Citrus Sinensis ID: 039151

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
RPWNVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG
Secondary Structure (PSIPRED)
cccccccEEEEEccccEEEEEEEcccEEEEEEEEEccccccccHHcccccccccEEEccccccccccccccccccccccccEEEEcccccccccccccccHHHHHHHccccEEccccHHHHHHHHHHcccccEEEEccccccHHHHHHHHHcccccccccccccccccEEEEccccccccccccccccccccEEEEEEccHHHHHHHHHHHcccEEEEEcccccHHHHHcccccEEEEccccccccccHHHHHHHHHHHccccEEEEcHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEccccEEEEEEccEcEEEEEEEEEEcccccHHHHHccHHHEcEEEEEcccEcccccEcccccccccccEcEEEccEcccccccccccEcHHHHHHHcccEEEEcccHHHHHHHHHHHccEEEEEEEcccccHHHHHHHHHHcccccccHHEEEcccccEEccccccccccccccccccccEEEEEEEccccHHHHHHHHHccEEEEEEEccccHHHHHcccccEEEEccccccccccHHHHHHHHHHHccccEEEEcHHHHHHHHHcc
Coil and Loop (DISEMBL)
RPWNVANARLvledgsiwraksfgasgtqVGEVVFNTSLtgyqeiltdpsyagqfvlmtnphigntgvnfddeesRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAernimgiydvdTRAITRRLRqdgsligvlsteesksDQELLEMSRSWDIVGIDlisdvsgkepfewvestkpdwdfnthernskTYRVIAYDFGIKHNILRRLASYgcqiivvpstwpasetlklkpdgvlfsngpgdpsavPYAVAIVKELLGKVPVFGICMGHQLLGQALG
Flexible Loop (DISEMBL)
rpwnvanarlvledgsiwraksfgasgtqvGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRslsigtsnwRCAETLGnylaernimgiYDVDTRAITRRLrqdgsligvlsteesksdqeLLEMSRSWDIVGIDLISDVSGKEPFEWvestkpdwdfnthernskTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG
Low Complexity Region (SEG)
RPWNVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG
Disordered region (IsUnstruct)
***NVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVL*************MSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLG****
Disordered Region (DISOPRED)
****VAN*RLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDW********SKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG
Disordered Region (DISEMBL)
RPWNVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLS**********LEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG
Disordered Region (DISPRO)
**WNVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQAL*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
RPWNVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	279	2.2.26 [Sep-21-2011]
P74587	384	Carbamoyl-phosphate synth	N/A	no	0.974	0.708	0.505	1e-75
Q8YXQ7	388	Carbamoyl-phosphate synth	yes	no	0.974	0.701	0.490	1e-73
Q3A450	376	Carbamoyl-phosphate synth	yes	no	0.964	0.715	0.472	5e-72
Q5N0L0	391	Carbamoyl-phosphate synth	yes	no	0.971	0.693	0.479	8e-71
Q31LB7	391	Carbamoyl-phosphate synth	yes	no	0.971	0.693	0.479	1e-70
C5BQ30	386	Carbamoyl-phosphate synth	yes	no	0.960	0.694	0.492	8e-70
Q8DKU5	382	Carbamoyl-phosphate synth	yes	no	0.974	0.712	0.481	4e-69
Q87EB9	374	Carbamoyl-phosphate synth	yes	no	0.974	0.727	0.489	4e-69
P38099	384	Carbamoyl-phosphate synth	yes	no	0.964	0.700	0.476	5e-69
Q87WP3	378	Carbamoyl-phosphate synth	yes	no	0.964	0.711	0.487	5e-69

>sp|P74587|CARA_SYNY3 Carbamoyl-phosphate synthase small chain OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=carA PE=3 SV=2

 Score =  283 bits (724), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 139/275 (50%), Positives = 188/275 (68%), Gaps = 3/275 (1%)

Query: 8   ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
           A LVL DG+ +   SFGA GT VGEVVFNT +TGYQE++TDPSY GQ V  T P +GNTG
Sbjct: 9   ALLVLADGTPYPGWSFGADGTTVGEVVFNTGMTGYQEVMTDPSYCGQIVTFTYPELGNTG 68

Query: 68  VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
           VN +DEES    + G+V R+++   SNWR  ++L +YL E  I+GIY +DTRA+TR+LR 
Sbjct: 69  VNAEDEESIHPHVKGVVARNITRRPSNWRSTQSLPDYLVEHKIIGIYGIDTRALTRKLRS 128

Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFN--TH 185
            G++ G +STE  + +  L  +  +  + G++L+ +V+  E +EW +ST   W F     
Sbjct: 129 IGAMNGGISTEILEPEALLHHIQAAPSMAGLNLVKEVTTHEVYEWTDSTNDHWQFGPVAE 188

Query: 186 ERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDP 245
           ++      V+A DFG+K NILRRLASYGC++IVVP++  A+E L+  PDG+  SNGPGDP
Sbjct: 189 QQGQPPLTVVALDFGVKRNILRRLASYGCRVIVVPASTSAAEILQYNPDGIFLSNGPGDP 248

Query: 246 SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279
           SAV   +   KELL  K P+FGICMGHQ+LG +LG
Sbjct: 249 SAVEEGIVTTKELLAAKKPMFGICMGHQVLGLSLG 283

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: 5

>sp|Q8YXQ7|CARA_NOSS1 Carbamoyl-phosphate synthase small chain OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=carA PE=3 SV=1

 Score =  276 bits (707), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 135/275 (49%), Positives = 189/275 (68%), Gaps = 3/275 (1%)

Query: 8   ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
           A LVL DG+ +R  SFGA+GT +GEVVFNT +TGYQE+LTDPSY GQ V+ T P +GNTG
Sbjct: 9   ALLVLADGTAYRGWSFGATGTTIGEVVFNTGMTGYQEVLTDPSYRGQIVVFTYPELGNTG 68

Query: 68  VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
           VN +DEES +  + G + R++    SNWR  ++L +YL + +I GI+ +DTRA+TR++R 
Sbjct: 69  VNPEDEESARPQVRGAIARNICHKPSNWRSTQSLPDYLKQHHIPGIFGIDTRALTRKIRM 128

Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHE- 186
            G++ G +STE     + L ++  + ++ G++L+ +V+    +EW + T   W+FN    
Sbjct: 129 YGAMNGGISTEILDEAELLEQVQAAPNMAGLNLVREVTTSTVYEWSDPTTAVWEFNPDGT 188

Query: 187 -RNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDP 245
            +N ++  V+A DFG+K NILRRLASYGC++IVVP+     E LK  PDG+  SNGPGDP
Sbjct: 189 VKNGESLTVVALDFGVKRNILRRLASYGCRVIVVPADTSPEEILKYNPDGIFLSNGPGDP 248

Query: 246 SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279
           SAV   +   K LL  + P+FGICMGHQ+LG ALG
Sbjct: 249 SAVTEGITTAKALLESEKPIFGICMGHQILGHALG 283

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 5

>sp|Q3A450|CARA_PELCD Carbamoyl-phosphate synthase small chain OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=carA PE=3 SV=1

 Score =  271 bits (692), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 130/275 (47%), Positives = 180/275 (65%), Gaps = 6/275 (2%)

Query: 8   ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
           A L L DG ++  K+FGA G   GEVVFNTS+TGYQEILTDPSY G+ V MT P IGN G
Sbjct: 3   AILALADGRVFTGKAFGARGEVTGEVVFNTSMTGYQEILTDPSYCGEIVTMTYPLIGNYG 62

Query: 68  VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
           +N +D ES +  L+G +++      SNWR   TL +YL +  I+GI  +DTRA+ R +R 
Sbjct: 63  INPEDVESGRPHLSGFIVKEACPYPSNWRSTTTLDDYLKQNQIVGIQGIDTRALVRHIRD 122

Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFN---T 184
           +G+  G++S+ +   +  + +  ++  IVG DL+ +V+ KEP+ W E     WD +    
Sbjct: 123 NGAQTGIISSIDLDPESLVEKARKAPSIVGRDLVKEVTCKEPYHWTEGP---WDLSEGYQ 179

Query: 185 HERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGD 244
            +     Y+V+AYDFGIK NILR L + GC + VVP+T PA + + + PDGV  SNGPGD
Sbjct: 180 QQTGEPRYKVVAYDFGIKRNILRNLVAIGCDVTVVPATTPAQDVMAMNPDGVFLSNGPGD 239

Query: 245 PSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           P  + YA   +++LLGK+P+FGIC+GHQLL  ALG
Sbjct: 240 PEPIQYAQENIRQLLGKMPIFGICLGHQLLALALG 274

Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) (taxid: 338963)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 5

>sp|Q5N0L0|CARA_SYNP6 Carbamoyl-phosphate synthase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=carA PE=3 SV=1

 Score =  266 bits (681), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 131/273 (47%), Positives = 186/273 (68%), Gaps = 2/273 (0%)

Query: 8   ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
           A LVL DGS++   + GA+GT +GEVVFNT +TGYQE+LTDPSY GQ V  T P +GNTG
Sbjct: 19  ALLVLADGSVFHGYACGAAGTVIGEVVFNTGMTGYQEVLTDPSYCGQIVSFTYPELGNTG 78

Query: 68  VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
           VN +DEES +  ++GL+ R+++   SNWR   +L +YL + NI+GIY +DTRA+T+ LR 
Sbjct: 79  VNPEDEESARPQVSGLIARNVARRHSNWRADRSLPDYLQQHNIVGIYGIDTRALTQHLRS 138

Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHER 187
            G++ G +ST     ++   E+  +  + G++L+  V+   P+EW   T   W+F     
Sbjct: 139 TGAMNGGISTTILDPEELWAEVKAAPSMEGLNLVDQVTTDRPYEWQTPTSQTWEF-IEGP 197

Query: 188 NSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA 247
            +++  V+A DFG+K NILRRLASYGC++IVVP+  P  E L+ +PDGV  SNGPGDP+ 
Sbjct: 198 TTESLTVVAIDFGVKRNILRRLASYGCRVIVVPADTPIEEILRHEPDGVFLSNGPGDPAT 257

Query: 248 VPYAVAIVKELLGK-VPVFGICMGHQLLGQALG 279
           V   ++  + LL   +P+FGIC+GHQ+LG ALG
Sbjct: 258 VKNGISTAQALLQTGLPLFGICLGHQILGSALG 290

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 5

>sp|Q31LB7|CARA_SYNE7 Carbamoyl-phosphate synthase small chain OS=Synechococcus elongatus (strain PCC 7942) GN=carA PE=3 SV=1

 Score =  266 bits (680), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 131/273 (47%), Positives = 186/273 (68%), Gaps = 2/273 (0%)

Query: 8   ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
           A LVL DGS++   + GA+GT +GEVVFNT +TGYQE+LTDPSY GQ V  T P +GNTG
Sbjct: 19  ALLVLADGSVFHGYACGAAGTVIGEVVFNTGMTGYQEVLTDPSYCGQIVSFTYPELGNTG 78

Query: 68  VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
           VN +DEES +  ++GL+ R+++   SNWR   +L +YL + NI+GIY +DTRA+T+ LR 
Sbjct: 79  VNPEDEESARPQVSGLIARNVARRHSNWRADRSLPDYLQQHNIVGIYGIDTRALTQHLRS 138

Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHER 187
            G++ G +ST     ++   E+  +  + G++L+  V+   P+EW   T   W+F     
Sbjct: 139 TGAMNGGISTTILDPEELWAEVKAAPSMEGLNLVDQVTTDRPYEWQTPTSQTWEF-IEGP 197

Query: 188 NSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA 247
            +++  V+A DFG+K NILRRLASYGC++IVVP+  P  E L+ +PDGV  SNGPGDP+ 
Sbjct: 198 TTESLTVVAIDFGVKRNILRRLASYGCRVIVVPADTPIEEILRHEPDGVFLSNGPGDPAT 257

Query: 248 VPYAVAIVKELLGK-VPVFGICMGHQLLGQALG 279
           V   ++  + LL   +P+FGIC+GHQ+LG ALG
Sbjct: 258 VKNGISTAQALLQTGLPLFGICLGHQILGLALG 290

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 5

>sp|C5BQ30|CARA_TERTT Carbamoyl-phosphate synthase small chain OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=carA PE=3 SV=1

 Score =  263 bits (673), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 136/276 (49%), Positives = 183/276 (66%), Gaps = 8/276 (2%)

Query: 8   ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
           A LVLEDGS++R  S GA+G  VGEVVFNTS+TGYQEILTDPSYA Q V +T PHIGNTG
Sbjct: 13  AILVLEDGSVFRGVSIGATGKSVGEVVFNTSITGYQEILTDPSYARQIVTLTYPHIGNTG 72

Query: 68  VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
            N +DEE +  +  GLVIR L +  SN+R +++L  YL+ +NI+GI D+DTR +TR LR 
Sbjct: 73  TNSEDEECKTIWATGLVIRDLPLLASNFRNSQSLDQYLSSKNILGIADIDTRRLTRLLRD 132

Query: 128 DGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKEPFEWVESTKPDWDFNT-- 184
            G+L G +   +   + E LE +R +  + G+DL  +VS K+ ++W + +   W   +  
Sbjct: 133 KGALAGCIMAGDV-DEAEALETARGFAGLQGMDLAKEVSTKDTYQWRDGS---WKLGSGY 188

Query: 185 HERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGD 244
                K + V+AYD+G K NILR L   GC + VVP+  PA++ L + PDGV  SNGPGD
Sbjct: 189 APLAEKRFNVVAYDYGAKSNILRMLVDRGCDLTVVPAQTPAADVLAMNPDGVFLSNGPGD 248

Query: 245 PSAVPYAVAIVKELLGK-VPVFGICMGHQLLGQALG 279
           P    YA+  +K LL + +P+FGIC+GHQLL  A G
Sbjct: 249 PEPCDYAIDAIKVLLNENMPIFGICLGHQLLALASG 284

Teredinibacter turnerae (strain ATCC 39867 / T7901) (taxid: 377629)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 5

>sp|Q8DKU5|CARA_THEEB Carbamoyl-phosphate synthase small chain OS=Thermosynechococcus elongatus (strain BP-1) GN=carA PE=3 SV=1

 Score =  261 bits (667), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 132/274 (48%), Positives = 179/274 (65%), Gaps = 2/274 (0%)

Query: 8   ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
           A LVL DGS++R  SFGA GT +GEVVFNT +TGYQE+LTDPSY GQ V  T P +GNTG
Sbjct: 5   ALLVLADGSVFRGFSFGAPGTAIGEVVFNTGMTGYQEVLTDPSYYGQIVTFTYPELGNTG 64

Query: 68  VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
              +D+ES +  + G V R++    SNWR  ++L +YL    I  IY +DTRA+TR++R 
Sbjct: 65  TTPEDDESDRPQVRGAVARNICDIPSNWRSQQSLPDYLKAHRIPAIYGIDTRALTRKIRT 124

Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHER 187
            G++ G +STE     + L ++  +  + G +L   V+ + P+EW E T   W+F     
Sbjct: 125 VGAMNGGISTEILDPVELLQKVLAAPSMQGQNLAKVVTTRTPYEWTEPTPAAWEFRPQTA 184

Query: 188 NSK-TYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPS 246
             +    V+A DFG+K NILRRLASYGC++IVVP+  PA   L   PDG+  SNGPGDP+
Sbjct: 185 TEEPPLTVVAIDFGVKRNILRRLASYGCRVIVVPADTPAETILSYDPDGIFLSNGPGDPA 244

Query: 247 AVPYAVAIVKELLG-KVPVFGICMGHQLLGQALG 279
           AV   +   ++LLG + P+FGIC+GHQLLG +LG
Sbjct: 245 AVQEGIETTRKLLGAQRPMFGICLGHQLLGLSLG 278

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 5

>sp|Q87EB9|CARA_XYLFT Carbamoyl-phosphate synthase small chain OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=carA PE=3 SV=1

 Score =  261 bits (667), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 134/274 (48%), Positives = 179/274 (65%), Gaps = 2/274 (0%)

Query: 7   NARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNT 66
           +A LVLEDG+++   + GA+G  VGEVVFNT+LTGYQEILTDPSYA Q V +T PHIGNT
Sbjct: 4   HAILVLEDGTVFEGDAVGANGLSVGEVVFNTALTGYQEILTDPSYAYQLVTLTYPHIGNT 63

Query: 67  GVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLR 126
           G    D+E+ + + AGL++R +    SNWR   +L ++LA R ++ I  +DTR +TR LR
Sbjct: 64  GCTDQDDEANKVWAAGLIVRDVPRRPSNWRSQISLSDWLAARGVVAIAGIDTRKLTRILR 123

Query: 127 QDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHE 186
           + G+  G L   E    +      +   I G+DL   VS K+ + W E  + D D N  +
Sbjct: 124 EKGAQHGALMAGEIDVGKAQDAAHQFAGIKGMDLAKVVSTKQGYSWYEG-QLDLDRNECK 182

Query: 187 RNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPS 246
           R +  Y+V+AYD+G+K NILR LA  GC + VVP+  PA E L L PDGV  SNGPGDP 
Sbjct: 183 RAAPQYKVVAYDYGVKLNILRMLAERGCDLTVVPAQTPADEVLALCPDGVFLSNGPGDPE 242

Query: 247 AVPYAVAIVKE-LLGKVPVFGICMGHQLLGQALG 279
              YAVA +K  ++ +VP+FGIC+GHQLL QA+G
Sbjct: 243 PCDYAVAAIKTFIMRRVPIFGICLGHQLLAQAVG 276

Xylella fastidiosa (strain Temecula1 / ATCC 700964) (taxid: 183190)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 5

>sp|P38099|CARA_PSEST Carbamoyl-phosphate synthase small chain OS=Pseudomonas stutzeri GN=carA PE=3 SV=1

 Score =  261 bits (666), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 133/279 (47%), Positives = 183/279 (65%), Gaps = 10/279 (3%)

Query: 8   ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
           A L L DGSI+R +S GA G  +GEVVFNT++TGYQEILTDPSYA Q V +T PH+GNTG
Sbjct: 9   AILALADGSIFRGESIGADGQTIGEVVFNTAMTGYQEILTDPSYAKQIVTLTYPHVGNTG 68

Query: 68  VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
               D ES + + AGLVIR L +  SNWR  ++L +YL E + + I  +DTR +TR LR+
Sbjct: 69  TTPQDAESWKVWAAGLVIRDLPLLASNWRNKQSLPDYLKENDTVAIAGIDTRRLTRILRE 128

Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDFNTHE 186
            G+  G +      ++++ LE++RS+  + G+DL  +VS KE +EW  S    W+  T  
Sbjct: 129 KGAQNGCILAGADATEEKALELARSFPGLKGMDLAKEVSVKERYEWRYSL---WNLETDS 185

Query: 187 R-----NSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNG 241
                 +   Y V+AYD+G+K+NILR L + GC++ V+P+  PASE L L PDG+  +NG
Sbjct: 186 HPEIPASELPYHVVAYDYGVKYNILRMLVARGCRVTVLPAQTPASEALALNPDGIFLANG 245

Query: 242 PGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279
           PGDP    YA+  ++E+L   +PVFGIC+GHQLL  A G
Sbjct: 246 PGDPEPCDYAIRAIQEVLETDIPVFGICLGHQLLALASG 284

Pseudomonas stutzeri (taxid: 316)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 5

>sp|Q87WP3|CARA_PSESM Carbamoyl-phosphate synthase small chain OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=carA PE=3 SV=1

 Score =  261 bits (666), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 136/279 (48%), Positives = 181/279 (64%), Gaps = 10/279 (3%)

Query: 8   ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
           A L L DGSI+R ++ GA G  VGEVVFNT++TGYQEILTDPSYA Q V +T PHIGNTG
Sbjct: 5   AILALADGSIFRGEAIGADGQTVGEVVFNTAMTGYQEILTDPSYAQQIVTLTYPHIGNTG 64

Query: 68  VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
              +D ES + + AGLVIR L +  SNWR   +LG+YL   N++ I  +DTR +TR LR+
Sbjct: 65  TTPEDAESDRVWSAGLVIRDLPLVASNWRNKMSLGDYLKANNVVAIAGIDTRRLTRILRE 124

Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDFNTHE 186
            G+  G +   ++ S++  +  +R +  + G+DL  +VS K+ +EW  S    W+  T  
Sbjct: 125 KGAQNGCIMAGDNISEEAAIAAARGFPGLKGMDLAKEVSTKDTYEWRHSV---WNLQTDS 181

Query: 187 R-----NSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNG 241
                 +   Y V+AYD+G+K NILR L   GC++ VVP+  PASE L  KPDGV  SNG
Sbjct: 182 HPEIAASELPYHVVAYDYGVKVNILRMLVERGCRVTVVPAQTPASEVLAYKPDGVFLSNG 241

Query: 242 PGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279
           PGDP    YA+  +K++L  +VPVFGIC+GHQLL  A G
Sbjct: 242 PGDPEPCDYAIKAIKQVLETEVPVFGICLGHQLLALAAG 280

Pseudomonas syringae pv. tomato (strain DC3000) (taxid: 223283)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
359476949	426	PREDICTED: carbamoyl-phosphate synthase	1.0	0.654	0.863	1e-142
21535793	432	putative carbamoyl phosphate synthase sm	1.0	0.645	0.863	1e-142
262181537	426	anthranilate synthase 02 [Vitis vinifera	1.0	0.654	0.860	1e-141
255571716	418	Carbamoyl-phosphate synthase small chain	1.0	0.667	0.845	1e-139
224137896	390	predicted protein [Populus trichocarpa]	0.996	0.712	0.849	1e-138
449435154	432	PREDICTED: carbamoyl-phosphate synthase	1.0	0.645	0.842	1e-137
284519836	400	carbamoyl-phosphate synthase [Populus tr	0.996	0.695	0.845	1e-137
224074207	428	predicted protein [Populus trichocarpa]	0.996	0.649	0.842	1e-136
356512801	429	PREDICTED: carbamoyl-phosphate synthase	0.996	0.648	0.835	1e-136
388511022	431	unknown [Medicago truncatula]	1.0	0.647	0.817	1e-135

>gi|359476949|ref|XP_002282659.2| PREDICTED: carbamoyl-phosphate synthase small chain [Vitis vinifera] gi|296088611|emb|CBI37602.3| unnamed protein product [Vitis vinifera]

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/279 (86%), Positives = 262/279 (93%)

Query: 1   RPWNVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 60
           RPW  ++ARLVLEDGS+W+AKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN
Sbjct: 47  RPWKTSDARLVLEDGSVWKAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 106

Query: 61  PHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRA 120
           PHIGNTGVNFDDEES QCFLAGLVIRSLSIGTSNWRCAETLG+YLAERNIMGIYDVDTRA
Sbjct: 107 PHIGNTGVNFDDEESSQCFLAGLVIRSLSIGTSNWRCAETLGDYLAERNIMGIYDVDTRA 166

Query: 121 ITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDW 180
           ITRRLRQDGSLIGVLSTE+SK+D+ELL++S SWDIVG+DLIS VS   P+EWV+ T  +W
Sbjct: 167 ITRRLRQDGSLIGVLSTEDSKTDEELLKISCSWDIVGVDLISGVSCNSPYEWVDKTGSEW 226

Query: 181 DFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSN 240
           DFN++E   +T+RVIAYDFGIKHNILRRLASYGC+I VVPSTWPASETLK+KPDGVLFSN
Sbjct: 227 DFNSNETAGETFRVIAYDFGIKHNILRRLASYGCKITVVPSTWPASETLKMKPDGVLFSN 286

Query: 241 GPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           GPGDPSAVPYAV  VKE+LGKVPVFGICMGHQLLGQALG
Sbjct: 287 GPGDPSAVPYAVETVKEILGKVPVFGICMGHQLLGQALG 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21535793|emb|CAC85725.1| putative carbamoyl phosphate synthase small subunit [Nicotiana tabacum]

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/279 (86%), Positives = 258/279 (92%)

Query: 1   RPWNVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 60
           RPW VA+ARLVLEDGSIW+AKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN
Sbjct: 53  RPWKVADARLVLEDGSIWKAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 112

Query: 61  PHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRA 120
           PHIGNTGVNF DEES QCFLAGLVIRSLSI TSNWRC ETL  YLA+RNIMGIYDVDTRA
Sbjct: 113 PHIGNTGVNFGDEESMQCFLAGLVIRSLSISTSNWRCKETLDEYLAKRNIMGIYDVDTRA 172

Query: 121 ITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDW 180
           ITRRLRQDGSLIGVLSTE SK+D+ELLEMSR+WDIVG+DLIS VS K P+EWV+ T  DW
Sbjct: 173 ITRRLRQDGSLIGVLSTENSKTDEELLEMSRTWDIVGVDLISGVSCKSPYEWVDRTASDW 232

Query: 181 DFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSN 240
           DFN + RN +T+ V+AYDFGIKHNILRRLASYGC+I VVPSTWPASETLK+KPDGVLFSN
Sbjct: 233 DFNDNGRNKETFNVVAYDFGIKHNILRRLASYGCKITVVPSTWPASETLKMKPDGVLFSN 292

Query: 241 GPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           GPGDPSAVPYAV  VKEL+GK+PVFGICMGHQLLGQALG
Sbjct: 293 GPGDPSAVPYAVEAVKELIGKIPVFGICMGHQLLGQALG 331

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|262181537|gb|ACY29659.1| anthranilate synthase 02 [Vitis vinifera]

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 240/279 (86%), Positives = 262/279 (93%)

Query: 1   RPWNVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 60
           RPW  ++ARLVLEDGS+W+AKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVL+TN
Sbjct: 47  RPWKTSDARLVLEDGSVWKAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLVTN 106

Query: 61  PHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRA 120
           PHIGNTGVNFDDEES QCFLAGLVIRSLSIGTSNWRCAETLG+YLAERNIMGIYDVDTRA
Sbjct: 107 PHIGNTGVNFDDEESSQCFLAGLVIRSLSIGTSNWRCAETLGDYLAERNIMGIYDVDTRA 166

Query: 121 ITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDW 180
           ITRRLRQDGSLIGVLSTE+SK+D+ELL++S SWDIVG+DLIS VS   P+EWV+ T  +W
Sbjct: 167 ITRRLRQDGSLIGVLSTEDSKTDEELLKISCSWDIVGVDLISGVSCNSPYEWVDKTGSEW 226

Query: 181 DFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSN 240
           DFN++E   +T+RVIAYDFGIKHNILRRLASYGC+I VVPSTWPASETLK+KPDGVLFSN
Sbjct: 227 DFNSNETAGETFRVIAYDFGIKHNILRRLASYGCKITVVPSTWPASETLKMKPDGVLFSN 286

Query: 241 GPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           GPGDPSAVPYAV  VKE+LGKVPVFGICMGHQLLGQALG
Sbjct: 287 GPGDPSAVPYAVETVKEILGKVPVFGICMGHQLLGQALG 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571716|ref|XP_002526801.1| Carbamoyl-phosphate synthase small chain, putative [Ricinus communis] gi|223533805|gb|EEF35536.1| Carbamoyl-phosphate synthase small chain, putative [Ricinus communis]

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/279 (84%), Positives = 257/279 (92%)

Query: 1   RPWNVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 60
           RPW  ++ARLVLEDGSIW+AKSFGA GTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN
Sbjct: 53  RPWKTSDARLVLEDGSIWKAKSFGARGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 112

Query: 61  PHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRA 120
           PHIGNTGVNF DEES QCFLAGLVIRSLSIGTSNWRC +TLG+YLAERNIMGIYDVDTRA
Sbjct: 113 PHIGNTGVNFGDEESTQCFLAGLVIRSLSIGTSNWRCTKTLGDYLAERNIMGIYDVDTRA 172

Query: 121 ITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDW 180
           ITRRLR+DGSLIGVLSTE+SK+D+ELL+MSRSWDIVG+DLISDVS   P++WV+ T  +W
Sbjct: 173 ITRRLREDGSLIGVLSTEDSKTDEELLKMSRSWDIVGVDLISDVSCTAPYKWVDPTNSEW 232

Query: 181 DFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSN 240
           DFN++ R  + + V+AYDFGIKHNILRRLASYGC+I VVPS WPA ETLKLKPDGVLFSN
Sbjct: 233 DFNSNGREGEVFHVVAYDFGIKHNILRRLASYGCKITVVPSKWPALETLKLKPDGVLFSN 292

Query: 241 GPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           GPGDPSAVPYAV  VKELLGKVPVFGICMGHQLLGQALG
Sbjct: 293 GPGDPSAVPYAVETVKELLGKVPVFGICMGHQLLGQALG 331

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137896|ref|XP_002326467.1| predicted protein [Populus trichocarpa] gi|222833789|gb|EEE72266.1| predicted protein [Populus trichocarpa]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/279 (84%), Positives = 255/279 (91%), Gaps = 1/279 (0%)

Query: 1   RPWNVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 60
           RPW  ++ARLVLEDGS+WRAKSFGA GTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN
Sbjct: 12  RPWKTSDARLVLEDGSVWRAKSFGARGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 71

Query: 61  PHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRA 120
           PHIGNTGVNFDDEESRQCFLAGLVIRSLSI TSNWRC + LG+YL ERNIMGIYDVDTRA
Sbjct: 72  PHIGNTGVNFDDEESRQCFLAGLVIRSLSISTSNWRCTKALGDYLLERNIMGIYDVDTRA 131

