLLDMYAKCGNISDAQTLFDEMQE 89 (476)
Q Consensus 26 ~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 89 (476)
..+.+.|+... .+.++.+++..++..+.-. .|..... ..-...+...|++.+|+.+|+++.+
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34445555433 5667888888888877663 3433322 2223445677888888888888765
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.24 E-value=9.2 Score=37.67 Aligned_cols=144 Identities=11% Similarity=-0.049 Sum_probs=70.1
Q ss_pred hhhHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 038936 311 VENSKKVFNGMPR--PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 311 ~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 388 (476)
..++...++.... .+......-+......++++.+...+..|.... .-...-...+.+++...|+.++|...|+++.
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444444332 133333333444445666666666665553321 1223333445555555666666666666543
Q ss_pred Hhc-----------CCCCC------hh--------hHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcC
Q 038936 389 EKH-----------GLTYT------AD--------HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHG 443 (476)
Q Consensus 389 ~~~-----------~~~~~------~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 443 (476)
... |.++. +. .-..-+..+...|...+|...+..+....+......+.......|
T Consensus 374 ~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g 453 (644)
T PRK11619 374 QQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQ 453 (644)
T ss_pred cCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Confidence 211 11100 00 011223455666777777777766532344444555555555667
Q ss_pred ChHHHHHHHHHH
Q 038936 444 NLDLAKRAAEAL 455 (476)
Q Consensus 444 ~~~~A~~~~~~~ 455 (476)
.++.++....+.
T Consensus 454 ~~~~ai~~~~~~ 465 (644)
T PRK11619 454 WWDLSVQATIAG 465 (644)
T ss_pred CHHHHHHHHhhc
Confidence 777777665543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=9.8 Score=37.51 Aligned_cols=114 Identities=11% Similarity=0.035 Sum_probs=52.4
Q ss_pred cCChHHHHHHHHHHHHcC-CCCcH--HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhh
Q 038936 339 NGMPDKALEYFELLLKSG-TQPDH--IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415 (476)
Q Consensus 339 ~~~~~~A~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 415 (476)
..+.+.|...+....... ..+.. .....++......+..+++...+...... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 344566666666653332 21111 12223322222322244555555443321 1233334444444446666666
Q ss_pred HHHHHhhCCC--CCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038936 416 AEDVISKMPM--KPDKFLWASLLGGCRIHGNLDLAKRAAEAL 455 (476)
Q Consensus 416 A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 455 (476)
+...+..|+. .....-..-+++++...|+.++|...|+++
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666631 112222233444545567777777776665
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.06 E-value=1.3 Score=37.72 Aligned_cols=78 Identities=17% Similarity=0.271 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH----hcCCCCChhhHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE----KHGLTYTADHYACI 403 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l 403 (476)
++..++..+...|+.+.+.+.++++.... +-+...|..++.+|...|+...|+..|+++.. ..|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45556666677777777777777777654 34556677777777777777777777776554 33666666555554
Q ss_pred HHH
Q 038936 404 VDL 406 (476)
Q Consensus 404 ~~~ 406 (476)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.01 E-value=5.6 Score=34.51 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=55.9
Q ss_pred hhcCCHHHHHHHHHhcC----CCCHHHHHHH-------HHHHHhcC-ChhHHHHHHHHHHHc--------CCCCCh----
Q 038936 6 CNQRRLKEALQILHQIS----HPSPSIYSSL-------IQFCRQNR-ALEEGKKVHSHLKSS--------GFKPGV---- 61 (476)
Q Consensus 6 ~~~~~~~~A~~~~~~~~----~~~~~~~~~l-------~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~---- 61 (476)
.++|+++.|..++.++. ..++.....+ .......+ +++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888774 2233222222 22233445 777777666665432 111221
Q ss_pred -hhHHHHHHHHHhcCChH---HHHHHHHHccc--cc-chHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 038936 62 -FISNCLLDMYAKCGNIS---DAQTLFDEMQE--RD-VCSYNTMISGFTKGGSLEQARNLFDEMPQ 120 (476)
Q Consensus 62 -~~~~~l~~~~~~~g~~~---~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 120 (476)
.++..++.+|...+..+ +|..+++.+.. |+ +..+..-+..+.+.++.+++.+.+.+|..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 23334444454444433 33333333322 22 33444445555555555555555555543
|
It is also involved in sporulation []. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.99 E-value=1.1 Score=38.12 Aligned_cols=100 Identities=14% Similarity=0.186 Sum_probs=65.0
Q ss_pred CCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC-CCh-----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH
Q 038936 290 GYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-PDL-----VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV 363 (476)
Q Consensus 290 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 363 (476)
|.+....+...++..-....+++.++..+-++.. |+. .+-...++ ++-.-++++++.++..=+.-|+.||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchhh
Confidence 4455555555666666666777777777666653 211 01111222 2223366788888877778888888888
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 364 FVGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 364 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
+..+++.+.+.+++..|..+...+..+
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888888877776654
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.42 Score=37.19 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=25.3
Q ss_pred CCCc-HHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCCCchhHHHH
Q 038936 425 MKPD-KFLWASLLGGCRIH-----------GNLDLAKRAAEALFEIEPENPATYVTM 469 (476)
Q Consensus 425 ~~p~-~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~l 469 (476)
+.|+ ..++..++.++... .-+++|...|+++.+.+|+|......|
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 4454 34555555555432 226777778888888999886554444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.28 Score=26.10 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344455555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.65 E-value=21 Score=40.10 Aligned_cols=367 Identities=14% Similarity=0.083 Sum_probs=175.5
Q ss_pred HHHHHHhcCChHHHHHHHHHc----cccc--chHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCcchHHHHHHHHHhcCCh
Q 038936 67 LLDMYAKCGNISDAQTLFDEM----QERD--VCSYNTMISGFTKGGSLEQARNLFDE-MPQRDNFSWTAMISGYVRYNQP 139 (476)
Q Consensus 67 l~~~~~~~g~~~~A~~~~~~~----~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 139 (476)
+..+-.+++.+.+|...++.- .+.+ ...+..+...|..-++++....+... ...+ . ....|......|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~--s-l~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP--S-LYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc--c-HHHHHHHHHhhccH
Confidence 444555778888888888873 2211 22344444478888888877776663 2222 2 22334445667888
Q ss_pred hHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHH-HHHHHHHHHcCCCHHHHHHHHH
Q 038936 140 IEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVV-WSALSDMYGKCGSINEARQIFD 218 (476)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~ 218 (476)
..|...|+.+.+. .++...+++.++......+.++...-..+-..... ++.... ++.-+.+-.+.++++.......
T Consensus 1466 ~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 8888888888752 22335566666666666666666555444333221 222222 2333344466677776666554
Q ss_pred hhcccchhhHHHH--HHHHHhcCChhH--HHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc
Q 038936 219 KMVDRDVVSWTAM--IGRYFQEGRREE--GFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294 (476)
Q Consensus 219 ~~~~~~~~~~~~l--~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 294 (476)
+.+...|... +....+..+-+. -.+..+.+.+.-+.| +.+++..|.+
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy------------------ 1593 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSY------------------ 1593 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchH------------------
Confidence 4444444433 222222211111 111222221111000 0011111111
Q ss_pred hhhHHHHHHHhhhcCChhhHHHHHccCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHH-HHHcCCCC-----cHHH
Q 038936 295 SFAASALVHMYSKCGNVENSKKVFNGMPR-----PDLVSWTSLIAGYAQNGMPDKALEYFEL-LLKSGTQP-----DHIV 363 (476)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~-----~~~~ 363 (476)
...|..++..+.-+. .+...+.+..... .+..-|..-+..=....+..+-+--+++ +......| -..+
T Consensus 1594 ~~~Y~~~~kLH~l~e-l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~ 1672 (2382)
T KOG0890|consen 1594 VRSYEILMKLHLLLE-LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGEC 1672 (2382)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHH
Confidence 122222332222211 1111111122211 1111222222111111111111111111 11111111 2346
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC--CCCCc--------HHHHH
Q 038936 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM--PMKPD--------KFLWA 433 (476)
Q Consensus 364 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~--------~~~~~ 433 (476)
|...++...+.|.++.|...+-.+.+. + . +..+--.++.+...|+...|+.++++. ...|+ +..-+
T Consensus 1673 wLqsAriaR~aG~~q~A~nall~A~e~-r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n 1748 (2382)
T KOG0890|consen 1673 WLQSARIARLAGHLQRAQNALLNAKES-R-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVN 1748 (2382)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhhhc-c-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhh
Confidence 777777778889998888877777654 2 3 344666778888899999998888764 11111 11111
Q ss_pred HHHHH--------HH-hcCC--hHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 434 SLLGG--------CR-IHGN--LDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 434 ~l~~~--------~~-~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
..+.. |. ..|+ -+.-++.|..+.+..|+....|..||.-|
T Consensus 1749 ~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1749 LLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred hhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 11111 11 2243 44567888888899998778888888544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.38 E-value=5.8 Score=33.14 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=25.0
Q ss_pred HHhcCChhHHHHHHHHHHHcC--CCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHh
Q 038936 235 YFQEGRREEGFALFSELIKSG--IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289 (476)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 289 (476)
-.+.|++++|.+.|+.+...- -+-...+...++.++.+.++++.|....++..+.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 344455555555555554331 0112223333344444555555555555555444
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.34 E-value=6.9 Score=33.90 Aligned_cols=125 Identities=12% Similarity=-0.054 Sum_probs=63.1
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC-chhhHHHHHHHHHHhcCCCCChhhHHH
Q 038936 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG-LVDKGLQYFHSIKEKHGLTYTADHYAC 402 (476)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ 402 (476)
++..+-...+.++.+.++ .+++..+-.+.+. ++...-...+.++...+ +...+...+..+.. .++..+-..
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~ 211 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIE 211 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHH
Confidence 344444445555555554 4455555555542 33334344444444432 13345555555442 345555555
Q ss_pred HHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 403 IVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 403 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
.+.++.+.|+ ..|+..+-+.-..++ .....+.++...|+. +|...+.++++.+|
T Consensus 212 A~~aLg~~~~-~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 212 AIIGLALRKD-KRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHccCC-hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 6666666666 344444444321233 233455566666663 57777777777666
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.23 E-value=2.5 Score=36.77 Aligned_cols=127 Identities=13% Similarity=0.162 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHHc--CC----CHHHHHHHHHhhccc-------chhhHHHHHHHHHhcCC--
Q 038936 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYGK--CG----SINEARQIFDKMVDR-------DVVSWTAMIGRYFQEGR-- 240 (476)
Q Consensus 176 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~-- 240 (476)
+....+++.+.+.|+..+..+|.+..-.... .. ...+|..+|+.|.+. +-.++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3344555566666666555544432222222 11 245666777777542 22233333222 2222
Q ss_pred --hhHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhcccc--HHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 038936 241 --REEGFALFSELIKSGIRPNA--FTFAGVLNACADHAA--EELGKQVHGYMTRIGYDPYSFAASALVHM 304 (476)
Q Consensus 241 --~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (476)
.+.+..+|+.+.+.|+..+. .....++..+....+ ...+..+++.+.+.|+++....|..+.-.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 34566777777777765543 233333333322222 44777888888888888777766655433
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.20 E-value=8 Score=37.59 Aligned_cols=193 Identities=19% Similarity=0.279 Sum_probs=105.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----------hhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchh
Q 038936 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA----------FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296 (476)
Q Consensus 227 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 296 (476)
+-..++-.|....+++..+++.+.+... ||. +.|...++---+.|+-+.|....-.+.+..-+..+.
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 4455566677777788888887777653 322 123334444445677777777766666553232222
Q ss_pred hHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH---HHHHHHHHhc
Q 038936 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIV---FVGVLTACTH 373 (476)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~ 373 (476)
+||-+|++ |+.|- +-..|...+..+.|++.|++.-+ +.|+..+ +..|+.+
T Consensus 280 -------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a--- 332 (1226)
T KOG4279|consen 280 -------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA--- 332 (1226)
T ss_pred -------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH---
Confidence 23333332 11110 11224444556778888888777 4565543 3333322
Q ss_pred cC-chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHH
Q 038936 374 AG-LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAA 452 (476)
Q Consensus 374 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 452 (476)
.| .++...++ +.+ -..|...+.+.|.+++-.+.++-. + .+.+-...+++.+|++..
T Consensus 333 aG~~Fens~El-q~I------------gmkLn~LlgrKG~leklq~YWdV~-------~---y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 333 AGEHFENSLEL-QQI------------GMKLNSLLGRKGALEKLQEYWDVA-------T---YFEASVLANDYQKAIQAA 389 (1226)
T ss_pred hhhhccchHHH-HHH------------HHHHHHHhhccchHHHHHHHHhHH-------H---hhhhhhhccCHHHHHHHH
Confidence 22 22322222 111 122445567788777776666532 1 233344568899999999
Q ss_pred HHHHHcCCCCchhHHHHHHh
Q 038936 453 EALFEIEPENPATYVTMANI 472 (476)
Q Consensus 453 ~~~~~~~p~~~~~~~~l~~~ 472 (476)
+.|.++.|+....-..+.++
T Consensus 390 e~mfKLk~P~WYLkS~meni 409 (1226)
T KOG4279|consen 390 EMMFKLKPPVWYLKSTMENI 409 (1226)
T ss_pred HHHhccCCceehHHHHHHHH
Confidence 99999998776555554443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.12 E-value=2.5 Score=39.63 Aligned_cols=132 Identities=15% Similarity=0.075 Sum_probs=80.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHH
Q 038936 63 ISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEA 142 (476)
Q Consensus 63 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 142 (476)
..+.+...+.+.|..++|+++-.. |+. -.....+.|+++.|.++..+. .+..-|..|.++....|++..|
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D---~d~-----rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA 685 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTD---PDQ-----RFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLA 685 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCC---hhh-----hhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhH
Confidence 445566667777777777654322 211 133445678888888776554 3556688888888888888888
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhh
Q 038936 143 LDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220 (476)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 220 (476)
.+.|..... |..|+-.+...|+.+....+-....+.|. .|.-.-+|...|+++++.+++..-
T Consensus 686 ~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 686 SECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 888887765 45555555556665555555555444441 122233455567777666665443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=92.04 E-value=13 Score=36.56 Aligned_cols=50 Identities=10% Similarity=-0.089 Sum_probs=34.5
Q ss_pred hccCchhhHHHHHHHHHHhcCCCCC-------hhhHHHHHHHHHhcCChhhHHHHHh
Q 038936 372 THAGLVDKGLQYFHSIKEKHGLTYT-------ADHYACIVDLLARSGRFHEAEDVIS 421 (476)
Q Consensus 372 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~ 421 (476)
+-.+++..|...++.+.....-.|+ +..+...+-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 4467888898888888764332222 3334445555667899999999997
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.86 E-value=14 Score=36.37 Aligned_cols=21 Identities=33% Similarity=0.699 Sum_probs=15.2
Q ss_pred HHhcCChhhHHHHHhhCCCCC
Q 038936 407 LARSGRFHEAEDVISKMPMKP 427 (476)
Q Consensus 407 ~~~~g~~~~A~~~~~~~~~~p 427 (476)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 568899999999999986544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.78 E-value=8.2 Score=33.60 Aligned_cols=45 Identities=16% Similarity=0.184 Sum_probs=19.3
Q ss_pred hhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHH
Q 038936 306 SKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFE 350 (476)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 350 (476)
..+|-+++|++.-++..+ .|.-.-.+....+...|++.++.++..
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 344445555444444433 122233334444444455555544443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.27 Score=37.56 Aligned_cols=125 Identities=14% Similarity=0.189 Sum_probs=81.1
Q ss_pred ChhhhhhcCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038936 1 AIDILCNQRRLKEALQILHQIS----HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76 (476)
Q Consensus 1 ~i~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 76 (476)
+|+.+.+.+.++....+++.+. ..++...+.++..|++.++.+...++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 5778888889999888888874 456888999999999998888888887721 11333456777778888
Q ss_pred hHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 038936 77 ISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139 (476)
Q Consensus 77 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 139 (476)
+++|.-++..+...+.. +..+...++++.|.+.+.+. .++..|..+++.+...+..
T Consensus 86 ~~~a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCcc
Confidence 88887777664432111 11123344555555444433 3567788888887766543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.49 Score=25.04 Aligned_cols=26 Identities=42% Similarity=0.639 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 329 WTSLIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 329 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
|..+...+...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444455555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.20 E-value=2.7 Score=35.92 Aligned_cols=60 Identities=15% Similarity=0.392 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038936 194 EVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSELIK 253 (476)
Q Consensus 194 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 253 (476)
..++..++..+...|+.+.+...++++... +...|..++.+|.+.|+...|+..|+++.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345566666677777777777777666543 334566677777777777777776666654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.92 E-value=1.7 Score=34.56 Aligned_cols=95 Identities=9% Similarity=0.085 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChhhHHHHHhhCC---CCC---cHHHHH
Q 038936 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT--ADHYACIVDLLARSGRFHEAEDVISKMP---MKP---DKFLWA 433 (476)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p---~~~~~~ 433 (476)
..+..++..|.+.|+.+.|.+.|.++.+. ...+. ..++..+++...-.|++..+...+.++. ..+ +...-.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 36778889999999999999999998875 33333 4456778889999999999998888762 121 211111
Q ss_pred HHHH--HHHhcCChHHHHHHHHHHHH
Q 038936 434 SLLG--GCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 434 ~l~~--~~~~~g~~~~A~~~~~~~~~ 457 (476)
.... .+...|++..|-+.|-....
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 1222 24566899998888766654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.20 E-value=14 Score=33.38 Aligned_cols=62 Identities=16% Similarity=0.281 Sum_probs=40.4
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHhhccc-------chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038936 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDR-------DVVSWTAMIGRYFQEGRREEGFALFSELIK 253 (476)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 253 (476)
....++..++..+.+.|+++.|...+..+.+. .+.....-++..-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456667777777777777777777776542 233344445666667777777777776665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.04 E-value=3.5 Score=33.04 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChhhH
Q 038936 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL--TYTADHYACIVDLLARSGRFHEA 416 (476)
Q Consensus 343 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 416 (476)
+.|...|-.+...+.--++.....|+. |....+.+++++++.++.+..+- .++++.+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 556666666665554333333333333 33355666666666666653221 34556666666666666666555
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.91 E-value=2.8 Score=29.12 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 038936 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405 (476)
Q Consensus 344 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (476)
+..+-+..+....+.|++......+++|.+.+++..|+++++.+..+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455556666667788899999999999999999999999998888875433 235666543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.83 E-value=9.5 Score=31.00 Aligned_cols=160 Identities=9% Similarity=-0.011 Sum_probs=81.5
Q ss_pred CchhhHHHHHHHhhhcCChhhHHHHHccCCCCChh-hHHHH--HHHHHhcCChHHHHHHHHHHHHcCCCCcH--HHHHHH
Q 038936 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLV-SWTSL--IAGYAQNGMPDKALEYFELLLKSGTQPDH--IVFVGV 367 (476)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l 367 (476)
.-+.+||.+.-.+...|+++.|.+.|+...+-|+. -|..+ .-++--.|++.-|.+-+...-..+.. |+ ..|..+
T Consensus 97 ~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~-DPfR~LWLYl 175 (297)
T COG4785 97 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN-DPFRSLWLYL 175 (297)
T ss_pred CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCC-ChHHHHHHHH
Confidence 34567777777778888888888888887765443 22222 22234467777777777666654321 22 122222
Q ss_pred HHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHH-HHHhcCChhhHHHHHhhC-CCC-----CcHHHHHHHHHHHH
Q 038936 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD-LLARSGRFHEAEDVISKM-PMK-----PDKFLWASLLGGCR 440 (476)
Q Consensus 368 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~-----p~~~~~~~l~~~~~ 440 (476)
. ...-++.+|..-+.+-.+ ..+.+-|...+. .|...=..+.+.+-...- ... .-..+|-.++.-+.
T Consensus 176 ~---E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 176 N---EQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred H---HhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Confidence 1 233445555543332222 123333333222 222111112222222221 100 11235666777777
Q ss_pred hcCChHHHHHHHHHHHHcCC
Q 038936 441 IHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 441 ~~g~~~~A~~~~~~~~~~~p 460 (476)
..|+.++|..+|+-++..+-
T Consensus 249 ~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 249 SLGDLDEATALFKLAVANNV 268 (297)
T ss_pred ccccHHHHHHHHHHHHHHhH
Confidence 78888888888888776543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.81 E-value=0.62 Score=36.26 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 445 LDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 445 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
+++|+.-|++++.++|+...++..+|++|.+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 5678888999999999999999999999864
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.66 E-value=3.4 Score=28.41 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHH
Q 038936 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404 (476)
Q Consensus 343 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 404 (476)
-++.+-++.+....+.|++......+++|.+.+|+..|+.+++.++.+.+. +...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 345556666666778888888888888888888888888888887765433 334555543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.64 E-value=8.4 Score=30.08 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHH
Q 038936 23 HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGF 102 (476)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 102 (476)
++++..+..+++.+.+.|++.. +..+...++-+|.......+-.+ .+....+.++--.|..+=...+..++..+
T Consensus 26 ~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkRL~~~~~~iievL 99 (167)
T PF07035_consen 26 PVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKRLGTAYEEIIEVL 99 (167)
T ss_pred CCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 7888999999999999998764 44556667777776655444332 23445555555555554444677788899
Q ss_pred HhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038936 103 TKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150 (476)
Q Consensus 103 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 150 (476)
...|++-+|.++.+....-+......++.+....+|..--..+|+-..
T Consensus 100 L~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 100 LSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999988766655666777788777777665555554444
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.14 E-value=8.1 Score=29.26 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 432 WASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
|..........|...+++.+.+.+..
T Consensus 96 Wr~~A~~~le~~~~~~a~~Lv~al~g 121 (153)
T TIGR02561 96 WHVHADEVLARDADADAVALVRALLG 121 (153)
T ss_pred HHHHHHHHHHhCCCHhHHHHHHHHhc
Confidence 44444444555555666666665553
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.91 E-value=1.1 Score=35.50 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=55.9
Q ss_pred HHHHHhcCChhhHHHHHhhC-C-CC-----CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 404 VDLLARSGRFHEAEDVISKM-P-MK-----PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 404 ~~~~~~~g~~~~A~~~~~~~-~-~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
+.-+.+.|++++|..-+..+ . .+ -....|..-+.+..+.+.++.|+.-..++++++|.+..+...-+.+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 44567899999999988875 1 11 134467777778889999999999999999999988877777776664
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=88.73 E-value=13 Score=34.01 Aligned_cols=122 Identities=14% Similarity=0.040 Sum_probs=64.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHH--HHHHHHHHH--hccCchhhHHHHHHHHHHhcCCC--CChhhHHHHHHHH
Q 038936 334 AGYAQNGMPDKALEYFELLLKSGTQPDHI--VFVGVLTAC--THAGLVDKGLQYFHSIKEKHGLT--YTADHYACIVDLL 407 (476)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~ 407 (476)
..+...+++..|.++++.+... ++++.. .+..+..+| ...-++.+|.+.++..... ... .....+..+....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~-~~~l~~~~~~l~~~~~~~ 216 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR-DKALNQEREGLKELVEVL 216 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-hhhhHhHHHHHHHHHHHH
Confidence 3456888999999999999886 555554 344444544 3566788999998887754 111 1111222222222
Q ss_pred HhcCChhhHHHHHhhCCCCCcH-HHHHHHHHHHH--hcCChHHHHHHHHHHHH
Q 038936 408 ARSGRFHEAEDVISKMPMKPDK-FLWASLLGGCR--IHGNLDLAKRAAEALFE 457 (476)
Q Consensus 408 ~~~g~~~~A~~~~~~~~~~p~~-~~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 457 (476)
.....+.........-..++.. ....-+..+.. ..|+++.|...+-++++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 217 KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2211111111111111111211 22233333333 25899999888877776
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=88.65 E-value=0.85 Score=22.53 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=8.4
Q ss_pred HHHHHHhcCChhhHHHHH
Q 038936 403 IVDLLARSGRFHEAEDVI 420 (476)
Q Consensus 403 l~~~~~~~g~~~~A~~~~ 420 (476)
++..+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 444444444444444444
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.55 E-value=12 Score=30.45 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=18.1
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 363 VFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 363 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
||-.+.+-+...|+.++|..+|+-++.
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 566666667777777777777666554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.36 E-value=7 Score=33.67 Aligned_cols=99 Identities=15% Similarity=0.227 Sum_probs=73.8
Q ss_pred cCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc---------chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038936 188 TGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---------DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP 258 (476)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 258 (476)
.|.+....+...++..-....+++.++..+-.+.+. ...+|.. .+-.-++++++.++..=++-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir----lllky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR----LLLKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH----HHHccChHHHHHHHhCcchhcccc
Confidence 355556666666666666678888888888777542 1222322 233446778888888888899999
Q ss_pred CHhhHHHHHHHHhccccHHHHHHHHHHHHHhC
Q 038936 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290 (476)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 290 (476)
|.+++..+|..+.+.+++..|.++.-.|....
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888877664
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=88.22 E-value=30 Score=34.70 Aligned_cols=191 Identities=16% Similarity=0.055 Sum_probs=102.1
Q ss_pred HhccccHHHHHHHHHHHHHhCCCCch----h---hHHHHH-HHhhhcCChhhHHHHHccCCC--------CChhhHHHHH
Q 038936 270 CADHAAEELGKQVHGYMTRIGYDPYS----F---AASALV-HMYSKCGNVENSKKVFNGMPR--------PDLVSWTSLI 333 (476)
Q Consensus 270 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~---~~~~l~-~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~ 333 (476)
.....++.+|..++.++...-..|+. . .++.+- ......|++++|.++-+.... +....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888888888877655222221 1 122222 234567888888877665542 4556777788
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHH---HHHHHH--HHHhccCchh--hHHHHHHHHHHhcCCCC-----ChhhHH
Q 038936 334 AGYAQNGMPDKALEYFELLLKSGTQPDHI---VFVGVL--TACTHAGLVD--KGLQYFHSIKEKHGLTY-----TADHYA 401 (476)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~--~~~~~~~~~~--~a~~~~~~~~~~~~~~~-----~~~~~~ 401 (476)
.+..-.|++++|..+.....+..-.-+.. .+..+. ..+..+|+.. +....+......+.... -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888999999998887766542122222 222222 2355667333 22333333332211111 122333
Q ss_pred HHHHHHHh-cCChhhHHHHHhhC-CCCCcH--H--HHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 402 CIVDLLAR-SGRFHEAEDVISKM-PMKPDK--F--LWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 402 ~l~~~~~~-~g~~~~A~~~~~~~-~~~p~~--~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
.+..++.+ .+...++..-++-- ...|.. . .+..++......|+.++|...++++..+.-
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 34444444 11122222222221 112222 2 223567777888999999999999887543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.72 E-value=8.4 Score=36.43 Aligned_cols=103 Identities=14% Similarity=0.116 Sum_probs=63.3
Q ss_pred HHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHH
Q 038936 204 YGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVH 283 (476)
Q Consensus 204 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 283 (476)
..+.|+++.|.++..+. .+..-|..|..+....+++..|.+.|..... +..|+-.+...|+.+....+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 34567777777665433 3445677777777777777777777766543 334555555666666555555
Q ss_pred HHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC
Q 038936 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323 (476)
Q Consensus 284 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (476)
....+.| ..+ .-..+|...|+++++.+++.+-.+
T Consensus 716 ~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 716 SLAKKQG-KNN-----LAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred HHHHhhc-ccc-----hHHHHHHHcCCHHHHHHHHHhcCc
Confidence 5555555 222 233456667888888877766544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.70 E-value=15 Score=30.57 Aligned_cols=22 Identities=9% Similarity=-0.064 Sum_probs=13.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 038936 129 MISGYVRYNQPIEALDLYRMMQ 150 (476)
Q Consensus 129 l~~~~~~~~~~~~a~~~~~~~~ 150 (476)
-..+|...+++++|...+.+..
T Consensus 37 AAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHH
Confidence 3445555666666666665554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.68 E-value=29 Score=33.78 Aligned_cols=80 Identities=15% Similarity=0.055 Sum_probs=37.5
Q ss_pred chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc----CChhhHHHHHhhCCCCCcHHHHHHHHHHHHhc-C--ChHHH
Q 038936 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS----GRFHEAEDVISKMPMKPDKFLWASLLGGCRIH-G--NLDLA 448 (476)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g--~~~~A 448 (476)
+...+...+.+.... -+......+.+.|..- .+.+.|...+.....++ ....-.+...+-.. | ....|
T Consensus 454 ~~~~~~~~~~~a~~~----g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g~~~~~~a 528 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQ----GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEGIKVLHLA 528 (552)
T ss_pred chhHHHHHHHHHHhc----cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcCcchhHHH
Confidence 344455555544432 2333344455444332 23566666666654344 33333333222211 1 15667
Q ss_pred HHHHHHHHHcCC
Q 038936 449 KRAAEALFEIEP 460 (476)
Q Consensus 449 ~~~~~~~~~~~p 460 (476)
.+.++++.+.++
T Consensus 529 ~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 529 KRYYDQASEEDS 540 (552)
T ss_pred HHHHHHHHhcCc
Confidence 777777666554
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=87.32 E-value=1.5 Score=22.71 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=25.1
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 443 GNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 443 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
|+.+.+..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 577889999999999999888888776643
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.27 E-value=1.6 Score=24.36 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLL 353 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 353 (476)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34455555555555555555555543
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=87.21 E-value=4.1 Score=37.19 Aligned_cols=124 Identities=17% Similarity=0.182 Sum_probs=79.5
Q ss_pred HHHhcCChHHHHHH-HHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 038936 335 GYAQNGMPDKALEY-FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413 (476)
Q Consensus 335 ~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 413 (476)
--...|+...|-+- +..+....-.|+...+. ...+...|+++.+.+.+...... +.....+...+++...+.|++
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhH
Confidence 34456676665544 44444433345444333 33456789999998887766542 344556677888888899999
Q ss_pred hhHHHHHhhC-CCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 414 HEAEDVISKM-PMK-PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 414 ~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
++|...-+.| +.+ -++.............|-++++...+++.+.++|+.
T Consensus 374 ~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 374 REALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 9999888876 211 133333333333455688899999999999988763
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.20 E-value=3.9 Score=32.80 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=44.9
Q ss_pred HHhcCChHHHHHHHHHccc----ccchHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCCcchHHHHHHHHHhcCCh
Q 038936 71 YAKCGNISDAQTLFDEMQE----RDVCSYNTMISGFTKGGSLEQARNLFDEMP-------QRDNFSWTAMISGYVRYNQP 139 (476)
Q Consensus 71 ~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~ 139 (476)
..+.|+ +.|++.|-.+.. .++.....|...|. ..|.+++..++.+.. ..|+..+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 334454 556666666553 24455555555555 567777777766554 23677788888888888888
Q ss_pred hHHH
Q 038936 140 IEAL 143 (476)
Q Consensus 140 ~~a~ 143 (476)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7764
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.07 E-value=2.8 Score=36.39 Aligned_cols=87 Identities=14% Similarity=0.062 Sum_probs=55.3
Q ss_pred HHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCch
Q 038936 301 LVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377 (476)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 377 (476)
-..-|.++|.+++|+.+|..... | |++.+..-..+|.+.+.+..|+.-....+..+ ..-...|..-+.+-...|..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 34567888888888888887664 4 77788888888888888887777766665532 11112333333333444555
Q ss_pred hhHHHHHHHHH
Q 038936 378 DKGLQYFHSIK 388 (476)
Q Consensus 378 ~~a~~~~~~~~ 388 (476)
.+|.+-++.++
T Consensus 182 ~EAKkD~E~vL 192 (536)
T KOG4648|consen 182 MEAKKDCETVL 192 (536)
T ss_pred HHHHHhHHHHH
Confidence 55555555555
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.69 E-value=27 Score=32.42 Aligned_cols=103 Identities=16% Similarity=0.115 Sum_probs=58.4
Q ss_pred HHhhhcCChhhHHHHHccCCC---------C---ChhhHHHHHHHHHhcCChHHHHHHHHHHHH-------cCCCCcH--
Q 038936 303 HMYSKCGNVENSKKVFNGMPR---------P---DLVSWTSLIAGYAQNGMPDKALEYFELLLK-------SGTQPDH-- 361 (476)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~---------~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~-- 361 (476)
+.+...|++.+|.+++....- | .-..||.+...+.+.|.+..+..+|.+.++ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 345556677777666654321 1 112346666666666666666666666553 3444422
Q ss_pred ---------HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 038936 362 ---------IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408 (476)
Q Consensus 362 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 408 (476)
.+|+ ..-.|...|++-.|.++|.+.... +..++..|-.++++|.
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHH
Confidence 1233 333456677777777777777764 4555666777776663
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=86.29 E-value=2 Score=22.35 Aligned_cols=24 Identities=17% Similarity=0.427 Sum_probs=13.4
Q ss_pred HHHHHhccCchhhHHHHHHHHHHh
Q 038936 367 VLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 367 l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
+..++.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 444555556666666666655544
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.27 E-value=5.9 Score=33.92 Aligned_cols=64 Identities=14% Similarity=0.060 Sum_probs=39.3
Q ss_pred HHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 038936 403 IVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATY 466 (476)
Q Consensus 403 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 466 (476)
+-.+|.+.++++.|+++.+.+ ...| ++.-+.--+..|.+.|.+..|..-++..++..|+++.+-
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 445566666666666666664 3334 344455555556667777777777777777777666544
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.02 E-value=4.8 Score=27.73 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcc
Q 038936 44 EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88 (476)
Q Consensus 44 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 88 (476)
++.+-++.+....+.|++....+.+++|-+.+++..|.++|+.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344455555555555666666666666666666666666666544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=85.91 E-value=2.3 Score=22.37 Aligned_cols=27 Identities=41% Similarity=0.507 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 355556666666666666666666655
|
... |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=85.58 E-value=22 Score=30.44 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=44.4
Q ss_pred chhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHH-HHHHHHHh
Q 038936 294 YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVF-VGVLTACT 372 (476)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 372 (476)
++.....+...|.+.|++.+|+..|-....++...+..++......|...+ ...| ...+--|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e----------------~dlfi~RaVL~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSE----------------ADLFIARAVLQYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS------------------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcc----------------hhHHHHHHHHHHH
Confidence 566777788888999999888877655544444333223322222222222 2222 22223356
Q ss_pred ccCchhhHHHHHHHHHHh
Q 038936 373 HAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 373 ~~~~~~~a~~~~~~~~~~ 390 (476)
..++...|...+....++
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 678888888887777654
|
; PDB: 3LKU_E 2WPV_G. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.32 E-value=4.7 Score=28.07 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcc
Q 038936 44 EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88 (476)
Q Consensus 44 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 88 (476)
+..+-++.+-...+.|++....+.+.+|-+.+++..|.++|+.++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344555555555566666666666666666666666666666655
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.98 E-value=22 Score=29.98 Aligned_cols=51 Identities=6% Similarity=0.044 Sum_probs=31.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhh---HHHHHHHHhccccHHHHHHHHHHHH
Q 038936 237 QEGRREEGFALFSELIKSGIRPNAFT---FAGVLNACADHAAEELGKQVHGYMT 287 (476)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~ 287 (476)
+..++++|+.-|.+..+......... ...++....+.+++++....+.++.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 34567788888888776532333333 3345556667777777777766654
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.90 E-value=6.7 Score=31.86 Aligned_cols=58 Identities=9% Similarity=0.066 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcc
Q 038936 30 SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88 (476)
Q Consensus 30 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 88 (476)
+..++.+.+.++..+++...++-++.. +-|...-..+++.++-.|++++|...++-..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 344566667777777777777666654 2355555667777777777777777666554
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.62 E-value=19 Score=28.84 Aligned_cols=87 Identities=11% Similarity=0.009 Sum_probs=52.7
Q ss_pred HhccccHHHHHHHHHHHHHhCCCCc--hhhHHHHHHHhhhcCChhhHHHHHccCCCCChhh--HHHHHHHHHhcCChHHH
Q 038936 270 CADHAAEELGKQVHGYMTRIGYDPY--SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVS--WTSLIAGYAQNGMPDKA 345 (476)
Q Consensus 270 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A 345 (476)
+...++++.|...++.........+ ..+--.|.......|.+++|+..++....++-.. ...-...+...|+.++|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred HHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHH
Confidence 4455566666655554443211110 1111234566677788888888888777664443 44445668888888888
Q ss_pred HHHHHHHHHcC
Q 038936 346 LEYFELLLKSG 356 (476)
Q Consensus 346 ~~~~~~~~~~~ 356 (476)
..-|++.++.+
T Consensus 179 r~ay~kAl~~~ 189 (207)
T COG2976 179 RAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHcc
Confidence 88888887765
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=84.48 E-value=11 Score=31.94 Aligned_cols=86 Identities=14% Similarity=0.012 Sum_probs=48.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc-c---cchHHHHHHHHHH---
Q 038936 31 SLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE-R---DVCSYNTMISGFT--- 103 (476)
Q Consensus 31 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~---~~~~~~~l~~~~~--- 103 (476)
.-|+++...+++.+++.+.-+--+.--+....+...-|-.|.+.|.+..+.++-....+ | +...|.+++..|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 34577777777777766554443321111223333344556677777777766665543 2 2234665555544
Q ss_pred --hcCCHHHHHHHHh
Q 038936 104 --KGGSLEQARNLFD 116 (476)
Q Consensus 104 --~~g~~~~a~~~~~ 116 (476)
=.|.+++|+++..
T Consensus 168 LlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 168 LLPLGHFSEAEELVV 182 (309)
T ss_pred HhccccHHHHHHHHh
Confidence 3688888887773
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.15 E-value=83 Score=35.86 Aligned_cols=63 Identities=6% Similarity=-0.024 Sum_probs=49.2
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 397 ADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
.++|...++...++|+++.|...+-.+....-+..+...+.-++..|+...|+.++++.++.+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 567888888888999999999887776322234455566677899999999999999999743
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=84.02 E-value=12 Score=26.06 Aligned_cols=86 Identities=21% Similarity=0.229 Sum_probs=55.6
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038936 175 LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS 254 (476)
Q Consensus 175 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 254 (476)
.++|..+-+.+...+-. ...+-..-+..+...|++++|..+.+...-||...|-.|- -.+.|..++....+.++..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALC--EWRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHH--HHhhccHHHHHHHHHHHHhC
Confidence 44555555444433311 3333334456677889999999999888888888886653 34667777777777778777
Q ss_pred CCCCCHhhHH
Q 038936 255 GIRPNAFTFA 264 (476)
Q Consensus 255 ~~~~~~~~~~ 264 (476)
| .|....|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 6 55555554
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.61 E-value=45 Score=32.43 Aligned_cols=257 Identities=14% Similarity=0.112 Sum_probs=117.3
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHHHH--HH-HHcCCCHHHHHHHHHhhcc--------cchhhHHHHHHHHHhcC----
Q 038936 175 LRLGKEIHGYIMRTGFDSDEVVWSALS--DM-YGKCGSINEARQIFDKMVD--------RDVVSWTAMIGRYFQEG---- 239 (476)
Q Consensus 175 ~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~---- 239 (476)
...+..+++...+.|.. .......++ .+ +....+.+.|+.+|+...+ -++.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 45566777776666622 222222222 22 3355677778777777643 12334455555555532
Q ss_pred -ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc-cccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHH
Q 038936 240 -RREEGFALFSELIKSGIRPNAFTFAGVLNACAD-HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317 (476)
Q Consensus 240 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 317 (476)
+.+.|..++.+..+.| .|+.......+.-... ..+...|.++|....+.|..+
T Consensus 307 ~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~------------------------ 361 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL------------------------ 361 (552)
T ss_pred ccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH------------------------
Confidence 4455666666666665 3443333222221111 234456666666655555221
Q ss_pred HccCCCCChhhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCC
Q 038936 318 FNGMPRPDLVSWTSLIAGYA----QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393 (476)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 393 (476)
.+-.+..+|. ...+...|..++++.-+.| .|....-...+..+.. ++++.+.-.+..+.+. +.
T Consensus 362 ----------A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~ 428 (552)
T KOG1550|consen 362 ----------AIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GY 428 (552)
T ss_pred ----------HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hh
Confidence 1111111111 1234556666666666655 2221111112222233 4444444444433332 21
Q ss_pred CCChhhHHHHHHHH---Hh----cCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCC
Q 038936 394 TYTADHYACIVDLL---AR----SGRFHEAEDVISKMPMKPDKFLWASLLGGCRIH----GNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 394 ~~~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~ 462 (476)
......-..+.... .. ..+.+.+...+.+....-+......+...|... .+++.|...|.++-...
T Consensus 429 ~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--- 505 (552)
T KOG1550|consen 429 EVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--- 505 (552)
T ss_pred hHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---
Confidence 11110000010000 00 113444555555554444555555555554432 35777777777776655
Q ss_pred chhHHHHHHhh
Q 038936 463 PATYVTMANIY 473 (476)
Q Consensus 463 ~~~~~~l~~~y 473 (476)
+....+|++.+
T Consensus 506 ~~~~~nlg~~~ 516 (552)
T KOG1550|consen 506 AQALFNLGYMH 516 (552)
T ss_pred hHHHhhhhhHH
Confidence 66666666654
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=83.47 E-value=3.5 Score=23.65 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=15.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 332 LIAGYAQNGMPDKALEYFELLLKSG 356 (476)
Q Consensus 332 l~~~~~~~~~~~~A~~~~~~~~~~~ 356 (476)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4555666666666666666666543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=83.33 E-value=5.5 Score=21.66 Aligned_cols=31 Identities=19% Similarity=0.060 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCChHHHHHH--HHHHHHcCCCC
Q 038936 432 WASLLGGCRIHGNLDLAKRA--AEALFEIEPEN 462 (476)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~--~~~~~~~~p~~ 462 (476)
+-.++..+...|++++|+.+ |+-+..++|.|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 44566667788899999999 44777777754
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=82.89 E-value=32 Score=30.14 Aligned_cols=48 Identities=13% Similarity=0.286 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc--c----ccHHHHHHHHHHHHHh
Q 038936 242 EEGFALFSELIKSGIRPNAFTFAGVLNACAD--H----AAEELGKQVHGYMTRI 289 (476)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~ 289 (476)
++...+++.|.+.|++-+..++......... . .....+..+++.|.+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 3455667777777777776666543332222 1 2234566666666665
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.86 E-value=42 Score=31.47 Aligned_cols=93 Identities=10% Similarity=0.148 Sum_probs=62.0
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 038936 224 DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVH 303 (476)
Q Consensus 224 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 303 (476)
|....-+++..+..+..+.-...+..+|..-| .+...+..++++|... ..+.-..+++++.+..+ .+...-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44455667788888888888888888888865 5677888888888877 56777788888777653 23333334444
Q ss_pred HhhhcCChhhHHHHHccC
Q 038936 304 MYSKCGNVENSKKVFNGM 321 (476)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~ 321 (476)
.|-+ ++.+.+..+|.++
T Consensus 141 ~yEk-ik~sk~a~~f~Ka 157 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKA 157 (711)
T ss_pred HHHH-hchhhHHHHHHHH
Confidence 4444 5555555555443
|
|
| >cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat | Back alignment and domain information |
|---|
Probab=82.63 E-value=8.6 Score=25.95 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=15.2
Q ss_pred CCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 038936 106 GSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138 (476)
Q Consensus 106 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (476)
|+.+.|.+++..+. +.+..|..++.++...|.
T Consensus 50 g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 50 GNESGARELLKRIV-QKEGWFSKFLQALRETEH 81 (88)
T ss_pred CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCc
Confidence 44444444444444 444444444444444444
|
Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.18 E-value=44 Score=31.23 Aligned_cols=103 Identities=12% Similarity=0.192 Sum_probs=74.8
Q ss_pred CCcHHHH-HHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHH---HhcCChhhHHHHHhhC--CCCCcHHH
Q 038936 358 QPDHIVF-VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL---ARSGRFHEAEDVISKM--PMKPDKFL 431 (476)
Q Consensus 358 ~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~--~~~p~~~~ 431 (476)
.|+..|+ +.++.-+.+.|-..+|...+..+... .||+...|..+++.= ..+| ...+.+.++.+ ..-.|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHH
Confidence 4555554 45566677888889999999888863 466777777776653 2333 77788888876 23368888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCc
Q 038936 432 WASLLGGCRIHGNLDLAKRAAEALFE-IEPENP 463 (476)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~ 463 (476)
|...+.--..+|..+.+-.++.++++ ++|...
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~~ 565 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKTLQGESA 565 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHhhChhhh
Confidence 88888777788999999999988887 677543
|
|
| >PF13934 ELYS: Nuclear pore complex assembly | Back alignment and domain information |
|---|
Probab=80.99 E-value=16 Score=30.40 Aligned_cols=103 Identities=14% Similarity=0.152 Sum_probs=62.6
Q ss_pred HHHHHHHH--HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccc--cchHHHHHHHHHHh
Q 038936 29 YSSLIQFC--RQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQER--DVCSYNTMISGFTK 104 (476)
Q Consensus 29 ~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~ 104 (476)
|...++++ ...++++.|.+.+.. -.+.|+ ....++..+...|+.+.|+.+++.+..+ +......++.. ..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La 152 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSH---PSLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LA 152 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCC---CCCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HH
Confidence 44445444 455677777776622 122222 2224677777788888888888887653 22333444444 56
Q ss_pred cCCHHHHHHHHhcCCCCC-cchHHHHHHHHHhcC
Q 038936 105 GGSLEQARNLFDEMPQRD-NFSWTAMISGYVRYN 137 (476)
Q Consensus 105 ~g~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~~~ 137 (476)
++.+.+|...-+...++. ...+..++..+....
T Consensus 153 ~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred cCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 688888888887776642 446667776666444
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.83 E-value=8.6 Score=31.86 Aligned_cols=101 Identities=11% Similarity=0.002 Sum_probs=68.9
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHhc-----CCCCCh-----------hhHHHHHHHHHhcCChhhHHHHHhhC-CC
Q 038936 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKH-----GLTYTA-----------DHYACIVDLLARSGRFHEAEDVISKM-PM 425 (476)
Q Consensus 363 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 425 (476)
+...-..-+.+.|++.+|...|++++... .-.|.. ..+..+..++...|++-++++.-.++ ..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 44555666788999999999998765311 112322 22334556677778888888777775 44
Q ss_pred CC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 038936 426 KP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 426 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 463 (476)
.| ++..|-.-+.+....=+.++|..-+..+++++|.-.
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 44 566776667777777788889999999999988543
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.28 E-value=2.4 Score=36.16 Aligned_cols=77 Identities=8% Similarity=0.160 Sum_probs=47.7
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 038936 393 LTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWAS-LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469 (476)
Q Consensus 393 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 469 (476)
++.|+..|...+.-..+.|.+.+...++.++ ..+| |+..|-. ...-+...++++.+..++.+.++++|++|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 4455555665555555555666666666664 3344 4555533 22335566888888888888888888888776543
|
|
| >PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.14 E-value=22 Score=32.71 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=30.5
Q ss_pred HHHhhCCCCCcHH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 038936 418 DVISKMPMKPDKF--LWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 418 ~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 463 (476)
.+|...+..|... +++..+....+.+++.-|....++++++.|...
T Consensus 287 AYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 287 AYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 3444456666443 566777777888999999999999999998654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.8 bits (148), Expect = 3e-10
Identities = 20/169 (11%), Positives = 50/169 (29%), Gaps = 14/169 (8%)
Query: 9 RRLKEALQILHQISHPSPS--IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNC 66
+++ L+ + + SP + L+Q +L+ + +
Sbjct: 73 KQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLA 132
Query: 67 LLDMYAKCGNISDAQTLFDEMQER-------DVCSYNTMISGFTKGGSLEQARNLFDEMP 119
+ A L + + YN ++ G+ + G+ ++ + +
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 120 QR----DNFSWTAMISGYVRYNQPIEALDLY-RMMQNFENSVSNKFTLS 163
D S+ A + R +Q ++ M + FT
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAV 241
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.4 bits (142), Expect = 2e-09
Identities = 20/185 (10%), Positives = 52/185 (28%), Gaps = 7/185 (3%)
Query: 253 KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312
++ P A +L + ++ + G ++ A +
Sbjct: 85 QAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLP 144
Query: 313 NSKKVFNGMPR-------PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV 365
+ + L + +++ G+A+ G + + ++ +G PD + +
Sbjct: 145 LAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204
Query: 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPM 425
L ++ + GL A A ++ R+ V +
Sbjct: 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSL 264
Query: 426 KPDKF 430
P
Sbjct: 265 PPQLP 269
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.9 bits (138), Expect = 6e-09
Identities = 19/176 (10%), Positives = 54/176 (30%), Gaps = 8/176 (4%)
Query: 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQI 216
+ L+ +L L + + G + + A + A +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 217 FDKMVDR-------DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNA 269
+ + + A++ + ++G +E + + +G+ P+ ++A L
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 270 CADH-AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324
++ M++ G + + L+ + ++ KV P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLP 265
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 6e-10
Identities = 50/359 (13%), Positives = 106/359 (29%), Gaps = 72/359 (20%)
Query: 1 AIDILCNQRRLKEALQILHQISHPSPSIYSSLIQ-F---CR-----QNRALEE--GKKVH 49
+ L + + L +L + + F C+ + + + +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAK------AWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 50 SHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTM-ISGFTKGGSL 108
+H+ + + + K + Q L R+V + N +S S+
Sbjct: 287 THISLDHHSMT-LTPDEVKSLLLKYLDCR-PQDL-----PREVLTTNPRRLSII--AESI 337
Query: 109 EQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV--SNKFTLSSVL 166
+D + T +I + +P E ++ + F S LS +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI-LLSLIW 396
Query: 167 SAVSAIQCLRLGKEIHGY--IMRTGFDSDEVVWSALSDMYGK-CGSINEARQIFDKMVDR 223
V + + ++H Y + + E S + +Y + + + +VD
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEK---QPKESTIS-IPSIYLELKVKLENEYALHRSIVDH 452
Query: 224 DVVS----------------WTAMIGRYFQEGRREEGFALFSEL------IKSGIR---P 258
+ + + IG + + E LF + ++ IR
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDP-YSFAASALVHMYSKCG-NVENSK 315
+LN K Y+ DP Y +A++ K N+ SK
Sbjct: 513 AWNASGSILNTLQQL------KFYKPYICDN--DPKYERLVNAILDFLPKIEENLICSK 563
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 476 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.92 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.9 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.87 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.81 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.78 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.77 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.74 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.73 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.72 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.71 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.71 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.71 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.69 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.69 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.68 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.68 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.65 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.65 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.64 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.62 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.62 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.61 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.61 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.61 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.6 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.59 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.57 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.57 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.56 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.56 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.53 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.52 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.51 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.51 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.5 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.49 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.49 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.46 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.43 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.42 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.41 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.4 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.4 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.39 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.38 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.37 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.34 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.34 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.3 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.3 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.28 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.28 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.28 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.26 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.25 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.22 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.2 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.2 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.19 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.17 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.15 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.14 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.13 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.12 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.11 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.1 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.08 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.08 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.08 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.06 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.05 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.04 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.03 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.03 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.02 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.01 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.0 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.0 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.0 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.0 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.99 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.99 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.99 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.97 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.95 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.94 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.93 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.92 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.92 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.92 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.88 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.87 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.86 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.83 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.82 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.82 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.8 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.79 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.79 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.78 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.77 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.77 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.76 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.75 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.73 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.73 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.73 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.72 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.72 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.71 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.71 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.7 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.7 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.69 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.68 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.67 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.66 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.65 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.65 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.65 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.65 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.63 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.62 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.6 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.59 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.59 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.59 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.58 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.56 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.56 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.53 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.52 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.51 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.51 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.5 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.5 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.5 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.47 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.42 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.41 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.41 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.4 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.39 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.39 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.39 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.39 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.37 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.34 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.33 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.31 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.28 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.27 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.25 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.21 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.18 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.16 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.16 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.16 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.12 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.08 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.04 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.01 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.93 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.93 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.9 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.88 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.88 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.88 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.86 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.84 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.84 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.78 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.78 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.77 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.57 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.55 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.55 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.54 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.51 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.38 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.38 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.06 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.92 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.88 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.87 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.67 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.56 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.54 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.51 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.47 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.46 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.37 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.1 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.08 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.99 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.51 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.37 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.07 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.88 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 94.7 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.67 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.63 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.62 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 94.53 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.34 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 93.53 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.41 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.94 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 92.6 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.53 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 92.49 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 92.41 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.34 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.21 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.99 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.87 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.39 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.13 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.88 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.85 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.82 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 89.65 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 89.26 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.02 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.95 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 88.53 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.44 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 87.12 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.82 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.95 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 84.55 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 83.71 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 82.1 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 81.51 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.58 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=349.70 Aligned_cols=462 Identities=11% Similarity=0.037 Sum_probs=393.9
Q ss_pred hcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038936 7 NQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86 (476)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 86 (476)
+.|.+..+...+...+.++...|+.++..+.+.|++++|..+|+++... .|+..++..++..|.+.|++++|+.+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp -----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 4456666677777777788999999999999999999999999999864 57888999999999999999999999999
Q ss_pred cc--cccchHHHHHHHHHHhcCCHHHHHHHHhcCCCC-------------------CcchHHHHHHHHHhcCChhHHHHH
Q 038936 87 MQ--ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR-------------------DNFSWTAMISGYVRYNQPIEALDL 145 (476)
Q Consensus 87 ~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~a~~~ 145 (476)
+. .+++.+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|+++
T Consensus 143 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 222 (597)
T 2xpi_A 143 EDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKEC 222 (597)
T ss_dssp TCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 84 578899999999999999999999999965443 377899999999999999999999
Q ss_pred HHHHHhccCCCCCch------------------------------------HHHHHHHHHHhhhhhhhHHHHHHHHHHcC
Q 038936 146 YRMMQNFENSVSNKF------------------------------------TLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189 (476)
Q Consensus 146 ~~~~~~~~~~~~~~~------------------------------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 189 (476)
|+++....+..++.. +|+.++..+.+.|++++|.++++.+.+.