Query: 121 ITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDW 180
           ITRRLRQDGSL+GVL+TEESK+D+ELLEMSRSWDIVGIDLIS V+   P+EWV+ T P+W
Sbjct: 132 ITRRLRQDGSLVGVLTTEESKTDEELLEMSRSWDIVGIDLISGVTCTAPYEWVDKTDPEW 191

Query: 181 DFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSN 240
           DFN   R  + Y VIAYDFGIKHNILRRL+SYGC+I VVPS+WPASETLK+KPDGVLFSN
Sbjct: 192 DFNCEGR-GEIYHVIAYDFGIKHNILRRLSSYGCKITVVPSSWPASETLKMKPDGVLFSN 250

Query: 241 GPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           GPGDPSAVP AV  VKELLGKVPVFGICMGHQLLGQALG
Sbjct: 251 GPGDPSAVPCAVKTVKELLGKVPVFGICMGHQLLGQALG 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435154|ref|XP_004135360.1| PREDICTED: carbamoyl-phosphate synthase small chain-like [Cucumis sativus] gi|449524226|ref|XP_004169124.1| PREDICTED: carbamoyl-phosphate synthase small chain-like [Cucumis sativus]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 235/279 (84%), Positives = 256/279 (91%)

Query: 1   RPWNVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 60
           RPW V++ARLVLEDGSIW+AKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN
Sbjct: 53  RPWKVSDARLVLEDGSIWKAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 112

Query: 61  PHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRA 120
           PHIGNTGVNFDDEE+RQCFL GLVIRSLS+ TSNWRC +TLG+YL ERNIMGIYDVDTRA
Sbjct: 113 PHIGNTGVNFDDEEARQCFLTGLVIRSLSVSTSNWRCKQTLGDYLIERNIMGIYDVDTRA 172

Query: 121 ITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDW 180
           ITRRLR+DGSLIGVLSTE+SKSD ELLEMSRSW+IVG+DLIS VS K PFEWV+ T  +W
Sbjct: 173 ITRRLREDGSLIGVLSTEKSKSDDELLEMSRSWNIVGVDLISGVSCKSPFEWVDRTDLEW 232

Query: 181 DFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSN 240
           +F +   +S+T+ V+AYDFGIK NILRRLASYGC+I VVPSTW ASETLKL PDGVLFSN
Sbjct: 233 EFKSGGHSSETFHVVAYDFGIKSNILRRLASYGCKITVVPSTWAASETLKLNPDGVLFSN 292

Query: 241 GPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           GPGDPSAVPYAV  VK+LLGKVPVFGICMGHQLLGQALG
Sbjct: 293 GPGDPSAVPYAVETVKQLLGKVPVFGICMGHQLLGQALG 331

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284519836|gb|ADB92668.1| carbamoyl-phosphate synthase [Populus tremula x Populus alba]

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 236/279 (84%), Positives = 252/279 (90%), Gaps = 1/279 (0%)

Query: 1   RPWNVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 60
           RPW  ++ARLVLEDGS+WRAKSFGA GTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN
Sbjct: 42  RPWKTSDARLVLEDGSVWRAKSFGARGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 101

Query: 61  PHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRA 120
           PHIGNTGVNFDDEESRQCFLAGLVIRSLSI TSNWRC + LG+YL ERNIMGIYDVDTRA
Sbjct: 102 PHIGNTGVNFDDEESRQCFLAGLVIRSLSISTSNWRCTKELGDYLLERNIMGIYDVDTRA 161

Query: 121 ITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDW 180
           ITRRLRQDGSL+GVL+TEESK+D+ELL+MSRSWDI GIDLIS VS   P+EWV  T  +W
Sbjct: 162 ITRRLRQDGSLVGVLTTEESKTDEELLKMSRSWDIEGIDLISGVSCTAPYEWVGKTDLEW 221

Query: 181 DFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSN 240
           DFN   R  + Y V+AYDFGIKHNILRRLASYGC+I VVPS WPASETLK+KPDGVLFSN
Sbjct: 222 DFNREGRG-EIYHVVAYDFGIKHNILRRLASYGCKITVVPSKWPASETLKMKPDGVLFSN 280

Query: 241 GPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           GPGDPSAVPYAV  VKELLGKVPVFGICMGHQLLGQALG
Sbjct: 281 GPGDPSAVPYAVETVKELLGKVPVFGICMGHQLLGQALG 319

Source: Populus tremula x Populus alba

Species: Populus tremula x Populus alba

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074207|ref|XP_002304301.1| predicted protein [Populus trichocarpa] gi|222841733|gb|EEE79280.1| predicted protein [Populus trichocarpa]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/279 (84%), Positives = 251/279 (89%), Gaps = 1/279 (0%)

Query: 1   RPWNVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 60
           RPW  ++ARLVLEDGS+WRAKSFGA GTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN
Sbjct: 50  RPWKTSDARLVLEDGSVWRAKSFGARGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 109

Query: 61  PHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRA 120
           PHIGNTGVNFDDEESRQCFLAGLVIRSLSI TSNWRC + LG+YL ERNIMGIYDVDTRA
Sbjct: 110 PHIGNTGVNFDDEESRQCFLAGLVIRSLSISTSNWRCTKELGDYLLERNIMGIYDVDTRA 169

Query: 121 ITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDW 180
           ITRRLRQDGSL+GVL+TEE K+D+ELL+MSRSWDI GIDLIS VS   P+EWV+ T  +W
Sbjct: 170 ITRRLRQDGSLVGVLTTEELKTDEELLKMSRSWDIEGIDLISGVSCTAPYEWVDKTDLEW 229

Query: 181 DFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSN 240
           DFN   R  + Y VIAYDFGIKHNILRRLASYGC+I VVPS WPASE LK+KPDGVLFSN
Sbjct: 230 DFNCEGR-GEIYHVIAYDFGIKHNILRRLASYGCKITVVPSNWPASEALKMKPDGVLFSN 288

Query: 241 GPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           GPGDPSAVPYAV  VKELLGKVPVFGICMGHQLLGQALG
Sbjct: 289 GPGDPSAVPYAVETVKELLGKVPVFGICMGHQLLGQALG 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512801|ref|XP_003525104.1| PREDICTED: carbamoyl-phosphate synthase small chain-like [Glycine max]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 233/279 (83%), Positives = 258/279 (92%), Gaps = 1/279 (0%)

Query: 1   RPWNVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 60
           RPW  + ARL+LEDGSIW+AKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN
Sbjct: 38  RPWKTSGARLMLEDGSIWKAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 97

Query: 61  PHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRA 120
           PHIGNTGVNFDDEESRQCFLAGLVIRSLSI TS+WRCAETLG+YLAERNIMGIYDVDTRA
Sbjct: 98  PHIGNTGVNFDDEESRQCFLAGLVIRSLSISTSSWRCAETLGDYLAERNIMGIYDVDTRA 157

Query: 121 ITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDW 180
           ITRRLRQ GSLIGVLST+ SK+++ELL+M+ SWDIVGIDLIS VS +   EWV++TK +W
Sbjct: 158 ITRRLRQKGSLIGVLSTDNSKTEEELLKMTHSWDIVGIDLISGVSCQSVHEWVDTTKQEW 217

Query: 181 DFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSN 240
           DF++ + + +T+ V+AYDFGIKHNILRRLASYGC+I VVPSTWPASETLK+KPDGVLFSN
Sbjct: 218 DFSS-KGHGETFHVVAYDFGIKHNILRRLASYGCKITVVPSTWPASETLKMKPDGVLFSN 276

Query: 241 GPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           GPGDPSAVPYAV  VK +LGKVPVFGICMGHQLLGQALG
Sbjct: 277 GPGDPSAVPYAVETVKNILGKVPVFGICMGHQLLGQALG 315

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511022|gb|AFK43577.1| unknown [Medicago truncatula]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 228/279 (81%), Positives = 254/279 (91%)

Query: 1   RPWNVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 60
           RPW  ++ARLVLEDGSIW+AKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN
Sbjct: 41  RPWKNSDARLVLEDGSIWKAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 100

Query: 61  PHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRA 120
           PHIGNTG+NFDDEES QCFL+GLVIRSLSI TSNWRC + LG+YL ERN+MGIYDVDTRA
Sbjct: 101 PHIGNTGINFDDEESTQCFLSGLVIRSLSISTSNWRCEKDLGDYLTERNVMGIYDVDTRA 160

Query: 121 ITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDW 180
           ITRRLR+DGSLIGVLST+ SK+D+ELL+MS+SWDIVGIDLIS VS K P EW++ T+ +W
Sbjct: 161 ITRRLREDGSLIGVLSTDNSKTDEELLQMSKSWDIVGIDLISGVSCKSPHEWIDRTREEW 220

Query: 181 DFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSN 240
           +F++ E    T+ V+AYDFGIKHNILRRLASYGC+I VVPSTWPASETLKL PDGVLFSN
Sbjct: 221 EFSSSEGPRDTFHVVAYDFGIKHNILRRLASYGCKITVVPSTWPASETLKLNPDGVLFSN 280

Query: 241 GPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           GPGDPSAVPYAV  VK ++GKVPVFGICMGHQLLGQALG
Sbjct: 281 GPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQALG 319

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
TAIR|locus:2089149	430	CARA "AT3G27740" [Arabidopsis	1.0	0.648	0.802	1.5e-122
TIGR_CMR|GSU_1273	374	GSU_1273 "carbamoyl-phosphate	0.960	0.716	0.483	1.5e-67
TIGR_CMR|CPS_3459	383	CPS_3459 "carbamoyl-phosphate	0.967	0.704	0.476	4.5e-66
TIGR_CMR|CBU_1282	402	CBU_1282 "carbamoyl-phosphate	0.964	0.669	0.469	1.4e-62
UNIPROTKB|Q9KPH8	379	carA "Carbamoyl-phosphate synt	0.978	0.720	0.480	3e-62
TIGR_CMR|VC_2390	379	VC_2390 "carbamoyl-phosphate s	0.978	0.720	0.480	3e-62
UNIPROTKB|P0A6F1	382	carA [Escherichia coli K-12 (t	0.974	0.712	0.464	2.7e-61
TIGR_CMR|SO_1141	386	SO_1141 "carbamoyl-phosphate s	0.964	0.696	0.448	6.4e-60
TIGR_CMR|SPO_1377	388	SPO_1377 "carbamoyl-phosphate	0.992	0.713	0.447	8.4e-58
TIGR_CMR|BA_4026	365	BA_4026 "carbamoyl-phosphate s	0.569	0.435	0.432	2.9e-54

TAIR|locus:2089149 CARA "AT3G27740" [Arabidopsis thaliana (taxid:3702)]

 Score = 1205 (429.2 bits), Expect = 1.5e-122, P = 1.5e-122
 Identities = 224/279 (80%), Positives = 251/279 (89%)

Query:     1 RPWNVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 60
             +PW   NARLVLEDGSIW AKSFGA GT++ E+VFNTSLTGYQEILTDPSYAGQFVLMTN
Sbjct:    51 KPWTSYNARLVLEDGSIWPAKSFGAPGTRIAELVFNTSLTGYQEILTDPSYAGQFVLMTN 110

Query:    61 PHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRA 120
             P IGNTGVN DDEES QCFL GLVIR+LSI TSNWRC +TL +YL ER+IMG+YD+DTRA
Sbjct:   111 PQIGNTGVNPDDEESGQCFLTGLVIRNLSISTSNWRCTKTLADYLTERDIMGVYDLDTRA 170

Query:   121 ITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDW 180
             ITRRLR+DGSLIGVLSTE+SK+D ELL+MSRSWDIVGIDLISDVS K P+EWV+ T  +W
Sbjct:   171 ITRRLREDGSLIGVLSTEQSKTDDELLQMSRSWDIVGIDLISDVSCKSPYEWVDKTNAEW 230

Query:   181 DFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSN 240
             DFNT+ R+ K+Y+VIAYDFGIK NILRRL+SYGCQI VVPST+PA+E LK+ PDG+LFSN
Sbjct:   231 DFNTNSRDGKSYKVIAYDFGIKQNILRRLSSYGCQITVVPSTFPAAEALKMNPDGILFSN 290

Query:   241 GPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
             GPGDPSAVPYAV  VKELLGKVPV+GICMGHQLLGQALG
Sbjct:   291 GPGDPSAVPYAVETVKELLGKVPVYGICMGHQLLGQALG 329

GO:0004088 "carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity" evidence=ISS;IDA

GO:0006543 "glutamine catabolic process" evidence=IEA

GO:0070409 "carbamoyl phosphate biosynthetic process" evidence=IEA

GO:0016036 "cellular response to phosphate starvation" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005951 "carbamoyl-phosphate synthase complex" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TIGR_CMR|GSU_1273 GSU_1273 "carbamoyl-phosphate synthase, small subunit" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 134/277 (48%), Positives = 184/277 (66%)

Query:     8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
             A L L DG ++  KSFGA+G  VGEVVFNT++TGYQE+LTDPSY GQ V MT   IGNTG
Sbjct:     3 AVLALADGRVFEGKSFGATGEAVGEVVFNTAMTGYQEVLTDPSYRGQMVTMTYTQIGNTG 62

Query:    68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
             +N +D ES+Q +L+G +++      SNWR   +L  YL E  ++GI  +DTRA+TR LR 
Sbjct:    63 INPEDIESKQLYLSGFIVKEYHDCYSNWRATMSLDAYLKENGVVGIQGLDTRALTRHLRD 122

Query:   128 DGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKEPFEWVESTKPDWD----F 182
              G+  GV+ST +S   + L++ +R+   + G+DL + VS  +P+ W E     WD    +
Sbjct:   123 KGAQNGVISTVDS-DHESLVKKARAVPSMAGLDLATGVSCDKPYHWTEKL---WDLEAGY 178

Query:   183 NTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGP 242
                  +   Y+V+AYDFGIK+NILR L S GC + VVP+T+PA E L + PDG+  SNGP
Sbjct:   179 TAATPDELKYKVVAYDFGIKYNILRCLVSAGCDVTVVPATFPADEALAMNPDGIFLSNGP 238

Query:   243 GDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
             GDP  +   +  +++ +GK P+FGIC+GHQLLG ALG
Sbjct:   239 GDPEPMTAVIENIRKFVGKKPIFGICLGHQLLGLALG 275

GO:0004088 "carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity" evidence=ISS

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=ISS

TIGR_CMR|CPS_3459 CPS_3459 "carbamoyl-phosphate synthase, small subunit" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 134/281 (47%), Positives = 187/281 (66%)

Query:     7 NARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNT 66
             +A LVLEDG++++  + GA G+ VGEVVFNTS+TGYQEILTDPSYA Q + +T PHIGNT
Sbjct:     4 SAILVLEDGTVFKGTAIGAQGSAVGEVVFNTSMTGYQEILTDPSYAEQIITLTYPHIGNT 63