T Consensus 223 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~- 301 (597)
T 2xpi_A 223 YKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL- 301 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-
T ss_pred HHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-
Confidence 999987332222111 1222355667889999999999998765
Q ss_pred CCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHH
Q 038936 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266 (476)
Q Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 266 (476)
+++..++..++..|.+.|++++|+.+|+++.+ .+..+++.++.++.+.|++++|..+++++.+.. +.+..++..+
T Consensus 302 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 379 (597)
T 2xpi_A 302 -EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAV 379 (597)
T ss_dssp -GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 68899999999999999999999999999954 356789999999999999999999999998764 5678899999
Q ss_pred HHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChH
Q 038936 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPD 343 (476)
Q Consensus 267 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 343 (476)
...+.+.|++++|.++|+++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|+++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999875 56788999999999999999999999998763 47789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhc---CCCCC--hhhHHHHHHHHHhcCChhhHHH
Q 038936 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH---GLTYT--ADHYACIVDLLARSGRFHEAED 418 (476)
Q Consensus 344 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~ 418 (476)
+|+++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+
T Consensus 459 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 459 LANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999875 4578899999999999999999999999998653 44666 6799999999999999999999
Q ss_pred HHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 419 VISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 419 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
.++++ ...| +..+|..++.+|...|++++|.+.++++++++|+++.++..|+++|.+
T Consensus 538 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 538 ALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99996 3334 788999999999999999999999999999999999999999999975
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=320.45 Aligned_cols=427 Identities=10% Similarity=0.029 Sum_probs=365.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc--ccchHHHHHHHHHHhcCCHHHHHHHHh
Q 038936 39 NRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE--RDVCSYNTMISGFTKGGSLEQARNLFD 116 (476)
Q Consensus 39 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~ 116 (476)
.|.+..+...+..+ ..++...|+.++..|.+.|++++|+.+|+++.+ |+..++..++.+|.+.|++++|..+|+
T Consensus 66 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 66 DGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 34444444444332 235788999999999999999999999999874 777899999999999999999999999
Q ss_pred cCC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc--------------CCCCCchHHHHHHHHHHhhhhhhhHHH
Q 038936 117 EMP--QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFE--------------NSVSNKFTLSSVLSAVSAIQCLRLGKE 180 (476)
Q Consensus 117 ~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~ll~~~~~~~~~~~a~~ 180 (476)
.+. .+++.+++.++.+|.+.|++++|+++|+++.... +.+++..+++.++.++.+.|++++|.+
T Consensus 142 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 221 (597)
T 2xpi_A 142 KEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKE 221 (597)
T ss_dssp HTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHH
Confidence 984 5688899999999999999999999999543212 234567899999999999999999999
Q ss_pred HHHHHHHcCCCchHHHHH--------------------------------------HHHHHHHcCCCHHHHHHHHHhhcc
Q 038936 181 IHGYIMRTGFDSDEVVWS--------------------------------------ALSDMYGKCGSINEARQIFDKMVD 222 (476)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~--------------------------------------~l~~~~~~~~~~~~a~~~~~~~~~ 222 (476)
.|+++.+.+ +.+...+. .++..|.+.|++++|.++|+++.+
T Consensus 222 ~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 300 (597)
T 2xpi_A 222 CYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc
Confidence 999998875 22333322 235566788999999999999977
Q ss_pred --cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHH
Q 038936 223 --RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300 (476)
Q Consensus 223 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 300 (476)
++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..++..
T Consensus 301 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 378 (597)
T 2xpi_A 301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLA 378 (597)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHH
Confidence 788999999999999999999999999999876 4577889999999999999999999999999765 677889999
Q ss_pred HHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCch
Q 038936 301 LVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377 (476)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 377 (476)
++.+|.+.|++++|..+|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++
T Consensus 379 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCH
Confidence 99999999999999999998763 457799999999999999999999999999864 45778999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-------CCCCc--HHHHHHHHHHHHhcCChHHH
Q 038936 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-------PMKPD--KFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 378 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~A 448 (476)
++|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|++++|
T Consensus 458 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 458 LLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999975 3557888999999999999999999999987 34677 78999999999999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 449 KRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 449 ~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
+..++++++.+|+++.+|..|+.+|..
T Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 536 IDALNQGLLLSTNDANVHTAIALVYLH 562 (597)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999864
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-31 Score=239.53 Aligned_cols=366 Identities=14% Similarity=0.097 Sum_probs=259.7
Q ss_pred HHHHHhcCChHHHHHHHHHccc--c-cchHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhH
Q 038936 68 LDMYAKCGNISDAQTLFDEMQE--R-DVCSYNTMISGFTKGGSLEQARNLFDEMPQ---RDNFSWTAMISGYVRYNQPIE 141 (476)
Q Consensus 68 ~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 141 (476)
...+.+.|++++|++.++.+.+ | +...+..+...+...|++++|...++...+ .+..+|..+...+.+.|++++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 3444566666666666666543 2 233444555555556666666555554432 133445555555555555555
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhc
Q 038936 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221 (476)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 221 (476)
|++.|+++.. .. |.+..++..++.++...|++++|.+.|+++.
T Consensus 86 A~~~~~~al~------------------------------------~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 128 (388)
T 1w3b_A 86 AIEHYRHALR------------------------------------LK-PDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp HHHHHHHHHH------------------------------------HC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHH------------------------------------cC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555543 32 2334455556666666666666666666553
Q ss_pred c--c-chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhH
Q 038936 222 D--R-DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298 (476)
Q Consensus 222 ~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 298 (476)
+ | +...+..+...+...|++++|...|.++.+.. +.+..++..+...+...|+++.|...++++.+.+ +.+...+
T Consensus 129 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 206 (388)
T 1w3b_A 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAY 206 (388)
T ss_dssp HHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHH
Confidence 3 2 22345555566666666666666666666543 3345566666666667777777777777766654 4455667
Q ss_pred HHHHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 038936 299 SALVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375 (476)
Q Consensus 299 ~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 375 (476)
..+...+...|++++|...+++..+ | +..++..+...+...|++++|+..|+++.+.+ +.+..++..++.++.+.|
T Consensus 207 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC
Confidence 7777777888888888887776653 3 46788889999999999999999999999864 335678889999999999
Q ss_pred chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHH
Q 038936 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAE 453 (476)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 453 (476)
++++|.+.++++.+. .+.+..++..++.++.+.|++++|.+.++++ ...| +..++..++.++...|++++|...++
T Consensus 286 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 286 SVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999975 4667888999999999999999999999996 4445 57789999999999999999999999
Q ss_pred HHHHcCCCCchhHHHHHHhhhc
Q 038936 454 ALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 454 ~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
++++++|+++.++..++.+|.+
T Consensus 364 ~a~~~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 364 EAIRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHhhCCCCHHHHHhHHHHHHH
Confidence 9999999999999999998864
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-28 Score=221.17 Aligned_cols=369 Identities=12% Similarity=0.093 Sum_probs=179.7
Q ss_pred hhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 038936 5 LCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 81 (476)
+.+.|++++|++.++.+. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|+
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 344555555555555542 3334444444455555555555555555555432 234445555555555555555555
Q ss_pred HHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCC-ch
Q 038936 82 TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN-KF 160 (476)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 160 (476)
..|+++.+.+ ..+..+|..+..++.+.|++++|.+.|+++... .|+ ..
T Consensus 88 ~~~~~al~~~----------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~ 136 (388)
T 1w3b_A 88 EHYRHALRLK----------------------------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYC 136 (388)
T ss_dssp HHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTH
T ss_pred HHHHHHHHcC----------------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHH
Confidence 5555543210 112234455555555555555555555555431 122 12
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHHh
Q 038936 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQ 237 (476)
Q Consensus 161 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~ 237 (476)
.+..+...+...|++++|.+.++.+.+.. |.+..++..+...+...|++++|+..|+++.+. +...|..+...+..
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 215 (388)
T 1w3b_A 137 VRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE 215 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 22233333333344444444444433332 333445555666666666666666666655332 23345555555566
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHH
Q 038936 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317 (476)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 317 (476)
.|++++|...+.+..+.. +.+..++..+...+...|++++|...++.+.+.+ +.++
T Consensus 216 ~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~---------------------- 271 (388)
T 1w3b_A 216 ARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFP---------------------- 271 (388)
T ss_dssp TTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCH----------------------
T ss_pred cCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCH----------------------
Confidence 666666666665555542 2234445555555555555555555555555432 2222
Q ss_pred HccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCCh
Q 038936 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397 (476)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 397 (476)
.+|..+...+.+.|++++|+..++++.+.. +.+..++..++..+...|++++|.+.++++.+. .+.+.
T Consensus 272 ---------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 339 (388)
T 1w3b_A 272 ---------DAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFA 339 (388)
T ss_dssp ---------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCH
T ss_pred ---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcH
Confidence 344444555555555555555555555442 234445555555555555555555555555532 23334
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhc
Q 038936 398 DHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIH 442 (476)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 442 (476)
..+..++.+|.+.|++++|.+.++++ ...| +...|..++..+...
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 45555555555555555555555553 3333 333444454444443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-27 Score=226.60 Aligned_cols=442 Identities=11% Similarity=-0.009 Sum_probs=300.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc--c-cchHHHHHHHHH
Q 038936 26 PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE--R-DVCSYNTMISGF 102 (476)
Q Consensus 26 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 102 (476)
...+......+.+.|++++|...|+++.+.+ |+..++..+..++...|++++|+..++.+.+ | +...+..+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 3455666677777777777777777777754 5677777777777777777777777777654 2 345677777777
Q ss_pred HhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHH
Q 038936 103 TKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179 (476)
Q Consensus 103 ~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 179 (476)
.+.|++++|...|+++.+. +......++..+........+.+.+..+.. ....|+.....................
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDT-ATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhccCChhhHHHhhccCCchhH
Confidence 7777777777777665432 222333333333332222222222221111 000111110000000000000111111
Q ss_pred HHHHHHHHcC---------CCchHHHHHHHHHHHHc---CCCHHHHHHHHHhhcc----------------c-chhhHHH
Q 038936 180 EIHGYIMRTG---------FDSDEVVWSALSDMYGK---CGSINEARQIFDKMVD----------------R-DVVSWTA 230 (476)
Q Consensus 180 ~~~~~~~~~~---------~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~----------------~-~~~~~~~ 230 (476)
.+...+.... .+.+...+......+.. .|++++|+..|+++.+ + +...+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 1111110000 02234555555555554 7889999888888755 1 2446777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCC
Q 038936 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310 (476)
Q Consensus 231 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 310 (476)
+...+...|++++|...++++.+.. |+...+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 8888999999999999999988865 337777888888889999999999999888775 5567788888899999999
Q ss_pred hhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHH
Q 038936 311 VENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387 (476)
Q Consensus 311 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 387 (476)
+++|...++++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..++..+...|++++|...++++
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999988753 356788888999999999999999999998864 335678888899999999999999999999
Q ss_pred HHhcCCCCC----hhhHHHHHHHHHh---cCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038936 388 KEKHGLTYT----ADHYACIVDLLAR---SGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458 (476)
Q Consensus 388 ~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 458 (476)
....+..++ ...+..++.++.. .|++++|.+.++++ ...| +...+..++..+...|++++|...+++++++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 875333333 3378899999999 99999999999986 3333 6678889999999999999999999999999
Q ss_pred CCCCchhHHHHHHhhh
Q 038936 459 EPENPATYVTMANIYA 474 (476)
Q Consensus 459 ~p~~~~~~~~l~~~y~ 474 (476)
+|+++.++..+....+
T Consensus 479 ~~~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 479 ARTMEEKLQAITFAEA 494 (514)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999988887765543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=228.00 Aligned_cols=198 Identities=15% Similarity=0.176 Sum_probs=133.9
Q ss_pred hHHHHHHHHHHcCCCchH-HHHHHHHHHHHcCCCHHHHHHHHHhhc----ccchhhHHHHHHHHHhcCC---------hh
Q 038936 177 LGKEIHGYIMRTGFDSDE-VVWSALSDMYGKCGSINEARQIFDKMV----DRDVVSWTAMIGRYFQEGR---------RE 242 (476)
Q Consensus 177 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~---------~~ 242 (476)
.+..+.+.+.+.+..+.+ .+++.+|++|++.|++++|+++|++|. +||..+|+.||.+|++.+. .+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555566656554332 346667777888888888888877773 4677777777777776554 45
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCC
Q 038936 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322 (476)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (476)
+|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67777777777777777777777777777777777777777777777777777777777777777777777777777765
Q ss_pred ----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 038936 323 ----RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374 (476)
Q Consensus 323 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (476)
.||..+|+.++.+|++.|+.++|.+++++|.+.|..|+..||+.++..|...
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 3677777777777777777777777777777777777777777777766543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-29 Score=231.76 Aligned_cols=197 Identities=13% Similarity=0.144 Sum_probs=165.8
Q ss_pred HHHHHHHHHhccCCCCC-chHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCC---------HH
Q 038936 142 ALDLYRMMQNFENSVSN-KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS---------IN 211 (476)
Q Consensus 142 a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 211 (476)
+..+.+.+.+ .+..+. ...++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.+. ++
T Consensus 9 ~e~L~~~~~~-k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKK-KAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHH-hcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3444455554 444333 345677788888888888888888888888888888888888888887654 78
Q ss_pred HHHHHHHhhc----ccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHH
Q 038936 212 EARQIFDKMV----DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287 (476)
Q Consensus 212 ~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 287 (476)
+|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+.+.|.+++++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999994 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCC----CCChhhHHHHHHHHHhc
Q 038936 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP----RPDLVSWTSLIAGYAQN 339 (476)
Q Consensus 288 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~ 339 (476)
+.|+.|+..+|+.|+.+|++.|++++|.++|++|. .|+..+|+.++..|...
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999997 49999999999988764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-26 Score=219.91 Aligned_cols=434 Identities=12% Similarity=0.039 Sum_probs=312.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc---ccchHHHHHHHH
Q 038936 25 SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE---RDVCSYNTMISG 101 (476)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 101 (476)
....|..+...+.+.|++++|...|+++.+.. +.+..++..+..+|...|++++|++.++++.+ .+...+..+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 45677888899999999999999999999875 34788899999999999999999999999875 356788899999
Q ss_pred HHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc-----cCCCCCchHHHHHHHHHHhhhhhh
Q 038936 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNF-----ENSVSNKFTLSSVLSAVSAIQCLR 176 (476)
Q Consensus 102 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~~~~~ 176 (476)
+...|++++|...|+.+ ..++......+..+...+....|...++.+... ....|+...... +....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChH
Confidence 99999999999999744 333333444455666667778899999888652 122233333222 22223333
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHHcC--------CCHHHHHHHHHhhcccch----------hhHHHHHHHHHhc
Q 038936 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKC--------GSINEARQIFDKMVDRDV----------VSWTAMIGRYFQE 238 (476)
Q Consensus 177 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~----------~~~~~l~~~~~~~ 238 (476)
.+...+....... +........+...+... |++++|+.+++++.+.++ .++..+...+...
T Consensus 178 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYD-TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSC-SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccc-cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc
Confidence 3222221111100 11122333333333322 478888888888865322 2466667788889
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHH
Q 038936 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318 (476)
Q Consensus 239 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 318 (476)
|++++|...+.++.+.. |+...+..+...+...|+++.|...++.+.+.. +.+..++..+...+...|++++|...+
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999998864 557778888888889999999999999988875 566778888999999999999999999
Q ss_pred ccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC
Q 038936 319 NGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395 (476)
Q Consensus 319 ~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 395 (476)
+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|.+.++++.+..+..+
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 88763 346688889999999999999999999998864 34566788889999999999999999999886532222
Q ss_pred C----hhhHHHHHHHHHhc----------CChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 396 T----ADHYACIVDLLARS----------GRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 396 ~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
+ ...+..++.++.+. |++++|...|+++ ...| +...+..++..+...|++++|...+++++++.
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1 12244556778888 9999999999986 3334 56788899999999999999999999999999
Q ss_pred CCCchhHHHH
Q 038936 460 PENPATYVTM 469 (476)
Q Consensus 460 p~~~~~~~~l 469 (476)
|+++.....+
T Consensus 493 ~~~~~~~~~~ 502 (537)
T 3fp2_A 493 RTMDEKLQAT 502 (537)
T ss_dssp --CHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 9887665543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-24 Score=202.69 Aligned_cols=313 Identities=11% Similarity=0.010 Sum_probs=220.8
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 038936 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202 (476)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 202 (476)
+..+..+...+.+.|++++|+.+|+++... .+.+...+..+..++...|+++.|...++.+++.+ +.+..
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~------- 95 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTA------- 95 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHH-------
Confidence 445666666666677777777777666541 12233344444444444444444444444444433 22333
Q ss_pred HHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---hhHHH------------HH
Q 038936 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA---FTFAG------------VL 267 (476)
Q Consensus 203 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~------------l~ 267 (476)
.+..++.+|...|++++|...|+++.+.. +.+. ..+.. +.
T Consensus 96 ------------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a 150 (450)
T 2y4t_A 96 ------------------------ARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQA 150 (450)
T ss_dssp ------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555554432 1111 22222 23
Q ss_pred HHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHH
Q 038936 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDK 344 (476)
Q Consensus 268 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 344 (476)
..+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...|+++.+ .+..+|..++..|...|++++
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34677888888888888888775 56777888888999999999999999988764 467889999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHH------------HHHHhccCchhhHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhc
Q 038936 345 ALEYFELLLKSGTQPDHIVFVGV------------LTACTHAGLVDKGLQYFHSIKEKHGLTYT--ADHYACIVDLLARS 410 (476)
Q Consensus 345 A~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 410 (476)
|+..|+++.+.. +.+...+..+ +..+...|++++|...|+++.+..+..|. ...+..++.++.+.
T Consensus 230 A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 230 SLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHC
Confidence 999999998753 2233344333 78899999999999999999975222111 44788899999999
Q ss_pred CChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 411 GRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 411 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
|++++|++.++++ ...| +...|..++.+|...|++++|...++++++++|+++.++..|+.+
T Consensus 309 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999999996 4344 678999999999999999999999999999999999999999854
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-25 Score=208.53 Aligned_cols=408 Identities=9% Similarity=-0.021 Sum_probs=304.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHccc--ccchHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHh
Q 038936 61 VFISNCLLDMYAKCGNISDAQTLFDEMQE--RDVCSYNTMISGFTKGGSLEQARNLFDEMPQ--R-DNFSWTAMISGYVR 135 (476)
Q Consensus 61 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~ 135 (476)
...+......+.+.|++++|+..|+++.+ |+...|..+..++.+.|++++|...++++.+ | +..++..+..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 45567778889999999999999999875 7888999999999999999999999998764 3 55688899999999
Q ss_pred cCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHH---HHHHcCCCHHH
Q 038936 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS---DMYGKCGSINE 212 (476)
Q Consensus 136 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~ 212 (476)
.|++++|...|+++.... +++.......+..+........+.+.+..+...+..|+......-. ...........
T Consensus 86 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999998632 3445555555555555554444444443333222222111111100 01111111111
Q ss_pred HHHHHHhhc----------ccchhhHHHHHHHHHh---cCChhHHHHHHHHHHH-----cCCC--------CCHhhHHHH
Q 038936 213 ARQIFDKMV----------DRDVVSWTAMIGRYFQ---EGRREEGFALFSELIK-----SGIR--------PNAFTFAGV 266 (476)
Q Consensus 213 a~~~~~~~~----------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~--------~~~~~~~~l 266 (476)
....+.... ..+...+......+.. .|++++|...|+++.+ .... .+...+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 222221111 1123445555555554 8999999999999988 3112 234567777
Q ss_pred HHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChH
Q 038936 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPD 343 (476)
Q Consensus 267 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 343 (476)
...+...|+++.|...++.+.+.... ...+..+..++...|++++|...++++.+ .+...+..+...+...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999988633 88888999999999999999999998764 45678899999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 344 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
+|+..++++.+.. +.+...+..++..+...|++++|...++++.+. .+.+...+..++.++.+.|++++|.+.++++
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999864 335678888999999999999999999999975 3456778999999999999999999999986
Q ss_pred -C---CCCc----HHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 424 -P---MKPD----KFLWASLLGGCRI---HGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 424 -~---~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
. ..++ ...+..++..+.. .|++++|...++++++.+|+++.++..++.+|..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 461 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ 461 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 2 2222 3488899999999 9999999999999999999999999999998864
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-24 Score=201.65 Aligned_cols=357 Identities=11% Similarity=0.054 Sum_probs=242.1
Q ss_pred HHHHHHHHccc---ccchHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038936 79 DAQTLFDEMQE---RDVCSYNTMISGFTKGGSLEQARNLFDEMPQ---RDNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152 (476)
Q Consensus 79 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 152 (476)
.+...+..+.. .+...+..++..+.+.|++++|..+|+++.+ .+..++..+..++...|++++|+..|+++...
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34444444443 3557899999999999999999999998764 36778999999999999999999999999863
Q ss_pred cCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchH---HHHHHHHH------------HHHcCCCHHHHHHHH
Q 038936 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE---VVWSALSD------------MYGKCGSINEARQIF 217 (476)
Q Consensus 153 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~------------~~~~~~~~~~a~~~~ 217 (476)
.+.+...+..+..++...|+++.|.+.++.+.+.. +.+. ..+..++. .+...|++++|+..|
T Consensus 90 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 90 --KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 23456788889999999999999999999998765 4444 55555533 466677777777777
Q ss_pred Hhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc
Q 038936 218 DKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294 (476)
Q Consensus 218 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 294 (476)
+++.+ .+...+..++.+|...|++++|...|+++.+.. +.+..++..+...+...|+++.|...++.+.+.. +.+
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 244 (450)
T 2y4t_A 167 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDH 244 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCh
Confidence 77643 244556667777777777777777777776653 3455666666666777777777777777766553 222
Q ss_pred hhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-----HHHHHHHHH
Q 038936 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD-----HIVFVGVLT 369 (476)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~ 369 (476)
...+..+... + ....+..++..+...|++++|+..|+++.+.. |+ ...+..++.
T Consensus 245 ~~~~~~~~~~----~---------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 245 KRCFAHYKQV----K---------------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICH 303 (450)
T ss_dssp HHHHHHHHHH----H---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----H---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHH
Confidence 2222222000 0 00112234667777888888888888887743 43 335677777
Q ss_pred HHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHH---------
Q 038936 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGG--------- 438 (476)
Q Consensus 370 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~--------- 438 (476)
++.+.|++++|++.++++.+. .+.+...+..++.+|...|++++|.+.++++ ...|+ ...+..+..+
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 381 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQK 381 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccc
Confidence 788888888888888887764 2446677888888888888888888888875 45553 4455555422
Q ss_pred ---HHhcC-----ChHHHHHHHHH-HHHcCCCCc
Q 038936 439 ---CRIHG-----NLDLAKRAAEA-LFEIEPENP 463 (476)
Q Consensus 439 ---~~~~g-----~~~~A~~~~~~-~~~~~p~~~ 463 (476)
|...| +.+++.+.|++ +++..|++.
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence 33334 66778888886 778888753
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-24 Score=204.30 Aligned_cols=412 Identities=11% Similarity=0.043 Sum_probs=313.1
Q ss_pred hhhhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 038936 3 DILCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD 79 (476)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 79 (476)
..+.+.|++++|++.|+++. +.++.+|..+..++.+.|++++|...++++.+.+ +.+..++..+..++...|++++
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence 35788999999999999984 6788999999999999999999999999999875 3467888999999999999999
Q ss_pred HHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCC------CcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038936 80 AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR------DNFSWTAMISGYVRYNQPIEALDLYRMMQNFE 153 (476)
Q Consensus 80 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 153 (476)
|+..|+.+ ..++......+..+...+....|...++.+... ........+..+....+.+.+...+.....
T Consensus 112 A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 188 (537)
T 3fp2_A 112 AMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN-- 188 (537)
T ss_dssp HHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS--
T ss_pred HHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc--
Confidence 99999744 333333333455566667778899998888653 222334455666667777666655443321
Q ss_pred CCCCCchHHHHHHH-HH--------HhhhhhhhHHHHHHHHHHcCCCch------HHHHHHHHHHHHcCCCHHHHHHHHH
Q 038936 154 NSVSNKFTLSSVLS-AV--------SAIQCLRLGKEIHGYIMRTGFDSD------EVVWSALSDMYGKCGSINEARQIFD 218 (476)
Q Consensus 154 ~~~~~~~~~~~ll~-~~--------~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~ 218 (476)
..+....+...+. .+ ...++++.|..+++.+.+...... ..++..+...+...|++++|...++
T Consensus 189 -~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 189 -YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp -SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 2222222222222 11 123588999999999887652211 2356777888999999999999999
Q ss_pred hhcc--cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchh
Q 038936 219 KMVD--RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296 (476)
Q Consensus 219 ~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 296 (476)
...+ |+...+..+...+...|++++|...+.++.+.. +.+..++..+...+...|+++.|...++.+.+.. +.+..
T Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 345 (537)
T 3fp2_A 268 ESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVY 345 (537)
T ss_dssp HHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSH
T ss_pred HHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 9854 556778888999999999999999999998875 4567788888999999999999999999999885 55677
Q ss_pred hHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CcHHHHHHHH
Q 038936 297 AASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-----PDHIVFVGVL 368 (476)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~ 368 (476)
.+..+..++...|++++|...++++.+ .+...+..+...+...|++++|+..++++.+.... .....+....
T Consensus 346 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a 425 (537)
T 3fp2_A 346 PYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKA 425 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH
Confidence 888999999999999999999998764 45668899999999999999999999998875311 1112344455
Q ss_pred HHHhcc----------CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 369 TACTHA----------GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 369 ~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
..+... |++++|...++++.+. .+.+...+..++.+|.+.|++++|.+.|+++
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 667777 9999999999999975 3556788999999999999999999999996
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-22 Score=180.30 Aligned_cols=324 Identities=11% Similarity=0.013 Sum_probs=218.9
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 038936 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202 (476)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 202 (476)
+..+..+...+...|++++|+..|+++... .+.+...+..+...+...|+++.|...++.+.+.. +.+...+..++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 345666777777788888888888777652 22234455555555566666666666666655543 333455555555
Q ss_pred HHHcCCCHHHHHHHHHhhcccch------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccH
Q 038936 203 MYGKCGSINEARQIFDKMVDRDV------VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276 (476)
Q Consensus 203 ~~~~~~~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 276 (476)
.+...|++++|...|+++.+.++ ..+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 55556666666666555533222 11221110000 00111123456667777
Q ss_pred HHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038936 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLL 353 (476)
Q Consensus 277 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 353 (476)
+.|...++.+.+.. +.+...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...+++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777776664 45566677777777777888888777776653 356678888888888999999999999888
Q ss_pred HcCCCCcHHHHH------------HHHHHHhccCchhhHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChhhHHHH
Q 038936 354 KSGTQPDHIVFV------------GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA--DHYACIVDLLARSGRFHEAEDV 419 (476)
Q Consensus 354 ~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~ 419 (476)
+... .+...+. .++..+...|++++|...++++.+..+..+.. ..+..++.++.+.|++++|.+.
T Consensus 216 ~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 216 KLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 7542 2222222 23666889999999999999999763221111 3355688999999999999999
Q ss_pred HhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 420 ISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 420 ~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
++++ ...| +...+..++..+...|++++|...++++++++|+++.++..|+.++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 9986 3344 67799999999999999999999999999999999999999988764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-21 Score=174.03 Aligned_cols=281 Identities=12% Similarity=0.084 Sum_probs=212.7
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038936 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267 (476)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 267 (476)
+.+...+..++..+...|++++|+++|+++.+. +...+..++.++...|++++|...++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 344445666677777778888888877777543 23445566677777788888888887777754 34556666677
Q ss_pred HHHhccc-cHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChH
Q 038936 268 NACADHA-AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPD 343 (476)
Q Consensus 268 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 343 (476)
..+...| +++.|...++.+.+.. +.+...+..+...+...|++++|...++++.+ .+...+..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 7788888887777664 44566677777888888888888888877663 33566777888888999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCC-------CCChhhHHHHHHHHHhcCChhhH
Q 038936 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL-------TYTADHYACIVDLLARSGRFHEA 416 (476)
Q Consensus 344 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A 416 (476)
+|+..++++.+.. +.+...+..++..+...|++++|...++++.+...- +.....+..++.++.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999988864 345677888888888999999999999888864311 33456788899999999999999
Q ss_pred HHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 417 EDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 417 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
.+.++++ ...| +...+..++..+...|++++|...++++++++|+++.++..|+.+|.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 9999886 3233 56688888888999999999999999999999999999999988773
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-20 Score=172.14 Aligned_cols=373 Identities=12% Similarity=0.031 Sum_probs=178.7
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHccc-ccchHHHHHHHHHHh----cCCHHHHHHHHh
Q 038936 46 KKVHSHLKSSGFKPGVFISNCLLDMYAK----CGNISDAQTLFDEMQE-RDVCSYNTMISGFTK----GGSLEQARNLFD 116 (476)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 116 (476)
...+....+.| ++..+..+...|.. .+++++|...|++..+ .++..+..|...|.. .+++++|...|+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 34444444433 45555555555555 5666666666666543 344555556666655 566666666666
Q ss_pred cCCCC-CcchHHHHHHHHHh----cCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHh----hhhhhhHHHHHHHHHH
Q 038936 117 EMPQR-DNFSWTAMISGYVR----YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA----IQCLRLGKEIHGYIMR 187 (476)
Q Consensus 117 ~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~ 187 (476)
+..+. ++..+..+...|.. .+++++|++.|++... .+ +...+..+...+.. .++.+.|.+.++...+
T Consensus 104 ~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 104 KAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE-QG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 55433 44445555555555 5566666666666554 11 22233333333333 3344444444444444
Q ss_pred cCCCchHHHHHHHHHHHHc----CCCHHHHHHHHHhhccc-chhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCC
Q 038936 188 TGFDSDEVVWSALSDMYGK----CGSINEARQIFDKMVDR-DVVSWTAMIGRYFQ----EGRREEGFALFSELIKSGIRP 258 (476)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 258 (476)
.| +...+..+...|.. .+++++|..+|++..+. ++..+..+...|.. .+++++|..+|++..+.|
T Consensus 180 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 253 (490)
T 2xm6_A 180 QG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--- 253 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---
T ss_pred CC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 33 23344444455544 45555555555554332 23344444444443 445555555555554432
Q ss_pred CHhhHHHHHHHHhc----cccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHH
Q 038936 259 NAFTFAGVLNACAD----HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334 (476)
Q Consensus 259 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 334 (476)
+...+..+...+.. .++.++|...++...+.| ++..+..+..
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----------------------------------~~~a~~~Lg~ 299 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG----------------------------------NSDGQYYLAH 299 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT----------------------------------CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC----------------------------------CHHHHHHHHH
Confidence 22233333333333 444444554444444332 3334444444
Q ss_pred HHHhc-----CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC---chhhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 038936 335 GYAQN-----GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG---LVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406 (476)
Q Consensus 335 ~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 406 (476)
.|... +++++|+..|++..+.| +...+..+...|...| ++++|+++|+++.+. .++..+..++..
T Consensus 300 ~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~ 372 (490)
T 2xm6_A 300 LYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNA 372 (490)
T ss_dssp HHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHH
Confidence 44444 45555555555555543 2233333444443323 455555555555542 234445555555
Q ss_pred HHh----cCChhhHHHHHhhCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCC---CCchhHHHHHHh
Q 038936 407 LAR----SGRFHEAEDVISKMPMKPDKFLWASLLGGCRI----HGNLDLAKRAAEALFEIEP---ENPATYVTMANI 472 (476)
Q Consensus 407 ~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~ 472 (476)
|.. .+++++|.+.|+++....+...+..++..|.. .+++++|...|+++.+.+| +++.+...|+.+
T Consensus 373 y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 373 LLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 555 45555555555554222234444445555544 4555555555555555552 244444444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-20 Score=166.36 Aligned_cols=323 Identities=10% Similarity=0.024 Sum_probs=224.7
Q ss_pred cchHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHH
Q 038936 91 DVCSYNTMISGFTKGGSLEQARNLFDEMPQ---RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167 (476)
Q Consensus 91 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 167 (476)
++..+..+...+...|++++|...|+++.+ .++..+..+..++...|++++|+..|+++... .+.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHH
Confidence 456788899999999999999999998864 35678889999999999999999999999863 2335578888999
Q ss_pred HHHhhhhhhhHHHHHHHHHHcCCC---chHHHHHHH------------HHHHHcCCCHHHHHHHHHhhcc---cchhhHH
Q 038936 168 AVSAIQCLRLGKEIHGYIMRTGFD---SDEVVWSAL------------SDMYGKCGSINEARQIFDKMVD---RDVVSWT 229 (476)
Q Consensus 168 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 229 (476)
.+...|+++.|...++.+.+.. + .+...+..+ ...+...|++++|+..++++.+ .+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 9999999999999999998764 3 345555544 4556666666666666666533 2344555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcC
Q 038936 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309 (476)
Q Consensus 230 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 309 (476)
.+...+...|++++|...++++.+.. +.+...+..+...+...|+++.|...++...+.. +.+...+..+...-
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~---- 232 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVK---- 232 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH----
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHH----
Confidence 56666666666666666666665543 3344555555555666666666666666655543 22222111110000
Q ss_pred ChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccCchhhHHHHHH
Q 038936 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH----IVFVGVLTACTHAGLVDKGLQYFH 385 (476)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~ 385 (476)
.......+...+.+.|++++|+..++++.+.... +. ..+..+..++...|++++|.+.++
T Consensus 233 ---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 296 (359)
T 3ieg_A 233 ---------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICS 296 (359)
T ss_dssp ---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 0111223466788899999999999999886422 22 234557788889999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHHHH
Q 038936 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGGCR 440 (476)
Q Consensus 386 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 440 (476)
++.+. .+.+...+..++.++.+.|++++|.+.|+++ ...|+ ...+..+..+..
T Consensus 297 ~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 297 EVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 99875 3557788899999999999999999999986 55564 455665555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.7e-19 Score=166.20 Aligned_cols=359 Identities=12% Similarity=0.068 Sum_probs=261.9
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHH
Q 038936 14 ALQILHQIS-HPSPSIYSSLIQFCRQ----NRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK----CGNISDAQTLF 84 (476)
Q Consensus 14 A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 84 (476)
+++.++... ..++..+..+...+.. .+++++|...|++..+.| +...+..|...|.. .+++++|...|
T Consensus 26 ~~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 102 (490)
T 2xm6_A 26 NLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWY 102 (490)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 345555543 7788899999998888 899999999999999875 67788888899988 89999999999
Q ss_pred HHccc-ccchHHHHHHHHHHh----cCCHHHHHHHHhcCCCC-CcchHHHHHHHHHh----cCChhHHHHHHHHHHhccC
Q 038936 85 DEMQE-RDVCSYNTMISGFTK----GGSLEQARNLFDEMPQR-DNFSWTAMISGYVR----YNQPIEALDLYRMMQNFEN 154 (476)
Q Consensus 85 ~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 154 (476)
++..+ .++..+..|...|.. .+++++|...|++..+. ++..+..+...|.. .+++++|++.|++..+ .
T Consensus 103 ~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~-~- 180 (490)
T 2xm6_A 103 KKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE-Q- 180 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T-
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C-
Confidence 99876 466788888888888 88999999999987765 66678888888887 7899999999999986 3
Q ss_pred CCCCchHHHHHHHHHHh----hhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHc----CCCHHHHHHHHHhhccc-ch
Q 038936 155 SVSNKFTLSSVLSAVSA----IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK----CGSINEARQIFDKMVDR-DV 225 (476)
Q Consensus 155 ~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~ 225 (476)
.+...+..+...+.. .++.++|.+.++...+.| +...+..+...|.. .+++++|..+|++..+. ++
T Consensus 181 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 255 (490)
T 2xm6_A 181 --GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNS 255 (490)
T ss_dssp --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCH
T ss_pred --CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 356677777777777 789999999999998876 34567778888876 88999999999998654 55
Q ss_pred hhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc-----ccHHHHHHHHHHHHHhCCCCchh
Q 038936 226 VSWTAMIGRYFQ----EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH-----AAEELGKQVHGYMTRIGYDPYSF 296 (476)
Q Consensus 226 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~ 296 (476)
..+..+...|.. .+++++|..+|++..+.| +...+..+...+... +++++|...++...+.+ +..
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~ 329 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DAT 329 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHH
Confidence 677778888887 899999999999998765 344555566666655 78888888888777654 223
Q ss_pred hHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc---
Q 038936 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH--- 373 (476)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 373 (476)
.+..+...|...|. .+++++|++.|++..+.| +...+..+...|..
T Consensus 330 a~~~lg~~y~~~g~----------------------------~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g 378 (490)
T 2xm6_A 330 AQANLGAIYFRLGS----------------------------EEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKG 378 (490)
T ss_dssp HHHHHHHHHHHSCC----------------------------HHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhCCC----------------------------cccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 33444444443330 014455555555555542 34444445555554
Q ss_pred -cCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhhHHHHHhhC
Q 038936 374 -AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR----SGRFHEAEDVISKM 423 (476)
Q Consensus 374 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 423 (476)
.+++++|.++|+++.+. + ++..+..++.+|.+ .+++++|.+.|+++
T Consensus 379 ~~~~~~~A~~~~~~A~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 379 VKKDEQQAAIWMRKAAEQ-G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp SCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 55666666666665542 2 34445555555555 55666666666554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-18 Score=165.38 Aligned_cols=410 Identities=10% Similarity=0.067 Sum_probs=272.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc--ccchHHHHHHH
Q 038936 23 HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE--RDVCSYNTMIS 100 (476)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~ 100 (476)
+.+...|..++. +.+.|++++|..+|+.+.+.. +.+...|..++..+.+.|++++|..+|+.+.+ |+...|...+.
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 567778888887 477888999999999888863 44667788888888888899999999988775 56566666664
Q ss_pred HH-HhcCCHHHHHH----HHhcCCC------CCcchHHHHHHHHHh---------cCChhHHHHHHHHHHhccCCCCCch
Q 038936 101 GF-TKGGSLEQARN----LFDEMPQ------RDNFSWTAMISGYVR---------YNQPIEALDLYRMMQNFENSVSNKF 160 (476)
Q Consensus 101 ~~-~~~g~~~~a~~----~~~~~~~------~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~ 160 (476)
.. ...|+.++|.+ +|+.... .+...|...+....+ .|++++|..+|++... .+..+...
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~ 166 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQ 166 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHH
Confidence 33 34566666554 5554321 234556666665544 5677777778777765 21111112
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhh------c-------ccc---
Q 038936 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM------V-------DRD--- 224 (476)
Q Consensus 161 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~-------~~~--- 224 (476)
.|..........+. . +...++. .+.+++..|..++... . .|+
T Consensus 167 ~~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 167 LWRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp HHHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred HHHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 22221111000000 0 0000000 1223445555544431 1 111
Q ss_pred -----hhhHHHHHHHHHhc----CCh----hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc-------cccHH-------
Q 038936 225 -----VVSWTAMIGRYFQE----GRR----EEGFALFSELIKSGIRPNAFTFAGVLNACAD-------HAAEE------- 277 (476)
Q Consensus 225 -----~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~------- 277 (476)
...|...+...... ++. +++..+|++.+... +.+...|......+.+ .|+++
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 12344443322221 222 36777888887753 4456666666666654 67776
Q ss_pred HHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CC-h-hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038936 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PD-L-VSWTSLIAGYAQNGMPDKALEYFELLL 353 (476)
Q Consensus 278 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~~ 353 (476)
.|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++.+ |+ . ..|..++..+.+.|++++|..+|++..
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8888988888632355677888888889999999999999988764 43 2 478888888889999999999999998
Q ss_pred HcCCCCcHHHHHHHHHH-HhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC----CCCCc
Q 038936 354 KSGTQPDHIVFVGVLTA-CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM----PMKPD 428 (476)
Q Consensus 354 ~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~ 428 (476)
+.. +.+...+...+.. +...|++++|..+|+++.+.. +.++..|..++..+.+.|+.++|..+|+++ +..|+
T Consensus 384 ~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 384 EDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp TCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred hcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 853 2233333333222 336899999999999999763 456788999999999999999999999986 22343
Q ss_pred --HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038936 429 --KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 429 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 461 (476)
...|...+......|+.+.+..+++++++..|+
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 448888888888899999999999999999885
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-17 Score=164.64 Aligned_cols=406 Identities=11% Similarity=0.074 Sum_probs=293.1
Q ss_pred hhhhhhcCCHHHHHHHHHhcC-C-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038936 2 IDILCNQRRLKEALQILHQIS-H-----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75 (476)
Q Consensus 2 i~~~~~~~~~~~A~~~~~~~~-~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 75 (476)
+++|...|.+.+|+++++++. . .+....+.++....+. +..+..++.+.+... + ...+...+...|
T Consensus 992 vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 992 VKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNE 1063 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCC
Confidence 567888899999999999885 2 3445666677666666 556666666665422 1 233667788899
Q ss_pred ChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCC
Q 038936 76 NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155 (476)
Q Consensus 76 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 155 (476)
.+++|..+|++.... ....+.+ +-..|++++|.++.++.. ++.+|..+..++...|++++|++.|.+.
T Consensus 1064 lyEEAf~IYkKa~~~-~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------ 1131 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDVN-TSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------ 1131 (1630)
T ss_pred CHHHHHHHHHHcCCH-HHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------
Confidence 999999999996421 1122222 227788999999988773 4678889999999999999999998654
Q ss_pred CCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHH
Q 038936 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235 (476)
Q Consensus 156 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 235 (476)
.|...|..++.++.+.|+++++.+++...++.. ++....+.++.+|.+.+++++...+. ..++...|..+...|
T Consensus 1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRC 1205 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHH
Confidence 456778889999999999999999998887765 33333345888899998888655443 345666677788899
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHH
Q 038936 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315 (476)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (476)
...|++++|..+|... ..|..+...+.+.|+++.|.+.+++. .+..+|..+..+|...|++..|.
T Consensus 1206 e~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred HhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHH
Confidence 9999999999999885 37888888999999999999998875 44577888888888999999998
Q ss_pred HHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh--ccCchhhHHHHHHHHHHhcCC
Q 038936 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT--HAGLVDKGLQYFHSIKEKHGL 393 (476)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~ 393 (476)
..... ...++..+..++..|.+.|.+++|+.+++..+... +-....|+-+...++ +.++..++.+.|..-. .+
T Consensus 1271 ~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri---ni 1345 (1630)
T 1xi4_A 1271 MCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV---NI 1345 (1630)
T ss_pred HHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---cc
Confidence 87765 44566677788899999999999999998887643 223345555555554 3445555555554332 34
Q ss_pred CC------ChhhHHHHHHHHHhcCChhhHHHHHhhC--------------CCCCcHHHHHHHHHHHHhcC----------
Q 038936 394 TY------TADHYACIVDLLARSGRFHEAEDVISKM--------------PMKPDKFLWASLLGGCRIHG---------- 443 (476)
Q Consensus 394 ~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------------~~~p~~~~~~~l~~~~~~~g---------- 443 (476)
++ +...|..++..|.+.|+++.|....-+. ....++..|...+.-|...+
T Consensus 1346 ~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~ 1425 (1630)
T 1xi4_A 1346 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMV 1425 (1630)
T ss_pred chHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 44 4567888899999999999998443322 12346666666666666555
Q ss_pred -----ChHHHHHHHH
Q 038936 444 -----NLDLAKRAAE 453 (476)
Q Consensus 444 -----~~~~A~~~~~ 453 (476)
+.+++.++++
T Consensus 1426 l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1426 LSPRLDHTRAVNYFS 1440 (1630)
T ss_pred hhhcCChHHHHHHHH
Confidence 6666666665
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=5e-20 Score=162.50 Aligned_cols=281 Identities=12% Similarity=0.096 Sum_probs=105.2
Q ss_pred hcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038936 7 NQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86 (476)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 86 (476)
+.|++++|.+++++++.| .+|..++.++.+.|++++|.+.|.+. +|..+|..++..+...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 457788999999888544 48889999999999999999888652 4677888888888888999999987776
Q ss_pred ccc--ccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHH
Q 038936 87 MQE--RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164 (476)
Q Consensus 87 ~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 164 (476)
..+ +++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+. .|..
T Consensus 87 ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~----------n~~~ 153 (449)
T 1b89_A 87 ARKKARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGR 153 (449)
T ss_dssp ----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHTT----------CHHH
T ss_pred HHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----------hHHH
Confidence 654 4567788888899999999888877753 666788888888888999999988888763 4777
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHH
Q 038936 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244 (476)
Q Consensus 165 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 244 (476)
+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHH
Confidence 777777777777777777766 256677777777777777777766555443 3333344566677777777777
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhc--cccHHHHHHHHHHHHHhCCCC------chhhHHHHHHHhhhcCChhhHHH
Q 038936 245 FALFSELIKSGIRPNAFTFAGVLNACAD--HAAEELGKQVHGYMTRIGYDP------YSFAASALVHMYSKCGNVENSKK 316 (476)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~ 316 (476)
..+++...... +.....|+-+...+++ .++..+..+.|. .+.+++| +...|..++..|...++++.|..
T Consensus 227 i~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 227 ITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 77777766543 3334444444444443 233333333332 1122232 34455556666666666665554
Q ss_pred HH
Q 038936 317 VF 318 (476)
Q Consensus 317 ~~ 318 (476)
..
T Consensus 304 tm 305 (449)
T 1b89_A 304 TM 305 (449)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-19 Score=158.60 Aligned_cols=287 Identities=13% Similarity=0.055 Sum_probs=178.8
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHH
Q 038936 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201 (476)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 201 (476)
++..+..+...+...|++++|+++|+++.... +.+...+..++.++...|+++.|...++.+.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 55566677777777777777777777776522 2223334444445555555555555555555443 23344444455
Q ss_pred HHHHcCC-CHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHH
Q 038936 202 DMYGKCG-SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280 (476)
Q Consensus 202 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 280 (476)
..+...| ++++|...|++. .+.. +.+...+..+...+...|+++.|.
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a-------------------------------~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 145 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKA-------------------------------TTLE-KTYGPAWIAYGHSFAVESEHDQAM 145 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHH-------------------------------HTTC-TTCTHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHH-------------------------------HHhC-CccHHHHHHHHHHHHHccCHHHHH
Confidence 5555555 555555555544 4332 222333444444444445555555
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-
Q 038936 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG- 356 (476)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 356 (476)
..++.+.+.. +.+...+..+...|...|++++|...++++.+ .+...+..+...+...|++++|+..++++.+..
T Consensus 146 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 146 AAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp HHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 5554444443 22333444455555556666666666555443 345667778888888888888888888887642
Q ss_pred -------CCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-
Q 038936 357 -------TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP- 427 (476)
Q Consensus 357 -------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 427 (476)
.+.+..++..+..++...|++++|...++++.+. .+.+...+..++.++.+.|++++|.+.++++ ...|
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 1334568888899999999999999999999875 3456778899999999999999999999996 5555
Q ss_pred cHHHHHHHHHHH-HhcCChH
Q 038936 428 DKFLWASLLGGC-RIHGNLD 446 (476)
Q Consensus 428 ~~~~~~~l~~~~-~~~g~~~ 446 (476)
+...+..+..++ ...|+.+
T Consensus 303 ~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 303 DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHHHHTTTTC--
T ss_pred chHHHHHHHHHHHHHhCchh
Confidence 566777888777 4456644
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=9.2e-20 Score=164.76 Aligned_cols=282 Identities=11% Similarity=0.053 Sum_probs=137.8
Q ss_pred hcCCHHHHHH-HHhcCCCC-------CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhh
Q 038936 104 KGGSLEQARN-LFDEMPQR-------DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL 175 (476)
Q Consensus 104 ~~g~~~~a~~-~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 175 (476)
..|++++|.. .+++.... +...+..+...+.+.|++++|+..|+++..
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------------------------ 92 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ------------------------ 92 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------------
Confidence 3456666665 55544321 233455555666666666666666666554
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038936 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELI 252 (476)
Q Consensus 176 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 252 (476)
.. +.+..++..++..+...|++++|+..|+++.+ .+..++..+...+...|++++|...++++.
T Consensus 93 ------------~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 93 ------------QD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp ------------SC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------hC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 33444555566666666666666666665533 234456666666666666666666666666
Q ss_pred HcCCCCCHhhHHH---------------HHHHHhccccHHHHHHHHHHHHHhCCCC-chhhHHHHHHHhhhcCChhhHHH
Q 038936 253 KSGIRPNAFTFAG---------------VLNACADHAAEELGKQVHGYMTRIGYDP-YSFAASALVHMYSKCGNVENSKK 316 (476)
Q Consensus 253 ~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 316 (476)
+... .+...+.. .+..+...|+++.|...++.+.+..... +..+
T Consensus 160 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~------------------- 219 (368)
T 1fch_A 160 RYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV------------------- 219 (368)
T ss_dssp HTST-TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH-------------------
T ss_pred HhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH-------------------
Confidence 5431 11111111 1222225566666666666665543110 2334
Q ss_pred HHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC
Q 038936 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396 (476)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 396 (476)
+..+...|...|++++|+..++++.+.. +.+..++..++..+...|++++|+..++++.+. .+.+
T Consensus 220 ------------~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~ 284 (368)
T 1fch_A 220 ------------QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGY 284 (368)
T ss_dssp ------------HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred ------------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc
Confidence 4444444555555555555555554432 223344445555555555555555555555443 1233
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC------------cHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 397 ADHYACIVDLLARSGRFHEAEDVISKM-PMKP------------DKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
...+..++.+|.+.|++++|...|+++ ...| ...+|..++.++...|++++|..++++.++
T Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 444555555555555555555555543 1111 134555555556666666666555554443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-18 Score=151.14 Aligned_cols=258 Identities=10% Similarity=-0.005 Sum_probs=209.7
Q ss_pred HHHHHcCCCHHHHHHHHHhhcccch----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccH
Q 038936 201 SDMYGKCGSINEARQIFDKMVDRDV----VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276 (476)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 276 (476)
++-....|+++.|+..++.+...++ .....+..+|...|+++.|...++. . -+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 3445667999999999988755433 2345567899999999999886654 2 356777888888899999999
Q ss_pred HHHHHHHHHHHHhCC-CCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038936 277 ELGKQVHGYMTRIGY-DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355 (476)
Q Consensus 277 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 355 (476)
+.|.+.++.+...+. |.++..+..+..++...|++++|+..+++ ..+...+..++..+.+.|++++|.+.++++.+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 999999999988764 44566677778999999999999999999 567788999999999999999999999999986
Q ss_pred CCCCcHHHH---HHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHH
Q 038936 356 GTQPDHIVF---VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKF 430 (476)
Q Consensus 356 ~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 430 (476)
. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|.+.|+++ ...| +..
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 4 554321 12223344569999999999999986 4678888999999999999999999999996 4445 677
Q ss_pred HHHHHHHHHHhcCChHH-HHHHHHHHHHcCCCCchhHHH
Q 038936 431 LWASLLGGCRIHGNLDL-AKRAAEALFEIEPENPATYVT 468 (476)
Q Consensus 431 ~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~ 468 (476)
++..++..+...|+.++ +.++++++++++|+++.+...
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 89999999999999876 678999999999999876553
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-17 Score=157.24 Aligned_cols=392 Identities=9% Similarity=0.080 Sum_probs=235.3
Q ss_pred hhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCChHHH
Q 038936 5 LCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMY-AKCGNISDA 80 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A 80 (476)
+.+.|++++|..+|+++. +.+...|...+..+.+.|++++|..+|++++... |++..|...+... ...|+.+.|
T Consensus 22 ~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a 99 (530)
T 2ooe_A 22 EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSY 99 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTH
T ss_pred HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhH
Confidence 356899999999999984 6788899999999999999999999999999864 6777777777533 456888777
Q ss_pred HH----HHHHccc------ccchHHHHHHHHHHh---------cCCHHHHHHHHhcCCCC-Cc---chHHHHHHHHHhcC
Q 038936 81 QT----LFDEMQE------RDVCSYNTMISGFTK---------GGSLEQARNLFDEMPQR-DN---FSWTAMISGYVRYN 137 (476)
Q Consensus 81 ~~----~~~~~~~------~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~-~~---~~~~~l~~~~~~~~ 137 (476)
.+ +|+.... ++...|...+....+ .|+++.|..+|++..+. .. ..|..........|
T Consensus 100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~ 179 (530)
T 2ooe_A 100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGIN 179 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhc
Confidence 65 6666532 245677777776654 78999999999998762 11 12222222111111
Q ss_pred ChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHH------HHcC---CCch--------HHHHHHH
Q 038936 138 QPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI------MRTG---FDSD--------EVVWSAL 200 (476)
Q Consensus 138 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~------~~~~---~~~~--------~~~~~~l 200 (476)
. ..+..++. ...+++..|..++... .+.. ++|+ ...|...
T Consensus 180 ~-~~~~~~l~----------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 180 I-HLAKKMIE----------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp H-HHHHHHHH----------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred h-hHHHHHHH----------------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 0 00000000 0123333333333321 1110 1222 1233333
Q ss_pred HHHHHcC----CCH----HHHHHHHHhhcc---cchhhHHHHHHHHHh-------cCChh-------HHHHHHHHHHHcC
Q 038936 201 SDMYGKC----GSI----NEARQIFDKMVD---RDVVSWTAMIGRYFQ-------EGRRE-------EGFALFSELIKSG 255 (476)
Q Consensus 201 ~~~~~~~----~~~----~~a~~~~~~~~~---~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~ 255 (476)
+...... ++. +++..+|++... .++..|..++..+.+ .|+++ +|..+|++..+.-
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~ 316 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 316 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh
Confidence 3222111 121 245555655543 234455555555554 46655 6666666665421
Q ss_pred CCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc-hhhHHHHHHHhhhcCChhhHHHHHccCCCCC---hhhHHH
Q 038936 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY-SFAASALVHMYSKCGNVENSKKVFNGMPRPD---LVSWTS 331 (476)
Q Consensus 256 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 331 (476)
.+.+...+..++..+.+.|+++.|..+++.+.+.. +.+ ...|..++..+.+.|++++|..+|++..+.. ...|..
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~ 395 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 395 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence 22345555566666666677777777777666642 112 2356666666666677777777776665421 122222
Q ss_pred HHHH-HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC--hhhHHHHHHHHH
Q 038936 332 LIAG-YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT--ADHYACIVDLLA 408 (476)
Q Consensus 332 l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 408 (476)
.+.. +...|++++|..+|++.++.. +.+...+..++..+.+.|+.++|..+|+++......+|+ ...|...+....
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 2211 335788888888888887753 235667777888888888888888888888865333332 336777777777
Q ss_pred hcCChhhHHHHHhhC
Q 038936 409 RSGRFHEAEDVISKM 423 (476)
Q Consensus 409 ~~g~~~~A~~~~~~~ 423 (476)
+.|+.+.+.++.+++
T Consensus 475 ~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 475 NIGDLASILKVEKRR 489 (530)
T ss_dssp HSSCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 888888888887775
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-16 Score=157.15 Aligned_cols=367 Identities=13% Similarity=0.098 Sum_probs=264.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHccc-c-----cchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038936 60 GVFISNCLLDMYAKCGNISDAQTLFDEMQE-R-----DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGY 133 (476)
Q Consensus 60 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 133 (476)
++.--......|...|.+.+|+++++++.- + +...-+.++...++. +..+..+..+++..-+ ...+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 334445667888899999999999998762 2 224455566666666 5566666666655333 44477788
Q ss_pred HhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHH-HhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHH
Q 038936 134 VRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAV-SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212 (476)
Q Consensus 134 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 212 (476)
...|.+++|..+|++... +...+..+ ...+++++|.++.++. .++.+|..+..++...|++++
T Consensus 1060 i~lglyEEAf~IYkKa~~----------~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV----------NTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC----------HHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 889999999999987632 12212222 2678888888888754 346678889999999999999
Q ss_pred HHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCC
Q 038936 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292 (476)
Q Consensus 213 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 292 (476)
|+..|.+. .|...|..++.++.+.|++++|.+.+....+.. ++....+.+..+|++.++++....+. + .
T Consensus 1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A 1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence 99999765 666778888999999999999999998877754 33333345777888888887544442 1 3
Q ss_pred CchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 038936 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT 372 (476)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 372 (476)
++...+..+...|...|++++|..+|..+ ..|..+..+|++.|++++|++.+++. .+..+|..+..+|.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence 45556667888899999999999999885 48888999999999999999988876 34577888888888
Q ss_pred ccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhc--CChHHH
Q 038936 373 HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIH--GNLDLA 448 (476)
Q Consensus 373 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--g~~~~A 448 (476)
..|++..|..+... +..+++.+..++..|.+.|.+++|+++++.. +..| ....|..+...+.+. ++..++
T Consensus 1262 e~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred hhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 88888888776543 2335556778888888888888888888774 4444 334565555555544 677777
Q ss_pred HHHHHHHHHcCC-----CCchhHHHHHHhhh
Q 038936 449 KRAAEALFEIEP-----ENPATYVTMANIYA 474 (476)
Q Consensus 449 ~~~~~~~~~~~p-----~~~~~~~~l~~~y~ 474 (476)
.+.|..-..+.| ++...|..+..+|.
T Consensus 1336 lk~f~~rini~k~~r~~e~~~lW~elv~LY~ 1366 (1630)
T 1xi4_A 1336 LELFWSRVNIPKVLRAAEQAHLWAELVFLYD 1366 (1630)
T ss_pred HHHHHHhcccchHhHHHHHHHHHHHHHHHHH
Confidence 777777766666 67777777777764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=159.85 Aligned_cols=278 Identities=13% Similarity=0.103 Sum_probs=139.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhc
Q 038936 38 QNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117 (476)
Q Consensus 38 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 117 (476)
+.|++++|.++++++ +++.+|..++.++.+.|++++|++.|.+ .+|...|..++..+...|++++|.+.++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 567899999999988 2345899999999999999999999976 46777999999999999999999998887
Q ss_pred CCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHH
Q 038936 118 MPQ--RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195 (476)
Q Consensus 118 ~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 195 (476)
..+ +++.+.+.++.+|.+.|++.++.++++ .|+..++..+...|...|.++.|...|..+ .
T Consensus 87 ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 87 ARKKARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp ----------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT---------T
T ss_pred HHHhCccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 765 356788999999999999999988874 367779999999999999999999999876 3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccc
Q 038936 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275 (476)
Q Consensus 196 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (476)
.|..++.++.+.|++++|++.++++ .++.+|..++.+|+..|+++.|......+. ..|+ -...++..|.+.|.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGY 222 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHHHHHHHHHCCC
Confidence 6889999999999999999999999 478999999999999999999966554422 2333 35568889999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhc--CChhhHHHHHccCCC--------CChhhHHHHHHHHHhcCChHHH
Q 038936 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKC--GNVENSKKVFNGMPR--------PDLVSWTSLIAGYAQNGMPDKA 345 (476)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A 345 (476)
++++..+++...... +....+|+-+..+|++- +++.+.++.|..-.. .+...|..++..|...++++.|
T Consensus 223 ~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 223 FEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 999999999998776 66677777777777654 566777777776554 3567899999999999999999
Q ss_pred HHH
Q 038936 346 LEY 348 (476)
Q Consensus 346 ~~~ 348 (476)
...
T Consensus 302 ~~t 304 (449)
T 1b89_A 302 IIT 304 (449)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-19 Score=162.32 Aligned_cols=265 Identities=14% Similarity=0.077 Sum_probs=199.1
Q ss_pred cCCCHHHHHH-HHHhhcc--c-----chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHH
Q 038936 206 KCGSINEARQ-IFDKMVD--R-----DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277 (476)
Q Consensus 206 ~~~~~~~a~~-~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (476)
..|++++|.. .+++... + +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467777777 7775532 1 23456677777888888888888888877764 445667777777777888888
Q ss_pred HHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CC-hhhHHH---------------HHHHHHhc
Q 038936 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PD-LVSWTS---------------LIAGYAQN 339 (476)
Q Consensus 278 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~---------------l~~~~~~~ 339 (476)
.|...++.+.+.. +.+..++..+..+|...|++++|...++++.+ |+ ...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 8888888877765 55667777777888888888888887776653 21 111111 13333488
Q ss_pred CChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH
Q 038936 340 GMPDKALEYFELLLKSGTQP-DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 418 (476)
|++++|+..++++.+..... +..++..++..+...|++++|+..++++... .+.+...+..++.++.+.|++++|++
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999864221 4788899999999999999999999999975 35567889999999999999999999
Q ss_pred HHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----------chhHHHHHHhhh
Q 038936 419 VISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN-----------PATYVTMANIYA 474 (476)
Q Consensus 419 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~y~ 474 (476)
.++++ ...| +...+..++.++...|++++|...+++++++.|++ +.+|..|+.+|.
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 99996 3334 67789999999999999999999999999999988 789999998875
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-18 Score=160.61 Aligned_cols=379 Identities=9% Similarity=0.001 Sum_probs=220.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHccc-----------c-cchHHHHHHHHHHhcCCHHHHHHHHhcCCC-------
Q 038936 60 GVFISNCLLDMYAKCGNISDAQTLFDEMQE-----------R-DVCSYNTMISGFTKGGSLEQARNLFDEMPQ------- 120 (476)
Q Consensus 60 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------- 120 (476)
....|+.+...+...|++++|++.|++..+ + ...+|+.+...|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 456788888888888888888888877642 1 235688888888889998888887776532
Q ss_pred C----CcchHHHHHHHHHhc--CChhHHHHHHHHHHhccCCCCCc-hHHHHHHHHH---HhhhhhhhHHHHHHHHHHcCC
Q 038936 121 R----DNFSWTAMISGYVRY--NQPIEALDLYRMMQNFENSVSNK-FTLSSVLSAV---SAIQCLRLGKEIHGYIMRTGF 190 (476)
Q Consensus 121 ~----~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~ 190 (476)
+ .+.++.....++... +++++|++.|++.... .|+. ..+..+..++ ...++.+.|.+.++..++..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 233455555555544 4688999999988863 3333 3333333333 33455677888888877665
Q ss_pred CchHHHHHHHHHHHHc----CCCHHHHHHHHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhH
Q 038936 191 DSDEVVWSALSDMYGK----CGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263 (476)
Q Consensus 191 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 263 (476)
+.+..++..+...+.. .|++++|.+.+++... .+...+..+...|...|++++|...+.+..+.. +.+..++
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 4445555555544443 4567788888887643 345567778888888888888888888887754 3344455
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcC
Q 038936 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNG 340 (476)
Q Consensus 264 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 340 (476)
..+...+...+....+.. . ..........+.++.|...+++..+ .+...+..+...|...|
T Consensus 285 ~~lg~~y~~~~~~~~~~~----------~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLR----------E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhHH----------H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 554444432211110000 0 0001111112335666766666543 45567888999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCcHH--HHHHHHH-HHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH
Q 038936 341 MPDKALEYFELLLKSGTQPDHI--VFVGVLT-ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417 (476)
Q Consensus 341 ~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 417 (476)
++++|+..|++.++....|... .+..+.. .....|+.++|++.|+++.+ +.|+....... ...+.
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~ 416 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQ 416 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHH
Confidence 9999999999999865433322 2333332 23567999999999999885 35543222222 22334
Q ss_pred HHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 038936 418 DVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMAN 471 (476)
Q Consensus 418 ~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 471 (476)
+++++. ...| +..+|..++..+...|++++|++.|+++++++|.+|.+...+|.
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 444443 2233 66789999999999999999999999999999999988877763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-19 Score=159.82 Aligned_cols=243 Identities=11% Similarity=0.034 Sum_probs=160.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhh
Q 038936 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307 (476)
Q Consensus 228 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 307 (476)
+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|+++.|...++.+.+.. +.+...+..+..+|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 4444444444444444444444444432 2233444444444444455555555554444443 3334444445555555
Q ss_pred cCChhhHHHHHccCCC--C-----------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhc
Q 038936 308 CGNVENSKKVFNGMPR--P-----------DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-PDHIVFVGVLTACTH 373 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~--~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 373 (476)
.|++++|...|+++.+ | ....+..+...+...|++++|+..++++.+.... ++..++..++..+..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 5555555555544432 1 1233445678889999999999999999986522 157788899999999
Q ss_pred cCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHH
Q 038936 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRA 451 (476)
Q Consensus 374 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 451 (476)
.|++++|++.++++.+. .+.+..++..++.+|.+.|++++|++.|+++ ...| +..++..++.++...|++++|...
T Consensus 226 ~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999975 3556788999999999999999999999986 4444 577899999999999999999999
Q ss_pred HHHHHHcCCC------------CchhHHHHHHhhh
Q 038936 452 AEALFEIEPE------------NPATYVTMANIYA 474 (476)
Q Consensus 452 ~~~~~~~~p~------------~~~~~~~l~~~y~ 474 (476)
+++++++.|+ +..++..|+.++.
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS 338 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHH
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHH
Confidence 9999999887 3677888887764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.4e-18 Score=153.53 Aligned_cols=194 Identities=14% Similarity=0.163 Sum_probs=97.8
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-Hh-----
Q 038936 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN-AF----- 261 (476)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~----- 261 (476)
+.+..++..++..+...|++++|+..|+++.+ .+..++..+..+|...|++++|...++++.+.. |+ ..
T Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 173 (365)
T 4eqf_A 96 PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNK 173 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC----
T ss_pred cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhh
Confidence 34455666777777777777777777777643 234566777777777777777777777776643 22 11
Q ss_pred -----hHHHHHHHHhccccHHHHHHHHHHHHHhCCCC--chhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHH
Q 038936 262 -----TFAGVLNACADHAAEELGKQVHGYMTRIGYDP--YSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTS 331 (476)
Q Consensus 262 -----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ 331 (476)
.+..+...+...|++++|...++++.+.. +. +..++..+...|...|++++|...|+++.+ .+..+|..
T Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 252 (365)
T 4eqf_A 174 KGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNR 252 (365)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 12223455666677777777777666653 22 344444444444444444444444443331 22334444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 038936 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 332 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 388 (476)
+..+|...|++++|+..|+++.+.. +.+..++..+..+|...|++++|...|+++.
T Consensus 253 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 253 LGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444444444444444444432 1123334444444444444444444444444
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=154.59 Aligned_cols=276 Identities=9% Similarity=0.000 Sum_probs=163.0
Q ss_pred chHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc---cchhhHHHHHHHH
Q 038936 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRY 235 (476)
Q Consensus 159 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 235 (476)
...+......+...|++++|..+++.+.+.. +.+...+..++..+...|++++|...++++.+ .+...+..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 3445666666777777777777777776654 44556666677777777777777777777643 2345566667777
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHH-HH-HhhhcCChhh
Q 038936 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL-VH-MYSKCGNVEN 313 (476)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~ 313 (476)
...|++++|...++++.+.. +.+...+..+...+ |+......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 77777777777777776653 22222222220000 000000001 11 2444444555
Q ss_pred HHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 314 SKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 314 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
|...++++.+ .+...+..+...+...|++++|+..++++.+.. +.+..++..++..+...|++++|.+.++++.+.
T Consensus 157 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 157 CRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5554444432 234556666666667777777777777766653 234556666777777777777777777777654
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-------------cHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038936 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-------------DKFLWASLLGGCRIHGNLDLAKRAAEALF 456 (476)
Q Consensus 391 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 456 (476)
.+.+...+..++.+|.+.|++++|.+.++++ ...| +...|..++.++...|++++|...+++++
T Consensus 236 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 236 --NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred --CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2345566677777777777777777777664 2122 35567777777777788877777777766
Q ss_pred HcCCC
Q 038936 457 EIEPE 461 (476)
Q Consensus 457 ~~~p~ 461 (476)
+..|+
T Consensus 314 ~~~~~ 318 (327)
T 3cv0_A 314 EPFAK 318 (327)
T ss_dssp HHHHH
T ss_pred Hhcch
Confidence 65443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-17 Score=146.13 Aligned_cols=275 Identities=11% Similarity=-0.040 Sum_probs=209.0
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHH
Q 038936 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201 (476)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 201 (476)
+...+..+...+...|++++|+.+|+++... .+.+...+..+..++...|+++.|.+.++.+.+.. +.+..++..++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 4456788889999999999999999999862 23466778888899999999999999999999875 55778899999
Q ss_pred HHHHcCCCHHHHHHHHHhhcccchh---hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHH--HHhccccH
Q 038936 202 DMYGKCGSINEARQIFDKMVDRDVV---SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN--ACADHAAE 276 (476)
Q Consensus 202 ~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~ 276 (476)
..+...|++++|...++++.+.++. .+..+.. ..|+......+.. .+...|++
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQ----------------------ADVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhH----------------------HHHHHHHHHHHHHhHHHHHcccH
Confidence 9999999999999999998654332 2222210 0111122222212 25667777
Q ss_pred HHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038936 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLL 353 (476)
Q Consensus 277 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 353 (476)
+.|...++.+.+.. +.+...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|+..++++.
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777777764 44666777777888888888888888877653 356678889999999999999999999998
Q ss_pred HcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC----------ChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 354 KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY----------TADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 354 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
+.. +.+..++..+...+...|++++|.+.++++........ +...+..++.++.+.|++++|..++++.
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 864 34577888899999999999999999999987521100 4678889999999999999999999875
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-16 Score=145.42 Aligned_cols=368 Identities=11% Similarity=0.001 Sum_probs=243.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----C---CCCChhhHHHHHHHHHhcCChHHHHHHHHHccc-----
Q 038936 23 HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSS-----G---FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE----- 89 (476)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----- 89 (476)
......||.+..++...|++++|++.|++..+. + -+....+|+.+..+|...|++++|...++++.+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567999999999999999999999987652 1 122356788899999999999999999988753
Q ss_pred ------ccchHHHHHHHHHHhc--CCHHHHHHHHhcCCC--C-CcchHHHHHHH---HHhcCChhHHHHHHHHHHhccCC
Q 038936 90 ------RDVCSYNTMISGFTKG--GSLEQARNLFDEMPQ--R-DNFSWTAMISG---YVRYNQPIEALDLYRMMQNFENS 155 (476)
Q Consensus 90 ------~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 155 (476)
....++..+..++... +++++|...|++..+ | ++..+..+..+ +...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--
Confidence 1234666666666554 579999999998764 3 44455555444 445688899999999888632
Q ss_pred CCCchHHHHHHHHH----HhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc---chhhH
Q 038936 156 VSNKFTLSSVLSAV----SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSW 228 (476)
Q Consensus 156 ~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~ 228 (476)
+.+...+..+...+ ...++++.|.+.++...... +.+..++..+...|...|++++|+..+++..+. +..++
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 284 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHH
Confidence 22334444444333 34577899999999988775 566778889999999999999999999998653 34456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhc
Q 038936 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308 (476)
Q Consensus 229 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (476)
..+..+|...+... .... .. .........+..+.|...++...+.. +.+...+..+...|...
T Consensus 285 ~~lg~~y~~~~~~~---------~~~~-~~------~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQV---------MNLR-EN------GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh---------hhHH-HH------HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 66666654321111 1100 00 00011122344677888888887775 56667788889999999
Q ss_pred CChhhHHHHHccCCC--CChh----hHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHH
Q 038936 309 GNVENSKKVFNGMPR--PDLV----SWTSLIA-GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381 (476)
Q Consensus 309 ~~~~~a~~~~~~~~~--~~~~----~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 381 (476)
|++++|+..|++..+ ++.. .+..+.. .+...|++++|+..|++.++. .|+..... +....+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHH
Confidence 999999999987753 3322 2233332 245789999999999999984 45543322 2233445
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
+++++.... .|.+..++..++.+|...|++++|++.|+++
T Consensus 417 ~~~~~~l~~--~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 417 KIAKMRLSK--NGADSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp HHHHHHHHH--CC-CTTHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 566666654 3567788999999999999999999999996
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.7e-18 Score=145.39 Aligned_cols=245 Identities=10% Similarity=0.007 Sum_probs=157.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccc
Q 038936 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN-AFTFAGVLNACADHA 274 (476)
Q Consensus 196 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 274 (476)
....+.++|...|+++.|+..++....++..++..+...+...++.++|++.++++...+..|+ ...+..+...+...|
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 3344566666677777766666554334445566666666666677777777777666554343 334444445666677
Q ss_pred cHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CChhhH---HHHHHHHHhcCChHHHHHHH
Q 038936 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLVSW---TSLIAGYAQNGMPDKALEYF 349 (476)
Q Consensus 275 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~---~~l~~~~~~~~~~~~A~~~~ 349 (476)
++++|...++. +.+...+..++.++.+.|++++|...|+++.+ |+.... ...+..+...|++++|+.+|
T Consensus 116 ~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~ 189 (291)
T 3mkr_A 116 NPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIF 189 (291)
T ss_dssp CHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred CHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 77777776665 45556666667777777777777777776653 332211 11223344558889999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhh-HHHHHhhC-CCCC
Q 038936 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE-AEDVISKM-PMKP 427 (476)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~~p 427 (476)
+++.+.. +.+...++.+..++...|++++|.+.++++.+. .|.+..++..++..+...|+.++ +.++++++ ...|
T Consensus 190 ~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 190 QEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 9988873 457778888888888999999999999988875 35567778888888888888876 56777775 4455
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHH
Q 038936 428 DKFLWASLLGGCRIHGNLDLAKRAA 452 (476)
Q Consensus 428 ~~~~~~~l~~~~~~~g~~~~A~~~~ 452 (476)
+..... ....+.+.++++..-|
T Consensus 267 ~~~~~~---d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 267 SHPFIK---EYRAKENDFDRLVLQY 288 (291)
T ss_dssp TCHHHH---HHHHHHHHHHHHHHHH
T ss_pred CChHHH---HHHHHHHHHHHHHHHc
Confidence 443222 2233444555554433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-17 Score=142.28 Aligned_cols=234 Identities=10% Similarity=-0.019 Sum_probs=162.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCC--Cc----hhhHHHH
Q 038936 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD--PY----SFAASAL 301 (476)
Q Consensus 228 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 301 (476)
+..+...+...|++++|...|++..+.. .+...+..+...+...|+++.|...++.+.+.... ++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3444444455555555555555544443 44444444445555555555555555554443210 01 3455555
Q ss_pred HHHhhhcCChhhHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhh
Q 038936 302 VHMYSKCGNVENSKKVFNGMPR--PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379 (476)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 379 (476)
...+...|++++|...|+++.+ |+ ...+...|++++|+..++++.... +.+...+..++..+...|++++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHH
Confidence 6666666666666666665543 33 234666778899999999988853 2345577888888999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 380 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
|...++++.+. .+.+...+..++.++.+.|++++|++.++++ ...| +...|..++.++...|++++|...++++++
T Consensus 158 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999875 3556788899999999999999999999986 3334 577899999999999999999999999999
Q ss_pred cC------CCCchhHHHHHHhh
Q 038936 458 IE------PENPATYVTMANIY 473 (476)
Q Consensus 458 ~~------p~~~~~~~~l~~~y 473 (476)
+. |++..++..|..++
T Consensus 236 ~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHHHHTTTTHHHHHHHHHHTT
T ss_pred hChhhcCCCchHHHHHHHHHhh
Confidence 99 98888888887654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-17 Score=141.01 Aligned_cols=243 Identities=12% Similarity=0.008 Sum_probs=136.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HhhHHHHHHHHh
Q 038936 197 WSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN--AFTFAGVLNACA 271 (476)
Q Consensus 197 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 271 (476)
+......+...|++++|+..|++..+. +...+..+..++...|++++|...+++..+.+..|+ ...+..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 344556666666666666666666332 233566666666666666666666666665321111 112455555555
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038936 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351 (476)
Q Consensus 272 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 351 (476)
..|+++.|...++...+.. +.+... +..+...|...|++++|+..+++
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~-------------------------------~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDM-------------------------------YGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHH-------------------------------HHHHHHHHHHTTCHHHHHHHHGG
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHH-------------------------------HHHHHHHHHHccCHHHHHHHHHH
Confidence 6666666666666655543 233344 44444445555555555555555
Q ss_pred HHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC---hhhHHHHHhhC----C
Q 038936 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR---FHEAEDVISKM----P 424 (476)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~ 424 (476)
..+.. +.+...+..+...+...+++++|.+.++++.+. .+.+...+..++.++...|+ +++|...++++ .
T Consensus 134 al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 134 QIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp GCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred HhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 44431 122333433442222333555555555555543 12234445555555555555 55555555543 1
Q ss_pred CCCc------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 425 MKPD------KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 425 ~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
..|+ ...|..++..+...|++++|...++++++++|+|+.++..+..+..
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 1122 2467788888999999999999999999999999999998877653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-16 Score=140.21 Aligned_cols=244 Identities=11% Similarity=0.073 Sum_probs=189.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccc-HHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 038936 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA-EELGKQVHGYMTRIGYDPYSFAASALVHM 304 (476)
Q Consensus 226 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (476)
..|..+...+...|++++|+..++++++.. +-+...|..+...+...|+ +++|+..++++.+.. +.+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 356666677777777777777777777654 3345666667777777775 788888887777775 5567777788888
Q ss_pred hhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc-cCchhhH
Q 038936 305 YSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH-AGLVDKG 380 (476)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a 380 (476)
+...|++++|+..|+++.+ .+...|..+..++...|++++|+..++++++.. +-+...|..+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 8888888888888887774 456788888999999999999999999999865 3356778888888888 5665777
Q ss_pred -----HHHHHHHHHhcCCCCChhhHHHHHHHHHhcC--ChhhHHHHHhhCCCCC-cHHHHHHHHHHHHhcC--------C
Q 038936 381 -----LQYFHSIKEKHGLTYTADHYACIVDLLARSG--RFHEAEDVISKMPMKP-DKFLWASLLGGCRIHG--------N 444 (476)
Q Consensus 381 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g--------~ 444 (476)
++.+++++.. .+-+...|..++.++.+.| ++++|++.+.++...| +...+..++..|...| +
T Consensus 255 ~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 255 VLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 4888888864 3446678888898998888 6899999888875445 5567888888888764 3
Q ss_pred -hHHHHHHHHHH-HHcCCCCchhHHHHHHhhh
Q 038936 445 -LDLAKRAAEAL-FEIEPENPATYVTMANIYA 474 (476)
Q Consensus 445 -~~~A~~~~~~~-~~~~p~~~~~~~~l~~~y~ 474 (476)
+++|+++|+++ ++++|.+...|..++..+.
T Consensus 333 ~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 333 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 58999999999 9999999999999988765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.4e-16 Score=142.21 Aligned_cols=373 Identities=12% Similarity=0.093 Sum_probs=182.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh---HHHHHHHHHcccccchHHHHHHHHHHhcC--
Q 038936 32 LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNI---SDAQTLFDEMQERDVCSYNTMISGFTKGG-- 106 (476)
Q Consensus 32 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~g-- 106 (476)
+...+.+.|++++|.++|++..+.| +...+..+...|...|+. ++|...|+...+.++..+..+...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4455566677777777777776655 333444455555555655 66666666665555555555555444433
Q ss_pred ---CHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHH
Q 038936 107 ---SLEQARNLFDEMPQR-DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182 (476)
Q Consensus 107 ---~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 182 (476)
++++|...|++..++ ++..+..+...|...+..+++.+ +.+.+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~---------------------------------a~~~~ 132 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVN---------------------------------AQQQI 132 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCC---------------------------------HHHHH
T ss_pred CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHH---------------------------------HHHHH
Confidence 455566655555433 33445555555544433222222 22222
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHcCC----CHHHHHHHHHhhcccchhhHHHHHHHHHhcC---ChhHHHHHHHHHHHcC
Q 038936 183 GYIMRTGFDSDEVVWSALSDMYGKCG----SINEARQIFDKMVDRDVVSWTAMIGRYFQEG---RREEGFALFSELIKSG 255 (476)
Q Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 255 (476)
......|. ......+...|...+ +.+.+..+++.....++..+..+...|...| +.++|+..|++..+.|
T Consensus 133 ~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 133 SQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp HHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence 22222332 123334445555444 3344444555555555556666666666666 6667777777766665
Q ss_pred CCCCHhhHHHHHHHHhcc----ccHHHHHHHHHHHHHhCCCCchhhHHHHHHH-h--hhcCChhhHHHHHccCCC-CChh
Q 038936 256 IRPNAFTFAGVLNACADH----AAEELGKQVHGYMTRIGYDPYSFAASALVHM-Y--SKCGNVENSKKVFNGMPR-PDLV 327 (476)
Q Consensus 256 ~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~-~~~~ 327 (476)
.++...+..+...+... +++++|...++... . .++..+..+..+ | ...+++++|...|++..+ .++.
T Consensus 210 -~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~ 284 (452)
T 3e4b_A 210 -TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPR 284 (452)
T ss_dssp -CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHH
T ss_pred -CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 34444434444444333 56667777776665 2 233344444444 2 346667777777766553 3455
Q ss_pred hHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc----cCchhhHHHHHHHHHHhcCCCCChh
Q 038936 328 SWTSLIAGYAQNG-----MPDKALEYFELLLKSGTQPDHIVFVGVLTACTH----AGLVDKGLQYFHSIKEKHGLTYTAD 398 (476)
Q Consensus 328 ~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 398 (476)
.+..+...|. .| ++++|+..|++.. .| +......+...|.. ..++++|..+|++..+. | +..
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g---~~~ 355 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-G---QNS 355 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-T---CTT
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-C---hHH
Confidence 5666666665 34 6777777777665 22 44455555555544 33677777777776653 2 234
Q ss_pred hHHHHHHHHHh----cCChhhHHHHHhhCCCC--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 399 HYACIVDLLAR----SGRFHEAEDVISKMPMK--PDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 399 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
....|+.+|.. ..+.++|...|+.+... ++.......+......++..+|....++..+
T Consensus 356 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 356 ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45566666653 34667777777765222 2222222222222223456666666665554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.4e-16 Score=141.83 Aligned_cols=370 Identities=10% Similarity=-0.008 Sum_probs=211.8
Q ss_pred hhhhcCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----
Q 038936 4 ILCNQRRLKEALQILHQIS-HPSPSIYSSLIQFCRQNRAL---EEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG---- 75 (476)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 75 (476)
.+.+.|++++|+++|+++. ..++.++..+...+...|++ ++|..+|++..+. ++..+..+...+...|
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCC
Confidence 4678899999999999985 45666777777777778888 8999999998864 5566666776555555
Q ss_pred -ChHHHHHHHHHcccc-cchHHHHHHHHHHhcCCHHH---HHHHHhcCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038936 76 -NISDAQTLFDEMQER-DVCSYNTMISGFTKGGSLEQ---ARNLFDEMPQ-RDNFSWTAMISGYVRYNQPIEALDLYRMM 149 (476)
Q Consensus 76 -~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 149 (476)
++++|...|++..++ ++..+..|...|...+..++ +.+.+....+ .++.....+...|...+.++++.+....+
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 788999999998764 55678888888887665444 3444443332 36677888888888888666655553333
Q ss_pred HhccCCCCCchHHHHHHHHHHhhh---hhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcC----CCHHHHHHHHHhhcc
Q 038936 150 QNFENSVSNKFTLSSVLSAVSAIQ---CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC----GSINEARQIFDKMVD 222 (476)
Q Consensus 150 ~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~ 222 (476)
.. .-...+...+..+...+...| +.++|.+.++...+.| +++...+..+...|... +++++|+.+|+....
T Consensus 168 ~~-~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~ 245 (452)
T 3e4b_A 168 CK-AALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAP 245 (452)
T ss_dssp HH-HHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGG
T ss_pred HH-HHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcC
Confidence 32 112223336777777777777 8888888888888877 44555555566666554 688888888888773
Q ss_pred cchhhHHHHHHH-H--HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccc-----cHHHHHHHHHHHHHhCCCCc
Q 038936 223 RDVVSWTAMIGR-Y--FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA-----AEELGKQVHGYMTRIGYDPY 294 (476)
Q Consensus 223 ~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~ 294 (476)
.++..+..+... + ...+++++|..+|++..+.| +...+..+...|. .| ++++|...|+... +.+
T Consensus 246 g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~ 317 (452)
T 3e4b_A 246 GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GRE 317 (452)
T ss_dssp GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTC
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCC
Confidence 345566666666 3 45678888888888877765 3444444444444 33 6666666666655 223
Q ss_pred hhhHHHHHHHhhh----cCChhhHHHHHccCCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCcHHHHH
Q 038936 295 SFAASALVHMYSK----CGNVENSKKVFNGMPR-PDLVSWTSLIAGYAQ----NGMPDKALEYFELLLKSGTQPDHIVFV 365 (476)
Q Consensus 295 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 365 (476)
+.....+..+|.. ..++++|...|++..+ .++.....+...|.. ..++.+|..+|+...+.|. ++.....
T Consensus 318 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l 396 (452)
T 3e4b_A 318 VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLA 396 (452)
T ss_dssp HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHH
Confidence 3444445555544 2356666666655543 334445555555543 3455666666666665552 2222222
Q ss_pred HHHHHHhccCchhhHHHHHHHHH
Q 038936 366 GVLTACTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 366 ~l~~~~~~~~~~~~a~~~~~~~~ 388 (476)
..+......++..+|..+.++..
T Consensus 397 ~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 397 TQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHH
Confidence 22222233344445555544444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-15 Score=128.22 Aligned_cols=228 Identities=14% Similarity=0.032 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhhccc-chhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 038936 194 EVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVSWTAMIGRYFQ----EGRREEGFALFSELIKSGIRPNAFTFAGVLN 268 (476)
Q Consensus 194 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 268 (476)
..++..+...+...|++++|+..|++..++ +...+..+...|.. .+++++|...|++..+.+ +
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~--------- 73 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---Y--------- 73 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C---------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---C---------
Confidence 344445555555555555555555555433 22344444455555 555555555555554433 3
Q ss_pred HHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhh----cCChhhHHHHHccCCC-CChhhHHHHHHHHHh----c
Q 038936 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK----CGNVENSKKVFNGMPR-PDLVSWTSLIAGYAQ----N 339 (476)
Q Consensus 269 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~ 339 (476)
+..+..+...|.. .+++++|...|++..+ .++..+..+...|.. .
T Consensus 74 --------------------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 74 --------------------------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp --------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSC
T ss_pred --------------------------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcc
Confidence 3334444444444 5555555555554432 345566677777777 8
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc----cCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cC
Q 038936 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH----AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR----SG 411 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 411 (476)
+++++|+..|++..+.+ +...+..+...+.. .+++++|...++++.+. .+...+..++.+|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCc
Confidence 88999999999988865 45566677777777 88999999999998864 245678888999998 99
Q ss_pred ChhhHHHHHhhCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhH
Q 038936 412 RFHEAEDVISKMPMKPDKFLWASLLGGCRI----HGNLDLAKRAAEALFEIEPENPATY 466 (476)
Q Consensus 412 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~ 466 (476)
++++|++.++++....+...+..+...+.. .+++++|...++++++.+|+++..+
T Consensus 201 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999886222336677888888888 8999999999999999999764433
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.8e-16 Score=127.63 Aligned_cols=179 Identities=15% Similarity=0.052 Sum_probs=103.3
Q ss_pred CchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 038936 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369 (476)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 369 (476)
++...+..+...+...|++++|...|++..+ .++..+..+...+.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3444445555555555555555555555443 233455555666666666666666666666543 223445555555
Q ss_pred HHhcc-----------CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHHHHHH
Q 038936 370 ACTHA-----------GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLLG 437 (476)
Q Consensus 370 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 437 (476)
++... |++++|+..++++.+. .|.+...+..++.+|...|++++|+..|+++ ....+...+..++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Confidence 66666 6666666666666653 2334555666666666666666666666664 11145556666666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 438 GCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 438 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
++...|++++|+..|+++++++|+++.++..++.+|.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~ 196 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALL 196 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 6666666666666666666666666666666666554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-16 Score=132.83 Aligned_cols=211 Identities=14% Similarity=0.094 Sum_probs=144.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhh
Q 038936 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306 (476)
Q Consensus 227 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 306 (476)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++.|...++.+.+..
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---------------- 87 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD---------------- 87 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------
Confidence 44455555555556666665555555432 2233444444444444555555555544444331
Q ss_pred hcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHH
Q 038936 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386 (476)
Q Consensus 307 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 386 (476)
..+...+..+...+...|++++|+..++++.+.. +.+...+..++..+...|++++|.+.+++
T Consensus 88 ----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (243)
T 2q7f_A 88 ----------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQR 150 (243)
T ss_dssp ----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred ----------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 1245567777888888899999999999988864 34667788888889999999999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 038936 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMK-PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 387 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 464 (476)
+.+. .+.+...+..++.++.+.|++++|.+.++++ ... .+...+..++..+...|++++|...++++++++|+++.
T Consensus 151 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 151 AVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence 8875 3456778889999999999999999999886 323 35778899999999999999999999999999999999
Q ss_pred hHHHHHHhh
Q 038936 465 TYVTMANIY 473 (476)
Q Consensus 465 ~~~~l~~~y 473 (476)
++..++.+.
T Consensus 229 ~~~~~~~l~ 237 (243)
T 2q7f_A 229 ALHAKKLLG 237 (243)
T ss_dssp HHHHHTC--
T ss_pred HHHHHHHHH
Confidence 998887664
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-15 Score=127.20 Aligned_cols=210 Identities=10% Similarity=0.001 Sum_probs=159.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 038936 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304 (476)
Q Consensus 225 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (476)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~------------ 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-S------------ 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-c------------
Confidence 4567777888888888888888888887764 3455666666667777777777777777666543 1
Q ss_pred hhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCchhhHHHH
Q 038936 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP-DHIVFVGVLTACTHAGLVDKGLQY 383 (476)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 383 (476)
.+...+..+...|...|++++|++.++++.+.+..| +...+..++..+...|++++|.+.
T Consensus 103 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 103 -------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 233455666777777888888888888877632334 455677788888888999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038936 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMK-PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 461 (476)
++++.+. .+.+...+..++.++...|++++|...++++ ... .+...+..+...+...|++++|.+.++++++..|+
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 9888865 2445777888899999999999999999886 333 35667888888899999999999999999999999
Q ss_pred CchhHHHH
Q 038936 462 NPATYVTM 469 (476)
Q Consensus 462 ~~~~~~~l 469 (476)
++.....+
T Consensus 242 ~~~~~~~l 249 (252)
T 2ho1_A 242 SLEYQEFQ 249 (252)
T ss_dssp SHHHHHHH
T ss_pred CHHHHHHH
Confidence 88776544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-15 Score=126.02 Aligned_cols=91 Identities=18% Similarity=0.072 Sum_probs=36.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (476)
.+..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|+..|+++.+. .|.+...+..++.++
T Consensus 120 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~ 195 (217)
T 2pl2_A 120 LHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASAL 195 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 33444444444455555555555544443 34444444444555555555555555554432 122334444444444
Q ss_pred HhcCChhhHHHHHhh
Q 038936 408 ARSGRFHEAEDVISK 422 (476)
Q Consensus 408 ~~~g~~~~A~~~~~~ 422 (476)
.+.|++++|++.+++
T Consensus 196 ~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 196 LLKGKAEEAARAAAL 210 (217)
T ss_dssp TC-------------
T ss_pred HHccCHHHHHHHHHH
Confidence 445555555444443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-14 Score=124.11 Aligned_cols=230 Identities=9% Similarity=-0.019 Sum_probs=159.0
Q ss_pred chHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc--cchh----hHHHHH
Q 038936 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD--RDVV----SWTAMI 232 (476)
Q Consensus 159 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~~l~ 232 (476)
...+......+...|+++.|...++..++.. +.+...+..+...+...|++++|+..+++..+ ++.. .|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455667778889999999999999999875 44556788899999999999999999999866 3333 378899
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChh
Q 038936 233 GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312 (476)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 312 (476)
..+...|++++|...|++..+.. +.+...+..+...+...|+++.|...++...+.. +.+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~----------------- 142 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDP----------------- 142 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCH-----------------
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcH-----------------
Confidence 99999999999999999999865 3455677777777777777777777766665542 2222
Q ss_pred hHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc---hhhHHHHHHHHHH
Q 038936 313 NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL---VDKGLQYFHSIKE 389 (476)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 389 (476)
..|..+...+...+++++|+..|+++.+.. +.+...+..+..++...|+ +++|...++++.+
T Consensus 143 --------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 143 --------------KVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp --------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 334444422223336677777777776643 2234555556666666666 6667777776665
Q ss_pred hcCCCCCh------hhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 390 KHGLTYTA------DHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 390 ~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
.....|+. ..+..++..|.+.|++++|.+.++++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 247 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43222332 45666777777777777777777765
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.8e-15 Score=123.55 Aligned_cols=211 Identities=11% Similarity=0.026 Sum_probs=148.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 038936 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304 (476)
Q Consensus 225 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (476)
+..+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++.|...++.+.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 72 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------
Confidence 3445555555666666666666666555543 2234444444444555555555555554444332
Q ss_pred hhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCchhhHHH
Q 038936 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN-GMPDKALEYFELLLKSGTQPD-HIVFVGVLTACTHAGLVDKGLQ 382 (476)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 382 (476)
..+...+..+...+... |++++|+..++++.+.+..|+ ...+..++.++...|++++|..
T Consensus 73 ------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 73 ------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 12445667777888888 889999999988887322333 5677788888999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCC--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMK--PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
.++++.+. .+.+...+..++.++.+.|++++|.+.++++ ... .+...+..+...+...|+.++|...++.+.+..
T Consensus 135 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 135 YLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 99998875 3445778888999999999999999999886 222 356667777777888999999999999999999
Q ss_pred CCCchhHHHHH
Q 038936 460 PENPATYVTMA 470 (476)
Q Consensus 460 p~~~~~~~~l~ 470 (476)
|+++.+...+.
T Consensus 213 p~~~~~~~~l~ 223 (225)
T 2vq2_A 213 PYSEELQTVLT 223 (225)
T ss_dssp TTCHHHHHHHC
T ss_pred CCCHHHHHHhc
Confidence 99988776654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.8e-15 Score=127.26 Aligned_cols=198 Identities=10% Similarity=-0.077 Sum_probs=119.7
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhc
Q 038936 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQN 339 (476)
Q Consensus 263 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 339 (476)
+..+...+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...|+++.+ .+...+..+...|...
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 124 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 124 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh
Confidence 3333344444444444444444444432 23344444455555555555555555554442 2455666777777777
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 038936 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 419 (476)
|++++|+..++++.+.. |+.......+..+...|++++|...+++.... .+++... ..++..+...++.++|.+.
T Consensus 125 g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 125 GRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWG-WNIVEFYLGNISEQTLMER 199 (275)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTH-HHHHHHHTTSSCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHH-HHHHHHHHHhcCHHHHHHH
Confidence 88888888888877743 44444444444556667888888888777764 2333333 3366666777777778887
Q ss_pred HhhC-CCCCc-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 038936 420 ISKM-PMKPD-----KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATY 466 (476)
Q Consensus 420 ~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 466 (476)
++++ ...|+ ...+..++..+...|++++|...++++++.+|++...+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 252 (275)
T 1xnf_A 200 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 252 (275)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH
Confidence 7774 33332 45677777788888888888888888888888776544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-12 Score=123.10 Aligned_cols=417 Identities=9% Similarity=0.041 Sum_probs=248.0
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc--c-cchHHHHHHHHHHhcCC---HHHHHHHHhc
Q 038936 44 EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE--R-DVCSYNTMISGFTKGGS---LEQARNLFDE 117 (476)
Q Consensus 44 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~---~~~a~~~~~~ 117 (476)
+-...|+..+..+ +-|..+|..++..+...+.++.+..+|+.+.. | ....|...+..-.+.|+ ++.+..+|++
T Consensus 50 d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp CHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 3344444444443 23566666666666666666666666666554 2 23445555555555555 6666666665
Q ss_pred CCC-----CCcchHHHHHHHHHhcCCh--------hHHHHHHHHHHhccCC-CCCc-hHHHHHHHHHH---------hhh
Q 038936 118 MPQ-----RDNFSWTAMISGYVRYNQP--------IEALDLYRMMQNFENS-VSNK-FTLSSVLSAVS---------AIQ 173 (476)
Q Consensus 118 ~~~-----~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~~~~~-~~~~-~~~~~ll~~~~---------~~~ 173 (476)
... +++..|...+....+.++. +...++|+.....-|. .|+. ..|...+.... ..+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 543 3344455555444443332 2233555555443344 3332 33333333221 233
Q ss_pred hhhhHHHHHHHHHHcCCCchHHHHHHHH---HHH----------HcCCCHHHHHHHHHhh------ccc-----------
Q 038936 174 CLRLGKEIHGYIMRTGFDSDEVVWSALS---DMY----------GKCGSINEARQIFDKM------VDR----------- 223 (476)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~----------~~~~~~~~a~~~~~~~------~~~----------- 223 (476)
+.+.+..+|+..+......-..+|.... ... -...+++.|...+.++ ...
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 4555666666655321111122222111 110 0011233344444332 000
Q ss_pred ------c------hhhHHHHHHHHHhcC-------ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHH-HHH
Q 038936 224 ------D------VVSWTAMIGRYFQEG-------RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK-QVH 283 (476)
Q Consensus 224 ------~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~ 283 (476)
+ ...|...+.---..+ ..+.+..+|++.+..- +.....|......+...|+.+.|. .++
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 0 122333333222221 1234556777777653 446667777777777788888886 999
Q ss_pred HHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC-------------CC------------hhhHHHHHHHHHh
Q 038936 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-------------PD------------LVSWTSLIAGYAQ 338 (476)
Q Consensus 284 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------~~------------~~~~~~l~~~~~~ 338 (476)
+..... +|.+...+...+....+.|++++|..+|+++.. |+ ...|...+....+
T Consensus 368 ~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 368 KLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp HHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence 888865 356666677788888889999999999887763 31 2357777888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc-cCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH
Q 038936 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH-AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417 (476)
Q Consensus 339 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 417 (476)
.|+.+.|..+|.++++.-..+....|...+..-.+ .++.+.|..+|+..++.+ +.+...+...+......|+.+.|.
T Consensus 447 ~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHH
Confidence 89999999999999885111223344333332233 356999999999999863 456667788888889999999999
Q ss_pred HHHhhC-CCCC----cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 038936 418 DVISKM-PMKP----DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 418 ~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 465 (476)
.+|+++ ...| ....|...+..-...|+.+.+..+.+++.+..|+++.+
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 999996 3333 34588888888888999999999999999999987643
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.3e-15 Score=125.68 Aligned_cols=208 Identities=9% Similarity=0.005 Sum_probs=106.1
Q ss_pred HHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccc----------hhhHHHHHHHHHhc
Q 038936 169 VSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD----------VVSWTAMIGRYFQE 238 (476)
Q Consensus 169 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~~~~l~~~~~~~ 238 (476)
+...|+++.|...++..++.. .+..++..++..+...|++++|+..+++..+.+ ...+..+...+...
T Consensus 15 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (258)
T 3uq3_A 15 FYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL 92 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc
Confidence 333333333333333333333 344455556666666666666666666653311 34556666666777
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHH
Q 038936 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318 (476)
Q Consensus 239 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 318 (476)
|++++|...|++..+.. |+. ..+...|+++.|...++.+.... +.+...
T Consensus 93 ~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--------------------- 141 (258)
T 3uq3_A 93 GDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEE--------------------- 141 (258)
T ss_dssp TCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHH---------------------
T ss_pred ccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHH---------------------
Confidence 77777777777666642 332 23445566666666666665542 222333
Q ss_pred ccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChh
Q 038936 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398 (476)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 398 (476)
+..+...+...|++++|+..++++.+.. +.+..++..+..++...|++++|...++++.+. .+.+..
T Consensus 142 ----------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~ 208 (258)
T 3uq3_A 142 ----------ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVR 208 (258)
T ss_dssp ----------HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred ----------HHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHH
Confidence 3344444445555555555555554432 223444444555555555555555555555543 123344
Q ss_pred hHHHHHHHHHhcCChhhHHHHHhh
Q 038936 399 HYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 399 ~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
.+..++.++.+.|++++|.+.+++
T Consensus 209 ~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 209 AYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455555555555555555555554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-16 Score=152.15 Aligned_cols=128 Identities=11% Similarity=0.116 Sum_probs=109.2
Q ss_pred CCchHHHHHHHHHHHHcCCCHHHHHHHHHhhc-------ccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhh
Q 038936 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMV-------DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262 (476)
Q Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 262 (476)
...-..+|+++|++|++.|++++|.++|++|. .||+.+||+||.+|++.|+.++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997763 57999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccc-HHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHH
Q 038936 263 FAGVLNACADHAA-EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317 (476)
Q Consensus 263 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 317 (476)
|+.+|.++++.|+ .+.|.+++++|.+.|+.||..+|++++....+.+-++.+.++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999999987 478899999999999999999999888766665444444333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.6e-17 Score=153.99 Aligned_cols=122 Identities=11% Similarity=0.140 Sum_probs=78.9
Q ss_pred hhhHHHHHHHhhhcCChhhHHHHHccCC-------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHH
Q 038936 295 SFAASALVHMYSKCGNVENSKKVFNGMP-------RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367 (476)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 367 (476)
..+|+++|.+|++.|++++|..+|+.|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3455566666666666666666654432 366677777777777777777777777777777777777777777
Q ss_pred HHHHhccCch-hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH
Q 038936 368 LTACTHAGLV-DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417 (476)
Q Consensus 368 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 417 (476)
|.++++.|+. ++|.++|++|.++ |+.||..+|+.++....+.+-++...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vr 256 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVH 256 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHG
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHH
Confidence 7777777663 5666777777766 77777777776665555544333333
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-15 Score=138.82 Aligned_cols=289 Identities=12% Similarity=0.026 Sum_probs=164.7
Q ss_pred CCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCch---HHHHHHHHHHHHcCCCHHHHHHHHHhhccc---------c
Q 038936 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD---EVVWSALSDMYGKCGSINEARQIFDKMVDR---------D 224 (476)
Q Consensus 157 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~ 224 (476)
+....+......+...|+++.|...++..++.+.... ..++..+...+...|++++|...+++..+. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444556666777888888888888888877642211 356777888888888888888888776321 1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHhcccc--------------------HHHH
Q 038936 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGI-RPN----AFTFAGVLNACADHAA--------------------EELG 279 (476)
Q Consensus 225 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a 279 (476)
...+..+...+...|++++|...+.+..+... .++ ..++..+...+...|+ ++.|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 34566777788888888888888877765310 011 2345555566666677 6666
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357 (476)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 357 (476)
...+....+.. ..... ....++..+...|...|++++|+..+++..+...
T Consensus 167 ~~~~~~al~~~----------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 167 VDFYEENLSLV----------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHHHHHHHH----------------------------HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------------------------HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 66665544320 00000 0112444555555566666666666655543210
Q ss_pred -CCc----HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChhhHHHHHhhC-C---
Q 038936 358 -QPD----HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT----ADHYACIVDLLARSGRFHEAEDVISKM-P--- 424 (476)
Q Consensus 358 -~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~--- 424 (476)
.++ ..++..+...+...|++++|...++++.....-.++ ..++..++..|...|++++|.+.++++ .
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 011 124555556666666666666666665542111111 334555666666666666666666554 0
Q ss_pred ---CCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CCchhHHHHHHhh
Q 038936 425 ---MKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP------ENPATYVTMANIY 473 (476)
Q Consensus 425 ---~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~y 473 (476)
..+ ...++..++..+...|++++|...+++++++.+ ....++..|+.+|
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 357 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQ 357 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 011 133555666666666777777777776666422 2234555555554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-14 Score=123.36 Aligned_cols=214 Identities=13% Similarity=0.028 Sum_probs=125.0
Q ss_pred cCChhHHHHHHHHHHhccCCC--CCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHH
Q 038936 136 YNQPIEALDLYRMMQNFENSV--SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA 213 (476)
Q Consensus 136 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 213 (476)
.|++++|++.|+++....... .+...+..+...+...|+++.|...++.+.+.. +.+..++..++..+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 456666666666666521111 123445555556666666666666666666553 44566677777777777777777
Q ss_pred HHHHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhC
Q 038936 214 RQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290 (476)
Q Consensus 214 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 290 (476)
+..|+++.+ .+...+..+...+...|++++|...++++.+.. |+.......+..+...|+++.|...+.......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 777777644 235566777777777777777777777776643 433333334444455677777777776666553
Q ss_pred CCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCC-------hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD-------LVSWTSLIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 291 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
+++...+ .++..+...++.++|...++...+.+ ...+..+...|...|++++|...|+++.+
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3333332 34555555555566666665555421 23455555555555555555555555555
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.6e-15 Score=136.75 Aligned_cols=272 Identities=12% Similarity=0.033 Sum_probs=157.7
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHcCCCch---HHHHHHHHHHHHcCCCHHHHHHHHHhhccc---------chhhHH
Q 038936 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD---EVVWSALSDMYGKCGSINEARQIFDKMVDR---------DVVSWT 229 (476)
Q Consensus 162 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~ 229 (476)
+..+...+...|+++.|...++.+++.+.... ..++..+...|...|++++|+..+++..+. ....+.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 33444455566666666666666655532111 134555566666666666666666555321 123455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC----C-CCCHhhHHHHHHHHhcccc-----------------HHHHHHHHHHHH
Q 038936 230 AMIGRYFQEGRREEGFALFSELIKSG----I-RPNAFTFAGVLNACADHAA-----------------EELGKQVHGYMT 287 (476)
Q Consensus 230 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~ 287 (476)
.+...|...|++++|...+.+..+.. - +....++..+...+...|+ ++.|...+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 55555666666666666665554321 0 0112233344444444444 444444433332
Q ss_pred HhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----
Q 038936 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-PD---- 360 (476)
Q Consensus 288 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~---- 360 (476)
+. ...... .....+..+...|...|++++|+..+++..+.... ++
T Consensus 211 ~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (411)
T 4a1s_A 211 KL----------------------------MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAE 262 (411)
T ss_dssp HH----------------------------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HH----------------------------HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHH
Confidence 21 000000 11235666777788888888888888777653110 11
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC----ChhhHHHHHHHHHhcCChhhHHHHHhhC-C------CCC-c
Q 038936 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY----TADHYACIVDLLARSGRFHEAEDVISKM-P------MKP-D 428 (476)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~p-~ 428 (476)
..++..+...+...|++++|.+.++++.....-.. ...++..++.+|...|++++|.+.++++ . ..+ .
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 342 (411)
T 4a1s_A 263 RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE 342 (411)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHH
Confidence 12667778888888888888888888775421111 1456777888888889998888888875 1 111 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038936 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 429 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 461 (476)
..++..++..+...|++++|...+++++++.+.