Query:    67 GVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLR 126
             G N +D+ES      GLVIR L +  SN+R  + L +YL   NI+GI D+DTR +TR LR
Sbjct:    64 GTNSEDKESNSIVAKGLVIRDLPLLASNFRNEQNLSDYLIAHNILGIADIDTRKLTRILR 123

Query:   127 QDGSLIGVLSTEESKSDQEL----LEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWD 181
             + G+  G + T +  SD+ L    L  ++++  + G+DL   VS KE ++W + +   W+
Sbjct:   124 EKGAQNGCILTLDDSSDESLQADALTQAKAFPGLKGMDLAKVVSTKEQYQWTDGS---WE 180

Query:   182 FNTH--ERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFS 239
                   + ++  + V+AYDFG KHNILR L   GC++ VVP+  PASE + + PDG+  S
Sbjct:   181 LGKGFTKPDNLEFHVVAYDFGAKHNILRMLVDRGCKLTVVPAQTPASEVIAMNPDGIFLS 240

Query:   240 NGPGDPSAVPYAVAIVKELLG-KVPVFGICMGHQLLGQALG 279
             NGPGDP    YA++ ++  L  ++PVFGIC+GHQLLG A G
Sbjct:   241 NGPGDPEPCDYAISAIQSFLETEIPVFGICLGHQLLGLASG 281

GO:0004088 "carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity" evidence=ISS

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=ISS

TIGR_CMR|CBU_1282 CBU_1282 "carbamoyl-phosphate synthase, small subunit" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 129/275 (46%), Positives = 175/275 (63%)

Query:     8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
             A L L DGS+    S GA G  VGEV+FNT+LTGYQEILTDPSYA Q +  T PHIGN G
Sbjct:    33 AILALADGSVLYGYSIGADGQTVGEVIFNTTLTGYQEILTDPSYAEQIITFTYPHIGNVG 92

Query:    68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
             VN DD+ESR+ + AGL+IR LS   SNWR  + L +YL    I+GI  +DTR + R +R+
Sbjct:    93 VNMDDQESRRIWAAGLIIRELSPIVSNWRAQQALSDYLKSEEIIGIAGIDTRRLVRLIRE 152

Query:   128 DGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWD-FNTH 185
              G+L G +   +    ++ L+ +R+++ + G DL   VS      W E +   W+  +  
Sbjct:   153 KGALHGCIVAGDGAQAEQALKKARAYEGLKGKDLAKAVSTTRAQTWQERS---WNQASAP 209

Query:   186 ERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDP 245
               +S+ Y+V+ YDFG+K  ILR L   GC + +VP+     E + LKPDGV+FSNGPGDP
Sbjct:   210 HASSRAYQVVVYDFGLKQQILRLLVDQGCLVTIVPAETNVEEVIALKPDGVVFSNGPGDP 269

Query:   246 SAVPYAVAIVKELLGK-VPVFGICMGHQLLGQALG 279
             +A  YA+A +++ L K VP+ GIC+G QLL  A G
Sbjct:   270 AACDYAIATIRQFLEKGVPLLGICLGFQLLALACG 304

GO:0004088 "carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity" evidence=ISS

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=ISS

UNIPROTKB|Q9KPH8 carA "Carbamoyl-phosphate synthase small chain" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 133/277 (48%), Positives = 177/277 (63%)

Query:     7 NARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNT 66
             +A LVLEDG+++R  S GA G  VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIGNT
Sbjct:     4 SALLVLEDGTVFRGVSIGADGISVGEVVFNTSMTGYQEILTDPSYSQQIVTLTYPHIGNT 63

Query:    67 GVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLR 126
             G N +DEES      GLVIR L +  SN+R  ++L +YL  +NI+GI D+DTR +TR LR
Sbjct:    64 GTNSEDEESTAIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTRILR 123

Query:   127 QDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVE-STKPDWDFNT 184
             + G+  G +   ++  +   L  ++ +  + G+DL   VS KE + W + S   +     
Sbjct:   124 EKGAQNGCIMAGDNLDEALALAKAKEFPGLKGMDLAKVVSTKEAYAWKQGSWTLEGGLPE 183

Query:   185 HERNSKT-YRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPG 243
              + +S+  Y V+AYDFG K NILR L   GC++ VVP+   A + L L PDGV  SNGPG
Sbjct:   184 AKADSELPYHVVAYDFGAKRNILRMLVDRGCRLTVVPAQTSAEDVLALNPDGVFLSNGPG 243

Query:   244 DPSAVPYAVAIVKELLGK-VPVFGICMGHQLLGQALG 279
             DP    YA+   +  L K +PVFGIC+GHQ+L  A G
Sbjct:   244 DPEPCTYAIEATRVFLEKNIPVFGICLGHQILALASG 280

GO:0004088 "carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity" evidence=ISS

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=ISS

TIGR_CMR|VC_2390 VC_2390 "carbamoyl-phosphate synthase, small subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 133/277 (48%), Positives = 177/277 (63%)

Query:     7 NARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNT 66
             +A LVLEDG+++R  S GA G  VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIGNT
Sbjct:     4 SALLVLEDGTVFRGVSIGADGISVGEVVFNTSMTGYQEILTDPSYSQQIVTLTYPHIGNT 63

Query:    67 GVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLR 126
             G N +DEES      GLVIR L +  SN+R  ++L +YL  +NI+GI D+DTR +TR LR
Sbjct:    64 GTNSEDEESTAIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTRILR 123

Query:   127 QDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVE-STKPDWDFNT 184
             + G+  G +   ++  +   L  ++ +  + G+DL   VS KE + W + S   +     
Sbjct:   124 EKGAQNGCIMAGDNLDEALALAKAKEFPGLKGMDLAKVVSTKEAYAWKQGSWTLEGGLPE 183

Query:   185 HERNSKT-YRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPG 243
              + +S+  Y V+AYDFG K NILR L   GC++ VVP+   A + L L PDGV  SNGPG
Sbjct:   184 AKADSELPYHVVAYDFGAKRNILRMLVDRGCRLTVVPAQTSAEDVLALNPDGVFLSNGPG 243

Query:   244 DPSAVPYAVAIVKELLGK-VPVFGICMGHQLLGQALG 279
             DP    YA+   +  L K +PVFGIC+GHQ+L  A G
Sbjct:   244 DPEPCTYAIEATRVFLEKNIPVFGICLGHQILALASG 280

GO:0004088 "carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity" evidence=ISS

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=ISS

UNIPROTKB|P0A6F1 carA [Escherichia coli K-12 (taxid:83333)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 131/282 (46%), Positives = 177/282 (62%)

Query:     5 VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
             + +A LVLEDG+ +  ++ GA+G+ VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIG
Sbjct:     2 IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61

Query:    65 NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
             N G N  DEES Q    GLVIR L +  SN+R  E L +YL   NI+ I D+DTR +TR 
Sbjct:    62 NVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRL 121

Query:   125 LRQDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDFN 183
             LR+ G+  G +   ++      LE +R++  + G+DL  +V+  E + W   T+  W   
Sbjct:   122 LREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSW---TQGSWTLT 178

Query:   184 -----THERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
                    + +   + V+AYDFG K NILR L   GC++ +VP+   A + LK+ PDG+  
Sbjct:   179 GGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFL 238

Query:   239 SNGPGDPSAVPYAV-AIVKELLGKVPVFGICMGHQLLGQALG 279
             SNGPGDP+   YA+ AI K L   +PVFGIC+GHQLL  A G
Sbjct:   239 SNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASG 280

GO:0005737 "cytoplasm" evidence=IDA

GO:0004088 "carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity" evidence=IEA;IMP

GO:0006541 "glutamine metabolic process" evidence=IEA;IMP

GO:0006526 "arginine biosynthetic process" evidence=IEA;IMP

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IMP

GO:0070409 "carbamoyl phosphate biosynthetic process" evidence=IEA

GO:0006543 "glutamine catabolic process" evidence=IEA

GO:0044205 "'de novo' UMP biosynthetic process" evidence=IEA

GO:0005951 "carbamoyl-phosphate synthase complex" evidence=IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016874 "ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

TIGR_CMR|SO_1141 SO_1141 "carbamoyl-phosphate synthase, small subunit" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 126/281 (44%), Positives = 175/281 (62%)

Query:     7 NARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNT 66
             +A LVLEDG+++   + GA G  VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIGNT
Sbjct:     8 SALLVLEDGTVFTGTAIGADGLSVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNT 67

Query:    67 GVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLR 126
             G N +D ES      GL+IR L +  S++R  + L +YL   N++GI D+DTR +TR LR
Sbjct:    68 GTNNEDVESNGVHACGLIIRDLPLIASSFRNQQNLSDYLKANNVVGIADIDTRKLTRILR 127

Query:   127 QDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDF--- 182
             + G+  G +       + + L  ++++  + G+DL  +V+  + + W    K  W     
Sbjct:   128 EKGAQAGCIMAGADLDEVKALAAAKAFPGLKGMDLAKEVTTDKAYPW---RKGSWRLVGG 184

Query:   183 ---NTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFS 239
                +T     K Y+V+AYD+G+K NILR L   GC + VVP+  PASE L + PDGV  S
Sbjct:   185 LPADTPAEALK-YKVVAYDYGVKQNILRMLVDRGCDVTVVPAKTPASEVLAMNPDGVFLS 243

Query:   240 NGPGDPSAVPYAVAIVKELLGK-VPVFGICMGHQLLGQALG 279
             NGPGDP    YA+  ++++L    P+FGIC+GHQLL  A G
Sbjct:   244 NGPGDPEPCDYAIEAIQQILKTDTPIFGICLGHQLLALASG 284

GO:0004088 "carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity" evidence=ISS

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=ISS

TIGR_CMR|SPO_1377 SPO_1377 "carbamoyl-phosphate synthase, small subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 127/284 (44%), Positives = 176/284 (61%)

Query:     2 PWNVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNP 61
             P +   A LVL DG+++    FGA+G  V E+ FNT++TGYQEI+TDPSYAGQ V  T P
Sbjct:     5 PLSKPTACLVLADGTVFYGTGFGATGQTVAELCFNTAMTGYQEIMTDPSYAGQIVTFTFP 64

Query:    62 HIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAI 121
             HIGN GV  +D+E+     AG+V++      SNWR AE L  +LA R  + I  VDTR +
Sbjct:    65 HIGNVGVTPEDDETTDPVAAGMVVKWDPTAASNWRAAEELKGWLARRGRIAIGGVDTRRL 124

Query:   122 TRRLRQDGSL-IGVLSTEESKSD-QELLEMSRSW-DIVGIDLISDVSGKEPFEWVESTKP 178
             TR +RQ G+  + +    E K D   L+  +R +  + G+DL  DV+  + + W E  + 
Sbjct:   125 TRAIRQQGAPHVALAHDPEGKFDLAALIAAARGFAGLEGMDLAKDVTCAQSYRWDEM-RW 183

Query:   179 DWDFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
              W      + +  ++V+A D+G K NILR LAS GC + V+P+T  A+E L   PDGV  
Sbjct:   184 AWPEGYARQEAPKHKVVAIDYGAKRNILRCLASSGCDVTVLPATATAAEVLAHAPDGVFL 243

Query:   239 SNGPGDPSAV-PYAVAIVKELLG--KVPVFGICMGHQLLGQALG 279
             SNGPGDP+A   YAV +++E+L    +PVFGIC+GHQ+L  ALG
Sbjct:   244 SNGPGDPAATGEYAVPMIREILDTTSLPVFGICLGHQMLALALG 287

GO:0004088 "carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity" evidence=ISS

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=ISS

TIGR_CMR|BA_4026 BA_4026 "carbamoyl-phosphate synthase, small subunit" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 307 (113.1 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
 Identities = 70/162 (43%), Positives = 99/162 (61%)

Query:     9 RLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGV 68
             +L+LEDG++     FG    + GEVVF T +TGYQE L+DPSY GQ V  T P IGN G+
Sbjct:     4 QLILEDGTVLIGTGFGGEIEKSGEVVFTTGMTGYQETLSDPSYCGQIVTFTYPLIGNYGI 63

Query:    69 NFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQD 128
             N DD ES    + GL++  +    SN+R   +L +YL ERNI G+  +DTR +TR++RQ 
Sbjct:    64 NRDDFESIHPSVNGLIVNEICDHPSNFRNEISLNDYLKERNIPGLAGIDTRKLTRKIRQY 123

Query:   129 GSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPF 170
             G+L G L   ++  D E + +S+    V  D +  VS K+P+
Sbjct:   124 GTLRGRLCNMDA--DVEYI-VSQLKATVFTDHVKRVSTKDPY 162

GO:0004088 "carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity" evidence=ISS

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.5.5	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	279
PLN02771	415	PLN02771, PLN02771, carbamoyl-phosphate synthase (	0.0
PRK12564	360	PRK12564, PRK12564, carbamoyl phosphate synthase s	1e-145
TIGR01368	358	TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synt	1e-142
COG0505	368	COG0505, CarA, Carbamoylphosphate synthase small s	1e-131
CHL00197	382	CHL00197, carA, carbamoyl-phosphate synthase argin	6e-99
PRK12838	354	PRK12838, PRK12838, carbamoyl phosphate synthase s	8e-92
pfam00988	131	pfam00988, CPSase_sm_chain, Carbamoyl-phosphate sy	2e-74
smart01097	130	smart01097, CPSase_sm_chain, Carbamoyl-phosphate s	5e-73
cd01744	178	cd01744, GATase1_CPSase, Small chain of the glutam	4e-45
pfam00117	186	pfam00117, GATase, Glutamine amidotransferase clas	2e-30
cd01743	184	cd01743, GATase1_Anthranilate_Synthase, Type 1 glu	7e-19
COG0512	191	COG0512, PabA, Anthranilate/para-aminobenzoate syn	6e-16
PRK05670	189	PRK05670, PRK05670, anthranilate synthase componen	1e-15
cd01742	181	cd01742, GATase1_GMP_Synthase, Type 1 glutamine am	3e-11
PLN02335	222	PLN02335, PLN02335, anthranilate synthase	5e-11
TIGR00888	188	TIGR00888, guaA_Nterm, GMP synthase (glutamine-hyd	3e-10
PRK14607	534	PRK14607, PRK14607, bifunctional glutamine amidotr	5e-10
cd01653	115	cd01653, GATase1, Type 1 glutamine amidotransferas	4e-09
TIGR00566	188	TIGR00566, trpG_papA, glutamine amidotransferase o	4e-09
PRK07649	195	PRK07649, PRK07649, para-aminobenzoate/anthranilat	5e-09
PRK00758	184	PRK00758, PRK00758, GMP synthase subunit A; Valida	5e-09
cd03128	92	cd03128, GAT_1, Type 1 glutamine amidotransferase	6e-09
PRK00074	511	PRK00074, guaA, GMP synthase; Reviewed	9e-09
PRK06774	191	PRK06774, PRK06774, para-aminobenzoate synthase co	5e-08
PRK05637	208	PRK05637, PRK05637, anthranilate synthase componen	6e-08
PRK08007	187	PRK08007, PRK08007, para-aminobenzoate synthase co	8e-08
CHL00101	190	CHL00101, trpG, anthranilate synthase component 2	1e-07
cd01741	188	cd01741, GATase1_1, Subgroup of proteins having th	1e-07
PRK07765	214	PRK07765, PRK07765, para-aminobenzoate synthase co	1e-07
COG0518	198	COG0518, GuaA, GMP synthase - Glutamine amidotrans	2e-07
PRK09522	531	PRK09522, PRK09522, bifunctional glutamine amidotr	4e-07
PLN02347	536	PLN02347, PLN02347, GMP synthetase	1e-06
PRK08857	193	PRK08857, PRK08857, para-aminobenzoate synthase co	1e-05
PRK09065	237	PRK09065, PRK09065, glutamine amidotransferase; Pr	4e-05
PRK13566	720	PRK13566, PRK13566, anthranilate synthase; Provisi	6e-05
TIGR01815	717	TIGR01815, TrpE-clade3, anthranilate synthase, alp	6e-05
TIGR01823	742	TIGR01823, PabB-fungal, aminodeoxychorismate synth	2e-04
cd01745	189	cd01745, GATase1_2, Subgroup of proteins having th	7e-04
pfam07722	219	pfam07722, Peptidase_C26, Peptidase C26	0.004