T Consensus 343 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 343 ARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 346777888888899999999999999887653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=9.4e-14 Score=124.12 Aligned_cols=241 Identities=9% Similarity=0.034 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038936 194 EVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGR-REEGFALFSELIKSGIRPNAFTFAGVLNA 269 (476)
Q Consensus 194 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (476)
...+..+...+...|++++|+..++++++. +...|+.+..++...|+ +++|+..|+++++.. +-+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 456677777788888888888888887542 34567777888888886 888888888888765 4456677777777
Q ss_pred HhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHh-cCChHHH
Q 038936 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQ-NGMPDKA 345 (476)
Q Consensus 270 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~-~~~~~~A 345 (476)
+...|++++|+..++.+++.. +.+...|..+..++...|++++|+..|+++.+ .+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 888888888888888888875 56677788888888888888888888888774 356688888888888 5555777
Q ss_pred -----HHHHHHHHHcCCCCcHHHHHHHHHHHhccC--chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-------
Q 038936 346 -----LEYFELLLKSGTQPDHIVFVGVLTACTHAG--LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG------- 411 (476)
Q Consensus 346 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 411 (476)
+..+++.++.. +-+...|..+...+...| ++++|++.++++ + ..+.+...+..++.+|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccch
Confidence 58888888854 234567888888888877 688999988887 3 34566778888999998874
Q ss_pred --ChhhHHHHHhhC--CCCCc-HHHHHHHHHHHH
Q 038936 412 --RFHEAEDVISKM--PMKPD-KFLWASLLGGCR 440 (476)
Q Consensus 412 --~~~~A~~~~~~~--~~~p~-~~~~~~l~~~~~ 440 (476)
.+++|+++++++ ...|. ...|..++..+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 258999999987 56664 446666665554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=8.2e-14 Score=118.34 Aligned_cols=194 Identities=13% Similarity=0.025 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038936 194 EVVWSALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270 (476)
Q Consensus 194 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (476)
...+..++..+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 57788899999999999999999999854 356678889999999999999999999998875 44667777788888
Q ss_pred hccccHHHHHHHHHHHHHhCCCC-chhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHH
Q 038936 271 ADHAAEELGKQVHGYMTRIGYDP-YSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKAL 346 (476)
Q Consensus 271 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 346 (476)
...|++++|..+++.+.+.+..| +...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 88889999988888887622222 334444444555555555555555544332 22334444444444455555555
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
..++++.+.. +.+...+..+...+...|++++|.++++++.+
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5554444432 12333344444444444445555444444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-13 Score=115.80 Aligned_cols=220 Identities=9% Similarity=-0.004 Sum_probs=152.6
Q ss_pred CchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHc----CCCHHHHHHHHHhhccc-chhhHHHHH
Q 038936 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK----CGSINEARQIFDKMVDR-DVVSWTAMI 232 (476)
Q Consensus 158 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~ 232 (476)
+...+..+...+...|++++|.+.++...+.+ +...+..+...|.. .+++++|+..|++..+. ++..+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45667778888899999999999999999843 45677888999999 99999999999998654 567788899
Q ss_pred HHHHh----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc----cccHHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 038936 233 GRYFQ----EGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD----HAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304 (476)
Q Consensus 233 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (476)
..|.. .+++++|...|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 99999 999999999999998865 56677777777777 888899998888888765 33444455555
Q ss_pred hhh----cCChhhHHHHHccCCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc--
Q 038936 305 YSK----CGNVENSKKVFNGMPR-PDLVSWTSLIAGYAQ----NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH-- 373 (476)
Q Consensus 305 ~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 373 (476)
|.. .+++++|...|++..+ .++..+..+...|.. .+++++|+..|++..+.+ | ...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCC
Confidence 554 5555555555554432 233444445555555 555555555555555432 1 3334444444444
Q ss_pred --cCchhhHHHHHHHHHH
Q 038936 374 --AGLVDKGLQYFHSIKE 389 (476)
Q Consensus 374 --~~~~~~a~~~~~~~~~ 389 (476)
.+++++|.+.|+++.+
T Consensus 233 ~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp SSSCCSTTHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHH
Confidence 4555555555555543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=132.40 Aligned_cols=262 Identities=15% Similarity=0.085 Sum_probs=142.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhccCCCCC--chHHHHHHHHHHhhhhhhhHHHHHHHHHHc----CCC-chHHHHHH
Q 038936 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSN--KFTLSSVLSAVSAIQCLRLGKEIHGYIMRT----GFD-SDEVVWSA 199 (476)
Q Consensus 127 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 199 (476)
......+...|++++|+..|+++....+..|. ...+..+...+...|+++.|...++..... +.+ ....++..
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 33445555555555555555555542111111 134445555555555666665555554322 212 22456777
Q ss_pred HHHHHHcCCCHHHHHHHHHhhccc-----c----hhhHHHHHHHHHhcCC--------------------hhHHHHHHHH
Q 038936 200 LSDMYGKCGSINEARQIFDKMVDR-----D----VVSWTAMIGRYFQEGR--------------------REEGFALFSE 250 (476)
Q Consensus 200 l~~~~~~~~~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~ 250 (476)
+...+...|++++|...+++..+. + ..++..+...|...|+ +++|...+.+
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 888888888888888888877431 1 2367777888888888 8888888777
Q ss_pred HHHc----CCCC-CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCC-C----chhhHHHHHHHhhhcCChhhHHHHHcc
Q 038936 251 LIKS----GIRP-NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD-P----YSFAASALVHMYSKCGNVENSKKVFNG 320 (476)
Q Consensus 251 ~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 320 (476)
..+. +..| ...++..+...+...|+++.|...+++..+.... + ....+..+...|...|++++|...+++
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6542 1111 1234556666677777777777777776554110 1 112444555555555666555555554
Q ss_pred CCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHhccCchhhHHHHHHH
Q 038936 321 MPR-----PD----LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-PD----HIVFVGVLTACTHAGLVDKGLQYFHS 386 (476)
Q Consensus 321 ~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 386 (476)
..+ ++ ..++..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 432 11 234445555555555555555555555432100 00 22444455555555555555555555
Q ss_pred HH
Q 038936 387 IK 388 (476)
Q Consensus 387 ~~ 388 (476)
+.
T Consensus 333 al 334 (406)
T 3sf4_A 333 HL 334 (406)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=128.96 Aligned_cols=273 Identities=13% Similarity=0.029 Sum_probs=173.7
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHcCCCch---HHHHHHHHHHHHcCCCHHHHHHHHHhhccc---------chhhHH
Q 038936 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD---EVVWSALSDMYGKCGSINEARQIFDKMVDR---------DVVSWT 229 (476)
Q Consensus 162 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~ 229 (476)
+......+...|+++.|...++.+++...... ...+..+...+...|++++|...+++..+. ....+.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 34445566677778888888877776642211 355667777777778888777777765321 133566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHhcccc--------------------HHHHHHHHH
Q 038936 230 AMIGRYFQEGRREEGFALFSELIKSGI-RPN----AFTFAGVLNACADHAA--------------------EELGKQVHG 284 (476)
Q Consensus 230 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~ 284 (476)
.+...+...|++++|...+.+..+... .++ ..++..+...+...|+ ++.|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 666777777777777777776654310 011 1244444455555555 455554444
Q ss_pred HHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC
Q 038936 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT---QP 359 (476)
Q Consensus 285 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~ 359 (476)
..... ...... .....+..+...+...|++++|...+++..+... .+
T Consensus 168 ~a~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 219 (338)
T 3ro2_A 168 ENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 219 (338)
T ss_dssp HHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHH----------------------------HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh
Confidence 43321 000000 1123566677778888888888888888765310 01
Q ss_pred --cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChhhHHHHHhhC-C------CC
Q 038936 360 --DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT----ADHYACIVDLLARSGRFHEAEDVISKM-P------MK 426 (476)
Q Consensus 360 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~ 426 (476)
...++..+...+...|++++|.+.++++.+...-.++ ..++..++.++...|++++|...++++ . ..
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 1236777888888999999999999888754221222 456778889999999999999998875 1 11
Q ss_pred C-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 427 P-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 427 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
+ ...++..++..+...|++++|...+++++++.++.
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 1 23477888899999999999999999999987753
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.8e-13 Score=120.68 Aligned_cols=232 Identities=9% Similarity=-0.007 Sum_probs=154.9
Q ss_pred HHHHHHcCCCHHHHHHHHHhhcc-----c----chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038936 200 LSDMYGKCGSINEARQIFDKMVD-----R----DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270 (476)
Q Consensus 200 l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (476)
....+...|++++|+..+++..+ + ...++..+...|...|++++|...+.+..+.-...+..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------- 179 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------- 179 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT---------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc---------
Confidence 55666677777777777777643 1 12356666777777777777777776665421000000
Q ss_pred hccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC-----CC----hhhHHHHHHHHHhcCC
Q 038936 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-----PD----LVSWTSLIAGYAQNGM 341 (476)
Q Consensus 271 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~ 341 (476)
.+....++..+...|...|++++|...+++..+ ++ ..++..+...|...|+
T Consensus 180 --------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 180 --------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred --------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence 000112333444444444444444444444331 11 2367778888899999
Q ss_pred hHHHHHHHHHHHHc----CC-CCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCC-
Q 038936 342 PDKALEYFELLLKS----GT-QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG---LTYTADHYACIVDLLARSGR- 412 (476)
Q Consensus 342 ~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~- 412 (476)
+++|+..+++..+. +. +....++..+...+...|++++|.+.++++.+... .+.....+..++..+...|+
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 99999999888762 22 33456788899999999999999999998876421 12222335678888999999
Q ss_pred --hhhHHHHHhhCCCCCcH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 413 --FHEAEDVISKMPMKPDK-FLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 413 --~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
+++|+.++++....|+. ..+..++..|...|++++|...+++++++..
T Consensus 320 ~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 320 EAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 89999999998665543 4677889999999999999999999998544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-14 Score=116.23 Aligned_cols=167 Identities=14% Similarity=0.103 Sum_probs=138.4
Q ss_pred chhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 038936 294 YSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370 (476)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (476)
++.+|..+...|...|++++|+..|++..+ .++..+..+..+|.+.|++++|+..+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 455667777777777777777777777653 355678888889999999999999999998864 3355677777888
Q ss_pred HhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHH
Q 038936 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 448 (476)
+...++++.|.+.+.++... .+.+...+..++.+|.+.|++++|++.|+++ ...| +...|..++.++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 89999999999999999875 3556778899999999999999999999986 4444 677899999999999999999
Q ss_pred HHHHHHHHHcCCCCc
Q 038936 449 KRAAEALFEIEPENP 463 (476)
Q Consensus 449 ~~~~~~~~~~~p~~~ 463 (476)
+..|+++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999774
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-14 Score=133.05 Aligned_cols=194 Identities=9% Similarity=-0.001 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCCh-hhHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038936 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV-ENSKKVFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFEL 351 (476)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 351 (476)
.+.+...++...... +.+...+..+...+...|++ ++|+..|++..+ | +...|..+...|...|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444555555444332 34556666677777777777 777777776653 3 456777888888888888888888888
Q ss_pred HHHcCCCCcHHHHHHHHHHHhcc---------CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------CChh
Q 038936 352 LLKSGTQPDHIVFVGVLTACTHA---------GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS--------GRFH 414 (476)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 414 (476)
..+. .|+...+..+...+... |++++|++.++++.+. .+.+...|..++.+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 8874 46667777788888888 8888888888888864 244567788888888887 8888
Q ss_pred hHHHHHhhC-CCCC----cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 415 EAEDVISKM-PMKP----DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 415 ~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
+|++.|+++ ...| +...|..++.++...|++++|+..|+++++++|+++.++..++.++.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~ 303 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLE 303 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888888885 3344 56678888888888888888888888888888888888888877764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-13 Score=113.80 Aligned_cols=198 Identities=11% Similarity=0.029 Sum_probs=129.5
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038936 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267 (476)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 267 (476)
+.+...+..++..+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 45677889999999999999999999998854 346678889999999999999999999998875 45667788888
Q ss_pred HHHhcc-ccHHHHHHHHHHHHHhCCCC-chhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHH
Q 038936 268 NACADH-AAEELGKQVHGYMTRIGYDP-YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345 (476)
Q Consensus 268 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 345 (476)
..+... |+++.|...++.+.+.+..| +...+..+...+. ..|++++|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------------------~~~~~~~A 132 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA-------------------------------KQGQFGLA 132 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHH-------------------------------HTTCHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHH-------------------------------HcCCHHHH
Confidence 888889 99999999998887722122 2334444444444 44555555
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT-YTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
+..++++.+.. +.+...+..++..+...|++++|.+.++++.+.. + .+...+..++..+...|+.++|..+++.+
T Consensus 133 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 133 EAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV--EVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 55555544432 1223444445555555555555555555554431 2 23334444444455555555555555443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-14 Score=120.17 Aligned_cols=195 Identities=13% Similarity=0.104 Sum_probs=109.2
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 038936 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268 (476)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 268 (476)
.....+..+...+...|++++|...|+++.+. +...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 45667888899999999999999999998653 45678888999999999999999999998875 456777888888
Q ss_pred HHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHH
Q 038936 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKA 345 (476)
Q Consensus 269 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 345 (476)
.+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 8889999999999999888765 34444444555555555555555555444331 2333444444444444444444
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
+..++++.+.. +.+..++..+..++...|++++|.+.++++.+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 44444444432 12233444444444444444444444444443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.4e-14 Score=127.96 Aligned_cols=273 Identities=10% Similarity=0.001 Sum_probs=179.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCC--chHHHHHHHHHHhhhhhhhHHHHHHHHHHc----C-CCchHHHH
Q 038936 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN--KFTLSSVLSAVSAIQCLRLGKEIHGYIMRT----G-FDSDEVVW 197 (476)
Q Consensus 125 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 197 (476)
.+..+...+...|++++|+..|+++....+..+. ...+..+...+...|+++.|...+++.++. + .+....++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 4556678889999999999999999874222221 146778888999999999999999988754 2 13345678
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhhccc---------chhhHHHHHHHHHhcCC-----------------hhHHHHHHHHH
Q 038936 198 SALSDMYGKCGSINEARQIFDKMVDR---------DVVSWTAMIGRYFQEGR-----------------REEGFALFSEL 251 (476)
Q Consensus 198 ~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~ 251 (476)
..+...|...|++++|...+++..+. ...++..+...|...|+ +++|...+.+.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 88999999999999999999987442 23467888899999999 88888887776
Q ss_pred HHc----CCCC-CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCCh
Q 038936 252 IKS----GIRP-NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326 (476)
Q Consensus 252 ~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 326 (476)
.+. +..+ ....+..+...+...|++++|...+++..+.... ... .. ...
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~--------------~~-----------~~~ 263 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE-FGD--------------RA-----------AER 263 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTC--------------HH-----------HHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-cCC--------------cH-----------HHH
Confidence 542 1111 1123444445555556666666655554433100 000 00 001
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC----Ch
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-----PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY----TA 397 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~ 397 (476)
..+..+...|...|++++|+..+++..+.... ....++..+...+...|++++|.+.++++.....-.+ ..
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 343 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH
Confidence 25556666677777777777777766543110 1134566677777777888888877777665321111 13
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 398 DHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
.++..++.+|.+.|++++|.+.++++
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 35667777888888888888877764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-13 Score=122.94 Aligned_cols=273 Identities=14% Similarity=0.075 Sum_probs=180.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCC--chHHHHHHHHHHhhhhhhhHHHHHHHHHHc----CCC-chHHHH
Q 038936 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN--KFTLSSVLSAVSAIQCLRLGKEIHGYIMRT----GFD-SDEVVW 197 (476)
Q Consensus 125 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 197 (476)
.+......+...|++++|+..|+++....+..|. ...+..+...+...|+++.|.+.++...+. +.+ ....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3445567888999999999999999874222221 356778888999999999999999987643 222 235678
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhhccc-----c----hhhHHHHHHHHHhcCC--------------------hhHHHHHH
Q 038936 198 SALSDMYGKCGSINEARQIFDKMVDR-----D----VVSWTAMIGRYFQEGR--------------------REEGFALF 248 (476)
Q Consensus 198 ~~l~~~~~~~~~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 248 (476)
..+...+...|++++|...+++..+. + ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 88999999999999999999987441 2 2367788889999999 88888888
Q ss_pred HHHHHc----CCCC-CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC
Q 038936 249 SELIKS----GIRP-NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323 (476)
Q Consensus 249 ~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (476)
.+..+. +..+ ....+..+...+...|+++.|...++...+..... ++. .
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~-----------~ 220 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---------------GDK-----------A 220 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---------------TCH-----------H
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc---------------CCh-----------H
Confidence 776532 1011 11234444445555566666665555544321000 000 0
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC--
Q 038936 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-PD----HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT-- 396 (476)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 396 (476)
....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...++++........+
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 300 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 300 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH
Confidence 01225566677777777888887777776543100 11 345667777788888888888888877653211111
Q ss_pred --hhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 397 --ADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 397 --~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
..++..++.+|.+.|++++|.+.++++
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 301 GEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 345677888888888888888888774
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-13 Score=114.89 Aligned_cols=206 Identities=11% Similarity=0.049 Sum_probs=148.8
Q ss_pred CCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHH
Q 038936 258 PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIA 334 (476)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~ 334 (476)
.|+..+......+...|++++|...++...+...+++...+..+..++...|++++|+..|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 455677777778888899999999999888876436667777788888888888888888887764 3 3456777888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC---hhhHHHHH
Q 038936 335 GYAQNGMPDKALEYFELLLKSGTQPDH-------IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT---ADHYACIV 404 (476)
Q Consensus 335 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 404 (476)
.|...|++++|+..+++..+... .+. ..|..+...+...|++++|++.|+++.+. .|+ ...+..++
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHHH
Confidence 88888888888888888887542 233 34666777778888888888888888743 443 56677777
Q ss_pred HHHHhcCCh--hhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 405 DLLARSGRF--HEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 405 ~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
.+|...|+. ++|..+ . ..+...+.... ....+.+++|+..++++++++|+++.+...|+.+..
T Consensus 161 ~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 777666543 222211 1 11233333332 334567899999999999999999999999988764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.56 E-value=8e-13 Score=115.69 Aligned_cols=163 Identities=12% Similarity=0.071 Sum_probs=77.3
Q ss_pred hHHHHHHHhhhcCChhhHHHHHccCCC--CC-hh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-
Q 038936 297 AASALVHMYSKCGNVENSKKVFNGMPR--PD-LV-SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC- 371 (476)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~- 371 (476)
.+..++..+...|++++|..+|+++.+ |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|...+...
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY 179 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344444444444444444444444332 21 22 45555555555555555555555555532 12222232222211
Q ss_pred hccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-C---CCC--cHHHHHHHHHHHHhcCCh
Q 038936 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-P---MKP--DKFLWASLLGGCRIHGNL 445 (476)
Q Consensus 372 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~ 445 (476)
...|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|+++ . ..| ....|..++..+...|+.
T Consensus 180 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 12455555555555555432 234445555555555555555555555554 1 133 233555555555555555
Q ss_pred HHHHHHHHHHHHcCCCC
Q 038936 446 DLAKRAAEALFEIEPEN 462 (476)
Q Consensus 446 ~~A~~~~~~~~~~~p~~ 462 (476)
++|..+++++++..|++
T Consensus 258 ~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 258 ASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHcccc
Confidence 55555555555555543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-13 Score=118.44 Aligned_cols=249 Identities=9% Similarity=0.064 Sum_probs=162.8
Q ss_pred HHHHHHHHhhcc---cchhhHHHHHHHHH-------hcCCh-------hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc
Q 038936 211 NEARQIFDKMVD---RDVVSWTAMIGRYF-------QEGRR-------EEGFALFSELIKSGIRPNAFTFAGVLNACADH 273 (476)
Q Consensus 211 ~~a~~~~~~~~~---~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (476)
++|...|++... .++..|..++..+. ..|++ ++|..+|++.++.-.+.+...|..+...+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 566666666644 23445666555554 34665 77777777777631123445666677777777
Q ss_pred ccHHHHHHHHHHHHHhCCCCchh-hHHHHHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHHHH-HhcCChHHHHHH
Q 038936 274 AAEELGKQVHGYMTRIGYDPYSF-AASALVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIAGY-AQNGMPDKALEY 348 (476)
Q Consensus 274 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~-~~~~~~~~A~~~ 348 (476)
|+++.|..+|+++.+.. +.+.. ++..++..+.+.|++++|..+|++..+ | +...|...+... ...|++++|..+
T Consensus 113 ~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777777643 22233 677777777777888888888777664 2 223333332222 236999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChhhHHHHHhhC-CC
Q 038936 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY--TADHYACIVDLLARSGRFHEAEDVISKM-PM 425 (476)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 425 (476)
|++.++.. +.+...+..++..+.+.|++++|..+|+++.....++| ....|..++..+.+.|+.++|..+++++ ..
T Consensus 192 ~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 192 FELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99998863 33567788888888899999999999999987423454 3567888888999999999999998886 22
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 426 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
.|+......+. .+ ....+.+++.|+++..++.||.+
T Consensus 271 ~p~~~~~~~~~-~~----------~~r~~~l~~~P~~~~~ln~lgY~ 306 (308)
T 2ond_A 271 FREEYEGKETA-LL----------VDRYKFMDLYPCSASELKALGYK 306 (308)
T ss_dssp TTTTTSSCHHH-HH----------HTTTCBTTBCSSCHHHHHTTTCC
T ss_pred cccccccchHH-HH----------HHHHHhcccCCCCHHHHHhcCCC
Confidence 33211000000 01 11115567999999999988753
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-14 Score=125.01 Aligned_cols=247 Identities=11% Similarity=0.066 Sum_probs=154.4
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc--------cc---hhhHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 038936 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVD--------RD---VVSWTAMIGRYFQEGRREEGFALFSELIKS----- 254 (476)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 254 (476)
+....++..+...+...|++++|..+++++.+ .+ ...+..+...|...|++++|...+++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 44567788888999999999999999888754 12 245677778888888888888888887653
Q ss_pred -CCCC-CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHH
Q 038936 255 -GIRP-NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSL 332 (476)
Q Consensus 255 -~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 332 (476)
+-.| ....+..+...+...|+++.|...++.+.+..... +..-.......+..+
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------------------------~~~~~~~~~~~~~~l 159 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV------------------------LGKDHPDVAKQLNNL 159 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH------------------------HCTTCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh------------------------cCCCChHHHHHHHHH
Confidence 1112 23455556666666777777777666655431000 000000122356667
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc------CCCCc-HHHHHHHHHHHhccCchhhHHHHHHHHHHhc------CCCCC-h-
Q 038936 333 IAGYAQNGMPDKALEYFELLLKS------GTQPD-HIVFVGVLTACTHAGLVDKGLQYFHSIKEKH------GLTYT-A- 397 (476)
Q Consensus 333 ~~~~~~~~~~~~A~~~~~~~~~~------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~-~- 397 (476)
...+...|++++|+..++++.+. +..|. ..++..+...+...|++++|.+.++++.+.. ...+. .
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 239 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 239 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 77778888888888888887664 21232 3467778888888999999999888887531 01111 1
Q ss_pred -----hhHHHHHHHHHhcCChhhHHHHHhhCC-CCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038936 398 -----DHYACIVDLLARSGRFHEAEDVISKMP-MKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 398 -----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 461 (476)
..+..+...+...+.+.+|...++... ..| +..++..++.+|...|++++|...+++++++.|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 122233344556666777777777763 344 4558889999999999999999999999998875
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-12 Score=116.14 Aligned_cols=224 Identities=9% Similarity=0.006 Sum_probs=126.2
Q ss_pred HHhcCChhHHHHHHHHHHHc--CCCCCh--hhHHHHHHH--HHhcCChHHHH-----------HHHHHccc-c-cch---
Q 038936 36 CRQNRALEEGKKVHSHLKSS--GFKPGV--FISNCLLDM--YAKCGNISDAQ-----------TLFDEMQE-R-DVC--- 93 (476)
Q Consensus 36 ~~~~~~~~~a~~~~~~~~~~--~~~~~~--~~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~-~-~~~--- 93 (476)
+.+.+++++|..+++++.+. ..+.+. ..|-.++.. ....++++.+. +.++.+.. + +..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 46788899999988887654 222232 233333222 11223333333 44444432 1 111
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHhcCCCC---------CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchH
Q 038936 94 ---SYNTMISGFTKGGSLEQARNLFDEMPQR---------DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161 (476)
Q Consensus 94 ---~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 161 (476)
.+......+...|++++|...|++..+. ...++..+...+...|++++|+..+++........++.
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-- 179 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY-- 179 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT--
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc--
Confidence 1222444556667777776666665431 12345566666666666666666666655411100000
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc-----c----hhhHHHHH
Q 038936 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-----D----VVSWTAMI 232 (476)
Q Consensus 162 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~----~~~~~~l~ 232 (476)
.+....++..+...|...|++++|+..+++..+- + ..++..+.
T Consensus 180 ----------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 231 (383)
T 3ulq_A 180 ----------------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIG 231 (383)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 0112346677778888888888888888776431 1 13566777
Q ss_pred HHHHhcCChhHHHHHHHHHHHc----CC-CCCHhhHHHHHHHHhccccHHHHHHHHHHHHHh
Q 038936 233 GRYFQEGRREEGFALFSELIKS----GI-RPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289 (476)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 289 (476)
..|...|++++|...+++..+. +. +....++..+...+...|+++.|...+++..+.
T Consensus 232 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 232 LCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7888888888888888777652 22 223445666666677777777777777766543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-12 Score=105.02 Aligned_cols=169 Identities=14% Similarity=0.053 Sum_probs=144.8
Q ss_pred hhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 038936 295 SFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371 (476)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 371 (476)
...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34556677888899999999999999875 356778889999999999999999999999864 34677888889999
Q ss_pred hccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CC-CCcHHHHHHHHHHHHhcCChHHHH
Q 038936 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PM-KPDKFLWASLLGGCRIHGNLDLAK 449 (476)
Q Consensus 372 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~ 449 (476)
...|++++|.+.++++... .+.+...+..++.++...|++++|.+.++++ .. +.+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999975 3557788899999999999999999999986 32 336778899999999999999999
Q ss_pred HHHHHHHHcCCCCchhH
Q 038936 450 RAAEALFEIEPENPATY 466 (476)
Q Consensus 450 ~~~~~~~~~~p~~~~~~ 466 (476)
..++++++..|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 165 PHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHcCCCchhhH
Confidence 99999999999887543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-11 Score=111.60 Aligned_cols=225 Identities=12% Similarity=0.042 Sum_probs=145.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHhccccHHHHHHHHHHHHHhCC-----C-CchhhHHHHH
Q 038936 234 RYFQEGRREEGFALFSELIKSGI-RPN----AFTFAGVLNACADHAAEELGKQVHGYMTRIGY-----D-PYSFAASALV 302 (476)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~~l~ 302 (476)
.+...|++++|...|.+..+... .++ ..++..+...+...|+++.|...+.+..+... . ....+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34444555555555554443210 011 12333444444555555555555554443210 0 1133445556
Q ss_pred HHhhhcCChhhHHHHHccCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCcHHHHHHHH
Q 038936 303 HMYSKCGNVENSKKVFNGMPR-----PD----LVSWTSLIAGYAQNGMPDKALEYFELLLK-----SGTQPDHIVFVGVL 368 (476)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~ 368 (476)
.+|...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+ .. +....++..+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHH
Confidence 666666666666666655442 11 24677788889999999999999998876 33 23356788889
Q ss_pred HHHhccCchhhHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCC---hhhHHHHHhhCCCCCcHH-HHHHHHHHHHh
Q 038936 369 TACTHAGLVDKGLQYFHSIKEKHGLTYT---ADHYACIVDLLARSGR---FHEAEDVISKMPMKPDKF-LWASLLGGCRI 441 (476)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~~-~~~~l~~~~~~ 441 (476)
..+.+.|++++|...+++..+...-..+ ...+..+...+...|+ +.+|+..+++....|+.. .+..++..|..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 9999999999999999999875332222 3345666677778888 899999999976555443 66788888999
Q ss_pred cCChHHHHHHHHHHHHcC
Q 038936 442 HGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 442 ~g~~~~A~~~~~~~~~~~ 459 (476)
.|++++|...++++++..
T Consensus 349 ~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999998753
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-12 Score=105.10 Aligned_cols=148 Identities=15% Similarity=0.113 Sum_probs=131.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHH
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 404 (476)
++..|..+...|.+.|++++|++.|++.++.. +-+...+..+..++...|++++|...++++... .+.+...+..++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 56789999999999999999999999999965 346678889999999999999999999999875 355677788899
Q ss_pred HHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 405 DLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
..+...++++.|.+.+.++ ...| +...+..++..+...|++++|++.|+++++++|+++.++..+|.+|..
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 9999999999999999986 3334 677889999999999999999999999999999999999999999864
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-10 Score=107.55 Aligned_cols=405 Identities=9% Similarity=0.019 Sum_probs=271.9
Q ss_pred HHHHHHHhc---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---hHHHHHHHHH
Q 038936 13 EALQILHQI---SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN---ISDAQTLFDE 86 (476)
Q Consensus 13 ~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 86 (476)
+-+..|+.. .+.|...|..++..+.+.+.++.+..+|+.+... .+.....|...+..-.+.|+ ++.+..+|+.
T Consensus 50 d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp CHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 334444444 2779999999999999999999999999999987 45677888888888888888 9999999999
Q ss_pred ccc-----ccchHHHHHHHHHHhcCCH--------HHHHHHHhcCC------CC-CcchHHHHHHHHHh---------cC
Q 038936 87 MQE-----RDVCSYNTMISGFTKGGSL--------EQARNLFDEMP------QR-DNFSWTAMISGYVR---------YN 137 (476)
Q Consensus 87 ~~~-----~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~------~~-~~~~~~~l~~~~~~---------~~ 137 (476)
... |++..|...+....+.++. +...++|+... .+ +...|...+..... .+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 874 5667788777766665543 33446666532 22 34567777765542 34
Q ss_pred ChhHHHHHHHHHHhccCCCCCchHHH---HHHHHH----------HhhhhhhhHHHHHHHHHHc--CC----C-------
Q 038936 138 QPIEALDLYRMMQNFENSVSNKFTLS---SVLSAV----------SAIQCLRLGKEIHGYIMRT--GF----D------- 191 (476)
Q Consensus 138 ~~~~a~~~~~~~~~~~~~~~~~~~~~---~ll~~~----------~~~~~~~~a~~~~~~~~~~--~~----~------- 191 (476)
+.+.+..+|+.+.. -+...-..+|. ...... -...+++.|...+.++... ++ +
T Consensus 209 ~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 209 RVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred HHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 56778889988875 22221222332 111110 0112344444444443211 11 1
Q ss_pred ----c--------hHHHHHHHHHHHHcCC-------CHHHHHHHHHhhcc---cchhhHHHHHHHHHhcCChhHHH-HHH
Q 038936 192 ----S--------DEVVWSALSDMYGKCG-------SINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGF-ALF 248 (476)
Q Consensus 192 ----~--------~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~-~~~ 248 (476)
| ....|...+..--..+ ..+.+..+|++.+. ..+..|...+.-+...|+.++|. .+|
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1 1234555554433322 12345567777754 35567888888888889999997 999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhC----------CCC-----------chhhHHHHHHHhhh
Q 038936 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG----------YDP-----------YSFAASALVHMYSK 307 (476)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~-----------~~~~~~~l~~~~~~ 307 (476)
++.... ++.+...+...+......|+++.|..+++.+.... .+. ...+|...+....+
T Consensus 368 ~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 368 KLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp HHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence 999875 34555556667777788899999999999988642 121 23467777787888
Q ss_pred cCChhhHHHHHccCCCC----ChhhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHH
Q 038936 308 CGNVENSKKVFNGMPRP----DLVSWTSLIAGYAQN-GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 382 (476)
.|+.+.|..+|..+.+. ....|...+..-.+. ++++.|..+|+..++. .+-+...+...+......|+.+.|..
T Consensus 447 ~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~ 525 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKS 525 (679)
T ss_dssp HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 89999999999988643 233444333333344 4589999999999986 33455556677777778899999999
Q ss_pred HHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 383 YFHSIKEKHGLTY---TADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 383 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
+|+++... .++ ....|..++..-.+.|+.+.+.++.+++
T Consensus 526 lferal~~--~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 526 LFESSIDK--ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp HHHHHTTT--SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHh--cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999864 221 3467888888888999999999999887
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.2e-13 Score=122.69 Aligned_cols=209 Identities=11% Similarity=0.002 Sum_probs=103.1
Q ss_pred HHHHHHHHHhhcc---cchhhHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHH
Q 038936 210 INEARQIFDKMVD---RDVVSWTAMIGRYFQEGRR-EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285 (476)
Q Consensus 210 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 285 (476)
+++++..++.... .+...+..+...+...|++ ++|...|++..+.. +.+...+..+...+...|++++|...++.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444555544422 2334555556666666666 66666666665543 23345555555556666666666666666
Q ss_pred HHHhCCCCchhhHHHHHHHhhhc---------CChhhHHHHHccCCC---CChhhHHHHHHHHHhc--------CChHHH
Q 038936 286 MTRIGYDPYSFAASALVHMYSKC---------GNVENSKKVFNGMPR---PDLVSWTSLIAGYAQN--------GMPDKA 345 (476)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~--------~~~~~A 345 (476)
..+.. |+...+..+..+|... |++++|+..|++..+ .+...|..+..+|... |++++|
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 55543 3344555555555555 555555555544432 2234444444444444 445555
Q ss_pred HHHHHHHHHcCCC--CcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 346 LEYFELLLKSGTQ--PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 346 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
+..|++..+.... .+...+..+..++...|++++|.+.|+++.+. .+.+...+..+..++...|++++|++.+.++
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5555555443210 13344444445555555555555555554432 1223334444444455555555554444443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.8e-11 Score=107.78 Aligned_cols=95 Identities=9% Similarity=0.043 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcc-----cc----hhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCHh
Q 038936 195 VVWSALSDMYGKCGSINEARQIFDKMVD-----RD----VVSWTAMIGRYFQEGRREEGFALFSELIKS----GIRPNAF 261 (476)
Q Consensus 195 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ 261 (476)
.+++.+...|...|++++|+..|++..+ .+ ..++..+..+|...|++++|...+.+..+. +.+....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 4455566666666666666666655532 11 124555556666666666666666655541 1112233
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHHHh
Q 038936 262 TFAGVLNACADHAAEELGKQVHGYMTRI 289 (476)
Q Consensus 262 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 289 (476)
++..+...+...|+++.|...+++..+.
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4444445555555555555555555443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.7e-13 Score=115.45 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=20.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038936 124 FSWTAMISGYVRYNQPIEALDLYRMMQN 151 (476)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 151 (476)
.++..+...+...|++++|+.+++++..
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 55 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALE 55 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566777777788888888888877764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.3e-12 Score=105.25 Aligned_cols=148 Identities=11% Similarity=0.066 Sum_probs=87.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHH
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 404 (476)
++..+......+...|++++|+..|++.++....++...+..+..++...|++++|++.++++.+. .+.+...+..++
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 344555556666666666666666666666543245555555666666666666666666666642 233445566666
Q ss_pred HHHHhcCChhhHHHHHhhC-CCCC-cH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CchhHHHHHHhh
Q 038936 405 DLLARSGRFHEAEDVISKM-PMKP-DK-------FLWASLLGGCRIHGNLDLAKRAAEALFEIEPE--NPATYVTMANIY 473 (476)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~y 473 (476)
.+|...|++++|++.++++ ...| +. ..|..++..+...|++++|+..++++++++|+ ++.++..++.+|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 6666666666666666654 2222 22 34555566666666666666666666666666 666666666665
Q ss_pred h
Q 038936 474 A 474 (476)
Q Consensus 474 ~ 474 (476)
.
T Consensus 164 ~ 164 (228)
T 4i17_A 164 Y 164 (228)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-12 Score=123.22 Aligned_cols=168 Identities=15% Similarity=0.131 Sum_probs=142.8
Q ss_pred CCchhhHHHHHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 038936 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368 (476)
Q Consensus 292 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 368 (476)
|.+...++.+..+|.+.|++++|+..|++..+ | +...|..+..+|.+.|++++|+..|++.++.. +-+...|..+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 44577889999999999999999999998874 3 46788999999999999999999999999864 23467888899
Q ss_pred HHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChH
Q 038936 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLD 446 (476)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 446 (476)
.++...|++++|++.|+++.+. .+.+...+..++.+|.+.|++++|++.|+++ ...| +...+..++.++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999875 2446778999999999999999999999986 4555 5678889999999999999
Q ss_pred HHHHHHHHHHHcCCCC
Q 038936 447 LAKRAAEALFEIEPEN 462 (476)
Q Consensus 447 ~A~~~~~~~~~~~p~~ 462 (476)
+|.+.+++++++.|+.
T Consensus 163 ~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 163 DYDERMKKLVSIVADQ 178 (723)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhH
Confidence 9999999999987753
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-12 Score=125.30 Aligned_cols=161 Identities=10% Similarity=0.116 Sum_probs=128.3
Q ss_pred CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHHH
Q 038936 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIAG 335 (476)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~ 335 (476)
+...++.+...+...|++++|+..|++..+.. +.+...+..+..+|.+.|++++|+..|++..+ | +...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45677888888888888888888888888875 55677788888888888888888888887764 3 45678888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhh
Q 038936 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415 (476)
Q Consensus 336 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 415 (476)
|...|++++|++.|++.++.. +-+...+..+..++...|++++|++.|+++.+. .+.+...+..++.+|...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHH
Confidence 888888888888888888854 234567888888888888888888888888864 24456778888888888888888
Q ss_pred HHHHHhhC
Q 038936 416 AEDVISKM 423 (476)
Q Consensus 416 A~~~~~~~ 423 (476)
|.+.++++
T Consensus 164 A~~~~~ka 171 (723)
T 4gyw_A 164 YDERMKKL 171 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888775
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.40 E-value=5.8e-11 Score=100.59 Aligned_cols=246 Identities=9% Similarity=0.008 Sum_probs=173.0
Q ss_pred HHHHHcCCCHHHHHHHHHhhcccchh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHH
Q 038936 201 SDMYGKCGSINEARQIFDKMVDRDVV-SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279 (476)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 279 (476)
++-..-.|++..++.-...+...+.. .-.-+.++|+..|++... ..-.|....+..+...+. .+ +
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~~-~~----a 85 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFLD-TK----N 85 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHHT-TT----C
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHhc-cc----H
Confidence 34455679998888866655433322 223345788888887742 122344444444444442 22 6
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP-----DLVSWTSLIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
...+++....+ +++...+..+..++...|++++|++++.+...+ +...+..++..+.+.|+++.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777665 455555667889999999999999999987542 445777888999999999999999999988
Q ss_pred cCCCC-----cHHHHHHHHHHH--hccC--chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-C
Q 038936 355 SGTQP-----DHIVFVGVLTAC--THAG--LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-P 424 (476)
Q Consensus 355 ~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 424 (476)
. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+ .
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 56 356666677663 3334 899999999999764 455233334444899999999999999865 2
Q ss_pred C----------CC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 038936 425 M----------KP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468 (476)
Q Consensus 425 ~----------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 468 (476)
. .| ++.++..++......|+ +|.++++++.+..|+++.+...
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 1 24 56677566666666787 8999999999999999866543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.39 E-value=9.4e-11 Score=105.71 Aligned_cols=160 Identities=9% Similarity=-0.080 Sum_probs=82.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhccCCCCCch----HHHHHHHHHHhhhhhhhHHHHHHHHHHcC--C-Cc--hHHHHH
Q 038936 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKF----TLSSVLSAVSAIQCLRLGKEIHGYIMRTG--F-DS--DEVVWS 198 (476)
Q Consensus 128 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~ 198 (476)
.....+...|++++|...+++.....+ ..+.. .+..+...+...|+++.|.+.+++..... . .+ ...++.
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344556677888888888888765221 11111 23444455556666777666666654421 0 11 112344
Q ss_pred HHHHHHHcCCCHHHHHHHHHhhccc-----------chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC----CHhhH
Q 038936 199 ALSDMYGKCGSINEARQIFDKMVDR-----------DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP----NAFTF 263 (476)
Q Consensus 199 ~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~ 263 (476)
.+...+...|++++|...+++..+. ....+..+...+...|++++|...+.+..+..... ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 4555666666666666666655321 01233445555566666666666666555432111 11233
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHH
Q 038936 264 AGVLNACADHAAEELGKQVHGYMTR 288 (476)
Q Consensus 264 ~~l~~~~~~~~~~~~a~~~~~~~~~ 288 (476)
..+...+...|++++|...++....
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444445555555555555555543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.5e-12 Score=109.31 Aligned_cols=225 Identities=10% Similarity=0.012 Sum_probs=146.3
Q ss_pred CHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HhhHHHHHHHHhccccHHHHHHHH
Q 038936 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS----GIRPN-AFTFAGVLNACADHAAEELGKQVH 283 (476)
Q Consensus 209 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 283 (476)
++++|...|++. +..|...|++++|...|.+..+. |-+++ ..++..+...+...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 488888877654 67788888888888888877653 21111 345666666666677777777666
Q ss_pred HHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCC-c-
Q 038936 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN-GMPDKALEYFELLLKSGTQP-D- 360 (476)
Q Consensus 284 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~-~- 360 (476)
+...+. +...|+...+ ..+++.+...|... |++++|+..|++.++..... +
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 655442 1112222211 23566777888885 88888888888877632110 1
Q ss_pred ---HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCCh-----hhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHH-
Q 038936 361 ---HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA-----DHYACIVDLLARSGRFHEAEDVISKM-PMKPDKF- 430 (476)
Q Consensus 361 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~- 430 (476)
..++..+...+...|++++|+..|+++.+...-.+.. ..+..++.++...|++++|+..+++. ...|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 3467778888889999999999999888642222221 14677888888999999999999886 4445422
Q ss_pred -----HHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 038936 431 -----LWASLLGGCR--IHGNLDLAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 431 -----~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
.+..++.++. ..+++++|+..|+++.+++|.+...+..+-
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k 281 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIK 281 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 2344555554 347788899999888888887655554443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-09 Score=98.86 Aligned_cols=158 Identities=9% Similarity=0.046 Sum_probs=90.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC--C--Ccc----hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCc----hHHH
Q 038936 96 NTMISGFTKGGSLEQARNLFDEMPQ--R--DNF----SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNK----FTLS 163 (476)
Q Consensus 96 ~~l~~~~~~~g~~~~a~~~~~~~~~--~--~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ 163 (476)
......+...|++++|...+++... + +.. .++.+...+...|++++|.+.+++........++. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3444455567777777777655432 1 111 34455566666777777777777665422222222 2234
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHc----CCC--c-hHHHHHHHHHHHHcCCCHHHHHHHHHhhccc--------chhhH
Q 038936 164 SVLSAVSAIQCLRLGKEIHGYIMRT----GFD--S-DEVVWSALSDMYGKCGSINEARQIFDKMVDR--------DVVSW 228 (476)
Q Consensus 164 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~ 228 (476)
.+...+...|+++.|.+.++..++. +.+ | ....+..+...+...|++++|...+++..+. ....+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 4555666677777777777666542 211 2 2344555666777777777777777665321 11345
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 038936 229 TAMIGRYFQEGRREEGFALFSELIK 253 (476)
Q Consensus 229 ~~l~~~~~~~~~~~~a~~~~~~~~~ 253 (476)
..+...+...|++++|...+++...
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5566667777777777777776654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9.7e-13 Score=101.37 Aligned_cols=140 Identities=12% Similarity=0.004 Sum_probs=108.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 038936 332 LIAGYAQNGMPDKALEYFELLLKSGTQPD-HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410 (476)
Q Consensus 332 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 410 (476)
|...+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|++.|+++.+. .|.+...|..++.+|.+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 445556677888888888877653 233 345566788888999999999999988875 345677888899999999
Q ss_pred CChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCCchhHHHHHHhhhc
Q 038936 411 GRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRA-AEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 411 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
|++++|+..|+++ ...| +...|..++..+...|++++|.+. ++++++++|+++.++...+.++..
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 9999999999885 4455 577888999999999998876655 699999999999999988887753
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.9e-11 Score=100.35 Aligned_cols=178 Identities=12% Similarity=0.018 Sum_probs=120.7
Q ss_pred chhhHHHHHHHhhhcCChhhHHHHHccCCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC-cHHHHH
Q 038936 294 YSFAASALVHMYSKCGNVENSKKVFNGMPR--PD----LVSWTSLIAGYAQNGMPDKALEYFELLLKSGT-QP-DHIVFV 365 (476)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~-~~~~~~ 365 (476)
+...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++.++... .| ....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344444555566666666666666666553 22 34566677777777788888888877777532 11 134555
Q ss_pred HHHHHHhc--------cCchhhHHHHHHHHHHhcCCCCChhhH-----------------HHHHHHHHhcCChhhHHHHH
Q 038936 366 GVLTACTH--------AGLVDKGLQYFHSIKEKHGLTYTADHY-----------------ACIVDLLARSGRFHEAEDVI 420 (476)
Q Consensus 366 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~ 420 (476)
.+..++.. .|++++|+..|+++.+.. |.+.... ..++.+|.+.|++++|+..|
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 66666766 778888888888877652 2222223 56788999999999999999
Q ss_pred hhC-CCCC----cHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCch---hHHHHHHhh
Q 038936 421 SKM-PMKP----DKFLWASLLGGCRIH----------GNLDLAKRAAEALFEIEPENPA---TYVTMANIY 473 (476)
Q Consensus 421 ~~~-~~~p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~y 473 (476)
+++ ...| ....+..++.++... |++++|+..++++++..|+++. +...|..++
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~ 242 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRAR 242 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 986 2233 345777888888766 8999999999999999999864 344444443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.30 E-value=6e-11 Score=102.31 Aligned_cols=230 Identities=10% Similarity=0.051 Sum_probs=130.9
Q ss_pred cCCCHHHHHHHHHhhcc-------c----chhhHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CHhhHHHHH
Q 038936 206 KCGSINEARQIFDKMVD-------R----DVVSWTAMIGRYFQEGRREEGFALFSELIKS------GIRP-NAFTFAGVL 267 (476)
Q Consensus 206 ~~~~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~ 267 (476)
..|++++|+..+++..+ + ...++..+...|...|++++|...+.+..+. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44555555555554422 1 1234556666666666666666666665543 1111 223444444
Q ss_pred HHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHH
Q 038936 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE 347 (476)
Q Consensus 268 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 347 (476)
..+...|+++.|...+.++.+.... ....-.......+..+...|...|++++|+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 148 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREK------------------------VLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHH------------------------HcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555555544432000 0000000123456677778888888888888
Q ss_pred HHHHHHHc------CCCC-cHHHHHHHHHHHhccCchhhHHHHHHHHHHhc------C-CCCChhhHHHHHHHHHhcCC-
Q 038936 348 YFELLLKS------GTQP-DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH------G-LTYTADHYACIVDLLARSGR- 412 (476)
Q Consensus 348 ~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~- 412 (476)
.++++.+. +..| ...++..+...+...|++++|.++++++.+.. . .+.....+..+...+...+.
T Consensus 149 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (283)
T 3edt_B 149 YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKR 228 (283)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCch
Confidence 88888764 1123 34567888889999999999999999888631 1 12223344444444444443
Q ss_pred -----hhhHHHHHhhCC-CCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 413 -----FHEAEDVISKMP-MKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 413 -----~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
+.++...++... ..| ...++..++..+...|++++|...++++++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 229 RDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 333444444443 334 34578889999999999999999999998753
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=6.1e-11 Score=102.74 Aligned_cols=176 Identities=13% Similarity=0.017 Sum_probs=125.8
Q ss_pred cHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC-----CC----hhhHHHHHHHHHhcCChHHH
Q 038936 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-----PD----LVSWTSLIAGYAQNGMPDKA 345 (476)
Q Consensus 275 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A 345 (476)
+++.|...+... ...|...|++++|...|++..+ .+ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 466666666554 3345667777777777765542 11 35788888899999999999
Q ss_pred HHHHHHHHHcCC---CCc--HHHHHHHHHHHhcc-CchhhHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChhh
Q 038936 346 LEYFELLLKSGT---QPD--HIVFVGVLTACTHA-GLVDKGLQYFHSIKEKHGLTYT----ADHYACIVDLLARSGRFHE 415 (476)
Q Consensus 346 ~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 415 (476)
+..+++.++... .+. ..++..+...|... |++++|+..|+++.+...-..+ ..++..++..+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999988876321 111 34788889999996 9999999999999864221111 3568889999999999999
Q ss_pred HHHHHhhC-CCCC---cH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 038936 416 AEDVISKM-PMKP---DK-----FLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 416 A~~~~~~~-~~~p---~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 465 (476)
|+..|+++ ...| .. ..+..++.++...|++++|+..++++++++|+.+.+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 99999986 2222 21 157788888999999999999999999999986653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.4e-10 Score=91.53 Aligned_cols=163 Identities=15% Similarity=0.128 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038936 194 EVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270 (476)
Q Consensus 194 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (476)
...+..++..+...|++++|...++++.+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345666777777888888888888877542 44566777777778888888888887777653 33455566666666
Q ss_pred hccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 038936 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350 (476)
Q Consensus 271 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 350 (476)
...|+++.|...++.+.+.. + .+...+..+...+...|++++|...++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~-------------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-P-------------------------------INFNVRFRLGVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-T-------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-c-------------------------------HhHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66677777777666665542 2 233455556666777777777777777
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
++.+.. +.+...+..++..+...|++++|.+.++++.+.
T Consensus 135 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 135 IALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 777653 335566777777778888888888888777754
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-10 Score=87.22 Aligned_cols=132 Identities=20% Similarity=0.322 Sum_probs=112.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (476)
.|..++..+...|++++|..+++++.+.+ +.+...+..++..+...|++++|...++++... .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56778888999999999999999998864 345677888888999999999999999999875 345677788899999
Q ss_pred HhcCChhhHHHHHhhC-CC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 408 ARSGRFHEAEDVISKM-PM-KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 408 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
...|++++|.+.++++ .. +.+...+..++..+...|++++|...++++++.+|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999986 22 3367788889999999999999999999999999863
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-08 Score=93.88 Aligned_cols=368 Identities=11% Similarity=0.009 Sum_probs=210.4
Q ss_pred hcC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc--ccchHHHHHHHHHHhcCC-HHHHHH
Q 038936 38 QNR-ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE--RDVCSYNTMISGFTKGGS-LEQARN 113 (476)
Q Consensus 38 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~-~~~a~~ 113 (476)
+.| +++.|..+|+.+... -|. |+++.+..+|+.... |+...|...+....+.++ .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 477788888877764 233 888999999988775 777788887777766653 344555
Q ss_pred HHhcCCC------CCcchHHHHHHHHH----hcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHH
Q 038936 114 LFDEMPQ------RDNFSWTAMISGYV----RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183 (476)
Q Consensus 114 ~~~~~~~------~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 183 (476)
+|+.... .+...|...+..+. ..|+.+.+.++|+.... .+...-...|..... +....+...+..++.
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFEN-FELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHH-HHHHHCHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHH-HHHHhccccHHHHHH
Confidence 5555331 24456666666544 34567778888888875 211111111111111 111111111222211
Q ss_pred HHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc----cchhhHHHHHHHHHhcC--C-----hhHHHHHHHHHH
Q 038936 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD----RDVVSWTAMIGRYFQEG--R-----REEGFALFSELI 252 (476)
Q Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~ 252 (476)
+.. +.+..|..+++.+.+ .+...|...+.--...+ - .+.+..+|++++
T Consensus 148 ~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al 206 (493)
T 2uy1_A 148 DTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYIL 206 (493)
T ss_dssp HHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHH
Confidence 110 122233333332211 12224444333221111 0 234566777777
Q ss_pred HcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhH-HHHHccCC---------
Q 038936 253 KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS-KKVFNGMP--------- 322 (476)
Q Consensus 253 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~--------- 322 (476)
... +.+...|...+..+.+.|+.+.|..++++.... |.+...+.. |....+.++. ..+.+...
T Consensus 207 ~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~ 279 (493)
T 2uy1_A 207 DSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEK 279 (493)
T ss_dssp HHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC---------
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhh
Confidence 653 445666666666677788888888888888877 433333222 2111111111 11111110
Q ss_pred -C--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc-cCchhhHHHHHHHHHHhcCCCCChh
Q 038936 323 -R--PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH-AGLVDKGLQYFHSIKEKHGLTYTAD 398 (476)
Q Consensus 323 -~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~ 398 (476)
. .....|...+....+.++.+.|..+|++. .. ...+...|...+..-.. .++.+.|..+|+...+.+ +.++.
T Consensus 280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~ 355 (493)
T 2uy1_A 280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTL 355 (493)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHH
T ss_pred hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHH
Confidence 0 11245666777777788899999999999 32 22344445433322222 347999999999999864 33455
Q ss_pred hHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 399 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
.+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++++
T Consensus 356 ~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 356 LKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66777888889999999999999984 2577888888877888999999999999886
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.28 E-value=7e-11 Score=96.67 Aligned_cols=188 Identities=10% Similarity=0.006 Sum_probs=130.2
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHH
Q 038936 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK 344 (476)
Q Consensus 265 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 344 (476)
.....+...|+++.|...++...+.. |.+...+... ..... ..........+..+|.+.|++++
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~~~~----------~~~~~~~~~~lg~~~~~~g~~~~ 72 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NVDKN----------SEISSKLATELALAYKKNRNYDK 72 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HSCTT----------SHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hhcch----------hhhhHHHHHHHHHHHHHCCCHHH
Confidence 33445667788888888888877763 1122222110 00000 00112334458889999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC--hhhHHHHHhh
Q 038936 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR--FHEAEDVISK 422 (476)
Q Consensus 345 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~ 422 (476)
|+..|++.++.. +-+...+..+..++...|++++|++.|+++.+. .|.+...+..++.+|...|+ ...+...++.
T Consensus 73 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~ 149 (208)
T 3urz_A 73 AYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKK 149 (208)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999964 336678888999999999999999999999975 35567789999998876654 4556677777
Q ss_pred CC-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 423 MP-MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 423 ~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
.. ..|....+...+.++...|++++|+..|+++++++|++ .....|..+
T Consensus 150 ~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 150 LSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 63 22333455566777788899999999999999999964 355555543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.9e-11 Score=117.38 Aligned_cols=192 Identities=9% Similarity=-0.020 Sum_probs=104.4
Q ss_pred hccccHHHHHHHHHHHH--------HhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhc
Q 038936 271 ADHAAEELGKQVHGYMT--------RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQN 339 (476)
Q Consensus 271 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 339 (476)
...|++++|.+.++... +.. +.+...+..+...+...|++++|+..|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 45566666666666665 222 33445555566666666666666666666553 2445566666666666
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 038936 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 419 (476)
|++++|+..|++..+.. +.+...+..+..++...|++++ ++.|+++.+. .+.+...+..++.++.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666643 1234455556666666666666 6666666653 233445566666666666666666666
Q ss_pred HhhC-CCCCc-HHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCCCchhHH
Q 038936 420 ISKM-PMKPD-KFLWASLLGGCRIHGN-----LDLAKRAAEALFEIEPENPATYV 467 (476)
Q Consensus 420 ~~~~-~~~p~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~~~~ 467 (476)
|+++ ...|+ ...+..++.++...|+ .++..+..+...++.+.++....
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~ 611 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQ 611 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHH
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHH
Confidence 6664 34443 3455555555544444 23333333333344444444433
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-10 Score=86.81 Aligned_cols=115 Identities=13% Similarity=0.051 Sum_probs=96.4
Q ss_pred CCCcH-HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHH
Q 038936 357 TQPDH-IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWA 433 (476)
Q Consensus 357 ~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 433 (476)
+.|+. ..+...+..+.+.|++++|++.|+++++. .|.+...|..++.+|.+.|++++|++.++++ ...| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34443 35667788888899999999999988865 3556778888999999999999999999885 4344 677899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 434 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
.++.++...|++++|++.|+++++++|+|+.++..|+.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998875
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.22 E-value=4.6e-10 Score=96.68 Aligned_cols=129 Identities=11% Similarity=0.057 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHc------CC-CchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc----------
Q 038936 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRT------GF-DSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---------- 223 (476)
Q Consensus 161 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------- 223 (476)
.+..+...+...|+++.|...++..++. +. +....++..+...|...|++++|+..+++..+.
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444444444444444444332 11 223456666677777777777777777666321
Q ss_pred -chhhHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CHhhHHHHHHHHhccccHHHHHHHHHHHHHh
Q 038936 224 -DVVSWTAMIGRYFQEGRREEGFALFSELIKS------GIRP-NAFTFAGVLNACADHAAEELGKQVHGYMTRI 289 (476)
Q Consensus 224 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 289 (476)
....+..+...|...|++++|...+++..+. +-.| ...++..+...+...|+++.|...++++.+.
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1234566666677777777777777666553 1112 2345555666666777777777777666543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.8e-10 Score=108.88 Aligned_cols=181 Identities=9% Similarity=-0.023 Sum_probs=108.2
Q ss_pred HhcCChhHHHHHHHHHH--------HcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhh
Q 038936 236 FQEGRREEGFALFSELI--------KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307 (476)
Q Consensus 236 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 307 (476)
...|++++|+..+++.. +.. +.+...+..+...+...|++++|...++.+.+.+ +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55666777777776666 321 3334455556666666777777777777666654 4455666666666777
Q ss_pred cCChhhHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHH
Q 038936 308 CGNVENSKKVFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 384 (476)
.|++++|+..|+++.+ | +...|..+..++.+.|++++ ++.|++.++.+ +.+...+..+..++...|++++|++.|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777766653 2 44566666666777777777 77777766643 224455666666677777777777777
Q ss_pred HHHHHhcCCCC-ChhhHHHHHHHHHhcCC--------hhhHHHHHhhC
Q 038936 385 HSIKEKHGLTY-TADHYACIVDLLARSGR--------FHEAEDVISKM 423 (476)
Q Consensus 385 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~ 423 (476)
+++.+ ..| +...+..++.++...|+ +++|.+.+..+
T Consensus 558 ~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 558 DEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred Hhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 66653 233 34455556666544332 55555555554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.2e-10 Score=108.25 Aligned_cols=160 Identities=11% Similarity=0.056 Sum_probs=118.4
Q ss_pred cCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHH
Q 038936 308 CGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 384 (476)
.|++++|...+++..+ .+...+..+...+...|++++|++.+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3677778888877764 345678888888999999999999999998864 335677888888899999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcC
Q 038936 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIH---GNLDLAKRAAEALFEIE 459 (476)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 459 (476)
+++.+. .+.+...+..++.+|.+.|++++|.+.++++ ...| +...+..++..+... |++++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 998875 3456778888999999999999999999886 3334 567888888888888 99999999999999999
Q ss_pred CCCchhHHHHH
Q 038936 460 PENPATYVTMA 470 (476)
Q Consensus 460 p~~~~~~~~l~ 470 (476)
|++...+..|+
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 98877776554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.19 E-value=3e-09 Score=90.49 Aligned_cols=209 Identities=8% Similarity=-0.011 Sum_probs=133.3
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHhhccc---c---hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CC-CHhhH
Q 038936 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDR---D---VVSWTAMIGRYFQEGRREEGFALFSELIKSGI-RP-NAFTF 263 (476)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~ 263 (476)
.+...+..+...+.+.|++++|+..|+.+.+. + ...+..+..+|...|++++|...|++..+... .| ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44556667778888888899998888888653 2 34677778888888999999999888887632 11 23345
Q ss_pred HHHHHHHhc--------cccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHH
Q 038936 264 AGVLNACAD--------HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335 (476)
Q Consensus 264 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 335 (476)
..+..++.. .|+++.|...++.+.+.. |.+......+.......+.. ...+..+...
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~--------------~~~~~~la~~ 157 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKL--------------ARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHH--------------HHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Confidence 556666666 888888888888888764 22322222221111111111 1124567778
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHhcc----------CchhhHHHHHHHHHHhcCCCCC-hhhHHH
Q 038936 336 YAQNGMPDKALEYFELLLKSGTQP--DHIVFVGVLTACTHA----------GLVDKGLQYFHSIKEKHGLTYT-ADHYAC 402 (476)
Q Consensus 336 ~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ 402 (476)
|.+.|++++|+..|+++++..... ....+..+..++... |++++|...|+++.+.++-.|. ......
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 237 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEEL 237 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 889999999999999988754221 234666777777765 8888999999988876322111 123334
Q ss_pred HHHHHHhcCChhh
Q 038936 403 IVDLLARSGRFHE 415 (476)
Q Consensus 403 l~~~~~~~g~~~~ 415 (476)
+..++.+.+++++
T Consensus 238 l~~~~~~~~~~~~ 250 (261)
T 3qky_A 238 YTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhh
Confidence 4444444444433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.17 E-value=5.1e-09 Score=88.75 Aligned_cols=222 Identities=9% Similarity=-0.030 Sum_probs=148.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCCh
Q 038936 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311 (476)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (476)
++-..-.|.+..++.-. .+.....+......+.+++...|++... ..-.|....+..+. .|...+
T Consensus 20 ikn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT--
T ss_pred HHHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc--
Confidence 34455678888887733 2222122223334445666666665431 11123322333333 333322
Q ss_pred hhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhccCchhhHHHHHHHH
Q 038936 312 ENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT-QPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387 (476)
Q Consensus 312 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 387 (476)
|+..|++... ++...+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++++
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777776653 4556667788889999999999999999887653 235567788889999999999999999999
Q ss_pred HHhcCCCC-----ChhhHHHHHHH--HHhcC--ChhhHHHHHhhC-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 388 KEKHGLTY-----TADHYACIVDL--LARSG--RFHEAEDVISKM-PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 388 ~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
.+. .| +..+...++.+ ....| ++.+|..+|+++ ...|+...-..+..++...|++++|++.++.+.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 864 66 34555556555 44445 899999999997 4446533333344478899999999999998887
Q ss_pred c----------CCCCchhHHHHHHhh
Q 038936 458 I----------EPENPATYVTMANIY 473 (476)
Q Consensus 458 ~----------~p~~~~~~~~l~~~y 473 (476)
. +|+|+.++.+++.++
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~ 265 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLA 265 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHH
Confidence 6 588999997775443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.15 E-value=7.1e-10 Score=88.00 Aligned_cols=157 Identities=8% Similarity=-0.065 Sum_probs=112.2
Q ss_pred hHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH-Hh
Q 038936 297 AASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA-CT 372 (476)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 372 (476)
.+......+...|++++|...|+++.+ .+...+..+...+...|++++|+..+++..+.. |+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344566677788888888888888775 355677788888888888888888888876643 344333222211 12
Q ss_pred ccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc---HHHHHHHHHHHHhcCChHHH
Q 038936 373 HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD---KFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 373 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A 448 (476)
..+....|+..++++.+. .|.+...+..++.++...|++++|+..|+++ ...|+ ...+..++..+...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 223334578888888864 2445778888889999999999999998885 44553 45788888888888999999
Q ss_pred HHHHHHHHH
Q 038936 449 KRAAEALFE 457 (476)
Q Consensus 449 ~~~~~~~~~ 457 (476)
...|++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-09 Score=89.62 Aligned_cols=184 Identities=9% Similarity=-0.023 Sum_probs=103.2
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHHHhCCCC--chhhHHHHHHHhhhcCChhhHHHHHccCCC--CChh----hHHHHH
Q 038936 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDP--YSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLV----SWTSLI 333 (476)
Q Consensus 262 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~~l~ 333 (476)
.+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+++.+ |+.. .+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 33344455666666777777776666542111 123444555556666666666665555542 2211 233333
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhh--------------
Q 038936 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH-------------- 399 (476)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------- 399 (476)
.++...+.. .+ ..|..+...+...|++++|+..|+++.+.. |.+...
T Consensus 86 ~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 86 LTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp HHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHH
Confidence 333321100 00 000011111223456666666666666431 112111
Q ss_pred ---HHHHHHHHHhcCChhhHHHHHhhC-CCCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 038936 400 ---YACIVDLLARSGRFHEAEDVISKM-PMKPD----KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 400 ---~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 464 (476)
...++..|.+.|++++|+..|+++ ...|+ ...+..++.++...|++++|++.++++....|++..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 135677899999999999999986 33333 247888999999999999999999999999998653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.13 E-value=5.4e-08 Score=83.42 Aligned_cols=162 Identities=9% Similarity=0.093 Sum_probs=124.8
Q ss_pred CChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc------h
Q 038936 309 GNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPD--KALEYFELLLKSGTQPDHIVFVGVLTACTHAGL------V 377 (476)
Q Consensus 309 ~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~ 377 (476)
+++++++.+++.+.+ .+..+|+.-...+.+.|+++ ++++.++++++.++ -|...|+.-...+...+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhH
Confidence 456666666666653 45566777777777778877 99999999998764 466677766666666666 8
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhh-HHHHHhhC-CC----CCcHHHHHHHHHHHHhcCChHHHHHH
Q 038936 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE-AEDVISKM-PM----KPDKFLWASLLGGCRIHGNLDLAKRA 451 (476)
Q Consensus 378 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~A~~~ 451 (476)
+++++.+++++.. .+-+...|+.+..++.+.|+..+ +..+.+++ .. ..++..+..++..+...|+.++|+++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 8999999999975 46678889999999999998555 55566665 21 23677888999999999999999999
Q ss_pred HHHHHH-cCCCCchhHHHHHHhh
Q 038936 452 AEALFE-IEPENPATYVTMANIY 473 (476)
Q Consensus 452 ~~~~~~-~~p~~~~~~~~l~~~y 473 (476)
++.+.+ .+|-+...|...+..+
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHTC
T ss_pred HHHHHhccChHHHHHHHHHHhhc
Confidence 999997 8999988888777654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=5.6e-09 Score=89.99 Aligned_cols=160 Identities=8% Similarity=-0.003 Sum_probs=81.3
Q ss_pred HhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CChhhHHHH-HHHH
Q 038936 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLVSWTSL-IAGY 336 (476)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l-~~~~ 336 (476)
...+..+...+...|+++.|...++...+.. |.+...+..+..++...|++++|...++++.. |+....... ...+
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 3344444555556666666666666665553 34445555566666666666666666666553 332222111 1224
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH
Q 038936 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416 (476)
Q Consensus 337 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 416 (476)
...++.++|+..+++..+.. +.+...+..+...+...|++++|++.|+++.....-..+...+..++.++...|+.++|
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 44555555555555555543 22344455555555555666666666655554421111233445555555555555555
Q ss_pred HHHHh
Q 038936 417 EDVIS 421 (476)
Q Consensus 417 ~~~~~ 421 (476)
...++
T Consensus 275 ~~~~r 279 (287)
T 3qou_A 275 ASXYR 279 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.11 E-value=7.3e-09 Score=84.56 Aligned_cols=128 Identities=9% Similarity=0.059 Sum_probs=81.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCC
Q 038936 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310 (476)
Q Consensus 231 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 310 (476)
+..+|...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.+.. |.+...+..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 6777777788888888887777754 3455667777777777777888888777777765 4556666666666655443
Q ss_pred --hhhHHHHHccCCCCChhh--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH
Q 038936 311 --VENSKKVFNGMPRPDLVS--WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362 (476)
Q Consensus 311 --~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 362 (476)
...+...++.+..|++.. +.....++...|++++|+..|++.++ ..|+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 138 QEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 344556666666555432 33344455566677777777777766 345544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-09 Score=94.87 Aligned_cols=200 Identities=11% Similarity=0.035 Sum_probs=123.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc-cccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHH
Q 038936 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD-HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315 (476)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (476)
..|++++|.+++++..+.. +.. +.. .++++.|...+... ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3567888888888876642 111 111 35566666655543 34556667777777
Q ss_pred HHHccCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCc--HHHHHHHHHHHhccCchhhHH
Q 038936 316 KVFNGMPR-----PD----LVSWTSLIAGYAQNGMPDKALEYFELLLKSGT---QPD--HIVFVGVLTACTHAGLVDKGL 381 (476)
Q Consensus 316 ~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~ 381 (476)
..|.+..+ .+ ..+|+.+...|...|++++|+..|++.++... .|. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 66665542 11 23566777777777888888777777654310 111 2456667777777 8888888
Q ss_pred HHHHHHHHhcCCCC----ChhhHHHHHHHHHhcCChhhHHHHHhhC-CC---CC---c-HHHHHHHHHHHHhcCChHHHH
Q 038936 382 QYFHSIKEKHGLTY----TADHYACIVDLLARSGRFHEAEDVISKM-PM---KP---D-KFLWASLLGGCRIHGNLDLAK 449 (476)
Q Consensus 382 ~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p---~-~~~~~~l~~~~~~~g~~~~A~ 449 (476)
+.|+++.+...-.. ...++..++.+|.+.|++++|++.|+++ .. .+ . ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88877765321111 1345667777788888888888777765 11 11 1 125556666666678888888
Q ss_pred HHHHHHHHcCCCCch
Q 038936 450 RAAEALFEIEPENPA 464 (476)
Q Consensus 450 ~~~~~~~~~~p~~~~ 464 (476)
..+++++ ++|....
T Consensus 216 ~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 216 KCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHT-TSTTSTT
T ss_pred HHHHHHh-CCCCCCC
Confidence 8888888 7776543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.3e-09 Score=86.20 Aligned_cols=183 Identities=9% Similarity=-0.081 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC-CChhhHHHHHHHHHhcC----ChHHHHHHHHH
Q 038936 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-PDLVSWTSLIAGYAQNG----MPDKALEYFEL 351 (476)
Q Consensus 277 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~A~~~~~~ 351 (476)
.+|.+.|+...+.| ++..+..+...|...+++++|...|++..+ .++..+..+...|.. + ++++|+..|++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 35677788877764 566777888899999999999999998775 567788888888887 6 89999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHhc----cCchhhHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHh----cCChhhHHHHH
Q 038936 352 LLKSGTQPDHIVFVGVLTACTH----AGLVDKGLQYFHSIKEKHGLTYT---ADHYACIVDLLAR----SGRFHEAEDVI 420 (476)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~ 420 (476)
..+.| +...+..+...|.. .+++++|+++|++..+. .|+ +..+..|+.+|.. .+++++|.+.|
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 98865 56677778888877 88999999999998854 332 6788899999998 88999999999
Q ss_pred hhC-CCCCcHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 038936 421 SKM-PMKPDKFLWASLLGGCRIH-G-----NLDLAKRAAEALFEIEPENPATYVTMAN 471 (476)
Q Consensus 421 ~~~-~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 471 (476)
++. ...++...+..+...|... | ++++|+..|+++.+..+ +.+...|..
T Consensus 153 ~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~--~~A~~~l~~ 208 (212)
T 3rjv_A 153 KGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF--DTGCEEFDR 208 (212)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 996 3334566777888877764 4 89999999999999876 445555543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.4e-09 Score=83.98 Aligned_cols=158 Identities=9% Similarity=0.051 Sum_probs=110.5
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CChhhHHHHHHH-HHhc
Q 038936 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLVSWTSLIAG-YAQN 339 (476)
Q Consensus 263 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~-~~~~ 339 (476)
+......+...|+++.|...++...+.. |.+...+..+..++...|++++|+..++++.+ |++..+...... +...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 3344455667777777777777766654 45566777788888888888888888888775 433332222212 2233
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 038936 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 419 (476)
++..+|+..+++..+.. +.+...+..+..++...|++++|...|+++.+..+...+...+..++.++...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 34455788888888854 23567788888889999999999999999886422222355788899999999999999988
Q ss_pred Hhh
Q 038936 420 ISK 422 (476)
Q Consensus 420 ~~~ 422 (476)
|++
T Consensus 167 y~~ 169 (176)
T 2r5s_A 167 YRR 169 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=6.2e-10 Score=85.54 Aligned_cols=141 Identities=13% Similarity=0.057 Sum_probs=89.9
Q ss_pred HHHHhhhcCChhhHHHHHccCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCch
Q 038936 301 LVHMYSKCGNVENSKKVFNGMPRP---DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377 (476)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 377 (476)
|..++...|++++|+..++..... +...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..++...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 344555666677777666666543 23455567777778888888888888877753 23556777777777888888
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH-HhhC-CCCC-cHHHHHHHHHHHHhcCC
Q 038936 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV-ISKM-PMKP-DKFLWASLLGGCRIHGN 444 (476)
Q Consensus 378 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~-~~~p-~~~~~~~l~~~~~~~g~ 444 (476)
++|+..|+++.+. .|.+...+..++.+|.+.|++++|.+. ++++ ...| ++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888877764 234566777778888888887766654 4553 4444 44455555555555553
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2e-09 Score=92.85 Aligned_cols=162 Identities=8% Similarity=-0.117 Sum_probs=122.2
Q ss_pred CCchhhHHHHHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHH-HH
Q 038936 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV-GV 367 (476)
Q Consensus 292 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l 367 (476)
+.+...+..+...+...|++++|...|+++.+ | +...+..+...+.+.|++++|+..++++.... |+..... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 55566667777888888999999988888763 3 45678888888889999999999888887653 4443322 22
Q ss_pred HHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc---HHHHHHHHHHHHhcC
Q 038936 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD---KFLWASLLGGCRIHG 443 (476)
Q Consensus 368 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g 443 (476)
...+...++.+.|++.++++... .|.+...+..++.+|...|++++|+..|+++ ...|+ ...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 33356777788888888888865 3556778888888899999999999888886 33343 567888888888888
Q ss_pred ChHHHHHHHHHHHH
Q 038936 444 NLDLAKRAAEALFE 457 (476)
Q Consensus 444 ~~~~A~~~~~~~~~ 457 (476)
+.++|...|++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 88888888888765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.05 E-value=5.8e-09 Score=85.62 Aligned_cols=92 Identities=7% Similarity=-0.041 Sum_probs=69.1
Q ss_pred HHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCch
Q 038936 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377 (476)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 377 (476)
+..+...+...|++++|...|++...++...|..+...|...|++++|+..+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44566677778888888888888777777777778888888888888888888877754 33556677777777788888
Q ss_pred hhHHHHHHHHHHh
Q 038936 378 DKGLQYFHSIKEK 390 (476)
Q Consensus 378 ~~a~~~~~~~~~~ 390 (476)
++|++.++++.+.
T Consensus 88 ~~A~~~~~~al~~ 100 (213)
T 1hh8_A 88 DLAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 8888888777763
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-09 Score=94.46 Aligned_cols=203 Identities=9% Similarity=-0.056 Sum_probs=103.7
Q ss_pred hhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHc-CCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHH
Q 038936 171 AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK-CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249 (476)
Q Consensus 171 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 249 (476)
..|++++|.+++++..+..- .. +.+ .+++++|...|... ...|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHH
Confidence 46788888888887765421 10 122 57888888877654 566778888888888888
Q ss_pred HHHHcCC---CC--CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCC
Q 038936 250 ELIKSGI---RP--NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324 (476)
Q Consensus 250 ~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (476)
+..+... .+ -..++..+...+...|++++|...+++..+.-.. .|+...
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~---------------~g~~~~----------- 114 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE---------------NGTPDT----------- 114 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHT---------------TTCHHH-----------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH---------------cCCHHH-----------
Confidence 7755310 01 1224445555555566666666666555433100 000000
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---C--cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC---
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ---P--DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT--- 396 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 396 (476)
-..++..+...|.. |++++|+..|++.++.... + ...++..+...+...|++++|++.|+++.....-.+.
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence 01234444444544 5555555555554432100 0 0234445555555555555555555555542110111
Q ss_pred -hhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 397 -ADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 397 -~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
...+..++.++...|++++|...|++
T Consensus 194 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 194 CYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11334444455555566666555555
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.03 E-value=8.4e-09 Score=84.65 Aligned_cols=130 Identities=10% Similarity=-0.075 Sum_probs=89.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 038936 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408 (476)
Q Consensus 329 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 408 (476)
+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|++.++++... .+.+...+..++.+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 4455666777777777777777653 456667777777777777777777777777764 2445666777777777
Q ss_pred hcCChhhHHHHHhhC-CCC----------------C-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 038936 409 RSGRFHEAEDVISKM-PMK----------------P-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 409 ~~g~~~~A~~~~~~~-~~~----------------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 464 (476)
..|++++|++.|+++ ... | ....+..++.++...|++++|...+++++++.|++..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 777777777777764 111 1 2256677777777777777777777777777776543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.6e-09 Score=87.84 Aligned_cols=138 Identities=19% Similarity=0.063 Sum_probs=99.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC--hhhHHHHHHH
Q 038936 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT--ADHYACIVDL 406 (476)
Q Consensus 329 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~ 406 (476)
+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... ..|. ...+..++.+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHH
Confidence 3445666778888888888888776643 54445555666778888888888888754421 1111 2367778888
Q ss_pred HHhcCChhhHHHHHhhCC-CC--C--cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 038936 407 LARSGRFHEAEDVISKMP-MK--P--DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMAN 471 (476)
Q Consensus 407 ~~~~g~~~~A~~~~~~~~-~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 471 (476)
+.+.|++++|++.|++.. .. | ....+...+.++.+.|+.++|...|++++..+|+ +.+...|.+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 889999999999988862 11 4 3346677777888999999999999999999998 777766653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.02 E-value=7.7e-09 Score=77.66 Aligned_cols=128 Identities=16% Similarity=0.295 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhh
Q 038936 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307 (476)
Q Consensus 228 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 307 (476)
|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|+++.|...++.+.+.+ +.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~-------------- 67 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PR-------------- 67 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT--------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CC--------------
Confidence 4455555666666666666666665543 2334445555555555566666666655555442 11
Q ss_pred cCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHH
Q 038936 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 387 (476)
+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++
T Consensus 68 -----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 68 -----------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp -----------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred -----------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 22334445555566666666666666666543 223455555666666666666666666666
Q ss_pred HH
Q 038936 388 KE 389 (476)
Q Consensus 388 ~~ 389 (476)
..
T Consensus 130 ~~ 131 (136)
T 2fo7_A 130 LE 131 (136)
T ss_dssp HH
T ss_pred Hc
Confidence 54
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.01 E-value=5.6e-09 Score=77.21 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-C-CCCcHHHHHHHHHH
Q 038936 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-P-MKPDKFLWASLLGG 438 (476)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 438 (476)
...+..+...+...|++++|.+.++++... .+.+...+..++.++.+.|++++|...++++ . .+.+...+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 456666777778888888888888888764 2445667778888888888888888888775 2 23366788888999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
+...|++++|...++++++.+|+++.++..++.++..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988753
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-08 Score=84.68 Aligned_cols=149 Identities=12% Similarity=-0.042 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCCh-hhHHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP--DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA-DHYACI 403 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l 403 (476)
..+..+...+.+.|++++|+..|+++.+..... ....+..++.++.+.|++++|+..|+++.+..+-.+.. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 344555666777788888888888877653211 12456667777778888888888888877653222221 244555
Q ss_pred HHHHHh------------------cCChhhHHHHHhhC-CCCCcHH-HH-----------------HHHHHHHHhcCChH
Q 038936 404 VDLLAR------------------SGRFHEAEDVISKM-PMKPDKF-LW-----------------ASLLGGCRIHGNLD 446 (476)
Q Consensus 404 ~~~~~~------------------~g~~~~A~~~~~~~-~~~p~~~-~~-----------------~~l~~~~~~~g~~~ 446 (476)
+.++.+ .|++++|+..|+++ ...|+.. .+ ..++..+...|+++
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~ 164 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWV 164 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 555544 67899999999986 4445422 22 34566788899999
Q ss_pred HHHHHHHHHHHcCCCCc---hhHHHHHHhhhc
Q 038936 447 LAKRAAEALFEIEPENP---ATYVTMANIYAS 475 (476)
Q Consensus 447 ~A~~~~~~~~~~~p~~~---~~~~~l~~~y~~ 475 (476)
+|+..|+++++..|+++ .++..++.+|..
T Consensus 165 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~ 196 (225)
T 2yhc_A 165 AVVNRVEGMLRDYPDTQATRDALPLMENAYRQ 196 (225)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH
Confidence 99999999999999886 568888888753
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.00 E-value=4.3e-08 Score=84.82 Aligned_cols=158 Identities=13% Similarity=-0.011 Sum_probs=118.6
Q ss_pred HHHHhhhcCChhhHHHHHccCCC-----CCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----HHHHHH
Q 038936 301 LVHMYSKCGNVENSKKVFNGMPR-----PDL----VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-PD----HIVFVG 366 (476)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 366 (476)
.+..+...|++++|...+++..+ ++. ..+..+...+...+++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45667888889999888887653 111 12334666677888999999999999884322 22 236888
Q ss_pred HHHHHhccCchhhHHHHHHHHHHhcC----CCC-ChhhHHHHHHHHHhcCChhhHHHHHhhC-------CCCC-cHHHHH
Q 038936 367 VLTACTHAGLVDKGLQYFHSIKEKHG----LTY-TADHYACIVDLLARSGRFHEAEDVISKM-------PMKP-DKFLWA 433 (476)
Q Consensus 367 l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~ 433 (476)
++.+|...|++++|...++++.+... ..+ ...++..++.+|.+.|++++|++.++++ ...+ -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999885221 111 2346788999999999999999999875 1122 256888
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHHc
Q 038936 434 SLLGGCRIHGN-LDLAKRAAEALFEI 458 (476)
Q Consensus 434 ~l~~~~~~~g~-~~~A~~~~~~~~~~ 458 (476)
.++.++...|+ +++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999995 69999999999874
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-08 Score=81.14 Aligned_cols=171 Identities=8% Similarity=-0.022 Sum_probs=127.6
Q ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----ChHHHHHHHHH
Q 038936 12 KEALQILHQIS-HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG----NISDAQTLFDE 86 (476)
Q Consensus 12 ~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~ 86 (476)
.+|++.|++.. ..++.++..+...+...+++++|..+|++..+.| ++..+..|...|.. + ++++|+..|++
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 35677777764 6788889999999999999999999999998876 56777777777776 6 89999999998
Q ss_pred cccc-cchHHHHHHHHHHh----cCCHHHHHHHHhcCCCCC-----cchHHHHHHHHHh----cCChhHHHHHHHHHHhc
Q 038936 87 MQER-DVCSYNTMISGFTK----GGSLEQARNLFDEMPQRD-----NFSWTAMISGYVR----YNQPIEALDLYRMMQNF 152 (476)
Q Consensus 87 ~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 152 (476)
..++ ++..+..|...|.. .+++++|..+|++..+.+ +..+..|...|.. .+++++|+..|++...
T Consensus 79 A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~- 157 (212)
T 3rjv_A 79 AVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS- 157 (212)
T ss_dssp HHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-
Confidence 7764 56778888888877 889999999998887754 4677888888887 7788888888888876
Q ss_pred cCCCCCchHHHHHHHHHHhh-h-----hhhhHHHHHHHHHHcC
Q 038936 153 ENSVSNKFTLSSVLSAVSAI-Q-----CLRLGKEIHGYIMRTG 189 (476)
Q Consensus 153 ~~~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~ 189 (476)
. ..+...+..+...+... | +.++|...++...+.|
T Consensus 158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 2 22333444444444332 2 5666666666666665
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-09 Score=83.22 Aligned_cols=117 Identities=11% Similarity=0.008 Sum_probs=85.1
Q ss_pred HHHHHHHcCCCC-cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CC
Q 038936 348 YFELLLKSGTQP-DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PM 425 (476)
Q Consensus 348 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 425 (476)
.++++.+. .| +...+..+...+...|++++|+..|+++... .+.+...|..++.+|...|++++|++.|+++ ..
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444442 33 3345666777778888888888888888764 3446677788888888888888888888875 33
Q ss_pred CC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 038936 426 KP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468 (476)
Q Consensus 426 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 468 (476)
.| +...+..++.++...|++++|+..|++++++.|+++.....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 34 55677788888888899999999999999888887765443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-08 Score=87.94 Aligned_cols=161 Identities=11% Similarity=-0.042 Sum_probs=113.7
Q ss_pred HHHHHHHhhhcCChhhHHHHHccCCC--C-Ch------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---Cc--HHH
Q 038936 298 ASALVHMYSKCGNVENSKKVFNGMPR--P-DL------VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ---PD--HIV 363 (476)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~--~~~ 363 (476)
+...+..+...|++++|...+++..+ + .. ..+..+...+...|++++|+..+++..+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34455667777888888777764432 1 11 22344556677888999999999888764211 11 347
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-------cHH
Q 038936 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT-----ADHYACIVDLLARSGRFHEAEDVISKM-PMKP-------DKF 430 (476)
Q Consensus 364 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~~~ 430 (476)
+..+...|...|++++|...++++.+.....|+ ..++..++.+|.+.|++++|++.++++ ...+ -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 788888899999999999999988732111222 257888899999999999999998875 1111 256
Q ss_pred HHHHHHHHHHhcCChHHH-HHHHHHHHHc
Q 038936 431 LWASLLGGCRIHGNLDLA-KRAAEALFEI 458 (476)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 458 (476)
++..++.++...|++++| ...+++++.+
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 788888899999999999 7878888874
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.7e-09 Score=78.23 Aligned_cols=113 Identities=7% Similarity=0.022 Sum_probs=82.3
Q ss_pred cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHH
Q 038936 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLG 437 (476)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 437 (476)
+...+..+...+...|++++|...++++.+. .+.+...+..++.++...|++++|++.++++ ...| +...+..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3445566666666677777777777666642 2335566666777777777777777777664 2223 5667888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 438 GCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 438 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
++...|++++|+..++++++.+|++..++..++.+|.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 8999999999999999999999999999999988875
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.2e-09 Score=83.05 Aligned_cols=131 Identities=9% Similarity=0.105 Sum_probs=100.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCCh--
Q 038936 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL-LARSGRF-- 413 (476)
Q Consensus 337 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 413 (476)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+++.... +.+...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888888888888764 3466778888888899999999999999988752 4466778888888 7788998
Q ss_pred hhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 038936 414 HEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 414 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
++|+..++++ ...| +...+..++..+...|++++|...++++++.+|+++.....+.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE 156 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 9999999886 3334 5678888888899999999999999999999998876554443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.2e-09 Score=81.93 Aligned_cols=100 Identities=11% Similarity=0.002 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHH
Q 038936 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGC 439 (476)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 439 (476)
..+..+...+...|++++|+..|+++... .|.+...|..++.+|...|++++|+..|+++ ...| ++..|..++.++
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 35666667777778888888888777764 2445667777778888888888888887775 3334 456777888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCc
Q 038936 440 RIHGNLDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 440 ~~~g~~~~A~~~~~~~~~~~p~~~ 463 (476)
...|++++|+..|++++++.|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888888654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.4e-08 Score=74.08 Aligned_cols=112 Identities=18% Similarity=0.129 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHH
Q 038936 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGG 438 (476)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 438 (476)
...+..++..+...|++++|...++++... .+.+...+..++.++...|++++|...++++ ...| +...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345566677777788888888888877764 2445667777888888888888888888775 3333 56778888889
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
+...|++++|...++++++.+|+++..+..++.+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 999999999999999999999999999998887653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-08 Score=75.67 Aligned_cols=112 Identities=8% Similarity=-0.003 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHH
Q 038936 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGG 438 (476)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 438 (476)
...+..++..+...|++++|...++++... .+.+...+..++.++...|++++|++.++++ ...| +...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 445666677777778888888888877764 2445667777788888888888888888775 2233 56678888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
+...|++++|...++++++..|+++.++..++.++.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 889999999999999999999999989988888775
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.93 E-value=8.9e-09 Score=76.44 Aligned_cols=111 Identities=10% Similarity=-0.092 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHH
Q 038936 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGC 439 (476)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 439 (476)
..+..+...+...|++++|+..|+++.+. .+.+...+..++.+|.+.|++++|+..++++ ...| +...|..++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45666677778888888888888888764 2445677888888888888888888888875 3344 567888899999
Q ss_pred HhcCChHHHHHHHHHHHHcC------CCCchhHHHHHHhhh
Q 038936 440 RIHGNLDLAKRAAEALFEIE------PENPATYVTMANIYA 474 (476)
Q Consensus 440 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~y~ 474 (476)
...|++++|+..++++++++ |+++.++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999999 888888888877653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-06 Score=80.83 Aligned_cols=200 Identities=12% Similarity=0.017 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc--
Q 038936 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS-- 254 (476)
Q Consensus 177 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 254 (476)
.+..++++++... +.+...|...+..+.+.|+.++|..++++.... +.....-+ .|....+.++. ++.+.+.
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~-~y~~~~e~~~~---~~~l~~~~~ 270 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL-YYGLVMDEEAV---YGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH-HHHHHTTCTHH---HHHHHHHTC
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH-HHHhhcchhHH---HHHHHHHHH
Confidence 3455566555532 444555655666666666666666666665433 22111111 12221111111 1121111
Q ss_pred -------CCCC---CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcC-ChhhHHHHHccCCC
Q 038936 255 -------GIRP---NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG-NVENSKKVFNGMPR 323 (476)
Q Consensus 255 -------~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 323 (476)
+..+ ....|...+....+.++.+.|..+|+.. +.. +.+..+|......-...+ +.+.|..+|+...+
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 0001 1133444445555566677777777776 221 123333332222222223 57777777776543
Q ss_pred --C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 324 --P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 324 --~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
| ++..|...+....+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++...
T Consensus 349 ~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 349 KHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 23345555666667777777777777752 2345555555555566777777777777665
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-08 Score=79.82 Aligned_cols=110 Identities=13% Similarity=-0.012 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHH
Q 038936 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGG 438 (476)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 438 (476)
...+..+...+...|++++|++.|+++.+. .+.+...+..++.+|.+.|++++|+..++++ ...| +...|..++.+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345666666777777777777777777754 2345666777777777777777777777775 3333 46677778888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
+...|++++|+..|+++++++|+++.++...+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 8888888888888888888888887765555443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=9.4e-09 Score=98.12 Aligned_cols=134 Identities=13% Similarity=0.045 Sum_probs=101.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH
Q 038936 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418 (476)
Q Consensus 339 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 418 (476)
.|++++|+..+++..+.. +.+...+..+...+...|++++|.+.++++.+. .+.+...+..++.+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999998853 335678888999999999999999999999964 34567889999999999999999999
Q ss_pred HHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 419 VISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 419 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
.++++ ...| +...+..++.++...|++++|++.++++++++|+++.++..++.+|..
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 137 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR 137 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99996 3344 577899999999999999999999999999999999999999998864
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.8e-08 Score=76.60 Aligned_cols=107 Identities=16% Similarity=0.041 Sum_probs=73.5
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHH
Q 038936 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCR 440 (476)
Q Consensus 363 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 440 (476)
.+..+...+...|++++|+..|+++... .|.+...|..++.+|.+.|++++|+..|+++ ...| ++..+..++.++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4455566667777777777777777754 2445666777777777777777777777775 2233 4556677777788
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 038936 441 IHGNLDLAKRAAEALFEIEPENPATYVTMAN 471 (476)
Q Consensus 441 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 471 (476)
..|++++|+..|++++++.|+++........
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 8888888888888888888877665544433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.3e-08 Score=81.26 Aligned_cols=153 Identities=16% Similarity=0.029 Sum_probs=96.9
Q ss_pred hcCChhhHHH---HHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHhccCchh
Q 038936 307 KCGNVENSKK---VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS----GTQP-DHIVFVGVLTACTHAGLVD 378 (476)
Q Consensus 307 ~~~~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~ 378 (476)
..|++++|.+ .+..-.......+..+...+...|++++|+..+++..+. +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 443322234456666777777777777777777776652 1111 2345667777778888888
Q ss_pred hHHHHHHHHHHhcCCCC-----ChhhHHHHHHHHHhcCChhhHHHHHhhCC------CCCc--HHHHHHHHHHHHhcCCh
Q 038936 379 KGLQYFHSIKEKHGLTY-----TADHYACIVDLLARSGRFHEAEDVISKMP------MKPD--KFLWASLLGGCRIHGNL 445 (476)
Q Consensus 379 ~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~p~--~~~~~~l~~~~~~~g~~ 445 (476)
+|.+.+++..+.....+ ....+..++.++...|++++|.+.+++.. ..+. ..++..++..+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888887765421122 13346677788888888888888877641 1111 23456777778888888
Q ss_pred HHHHHHHHHHHHcC
Q 038936 446 DLAKRAAEALFEIE 459 (476)
Q Consensus 446 ~~A~~~~~~~~~~~ 459 (476)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88988888888754
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=6e-08 Score=74.14 Aligned_cols=111 Identities=17% Similarity=0.026 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHH
Q 038936 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT----ADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWAS 434 (476)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 434 (476)
...+..+...+...|++++|.+.|+++.+ ..|+ ...+..++.+|...|++++|++.++++ ...| +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34455555555666666666666666553 2333 455666666777777777777777664 2233 5667788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 435 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
++.++...|++++|...++++++++|+++.++..++.+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 8888899999999999999999999999988888887754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.83 E-value=4.3e-07 Score=78.52 Aligned_cols=144 Identities=8% Similarity=-0.038 Sum_probs=111.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCcHH----HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC----hhhHH
Q 038936 331 SLIAGYAQNGMPDKALEYFELLLKSGT-QPDHI----VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT----ADHYA 401 (476)
Q Consensus 331 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 401 (476)
..+..+...|++++|...+++..+... .|+.. .+..+...+...|++++|+..++++.....-.++ ..++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778999999999999999987432 22221 3335667778889999999999999974222233 23688
Q ss_pred HHHHHHHhcCChhhHHHHHhhCC-------C-CCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------chhH
Q 038936 402 CIVDLLARSGRFHEAEDVISKMP-------M-KPD-KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN------PATY 466 (476)
Q Consensus 402 ~l~~~~~~~g~~~~A~~~~~~~~-------~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 466 (476)
.++.+|...|++++|+..++++- . .+. ..++..++..|...|++++|+..+++++++.++. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999998862 1 222 3378899999999999999999999999976543 6688
Q ss_pred HHHHHhhh
Q 038936 467 VTMANIYA 474 (476)
Q Consensus 467 ~~l~~~y~ 474 (476)
..+|.+|.
T Consensus 240 ~~lg~~~~ 247 (293)
T 3u3w_A 240 YQRGECLR 247 (293)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88988875
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.2e-07 Score=80.36 Aligned_cols=169 Identities=15% Similarity=0.007 Sum_probs=92.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-----hhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHH
Q 038936 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA-----FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301 (476)
Q Consensus 227 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 301 (476)
.+...+..+...|++++|...+.+..+.....+. ..+..+...+...|+++.|...++...+......
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------- 149 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI------- 149 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS-------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC-------
Confidence 3445566777888888888888777664321111 0111222233344455555555444433211000
Q ss_pred HHHhhhcCChhhHHHHHccCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHH---cCC-CC--cHHHHHHHHHHHhc
Q 038936 302 VHMYSKCGNVENSKKVFNGMPRPD--LVSWTSLIAGYAQNGMPDKALEYFELLLK---SGT-QP--DHIVFVGVLTACTH 373 (476)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~-~~--~~~~~~~l~~~~~~ 373 (476)
.+. ..+++.+...|...|++++|+..+++..+ ... .+ ...++..++.+|..
T Consensus 150 ---------------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 150 ---------------------DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp ---------------------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence 001 23566666677777777777777777652 111 11 11466667777777
Q ss_pred cCchhhHHHHHHHHHHhc---CCCC-ChhhHHHHHHHHHhcCChhhH-HHHHhhC
Q 038936 374 AGLVDKGLQYFHSIKEKH---GLTY-TADHYACIVDLLARSGRFHEA-EDVISKM 423 (476)
Q Consensus 374 ~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 423 (476)
.|++++|++.++++.+.. +... -..++..++.+|.+.|++++| ...++++
T Consensus 209 ~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 777777777777766431 1111 145567777777777777777 5555553
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.82 E-value=9.8e-08 Score=74.55 Aligned_cols=129 Identities=12% Similarity=0.025 Sum_probs=100.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 406 (476)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.++++... .+.+...+..++.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 456677788889999999999999988864 345677888888899999999999999998875 34567788889999
Q ss_pred HHhcCChhhHHHHHhhC-CCCC-cHHHH--HHHHHHHHhcCChHHHHHHHHHHHHc
Q 038936 407 LARSGRFHEAEDVISKM-PMKP-DKFLW--ASLLGGCRIHGNLDLAKRAAEALFEI 458 (476)
Q Consensus 407 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 458 (476)
+...|++++|.+.++++ ...| +...+ ...+..+...|++++|+..+++..++
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999999999999886 3233 44444 33444467789999999999887663
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-05 Score=68.92 Aligned_cols=209 Identities=8% Similarity=0.013 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHhccCCCCCch-HHHHHHHHHHhhh--hhhhHHHHHHHHHHcCCCchHHHHHHHHHHH----HcC---CC
Q 038936 140 IEALDLYRMMQNFENSVSNKF-TLSSVLSAVSAIQ--CLRLGKEIHGYIMRTGFDSDEVVWSALSDMY----GKC---GS 209 (476)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 209 (476)
++|++++..+.. ..|+.. .++.--.++...+ +++++++.++.++... |-+..+|+.-...+ ... ++
T Consensus 50 ~~aL~~t~~~L~---~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGIN---ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp HHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHH---HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 456666655554 223222 2333333333344 4555555555554443 22333333333333 333 56
Q ss_pred HHHHHHHHHhhccc---chhhHHHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccc------HHH
Q 038936 210 INEARQIFDKMVDR---DVVSWTAMIGRYFQEGRRE--EGFALFSELIKSGIRPNAFTFAGVLNACADHAA------EEL 278 (476)
Q Consensus 210 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~ 278 (476)
+++++.+++.+.+. +..+|+.-.-.+.+.|.++ +++..+.++.+.. +-|...|+.-...+...+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 67777777776543 3445555555566666666 7777777777654 3344555544444444444 666
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhh-HHHHHccCCC------CChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038936 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN-SKKVFNGMPR------PDLVSWTSLIAGYAQNGMPDKALEYFEL 351 (476)
Q Consensus 279 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 351 (476)
+.+.+..++... +.+...++.+...+.+.|+... +..+..++.+ .++..+..+...|.+.|+.++|+++++.
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 666666666654 4555555555555555555332 3334444332 1333444455555555555555555555
Q ss_pred HHH
Q 038936 352 LLK 354 (476)
Q Consensus 352 ~~~ 354 (476)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.79 E-value=7.2e-08 Score=71.28 Aligned_cols=107 Identities=10% Similarity=0.062 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 406 (476)
..+...+..|.+.|++++|++.|++.++.. +.+...|..+..++...|++++|++.++++++. .+.+...|..++.+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHH
Confidence 356667778888888888888888888764 345667777888888888888888888888864 24456778888888
Q ss_pred HHhcCChhhHHHHHhhC-CCCC-cHHHHHHHH
Q 038936 407 LARSGRFHEAEDVISKM-PMKP-DKFLWASLL 436 (476)
Q Consensus 407 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 436 (476)
|...|++++|++.|+++ ...| +...+..+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 88888888888888875 4445 344444443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=5.9e-06 Score=71.61 Aligned_cols=227 Identities=10% Similarity=0.027 Sum_probs=135.3
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccc-cHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhc-C-ChhhHHHHH
Q 038936 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHA-AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC-G-NVENSKKVF 318 (476)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~ 318 (476)
++|+.++.+++..+ +-+...++.--..+...| .+++++.+++.+.... +.+..+++.-..++... + ++++++.++
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 34444444444432 122223333333333333 3555555555555443 33344444433333333 3 556666666
Q ss_pred ccCCCC---ChhhHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc-------hhhH
Q 038936 319 NGMPRP---DLVSWTSLIAGYAQNGMPD--------KALEYFELLLKSGTQPDHIVFVGVLTACTHAGL-------VDKG 380 (476)
Q Consensus 319 ~~~~~~---~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a 380 (476)
+++.+. |..+|+...-.+.+.|.++ ++++.++++++..+ -|...|+.....+.+.+. ++++
T Consensus 149 ~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eE 227 (349)
T 3q7a_A 149 HGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDE 227 (349)
T ss_dssp HHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHH
Confidence 666642 3445555444444444454 88999999988753 466777777777777665 6888
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh--------------------hhHHHHHhhC-CC-------CCcHHHH
Q 038936 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRF--------------------HEAEDVISKM-PM-------KPDKFLW 432 (476)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~-------~p~~~~~ 432 (476)
++.++++... .+-+...|..+-..+.+.|+. .+..++..++ .. .+.+..+
T Consensus 228 Le~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 228 LIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 8988888864 355677787777777777764 3344444444 21 2567788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH-HcCCCCchhHHHHHHhh
Q 038936 433 ASLLGGCRIHGNLDLAKRAAEALF-EIEPENPATYVTMANIY 473 (476)
Q Consensus 433 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~y 473 (476)
..++..|...|+.++|.++++.+. +.+|-...-|...+...
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~~ 347 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRREC 347 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHhh
Confidence 899999999999999999999987 68897777776655443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.4e-08 Score=73.18 Aligned_cols=104 Identities=12% Similarity=0.017 Sum_probs=60.8
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC----c----HHHHHH
Q 038936 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP----D----KFLWAS 434 (476)
Q Consensus 364 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~----~~~~~~ 434 (476)
+..++..+.+.|++++|++.|+++++. .|.+...|..++.+|.+.|++++|++.++++ ...| + ..+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 344455555555555555555555543 1233444555555555555555555555543 1111 1 235667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 038936 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 435 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
++.++...|++++|++.|+++++..| ++.....|.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l~ 123 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKKVK 123 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHHHH
Confidence 77788888999999999999888877 445554443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.77 E-value=3.5e-08 Score=75.27 Aligned_cols=103 Identities=9% Similarity=-0.028 Sum_probs=84.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHH
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 404 (476)
+...+..+...+.+.|++++|+..|+++.+.. +.+...|..+..++...|++++|++.|+++.+. .|.++..+..++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHH
Confidence 34567778888999999999999999999864 346678888899999999999999999999875 344677888999
Q ss_pred HHHHhcCChhhHHHHHhhC-CCCCcHH
Q 038936 405 DLLARSGRFHEAEDVISKM-PMKPDKF 430 (476)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~-~~~p~~~ 430 (476)
.+|.+.|++++|++.|+++ ...|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999986 4455554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=7.8e-08 Score=72.44 Aligned_cols=112 Identities=7% Similarity=-0.111 Sum_probs=79.4
Q ss_pred CcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHH
Q 038936 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLL 436 (476)
Q Consensus 359 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 436 (476)
.+...+..+...+...|++++|...|+++... .+.+...+..++.++...|++++|+..++++ ...| +...+..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34556666777777777777777777777764 2445666777777777788888887777775 2233 566777888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCC-----CchhHHHHHHh
Q 038936 437 GGCRIHGNLDLAKRAAEALFEIEPE-----NPATYVTMANI 472 (476)
Q Consensus 437 ~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~ 472 (476)
.++...|++++|+..+++++++.|+ +......+..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888877 55555555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.76 E-value=7.7e-08 Score=84.81 Aligned_cols=149 Identities=11% Similarity=0.001 Sum_probs=113.2
Q ss_pred cCChhhHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--------------HHHHHHHHHH
Q 038936 308 CGNVENSKKVFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD--------------HIVFVGVLTA 370 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 370 (476)
.+++++|...++...+ | +...+..+...|.+.|++++|+..|++.++...... ...+..+..+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666665543 2 355788888899999999999999999998643221 3678888888
Q ss_pred HhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHH
Q 038936 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 448 (476)
+.+.|++++|+..++++.+. .+.+...+..++.+|...|++++|+..|+++ ...| +...+..+..++...|++++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999988875 3456778888888888999999998888886 3444 566778888888888888888
Q ss_pred -HHHHHHHHHc
Q 038936 449 -KRAAEALFEI 458 (476)
Q Consensus 449 -~~~~~~~~~~ 458 (476)
...|+++++.
T Consensus 284 ~~~~~~~~~~~ 294 (336)
T 1p5q_A 284 EKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 5577777763
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.5e-08 Score=87.94 Aligned_cols=140 Identities=11% Similarity=-0.047 Sum_probs=84.4
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CC----------------hhhHHHHHH
Q 038936 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PD----------------LVSWTSLIA 334 (476)
Q Consensus 273 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----------------~~~~~~l~~ 334 (476)
.++++.|...++...+.. +.+...+..+...|.+.|++++|+..|++..+ |+ ...|..+..
T Consensus 126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 345555555444333321 22344556666666777777777777666552 22 256666666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 038936 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414 (476)
Q Consensus 335 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 414 (476)
+|.+.|++++|+..+++.++.. +.+...+..+..++...|++++|+..|+++.+. .+.+...+..+..++.+.|+.+
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776653 234556666666677777777777777776654 2334556666666666666666
Q ss_pred hH
Q 038936 415 EA 416 (476)
Q Consensus 415 ~A 416 (476)
+|
T Consensus 282 ~a 283 (336)
T 1p5q_A 282 AR 283 (336)
T ss_dssp HH
T ss_pred HH
Confidence 66
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3e-06 Score=73.12 Aligned_cols=193 Identities=10% Similarity=0.026 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcC--ChhhHHHHHccCCC---CChhhHHHHHHHHHhcCC-hHHHHHHH
Q 038936 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG--NVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGM-PDKALEYF 349 (476)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~A~~~~ 349 (476)
++.+..+++.+.... |.+..+++.-.-++...+ .+++++.+++.+.+ .|..+|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455666666666554 445555555555555555 36677777776664 455666666666667777 47888888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhcc--------------CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-----
Q 038936 350 ELLLKSGTQPDHIVFVGVLTACTHA--------------GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS----- 410 (476)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 410 (476)
+++++..+ -|...|+.....+... +.++++++.+.++... .|-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 88888653 3555555554444333 4578888888888864 355666776665555554
Q ss_pred ------CChhhHHHHHhhC-CCCCcHHHHHHHHHHH-----HhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 411 ------GRFHEAEDVISKM-PMKPDKFLWASLLGGC-----RIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 411 ------g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
+.++++++.++++ ...||. .|..+..+. ...|..++....+.++++++|....-|..|..-+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3467888888876 455654 333222222 2457888999999999999999998888876543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-08 Score=87.47 Aligned_cols=191 Identities=10% Similarity=-0.028 Sum_probs=133.5
Q ss_pred CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHH
Q 038936 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAG 335 (476)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~ 335 (476)
+...+..+...+...|++++|...++...+.. +.+...+..+..+|.+.|++++|...++++.+ .+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45667777888899999999999999999875 55788888999999999999999999998875 345688889999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 038936 336 YAQNGMPDKALEYFELLLKSGTQPDHI-VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414 (476)
Q Consensus 336 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 414 (476)
|...|++++|+..|++..+.+ |+.. .+...+....+ ..++... ...... ..+.+......+...+ .|+.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~-~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRW-NSIEER-RIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHH-HHHHHT-CCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHH-HHHHHH-HHhhhHHHHHHHHHHH--HHHHH
Confidence 999999999999999988743 3221 11111221111 1122222 222222 4555666655554443 68999
Q ss_pred hHHHHHhhC-CCCCcHH-HHHHHHHHHHhc-CChHHHHHHHHHHHHcC
Q 038936 415 EAEDVISKM-PMKPDKF-LWASLLGGCRIH-GNLDLAKRAAEALFEIE 459 (476)
Q Consensus 415 ~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 459 (476)
+|++.++++ ...|+.. ....+...+... +.+++|.++|+++.+..
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999885 5566544 334444444444 67889999999887744
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.8e-07 Score=75.58 Aligned_cols=117 Identities=8% Similarity=-0.053 Sum_probs=57.9
Q ss_pred HhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---------------HHHHH
Q 038936 304 MYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD---------------HIVFV 365 (476)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~ 365 (476)
.....|+++++.+.++.... .....+..+...+...|++++|+..|++..+...... ...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 34445666666666554332 1334566677777888888888888888877431111 13444
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 366 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
.+..++...|++++|+..++++.+. .+.+...+..++.+|...|++++|++.|++
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4445555555555555555555542 122334444444444444555554444444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.7e-07 Score=69.66 Aligned_cols=102 Identities=17% Similarity=0.054 Sum_probs=67.6
Q ss_pred HHHHHhccCchhhHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc----HHHHHHHHHH
Q 038936 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTA---DHYACIVDLLARSGRFHEAEDVISKM-PMKPD----KFLWASLLGG 438 (476)
Q Consensus 367 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~ 438 (476)
+...+...|++++|...|+++.... +.+. ..+..++.++.+.|++++|+..++++ ...|+ ...+..++.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 4455566677777777777666542 2222 35666677777777777777777664 22232 4566777777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 038936 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
+...|++++|...++++++..|+++.+...+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 88888888888888888888888776655444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=5.5e-08 Score=71.35 Aligned_cols=98 Identities=12% Similarity=0.022 Sum_probs=71.1
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHh
Q 038936 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRI 441 (476)
Q Consensus 364 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 441 (476)
+..+...+.+.|++++|+..++++.+. .+.+...+..++.++...|++++|+..|+++ ...| +...+..++.++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344566677788888888888888764 3446677778888888888888888888875 3444 56678888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCc
Q 038936 442 HGNLDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 442 ~g~~~~A~~~~~~~~~~~p~~~ 463 (476)
.|++++|+..++++++++|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8999999999999999988764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-07 Score=72.52 Aligned_cols=109 Identities=10% Similarity=0.031 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHH
Q 038936 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGC 439 (476)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 439 (476)
..+..+...+...|++++|...++++... .+.+...+..++.++...|++++|++.++++ ...| +...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45677888889999999999999999975 3556788999999999999999999999986 3334 677889999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 440 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
...|++++|...++++++++|+++.++..++.+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999998888655544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-06 Score=73.52 Aligned_cols=180 Identities=8% Similarity=-0.073 Sum_probs=120.4
Q ss_pred hcCCHHHHHHHHHhcC---CCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHHcCCCCC----------------
Q 038936 7 NQRRLKEALQILHQIS---HPSPSIYSSL-------IQFCRQNRALEEGKKVHSHLKSSGFKPG---------------- 60 (476)
Q Consensus 7 ~~~~~~~A~~~~~~~~---~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------- 60 (476)
..+++++|.+.|.++. +.....|..+ ..++.+.++..++...+..... +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4789999999999985 6777888888 5777777777777776666554 2221
Q ss_pred ------hhhHHHHHHHHHhcCChHHHHHHHHHccc--ccchHHHHHHHHHHhcCCHHHHHHHHhcCCCC-C----cchHH
Q 038936 61 ------VFISNCLLDMYAKCGNISDAQTLFDEMQE--RDVCSYNTMISGFTKGGSLEQARNLFDEMPQR-D----NFSWT 127 (476)
Q Consensus 61 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~----~~~~~ 127 (476)
......+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+..... + ...+.