>gnl|CDD|178370 PLN02771, PLN02771, carbamoyl-phosphate synthase (glutamine-hydrolyzing)

 Score =  568 bits (1464), Expect = 0.0
 Identities = 242/279 (86%), Positives = 262/279 (93%)

Query: 1   RPWNVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 60
           RPW  ++ARLVLEDGS+W+AKSFGA GTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN
Sbjct: 50  RPWKTSDARLVLEDGSVWKAKSFGARGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 109

Query: 61  PHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRA 120
           PHIGNTGVNFDDEESRQCFLAGLVIRSLSI TSNWRC +TLG+YLAERNIMGIYDVDTRA
Sbjct: 110 PHIGNTGVNFDDEESRQCFLAGLVIRSLSISTSNWRCTKTLGDYLAERNIMGIYDVDTRA 169

Query: 121 ITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDW 180
           ITRRLR+DGSLIGVLSTE+SK+D+ELL+MSRSWDIVGIDLIS VS K P+EWV+ T P+W
Sbjct: 170 ITRRLREDGSLIGVLSTEDSKTDEELLKMSRSWDIVGIDLISGVSCKSPYEWVDKTNPEW 229

Query: 181 DFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSN 240
           DFNT+ R+ ++Y VIAYDFGIKHNILRRLASYGC+I VVPSTWPASE LK+KPDGVLFSN
Sbjct: 230 DFNTNSRDGESYHVIAYDFGIKHNILRRLASYGCKITVVPSTWPASEALKMKPDGVLFSN 289

Query: 241 GPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           GPGDPSAVPYAV  VKELLGKVPVFGICMGHQLLGQALG
Sbjct: 290 GPGDPSAVPYAVETVKELLGKVPVFGICMGHQLLGQALG 328

Length = 415

>gnl|CDD|237139 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit; Reviewed

 Score =  411 bits (1058), Expect = e-145
 Identities = 145/275 (52%), Positives = 189/275 (68%), Gaps = 14/275 (5%)

Query: 7   NARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNT 66
            A LVLEDG+++  K+FGA G  VGEVVFNTS+TGYQEILTDPSYAGQ V  T P IGN 
Sbjct: 4   KAYLVLEDGTVFEGKAFGAEGETVGEVVFNTSMTGYQEILTDPSYAGQIVTFTYPLIGNY 63

Query: 67  GVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLR 126
           GVN +D ES +    GL++R LS   SNWR   +L  YL E  I GI  +DTRA+TR+LR
Sbjct: 64  GVNREDFESDRPHAKGLIVRELSDIPSNWRSEMSLDEYLKENGIPGISGIDTRALTRKLR 123

Query: 127 QDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKEPFEWVESTKPDWDFNTH 185
           + G++ GV++TE+    +ELLE +R++  ++G+DL+ +VS KEP+ W             
Sbjct: 124 EKGAMKGVIATEDF-DAEELLEKARAFPGLLGLDLVKEVSTKEPYPWPG----------- 171

Query: 186 ERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDP 245
                 Y+V+A DFG+K NILR LA  GC++ VVP+T  A E L L PDGV  SNGPGDP
Sbjct: 172 PGGELKYKVVAIDFGVKRNILRELAERGCRVTVVPATTTAEEILALNPDGVFLSNGPGDP 231

Query: 246 SAVPYAVAIVKELLG-KVPVFGICMGHQLLGQALG 279
           +A+ YA+ +++ELL  K+P+FGIC+GHQLL  ALG
Sbjct: 232 AALDYAIEMIRELLEKKIPIFGICLGHQLLALALG 266

Length = 360

>gnl|CDD|233378 TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synthase, small subunit

 Score =  404 bits (1041), Expect = e-142
 Identities = 138/272 (50%), Positives = 183/272 (67%), Gaps = 11/272 (4%)

Query: 8   ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
           A LVLEDG+++   SFGA GT  GEVVFNT +TGYQEILTDPSY GQ V+ T P IGN G
Sbjct: 1   AYLVLEDGTVFEGYSFGAEGTVAGEVVFNTGMTGYQEILTDPSYKGQIVVFTYPLIGNYG 60

Query: 68  VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
           +N +D ES+   ++GLV+R LS   SNWR  E+L  +L    I GIY VDTRA+ +++R+
Sbjct: 61  INDEDAESKGIHVSGLVVRELSDRYSNWRATESLDQFLKRHGIPGIYGVDTRALVKKIRE 120

Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHER 187
            G++ GV+STE+S  ++ + + S S DI GI+L+++VS KEP+ W             +R
Sbjct: 121 KGTMKGVISTEDSNDEELVQKASVSPDITGINLVAEVSTKEPYTW-----------GQKR 169

Query: 188 NSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA 247
             K  RV+  DFG+K NILRRL   GC++ VVP    A E  K  PDG+  SNGPGDP+A
Sbjct: 170 GGKKRRVVVIDFGVKQNILRRLVKRGCEVTVVPYDTDAEEIKKYNPDGIFLSNGPGDPAA 229

Query: 248 VPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           V  A+  +++LL K+P+FGIC+GHQLL  A G
Sbjct: 230 VKPAIETIRKLLEKIPIFGICLGHQLLALAFG 261

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 358

>gnl|CDD|223579 COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

 Score =  376 bits (969), Expect = e-131
 Identities = 143/274 (52%), Positives = 182/274 (66%), Gaps = 11/274 (4%)

Query: 8   ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
           A LVLEDG+++   SFGA GT VGEVVFNTS+TGYQEILTDPSY GQ V  T P IGN G
Sbjct: 4   AYLVLEDGTVFEGYSFGAEGTAVGEVVFNTSMTGYQEILTDPSYKGQIVTFTYPLIGNYG 63

Query: 68  VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
           VN +D ES +   AGLV+R LS   SNWR  E+L  YL E  I GI  +DTRA+TR++R+
Sbjct: 64  VNDEDFESDRIHAAGLVVRELSERPSNWRATESLDEYLKEEGIPGIAGIDTRALTRKIRE 123

Query: 128 DGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKEPFEWVESTKPDWDFNTHE 186
            G++ GV++T       +LLE +R++  I+G DL+ +VS KEP+ W     P  +     
Sbjct: 124 KGAMKGVIATGPELDPAKLLERARAFPGILGTDLVKEVSTKEPYTW-----PGLNGGGEP 178

Query: 187 RNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPS 246
                  V+  DFG+K NILR L   GC++ VVP+   A E L L PDG+  SNGPGDP+
Sbjct: 179 G----KHVVVIDFGVKRNILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPGDPA 234

Query: 247 AVPYAVAIVKELLG-KVPVFGICMGHQLLGQALG 279
            + YA+  +KELLG K+P+FGIC+GHQLL  ALG
Sbjct: 235 PLDYAIETIKELLGTKIPIFGICLGHQLLALALG 268

Length = 368

>gnl|CDD|214392 CHL00197, carA, carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

 Score =  294 bits (754), Expect = 6e-99
 Identities = 125/275 (45%), Positives = 174/275 (63%), Gaps = 3/275 (1%)

Query: 8   ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
           A LVLEDG+ +R  SF    T +GEVVFNT +TGYQEI+TDPSY  Q V  T P IGNTG
Sbjct: 7   AILVLEDGTYYRGWSFSNPITTIGEVVFNTGMTGYQEIITDPSYFEQIVTFTYPEIGNTG 66

Query: 68  VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
           +N +D ES +  + G++ +++   +SNWR  E+L +YL    I  I+ +DTRA+T+ LR+
Sbjct: 67  INLEDIESVKIQVKGIIAKNICKSSSNWRQQESLVSYLQRHKIPFIFGIDTRALTQHLRR 126

Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWD--FNTH 185
            G++ G +S +         ++  S  +   DLI  V+    +EW E + P +    N  
Sbjct: 127 FGTMNGCISNQNLNLSYLRAKIKESPHMPSSDLIPRVTTSSYYEWDEKSHPSFYLADNKR 186

Query: 186 ERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDP 245
             +S   ++I  DFG+K+NILRRL S+GC I VVP+T P  + L  +PDG+L SNGPGDP
Sbjct: 187 PHSSYQLKIIVIDFGVKYNILRRLKSFGCSITVVPATSPYQDILSYQPDGILLSNGPGDP 246

Query: 246 SAVPYAVAIVKELLG-KVPVFGICMGHQLLGQALG 279
           SA+ Y +  VK+LL   +P+FGICMGHQ+L  AL 
Sbjct: 247 SAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALE 281

Length = 382

>gnl|CDD|183784 PRK12838, PRK12838, carbamoyl phosphate synthase small subunit; Reviewed

 Score =  275 bits (705), Expect = 8e-92
 Identities = 105/276 (38%), Positives = 158/276 (57%), Gaps = 23/276 (8%)

Query: 6   ANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGN 65
             A L+LEDG+++  +  GA     GE+VFNT +TGYQE+LTDPSY GQ V+ T P IGN
Sbjct: 1   MKAYLILEDGTVFEGELIGAPIDVTGEIVFNTGMTGYQEVLTDPSYKGQIVVFTYPLIGN 60

Query: 66  TGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRL 125
            G+N DD ES+Q  + G+++  LS   S++R  ++L ++L E NI GI  VDTRA+ + +
Sbjct: 61  YGINADDYESKQPQVKGVIVYELSREGSHYRAKQSLDDFLKEWNIPGISGVDTRALVKHI 120

Query: 126 RQDGSLIGVLST--EESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFN 183
           R+ G++   ++T  +    DQ    +         ++++ VS KEP+ +           
Sbjct: 121 REKGTMKASITTTDDAHAFDQIKALVL------PKNVVAQVSTKEPYTY----------- 163

Query: 184 THERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPG 243
                +    V   DFG K +ILR L+  GC++ V+P      E   L PDG++ SNGPG
Sbjct: 164 ----GNGGKHVALIDFGYKKSILRSLSKRGCKVTVLPYDTSLEEIKNLNPDGIVLSNGPG 219

Query: 244 DPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           DP  +   +  +K+L+   P+ GIC+GHQL+  ALG
Sbjct: 220 DPKELQPYLPEIKKLISSYPILGICLGHQLIALALG 255

Length = 354

>gnl|CDD|144543 pfam00988, CPSase_sm_chain, Carbamoyl-phosphate synthase small chain, CPSase domain

 Score =  223 bits (571), Expect = 2e-74
 Identities = 75/130 (57%), Positives = 94/130 (72%)

Query: 7   NARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNT 66
            A LVLEDG+++  +SFGA G  VGEVVFNT +TGYQEILTDPSYAGQ V+ T P IGN 
Sbjct: 2   KAYLVLEDGTVFEGESFGAEGEAVGEVVFNTGMTGYQEILTDPSYAGQIVVFTYPLIGNY 61

Query: 67  GVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLR 126
           G+N +D ES +    GL++R LS   SNWR  E+L  +L E  I GI  VDTRA+TR+LR
Sbjct: 62  GINPEDFESDKPHAKGLIVRELSDIPSNWRSEESLDEFLKEHGIPGISGVDTRALTRKLR 121

Query: 127 QDGSLIGVLS 136
           + G++ GV+S
Sbjct: 122 EKGAMKGVIS 131

The carbamoyl-phosphate synthase domain is in the amino terminus of protein. Carbamoyl-phosphate synthase catalyzes the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesise carbamoyl phosphate. See pfam00289. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. Length = 131

>gnl|CDD|198165 smart01097, CPSase_sm_chain, Carbamoyl-phosphate synthase small chain, CPSase domain

 Score =  219 bits (561), Expect = 5e-73
 Identities = 74/130 (56%), Positives = 94/130 (72%)

Query: 6   ANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGN 65
             A LVLEDG+++  +SFGA G  VGEVVFNT +TGYQEILTDPSYAGQ V+ T P IGN
Sbjct: 1   MKAYLVLEDGTVFEGESFGAEGETVGEVVFNTGMTGYQEILTDPSYAGQIVVFTYPLIGN 60

Query: 66  TGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRL 125
            GVN +D ES +  + GLV+R LS   SNWR  ++L  +L E  I GI  +DTRA+TR+L
Sbjct: 61  YGVNDEDFESDKIQVKGLVVRELSDEPSNWRSEQSLDEFLKENGIPGISGIDTRALTRKL 120

Query: 126 RQDGSLIGVL 135
           R+ G++ GV+
Sbjct: 121 REKGAMKGVI 130

The carbamoyl-phosphate synthase domain is in the amino terminus of protein. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesise carbamoyl phosphate. The small chain has a GATase domain in the carboxyl terminus. Length = 130

>gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

 Score =  149 bits (380), Expect = 4e-45
 Identities = 50/87 (57%), Positives = 63/87 (72%), Gaps = 1/87 (1%)

Query: 194 VIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVA 253
           V+  DFG+KHNILR L   GC++ VVP    A E LKL PDG+  SNGPGDP+ +  A+ 
Sbjct: 1   VVVIDFGVKHNILRELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNGPGDPALLDEAIK 60

Query: 254 IVKELLGK-VPVFGICMGHQLLGQALG 279
            V++LLGK +P+FGIC+GHQLL  ALG
Sbjct: 61  TVRKLLGKKIPIFGICLGHQLLALALG 87

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is a heterodimer consisting of two polypeptide chains referred to as the small and large subunit. Ammonia an intermediate during the biosynthesis of carbomyl phosphate produced by the hydrolysis of glutamine in the small subunit of the enzyme is delivered via a molecular tunnel between the remotely located carboxyphosphate active site in the large subunit. CPSase IIs belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. This group also contains the sequence from the mammalian urea cycle form which has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I. Length = 178

>gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I

 Score =  112 bits (282), Expect = 2e-30
 Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 194 VIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVA 253
           +I       +N+ R L   G ++ VVP+  PA E L+L PDG++ S GPG P A+  A+ 
Sbjct: 2   LIDNGDSFTYNLARALRELGVEVEVVPNDTPAEEILELNPDGIIISPGPGSPGALGGAIE 61

Query: 254 IVKELLGK-VPVFGICMGHQLLGQALG 279
            +KEL    +P+ GIC+GHQLL  A G
Sbjct: 62  AIKELRENKIPILGICLGHQLLALAFG 88

Length = 186

>gnl|CDD|153214 cd01743, GATase1_Anthranilate_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

 Score = 81.8 bits (203), Expect = 7e-19
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 203 HNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGK 261
           +N+++ L   G +++VV +      E   L PD ++ S GPG P     ++ I++ L GK
Sbjct: 12  YNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGISLEIIRALAGK 71

Query: 262 VPVFGICMGHQLLGQALG 279
           VP+ G+C+GHQ + +A G
Sbjct: 72  VPILGVCLGHQAIAEAFG 89

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the presence of phosphoribosyl-anthranilate transferase (PRTase) activity. PRTase catalyses the second step in tryptophan biosynthesis and results in the addition of 5-phosphoribosyl-1-pyrophosphate to anthranilate to create N-5'-phosphoribosyl-anthranilate. In E.coli, the first step in the conversion of chorismate to PABA involves two proteins: PabA and PabB which co-operate to transfer the amide nitrogen of glutamine to chorismate forming 4-amino-4 deoxychorismate (ADC). PabA acts as a glutamine amidotransferase, supplying an amino group to PabB, which carries out the amination reaction. A third protein PabC then mediates elimination of pyruvate and aromatization to give PABA. Several organisms have bipartite proteins containing fused domains homologous to PabA and PabB commonly called PABA synthases. These hybrid PABA synthases may produce ADC and not PABA. Length = 184

>gnl|CDD|223586 COG0512, PabA, Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

 Score = 73.7 bits (182), Expect = 6e-16
 Identities = 24/78 (30%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 203 HNILRRLASYGCQIIVVPSTWPASETL-KLKPDGVLFSNGPGDPSAVPYAVAIVKELLGK 261
           +N+++ L   G ++ VV +   + E +  LKPD ++ S GPG P     ++ +++   G+
Sbjct: 15  YNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGISLELIRRFAGR 74

Query: 262 VPVFGICMGHQLLGQALG 279
           +P+ G+C+GHQ + +A G
Sbjct: 75  IPILGVCLGHQAIAEAFG 92

Length = 191

>gnl|CDD|235552 PRK05670, PRK05670, anthranilate synthase component II; Provisional

 Score = 72.9 bits (180), Expect = 1e-15
 Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 204 NILRRLASYGCQIIVVP-STWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKV 262
           N+++ L   G +++V         E   L PD ++ S GPG P+    ++ +++E  GKV
Sbjct: 14  NLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAGISLELIREFAGKV 73

Query: 263 PVFGICMGHQLLGQALG 279
           P+ G+C+GHQ +G+A G
Sbjct: 74  PILGVCLGHQAIGEAFG 90

Length = 189

>gnl|CDD|153213 cd01742, GATase1_GMP_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

 Score = 60.6 bits (148), Expect = 3e-11
 Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 14/94 (14%)

Query: 194 VIAYDFGIK--HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGP------GDP 245
           ++  DFG +  H I RR+   G    ++P+T P  E     P G++ S GP        P
Sbjct: 1   ILILDFGSQYTHLIARRVRELGVYSEILPNTTPLEEIKLKNPKGIILSGGPSSVYEEDAP 60

Query: 246 SAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
              P     + EL   VPV GIC G QL+ +ALG
Sbjct: 61  RVDPE----IFEL--GVPVLGICYGMQLIAKALG 88

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 181

>gnl|CDD|177969 PLN02335, PLN02335, anthranilate synthase

 Score = 60.6 bits (147), Expect = 5e-11
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 203 HNILRRLASYGCQIIVVPSTWPASETLK-LKPDGVLFSNGPGDPSAVPYAVAIVKELLGK 261
           +N+ + +   GC   V  +     E LK   P GVL S GPG P     ++  V EL   
Sbjct: 32  YNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPL 91

Query: 262 VPVFGICMGHQLLGQALG 279
           VP+FG+CMG Q +G+A G
Sbjct: 92  VPLFGVCMGLQCIGEAFG 109

Length = 222

>gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 198 DFGIKHN--ILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA--VPYAVA 253
           DFG ++   I RRL   G    +VP+T P  E  +  P G++ S GP    A   P A  
Sbjct: 5   DFGSQYTQLIARRLRELGVYSELVPNTTPLEEIREKNPKGIILSGGPSSVYAENAPRADE 64

Query: 254 IVKELLGKVPVFGICMGHQLLGQALG 279
            + EL   VPV GIC G QL+ + LG
Sbjct: 65  KIFEL--GVPVLGICYGMQLMAKQLG 88

This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 188

>gnl|CDD|237764 PRK14607, PRK14607, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 22/67 (32%), Positives = 33/67 (49%)

Query: 213 GCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGHQ 272
               +V        E   L P  ++ S GPG P     +V +++   GKVP+ G+C+GHQ
Sbjct: 25  EEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAGISVEVIRHFSGKVPILGVCLGHQ 84

Query: 273 LLGQALG 279
            +G A G
Sbjct: 85  AIGYAFG 91

Length = 534

>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 53.4 bits (128), Expect = 4e-09
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 203 HNILRRLASYGCQIIVVPSTWPASETLKL--KPDGVLFSNGPGDPSAV---PYAVAIVKE 257
            + L  L   G ++ VV       E+       DG++   GPG P  +      +A+++E
Sbjct: 15  ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLRE 74

Query: 258 LLG-KVPVFGICMGHQLL 274
                 P+ GIC+G QLL
Sbjct: 75  AAAAGKPILGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115

>gnl|CDD|233027 TIGR00566, trpG_papA, glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

 Score = 54.8 bits (132), Expect = 4e-09
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 230 KLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
            L P  ++ S GP  P+    ++  ++   GK+P+ G+C+GHQ +GQA G
Sbjct: 41  ALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGVCLGHQAMGQAFG 90

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the PFAM model GATase. Length = 188

>gnl|CDD|181066 PRK07649, PRK07649, para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

 Score = 54.4 bits (131), Expect = 5e-09
 Identities = 19/54 (35%), Positives = 34/54 (62%)

Query: 226 SETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           S+   +KPD ++ S GP  P+    ++ +++   GK+P+FG+C+GHQ + Q  G
Sbjct: 37  SDIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGVCLGHQSIAQVFG 90

Length = 195

>gnl|CDD|179112 PRK00758, PRK00758, GMP synthase subunit A; Validated

 Score = 54.1 bits (131), Expect = 5e-09
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 203 HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKV 262
           H I R L   G    ++P+T P  E +K   DG++ S GP D          +KEL   V
Sbjct: 13  HLIHRTLRYLGVDAKIIPNTTPVEE-IKAFEDGLILSGGP-DIERAGNCPEYLKEL--DV 68

Query: 263 PVFGICMGHQLLGQALG 279
           P+ GIC+GHQL+ +A G
Sbjct: 69  PILGICLGHQLIAKAFG 85

Length = 184

>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 51.8 bits (124), Expect = 6e-09
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 203 HNILRRLASYGCQIIVVPST--WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL- 259
            + L  L   G ++ VV        S+      DG++   GPG P  + +  A++  L  
Sbjct: 15  ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLRE 74

Query: 260 ---GKVPVFGICMGHQLL 274
                 PV GIC+G QLL
Sbjct: 75  AAAAGKPVLGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92

>gnl|CDD|234614 PRK00074, guaA, GMP synthase; Reviewed

 Score = 55.4 bits (135), Expect = 9e-09
 Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 12/94 (12%)

Query: 193 RVIAYDFGIKHN--ILRRL--ASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPG---DP 245
           +++  DFG ++   I RR+       +I  VP    A E     P G++ S GP    + 
Sbjct: 5   KILILDFGSQYTQLIARRVRELGVYSEI--VPYDISAEEIRAFNPKGIILSGGPASVYEE 62

Query: 246 SAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
            A P A   + EL   VPV GIC G QL+   LG
Sbjct: 63  GA-PRADPEIFEL--GVPVLGICYGMQLMAHQLG 93

Length = 511

>gnl|CDD|180689 PRK06774, PRK06774, para-aminobenzoate synthase component II; Provisional

 Score = 51.4 bits (123), Expect = 5e-08
 Identities = 19/50 (38%), Positives = 32/50 (64%)

Query: 230 KLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           +L P  ++ S GP  P+    ++A+++    K+P+ G+C+GHQ LGQA G
Sbjct: 41  QLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGVCLGHQALGQAFG 90

Length = 191

>gnl|CDD|180178 PRK05637, PRK05637, anthranilate synthase component II; Provisional

 Score = 51.8 bits (124), Expect = 6e-08
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 203 HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKV 262
           +N++   A  G +  V  +T P  E L   PD +  S GPG P      +A++   LG++
Sbjct: 15  YNLVDAFAVAGYKCTVFRNTVPVEEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQI 74

Query: 263 PVFGICMGHQLL 274
           P+ GIC+G Q L
Sbjct: 75  PLLGICLGFQAL 86

Length = 208

>gnl|CDD|181194 PRK08007, PRK08007, para-aminobenzoate synthase component II; Provisional

 Score = 51.1 bits (122), Expect = 8e-08
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 231 LKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           LKP  ++ S GP  P     ++ +++   G++P+ G+C+GHQ + QA G
Sbjct: 42  LKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFG 90

Length = 187

>gnl|CDD|214365 CHL00101, trpG, anthranilate synthase component 2

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 226 SETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           S+   L    ++ S GPG P     ++ ++      +P+ G+C+GHQ +G   G
Sbjct: 37  SKIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCLGHQSIGYLFG 90

Length = 190

>gnl|CDD|153212 cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 198 DFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYA-VAIVK 256
             G+  ++LR   +   +I VV              DG++   GP       Y  +  +K
Sbjct: 12  GPGLFEDLLREAGAETIEIDVVDVYAGELLPDLDDYDGLVILGGPMSVDEDDYPWLKKLK 71

Query: 257 ELL-----GKVPVFGICMGHQLLGQALG 279
           EL+        PV GIC+GHQLL +ALG
Sbjct: 72  ELIRQALAAGKPVLGICLGHQLLARALG 99

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 188

>gnl|CDD|181107 PRK07765, PRK07765, para-aminobenzoate synthase component II; Provisional

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 234 DGVLFSNGPGDPSAVPYAVAIVKELLG-KVPVFGICMGHQLLGQALG 279
           DGVL S GPG P     ++ +V+       P+ G+C+GHQ +G A G
Sbjct: 48  DGVLLSPGPGTPERAGASIDMVRACAAAGTPLLGVCLGHQAIGVAFG 94

Length = 214

>gnl|CDD|223592 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 193 RVIA-YDFGIKHN--ILRRLASYGCQI-IVVPSTWPASETLKLKPDGVLFSNGP----GD 244
           R I   DFG ++   I RRL   G     +VP T  A E     PDG++ S GP     +
Sbjct: 2   RKILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDE 61

Query: 245 PSAVPYAVAIVKELLGK-VPVFGICMGHQLLGQALG 279
              +P    ++K+      PV GIC+GHQLL +ALG
Sbjct: 62  DPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALG 97

Length = 198

>gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 203 HNILRRLASYGCQIIVVPSTWPASETLK----LKPDGVLFSNGPGDPSAVPYAVAIVKEL 258
           +N+  +L S G  +++  +  PA   ++    +    ++ S GPG PS       ++  L
Sbjct: 15  YNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRL 74

Query: 259 LGKVPVFGICMGHQLLGQALG 279
            GK+P+ GIC+GHQ + +A G
Sbjct: 75  RGKLPIIGICLGHQAIVEAYG 95

Length = 531

>gnl|CDD|215197 PLN02347, PLN02347, GMP synthetase

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 10/94 (10%)

Query: 194 VIAYDFGIK--HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGP------GDP 245
           V+  D+G +  H I RR+   G   +++  T        L P  V+ S GP      G P
Sbjct: 13  VLILDYGSQYTHLITRRVRELGVYSLLLSGTASLDRIASLNPRVVILSGGPHSVHVEGAP 72

Query: 246 SAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           +         +E    VPV GIC G QL+ Q LG
Sbjct: 73  TVPEGFFDYCRE--RGVPVLGICYGMQLIVQKLG 104

Length = 536

>gnl|CDD|181566 PRK08857, PRK08857, para-aminobenzoate synthase component II; Provisional

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 231 LKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           L P  ++ S GP  P+    ++  ++   GK+P+ G+C+GHQ + Q  G
Sbjct: 42  LNPTHLVISPGPCTPNEAGISLQAIEHFAGKLPILGVCLGHQAIAQVFG 90

Length = 193

>gnl|CDD|181635 PRK09065, PRK09065, glutamine amidotransferase; Provisional

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 21/94 (22%)

Query: 198 DFGIKHNILRRLASYGCQIIVVPS----TWPASETLKLKPDGVLFSNGPGDPSAV----P 249
           DF   H I   L      ++VV        PA +       GV+ +   G  + V     
Sbjct: 22  DFP--HWIRVALGLAEQPVVVVRVFAGEPLPAPDDF----AGVIIT---GSWAMVTDRLD 72

Query: 250 YAVAI---VKELLG-KVPVFGICMGHQLLGQALG 279
           ++      +++     +P+ GIC GHQLL  ALG
Sbjct: 73  WSERTADWLRQAAAAGMPLLGICYGHQLLAHALG 106

Length = 237

>gnl|CDD|237429 PRK13566, PRK13566, anthranilate synthase; Provisional

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 10/78 (12%)

Query: 209 LASY----GCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPS--AVPYAVAIVKELLGK- 261
           LA+Y    G ++  V   +      ++ PD V+ S GPG PS        A +   L + 
Sbjct: 542 LANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGPGRPSDFDCK---ATIDAALARN 598

Query: 262 VPVFGICMGHQLLGQALG 279
           +P+FG+C+G Q + +A G
Sbjct: 599 LPIFGVCLGLQAIVEAFG 616

Length = 720

>gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha proteobacterial clade

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 232 KPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           +PD V+ S GPG P+    A  I   L   +PVFG+C+G Q + +A G
Sbjct: 559 RPDLVVLSPGPGRPADFDVAGTIDAALARGLPVFGVCLGLQGMVEAFG 606

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate [Amino acid biosynthesis, Aromatic amino acid family]. Length = 717

>gnl|CDD|233588 TIGR01823, PabB-fungal, aminodeoxychorismate synthase, fungal clade