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~ 175 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGV 175 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHH
Confidence 12233456677788888999888888764 33235556666778888888888888766543 2 23566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhccCCCCC--chHHHHHHHHHHhhhhhhhHHHHHHHHHHcC
Q 038936 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSN--KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189 (476)
Q Consensus 128 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 189 (476)
.+..++...|++++|++.|++... ....|. .........++.+.|+.++|...|+++....
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 677788888888888888888764 222132 2234444455556666666666666665543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.70 E-value=6.5e-08 Score=72.90 Aligned_cols=106 Identities=19% Similarity=0.026 Sum_probs=72.9
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHhcCCCC-----C-----hhhHHHHHHHHHhcCChhhHHHHHhhC-CC-------CC
Q 038936 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTY-----T-----ADHYACIVDLLARSGRFHEAEDVISKM-PM-------KP 427 (476)
Q Consensus 366 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p 427 (476)
.....+.+.|++++|+..|+++++-.+..| + ...|..++.++.+.|++++|+..++++ .. .|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 344445555566666666655554311110 1 126777777777777777777777664 33 67
Q ss_pred c-HHHH----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 038936 428 D-KFLW----ASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMAN 471 (476)
Q Consensus 428 ~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 471 (476)
+ ...| ...+.++...|++++|+..|+++++++|++......+..
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 4 4578 899999999999999999999999999998877655543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-07 Score=70.81 Aligned_cols=108 Identities=9% Similarity=0.008 Sum_probs=65.1
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCC----Cc----HHHHH
Q 038936 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMK----PD----KFLWA 433 (476)
Q Consensus 363 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~----p~----~~~~~ 433 (476)
.+..++..+...|++++|...++++... .+.+...+..++.++...|++++|...++++ ... ++ ...+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444455555555555555555555543 1334445555555555666666666555553 111 11 45667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 434 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
.++.++...|++++|...++++++..| ++.....++.++
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 777778888888888888888888877 566666666554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-07 Score=68.18 Aligned_cols=100 Identities=15% Similarity=0.043 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC---cHHHHHHHHH
Q 038936 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP---DKFLWASLLG 437 (476)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~ 437 (476)
..+..+...+...|++++|...++++.+. .+.+...+..++.++...|++++|.+.++++ ...| +...+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34555666677777777777777777654 2345566777777777778888887777775 3333 4667888888
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCCc
Q 038936 438 GCRIH-GNLDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 438 ~~~~~-g~~~~A~~~~~~~~~~~p~~~ 463 (476)
++... |++++|++.++++++..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 999999999999998888764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-07 Score=74.15 Aligned_cols=77 Identities=18% Similarity=0.150 Sum_probs=61.3
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-hhHHHHHHh
Q 038936 396 TADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP-ATYVTMANI 472 (476)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~ 472 (476)
+...|..++.+|.+.|++++|+..++++ ...| +...|..++.++...|++++|+..|+++++++|+++ .+...|..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456778888888888888888888885 3344 567888888889999999999999999999999887 556666554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-07 Score=81.70 Aligned_cols=93 Identities=10% Similarity=-0.043 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHH
Q 038936 160 FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYF 236 (476)
Q Consensus 160 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~ 236 (476)
..+..+...+...|+++.|...++..++.. +.+...+..+..+|.+.|++++|+..+++..+. +...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344444455555555555555555555443 234445555555555555555555555555332 2334445555555
Q ss_pred hcCChhHHHHHHHHHHH
Q 038936 237 QEGRREEGFALFSELIK 253 (476)
Q Consensus 237 ~~~~~~~a~~~~~~~~~ 253 (476)
..|++++|...|.+..+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=4.1e-07 Score=67.53 Aligned_cols=117 Identities=10% Similarity=0.000 Sum_probs=78.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 038936 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405 (476)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (476)
...+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|.+.++++... .+.+...+..++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHH
Confidence 3455666677777777777777777777653 235566667777777777788887777777764 2344666777777
Q ss_pred HHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCCh
Q 038936 406 LLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNL 445 (476)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 445 (476)
++.+.|++++|.+.++++ ...| +...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 777778888887777775 2233 455666666666666654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.4e-07 Score=76.47 Aligned_cols=62 Identities=11% Similarity=-0.019 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCc--HHHHHHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 329 WTSLIAGYAQNGMPDKALEYFELLLKSG---TQPD--HIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 329 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
+..+...+...|++++|...+++..+.. ..+. ..++..+...+...|++++|.+.+++..+.
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3444455555555555555555544210 0111 123455556666666666666666665543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1e-07 Score=72.73 Aligned_cols=93 Identities=18% Similarity=0.117 Sum_probs=51.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (476)
.+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|+..|+++... .+.+...+..++.+|
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHH
Confidence 34445555556666666666666655543 224445555555566666666666666666543 133444555566666
Q ss_pred HhcCChhhHHHHHhhC
Q 038936 408 ARSGRFHEAEDVISKM 423 (476)
Q Consensus 408 ~~~g~~~~A~~~~~~~ 423 (476)
...|++++|++.|+++
T Consensus 100 ~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 100 LQXGELAEAESGLFLA 115 (148)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 6666666666666554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=4.5e-07 Score=67.61 Aligned_cols=115 Identities=12% Similarity=-0.009 Sum_probs=78.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 038936 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405 (476)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (476)
...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|.+.++++.+. .+.+...+..++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 4456667777777888888888888777653 235566777777777788888888888777764 2445667777777
Q ss_pred HHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcC
Q 038936 406 LLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHG 443 (476)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 443 (476)
++.+.|++++|.+.|+++ ...| +...+..+...+...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 888888888888887775 3333 3445555555555444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.65 E-value=7e-07 Score=65.62 Aligned_cols=112 Identities=19% Similarity=0.286 Sum_probs=73.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 038936 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405 (476)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (476)
...+..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|..+++++... .+.+...+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 3456666677777777777777777777653 234556666777777777777777777777754 2445666777777
Q ss_pred HHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHH
Q 038936 406 LLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCR 440 (476)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 440 (476)
++...|++++|.+.++++ ...| +...+..+...+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 777777777777777775 2223 3445555554443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.7e-07 Score=66.95 Aligned_cols=105 Identities=10% Similarity=-0.022 Sum_probs=71.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC-C----hhhHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY-T----ADHYAC 402 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~~~ 402 (476)
.+..++..+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.++++++...-.+ + ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667777888888888888888887753 23456677777788888888888888887775311111 1 235666
Q ss_pred HHHHHHhcCChhhHHHHHhhC-CCCCcHHHHH
Q 038936 403 IVDLLARSGRFHEAEDVISKM-PMKPDKFLWA 433 (476)
Q Consensus 403 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 433 (476)
++.++...|++++|++.|++. ...|++....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHH
Confidence 777788888888888888774 3445554443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=8.7e-08 Score=77.48 Aligned_cols=139 Identities=9% Similarity=-0.013 Sum_probs=83.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC--------------hhhH
Q 038936 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT--------------ADHY 400 (476)
Q Consensus 335 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~ 400 (476)
.....|+++++.+.++.-.+.. ......+..+...+...|++++|++.|+++.......|+ ...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3344455555555554322210 112334556666777777777777777777753222221 1567
Q ss_pred HHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 401 ACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 401 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
..++.+|.+.|++++|+..++++ ...| +...+..++.++...|++++|+..|+++++++|+++.++..++.++.
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 77777777777777777777775 2233 55667777777777777777777777777777777777777776653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.7e-07 Score=71.61 Aligned_cols=134 Identities=19% Similarity=0.079 Sum_probs=95.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC----hh
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-PD----HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT----AD 398 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 398 (476)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.++++.+.....++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 5566777777888888888888777653110 11 136677778888888899888888887753211111 44
Q ss_pred hHHHHHHHHHhcCChhhHHHHHhhC-------CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038936 399 HYACIVDLLARSGRFHEAEDVISKM-------PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 399 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 461 (476)
.+..++.++...|++++|.+.+++. ...+ ....+..++..+...|++++|...+++++++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 5677888888999999998888775 1111 2346778888889999999999999999986543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-07 Score=82.70 Aligned_cols=133 Identities=13% Similarity=0.089 Sum_probs=74.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH------------------HHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI------------------VFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
.+..+...+.+.|++++|+..|++.++. .|+.. .|..+..++.+.|++++|+..++++++
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555666677777888888888777764 34433 778888899999999999999999987
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCCch
Q 038936 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGGC-RIHGNLDLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 390 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~~~~ 464 (476)
. .+.+...+..++.+|...|++++|+..|+++ ...|+ ...+..+.... ...+..+++...|+++++..|+++.
T Consensus 259 ~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 259 E--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp H--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 5 3456788999999999999999999999996 55564 34555555442 3447788899999999999998764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.3e-06 Score=80.66 Aligned_cols=162 Identities=9% Similarity=-0.024 Sum_probs=129.9
Q ss_pred hhhHHHHHccCCC--C-ChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC--
Q 038936 311 VENSKKVFNGMPR--P-DLVSWTSLIAGYAQNGM----------PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG-- 375 (476)
Q Consensus 311 ~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 375 (476)
.++|++.++.+.. | +..+|+.-..++...|+ ++++++.++++.+.. +-+..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 3456777776664 3 34567666666666666 899999999999875 346778888888888888
Q ss_pred chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-ChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhc----------
Q 038936 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG-RFHEAEDVISKM-PMKP-DKFLWASLLGGCRIH---------- 442 (476)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---------- 442 (476)
+++++++.++++.+. -+-+...|+.-..++.+.| .++++++.++++ ...| +...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 679999999999986 3557888888888899999 899999999986 4455 778888888777663
Q ss_pred ----CChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 443 ----GNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 443 ----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
+.++++++.+++++..+|+|..+|..+.+++..
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 567999999999999999999999999998864
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.59 E-value=4.7e-07 Score=83.46 Aligned_cols=148 Identities=9% Similarity=0.009 Sum_probs=96.2
Q ss_pred cCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--------------HHHHHHHHHH
Q 038936 308 CGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD--------------HIVFVGVLTA 370 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 370 (476)
.+++++|...|+...+ .....|..+...+.+.|++++|+..|++.++...... ...|..+..+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3445556555554443 2344677788888889999999999998887532211 3566777777
Q ss_pred HhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHH
Q 038936 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 448 (476)
+.+.|++++|+..++++++. .+.+...+..++.+|...|++++|+..|+++ ...| +...+..+..++...|+.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888777764 2445666777777777777777777777775 4445 344666677667777776666
Q ss_pred H-HHHHHHHH
Q 038936 449 K-RAAEALFE 457 (476)
Q Consensus 449 ~-~~~~~~~~ 457 (476)
. ..+++++.
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 5 34444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.6e-08 Score=70.52 Aligned_cols=93 Identities=14% Similarity=0.148 Sum_probs=55.6
Q ss_pred cCchhhHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHH
Q 038936 374 AGLVDKGLQYFHSIKEKHG--LTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAK 449 (476)
Q Consensus 374 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 449 (476)
.|++++|+..|+++.+. + .+.+...+..++.+|.+.|++++|++.|+++ ...| +...+..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45666666666666642 1 1223455666666666677777777666664 2233 4556666777777777777777
Q ss_pred HHHHHHHHcCCCCchhHH
Q 038936 450 RAAEALFEIEPENPATYV 467 (476)
Q Consensus 450 ~~~~~~~~~~p~~~~~~~ 467 (476)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 777777777777665443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=0.00013 Score=63.20 Aligned_cols=170 Identities=8% Similarity=-0.020 Sum_probs=97.1
Q ss_pred hcCChhHHHHHHHHHHhccCCCCCc-hHHHHHHHHHHhhh-hhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcC-C-CH
Q 038936 135 RYNQPIEALDLYRMMQNFENSVSNK-FTLSSVLSAVSAIQ-CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC-G-SI 210 (476)
Q Consensus 135 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~ 210 (476)
..+..++|+++++.+.. ..|+. ..++.--..+...+ .++++.++++.++... +-+..+|+.-...+... + ++
T Consensus 66 ~~e~se~AL~lt~~~L~---~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 66 KEEKSERALELTEIIVR---MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp TTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred hCCCCHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 33444566666666664 23332 23344444444445 3666666666666554 44555666655555554 5 67
Q ss_pred HHHHHHHHhhcccch---hhHHHHHHHHHhcCChh--------HHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccc----
Q 038936 211 NEARQIFDKMVDRDV---VSWTAMIGRYFQEGRRE--------EGFALFSELIKSGIRPNAFTFAGVLNACADHAA---- 275 (476)
Q Consensus 211 ~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 275 (476)
++++++++.+.+.++ .+|+...-.+.+.|.++ ++++.+.++.+.. +-|...|+.....+.+.++
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 778888887766443 44554444444444455 7777777777764 3455566655555555554
Q ss_pred ---HHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCC
Q 038936 276 ---EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310 (476)
Q Consensus 276 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 310 (476)
++++.+.+..+.... +.|...++.+-..+.+.|+
T Consensus 221 ~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 566677776666664 5555566555555554443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.1e-07 Score=72.64 Aligned_cols=93 Identities=10% Similarity=0.042 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HhccCch--hhHHHHHHHHHHhcCCCCChhhHHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA-CTHAGLV--DKGLQYFHSIKEKHGLTYTADHYACI 403 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l 403 (476)
..|..+...|...|++++|+..|++..+.. +.+...+..+..+ +...|++ ++|...++++... .+.+...+..+
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 121 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALAL--DSNEITALMLL 121 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 344444555555555555555555554432 1233344444444 4445554 5555555555543 12234444555
Q ss_pred HHHHHhcCChhhHHHHHhh
Q 038936 404 VDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 404 ~~~~~~~g~~~~A~~~~~~ 422 (476)
+.+|...|++++|...+++
T Consensus 122 a~~~~~~g~~~~A~~~~~~ 140 (177)
T 2e2e_A 122 ASDAFMQANYAQAIELWQK 140 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHH
Confidence 5555555555555555554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.4e-06 Score=77.43 Aligned_cols=207 Identities=9% Similarity=-0.028 Sum_probs=114.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCCh
Q 038936 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311 (476)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (476)
...+.+.|++++|.+.|.++.+.......... ..+........ ....+..++..|...|++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~-----------~~~al~~l~~~y~~~~~~ 71 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAA--------GASVDDKRRNE-----------QETSILELGQLYVTMGAK 71 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSS--------SSSBCSHHHHH-----------HHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHH--------HHHHHHHHhhh-----------HHHHHHHHHHHHHHCCCH
Confidence 45567788888888888888775422211000 00000000000 001123455555566666
Q ss_pred hhHHHHHccCCC-----CCh----hhHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCc-HHHHHHHHHHHhccCch
Q 038936 312 ENSKKVFNGMPR-----PDL----VSWTSLIAGYAQNGMPDKALEYFELLLK----SGTQPD-HIVFVGVLTACTHAGLV 377 (476)
Q Consensus 312 ~~a~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~ 377 (476)
++|.+.+..+.+ ++. .+.+.+...+...|+++.|+.++++... .+..+. ..++..++..+...|++
T Consensus 72 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (434)
T 4b4t_Q 72 DKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQY 151 (434)
T ss_dssp HHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccCh
Confidence 666655555442 111 1223333334456677777777766543 222222 34566677777788888
Q ss_pred hhHHHHHHHHHHhcCCCC----ChhhHHHHHHHHHhcCChhhHHHHHhhC-------CCCCc--HHHHHHHHHHHHhcCC
Q 038936 378 DKGLQYFHSIKEKHGLTY----TADHYACIVDLLARSGRFHEAEDVISKM-------PMKPD--KFLWASLLGGCRIHGN 444 (476)
Q Consensus 378 ~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~ 444 (476)
++|..+++++........ ...++..++..|...|++++|...++++ ..+|. ...+..++..+...|+
T Consensus 152 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 231 (434)
T 4b4t_Q 152 KDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD 231 (434)
T ss_dssp HHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh
Confidence 888888777765422221 2345667777888888888888777664 11111 2345555556666788
Q ss_pred hHHHHHHHHHHHH
Q 038936 445 LDLAKRAAEALFE 457 (476)
Q Consensus 445 ~~~A~~~~~~~~~ 457 (476)
+++|...+.++++
T Consensus 232 y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 232 YKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887776
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-06 Score=65.63 Aligned_cols=104 Identities=17% Similarity=0.075 Sum_probs=77.4
Q ss_pred HHccCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCC
Q 038936 317 VFNGMPRPD---LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393 (476)
Q Consensus 317 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 393 (476)
.|+++.+.+ ...+..+...+.+.|++++|+..|++....+ +.+...+..+..++...|++++|+..|+++... .
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 82 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM--D 82 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--C
Confidence 344444432 3355566777888889999999998888764 345667777888888889999999999888875 2
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 394 TYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 394 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
+.++..+..++.+|...|++++|++.|+++
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445667888888899999999999888875
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-06 Score=64.50 Aligned_cols=94 Identities=10% Similarity=-0.017 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 406 (476)
..|..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|+..++++.+. .+.+...+..++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 456667777888888888888888888764 345677888888888888888888888888864 24456778888888
Q ss_pred HHhcCChhhHHHHHhhC
Q 038936 407 LARSGRFHEAEDVISKM 423 (476)
Q Consensus 407 ~~~~g~~~~A~~~~~~~ 423 (476)
+...|++++|++.|+++
T Consensus 82 ~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 82 QIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHH
Confidence 88888888888888875
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-05 Score=73.53 Aligned_cols=163 Identities=9% Similarity=-0.093 Sum_probs=91.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHh----hHHHHHHHHhccccHHHHHHHHHHHHHh----CCC-Cchhh
Q 038936 228 WTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAF----TFAGVLNACADHAAEELGKQVHGYMTRI----GYD-PYSFA 297 (476)
Q Consensus 228 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 297 (476)
+..++..|...|++++|.+.+.++.+.- ..++.. ..+.+-..+...|+.+.+..++...... +.. ....+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3444555555555555555555543310 011111 1111222233455666666666554432 111 12345
Q ss_pred HHHHHHHhhhcCChhhHHHHHccCCC--------C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--C-CC-c--HH
Q 038936 298 ASALVHMYSKCGNVENSKKVFNGMPR--------P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSG--T-QP-D--HI 362 (476)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~--------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-~~-~--~~ 362 (476)
+..+...|...|++++|..+++.+.. + ...++..++..|...|++++|..++++..... + .| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 55666777777777777776665431 1 13467777888888888888888888765421 1 12 1 23
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 363 VFVGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 363 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
.+..++..+...|++++|...|.+..+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4566667778888888888888777653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.50 E-value=8.5e-07 Score=79.05 Aligned_cols=79 Identities=15% Similarity=0.086 Sum_probs=66.6
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 396 TADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
+...|..++.+|.+.|++++|++.++++ ...| +...|..++.++...|++++|+..|+++++++|+++.++..|+.++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4566788888899999999999998885 4455 5678888888999999999999999999999999998888888776
Q ss_pred h
Q 038936 474 A 474 (476)
Q Consensus 474 ~ 474 (476)
.
T Consensus 352 ~ 352 (370)
T 1ihg_A 352 Q 352 (370)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.9e-06 Score=67.05 Aligned_cols=95 Identities=11% Similarity=-0.007 Sum_probs=66.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 038936 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405 (476)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (476)
...+..+...+...|++++|+..|++.++.. +.+...+..+..++...|++++|+..++++.+. .+.+...+..++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3456666777777777777777777777753 235566777777777777777777777777764 2345666777777
Q ss_pred HHHhcCChhhHHHHHhhC
Q 038936 406 LLARSGRFHEAEDVISKM 423 (476)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~ 423 (476)
+|.+.|++++|++.|+++
T Consensus 88 ~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 777777777777777775
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.7e-06 Score=60.91 Aligned_cols=108 Identities=16% Similarity=0.095 Sum_probs=83.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 038936 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405 (476)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (476)
...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...++++.+. .+.+...+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 4456777888888999999999999988764 335677778888888899999999999988875 2445777888889
Q ss_pred HHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHH
Q 038936 406 LLARSGRFHEAEDVISKM-PMKP-DKFLWASLL 436 (476)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 436 (476)
++...|++++|.+.++++ ...| +...+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999885 4445 344444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-06 Score=64.88 Aligned_cols=111 Identities=12% Similarity=0.014 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCC-CCC----hhhHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL-TYT----ADHYA 401 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~ 401 (476)
..+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|...++++...... .++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456667777888888888888888887764 345667777778888888888888888887764211 111 56677
Q ss_pred HHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHHHHHHH
Q 038936 402 CIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLLGG 438 (476)
Q Consensus 402 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 438 (476)
.++.++.+.|++++|.+.|+++ ...|+...+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7888888888888888888875 344555555544443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1e-06 Score=60.65 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=66.3
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 396 TADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
+...+..++..+...|++++|++.++++ ...| +...+..++.++...|++++|+..++++++++|+++.++..++.+|
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456677788888888888888888875 2233 5668888999999999999999999999999999999999999987
Q ss_pred hc
Q 038936 474 AS 475 (476)
Q Consensus 474 ~~ 475 (476)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.8e-05 Score=68.22 Aligned_cols=158 Identities=14% Similarity=0.100 Sum_probs=119.1
Q ss_pred hhhHHHHHccCCC---CChhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc-hhhHHHHH
Q 038936 311 VENSKKVFNGMPR---PDLVSWTSLIAGYAQNGM--PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL-VDKGLQYF 384 (476)
Q Consensus 311 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~ 384 (476)
+++++.+++.+.. .+..+|+.-...+...++ +++++.+++++.+.. +-|...|+.-..++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4566666666653 466788887777777774 899999999999976 3477777777777777787 58999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhc--------------CChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhc------
Q 038936 385 HSIKEKHGLTYTADHYACIVDLLARS--------------GRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIH------ 442 (476)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------ 442 (476)
.++.+. .+-+...|+....++.+. +.++++++.++++ ...| |...|+.+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999985 356777788777777665 4577888888885 3344 777887666666555
Q ss_pred -----CChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 038936 443 -----GNLDLAKRAAEALFEIEPENPATYVTMAN 471 (476)
Q Consensus 443 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 471 (476)
+.++++++.++++++++|++..++..++.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~ 280 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIIL 280 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHH
Confidence 35789999999999999999766655553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.8e-06 Score=60.95 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=69.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC--ChhhHHH
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY--TADHYAC 402 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ 402 (476)
+...+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|.+.++++.+. .+. +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHH
Confidence 34456667777778888888888888877754 335566777777777888888888888887754 233 5667777
Q ss_pred HHHHHHhc-CChhhHHHHHhhC
Q 038936 403 IVDLLARS-GRFHEAEDVISKM 423 (476)
Q Consensus 403 l~~~~~~~-g~~~~A~~~~~~~ 423 (476)
++.++.+. |++++|.+.++++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 88888888 8888888887775
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.40 E-value=9.5e-07 Score=77.85 Aligned_cols=109 Identities=10% Similarity=-0.033 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCCh------------------hhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA------------------DHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
..+..+...+.+.|++++|+..|+++... .|+. ..|..++.+|.+.|++++|+..++++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34667788899999999999999998864 3433 27888999999999999999999986
Q ss_pred -CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 424 -PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 424 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
...| +...|..++.+|...|++++|+..|+++++++|+++.++..|+.+.
T Consensus 257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4444 6779999999999999999999999999999999999999988764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.39 E-value=6.8e-06 Score=61.53 Aligned_cols=97 Identities=6% Similarity=-0.054 Sum_probs=72.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHH
Q 038936 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403 (476)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 403 (476)
.+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++++... .+.+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHH
Confidence 345667777777888888888888888877754 334567777777788888888888888888764 24456677788
Q ss_pred HHHHHhcCChhhHHHHHhhC
Q 038936 404 VDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 404 ~~~~~~~g~~~~A~~~~~~~ 423 (476)
+.++...|++++|+..|+++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 88888888888888888775
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=2e-06 Score=62.84 Aligned_cols=98 Identities=6% Similarity=-0.111 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (476)
.+..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|+..++++.+. .+.+...+..++.+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 35556677888888888888888888854 235667777888888888888888888888864 244566788888888
Q ss_pred HhcCChhhHHHHHhhC-CCCCc
Q 038936 408 ARSGRFHEAEDVISKM-PMKPD 428 (476)
Q Consensus 408 ~~~g~~~~A~~~~~~~-~~~p~ 428 (476)
.+.|++++|+..++++ ...|+
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 8888888888888875 44443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.39 E-value=4.8e-07 Score=83.78 Aligned_cols=118 Identities=11% Similarity=0.065 Sum_probs=68.2
Q ss_pred HHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCch
Q 038936 301 LVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377 (476)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 377 (476)
+...+.+.|++++|...|++..+ .+...|..+..+|.+.|++++|++.+++..+.. +.+...+..+..++...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 33455666677777776666553 234566666666777777777777777766643 22445566666666667777
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCChhhHHHHHh
Q 038936 378 DKGLQYFHSIKEKHGLTYTADHYACIVDL--LARSGRFHEAEDVIS 421 (476)
Q Consensus 378 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 421 (476)
++|.+.++++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777666542 2233344444444 666666666666666
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=5.9e-07 Score=67.54 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=54.3
Q ss_pred CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh----------hhHHHHHhhC-CCCC-cHHHHHHHHHHHHhc
Q 038936 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF----------HEAEDVISKM-PMKP-DKFLWASLLGGCRIH 442 (476)
Q Consensus 375 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 442 (476)
+.+++|++.+++..+. .|.+...|..++.++...+++ ++|+..|+++ .+.| +...|..++.+|...
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3444444444444432 133444444444444444433 3555555553 3333 344555566665554
Q ss_pred -----------CChHHHHHHHHHHHHcCCCCchhHHHHH
Q 038936 443 -----------GNLDLAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 443 -----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
|++++|++.|+++++++|+++.....+-
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5899999999999999999876655543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=7.5e-06 Score=62.17 Aligned_cols=108 Identities=14% Similarity=0.043 Sum_probs=81.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhH
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD----HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 400 (476)
+...+..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|+..++++... .+.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHH
Confidence 4566777888888889999999999888874 355 567777888888889999999998888865 24456778
Q ss_pred HHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHH
Q 038936 401 ACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLL 436 (476)
Q Consensus 401 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 436 (476)
..++.++...|++++|.+.|+++ ...| +...+..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 88888889999999999888885 3334 344444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.34 E-value=3e-06 Score=78.44 Aligned_cols=117 Identities=14% Similarity=0.048 Sum_probs=52.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 038936 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414 (476)
Q Consensus 335 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 414 (476)
.+.+.|++++|++.+++..+.. +.+...+..+..++.+.|++++|++.++++.+. .+.+...+..++.+|.+.|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 3445555555555555555532 123445555555555555555555555555542 2233444555555555555555
Q ss_pred hHHHHHhhC-CCCC-cHHHHHHHHHH--HHhcCChHHHHHHHHH
Q 038936 415 EAEDVISKM-PMKP-DKFLWASLLGG--CRIHGNLDLAKRAAEA 454 (476)
Q Consensus 415 ~A~~~~~~~-~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 454 (476)
+|++.++++ ...| +...+..+..+ +...|++++|++.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 555555543 1122 12223333333 4444555555555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.33 E-value=4.1e-06 Score=77.16 Aligned_cols=126 Identities=13% Similarity=0.047 Sum_probs=89.8
Q ss_pred hhhHHHHHHHhhhcCChhhHHHHHccCCC--CC----------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 295 SFAASALVHMYSKCGNVENSKKVFNGMPR--PD----------------LVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356 (476)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 356 (476)
...+..+...+.+.|++++|...|+++.+ |+ ...|..+..+|.+.|++++|+..+++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 45566777778888888888888887663 32 3677778888888888888888888888764
Q ss_pred CCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH-HHhhC
Q 038936 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED-VISKM 423 (476)
Q Consensus 357 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~ 423 (476)
+.+...|..+..+|...|++++|+..|+++.+. .+.+...+..+..++.+.|+.++|.+ .+.+|
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335667777888888888888888888888753 23355667778888888887777664 44444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.4e-06 Score=61.26 Aligned_cols=75 Identities=9% Similarity=0.049 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------chhHHHHH
Q 038936 399 HYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN------PATYVTMA 470 (476)
Q Consensus 399 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~ 470 (476)
.+..++..+.+.|++++|++.++++ ...| +...+..++.++...|++++|+..++++++++|++ ..++..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 85 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLE 85 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 3444444455555555555555443 1122 34445555555555555555555555555555555 44444444
Q ss_pred Hhh
Q 038936 471 NIY 473 (476)
Q Consensus 471 ~~y 473 (476)
.++
T Consensus 86 ~~~ 88 (111)
T 2l6j_A 86 LAQ 88 (111)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.28 E-value=6.1e-06 Score=61.02 Aligned_cols=92 Identities=12% Similarity=0.006 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC---hhhHHH
Q 038936 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH---IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT---ADHYAC 402 (476)
Q Consensus 329 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ 402 (476)
+..+...+...|++++|+..|+++.+... .+. ..+..+..++...|++++|...++++.... +.+ ...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHH
Confidence 34456667788888888888888877532 122 366667777888888888888888887652 223 456777
Q ss_pred HHHHHHhcCChhhHHHHHhhC
Q 038936 403 IVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 403 l~~~~~~~g~~~~A~~~~~~~ 423 (476)
++.++.+.|++++|...|+++
T Consensus 82 la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 888888888888888888775
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.5e-06 Score=63.21 Aligned_cols=83 Identities=16% Similarity=0.243 Sum_probs=51.5
Q ss_pred cCChHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH
Q 038936 339 NGMPDKALEYFELLLKSGT--QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416 (476)
Q Consensus 339 ~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 416 (476)
.|++++|+..|++.++.+. +.+...+..+..++...|++++|+..++++.+. .|.+...+..++.++.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 4666777777777766431 123345666666777777777777777777754 234456666777777777777777
Q ss_pred HHHHhhC
Q 038936 417 EDVISKM 423 (476)
Q Consensus 417 ~~~~~~~ 423 (476)
+..++++
T Consensus 81 ~~~~~~a 87 (117)
T 3k9i_A 81 VELLLKI 87 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777664
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.25 E-value=4e-06 Score=64.78 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=62.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCC-cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC----Chh
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSG----TQP-DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY----TAD 398 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~ 398 (476)
++..+...+...|++++|...+++..+.. ..+ ....+..+...+...|++++|.+.+++..+...-.. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 55666677777777777777777765421 111 133566677777788888888888877764321111 134
Q ss_pred hHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 399 HYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 399 ~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
.+..++..+...|++++|.+.+++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5667778888888888888877763
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.7e-05 Score=59.36 Aligned_cols=120 Identities=13% Similarity=-0.020 Sum_probs=97.1
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhh
Q 038936 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR----SGRFHE 415 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 415 (476)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+. -++.....|+..|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999987 34433 777788888899999999999874 356778889999988 899999
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 038936 416 AEDVISKMPMKPDKFLWASLLGGCRI----HGNLDLAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 416 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
|.+.|++.-...++..+..+...|.. .+++++|...|+++.+... +.+...|+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--~~A~~~l~ 136 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS--EDACGILN 136 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHC-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHh
Confidence 99999997434577888888888888 7999999999999999854 44555544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.2e-05 Score=62.24 Aligned_cols=100 Identities=7% Similarity=0.025 Sum_probs=74.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc--------CC---------CCcHHHHHHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKS--------GT---------QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
.+......+.+.|++++|+..|++.++. .. +.+...|..+..++.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4555666777777788777777777664 10 112356777888888999999999999988875
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcH
Q 038936 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPDK 429 (476)
Q Consensus 391 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 429 (476)
.+.+...|..++.+|...|++++|+..|+++ ...|+.
T Consensus 93 --~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 93 --EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred --CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 3556778888999999999999999998885 455643
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.16 E-value=9.8e-06 Score=74.53 Aligned_cols=124 Identities=9% Similarity=-0.059 Sum_probs=92.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcC---CCCc----HHHHHHHHHHHhccCchhhHHHHHHHHHHhc--CCC---C-ChhhHH
Q 038936 335 GYAQNGMPDKALEYFELLLKSG---TQPD----HIVFVGVLTACTHAGLVDKGLQYFHSIKEKH--GLT---Y-TADHYA 401 (476)
Q Consensus 335 ~~~~~~~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~---~-~~~~~~ 401 (476)
.+...|++++|+.++++.++.. +.|+ ..+++.|+.+|...|++++|..+++++++-. -+. | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567889999999888876531 2222 2468888899999999999999988876521 112 2 245578
Q ss_pred HHHHHHHhcCChhhHHHHHhhC---------CCCCcHH-HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038936 402 CIVDLLARSGRFHEAEDVISKM---------PMKPDKF-LWASLLGGCRIHGNLDLAKRAAEALFEI 458 (476)
Q Consensus 402 ~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 458 (476)
.|+.+|..+|++++|+.+++++ +..|+.. +...+..++...|.+++|+..|+++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988875 3445544 4566667777889999999999999873
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.16 E-value=9.6e-06 Score=58.58 Aligned_cols=65 Identities=15% Similarity=0.082 Sum_probs=31.7
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 396 TADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
+...+..++.+|...|++++|+..|+++ ...| +...|..++.++...|++++|...+++++++.|
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3344444455555555555555555443 1122 334445555555555555555555555555544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=5.5e-06 Score=59.32 Aligned_cols=94 Identities=10% Similarity=0.058 Sum_probs=67.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC-------hh
Q 038936 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT-------AD 398 (476)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~ 398 (476)
...+..+...+...|++++|+..|++.++.. +.+...+..+..++...|++++|++.++++.+. .|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY---TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCccHHHHHHH
Confidence 4456667777888888888888888887753 335667777777888888888888888888743 343 45
Q ss_pred hHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 399 HYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 399 ~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
.+..++.++...|++++|++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 5666777777777777777666655
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.8e-05 Score=70.43 Aligned_cols=122 Identities=10% Similarity=-0.018 Sum_probs=93.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc---------------CCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKS---------------GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 392 (476)
.+..+...+.+.|++++|+..|++.++. --+.+...|..+..++.+.|++++|++.++++.+.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 4667777888889999999888888761 01123457788888899999999999999999863
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHH
Q 038936 393 LTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRA 451 (476)
Q Consensus 393 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 451 (476)
.+.+...+..++.+|...|++++|++.|+++ ...| +...+..+...+...++.+++.+.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778889999999999999999999886 4444 566777777777777777766543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.08 E-value=2.9e-05 Score=58.50 Aligned_cols=96 Identities=17% Similarity=0.018 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------cH-----HHHHHHHHHHhccCchhhHHHHHHHHHHh----cC
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQP------DH-----IVFVGVLTACTHAGLVDKGLQYFHSIKEK----HG 392 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 392 (476)
.+......+.+.|++++|+..|++.++..... +. ..|..+..++.+.|++++|+..++++++. ..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34556677888899999999999888753220 22 37888889999999999999999999863 01
Q ss_pred -CCCChhhH----HHHHHHHHhcCChhhHHHHHhhC
Q 038936 393 -LTYTADHY----ACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 393 -~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
.|.+...| ...+.++...|++++|+..|+++
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 23356678 89999999999999999999986
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.5e-05 Score=71.86 Aligned_cols=99 Identities=12% Similarity=0.079 Sum_probs=79.8
Q ss_pred HHhccCchhhHHHHHHHHHHhcC--CCC----ChhhHHHHHHHHHhcCChhhHHHHHhhC---------CCCCcHH-HHH
Q 038936 370 ACTHAGLVDKGLQYFHSIKEKHG--LTY----TADHYACIVDLLARSGRFHEAEDVISKM---------PMKPDKF-LWA 433 (476)
Q Consensus 370 ~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~ 433 (476)
.+..+|++++|+.++++..+... +.| ...+++.|+.+|...|++++|..+++++ +..|+.. +++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35678999999999998876422 122 3456889999999999999999998875 3456544 789
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH-----cCCCCchhHHH
Q 038936 434 SLLGGCRIHGNLDLAKRAAEALFE-----IEPENPATYVT 468 (476)
Q Consensus 434 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 468 (476)
.++..|...|++++|+.+++++++ +.|++|.+-..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 437 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDL 437 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence 999999999999999999999997 67888776543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=2.5e-05 Score=70.55 Aligned_cols=96 Identities=11% Similarity=-0.022 Sum_probs=75.0
Q ss_pred ccCchhhHHHHHHHHHHhc--CCCC----ChhhHHHHHHHHHhcCChhhHHHHHhhC---------CCCCcHH-HHHHHH
Q 038936 373 HAGLVDKGLQYFHSIKEKH--GLTY----TADHYACIVDLLARSGRFHEAEDVISKM---------PMKPDKF-LWASLL 436 (476)
Q Consensus 373 ~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~l~ 436 (476)
..|++++|+.++++..+.. -+.| ...+++.|+.+|...|++++|+.+++++ +..|+.. +++.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578889999888877632 1222 2456788899999999999999888875 3456554 789999
Q ss_pred HHHHhcCChHHHHHHHHHHHH-----cCCCCchhHHH
Q 038936 437 GGCRIHGNLDLAKRAAEALFE-----IEPENPATYVT 468 (476)
Q Consensus 437 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 468 (476)
..|...|++++|+.+++++++ +.|++|.+-..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999999999998 67888766553
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=6.1e-05 Score=68.19 Aligned_cols=101 Identities=13% Similarity=0.005 Sum_probs=77.5
Q ss_pred HHHHhccCchhhHHHHHHHHHHhc--CCCC----ChhhHHHHHHHHHhcCChhhHHHHHhhC---------CCCCcHH-H
Q 038936 368 LTACTHAGLVDKGLQYFHSIKEKH--GLTY----TADHYACIVDLLARSGRFHEAEDVISKM---------PMKPDKF-L 431 (476)
Q Consensus 368 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~ 431 (476)
+..+..+|++++|++++++..+.. -+.| ...+++.++.+|...|++++|+.+++++ +..|+.. +
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444667788999999988887532 1222 2456788888999999999999888875 3456544 7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCchhHHH
Q 038936 432 WASLLGGCRIHGNLDLAKRAAEALFE-----IEPENPATYVT 468 (476)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 468 (476)
++.++..|...|++++|+.+++++++ +.|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 89999999999999999999999998 67888766544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.93 E-value=4.5e-05 Score=53.15 Aligned_cols=52 Identities=13% Similarity=0.200 Sum_probs=24.3
Q ss_pred HHHhccCchhhHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCChhhHHHHHhh
Q 038936 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTAD-HYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
..+...|++++|++.++++.+. .+.+.. .+..++.+|...|++++|++.|++
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 60 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444455555555555555443 122333 444444444455555555544444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.90 E-value=1.5e-05 Score=55.86 Aligned_cols=64 Identities=9% Similarity=-0.076 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 397 ADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
...+..++.+|.+.|++++|++.|+++ ...| +...|..++.++...|++++|+..+++++++.|
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 334444444444444444444444443 1122 233444444445555555555555555554443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=6.2e-05 Score=55.92 Aligned_cols=93 Identities=16% Similarity=0.040 Sum_probs=69.8
Q ss_pred CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---ChhhHHHHHhhC-CCC-C--cHHHHHHHHHHHHhcCChHH
Q 038936 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG---RFHEAEDVISKM-PMK-P--DKFLWASLLGGCRIHGNLDL 447 (476)
Q Consensus 375 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~ 447 (476)
+....+.+.|.+.... -+++..+...+++++.+.+ ++++++.+|++. ... | +...+..+.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~--~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 3445566666666543 2477888888888888888 566888888875 333 5 35567778888999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHH
Q 038936 448 AKRAAEALFEIEPENPATYVTM 469 (476)
Q Consensus 448 A~~~~~~~~~~~p~~~~~~~~l 469 (476)
|.+.++++++.+|+|..+....
T Consensus 90 A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999998776553
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00011 Score=51.62 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 038936 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 427 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
+....+..++.++.+.|+++.|...++++++++|+++.+..++.
T Consensus 44 ~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 44 DKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 35667888999999999999999999999999999988877776
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.88 E-value=7.1e-05 Score=52.28 Aligned_cols=84 Identities=13% Similarity=0.069 Sum_probs=49.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHH
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 404 (476)
++..+..+...|...|++++|+..|++.++.. +.+...|..+..++...|++++|++.+++..+...-.++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 34556666667777777777777777776653 22345566666777777777777777776665322233444444444
Q ss_pred HHHHh
Q 038936 405 DLLAR 409 (476)
Q Consensus 405 ~~~~~ 409 (476)
..+.+
T Consensus 85 ~~l~~ 89 (100)
T 3ma5_A 85 DAKLK 89 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00069 Score=58.71 Aligned_cols=143 Identities=14% Similarity=0.050 Sum_probs=94.3
Q ss_pred CChhhHHHHHHH--HHhcC---ChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhc---cC-----chhhHHHHHHHHHH
Q 038936 324 PDLVSWTSLIAG--YAQNG---MPDKALEYFELLLKSGTQPDH-IVFVGVLTACTH---AG-----LVDKGLQYFHSIKE 389 (476)
Q Consensus 324 ~~~~~~~~l~~~--~~~~~---~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~-----~~~~a~~~~~~~~~ 389 (476)
.+...|...+.+ +...+ +..+|..+|++.++. .|+. ..+..+..++.. .+ ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 355666666655 33333 347889999999885 4553 334433333321 11 11111122222211
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 038936 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468 (476)
Q Consensus 390 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 468 (476)
....+.+..++..++..+...|++++|...++++ ...|+...|..++..+...|++++|.+.|++++.++|..+ +|.-
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~ 348 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYW 348 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHH
Confidence 1233667778888888888889999999999996 4558888888888889999999999999999999999764 4443
Q ss_pred H
Q 038936 469 M 469 (476)
Q Consensus 469 l 469 (476)
.
T Consensus 349 ~ 349 (372)
T 3ly7_A 349 I 349 (372)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.84 E-value=5.2e-05 Score=54.62 Aligned_cols=60 Identities=17% Similarity=0.011 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 388 (476)
.+..+...|...|++++|+..|++..+.. +.+...+..+..++...|++++|...|+++.
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444444432 1123334444444444444444444444444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00032 Score=66.14 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=109.8
Q ss_pred HhcCC-hHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCc----------hhhHHHHHHHHHHhcCCCCChhhHHHHH
Q 038936 337 AQNGM-PDKALEYFELLLKSGTQPD-HIVFVGVLTACTHAGL----------VDKGLQYFHSIKEKHGLTYTADHYACIV 404 (476)
Q Consensus 337 ~~~~~-~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 404 (476)
.+.|. .++|++.+++++..+ |+ ...|+.-..++...|+ +++++++++++.+. .+-+..+|..-.
T Consensus 39 ~~~~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~ 114 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRC 114 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 34444 478899999999964 54 4456665666666666 89999999999975 466788899999
Q ss_pred HHHHhcC--ChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 405 DLLARSG--RFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHG-NLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 405 ~~~~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
.++.+.| +++++++.++++ ...| +...|+.-...+...| .++++++.++++++.+|.|..+|...+.++.
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~ 189 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP 189 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Confidence 9999999 679999999997 3333 7788988888888888 8999999999999999999999999998764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00023 Score=53.18 Aligned_cols=109 Identities=9% Similarity=-0.085 Sum_probs=61.5
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC-CChhhHHHHHHHHHh----cCChHHHHHH
Q 038936 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-PDLVSWTSLIAGYAQ----NGMPDKALEY 348 (476)
Q Consensus 274 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~ 348 (476)
+++++|...++...+.| .+... +...|...+.+++|...|++..+ .++..+..+...|.. .+++++|++.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 34555555555555554 22221 44444444555555555554432 345555556666665 5667777777
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhc----cCchhhHHHHHHHHHHh
Q 038936 349 FELLLKSGTQPDHIVFVGVLTACTH----AGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 390 (476)
|++..+.| +...+..|...|.. .+++++|.++|++..+.
T Consensus 84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 77776654 34455556666655 66777777777766653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00024 Score=48.28 Aligned_cols=81 Identities=19% Similarity=0.290 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 406 (476)
..+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...++++.+. .+.+...+..++.+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 345555566666666666666666666543 224455556666666666666666666666653 13344455555555
Q ss_pred HHhc
Q 038936 407 LARS 410 (476)
Q Consensus 407 ~~~~ 410 (476)
+.+.
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.77 E-value=3.2e-06 Score=74.49 Aligned_cols=212 Identities=10% Similarity=0.115 Sum_probs=141.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHH
Q 038936 23 HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGF 102 (476)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 102 (476)
..|+..|..++....+.|.+++-.+++....+..- ++..=+.|+-+|++.++..+-.+++. .||..-...+.+-|
T Consensus 80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRC 154 (624)
T ss_dssp CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHH
Confidence 35666778888888888888888888876666533 44444578888888887665443322 26666666777777
Q ss_pred HhcCCHHHHHHHHhcCC------------------------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCC
Q 038936 103 TKGGSLEQARNLFDEMP------------------------QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158 (476)
Q Consensus 103 ~~~g~~~~a~~~~~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 158 (476)
...|.++.|.-+|..+. ..++.+|-.+-.+|...+.+.-|.-.--.+.-+..
T Consensus 155 f~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhad---- 230 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD---- 230 (624)
T ss_dssp HHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS----
T ss_pred HHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH----
Confidence 77777777777776654 13778899999999999988877666555543111
Q ss_pred chHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc-----------cchhh
Q 038936 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD-----------RDVVS 227 (476)
Q Consensus 159 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~ 227 (476)
....++..|-..|.+++...+++..+... ......|+-|.-.|++- ++++..+.++.... .....
T Consensus 231 --eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahL 306 (624)
T 3lvg_A 231 --ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 306 (624)
T ss_dssp --CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTC
T ss_pred --HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 12345566777888888888877765321 34566778888777765 44444444443322 13456
Q ss_pred HHHHHHHHHhcCChhHHHHH
Q 038936 228 WTAMIGRYFQEGRREEGFAL 247 (476)
Q Consensus 228 ~~~l~~~~~~~~~~~~a~~~ 247 (476)
|..++-.|.+-.+++.|...
T Consensus 307 W~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 307 WAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp HHHHHHHHHHHTCHHHHHHT
T ss_pred HHHHHHHHhcchhHHHHHHH
Confidence 88888888888888876543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.57 E-value=4.7e-06 Score=73.50 Aligned_cols=237 Identities=10% Similarity=0.096 Sum_probs=149.3
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHh
Q 038936 92 VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA 171 (476)
Q Consensus 92 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 171 (476)
+..|..|..+..+.|.+.+|++-|- +..|+..|..++....+.|.+++-++.+.-.++ ... +...=+.++.++++
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARK-KAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST-TCC--STTTTHHHHHHHHT
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-Hhc--ccccHHHHHHHHHh
Confidence 4456666777666666666655442 234556666677777777777777666655443 222 22333466666666
Q ss_pred hhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc------------------------cchhh
Q 038936 172 IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD------------------------RDVVS 227 (476)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~ 227 (476)
.++..+.++++. .|+..-...+++-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 666555444431 24443445566666677777777666665521 36678
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhh
Q 038936 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307 (476)
Q Consensus 228 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 307 (476)
|..+-.+|...+++.-|--.--.++- .|| -...++..|...|.+++.+.+++...... .....+|+-|.-.|++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 99999999999988877655444442 222 22234556778888888888888776443 4566778888777776
Q ss_pred cCChhhHHHHHccCCC-----------CChhhHHHHHHHHHhcCChHHHHH
Q 038936 308 CGNVENSKKVFNGMPR-----------PDLVSWTSLIAGYAQNGMPDKALE 347 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~ 347 (476)
- ++++..+.++.... .....|.-++-.|.+-.+++.|..
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 5 56666666654432 244568888888888888887754
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.55 E-value=6.6e-05 Score=52.28 Aligned_cols=55 Identities=20% Similarity=0.192 Sum_probs=26.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 334 AGYAQNGMPDKALEYFELLLKSGTQPDHI-VFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
..+...|++++|+..+++..+.. +.+.. .+..+..++...|++++|++.|+++.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444555555555555554432 11223 444444455555555555555555544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00012 Score=55.05 Aligned_cols=40 Identities=5% Similarity=-0.225 Sum_probs=21.2
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChh
Q 038936 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312 (476)
Q Consensus 272 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 312 (476)
+.+.+++|.+.++...+.. +.+...+..+..++...++++
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~ 53 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFH 53 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHS
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccc
Confidence 3445555666666555554 445555555555555555443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0017 Score=46.29 Aligned_cols=95 Identities=16% Similarity=0.060 Sum_probs=70.9
Q ss_pred ccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhh---HHHHHhhC-CCC-C--cHHHHHHHHHHHHhcCCh
Q 038936 373 HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE---AEDVISKM-PMK-P--DKFLWASLLGGCRIHGNL 445 (476)
Q Consensus 373 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~ 445 (476)
.......+.+.|.+.... + .++..+-..+++++.+..+..+ ++.+++.+ ... | .......+.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 344555666666666554 3 4788888888999998887665 88888885 333 4 334556677789999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHH
Q 038936 446 DLAKRAAEALFEIEPENPATYVTM 469 (476)
Q Consensus 446 ~~A~~~~~~~~~~~p~~~~~~~~l 469 (476)
++|.+.++.+++.+|+|..+....
T Consensus 91 ~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999999998776544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00056 Score=46.66 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=52.0
Q ss_pred CCChhhHHHHHHHHHhcCC---hhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 038936 394 TYTADHYACIVDLLARSGR---FHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 394 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 463 (476)
+.++..+..++.++...++ .++|..+++++ ...| ++..+..++..+...|++++|+..|+++++.+|+++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 4566777777777765444 67888888875 3444 566777778888888999999999999888888743
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.017 Score=57.51 Aligned_cols=153 Identities=16% Similarity=0.139 Sum_probs=96.0
Q ss_pred HHHHhcCChhHHHH-HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHH
Q 038936 34 QFCRQNRALEEGKK-VHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQAR 112 (476)
Q Consensus 34 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 112 (476)
......+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+. + ..-.......|++++|.
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~---~-----~~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD---Q-----DQKFELALKVGQLTLAR 672 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC---H-----HHHHHHHHHHTCHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC---c-----chheehhhhcCCHHHHH
Confidence 33456778888766 4421 1 1122236677777888888888876532 1 11234456789999999
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCc
Q 038936 113 NLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS 192 (476)
Q Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 192 (476)
++.+.+. +...|..+...+.+.|+++.|.+.|..+.. |..+...+...++.+...++-+.....|.
T Consensus 673 ~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-- 738 (814)
T 3mkq_A 673 DLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTGK-- 738 (814)
T ss_dssp HHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC--
T ss_pred HHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc--
Confidence 9887763 557889999999999999999999998875 44555555556655555555444444431
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHH
Q 038936 193 DEVVWSALSDMYGKCGSINEARQIFD 218 (476)
Q Consensus 193 ~~~~~~~l~~~~~~~~~~~~a~~~~~ 218 (476)
++....+|.+.|++++|++++.
T Consensus 739 ----~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 739 ----FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp ----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred ----hHHHHHHHHHcCCHHHHHHHHH
Confidence 2223334445566666655543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0083 Score=52.08 Aligned_cols=72 Identities=7% Similarity=0.008 Sum_probs=42.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhH
Q 038936 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400 (476)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 400 (476)
.++..|..+...+...|++++|+..++++...+ |+...|..+...+...|++++|.+.++++... .|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL---~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL---RPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCcChH
Confidence 344555555555555566666666666666643 55555555566666666666666666666643 4444443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.004 Score=56.39 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=64.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC---CCCcH----HHHHHHHHHHhccCchhhHHHHHHHHHHhc--CCC---C-Chhh
Q 038936 333 IAGYAQNGMPDKALEYFELLLKSG---TQPDH----IVFVGVLTACTHAGLVDKGLQYFHSIKEKH--GLT---Y-TADH 399 (476)
Q Consensus 333 ~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~---~-~~~~ 399 (476)
+..+.+.|++++|+.++++.++.. +.|+. .+++.++.+|...|++++|+.+++++.+-. -+. | ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667788888888888887531 22322 367788888888899988888888776421 112 2 2345
Q ss_pred HHHHHHHHHhcCChhhHHHHHhhC
Q 038936 400 YACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 400 ~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
++.|+..|...|++++|+.+++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 778888899999999888888775
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0025 Score=57.57 Aligned_cols=63 Identities=8% Similarity=-0.071 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCcH-HHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKS-----G-TQPDH-IVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
.+++.+...|...|++++|+.++++.++- | -.|+. .+++.|...|..+|++++|..+++++.+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 35666777777777777777777766532 2 11222 3577777788888888888888777664
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.021 Score=56.87 Aligned_cols=168 Identities=13% Similarity=0.128 Sum_probs=106.8
Q ss_pred hhhcCCHHHHHH-HHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 038936 5 LCNQRRLKEALQ-ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83 (476)
Q Consensus 5 ~~~~~~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (476)
....+++++|.+ ++..++ +......+++.+.+.|.++.|.++.+. . ..-.......|+++.|.++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARDL 674 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHHH
Confidence 345688888877 553333 133347778888889999998876532 1 1123455678999999999
Q ss_pred HHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHH
Q 038936 84 FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS 163 (476)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 163 (476)
.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+...
T Consensus 675 ~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~~~~~a~------------- 734 (814)
T 3mkq_A 675 LTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVTLAKDAE------------- 734 (814)
T ss_dssp HTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHHHHHHHH-------------
T ss_pred HHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHHHHHHHH-------------
Confidence 8775 3457899999999999999999999887654 3344444455555555444433333
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc
Q 038936 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD 222 (476)
Q Consensus 164 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 222 (476)
..|++..|...+-.. | -+...++.|.+.+++++|..+-+....