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 8/71 (11%)

Query: 216 IIVVPSTWPASETLKLKP--DGVLFSNGPGDPSAVPYAVAIVKELL-----GKVPVFGIC 268
           +  V S     + L+L P  D ++   GPG+P+     + I+ EL       +VPV GIC
Sbjct: 35  VTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNAQD-MGIISELWELANLDEVPVLGIC 93

Query: 269 MGHQLLGQALG 279
           +G Q L  A G
Sbjct: 94  LGFQSLCLAQG 104

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate. Length = 742

>gnl|CDD|153216 cd01745, GATase1_2, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 20/97 (20%)

Query: 203 HNILRRLASYGCQIIVVPSTWPASETLKL--KPDGVLFSNGP--------GDPSAVPYAV 252
              +  +   G   +++P      +  +     DG+L + G          +P      +
Sbjct: 22  QYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPI 81

Query: 253 ---------AIVKELL-GKVPVFGICMGHQLLGQALG 279
                    A+++  L    P+ GIC G QLL  ALG
Sbjct: 82  DPERDAFELALLRAALERGKPILGICRGMQLLNVALG 118

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 189

>gnl|CDD|219535 pfam07722, Peptidase_C26, Peptidase C26

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 19/65 (29%)

Query: 234 DGVLFSNGPGD-----------PSAVPYAV-------AIVKELLG-KVPVFGICMGHQLL 274
           DG+L + G  +           PS   Y         A+++  L    P+ GIC G QLL
Sbjct: 60  DGLLLTGGQSNVDPSLYGEEPSPSGGYYDPARDAFELALIRAALERGKPILGICRGMQLL 119

Query: 275 GQALG 279
             ALG
Sbjct: 120 NVALG 124

These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C terminus. Length = 219

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	279
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	100.0
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	100.0
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	100.0
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	100.0
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	100.0
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	100.0
KOG0370	1435	consensus Multifunctional pyrimidine synthesis pro	100.0
PF00988	131	CPSase_sm_chain: Carbamoyl-phosphate synthase smal	100.0
PRK05637	208	anthranilate synthase component II; Provisional	99.84
PRK08007	187	para-aminobenzoate synthase component II; Provisio	99.83
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	99.83
PRK06774	191	para-aminobenzoate synthase component II; Provisio	99.82
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	99.81
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	99.81
PRK05670	189	anthranilate synthase component II; Provisional	99.8
PLN02335	222	anthranilate synthase	99.8
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	99.8
CHL00101	190	trpG anthranilate synthase component 2	99.79
PRK08857	193	para-aminobenzoate synthase component II; Provisio	99.77
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	99.74
PRK06895	190	putative anthranilate synthase component II; Provi	99.73
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	99.72
PRK07765	214	para-aminobenzoate synthase component II; Provisio	99.72
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	99.68
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	99.68
PRK13566	720	anthranilate synthase; Provisional	99.67
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	99.67
PLN02347	536	GMP synthetase	99.67
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	99.67
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	99.65
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	99.65
KOG0026	223	consensus Anthranilate synthase, beta chain [Amino	99.65
PRK00758	184	GMP synthase subunit A; Validated	99.61
PRK00074	511	guaA GMP synthase; Reviewed	99.59
PLN02889	918	oxo-acid-lyase/anthranilate synthase	99.59
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	99.56
PRK06490	239	glutamine amidotransferase; Provisional	99.51
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	99.48
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	99.45
PRK07053	234	glutamine amidotransferase; Provisional	99.45
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	99.44
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	99.38
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	99.38
PRK05665	240	amidotransferase; Provisional	99.36
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	99.36
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	99.35
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	99.33
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	99.32
PRK09065	237	glutamine amidotransferase; Provisional	99.32
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	99.32
PRK08250	235	glutamine amidotransferase; Provisional	99.31
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	99.3
PRK07567	242	glutamine amidotransferase; Provisional	99.28
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	99.26
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	99.26
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	99.25
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	99.25
KOG1622	552	consensus GMP synthase [Nucleotide transport and m	99.22
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	99.21
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	99.21
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	99.21
KOG1224	767	consensus Para-aminobenzoate (PABA) synthase ABZ1	99.18
PF07722	217	Peptidase_C26: Peptidase C26; InterPro: IPR011697	99.17
PLN02617	538	imidazole glycerol phosphate synthase hisHF	99.14
COG2071	243	Predicted glutamine amidotransferases [General fun	99.11
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	99.11
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	99.08
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	99.05
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	99.03
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	98.93
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	98.91
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	98.91
KOG3179	245	consensus Predicted glutamine synthetase [Nucleoti	98.86
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	98.85
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	98.85
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	98.81
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	98.8
PRK05380	533	pyrG CTP synthetase; Validated	98.79
PRK05368	302	homoserine O-succinyltransferase; Provisional	98.67
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	98.62
PLN02327	557	CTP synthase	98.57
PRK06186	229	hypothetical protein; Validated	98.54
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	98.29
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	98.2
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	98.15
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	98.13
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	98.08
PRK00784	488	cobyric acid synthase; Provisional	97.97
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	97.95
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	97.89
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	97.83
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	97.81
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	97.71
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	97.67
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	97.64
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	97.58
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	97.57
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	97.54
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	97.53
cd03131	175	GATase1_HTS Type 1 glutamine amidotransferase (GAT	97.52
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	97.46
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	97.45
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	97.43
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	97.43
KOG2387	585	consensus CTP synthase (UTP-ammonia lyase) [Nucleo	97.41
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	97.16
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	97.16
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	97.16
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	97.16
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	97.14
TIGR00313	475	cobQ cobyric acid synthase CobQ.	97.07
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	97.06
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	96.99
PRK04155	287	chaperone protein HchA; Provisional	96.98
PHA03366	1304	FGAM-synthase; Provisional	96.97
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	96.92
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	96.91
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	96.88
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	96.86
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	96.72
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	96.59
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	96.51
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	96.45
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	96.36
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	96.33
PRK11249	752	katE hydroperoxidase II; Provisional	96.13
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	96.1
COG3442	250	Predicted glutamine amidotransferase [General func	95.9
KOG2764	247	consensus Putative transcriptional regulator DJ-1	95.5
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	95.42
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	95.04
KOG1559	340	consensus Gamma-glutamyl hydrolase [Coenzyme trans	95.04
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	94.66
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	94.42
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	93.9
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	93.8
TIGR01001	300	metA homoserine O-succinyltransferase. The apparen	91.28
PF04204	298	HTS: Homoserine O-succinyltransferase ; InterPro:	90.8
KOG3210	226	consensus Imidazoleglycerol-phosphate synthase sub	89.36
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	88.65
cd03145	217	GAT1_cyanophycinase Type 1 glutamine amidotransfer	88.61
PF10281	38	Ish1: Putative stress-responsive nuclear envelope	86.38
PF03575	154	Peptidase_S51: Peptidase family S51; InterPro: IPR	85.79
TIGR02069	250	cyanophycinase cyanophycinase. This model describe	81.86
COG4090	154	Uncharacterized protein conserved in archaea [Func	81.31
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	80.55
COG4977	328	Transcriptional regulator containing an amidase do	80.45

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=100.00  E-value=8.2e-105  Score=744.10  Aligned_cols=266  Identities=53%  Similarity=0.903  Sum_probs=245.0

Q ss_pred             cceeEEEecCCCEEEEEeeCCCcceeeeEEEeecCCcccccccCCCCCCcEEEeccCcccccCCCCCccccccceeeEEE
Q 039151            5 VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLV   84 (279)
Q Consensus         5 ~~~a~L~LedG~~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQiv~~TyP~IGNyGi~~~~~Es~~~~~~g~i   84 (279)
                      .|+|+|+|||||+|+|++|||+++++||||||||||||||+||||||+|||||||||||||||+|++|+||++|||+|+|
T Consensus         1 ~~~a~L~LeDGtvf~G~~fGA~g~~~GEvVFnTsMTGYqE~LTDPSY~gQIv~fTyP~IGNyGvn~~d~Es~~i~~~G~v   80 (368)
T COG0505           1 SMKAYLVLEDGTVFEGYSFGAEGTAVGEVVFNTSMTGYQEILTDPSYKGQIVTFTYPLIGNYGVNDEDFESDRIHAAGLV   80 (368)
T ss_pred             CCceEEEecCCCEEEEEecCCCCcEEEEEEEeCCCCcccccccCCccCceEEEEeccccccccCCchhccccCceEEEEE
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCccccCCCHHHHHHHcCceEEecCchHHHHHHhhhcCceeEEEecCCCCChHHHHHhhcCC-CCCCCCcccc
Q 039151           85 IRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISD  163 (279)
Q Consensus        85 v~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~~~~-~~~~~~lv~~  163 (279)
                      |||+|..|||||+.+||++|||++|||||+|||||||||+||++|+|+|+|.+++..+.+.+...++.+ .+.+.|||++
T Consensus        81 vre~~~~~Sn~ra~~sL~~~Lk~~gipgI~GIDTRaLtr~iR~~G~m~~~I~~~~~~~~~~~~~~~~~~~~~~~~dlv~~  160 (368)
T COG0505          81 VRELSERPSNWRATESLDEYLKEEGIPGIAGIDTRALTRKIREKGAMKGVIATGPELDPAKLLERARAFPGILGTDLVKE  160 (368)
T ss_pred             EcccccccCccccccCHHHHHHHcCCCceecccHHHHHHHHHhcCCcceEeecCcccChHHHHHHHhhcCCCCcccccce
Confidence            999999999999999999999999999999999999999999999999999987533333444444444 7888999999


Q ss_pred             cccCCeEEecCCCCCCCCCCccCCCCCccEEEEEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCC
Q 039151          164 VSGKEPFEWVESTKPDWDFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPG  243 (279)
Q Consensus       164 vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPG  243 (279)
                      |||+++|.|..     |...    ...+.+|+++|||+|+||+|.|.++||+++|||+++++++|++++|||||||||||
T Consensus       161 VSt~~~~~~~~-----~~~~----~~~~~~Vv~iD~GvK~nIlr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPG  231 (368)
T COG0505         161 VSTKEPYTWPG-----LNGG----GEPGKHVVVIDFGVKRNILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPG  231 (368)
T ss_pred             eecCCceeccc-----cccC----CCCCcEEEEEEcCccHHHHHHHHHCCCeEEEEcCCCCHHHHHhhCCCEEEEeCCCC
Confidence            99999999863     1111    22357999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHC-CCCEeeecHHHHHHHHHcC
Q 039151          244 DPSAVPYAVAIVKELLG-KVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       244 dp~~~~~~i~~Ir~~~~-~~PILGICLGhQLLa~AlG  279 (279)
                      ||..++..++.||++++ ++|+|||||||||||+|+|
T Consensus       232 DP~~~~~~i~~ik~l~~~~iPifGICLGHQllalA~G  268 (368)
T COG0505         232 DPAPLDYAIETIKELLGTKIPIFGICLGHQLLALALG  268 (368)
T ss_pred             ChhHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHhcC
Confidence            99999999999999995 5699999999999999998

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=100.00  E-value=2.1e-100  Score=735.21  Aligned_cols=278  Identities=87%  Similarity=1.421  Sum_probs=249.1

Q ss_pred             CCCcceeEEEecCCCEEEEEeeCCCcceeeeEEEeecCCcccccccCCCCCCcEEEeccCcccccCCCCCccccccceee
Q 039151            2 PWNVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLA   81 (279)
Q Consensus         2 ~~~~~~a~L~LedG~~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQiv~~TyP~IGNyGi~~~~~Es~~~~~~   81 (279)
                      ||..|+|+|+||||++|+|++||++++++||||||||||||||+||||||+|||||||||||||||||++|+||++||++
T Consensus        51 ~~~~~~a~LvLedGt~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~GQiv~~T~P~IGNyGvn~~d~ES~~~~~~  130 (415)
T PLN02771         51 PWKTSDARLVLEDGSVWKAKSFGARGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLA  130 (415)
T ss_pred             CCCCCCEEEEECCCCEEEEEEcCCCCcEEEEEEEeCCCCcCChhhcCccccchhhhhcccCccccCCCchhhcccCCcEE
Confidence            78889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeccCCCCCccccCCCHHHHHHHcCceEEecCchHHHHHHhhhcCceeEEEecCCCCChHHHHHhhcCCCCCCCCcc
Q 039151           82 GLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLI  161 (279)
Q Consensus        82 g~iv~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~~~~~~~~~~lv  161 (279)
                      |+||||+|+.|||||+++||++||+++|||||+||||||||||||++|+|+|+|++++..+.+++.+.++.+++.+.|||
T Consensus       131 G~vv~e~~~~~s~~~~~~sL~~~L~~~~ipgI~giDTRaLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~~~~~~~~~~lv  210 (415)
T PLN02771        131 GLVIRSLSISTSNWRCTKTLGDYLAERNIMGIYDVDTRAITRRLREDGSLIGVLSTEDSKTDEELLKMSRSWDIVGIDLI  210 (415)
T ss_pred             EEEeCcCCCCCCcccccCCHHHHHHHcCCcceecCcHHHHHHHHHhcCCeeEEEecCCCCCHHHHHHHHHhCCCccCCcc
Confidence            99999999999999999999999999999999999999999999999999999987542123344444444467788999


Q ss_pred             cccccCCeEEecCCCCCCCCCCccCCCCCccEEEEEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCC
Q 039151          162 SDVSGKEPFEWVESTKPDWDFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNG  241 (279)
Q Consensus       162 ~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgG  241 (279)
                      ++|||+++|.|.......|.++.....+..+||+++|||.|+||+|+|+++||+++++|++.+++++++.+|||||||||
T Consensus       211 ~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvviD~G~K~nIlr~L~~~G~~v~VvP~~~~~~ei~~~~pDGIiLSnG  290 (415)
T PLN02771        211 SGVSCKSPYEWVDKTNPEWDFNTNSRDGESYHVIAYDFGIKHNILRRLASYGCKITVVPSTWPASEALKMKPDGVLFSNG  290 (415)
T ss_pred             ceecCCCCEEecCCCcccccccccccCCCCCEEEEECCChHHHHHHHHHHcCCeEEEECCCCCHHHHhhcCCCEEEEcCC
Confidence            99999999999643223444432211122369999999999999999999999999999999988988889999999999


Q ss_pred             CCCCCCChHHHHHHHHHHCCCCEeeecHHHHHHHHHcC
Q 039151          242 PGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       242 PGdp~~~~~~i~~Ir~~~~~~PILGICLGhQLLa~AlG  279 (279)
                      ||||.+.+..++.+++++.++|+||||||||+||+|+|
T Consensus       291 PGDP~~~~~~ie~ik~l~~~iPIlGICLGhQlLa~AlG  328 (415)
T PLN02771        291 PGDPSAVPYAVETVKELLGKVPVFGICMGHQLLGQALG  328 (415)
T ss_pred             CCChhHhhHHHHHHHHHHhCCCEEEEcHHHHHHHHhcC
Confidence            99999888889999998888999999999999999998