T Consensus 735 -------~~~~~~~A~~~~~~~---g------~~~~a~~~~~~~~~~~~A~~lA~~~~~ 777 (814)
T 3mkq_A 735 -------TTGKFNLAFNAYWIA---G------DIQGAKDLLIKSQRFSEAAFLGSTYGL 777 (814)
T ss_dssp -------HTTCHHHHHHHHHHH---T------CHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred -------HcCchHHHHHHHHHc---C------CHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 334444444443221 1 122345556667777777777766543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.087 Score=40.21 Aligned_cols=99 Identities=12% Similarity=0.110 Sum_probs=42.9
Q ss_pred hcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHH
Q 038936 104 KGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183 (476)
Q Consensus 104 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 183 (476)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.+...|+.+...++-+
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHHHHHHH
Confidence 344444444443333 2233444444444444444444444444433 3333333333444433333333
Q ss_pred HHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhh
Q 038936 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220 (476)
Q Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 220 (476)
.....| -++.....+...|+++++.++|.+.
T Consensus 85 iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 85 IAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 333333 1233333444556666666666544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.14 Score=39.11 Aligned_cols=127 Identities=13% Similarity=0.113 Sum_probs=78.8
Q ss_pred hhhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 038936 5 LCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF 84 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 84 (476)
..+.|+++.|.++.+.+ .+...|..+.....++|+++-|.++|..... +..+.-.|.-.|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 45678888888887776 5677888888888888888888888876544 445556666677776666554
Q ss_pred HHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038936 85 DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149 (476)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 149 (476)
+.....+ -++.....+.-.|+++++.++|.+..+.+ --.......|..+.|.++.+++
T Consensus 84 ~iA~~~g--~~n~af~~~l~lGdv~~~i~lL~~~~r~~-----eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 84 NIAQTRE--DFGSMLLNTFYNNSTKERSSIFAEGGSLP-----LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHTT--CHHHHHHHHHHHTCHHHHHHHHHHTTCHH-----HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHCc--cHHHHHHHHHHcCCHHHHHHHHHHCCChH-----HHHHHHHHcCcHHHHHHHHHHh
Confidence 4433221 23444445556778888877776654321 1111112245555666666554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.021 Score=40.91 Aligned_cols=77 Identities=22% Similarity=0.176 Sum_probs=56.1
Q ss_pred CCCCChhhHHHHHHHHHhcCCh---hhHHHHHhhC-CCCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 038936 392 GLTYTADHYACIVDLLARSGRF---HEAEDVISKM-PMKP--DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 392 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 465 (476)
+-.|+..+-..+++++.+..+. .+++.+++.+ ...| ....+-.+.-++.+.|++++|.+..+.+++.+|+|..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3456777777788888877764 3566777664 2334 24456667777899999999999999999999998776
Q ss_pred HHH
Q 038936 466 YVT 468 (476)
Q Consensus 466 ~~~ 468 (476)
...
T Consensus 115 ~~L 117 (134)
T 3o48_A 115 GAL 117 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.063 Score=39.00 Aligned_cols=75 Identities=21% Similarity=0.162 Sum_probs=55.9
Q ss_pred CCChhhHHHHHHHHHhcCCh---hhHHHHHhhC-CCCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 038936 394 TYTADHYACIVDLLARSGRF---HEAEDVISKM-PMKP--DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYV 467 (476)
Q Consensus 394 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 467 (476)
.|+..+-..+++++.+..+. .+++.+++.+ ...| .......+.-++.+.|++++|.+..+.+++.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 57777777888888887764 4566777765 2233 3345556677799999999999999999999999977654
Q ss_pred H
Q 038936 468 T 468 (476)
Q Consensus 468 ~ 468 (476)
.
T Consensus 116 L 116 (144)
T 1y8m_A 116 L 116 (144)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.04 Score=37.29 Aligned_cols=64 Identities=5% Similarity=-0.069 Sum_probs=35.7
Q ss_pred ChhhHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 325 DLVSWTSLIAGYAQNGM---PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
++..+..+..++...++ .++|..++++.++.. +-+......+...+...|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555443333 466666666666643 22344555555666666666666666666664
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0082 Score=41.89 Aligned_cols=58 Identities=5% Similarity=-0.047 Sum_probs=27.8
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 366 GVLTACTHAGLVDKGLQYFHSIKEKHG-----LTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 366 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
.++..+...|+++.|...|+.+.+... -.+...++..++.++.+.|++++|...++++
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 344444555555555555555444321 1123344555555555555555555555553
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.023 Score=42.23 Aligned_cols=84 Identities=13% Similarity=0.085 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC---chhhHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChhhH
Q 038936 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG---LVDKGLQYFHSIKEKHGLTY--TADHYACIVDLLARSGRFHEA 416 (476)
Q Consensus 342 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 416 (476)
...+.+.|.+..+.|. ++..+...+..++.+.+ ++++++.+++...+. . .| ..+.+..++.++.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455666666666654 67777767788888877 777899999988876 2 24 466778888889999999999
Q ss_pred HHHHhhC-CCCCc
Q 038936 417 EDVISKM-PMKPD 428 (476)
Q Consensus 417 ~~~~~~~-~~~p~ 428 (476)
.+.++.+ ...|+
T Consensus 91 ~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCC
Confidence 9999886 55564
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.075 Score=38.95 Aligned_cols=96 Identities=16% Similarity=0.302 Sum_probs=46.8
Q ss_pred CChhhHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCcHH----HHHHHH--H-HHhccCchhhHHHHHHHHHHh
Q 038936 324 PDLVSWTSLIAGYAQNGMP------DKALEYFELLLKSGTQPDHI----VFVGVL--T-ACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~----~~~~l~--~-~~~~~~~~~~a~~~~~~~~~~ 390 (476)
.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+- . .+...+++++|.++|+.+...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4556666666666666666 6666666666654 444421 011000 0 112335556666666555543
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 391 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
.-.- ..+|...++.-.++|++..|.+++.+
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 1111 44444444444555555555555554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.10 E-value=1.3 Score=43.95 Aligned_cols=268 Identities=10% Similarity=0.015 Sum_probs=140.3
Q ss_pred HHHhhhhhhhHHHHHHHHHHcC--CCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc-cc--------h--hhHHHHHHH
Q 038936 168 AVSAIQCLRLGKEIHGYIMRTG--FDSDEVVWSALSDMYGKCGSINEARQIFDKMVD-RD--------V--VSWTAMIGR 234 (476)
Q Consensus 168 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--------~--~~~~~l~~~ 234 (476)
+....|+.+.+..++...+..+ -.+....-..+.-+....|..+++..++..... ++ . ..-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3445667777777776655421 123334444455555666666677776666543 22 1 112223333
Q ss_pred HHhcCC-hhHHHHHHHHHHHcCCCCCHhhHH--HHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCCh
Q 038936 235 YFQEGR-REEGFALFSELIKSGIRPNAFTFA--GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311 (476)
Q Consensus 235 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (476)
.+..|. -+++...+..+.... .+...... .+...+...|+.+....++..+.+.. ..+..-...+.-++...|+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 333333 245666666666532 11111112 22223456677777777777766532 22222222333444466777
Q ss_pred hhHHHHHccCCC-CChh-hHH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHH
Q 038936 312 ENSKKVFNGMPR-PDLV-SWT---SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386 (476)
Q Consensus 312 ~~a~~~~~~~~~-~~~~-~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 386 (476)
+.+..+++.+.. .++. -|. ++..+|+..|+......+++.+.+.. ..+......+.-++...|+.+.+.++++.
T Consensus 541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 777777666552 3332 222 34456778888777777888887642 22333333333345556776666666655
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCCh-hhHHHHHhhCCCCCcHHHHHHHHHHHH
Q 038936 387 IKEKHGLTYTADHYACIVDLLARSGRF-HEAEDVISKMPMKPDKFLWASLLGGCR 440 (476)
Q Consensus 387 ~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~~~ 440 (476)
+.+. ..|....-..++.+....|.. .+++..+..+...+|..+-...+.++.
T Consensus 620 L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 620 LSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALS 672 (963)
T ss_dssp GGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 5532 234444344444455555554 578888888865666655544444433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.013 Score=48.64 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcCCCCc---HHHHHHHHHHHhcc-----CchhhHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhc-C
Q 038936 343 DKALEYFELLLKSGTQPD---HIVFVGVLTACTHA-----GLVDKGLQYFHSIKEKHGLTY--TADHYACIVDLLARS-G 411 (476)
Q Consensus 343 ~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-g 411 (476)
..|...+++.++. .|+ ...|..+...|... |+.++|.++|+++++- .| +..++..+++.+++. |
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcC
Confidence 3455555555553 344 33455555555552 6666666666666643 33 244455555555553 5
Q ss_pred ChhhHHHHHhhC
Q 038936 412 RFHEAEDVISKM 423 (476)
Q Consensus 412 ~~~~A~~~~~~~ 423 (476)
+.++|.+.++++
T Consensus 255 d~~~a~~~L~kA 266 (301)
T 3u64_A 255 NRAGFDEALDRA 266 (301)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 566666666553
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=1.1 Score=42.42 Aligned_cols=115 Identities=10% Similarity=-0.008 Sum_probs=74.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHH----HHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 038936 339 NGMPDKALEYFELLLKSGTQPDHIV----FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414 (476)
Q Consensus 339 ~~~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 414 (476)
..+.+.|...+....+... .+... ...++......+...++...+...... .++.......+....+.|+++
T Consensus 227 r~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 227 RQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRR 302 (618)
T ss_dssp HHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHH
T ss_pred hcCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHH
Confidence 3478999999988875432 23322 233333344455355666666765432 344434444555556789999
Q ss_pred hHHHHHhhCCCCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 415 EAEDVISKMPMKP--DKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 415 ~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
.|.+.|+.++..+ .....--++.++...|+.++|..+|+++.+
T Consensus 303 ~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 303 GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999996443 233334455667788999999999999875
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.083 Score=39.59 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=31.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC-CCCcH-------HHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 332 LIAGYAQNGMPDKALEYFELLLKSG-TQPDH-------IVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 332 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
-+..+...|.++.|+-+.+.+.... ..|+. .++..+..++...|++.+|...|++++.
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3445556666666666555543221 11221 2445566666677777777777766543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.49 Score=33.96 Aligned_cols=140 Identities=16% Similarity=0.097 Sum_probs=82.4
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhH
Q 038936 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314 (476)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 314 (476)
..-.|..++..++..+...+ .+..-++.++--....-+-+-..+.++.+-+. .| ...+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHH
Confidence 33456667777777766653 23344444444333333444444444443322 11 1234444444
Q ss_pred HHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCC
Q 038936 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393 (476)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 393 (476)
...+-.+.. +.......+..+..+|+-+.-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++-++ |+
T Consensus 81 i~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 81 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 444443332 3344455677788888888888888886443 4677788888888888888888888888888765 54
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.29 Score=35.91 Aligned_cols=108 Identities=13% Similarity=0.038 Sum_probs=72.7
Q ss_pred CcHHHHHHHHHHHhccCch------hhHHHHHHHHHHhcCCCCChhh-HHHHHH------HHHhcCChhhHHHHHhhC-C
Q 038936 359 PDHIVFVGVLTACTHAGLV------DKGLQYFHSIKEKHGLTYTADH-YACIVD------LLARSGRFHEAEDVISKM-P 424 (476)
Q Consensus 359 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~-~~~l~~------~~~~~g~~~~A~~~~~~~-~ 424 (476)
-|..+|...+....+.|++ ++..++|+++.. .+||+... |...+. .+...++.++|.++|+.+ .
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3555666666666666777 788888888887 45665321 222221 123558899999999886 1
Q ss_pred -CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 038936 425 -MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468 (476)
Q Consensus 425 -~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 468 (476)
.+-=...|.....--.+.|+.+.|.+++.+++.+.|.....+..
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 11126677777777778899999999999999998876554443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.91 Score=41.20 Aligned_cols=185 Identities=9% Similarity=0.070 Sum_probs=108.2
Q ss_pred cCChhHHHHHHHHHHHc-----CCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHH----hhhc
Q 038936 238 EGRREEGFALFSELIKS-----GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM----YSKC 308 (476)
Q Consensus 238 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~ 308 (476)
.|+++.|++.+..+.+. +..........++..|...++++...+.+..+.+..... ......+++. ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788888887766543 234445567778888889999998888776665442122 1222233322 2222
Q ss_pred CChh--hHHHHHccCCC---CC-------hhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCc---HHHHHHHHHHH
Q 038936 309 GNVE--NSKKVFNGMPR---PD-------LVSWTSLIAGYAQNGMPDKALEYFELLLKS--GTQPD---HIVFVGVLTAC 371 (476)
Q Consensus 309 ~~~~--~a~~~~~~~~~---~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 371 (476)
...+ .-..+.+.... .- ......|...|...|++.+|..++..+... |..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3222 22333333322 11 112355677788888898888888887643 21111 12455566778
Q ss_pred hccCchhhHHHHHHHHHHhc-CCCCC----hhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 372 THAGLVDKGLQYFHSIKEKH-GLTYT----ADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 372 ~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
...+++.+|..++.++.... ..+++ ...+...+..+...+++.+|-+.|.++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 88888888888888765321 11222 223455667777788888777765554
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=94.70 E-value=1.2 Score=35.04 Aligned_cols=118 Identities=8% Similarity=0.078 Sum_probs=57.3
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHH
Q 038936 17 ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYN 96 (476)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 96 (476)
+++.+..+++..-...+..+.+.+..+....+. .+.. .++...-...+..+...|..+....+.+.+..++...-.
T Consensus 19 ~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~ 94 (201)
T 3ltj_A 19 YIKNLQDDSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQ 94 (201)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHH
Confidence 344444566666666666666655533332222 2222 234444444555555555544444444444445555555
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 038936 97 TMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138 (476)
Q Consensus 97 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (476)
..+.++.+.|+.+....+.+.+..+++..-...+.++.+.++
T Consensus 95 ~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 95 SAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 555555555554444444444444444444444445444444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.67 E-value=0.21 Score=35.60 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=58.9
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhh---HHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChh
Q 038936 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK---GLQYFHSIKEKHGLTY--TADHYACIVDLLARSGRFH 414 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 414 (476)
.....+.+.|.+....|. |+..+-..+..++.+...... ++.+++.+... + .| .......|+.++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHH
Confidence 334555666666666554 666666667778877765554 88888887754 2 23 4556677888999999999
Q ss_pred hHHHHHhhC-CCCC
Q 038936 415 EAEDVISKM-PMKP 427 (476)
Q Consensus 415 ~A~~~~~~~-~~~p 427 (476)
+|.+.++.+ ...|
T Consensus 92 ~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 92 KALKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCC
Confidence 999999886 4445
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.27 Score=40.96 Aligned_cols=83 Identities=12% Similarity=0.086 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhcccc-----hhhHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc-ccHHH
Q 038936 210 INEARQIFDKMVDRD-----VVSWTAMIGRYFQE-----GRREEGFALFSELIKSGIRPNAFTFAGVLNACADH-AAEEL 278 (476)
Q Consensus 210 ~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 278 (476)
...|...+++..+-| ...|..+...|... |+.++|...|++.++.+..-+..++......++.. |+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 355666666664433 23566666667663 77777777777777754212355566666666663 77777
Q ss_pred HHHHHHHHHHhCCC
Q 038936 279 GKQVHGYMTRIGYD 292 (476)
Q Consensus 279 a~~~~~~~~~~~~~ 292 (476)
+.+.+++.......
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 77777777766443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.62 E-value=0.84 Score=32.80 Aligned_cols=84 Identities=12% Similarity=0.033 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHH
Q 038936 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286 (476)
Q Consensus 207 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 286 (476)
+|++......+-.+- .+....+..+......|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++
T Consensus 74 C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 344444444443332 23334555677778888888888888876443 3677788888888888999998888888888
Q ss_pred HHhCCC
Q 038936 287 TRIGYD 292 (476)
Q Consensus 287 ~~~~~~ 292 (476)
-+.|++
T Consensus 152 C~kG~k 157 (172)
T 1wy6_A 152 CKKGEK 157 (172)
T ss_dssp HHTTCH
T ss_pred HHhhhH
Confidence 888754
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=94.53 E-value=1.4 Score=35.00 Aligned_cols=80 Identities=9% Similarity=0.173 Sum_probs=34.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 038936 60 GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139 (476)
Q Consensus 60 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 139 (476)
+...-...+..+...|..+....+.+.+..++...-...+.++.+.|+.+....+.+.+..+++..-...+.++.+.|+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~ 111 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDE 111 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH
Confidence 33333333444444444333333333333344444444444444444443333344444444444444445555555543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.28 Score=36.78 Aligned_cols=118 Identities=12% Similarity=0.044 Sum_probs=75.1
Q ss_pred CCCCcHH--HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhcCChhhHHHHHhhC---
Q 038936 356 GTQPDHI--VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA-------DHYACIVDLLARSGRFHEAEDVISKM--- 423 (476)
Q Consensus 356 ~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~--- 423 (476)
|+.|... ++..-++.+...|.++.|+-+...+....+.+|+. .++..+++++...|++..|...|+++
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4444433 33334566778888998888877766543344442 35677899999999999999999874
Q ss_pred ----CCCC--------------------cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 424 ----PMKP--------------------DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 424 ----~~~p--------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
...+ +...-..+..+|...|++++|+..++.+-... -.+.....||.+|.
T Consensus 93 ~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~-Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 93 KKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ-RTPKINMLLANLYK 166 (167)
T ss_dssp HHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG-CCHHHHHHHHHHCC
T ss_pred HHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh-cCHHHHHHHHHHhc
Confidence 1111 12333457778889999999999887653222 24567778888774
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=93.53 E-value=3.2 Score=36.70 Aligned_cols=25 Identities=0% Similarity=-0.219 Sum_probs=13.5
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHH
Q 038936 262 TFAGVLNACADHAAEELGKQVHGYM 286 (476)
Q Consensus 262 ~~~~l~~~~~~~~~~~~a~~~~~~~ 286 (476)
....+...|...|+.++..+++...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555566665555555543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.41 E-value=3.2 Score=35.20 Aligned_cols=180 Identities=9% Similarity=0.108 Sum_probs=93.4
Q ss_pred HHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHH----H
Q 038936 71 YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDL----Y 146 (476)
Q Consensus 71 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~ 146 (476)
....|++=+|.++++. +..-|.+.+++++|.+++..- ...+.+.|+...|-++ +
T Consensus 23 ~I~~G~yYEAhQ~~Rt-----------l~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llv 80 (312)
T 2wpv_A 23 KIKAGDYYEAHQTLRT-----------IANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLL 80 (312)
T ss_dssp HHHHTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhccChHHHHHHHHH-----------HHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHH
Confidence 3445566566554443 555566777777777765432 3344555666555553 2
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHhhhh-hhhHHHHHHHH----HHcC--CCchHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 038936 147 RMMQNFENSVSNKFTLSSVLSAVSAIQC-LRLGKEIHGYI----MRTG--FDSDEVVWSALSDMYGKCGSINEARQIFDK 219 (476)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 219 (476)
+...+ .+.+++......++..+..-.. ...-.++++.+ .+.| -..++.....+...|.+.|++.+|+..|-.
T Consensus 81 ev~~~-~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 81 EVYDL-AEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHH-TTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHH-cCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 22222 4566666655555555433211 11112233333 2232 124667788888999999999999887753
Q ss_pred hcccchhhHHHHHHHHHhc---CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHH
Q 038936 220 MVDRDVVSWTAMIGRYFQE---GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288 (476)
Q Consensus 220 ~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 288 (476)
-...++..+..++.-+... |...++ +...-..++ .+...++...|..+++...+
T Consensus 160 ~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 160 GTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 3322444444444333332 222221 111111222 34456777888877776543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.94 E-value=3.8 Score=34.75 Aligned_cols=169 Identities=9% Similarity=0.066 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHH----HHHHHHcCCCCCHhhHHHHHHHH
Q 038936 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL----FSELIKSGIRPNAFTFAGVLNAC 270 (476)
Q Consensus 195 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~ 270 (476)
..|..+..-|.+.+++++|++++..- ...+.+.|+...|.++ ++-..+.+++++..+...++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35666777788889999999887543 3345556666555554 44455567788887777777765
Q ss_pred hccccHH-HHHHHHHHHHH----hCC--CCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhc---C
Q 038936 271 ADHAAEE-LGKQVHGYMTR----IGY--DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN---G 340 (476)
Q Consensus 271 ~~~~~~~-~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~---~ 340 (476)
..-...+ .-.++++.+.+ .|- .-++.....+...|.+.|++.+|+..|-.....+...+..++.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 5422111 11233333332 221 235677778888889999999888876533222344444333332222 2
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHH-HHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 341 MPDKALEYFELLLKSGTQPDHIVF-VGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 341 ~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
...++ ..| ...+-.|...|+...|..+++....+
T Consensus 183 ~~~e~----------------dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTV----------------AEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHH----------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CcchH----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 22221 111 11122355678888888888877654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=7.2 Score=37.00 Aligned_cols=112 Identities=11% Similarity=-0.018 Sum_probs=57.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHH----HHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHH
Q 038936 240 RREEGFALFSELIKSGIRPNAFTFA----GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315 (476)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (476)
+.+.|...+....+.. ..+..... .+.......+....+...+...... ..+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 6677777777765443 22222222 1222223334233444444443332 223223333444445667788887
Q ss_pred HHHccCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 316 KVFNGMPRPD---LVSWTSLIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 316 ~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
..|+.+.... ....-=+..++...|+.++|..+|+.+..
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7777776522 22222344566677777777777777754
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.53 E-value=6.1 Score=38.32 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=32.2
Q ss_pred HhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCC
Q 038936 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 424 (476)
|...|+++.|+++-+++... .|.+..+|..|+.+|...|+++.|+-.+..++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44566666666666666643 34445666666666666666666666666553
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=92.49 E-value=3.3 Score=32.82 Aligned_cols=94 Identities=10% Similarity=0.065 Sum_probs=50.2
Q ss_pred hHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCC
Q 038936 77 ISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV 156 (476)
Q Consensus 77 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 156 (476)
.+....+.+.+..++...-...+..+.+.|+.+....+.+.+..++...-...+.++.+.++.+. ...+..+.. .
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~----~ 92 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK----D 92 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT----C
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc----C
Confidence 33344444445556666666666667777765555555565666666666666666666665433 333333332 2
Q ss_pred CCchHHHHHHHHHHhhhhh
Q 038936 157 SNKFTLSSVLSAVSAIQCL 175 (476)
Q Consensus 157 ~~~~~~~~ll~~~~~~~~~ 175 (476)
++...-...+.++...++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~ 111 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDE 111 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHHhCcH
Confidence 3444444444455444443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=92.41 E-value=2.9 Score=34.30 Aligned_cols=125 Identities=14% Similarity=0.055 Sum_probs=79.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 038936 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413 (476)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 413 (476)
....+.|+.++|++....-++.. +-|...-..++.-+|-.|++++|.+-++...+. .|+...-..+..-+.++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH---
Confidence 45678899999999998888864 456667777888899999999999998888754 44432222221222221
Q ss_pred hhHH-HHHhhC--C--CCCcHHHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCchh
Q 038936 414 HEAE-DVISKM--P--MKPDKFLWASLLGGCR--IHGNLDLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 414 ~~A~-~~~~~~--~--~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~ 465 (476)
+... ++|.-- + ......-...++.+.. ..|+.++|..+-.++++..|..+..
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 1122 233221 1 1112223344555544 4599999999999999998876543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.34 E-value=9.7 Score=37.90 Aligned_cols=251 Identities=10% Similarity=-0.044 Sum_probs=135.7
Q ss_pred HHHHHcCCCHHHHHHHHHhhcc----cchh--hHHHHHHHHHhcCChhHHHHHHHHHHHcCC--C-----CCHhhHHHHH
Q 038936 201 SDMYGKCGSINEARQIFDKMVD----RDVV--SWTAMIGRYFQEGRREEGFALFSELIKSGI--R-----PNAFTFAGVL 267 (476)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~----~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~l~ 267 (476)
.-+....|+.++++.+++.... .+.. .-..+.-+.+..|..+++..++.......- . +....-..+.
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 3445677888899999888765 2222 222334455666666678887777665321 0 1111111222
Q ss_pred HHH--hccccHHHHHHHHHHHHHhCCCCch--hhHHHHHHHhhhcCChhhHHHHHccCCC-CChhh--HHHHHHHHHhcC
Q 038936 268 NAC--ADHAAEELGKQVHGYMTRIGYDPYS--FAASALVHMYSKCGNVENSKKVFNGMPR-PDLVS--WTSLIAGYAQNG 340 (476)
Q Consensus 268 ~~~--~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~--~~~l~~~~~~~~ 340 (476)
-++ ...++ +++...+..+.... .+.. ..-..+...+.-.|+-+....++..+.+ .+... .-.+.-++...|
T Consensus 461 LGla~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 461 IGLAAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHHHSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC
Confidence 222 23334 34455555544432 1111 1222344556667777666666665432 22222 233444566789
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHH--HHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH
Q 038936 341 MPDKALEYFELLLKSGTQPDHIV--FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418 (476)
Q Consensus 341 ~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 418 (476)
+.+.+..+.+.+.... .|.... -..+.-+|+..|+.....+++..+... ...++.-...++-++...|+.+.+.+
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 9999999988887631 222221 123455678888987777788887752 23334334444555566788787888
Q ss_pred HHhhCCCC--CcHHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 038936 419 VISKMPMK--PDKFLWASLLGGCRIHGNL-DLAKRAAEALF 456 (476)
Q Consensus 419 ~~~~~~~~--p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 456 (476)
+++.+... |.+..-..+..+....|+. .+++..+..+.
T Consensus 616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 88765323 3333333333334434443 56777777765
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.21 E-value=6.3 Score=40.84 Aligned_cols=163 Identities=8% Similarity=0.000 Sum_probs=95.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhh
Q 038936 96 NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL 175 (476)
Q Consensus 96 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 175 (476)
..++..+.+.|..+-+.++..... .++.....+..++...|++++|.+.|.+... +...+......+.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~~~~~--------- 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAVLR--------- 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSCSSHH---------
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhhhhhc---------
Confidence 345556667777777776655443 3444555667888889999999999987652 2222211100000
Q ss_pred hhHHHHHHHHHHcC--CCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc---c-ch----hhHHHHHHHHHhcCChhHHH
Q 038936 176 RLGKEIHGYIMRTG--FDSDEVVWSALSDMYGKCGSINEARQIFDKMVD---R-DV----VSWTAMIGRYFQEGRREEGF 245 (476)
Q Consensus 176 ~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~----~~~~~l~~~~~~~~~~~~a~ 245 (476)
. +..+.... ...-..-|..++..+.+.+.++.+.++-....+ + +. ..|..+.+.+...|++++|.
T Consensus 884 -~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 884 -E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp -H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred -c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 0 00111110 111234567777788888888777776655422 1 11 25778888889999999998
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhccccHH
Q 038936 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277 (476)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (476)
..+..+.....+ ...+..++..+|..|..+
T Consensus 959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 959 VALMVLSTTPLK--KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHSSSC--HHHHHHHHHHHHHHCCHH
T ss_pred HHHHhCCCHHHH--HHHHHHHHHHHHhCCChh
Confidence 888877655432 344555666666555443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.99 E-value=0.99 Score=43.67 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=76.6
Q ss_pred HHHHHHhcCC-hHHHHHHHHHHHHcCCCCcHHHH--HHHHHHHhccC-chhhHHHHHHHHHHhc-----CCCCC------
Q 038936 332 LIAGYAQNGM-PDKALEYFELLLKSGTQPDHIVF--VGVLTACTHAG-LVDKGLQYFHSIKEKH-----GLTYT------ 396 (476)
Q Consensus 332 l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~-~~~~a~~~~~~~~~~~-----~~~~~------ 396 (476)
++..+...++ ++.|+.+|+++.+.. |...++ ..++..+...+ +--+|.+++.+..+.. ..++.
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 3343444555 577999999988864 433332 23333333333 2234555555544310 11211
Q ss_pred -----hhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038936 397 -----ADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEAL 455 (476)
Q Consensus 397 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 455 (476)
......-++.+...|+++-|+++-+++ ...| +..+|..|..+|...|+++.|+-.+..+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112233355677899999999999996 4445 6789999999999999999999888776
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.87 E-value=7.1 Score=35.35 Aligned_cols=197 Identities=11% Similarity=0.036 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHhhcc-----c----chhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHhhHHHHHHHH----hcc
Q 038936 208 GSINEARQIFDKMVD-----R----DVVSWTAMIGRYFQEGRREEGFALFSELIKS-GIRPNAFTFAGVLNAC----ADH 273 (476)
Q Consensus 208 ~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~----~~~ 273 (476)
|+++.|++.+-.+.+ . .......++..|...|+++...+.+.-+.+. |.. ......+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcC
Confidence 678888887766532 1 2334667788899999999988877766543 322 22233344332 222
Q ss_pred ccHHH--HHHHHHHHHHh--C-CCC---chhhHHHHHHHhhhcCChhhHHHHHccCCC----C-C----hhhHHHHHHHH
Q 038936 274 AAEEL--GKQVHGYMTRI--G-YDP---YSFAASALVHMYSKCGNVENSKKVFNGMPR----P-D----LVSWTSLIAGY 336 (476)
Q Consensus 274 ~~~~~--a~~~~~~~~~~--~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~----~~~~~~l~~~~ 336 (476)
...+. -..+....... | +-. .......|...|...|++.+|..++..+.. . + ...+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22221 11121111110 1 001 122345678889999999999999887752 1 1 34566677889
Q ss_pred HhcCChHHHHHHHHHHHH----cCCCCcH--HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 038936 337 AQNGMPDKALEYFELLLK----SGTQPDH--IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410 (476)
Q Consensus 337 ~~~~~~~~A~~~~~~~~~----~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 410 (476)
...+++.+|..++.++.. ....|+. ..+...+..+...+++.+|... |..+...+...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~----------------y~e~~~~~~~~ 251 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY----------------LQEIYQTDAIK 251 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH----------------HHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH----------------HHHHHhccccc
Confidence 999999999999988743 2222222 2345555556666666655332 55566666667
Q ss_pred CChhhHHHHHhh
Q 038936 411 GRFHEAEDVISK 422 (476)
Q Consensus 411 g~~~~A~~~~~~ 422 (476)
++.......+..
T Consensus 252 ~d~~~~~~~L~~ 263 (445)
T 4b4t_P 252 SDEAKWKPVLSH 263 (445)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 766555444443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.39 E-value=1.7 Score=31.17 Aligned_cols=71 Identities=6% Similarity=-0.001 Sum_probs=48.6
Q ss_pred CCCcHHHHHHHHHHHhccC---chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc
Q 038936 357 TQPDHIVFVGVLTACTHAG---LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD 428 (476)
Q Consensus 357 ~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 428 (476)
-.|+..+--.+..++.+.. +..+++.+++.+... +..-..+.+..|+.++.+.|++++|.+..+.+ ...|+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 3456665555566665544 456788888888765 32224666778888899999999999888885 55664
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.13 E-value=1.9 Score=38.33 Aligned_cols=73 Identities=14% Similarity=0.083 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH----hcCCCCChhhHHHH
Q 038936 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE----KHGLTYTADHYACI 403 (476)
Q Consensus 330 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l 403 (476)
..++..+...|++.+|+..+..+.... +.+...+..++.++...|+..+|++.|++... ..|+.|+..+-...
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 345666777888888888888877653 44666788888888888888888888877543 45777777654433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.88 E-value=11 Score=38.97 Aligned_cols=186 Identities=15% Similarity=0.127 Sum_probs=115.3
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC----C----------------
Q 038936 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR----P---------------- 324 (476)
Q Consensus 265 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~---------------- 324 (476)
.++..+...+..+.+..+... ++.++...-.+..++..+|++++|..+|++... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 344555566666655554322 234444445567889999999999999987642 0
Q ss_pred ------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCC
Q 038936 325 ------DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH----IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394 (476)
Q Consensus 325 ------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 394 (476)
-..-|..++..+.+.+.++.++++-+..++....-+. ..|..+.+.+...|++++|...+-.+... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---P 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---H
Confidence 0123667788888999999999988887765322221 24777888999999999998888776543 3
Q ss_pred CChhhHHHHHHHHHhcCChhhH------------HHHHhh-CC-C-CC-cHHHHHHHHHH-HHhcCChH-HHHHHHHHHH
Q 038936 395 YTADHYACIVDLLARSGRFHEA------------EDVISK-MP-M-KP-DKFLWASLLGG-CRIHGNLD-LAKRAAEALF 456 (476)
Q Consensus 395 ~~~~~~~~l~~~~~~~g~~~~A------------~~~~~~-~~-~-~p-~~~~~~~l~~~-~~~~g~~~-~A~~~~~~~~ 456 (476)
--......|+..++..|..+.- .+++.. +. . .+ +.+.|..++.+ +...|++. .|..+|+++.
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 3455677787777777665433 333322 11 0 01 11124344444 33445554 5667788887
Q ss_pred Hc
Q 038936 457 EI 458 (476)
Q Consensus 457 ~~ 458 (476)
++
T Consensus 1049 RL 1050 (1139)
T 4fhn_B 1049 RY 1050 (1139)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.85 E-value=4 Score=29.73 Aligned_cols=70 Identities=6% Similarity=-0.001 Sum_probs=43.8
Q ss_pred CCcHHHHHHHHHHHhccC---chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc
Q 038936 358 QPDHIVFVGVLTACTHAG---LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD 428 (476)
Q Consensus 358 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 428 (476)
.|+..+--.+..++.+.. +..+++.+++.+... +..-..+....|+.++.+.|++++|.+..+.+ ...|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 455555444555555544 445677777777764 22224555667777888888888888877775 44553
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.82 E-value=2.5 Score=28.48 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 038936 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405 (476)
Q Consensus 342 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (476)
.-+..+-++.+....+.|++......+++|.+.+++..|+++++.++.+.+.. ..+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 34556666667777788999999999999999999999999998888774433 445666543
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.65 E-value=3.3 Score=27.72 Aligned_cols=86 Identities=20% Similarity=0.144 Sum_probs=60.7
Q ss_pred hhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038936 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253 (476)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 253 (476)
..++|..+-+.+...+. ...+-..-+..+...|++++|..+.+...-||...|-.|- -.+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHh
Confidence 45566666666655553 3333344456778899999999999999888988887654 4577888888888888887
Q ss_pred cCCCCCHhhHH
Q 038936 254 SGIRPNAFTFA 264 (476)
Q Consensus 254 ~~~~~~~~~~~ 264 (476)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 77 55555554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.26 E-value=3.6 Score=27.60 Aligned_cols=86 Identities=20% Similarity=0.174 Sum_probs=59.7
Q ss_pred hhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038936 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253 (476)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 253 (476)
..++|..+-+.+...+. ...+-..-+..+...|++++|..+.+...-||...|-.|- -.+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALC--EYRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHH--HHHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHh
Confidence 45566666666555553 3333344456678899999999999999988988887664 4567888888888878777
Q ss_pred cCCCCCHhhHH
Q 038936 254 SGIRPNAFTFA 264 (476)
Q Consensus 254 ~~~~~~~~~~~ 264 (476)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 55555544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.02 E-value=10 Score=32.49 Aligned_cols=164 Identities=13% Similarity=0.144 Sum_probs=77.0
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHH----HHHHhccCCCCCchHHHHHHHHHHhhh
Q 038936 98 MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY----RMMQNFENSVSNKFTLSSVLSAVSAIQ 173 (476)
Q Consensus 98 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~~ 173 (476)
+..-|.+.+++++|.+++-.- ...+.+.|+...+-++. +-..+ .+.++|......++..+....
T Consensus 41 i~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~-~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 41 VAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQ-AGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCC
Confidence 444456666666666654332 23344445554444433 22222 445555555444444443222
Q ss_pred h-----hhhHHHHHHHHHHcC--CCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHH
Q 038936 174 C-----LRLGKEIHGYIMRTG--FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246 (476)
Q Consensus 174 ~-----~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 246 (476)
. ..-..+.+..-.+.| ..-++.....+...|.+.+++.+|+..|-.-.++.+..+..++.-+...+...+
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--- 185 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT--- 185 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG---
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc---
Confidence 1 111111222222223 234566777788888888999888887732222222444444333333322111
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHH
Q 038936 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288 (476)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 288 (476)
++...-..++ .|...++...|..+++...+
T Consensus 186 -----------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -----------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1112222222 34455677777776655543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.95 E-value=3.1 Score=36.90 Aligned_cols=53 Identities=15% Similarity=0.358 Sum_probs=25.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038936 199 ALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSEL 251 (476)
Q Consensus 199 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 251 (476)
.++..+...|++++++..+..+... +...|..++.++.+.|+..+|++.|+.+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444555555555554444322 2234445555555555555555555443
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=88.53 E-value=7.5 Score=30.35 Aligned_cols=79 Identities=9% Similarity=0.178 Sum_probs=32.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 038936 60 GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138 (476)
Q Consensus 60 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (476)
+...-...+..+...|..+....+.+.+..++.......+.++.+.|+.+....+.+.+..+++..-...+.++.+.++
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 3333333344444444433333333333334444444444444444444333333343444444444444444444443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.44 E-value=2.7 Score=28.34 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcc
Q 038936 44 EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88 (476)
Q Consensus 44 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 88 (476)
+..+.++.+-...+-|++....+.+.+|-+.+++..|.++++.++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445555555555566666666666666666666666666666655
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=87.12 E-value=12 Score=31.12 Aligned_cols=182 Identities=7% Similarity=-0.034 Sum_probs=94.9
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh----HHHHHHHHH--cccc
Q 038936 17 ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNI----SDAQTLFDE--MQER 90 (476)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~--~~~~ 90 (476)
+++.+..+++..-...+..+...+.. .+...+..+.+. ++...-...+.++...|.. .....++.. ..++
T Consensus 28 L~~~L~~~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~d---~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~ 103 (280)
T 1oyz_A 28 LFRLLDDHNSLKRISSARVLQLRGGQ-DAVRLAIEFCSD---KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDK 103 (280)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCH-HHHHHHHHHHTC---SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHccCCc-hHHHHHHHHHcC---CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCC
Confidence 33444567777777777778777753 455555555543 4555556666777776643 233344432 2346
Q ss_pred cchHHHHHHHHHHhcCC-----HHHHHHHH-hcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHH
Q 038936 91 DVCSYNTMISGFTKGGS-----LEQARNLF-DEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164 (476)
Q Consensus 91 ~~~~~~~l~~~~~~~g~-----~~~a~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 164 (476)
+.......+.++.+.|. ...+...+ ..+..+++.+-...+.++...|+.+ +...+..+.. .++...-..
T Consensus 104 ~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~ 178 (280)
T 1oyz_A 104 SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA-TIPLLINLLK----DPNGDVRNW 178 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C-CHHHHHHHHT----CSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc----CCCHHHHHH
Confidence 66666666777666552 23444444 4455677777777788888887744 4444444443 244444444
Q ss_pred HHHHHHhhhh-hhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCH
Q 038936 165 VLSAVSAIQC-LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210 (476)
Q Consensus 165 ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 210 (476)
.+.++...+. ...+...+..+.+ .++..+....+.++.+.|+.
T Consensus 179 a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~ 222 (280)
T 1oyz_A 179 AAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDK 222 (280)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCH
Confidence 4444444331 1222222222221 23444444455555555543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.82 E-value=14 Score=30.48 Aligned_cols=111 Identities=5% Similarity=0.089 Sum_probs=66.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc--cc----chHHHHHHHHHHhcCC
Q 038936 34 QFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE--RD----VCSYNTMISGFTKGGS 107 (476)
Q Consensus 34 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~g~ 107 (476)
..+.+.|++++++.....-++.. +-|...-..+++.+|-.|++++|.+.++...+ |+ ...|..+|.+-...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R-- 81 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR-- 81 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHH--
Confidence 34567788888888888777765 34677777788888888888888888887764 22 22344444432211
Q ss_pred HHHHHHHHhcCCCC----CcchH-HHHHHHHH--hcCChhHHHHHHHHHHh
Q 038936 108 LEQARNLFDEMPQR----DNFSW-TAMISGYV--RYNQPIEALDLYRMMQN 151 (476)
Q Consensus 108 ~~~a~~~~~~~~~~----~~~~~-~~l~~~~~--~~~~~~~a~~~~~~~~~ 151 (476)
.++|.--..| .+..| ..++.+.. ..|+.++|.++-.++.+
T Consensus 82 ----~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 82 ----KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ----HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 1233322222 22223 33344433 45888888888777755
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.95 E-value=6 Score=28.38 Aligned_cols=60 Identities=15% Similarity=0.297 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 038936 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405 (476)
Q Consensus 344 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (476)
+..+-++.+....+.|++......+++|.+.+|+..|+.+++-++.+.+. ...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~--~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC--chhhHHHHHH
Confidence 45555666667778899999999999999999999999999988887443 3555766643
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.55 E-value=7.2 Score=35.14 Aligned_cols=95 Identities=11% Similarity=-0.034 Sum_probs=60.1
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHccCCC------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCcHHH--H
Q 038936 296 FAASALVHMYSKCGNVENSKKVFNGMPR------PDLVSWTSLIAGYAQNGMPDKALEYFELLLKS---GTQPDHIV--F 364 (476)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~--~ 364 (476)
.+...+...|.+.|++++|.+.|.++.. .-...+...+..+...+++..+...+.+.... +..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3556677888888888888888877653 22345666777778888888888887776542 22232221 1
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 365 VGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 365 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
..-+..+...+++..|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11222345567777777777776654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=83.71 E-value=20 Score=30.70 Aligned_cols=169 Identities=12% Similarity=0.083 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHH----HHHHHcCCCCCHhhHHHHHHHH
Q 038936 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF----SELIKSGIRPNAFTFAGVLNAC 270 (476)
Q Consensus 195 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~ 270 (476)
.+|..+..-|.+.+++++|++++-.- ...+.+.|+...+.++- +-..+.++++|..+...++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35666777788999999999887443 33455556655554443 4455567778877777777666
Q ss_pred hccccHH-HHHHHHHHHHH----hC--CCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChH
Q 038936 271 ADHAAEE-LGKQVHGYMTR----IG--YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343 (476)
Q Consensus 271 ~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 343 (476)
......+ .=..+++.+++ .| ..-++.....+...|.+.+++.+|+..|-.-..+.+..+..++.-+...+...
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence 5433211 11223333322 23 22356677778889999999999988875333333355544444333333221
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 344 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
++ +... ...+--|...+++..|..+++...+
T Consensus 185 e~--------------dlfi-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 TA--------------PLYC-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GH--------------HHHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cH--------------HHHH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11 1111 1122235566788888777666554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.10 E-value=9.2 Score=25.66 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=56.2
Q ss_pred cHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 275 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
..++|..+-+.+...+. ...+--.-+..+...|+|++|..+.+...-||...|-++- -.+.|-.+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHh
Confidence 45666666666655542 2222222234567889999999998888888888887664 3567777888877777777
Q ss_pred cCCCCcHHHH
Q 038936 355 SGTQPDHIVF 364 (476)
Q Consensus 355 ~~~~~~~~~~ 364 (476)
.| .|....|
T Consensus 97 sg-~p~~q~F 105 (115)
T 2uwj_G 97 SS-DPALADF 105 (115)
T ss_dssp CS-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 66 4444444
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.51 E-value=20 Score=32.27 Aligned_cols=63 Identities=16% Similarity=0.071 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD--HIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
+...+...|.+.|++++|.+.+.++...-..+. ...+...++.+...+++..+...+.++...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 455677777777777777777777766432222 234556666777777777777777776543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.58 E-value=6.8 Score=28.09 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc---ccchHHHHHHH
Q 038936 44 EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE---RDVCSYNTMIS 100 (476)
Q Consensus 44 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 100 (476)
+..+-++.+...++-|++....+.+.+|-+.+++..|.++|+.++. +...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 4455555555556666777777777777777777777777766653 22334554443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 476 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-06 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (111), Expect = 2e-06
Identities = 51/378 (13%), Positives = 106/378 (28%), Gaps = 17/378 (4%)
Query: 106 GSLEQARNLFDEMPQRDN---FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTL 162
G E A ++ +++ + S + + + + +
Sbjct: 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN---PLLAEA 69
Query: 163 SSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD 222
S L V + H + L+ G + A Q + +
Sbjct: 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129
Query: 223 RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQV 282
+ + + +K+ F A C +A E+ +
Sbjct: 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189
Query: 283 HGYMTRIGYDP-YSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQ 338
H + + DP + A L ++ + + + + V +L Y +
Sbjct: 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249
Query: 339 NGMPDKALEYFELLLKSGTQPDHI-VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397
G+ D A++ + ++ QP + + A G V + ++ A
Sbjct: 250 QGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYN--TALRLCPTHA 305
Query: 398 DHYACIVDLLARSGRFHEAEDVISK-MPMKPDKFLWASLLGGCRIH-GNLDLAKRAAEAL 455
D + ++ G EA + K + + P+ S L G L A +
Sbjct: 306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365
Query: 456 FEIEPENPATYVTMANIY 473
I P Y M N
Sbjct: 366 IRISPTFADAYSNMGNTL 383
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 476 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.73 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.63 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.45 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.35 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.35 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.33 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.31 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.3 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.28 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.15 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.13 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.13 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.09 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.01 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.0 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.92 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.91 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.9 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.86 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.85 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.71 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.7 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.68 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.67 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.64 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.6 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.57 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.44 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.44 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.43 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.43 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.39 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.38 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.38 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.36 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.3 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.3 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.28 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.28 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.19 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.16 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.16 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.0 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.98 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.95 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.75 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.68 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.66 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.58 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.53 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.41 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.35 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.24 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.72 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.23 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.67 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.25 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.2 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.29 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.64 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.6 | |
| d1u9pa1 | 36 | Arc repressor {Salmonella bacteriophage P22 [TaxId | 80.41 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.6e-25 Score=200.42 Aligned_cols=367 Identities=14% Similarity=0.089 Sum_probs=252.7
Q ss_pred HHHHHHhcCChHHHHHHHHHccc--c-cchHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHhcCChh
Q 038936 67 LLDMYAKCGNISDAQTLFDEMQE--R-DVCSYNTMISGFTKGGSLEQARNLFDEMPQ--R-DNFSWTAMISGYVRYNQPI 140 (476)
Q Consensus 67 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~ 140 (476)
+...+.+.|++++|++.++++.+ | ++..+..+..++.+.|++++|...|++..+ | ++.+|..+..++.+.|+++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 34455566777777777776653 2 345566666666666666666666665543 2 3445555666666666666
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhh
Q 038936 141 EALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220 (476)
Q Consensus 141 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 220 (476)
+|++.+..... .. +.+..............+....+.......
T Consensus 85 ~A~~~~~~~~~------------------------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (388)
T d1w3ba_ 85 EAIEHYRHALR------------------------------------LK-PDFIDGYINLAAALVAAGDMEGAVQAYVSA 127 (388)
T ss_dssp HHHHHHHHHHH------------------------------------HC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHH
T ss_pred ccccccccccc------------------------------------cc-cccccccccccccccccccccccccccccc
Confidence 66666666554 22 111112222222222222222222222222
Q ss_pred ---cccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhh
Q 038936 221 ---VDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFA 297 (476)
Q Consensus 221 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 297 (476)
..................+....+...+.+..... +.+...+..+...+...|+++.|...++...+.. +.+...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 205 (388)
T d1w3ba_ 128 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA 205 (388)
T ss_dssp HHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHH
Confidence 11222333334444555556666666666555543 3344555566666677777777777777776654 445666
Q ss_pred HHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 038936 298 ASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374 (476)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (476)
+..+...+...|++++|...++.... .+...+..+...+.+.|++++|+..|++..+.. +-+..++..+...+...
T Consensus 206 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 284 (388)
T d1w3ba_ 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 77777888888888888888776653 455677788889999999999999999999864 33566888899999999
Q ss_pred CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHH
Q 038936 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAA 452 (476)
Q Consensus 375 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 452 (476)
|++++|.+.++.+... .+.+...+..++.++.+.|++++|++.|+++ ...| +..++..++.++...|++++|+..|
T Consensus 285 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 362 (388)
T d1w3ba_ 285 GSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999874 4667788999999999999999999999995 5566 5668899999999999999999999
Q ss_pred HHHHHcCCCCchhHHHHHHhhhc
Q 038936 453 EALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 453 ~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
+++++++|+++.+|.+||.+|.+
T Consensus 363 ~~al~l~P~~~~a~~~lg~~~~~ 385 (388)
T d1w3ba_ 363 KEAIRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999864
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.4e-22 Score=182.38 Aligned_cols=372 Identities=12% Similarity=0.082 Sum_probs=185.9
Q ss_pred hhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 038936 5 LCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 81 (476)
+.+.|++++|++.++++. +.++.++..+..++.+.|++++|...++++++.. +-+..++..+..+|...|++++|+
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~ 87 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccc
Confidence 344555555555555542 3344455555555555555555555555554432 113344444455555555555555
Q ss_pred HHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchH
Q 038936 82 TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161 (476)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 161 (476)
..+....+.++ .+..............+....+......... ........
T Consensus 88 ~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 137 (388)
T d1w3ba_ 88 EHYRHALRLKP----------------------------DFIDGYINLAAALVAAGDMEGAVQAYVSALQ--YNPDLYCV 137 (388)
T ss_dssp HHHHHHHHHCT----------------------------TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HCTTCTHH
T ss_pred ccccccccccc----------------------------ccccccccccccccccccccccccccccccc--cccccccc
Confidence 55544433111 1111222222333333333343333333332 11122222
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc---cchhhHHHHHHHHHhc
Q 038936 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQE 238 (476)
Q Consensus 162 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 238 (476)
...........+....+...+....... +.+...+..+...+...|++++|...++...+ .+...+..+...+...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 216 (388)
T d1w3ba_ 138 RSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA 216 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred cccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhcc
Confidence 2222223333333444444444333332 33445556666667777777777777766543 2334566666666677
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHH
Q 038936 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318 (476)
Q Consensus 239 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 318 (476)
|++++|...+.+....+ +.+...+..+...+...|+++.|...+++..+.. +.+
T Consensus 217 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~------------------------ 270 (388)
T d1w3ba_ 217 RIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHF------------------------ 270 (388)
T ss_dssp TCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSC------------------------
T ss_pred ccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC------------------------
Confidence 77777777776666543 3344445555555556666666666665555442 222
Q ss_pred ccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChh
Q 038936 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398 (476)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 398 (476)
+.++..+...+...|++++|++.++...... +.+...+..+...+...|++++|++.++++.+. .|.+..
T Consensus 271 -------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 340 (388)
T d1w3ba_ 271 -------PDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAA 340 (388)
T ss_dssp -------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHH
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH
Confidence 3344445555555556666666665555542 334445555555666666666666666665532 223344
Q ss_pred hHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCC
Q 038936 399 HYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGN 444 (476)
Q Consensus 399 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 444 (476)
++..++.+|.+.|++++|++.|+++ ...| +...|..++.+|.+.||
T Consensus 341 ~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 341 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 5556666666666666666666653 4444 34456666666555553
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=5.6e-17 Score=141.43 Aligned_cols=249 Identities=11% Similarity=0.043 Sum_probs=176.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccc
Q 038936 199 ALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275 (476)
Q Consensus 199 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (476)
..+..+.+.|++++|+..|+++.+. ++.+|..+..++...|++++|...|.+..+.. +-+...+..+...+...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 4566778888888888888888553 34567788888888888888888888887764 3455667777777888888
Q ss_pred HHHHHHHHHHHHHhCCCCchh-hHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 276 EELGKQVHGYMTRIGYDPYSF-AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
++.|...++...... |+.. ......... ...+.......+..+...+.+.+|.+.+.+..+
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGA----------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhh----------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 888888888777653 2111 000000000 000111111122334455667889999988877
Q ss_pred cCC-CCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHH
Q 038936 355 SGT-QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFL 431 (476)
Q Consensus 355 ~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 431 (476)
... .++...+..+...+...|++++|+..++++... .+.+...+..++.+|.+.|++++|++.|+++ ...| +...
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 242 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHH
Confidence 542 235567788888999999999999999999875 3456778999999999999999999999986 4455 5678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 038936 432 WASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468 (476)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 468 (476)
|..++.+|...|++++|+..|+++++++|++...+..
T Consensus 243 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 279 (323)
T d1fcha_ 243 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 279 (323)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhh
Confidence 9999999999999999999999999999988765543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.1e-14 Score=126.65 Aligned_cols=227 Identities=14% Similarity=0.066 Sum_probs=147.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcC
Q 038936 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309 (476)
Q Consensus 230 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 309 (476)
.....+.+.|++++|...|+++++.. +.+..++..+..++...|+++.|...+.+..+.. |.+...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 44556777777777777777777654 3345566666666777777777777777766653 334444445555555555
Q ss_pred ChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
++++|.+.++.+...++...... ....... ...+.......+..+...+.+.+|.+.+.++..
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~--------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLV--------------TPAEEGA---GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGC--------------C------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHH--------------Hhhhhhh---hhcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 55555555444332111000000 0000000 000000111122234455678889999998887
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 038936 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYV 467 (476)
Q Consensus 390 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 467 (476)
..+..++..++..++..+...|++++|+..++++ ...| +...|..++..+...|++++|++.++++++++|+++.++.
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 244 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 244 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHH
Confidence 6455556778889999999999999999999996 3344 5778999999999999999999999999999999999999
Q ss_pred HHHHhhhc
Q 038936 468 TMANIYAS 475 (476)
Q Consensus 468 ~l~~~y~~ 475 (476)
.||.+|..
T Consensus 245 ~lg~~~~~ 252 (323)
T d1fcha_ 245 NLGISCIN 252 (323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999853
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.45 E-value=2.7e-13 Score=118.12 Aligned_cols=265 Identities=6% Similarity=-0.077 Sum_probs=189.0
Q ss_pred HHHHHcCCCHHHHHHHHHhhcccch---hhHHHHHHH----------HHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038936 201 SDMYGKCGSINEARQIFDKMVDRDV---VSWTAMIGR----------YFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267 (476)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 267 (476)
+......+..++|+.+++.+.+.++ ..|+..-.. +...|++++|+..++...+.. +.+...+..+.
T Consensus 36 ~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~ 114 (334)
T d1dcea1 36 FQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC 114 (334)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhh
Confidence 3333334445777777777754332 234332222 233455778888888888764 34555566555
Q ss_pred HHHhcc--ccHHHHHHHHHHHHHhCCCCchhhH-HHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCC
Q 038936 268 NACADH--AAEELGKQVHGYMTRIGYDPYSFAA-SALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGM 341 (476)
Q Consensus 268 ~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 341 (476)
.++... ++.+.+...+..+.+.. +++...+ ......+...+.+++|+..++.+.+ .+...|+.+...+.+.|+
T Consensus 115 ~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~ 193 (334)
T d1dcea1 115 WLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 193 (334)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 555554 45788999999888875 3444443 4455777888999999999998886 345678888899999999
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHh
Q 038936 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVIS 421 (476)
Q Consensus 342 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 421 (476)
+++|...+++..+. .|+.. .+...+...+..+++...+...... .+++...+..++..+...|+..+|...+.
T Consensus 194 ~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 266 (334)
T d1dcea1 194 QPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCKELQ 266 (334)
T ss_dssp CCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 98887776655542 22221 2333455667788888888888763 45566667778888999999999999998
Q ss_pred hC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 422 KM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 422 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
+. ...| +...+..++.++...|++++|++.++++++++|.++..|..|+..+.
T Consensus 267 ~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 267 ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 85 5566 45688889999999999999999999999999999999999987664
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=8e-12 Score=104.38 Aligned_cols=198 Identities=10% Similarity=-0.041 Sum_probs=118.6
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHHHHHhc
Q 038936 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIAGYAQN 339 (476)
Q Consensus 263 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~ 339 (476)
+..+...+.+.|+++.|...|+...+.. |.++.++..+..+|...|++++|+..|+++.+ | +..++..+..+|...
T Consensus 40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 118 (259)
T d1xnfa_ 40 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 118 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3344445556666666666666666554 44556666666667777777777777666653 2 345677788888888
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC----hhh
Q 038936 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR----FHE 415 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~ 415 (476)
|++++|+..|++..+.. +.+......+..++.+.+..+.+..+....... .+....+. +...+..... .+.
T Consensus 119 g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~ 193 (259)
T d1xnfa_ 119 GRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWN-IVEFYLGNISEQTLMER 193 (259)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHH-HHHHHTTSSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---chhhhhhh-HHHHHHHHHHHHHHHHH
Confidence 99999999999888864 233444444444555556555555554444432 22222222 2222222111 222
Q ss_pred HHHHHhhC-CCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 038936 416 AEDVISKM-PMKPD-KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATY 466 (476)
Q Consensus 416 A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 466 (476)
+...+... ...|+ ..+|..++..+...|++++|+..|+++++.+|++...|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 22222211 12232 34677788899999999999999999999999886554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.2e-10 Score=99.65 Aligned_cols=183 Identities=9% Similarity=0.069 Sum_probs=84.1
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccc-cHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChh
Q 038936 234 RYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA-AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312 (476)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 312 (476)
.+.+.+.+++|+.+++++++.. +-+...|+....++...| ++++|...++...+.. +.+..++..+..++.+.|+++
T Consensus 52 ~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l~~~~ 129 (315)
T d2h6fa1 52 VLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPS 129 (315)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCT
T ss_pred HHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHhhccHH
Confidence 3333444444444444444432 122223333333333332 2444444444444443 333444444444555555555
Q ss_pred hHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC------chhhHHHH
Q 038936 313 NSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG------LVDKGLQY 383 (476)
Q Consensus 313 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~a~~~ 383 (476)
+|+..++++.+ .+...|..+...+...|++++|+..++++++.+ +.+...|+.+...+.+.+ .+++|++.
T Consensus 130 eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~ 208 (315)
T d2h6fa1 130 QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 208 (315)
T ss_dssp THHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhHHhHHH
Confidence 55555554442 234455556666666666666666666666643 123344444444333322 24556666
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
+.++.+. .|.+...|..+...+... ..+++.+.++.
T Consensus 209 ~~~al~~--~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~ 244 (315)
T d2h6fa1 209 TLEMIKL--VPHNESAWNYLKGILQDR-GLSKYPNLLNQ 244 (315)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHTTT-CGGGCHHHHHH
T ss_pred HHHHHHh--CCCchHHHHHHHHHHHhc-ChHHHHHHHHH
Confidence 6666543 233444555554444332 24455554444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=2.5e-11 Score=103.92 Aligned_cols=209 Identities=11% Similarity=0.108 Sum_probs=165.4
Q ss_pred hhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcC-ChhhHHHHHccCCC---CChhhHHHHHHHH
Q 038936 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG-NVENSKKVFNGMPR---PDLVSWTSLIAGY 336 (476)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 336 (476)
..++.+...+.+.+..++|+.+++.+++.+ |.+...|+....++...| ++++|+..++.+.+ .+..+|..+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 345566666778889999999999999986 667778888888888876 58999999998764 4567899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC----
Q 038936 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR---- 412 (476)
Q Consensus 337 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 412 (476)
.+.|++++|++.++++++.. +.+...|..++..+...|++++|++.++++++. .+.+...|+.++.++.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchh
Confidence 99999999999999999864 346788999999999999999999999999975 24467778888888877776
Q ss_pred --hhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--chhHHHHHHhhh
Q 038936 413 --FHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN--PATYVTMANIYA 474 (476)
Q Consensus 413 --~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~y~ 474 (476)
+++|++.+.++ ...| +...|..+...+ .....+++.+.+++++++.|+. +..+..++.+|.
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGIL-QDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-TTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHH-HhcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 46788877775 4445 667777776654 4455789999999999988864 445566777664
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.31 E-value=2.6e-10 Score=97.46 Aligned_cols=187 Identities=11% Similarity=0.066 Sum_probs=146.9
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--C-C-hhhHHHHHHHHHhcCChHHHHHHH
Q 038936 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--P-D-LVSWTSLIAGYAQNGMPDKALEYF 349 (476)
Q Consensus 274 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~A~~~~ 349 (476)
+..+.+..+++...+...+.+...+...+..+.+.|+++.|..+|+.+.+ | + ...|...+..+.+.|+++.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888888887765556667777888888899999999999988764 2 2 346888888899999999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHH-HhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC----C
Q 038936 350 ELLLKSGTQPDHIVFVGVLTA-CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM----P 424 (476)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 424 (476)
+++++.+. .+...|...+.. +...|+.+.|..+|+++... .+.+...+..++..+.+.|+++.|..+|+++ +
T Consensus 158 ~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 99988653 233444433332 34568899999999999975 4566788999999999999999999999985 2
Q ss_pred CCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 038936 425 MKPD--KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 425 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 463 (476)
..|+ ...|...+......|+.+.+..+++++.+..|+..
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 3443 45788888887888999999999999999888764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=1.3e-09 Score=95.28 Aligned_cols=194 Identities=11% Similarity=0.000 Sum_probs=107.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhhcc-------c----chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC----CH
Q 038936 196 VWSALSDMYGKCGSINEARQIFDKMVD-------R----DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP----NA 260 (476)
Q Consensus 196 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~ 260 (476)
.+..+...+...|++..+...+..... + ....+..+...+...|+++.+...+.......... ..
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 172 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence 445566667777777777777766532 1 11234455667777788888887777766542211 12
Q ss_pred hhHHHHHHHHhccccHHHHHHHHHHHHHhCC---C-C--chhhHHHHHHHhhhcCChhhHHHHHccCCCC-------Chh
Q 038936 261 FTFAGVLNACADHAAEELGKQVHGYMTRIGY---D-P--YSFAASALVHMYSKCGNVENSKKVFNGMPRP-------DLV 327 (476)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~ 327 (476)
..+......+...++...+...+........ . + ....+..+...+...|++++|...++...+. ...
T Consensus 173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 252 (366)
T d1hz4a_ 173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 252 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence 2333444445566666666666655443310 1 1 1223344455566667777777766665531 112
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCcH-HHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKS----GTQPDH-IVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
.+..+...+...|++++|...+++.... +..|+. ..+..+..++...|++++|.+.++++.+
T Consensus 253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444566667777777777776665431 222322 3455556666667777777766666543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=7.4e-10 Score=96.92 Aligned_cols=257 Identities=11% Similarity=0.039 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhccc-----c----hhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC--
Q 038936 195 VVWSALSDMYGKCGSINEARQIFDKMVDR-----D----VVSWTAMIGRYFQEGRREEGFALFSELIKS----GIRPN-- 259 (476)
Q Consensus 195 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-- 259 (476)
..+..+...+...|++++|+..+++..+. + ...+..+...+...|++..+...+.+.... +..+.
T Consensus 52 ~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~ 131 (366)
T d1hz4a_ 52 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 131 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhH
Confidence 35666778888889999999998887431 1 234556677888999999999998876542 11111
Q ss_pred -HhhHHHHHHHHhccccHHHHHHHHHHHHHhCCC----CchhhHHHHHHHhhhcCChhhHHHHHccCC-------CC---
Q 038936 260 -AFTFAGVLNACADHAAEELGKQVHGYMTRIGYD----PYSFAASALVHMYSKCGNVENSKKVFNGMP-------RP--- 324 (476)
Q Consensus 260 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~--- 324 (476)
...+..+...+...|+++.+...+......... .....+......+...+++..+...+.... ..
T Consensus 132 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~ 211 (366)
T d1hz4a_ 132 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 211 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCch
Confidence 123445556778889999999999888765322 223344555666777788777766655433 21
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHhccCchhhHHHHHHHHHHh---cCCCC-Ch
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD---HIVFVGVLTACTHAGLVDKGLQYFHSIKEK---HGLTY-TA 397 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~ 397 (476)
....+..+...+...|++++|...+++........+ ...+..+..++...|++++|...++++... .+..| ..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 291 (366)
T d1hz4a_ 212 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN 291 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHH
Confidence 123456667778889999999999988765432222 235566788889999999999999887642 13333 34
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHhhC-------CCCC----cHHHHHHHHHHHHhcCChHHHHHH
Q 038936 398 DHYACIVDLLARSGRFHEAEDVISKM-------PMKP----DKFLWASLLGGCRIHGNLDLAKRA 451 (476)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p----~~~~~~~l~~~~~~~g~~~~A~~~ 451 (476)
..+..++.+|.+.|++++|.+.++++ +... ....+..++..+...++.+++.+.
T Consensus 292 ~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 292 RNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 56778889999999999999998875 1110 122344455556666777776554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=4e-10 Score=80.37 Aligned_cols=106 Identities=18% Similarity=0.133 Sum_probs=91.7
Q ss_pred HHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCC-CcHHHHHHHHHHHHhcCC
Q 038936 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMK-PDKFLWASLLGGCRIHGN 444 (476)
Q Consensus 367 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~ 444 (476)
-+..+...|++++|+..|+++++. .|.+...|..++.+|.+.|++++|+..++++ ... .+...|..++.++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 456678889999999999999875 3556778889999999999999999999886 333 477789999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 445 LDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 445 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
+++|+..|+++++++|+++.++..++++.+
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999999999999998765
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=1.4e-10 Score=100.68 Aligned_cols=229 Identities=7% Similarity=-0.051 Sum_probs=159.0
Q ss_pred cCCCHHHHHHHHHhhccc---chhhHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHhhHH-HHHHHHhccccHHHH
Q 038936 206 KCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEG--RREEGFALFSELIKSGIRPNAFTFA-GVLNACADHAAEELG 279 (476)
Q Consensus 206 ~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a 279 (476)
..|++++|+.+++...+. +...|..+..++...+ ++++|...+.++.+.. +++...+. .....+...+..+.|
T Consensus 85 ~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHH
Confidence 344567777777777543 3445666666665554 4678888888887764 33444443 344566677888889
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP 359 (476)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 359 (476)
...++.+.+.+ +.+...+..+..++...|++++|...++...+-.+... .....+...+..+++...+....... ++
T Consensus 164 l~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~a~~~~~~~l~~~-~~ 240 (334)
T d1dcea1 164 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL-ELVQNAFFTDPNDQSAWFYHRWLLGR-AE 240 (334)
T ss_dssp HHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHH-HHHHHHHHHCSSCSHHHHHHHHHHSC-CC
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHH-HHHHHHHHhcchhHHHHHHHHHHHhC-cc
Confidence 88888888776 56677888888899999999888776666554322222 23344566677888888888887764 34
Q ss_pred cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHH
Q 038936 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLG 437 (476)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~ 437 (476)
+...+..++..+...|+.++|...+.+.... .+.+...+..++.+|.+.|++++|++.++++ ...|+ ...|..+..
T Consensus 241 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~ 318 (334)
T d1dcea1 241 PLFRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 318 (334)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence 4445566677777888999999988887753 2345677888899999999999999999986 56674 445666655
Q ss_pred HHH
Q 038936 438 GCR 440 (476)
Q Consensus 438 ~~~ 440 (476)
.+.
T Consensus 319 ~~~ 321 (334)
T d1dcea1 319 KFL 321 (334)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=2.8e-10 Score=94.77 Aligned_cols=91 Identities=13% Similarity=-0.038 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc--c-cchHHHHHHHHHHh
Q 038936 28 IYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE--R-DVCSYNTMISGFTK 104 (476)
Q Consensus 28 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 104 (476)
+|..+..++.+.|++++|...|++.++.. +-++.+|..+..++...|++++|+..|+++.+ | +..++..+..++..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 45555666666677777777666666653 22455666666666666666666666666553 2 23455555555555
Q ss_pred cCCHHHHHHHHhcCC
Q 038936 105 GGSLEQARNLFDEMP 119 (476)
Q Consensus 105 ~g~~~~a~~~~~~~~ 119 (476)
.|++++|...|+...
T Consensus 118 ~g~~~~A~~~~~~al 132 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFY 132 (259)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 555555555555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.09 E-value=1.6e-08 Score=86.00 Aligned_cols=178 Identities=12% Similarity=0.101 Sum_probs=74.4
Q ss_pred HHHHHHHHhhcc----cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHH
Q 038936 211 NEARQIFDKMVD----RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286 (476)
Q Consensus 211 ~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 286 (476)
++|..+|++..+ .+...|...+..+...|+++.|..+|+++++.........|...+..+.+.|+.+.|..+++.+
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 444555554432 1223444445555555555555555555554321122234445555555555555555555555
Q ss_pred HHhCCCCchhhHHHHHHH-hhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCc-
Q 038936 287 TRIGYDPYSFAASALVHM-YSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG-TQPD- 360 (476)
Q Consensus 287 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~- 360 (476)
.+.+ +.+...+...... +...|+.+.|..+|+.+.+ .++..|...+..+.+.|+++.|..+|++..... ..|+
T Consensus 161 l~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~ 239 (308)
T d2onda1 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred HHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Confidence 4443 2222222222211 1222344444444443332 123334444444444444444444444444332 1111
Q ss_pred -HHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 361 -HIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 361 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
...|...+..-...|+.+.+..+++++.+
T Consensus 240 ~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 240 SGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12333333333344444444444444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=1.9e-09 Score=76.92 Aligned_cols=107 Identities=16% Similarity=0.033 Sum_probs=88.4
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC---hhhHHHHHhhC-CCCCcH---HHHHHHHH
Q 038936 365 VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR---FHEAEDVISKM-PMKPDK---FLWASLLG 437 (476)
Q Consensus 365 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~l~~ 437 (476)
..++..+...+++++|.+.|+++... -|.++.++..++.++.+.++ +++|+++++++ ...|+. .+|..++.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 34677788899999999999999975 36677889999999987655 45699999985 444433 37888999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 438 GCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 438 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
+|...|++++|++.|+++++++|+|..+...+..+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 999999999999999999999999999888877664
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=4.9e-09 Score=82.05 Aligned_cols=121 Identities=8% Similarity=0.013 Sum_probs=86.9
Q ss_pred HHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHH
Q 038936 302 VHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381 (476)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 381 (476)
...+...|+++.|++.|.++..+++.+|..+..+|...|++++|++.|++.++.+ +.+...|..+..++.+.|++++|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4456778889999999988888888888888888999999999999999988865 345567888888888999999999
Q ss_pred HHHHHHHHhcCCCCC--------------hhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 382 QYFHSIKEKHGLTYT--------------ADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 382 ~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
..|+++.....-.+. ..++..++.++.+.|++++|.+.++.+
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A 146 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888888753111100 123344555555555555555555543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.92 E-value=1.9e-09 Score=85.71 Aligned_cols=102 Identities=8% Similarity=-0.100 Sum_probs=55.3
Q ss_pred CcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHH
Q 038936 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLL 436 (476)
Q Consensus 359 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 436 (476)
|+...+...+..+.+.|++++|+..|+++++. .|.+...|..++.+|.+.|++++|+..|+++ ...| +...|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 44444444555555555555555555555543 2334445555555555555555555555553 3344 344555555
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 437 GGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 437 ~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
.++...|++++|+..|+++++++|++
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 55555666666666666665555543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=1.4e-08 Score=76.95 Aligned_cols=100 Identities=11% Similarity=0.061 Sum_probs=49.5
Q ss_pred HHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChH
Q 038936 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLD 446 (476)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 446 (476)
..|.+.|++++|+..|+++.+. .|.+...|..++.+|...|++++|++.|+++ ...| +...|..++.++...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 3344555555555555555543 1334444555555555555555555555543 2222 3345555555555555555
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHH
Q 038936 447 LAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 447 ~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
+|+..++++++++|+++.++..+.
T Consensus 96 eA~~~~~~a~~~~p~~~~~~~~l~ 119 (159)
T d1a17a_ 96 AALRDYETVVKVKPHDKDAKMKYQ 119 (159)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH
Confidence 555555555555555555544443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=4.6e-08 Score=76.35 Aligned_cols=129 Identities=10% Similarity=-0.055 Sum_probs=106.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 038936 333 IAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412 (476)
Q Consensus 333 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 412 (476)
...+...|++++|++.|+++ .+|+..++..+..++...|++++|++.|+++++. -+.....|..++.++.+.|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhcc
Confidence 56688999999999999864 3577788889999999999999999999999975 35567789999999999999
Q ss_pred hhhHHHHHhhC----CCC-------------Cc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 038936 413 FHEAEDVISKM----PMK-------------PD-KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYV 467 (476)
Q Consensus 413 ~~~A~~~~~~~----~~~-------------p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 467 (476)
+++|++.|+++ +.. ++ ..++..++.++...|++++|.+.+++++++.|+......
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~ 158 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKI 158 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHH
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHH
Confidence 99999998874 111 11 345677888899999999999999999999887544443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=2.6e-08 Score=76.07 Aligned_cols=75 Identities=12% Similarity=0.083 Sum_probs=63.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 399 HYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 399 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
+|..++.+|.+.|++++|+..++++ ...| ++..|..++.++...|++++|+..|+++++++|+|+.+...++.++
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4667888888999999999988885 4445 6778888899999999999999999999999999998888887765
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.85 E-value=4.1e-08 Score=82.65 Aligned_cols=194 Identities=9% Similarity=-0.018 Sum_probs=119.7
Q ss_pred HHHhccccHHHHHHHHHHHHHh----CCC-CchhhHHHHHHHhhhcCChhhHHHHHccCCC-----CC----hhhHHHHH
Q 038936 268 NACADHAAEELGKQVHGYMTRI----GYD-PYSFAASALVHMYSKCGNVENSKKVFNGMPR-----PD----LVSWTSLI 333 (476)
Q Consensus 268 ~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~ 333 (476)
..|...+++++|...|.++.+. +-+ ....+|..+..+|.+.|++++|...+++..+ .+ ..++..+.
T Consensus 45 ~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 124 (290)
T d1qqea_ 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (290)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHH
Confidence 3445555666666666555443 111 1134556666667777777777766665542 11 23455566
Q ss_pred HHHHh-cCChHHHHHHHHHHHHc----CCCCc-HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCCh-----hhHHH
Q 038936 334 AGYAQ-NGMPDKALEYFELLLKS----GTQPD-HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA-----DHYAC 402 (476)
Q Consensus 334 ~~~~~-~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~ 402 (476)
..|.. .|++++|++.+++..+. +..+. ..++..++..+...|++++|++.|+++.......+.. ..+..
T Consensus 125 ~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (290)
T d1qqea_ 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (290)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHH
Confidence 66644 58899999998887642 21111 2357778888999999999999999988642222211 12345
Q ss_pred HHHHHHhcCChhhHHHHHhhC-CCCCc------HHHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCC
Q 038936 403 IVDLLARSGRFHEAEDVISKM-PMKPD------KFLWASLLGGCRIH--GNLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 403 l~~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~p~ 461 (476)
.+..+...|+++.|.+.+++. ...|. ......++.++... +.+++|+..|+++.+++|-
T Consensus 205 ~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~ 272 (290)
T d1qqea_ 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (290)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHH
Confidence 566777889999999999886 33332 22445566665542 4588888888887777763
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.71 E-value=1.3e-07 Score=70.70 Aligned_cols=125 Identities=12% Similarity=-0.026 Sum_probs=90.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (476)
.+...+..+.+.|++.+|+..|.+.+..- |... ... +........ .....++..++.+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~-~~~~~~~~~-------~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWD-DQILLDKKK-------NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCC-CHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhh-hHHHHHhhh-------hHHHHHHhhHHHHH
Confidence 45555666778888888888888777531 1100 000 000000000 01234577899999
Q ss_pred HhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 408 ARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 408 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
.+.|++++|++.++++ ...| +..+|..++.++...|++++|+..|+++++++|+|+.+...+..+.
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999996 4445 7789999999999999999999999999999999999998887764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.70 E-value=1.2e-06 Score=73.48 Aligned_cols=131 Identities=12% Similarity=0.040 Sum_probs=61.1
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHHhhccc-----c----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh----
Q 038936 196 VWSALSDMYG-KCGSINEARQIFDKMVDR-----D----VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAF---- 261 (476)
Q Consensus 196 ~~~~l~~~~~-~~~~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 261 (476)
++..+...|. ..|++++|+..+++..+- + ..++..+...+...|++++|...|+++..........
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 3444455553 346777777666665321 1 1235556666667777777777776665542111110
Q ss_pred --hHHHHHHHHhccccHHHHHHHHHHHHHhCCC-Cc---hhhHHHHHHHhhh--cCChhhHHHHHccCCCCCh
Q 038936 262 --TFAGVLNACADHAAEELGKQVHGYMTRIGYD-PY---SFAASALVHMYSK--CGNVENSKKVFNGMPRPDL 326 (476)
Q Consensus 262 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~ 326 (476)
.+...+..+...|+++.|...++...+.... ++ ......++.++.. .+.+++|+..|+.+.+-|.
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 1122222334455666666666555443211 01 1122333444333 2235555555555555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=3.2e-07 Score=64.82 Aligned_cols=103 Identities=17% Similarity=0.102 Sum_probs=81.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 038936 331 SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410 (476)
Q Consensus 331 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 410 (476)
.-+..+.+.|++++|+..|++.++.. +.+...|..+..++...|++++|+..+.++.+. .+.+...|..++.++...
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHh--ccchhhHHHHHHHHHHHc
Confidence 34667888999999999999998864 446677888888999999999999999999875 356778889999999999
Q ss_pred CChhhHHHHHhhC-CCCCc-HHHHHHHH
Q 038936 411 GRFHEAEDVISKM-PMKPD-KFLWASLL 436 (476)
Q Consensus 411 g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 436 (476)
|++++|+..|+++ ...|+ ...+..+.
T Consensus 85 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 112 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKHEANNPQLKEGLQ 112 (117)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999986 55564 33444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.67 E-value=9.8e-08 Score=72.88 Aligned_cols=125 Identities=13% Similarity=0.065 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 038936 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408 (476)
Q Consensus 329 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 408 (476)
+......+...|++++|+..|.++++. .+.. .......+... -.+.....+..++.++.
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~~----------~~~~~~~~~~~---------~~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADGAK---------LQPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHHGG---------GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--hhhh----------hhhhhhHHHHH---------hChhhHHHHHHHHHHHH
Confidence 444556677778888888777776541 0000 00000000000 01224456778899999
Q ss_pred hcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 409 RSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 409 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
+.|++++|+..++++ ...| +...|..++.++...|++++|+..|+++++++|+|+.++..|..++.
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999996 5555 67799999999999999999999999999999999999999887753
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.64 E-value=3.1e-07 Score=69.86 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHhhC-CCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 399 HYACIVDLLARSGRFHEAEDVISKM-PMK-PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 399 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
+|..++.+|.+.|++++|+..++++ ... .+...|..++.++...|++++|+..|+++++++|+|+.+...++.+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4566777888888888888888875 333 36678888888888888888888888888888888888887777654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=5.5e-07 Score=67.77 Aligned_cols=119 Identities=13% Similarity=0.035 Sum_probs=85.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 038936 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR 409 (476)
Q Consensus 330 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 409 (476)
......|.+.|++++|+..|++.++.+ +.+...|..+..+|...|++++|++.|+++++. .+.+...|..++.++..
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--cccchHHHHHHHHHHHH
Confidence 345667888899999999999988865 345667888888888999999999999988865 35566788888999999
Q ss_pred cCChhhHHHHHhhC-CCCC-cHHHHHHHHHHH--HhcCChHHHHHH
Q 038936 410 SGRFHEAEDVISKM-PMKP-DKFLWASLLGGC--RIHGNLDLAKRA 451 (476)
Q Consensus 410 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~--~~~g~~~~A~~~ 451 (476)
.|++++|.+.++++ ...| +...+..+..+. ...+.+++|...
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999988886 3344 344444443332 233445555544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=2e-07 Score=62.90 Aligned_cols=75 Identities=13% Similarity=0.076 Sum_probs=58.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHhhC--------CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 038936 399 HYACIVDLLARSGRFHEAEDVISKM--------PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTM 469 (476)
Q Consensus 399 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 469 (476)
....++..+.+.|++++|+..|+++ ...+ ...++..++.++.+.|++++|+..++++++++|+++.++.+|
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 3445666666777777766666654 0112 255788999999999999999999999999999999999999
Q ss_pred HHhh
Q 038936 470 ANIY 473 (476)
Q Consensus 470 ~~~y 473 (476)
+.+.
T Consensus 87 ~~~~ 90 (95)
T d1tjca_ 87 KYFE 90 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.44 E-value=1e-06 Score=69.33 Aligned_cols=96 Identities=9% Similarity=-0.022 Sum_probs=75.3
Q ss_pred CchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHH
Q 038936 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP-DHIVFVGVL 368 (476)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~ 368 (476)
|+...+......|.+.|++++|+..|+++.+ .++..|..+..+|.+.|++++|+..|++.++. .| +..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHHH
Confidence 5556666777888888888888888887663 45667888888888888888888888888774 34 456777888
Q ss_pred HHHhccCchhhHHHHHHHHHHh
Q 038936 369 TACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
.++...|++++|+..|+++.+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 8888888888888888887753
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.44 E-value=6.9e-07 Score=62.45 Aligned_cols=88 Identities=6% Similarity=-0.127 Sum_probs=47.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 038936 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG 411 (476)
Q Consensus 332 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 411 (476)
+...+.+.|++++|+..|++.++.. +-+...|..+..++.+.|++++|+..++++.+. .|.+...+..++.+|...|
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHCC
Confidence 3445555566666666666655543 123445555555556666666666666655543 2334455555555555555
Q ss_pred ChhhHHHHHhh
Q 038936 412 RFHEAEDVISK 422 (476)
Q Consensus 412 ~~~~A~~~~~~ 422 (476)
++++|++.+++
T Consensus 99 ~~~~A~~~l~~ 109 (112)
T d1hxia_ 99 NANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 55555555544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.43 E-value=3.8e-05 Score=63.02 Aligned_cols=229 Identities=13% Similarity=-0.000 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhhccc-chhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 038936 194 EVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVSWTAMIGRYFQ----EGRREEGFALFSELIKSGIRPNAFTFAGVLN 268 (476)
Q Consensus 194 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 268 (476)
+..+..|...+.+.+++++|+++|++..+. +...+..|...|.. ..+...|...+......+. | .....+..
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~-~--~a~~~l~~ 78 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-S--NGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-H--HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc-c--chhhcccc
Confidence 345555666667777777777777776443 44455555555554 4456666666666665541 1 22222221
Q ss_pred HH----hccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHH
Q 038936 269 AC----ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK 344 (476)
Q Consensus 269 ~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 344 (476)
.+ ....+.+.|...++...+.|.... ...+...+... .........
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~---------------------------~~~~~~~~~ 128 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDG---------------------------KVVTRDFKK 128 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHC---------------------------SSSCCCHHH
T ss_pred ccccccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCC---------------------------CcccchhHH
Confidence 11 123455566666665555442111 11111111110 001223344
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhc----cCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhhH
Q 038936 345 ALEYFELLLKSGTQPDHIVFVGVLTACTH----AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR----SGRFHEA 416 (476)
Q Consensus 345 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 416 (476)
+...+.+.... .+...+..+...+.. ..+...+..+++...+. .+......++..|.. ..+.++|
T Consensus 129 a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~~A 201 (265)
T d1ouva_ 129 AVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEA 201 (265)
T ss_dssp HHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred HHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccccchhhh
Confidence 44444444442 233344444444443 33445555555555432 244455556555554 4466777
Q ss_pred HHHHhhCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCC
Q 038936 417 EDVISKMPMKPDKFLWASLLGGCRI----HGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 417 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~ 462 (476)
+..|++....-++..+..++..|.. ..+.++|.+.|+++.+..+.+
T Consensus 202 ~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 202 LARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred hhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 7777765222345555556665554 236777888887777776543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.43 E-value=3.9e-07 Score=63.77 Aligned_cols=89 Identities=12% Similarity=0.016 Sum_probs=65.8
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcC
Q 038936 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHG 443 (476)
Q Consensus 366 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 443 (476)
.++..+.+.|++++|+..|+++... .|-+...|..++.++.+.|++++|+..|+++ ...| +...|..++.+|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 3566677788888888888888765 2445677778888888888888888888775 4444 5667777887888888
Q ss_pred ChHHHHHHHHHHH
Q 038936 444 NLDLAKRAAEALF 456 (476)
Q Consensus 444 ~~~~A~~~~~~~~ 456 (476)
++++|++.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 8888888887764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=6.7e-08 Score=87.90 Aligned_cols=109 Identities=8% Similarity=-0.046 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHH
Q 038936 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGC 439 (476)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 439 (476)
..+..+...+.+.|+.+.|...+++.... . ...++..++.++...|++++|+..++++ ...| +...|+.++..+
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~-~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSY---I-CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILA 196 (497)
T ss_dssp ----------------------CCHHHHH---H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCC---C-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 34555555666666666666666555432 1 1235566677777777777777777765 3444 445677777777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 440 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
...|+..+|+..|.+++..+|+.+.++.+|+.+|.
T Consensus 197 ~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 77777777777777777777777777777776653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=2e-06 Score=61.71 Aligned_cols=92 Identities=9% Similarity=0.008 Sum_probs=44.5
Q ss_pred HHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-------c-HHHHHHHHHH
Q 038936 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-------D-KFLWASLLGG 438 (476)
Q Consensus 368 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~-~~~~~~l~~~ 438 (476)
...+...|++++|++.|+++++. .|.+...+..++.+|.+.|++++|++.++++ ...| . ..+|..++..
T Consensus 11 G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 11 GNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444432 1223334444444444444444444444442 0000 0 1244556666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC
Q 038936 439 CRIHGNLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~~p~ 461 (476)
+...+++++|+..|++++..+|+
T Consensus 89 ~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCCC
Confidence 66667777777777777776653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.38 E-value=0.00012 Score=59.84 Aligned_cols=92 Identities=10% Similarity=0.034 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHcccc-cchHHHHHH
Q 038936 25 SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK----CGNISDAQTLFDEMQER-DVCSYNTMI 99 (476)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~ 99 (476)
||..+..+...+.+.+++++|.++|++..+.| +...+..|...|.. ..+...|...++...++ ++.....+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccc
Confidence 56677777777888888999999998888876 55566666666665 45777777777776553 334444444
Q ss_pred HHHHh----cCCHHHHHHHHhcCC
Q 038936 100 SGFTK----GGSLEQARNLFDEMP 119 (476)
Q Consensus 100 ~~~~~----~g~~~~a~~~~~~~~ 119 (476)
..+.. .++.+.|...++...
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~ 101 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKAC 101 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhh
Confidence 44332 345555655555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=3.4e-07 Score=64.87 Aligned_cols=99 Identities=11% Similarity=0.044 Sum_probs=71.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc---CchhhHHHHHHHHHHhcCCCCC-hhhHHHHHH
Q 038936 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA---GLVDKGLQYFHSIKEKHGLTYT-ADHYACIVD 405 (476)
Q Consensus 330 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~ 405 (476)
..++..+...+++++|++.|++.+..+ +.+..++..++.++.+. +++++|+.+++++... ...|+ ..++..++.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHH
Confidence 356777788888888999998888865 44667777788887764 4555788888887753 11122 346778888
Q ss_pred HHHhcCChhhHHHHHhhC-CCCCcHH
Q 038936 406 LLARSGRFHEAEDVISKM-PMKPDKF 430 (476)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~-~~~p~~~ 430 (476)
+|.+.|++++|++.|+++ ...|+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~ 106 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNN 106 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCH
Confidence 888999999999888886 5556433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1.3e-07 Score=85.88 Aligned_cols=167 Identities=10% Similarity=-0.049 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHH--HhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHc
Q 038936 242 EEGFALFSELIKSGIRPNAFTFAGVLNA--CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFN 319 (476)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 319 (476)
..+.+.++...+....++.......+.. ....+.++.++..+....+.. +++...+..+...+.+.|+.++|...++
T Consensus 66 ~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 144 (497)
T d1ya0a1 66 KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQS 144 (497)
T ss_dssp HHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CC
T ss_pred HHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHH
Confidence 3455555555544333333322222211 122344555555444433332 3445566777788888888888887776
Q ss_pred cCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChh
Q 038936 320 GMPRPDL-VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398 (476)
Q Consensus 320 ~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 398 (476)
...+++. .++..++..+...|++++|+..|++..+.. +-+...|+.++..+...|+..+|+..|.+.... .+|-..
T Consensus 145 ~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~--~~~~~~ 221 (497)
T d1ya0a1 145 SSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV--KFPFPA 221 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SBCCHH
T ss_pred HHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCHH
Confidence 6655443 467778888999999999999999999864 345578999999999999999999999999863 467777
Q ss_pred hHHHHHHHHHhcCC
Q 038936 399 HYACIVDLLARSGR 412 (476)
Q Consensus 399 ~~~~l~~~~~~~g~ 412 (476)
.+..|...+.+..+
T Consensus 222 a~~nL~~~~~~~~~ 235 (497)
T d1ya0a1 222 ASTNLQKALSKALE 235 (497)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhh
Confidence 88888888876554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=5.6e-06 Score=62.74 Aligned_cols=110 Identities=10% Similarity=-0.015 Sum_probs=71.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCC-----C---------cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC
Q 038936 331 SLIAGYAQNGMPDKALEYFELLLKSGTQ-----P---------DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396 (476)
Q Consensus 331 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 396 (476)
..+..+.+.|++++|+..|++.++.... . ...+|..+..+|.+.|++++|+..+++++.. -|.+
T Consensus 18 ~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~--~p~~ 95 (170)
T d1p5qa1 18 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNN 95 (170)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc--cccc
Confidence 3444556666666666666665543110 0 1134566777788888888888888888865 2447
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhc
Q 038936 397 ADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIH 442 (476)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 442 (476)
+..+..++.+|...|++++|+..|+++ ...| +......+.......
T Consensus 96 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 96 EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 778888888888888888888888886 4445 444444444444333
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.30 E-value=4.6e-07 Score=66.69 Aligned_cols=114 Identities=13% Similarity=0.084 Sum_probs=65.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC----------chhhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 038936 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG----------LVDKGLQYFHSIKEKHGLTYTADHYACIVD 405 (476)
Q Consensus 336 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (476)
|-+.+.+++|+..|++..+.. +.+...+..+..++...+ .+++|+..|+++++. -|.+...|..++.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHHH
Confidence 344555667777777766653 334455555665555332 334455555555542 1333444555555
Q ss_pred HHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 406 LLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
+|...|++. ++... ..+++++|.+.|+++++++|++...+..|+...
T Consensus 84 ~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 84 AYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 130 (145)
T ss_dssp HHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence 554443221 01000 112468899999999999999999988887654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.28 E-value=0.00072 Score=56.46 Aligned_cols=136 Identities=11% Similarity=0.037 Sum_probs=62.0
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHH
Q 038936 121 RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSAL 200 (476)
Q Consensus 121 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 200 (476)
+|..-...+.+.|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+..... + +..+|..+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d----------~~rl~~~~v~l~~~~~avd~~~k~---~---~~~~~k~~ 75 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGARKA---N---STRTWKEV 75 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC----------HHHHHHHHHTTTCHHHHHHHHHHH---T---CHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC----------HHHHHHHHHhhccHHHHHHHHHHc---C---CHHHHHHH
Confidence 3444445566667777777777777776664 555666666666666655554432 1 33355555
Q ss_pred HHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccc
Q 038936 201 SDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA 274 (476)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 274 (476)
...+.+.....-+.-+ ......++.....++..|-..|.++....++....... .++...++.++..+++.+
T Consensus 76 ~~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 76 CFACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 5555555544333111 11111222333445566666666666666666554321 344445555555555543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=5.2e-06 Score=59.45 Aligned_cols=102 Identities=13% Similarity=0.029 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC-----hhhHHHH
Q 038936 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT-----ADHYACI 403 (476)
Q Consensus 329 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l 403 (476)
+..++..+.+.|++++|+..|++.++.+ +.+...+..+..+|...|++++|++.++++++...-.+. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4456777888888999999988888864 345677888888888889999999888888764211121 1356667
Q ss_pred HHHHHhcCChhhHHHHHhhC-CCCCcHHH
Q 038936 404 VDLLARSGRFHEAEDVISKM-PMKPDKFL 431 (476)
Q Consensus 404 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 431 (476)
+..+...+++++|++.|++. ...|+...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~~~~~~~ 114 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAEHRTPDV 114 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCHHH
Confidence 77788888888888888774 33344433
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.19 E-value=2.5e-06 Score=69.48 Aligned_cols=130 Identities=8% Similarity=-0.026 Sum_probs=96.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 038936 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414 (476)
Q Consensus 335 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 414 (476)
-..+.|++++|+..+++.++.. +-|...+..++..++..|++++|.+.++.+.+. .+.+...+..+...+...+..+
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccH
Confidence 3457899999999999999974 446688899999999999999999999999975 2334555666666666555555
Q ss_pred hHHHHHhhC--CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 038936 415 EAEDVISKM--PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYV 467 (476)
Q Consensus 415 ~A~~~~~~~--~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 467 (476)
++..-.... ...| +...+...+..+...|+.++|...++++.+..|..+..++
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 544433331 2233 3344555566677889999999999999999998876554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.16 E-value=9.8e-06 Score=60.38 Aligned_cols=94 Identities=19% Similarity=-0.005 Sum_probs=60.0
Q ss_pred HHhccCchhhHHHHHHHHHHhcCCCCC----------hhhHHHHHHHHHhcCChhhHHHHHhhC--------CCCCc---
Q 038936 370 ACTHAGLVDKGLQYFHSIKEKHGLTYT----------ADHYACIVDLLARSGRFHEAEDVISKM--------PMKPD--- 428 (476)
Q Consensus 370 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~--- 428 (476)
.+...|++++|++.|++.++-....|+ ...|..++.+|.+.|++++|.+.+++. ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344556666666666665543222222 234556666777777777776666553 11221
Q ss_pred --HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 038936 429 --KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 429 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 463 (476)
...+..++.+|...|++++|+..|++++++.|+..
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 23567788999999999999999999999876543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.16 E-value=0.0013 Score=54.80 Aligned_cols=137 Identities=9% Similarity=0.040 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHH
Q 038936 23 HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGF 102 (476)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 102 (476)
.||..--..++..|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+.+.+. .+..+|..+...+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l 79 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFAC 79 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHH
Confidence 56666666778888899999999999875433 667788888889999888887753 4567888888888
Q ss_pred HhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhh
Q 038936 103 TKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQ 173 (476)
Q Consensus 103 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 173 (476)
.+.....-+.-+ ......++.....++..|-..|.+++...+++.... ...++...++.++..+++.+
T Consensus 80 ~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~--~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 80 VDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTC
T ss_pred HhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHc--CCccchHHHHHHHHHHHHhC
Confidence 877766554332 222223444556778888888999988888887753 23445556666777666643
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.00 E-value=4.5e-05 Score=56.34 Aligned_cols=108 Identities=8% Similarity=-0.041 Sum_probs=57.2
Q ss_pred hHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 038936 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMP-DKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375 (476)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 375 (476)
.+..-...+.+.|++.+|+..|.++.+- +...... +.... ..... ....+|..+..+|.+.|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~-----------~~~~~~~~~~~~~--~~~~~----~~~~~~~Nla~~~~~l~ 81 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDF-----------FIHTEEWDDQILL--DKKKN----IEISCNLNLATCYNKNK 81 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT-----------TTTCTTCCCHHHH--HHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------CcchhhhhhHHHH--Hhhhh----HHHHHHhhHHHHHHHhc
Confidence 3455667888999999999998765420 0000000 00000 00000 01234445555566666
Q ss_pred chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
++++|++.++++++. .|.+...|..++.++...|++++|+..|+++
T Consensus 82 ~~~~Al~~~~~al~~--~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~a 127 (153)
T d2fbna1 82 DYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKA 127 (153)
T ss_dssp CHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ccchhhhhhhccccc--cchhhhhhHHhHHHHHHcCCHHHHHHHHHHH
Confidence 666666666666543 2344555666666666666666666666654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.98 E-value=7.3e-05 Score=56.23 Aligned_cols=129 Identities=9% Similarity=0.009 Sum_probs=83.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc---CCCC-----------cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC
Q 038936 330 TSLIAGYAQNGMPDKALEYFELLLKS---GTQP-----------DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395 (476)
Q Consensus 330 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 395 (476)
...+..+.+.|++.+|+..|++.+.. ...+ ...+|..+..+|.+.|++++|+..+++++.. .|.
T Consensus 19 ~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l--~p~ 96 (168)
T d1kt1a1 19 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL--DSA 96 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc--ccc
Confidence 33445555566666666666554431 0111 1124556777888899999999999998875 366
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCC
Q 038936 396 TADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNL-DLAKRAAEALFEIEP 460 (476)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p 460 (476)
+...|..++.+|...|++++|+..|+++ ...| +......+.......+.. +...+.+.++++.-+
T Consensus 97 ~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~~~~ 164 (168)
T d1kt1a1 97 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKFA 164 (168)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Confidence 7788888999999999999999999886 4455 444555555444444433 345666666666443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.95 E-value=9.1e-05 Score=55.77 Aligned_cols=105 Identities=7% Similarity=-0.022 Sum_probs=64.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHhhcc-------------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 038936 199 ALSDMYGKCGSINEARQIFDKMVD-------------------RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN 259 (476)
Q Consensus 199 ~l~~~~~~~~~~~~a~~~~~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 259 (476)
.....+...|++++|+..|.+..+ .....+..+..++.+.|++++|+..+.+.++.. +.+
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~ 110 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSN 110 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhh
Confidence 345556667777777777765532 122345556667777777777777777777654 345
Q ss_pred HhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHh
Q 038936 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMY 305 (476)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (476)
...|..+..++...|+++.|...|+...+.. |.+..+...+..+.
T Consensus 111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 111 TKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 5566666667777777777777777777664 33444444444433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.75 E-value=9.5e-06 Score=59.41 Aligned_cols=80 Identities=18% Similarity=0.158 Sum_probs=56.2
Q ss_pred HhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHH
Q 038936 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKR 450 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 450 (476)
|.+.+.+++|++.|+++.+. .|.+...+..++.+|...+++..+.+ ..+.+++|+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai~ 62 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAIT 62 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHHH
Confidence 34556677777777777654 24456666666666665555544433 1245678999
Q ss_pred HHHHHHHcCCCCchhHHHHHHhhh
Q 038936 451 AAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 451 ~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
.|+++++++|+++.+|.++|.+|.
T Consensus 63 ~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 63 KFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhHHHhhHHHHHH
Confidence 999999999999999999999885
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.68 E-value=0.00079 Score=50.74 Aligned_cols=72 Identities=15% Similarity=0.054 Sum_probs=58.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHH-----hCCCCchhh
Q 038936 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR-----IGYDPYSFA 297 (476)
Q Consensus 225 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 297 (476)
...+..+...+...|++++|+..++++.+.. +-+...|..++.++...|+.++|.+.|+.+.+ .|+.|+..+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 3456778888889999999999999988875 56778888999999999999999988888743 588887654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.66 E-value=0.00054 Score=51.66 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=57.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH----hcCCCCChhhH
Q 038936 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE----KHGLTYTADHY 400 (476)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 400 (476)
...+..+...+...|++++|+..++++++.. +-+...|..++.++...|+..+|++.|+++.. ..|+.|+..+-
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 3456677888888888888888888888864 34667788888888888998888888887643 35788876553
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.58 E-value=0.00017 Score=53.34 Aligned_cols=96 Identities=18% Similarity=0.111 Sum_probs=70.6
Q ss_pred hHHHH--HHHHHhcCChHHHHHHHHHHHHcCCC-C----------cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC--
Q 038936 328 SWTSL--IAGYAQNGMPDKALEYFELLLKSGTQ-P----------DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG-- 392 (476)
Q Consensus 328 ~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~-~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 392 (476)
+|..+ ...+...|++++|+..|++.++.... | ...+|..+..+|...|++++|.+.+++...-..
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 45555 44567789999999999998763211 1 135688889999999999999999998875311
Q ss_pred --CCCC-----hhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 393 --LTYT-----ADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 393 --~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
..++ ...+..++.+|...|++++|+..|+++
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~A 126 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 126 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 1111 224677899999999999999999875
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.53 E-value=0.024 Score=49.68 Aligned_cols=165 Identities=10% Similarity=0.060 Sum_probs=78.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cCChHHHHHHHHHccc-c-cchHHHHHHHHHHhcCCHH
Q 038936 34 QFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK--CGNISDAQTLFDEMQE-R-DVCSYNTMISGFTKGGSLE 109 (476)
Q Consensus 34 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~ 109 (476)
.-..+.|+...+.++...+.+ . | ...|...-..-.. .....+...+++.-.. | .......-+..+.+.++++
T Consensus 14 ~~a~~~~~~~~~~~~~~~L~d--y-p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~ 89 (450)
T d1qsaa1 14 KQAWDNRQMDVVEQMMPGLKD--Y-P-LYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWR 89 (450)
T ss_dssp HHHHHTTCHHHHHHHSGGGTT--S-T-THHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHhhhcC--C-C-CHHHHHHHHHHhccccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHH
Confidence 344566677766666665532 2 2 2333333222222 2344444444444222 1 0112223355566777777
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcC
Q 038936 110 QARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189 (476)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 189 (476)
.....+...+ .+...-.....+....|+.++|.+.+..+-......|+. +..++..+.+.|
T Consensus 90 ~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~------------------c~~l~~~~~~~~ 150 (450)
T d1qsaa1 90 GLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNA------------------CDKLFSVWRASG 150 (450)
T ss_dssp HHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTH------------------HHHHHHHHHHTT
T ss_pred HHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchH------------------HHHHHHHHHhcC
Confidence 6665443321 133334455667777788888877777666433333332 222333333333
Q ss_pred CCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc
Q 038936 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVD 222 (476)
Q Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 222 (476)
..+...+-.-+......|+...|..+...+..
T Consensus 151 -~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~ 182 (450)
T d1qsaa1 151 -KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPA 182 (450)
T ss_dssp -CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG
T ss_pred -CCCHHHHHHHHHHHHHcCChhhHHHHHhhCCh
Confidence 22233333344444555666666666655443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.41 E-value=0.00027 Score=57.20 Aligned_cols=118 Identities=13% Similarity=0.019 Sum_probs=57.8
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHH
Q 038936 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315 (476)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (476)
.+.|++++|+..+++.++.. +.|...+..+...++..|++++|...++...+.. +.+...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHH
Confidence 34566666666666666553 3445556666666666666666666666665553 222333333333333333333222
Q ss_pred HHHccC-C--CCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038936 316 KVFNGM-P--RPD-LVSWTSLIAGYAQNGMPDKALEYFELLLKS 355 (476)
Q Consensus 316 ~~~~~~-~--~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 355 (476)
.-.... . .|+ ...+......+...|+.++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 211110 0 111 122233344466667777777777666653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.35 E-value=0.0012 Score=45.13 Aligned_cols=77 Identities=21% Similarity=0.139 Sum_probs=59.6
Q ss_pred CCChhhHHHHHHHHHhcCC---hhhHHHHHhhC-CCCC-cH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 038936 394 TYTADHYACIVDLLARSGR---FHEAEDVISKM-PMKP-DK-FLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYV 467 (476)
Q Consensus 394 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 467 (476)
.++..+-..+++++.+..+ .++++.+|+++ ...| +. ..+..++.+|.+.|++++|.+.++++++++|+|..+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 4566677778888887654 56788888886 3334 33 46778888899999999999999999999999987765
Q ss_pred HHH
Q 038936 468 TMA 470 (476)
Q Consensus 468 ~l~ 470 (476)
..-
T Consensus 112 L~~ 114 (124)
T d2pqrb1 112 LKS 114 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.00062 Score=45.08 Aligned_cols=59 Identities=19% Similarity=0.027 Sum_probs=26.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-----CCCc-HHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 331 SLIAGYAQNGMPDKALEYFELLLKSG-----TQPD-HIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 331 ~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
.++..+.+.|++++|+..|++.++.. ..++ ..++..+..++.+.|++++|+..++++.+
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 34444555555555555555544321 0111 12344444445555555555555555443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.72 E-value=0.016 Score=40.72 Aligned_cols=113 Identities=15% Similarity=0.033 Sum_probs=79.8
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhh
Q 038936 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR----SGRFHE 415 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 415 (476)
.|+++|+++|++..+.|.. .....+. .....+.++|.+++++..+. + ++.....|+..|.. ..+.++
T Consensus 7 kd~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHH
Confidence 3678899999998887732 2222232 34556888999999988864 3 45556777777765 456889
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC
Q 038936 416 AEDVISKMPMKPDKFLWASLLGGCRI----HGNLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 416 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~ 461 (476)
|.+.|++.-..-++.....+...|.. ..+.++|..+|+++.+....
T Consensus 78 A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 78 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 99999987333355566666666665 36899999999999887653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.32 Score=42.21 Aligned_cols=116 Identities=10% Similarity=0.012 Sum_probs=72.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHH---HHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhh
Q 038936 339 NGMPDKALEYFELLLKSGTQPDHIV---FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415 (476)
Q Consensus 339 ~~~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 415 (476)
..+.+.|...+.............. ...+.......+..+.+...+...... ..+......++....+.+++..
T Consensus 227 ~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~ 303 (450)
T d1qsaa1 227 RQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (450)
T ss_dssp HHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred ccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHH
Confidence 3577888888887766532222211 122222334456667777777666543 3344444445555667789999
Q ss_pred HHHHHhhCCCCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 416 AEDVISKMPMKPD--KFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 416 A~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
+...+..+...|. ....--++.++...|+.++|...|..+..
T Consensus 304 ~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 9999988864442 23334566778888999999999988764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.67 E-value=0.079 Score=37.00 Aligned_cols=46 Identities=11% Similarity=-0.044 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc----cCchhhHHHHHHHHHH
Q 038936 341 MPDKALEYFELLLKSGTQPDHIVFVGVLTACTH----AGLVDKGLQYFHSIKE 389 (476)
Q Consensus 341 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 389 (476)
++++|+++|++..+.| ++.....|...|.. ..+.++|.++|++..+
T Consensus 74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~ 123 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 123 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence 4455555555555544 12222223333322 2345555555555543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.25 E-value=0.23 Score=33.31 Aligned_cols=140 Identities=16% Similarity=0.097 Sum_probs=85.8
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhH
Q 038936 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314 (476)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 314 (476)
+.-.|..++..+++.+...+ .+..-|+.++--....-+-+...+.++.+-+. .| ...+++....
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHH
Confidence 44567777777777777654 23444555554444444445555555444332 11 1223333333
Q ss_pred HHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCC
Q 038936 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393 (476)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 393 (476)
...+-.+.. +...+...+..+.++|+-+.-.++++.+.+.+ +|++.....+..+|.+.|...++.+++.++-++ |.
T Consensus 76 v~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~ 151 (161)
T d1wy6a1 76 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK-GE 151 (161)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hH
Confidence 333333322 33445556777888888888888888877754 677888888889999999999999998888865 54
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.20 E-value=0.46 Score=31.87 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCC
Q 038936 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292 (476)
Q Consensus 226 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 292 (476)
...+..+.....+|+-++-.+++..+.+.+ +|++.....+..+|.+.|+..++..++.+.-+.|++
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 334555677778888888888888877654 677777778888888888888888888888877753
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.29 E-value=0.88 Score=30.62 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=12.0
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHH
Q 038936 365 VGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 365 ~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
..|.-+|.+.|++++|..+++.+.+
T Consensus 77 Y~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 77 YYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3344444455555555555554443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.64 E-value=1.3 Score=28.09 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcc
Q 038936 44 EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88 (476)
Q Consensus 44 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 88 (476)
+..+-++.+-...+.|++....+.+.+|-+.+++..|.++++.++
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK 68 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 68 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444445555555555566666666666666666666666665554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.60 E-value=2.6 Score=26.65 Aligned_cols=60 Identities=15% Similarity=0.263 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHH
Q 038936 343 DKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404 (476)
Q Consensus 343 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 404 (476)
-++.+-+..+....+.|++......+++|.+.+++..|+.+++.+..+.+. +...|..++
T Consensus 23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~--~k~~y~yil 82 (105)
T d1v54e_ 23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 355556666667778888888888899999999999999999888876443 344565554
|
| >d1u9pa1 a.43.1.1 (A:72-107) Arc repressor {Salmonella bacteriophage P22 [TaxId: 10754]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Ribbon-helix-helix superfamily: Ribbon-helix-helix family: Arc/Mnt-like phage repressors domain: Arc repressor species: Salmonella bacteriophage P22 [TaxId: 10754]
Probab=80.41 E-value=1.7 Score=20.22 Aligned_cols=33 Identities=18% Similarity=0.451 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 038936 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGR 412 (476)
Q Consensus 380 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 412 (476)
.+.+.++..+..|...+..+|...+..+.+.|+
T Consensus 3 vldlvrkvaeeng~s~ns~iy~~vmes~kkegr 35 (36)
T d1u9pa1 3 VLDLVRKVAEENGRSVNSEIYQRVMESFKKEGR 35 (36)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCcchhHHHHHHHHHHHHHccC
Confidence 445566666666777777777777777777665
|