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=100.00  E-value=9.8e-97  Score=702.83  Aligned_cols=263  Identities=55%  Similarity=0.945  Sum_probs=240.4

Q ss_pred             cceeEEEecCCCEEEEEeeCCCcceeeeEEEeecCCcccccccCCCCCCcEEEeccCcccccCCCCCccccccceeeEEE
Q 039151            5 VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLV   84 (279)
Q Consensus         5 ~~~a~L~LedG~~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQiv~~TyP~IGNyGi~~~~~Es~~~~~~g~i   84 (279)
                      +|+|+|+|||||+|+|++||++++++||||||||||||||+||||||+|||||||||||||||||++|+||++||++|+|
T Consensus         2 ~~~~~L~LedG~~~~G~~~g~~~~~~GE~vF~T~mtGY~E~lTDPSy~gQi~~~t~P~iGnyGv~~~~~es~~~~~~g~v   81 (360)
T PRK12564          2 MMKAYLVLEDGTVFEGKAFGAEGETVGEVVFNTSMTGYQEILTDPSYAGQIVTFTYPLIGNYGVNREDFESDRPHAKGLI   81 (360)
T ss_pred             CCcEEEEECCCCEEEEEecCCCccEEEEEEEECCcCCccccccCccccceeeeecccCceEECCCccccccCCccEEEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCccccCCCHHHHHHHcCceEEecCchHHHHHHhhhcCceeEEEecCCCCChHHHHHhhcCC-CCCCCCcccc
Q 039151           85 IRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISD  163 (279)
Q Consensus        85 v~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~~~~-~~~~~~lv~~  163 (279)
                      |||+|+.||||++.+||++||+++|||||+||||||||||||++|+|+|+|++++. +.+++.+.++++ +++..|+|++
T Consensus        82 v~~~~~~~s~~~~~~~l~~~l~~~~ipgi~gvDTR~l~~~iR~~G~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~~  160 (360)
T PRK12564         82 VRELSDIPSNWRSEMSLDEYLKENGIPGISGIDTRALTRKLREKGAMKGVIATEDF-DAEELLEKARAFPGLLGLDLVKE  160 (360)
T ss_pred             ECcCCCCCCccccccCHHHHHHHCCCCCCCCCcHHHHHHHHHhcCCceEEEecCCC-CHHHHHHHHHcCCCCcccCCcce
Confidence            99999999999999999999999999999999999999999999999999988532 233445554444 6778899999


Q ss_pred             cccCCeEEecCCCCCCCCCCccCCCCCccEEEEEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCC
Q 039151          164 VSGKEPFEWVESTKPDWDFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPG  243 (279)
Q Consensus       164 vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPG  243 (279)
                      |||+++|.+...           .++.+.||+++|||+|+||+|+|.++|++++++|++.+.+++.+.++||||||||||
T Consensus       161 vs~~~~~~~~~~-----------~~~~~~~I~viD~G~k~nivr~L~~~G~~v~vvp~~~~~~~i~~~~~DGIvLSgGPg  229 (360)
T PRK12564        161 VSTKEPYPWPGP-----------GGELKYKVVAIDFGVKRNILRELAERGCRVTVVPATTTAEEILALNPDGVFLSNGPG  229 (360)
T ss_pred             eCCCCCEECCCC-----------CCCCCCEEEEEeCCcHHHHHHHHHHCCCEEEEEeCCCCHHHHHhcCCCEEEEeCCCC
Confidence            999999988421           012257999999999999999999999999999999888888767899999999999


Q ss_pred             CCCCChHHHHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151          244 DPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       244 dp~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~AlG  279 (279)
                      ||.+....++.+++++ .++|+||||+|||+|+.|+|
T Consensus       230 dp~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a~G  266 (360)
T PRK12564        230 DPAALDYAIEMIRELLEKKIPIFGICLGHQLLALALG  266 (360)
T ss_pred             ChHHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHHhC
Confidence            9988778889999999 58999999999999999997

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=100.00  E-value=1.2e-96  Score=701.50  Aligned_cols=260  Identities=55%  Similarity=0.934  Sum_probs=235.7

Q ss_pred             eEEEecCCCEEEEEeeCCCcceeeeEEEeecCCcccccccCCCCCCcEEEeccCcccccCCCCCccccccceeeEEEEec
Q 039151            8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRS   87 (279)
Q Consensus         8 a~L~LedG~~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQiv~~TyP~IGNyGi~~~~~Es~~~~~~g~iv~e   87 (279)
                      |+|+||||++|+|++||++++++||||||||||||||+||||||+|||||||||||||||||++|+||++||++|+||||
T Consensus         1 ~~L~LedG~~~~G~~~g~~~~~~GEvvF~T~mtGYqE~ltDPSy~gQi~~~T~P~iGNyG~~~~~~es~~~~~~g~iv~~   80 (358)
T TIGR01368         1 AYLVLEDGTVFRGYSFGAEGTVAGEVVFNTGMTGYQEILTDPSYKGQIVVFTYPLIGNYGVNDEDAESKGIHVSGLVVRE   80 (358)
T ss_pred             CEEEECCCCEEEEEecCCCccEEEEEEEeCCCCCCChhhcCCcccchhhhhccCCcceeCCCchhhcccCCcEEEEEECC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccccCCCHHHHHHHcCceEEecCchHHHHHHhhhcCceeEEEecCCCCChHHHHHhhc-CCCCCCCCccccccc
Q 039151           88 LSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSR-SWDIVGIDLISDVSG  166 (279)
Q Consensus        88 ~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~~-~~~~~~~~lv~~vs~  166 (279)
                      +|+.|||||+++||++||+++|||||+||||||||||||++|+|+|+|++++.+ .+++.+.++ ...+.+.|||++|||
T Consensus        81 ~~~~~s~~~~~~~l~~~l~~~~i~gi~gvDTR~lt~~iR~~G~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~v~~vs~  159 (358)
T TIGR01368        81 LSDRYSNWRATESLDQFLKRHGIPGIYGVDTRALVKKIREKGTMKGVISTEDSN-DEELVQKASVSPDIDGINLVAEVST  159 (358)
T ss_pred             CCCCCCcccccCCHHHHHHHCCCceEeCCcHHHHHHHHHhcCCeeEEEecCCCC-hHHHHHHHHhCCCCccCCccceecc
Confidence            999999999999999999999999999999999999999999999999875422 223333333 335667899999999


Q ss_pred             CCeEEecCCCCCCCCCCccCCCCCccEEEEEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCC
Q 039151          167 KEPFEWVESTKPDWDFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPS  246 (279)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~  246 (279)
                      +++|.|...           ..+.++||+++|||+|+||+|+|+++|++++++|++.+++++.+..|||||||||||||.
T Consensus       160 ~~~~~~~~~-----------~~~~~~~i~viD~G~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~pDGIiLSgGPgdp~  228 (358)
T TIGR01368       160 KEPYTWGQK-----------RGGKKKRVVVIDFGVKQNILRRLVKRGCEVTVVPYDTDAEEIKKYNPDGIFLSNGPGDPA  228 (358)
T ss_pred             CCCEEeCCC-----------CCCCccEEEEEeCCcHHHHHHHHHHCCCEEEEEcCCCCHHHHHhhCCCEEEECCCCCCHH
Confidence            999998420           012236999999999999999999999999999999888888777899999999999998


Q ss_pred             CChHHHHHHHHHHCCCCEeeecHHHHHHHHHcC
Q 039151          247 AVPYAVAIVKELLGKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       247 ~~~~~i~~Ir~~~~~~PILGICLGhQLLa~AlG  279 (279)
                      +...+++.++++++++|+||||||||+|+.|+|
T Consensus       229 ~~~~~i~~i~~~~~~~PILGIClG~QlLa~a~G  261 (358)
T TIGR01368       229 AVEPAIETIRKLLEKIPIFGICLGHQLLALAFG  261 (358)
T ss_pred             HHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhC
Confidence            878889999999889999999999999999997

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=100.00  E-value=2.1e-96  Score=703.96  Aligned_cols=273  Identities=45%  Similarity=0.768  Sum_probs=241.0

Q ss_pred             ceeEEEecCCCEEEEEeeCCCcceeeeEEEeecCCcccccccCCCCCCcEEEeccCcccccCCCCCccccccceeeEEEE
Q 039151            6 ANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVI   85 (279)
Q Consensus         6 ~~a~L~LedG~~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQiv~~TyP~IGNyGi~~~~~Es~~~~~~g~iv   85 (279)
                      .+|+|+||||++|+|++||++++++||||||||||||||+||||||+|||||||||||||||||++|+||++||++|+||
T Consensus         5 ~~~~L~LedG~~~~G~~~G~~~~~~GEvvF~T~mtGYqE~lTDPSy~gQiv~~T~P~iGNyGv~~~~~es~~~~~~g~iv   84 (382)
T CHL00197          5 IPAILVLEDGTYYRGWSFSNPITTIGEVVFNTGMTGYQEIITDPSYFEQIVTFTYPEIGNTGINLEDIESVKIQVKGIIA   84 (382)
T ss_pred             CcEEEEECCCCEEEEEeCCCCccEEEEEEEeCCCCCCCccccCcccccceeeeccCCcceecCChhhhcccCccEEEEEE
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCccccCCCHHHHHHHcCceEEecCchHHHHHHhhhcCceeEEEecCCCCChHHHHHhhcCC-CCCCCCccccc
Q 039151           86 RSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDV  164 (279)
Q Consensus        86 ~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~~~~-~~~~~~lv~~v  164 (279)
                      ||+|+.|||||+++||++||+++|||||+||||||||||||++|+|+|+|+++..+ .+++.+.++.+ .+++.|+|++|
T Consensus        85 ~e~~~~~s~~~~~~sl~~~l~~~~ipgi~gvDTR~lt~~iR~~G~~~g~i~~~~~~-~~~~~~~~~~~~~~~~~~~v~~v  163 (382)
T CHL00197         85 KNICKSSSNWRQQESLVSYLQRHKIPFIFGIDTRALTQHLRRFGTMNGCISNQNLN-LSYLRAKIKESPHMPSSDLIPRV  163 (382)
T ss_pred             CCCCCCCCcccccCCHHHHHHHCCCceEeCCcHHHHHHHHHhcCCceEEEEcCCCC-hHHHHHHHHcCCCCccCCcccee
Confidence            99999999999999999999999999999999999999999999999999875422 23333333333 67789999999


Q ss_pred             ccCCeEEecCCCCCCCCCCc--cCCCCCccEEEEEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCC
Q 039151          165 SGKEPFEWVESTKPDWDFNT--HERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGP  242 (279)
Q Consensus       165 s~~~~~~~~~~~~~~~~~~~--~~~~~~~~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGP  242 (279)
                      ||+++|.|.......|...+  ...++.++||++||||+|+||+|+|+++|+++.++|++.+.+++.+.+||||||||||
T Consensus       164 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viD~g~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~dgIilSgGP  243 (382)
T CHL00197        164 TTSSYYEWDEKSHPSFYLADNKRPHSSYQLKIIVIDFGVKYNILRRLKSFGCSITVVPATSPYQDILSYQPDGILLSNGP  243 (382)
T ss_pred             cCCCCEEecCCCccccccccccccccCCCCEEEEEECCcHHHHHHHHHHCCCeEEEEcCCCCHHHHhccCCCEEEEcCCC
Confidence            99999998532110110000  0112235799999999999999999999999999999988888877899999999999


Q ss_pred             CCCCCChHHHHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151          243 GDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       243 Gdp~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~AlG  279 (279)
                      |+|.+....++.+++++ .++|+||||||||+|+.|+|
T Consensus       244 g~p~~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a~G  281 (382)
T CHL00197        244 GDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALE  281 (382)
T ss_pred             CChhHHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHHhC
Confidence            99998778888999988 68999999999999999997

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=100.00  E-value=1.3e-96  Score=700.41  Aligned_cols=255  Identities=40%  Similarity=0.730  Sum_probs=235.6

Q ss_pred             ceeEEEecCCCEEEEEeeCCCcceeeeEEEeecCCcccccccCCCCCCcEEEeccCcccccCCCCCccccccceeeEEEE
Q 039151            6 ANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVI   85 (279)
Q Consensus         6 ~~a~L~LedG~~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQiv~~TyP~IGNyGi~~~~~Es~~~~~~g~iv   85 (279)
                      |+|+|+|||||+|+|++||++++++||||||||||||||+||||||+|||||||||||||||||++|+||++||++|+||
T Consensus         1 m~~~l~LedG~~~~g~~~g~~~~~~GE~vf~T~mtGYqe~ltDpsy~gQi~~~t~P~iGnyGi~~~~~es~~~~~~g~vv   80 (354)
T PRK12838          1 MKAYLILEDGTVFEGELIGAPIDVTGEIVFNTGMTGYQEVLTDPSYKGQIVVFTYPLIGNYGINADDYESKQPQVKGVIV   80 (354)
T ss_pred             CCeEEEeCCCCEEEEEECCCCCcEEEEEEEeCCCCCCCccccCCccccceeecccCCccEeCCCchhhcccCceEEEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCccccCCCHHHHHHHcCceEEecCchHHHHHHhhhcCceeEEEecCCCCChHHHHHhhcCCCCCCCCcccccc
Q 039151           86 RSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS  165 (279)
Q Consensus        86 ~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~vs  165 (279)
                      ||+|+.|||||+++||++||+++|||||+||||||||||||++|+|+|+|+++.  + ++..+.++.+ +++.|||++||
T Consensus        81 ~~~~~~~s~~~~~~~l~~~l~~~~i~gi~giDTR~lt~~lR~~G~~~~~i~~~~--~-~~~~~~~~~~-~~~~~~v~~vs  156 (354)
T PRK12838         81 YELSREGSHYRAKQSLDDFLKEWNIPGISGVDTRALVKHIREKGTMKASITTTD--D-AHAFDQIKAL-VLPKNVVAQVS  156 (354)
T ss_pred             CcCCCCCCcccccCCHHHHHHHCCCCcccCCCHHHHHHHHHHcCCceEEEecCC--c-HHHHHHHHhh-hccCCcccEEE
Confidence            999999999999999999999999999999999999999999999999998853  1 2333444444 67789999999


Q ss_pred             cCCeEEecCCCCCCCCCCccCCCCCccEEEEEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCC
Q 039151          166 GKEPFEWVESTKPDWDFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDP  245 (279)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp  245 (279)
                      |+++|.+.               ..+.+|+++|||+|+||+++|.++|++++++|++.+.+++.+.++||||||||||||
T Consensus       157 ~~~~~~~~---------------~~~~~V~viD~G~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~DGIiLsgGPgdp  221 (354)
T PRK12838        157 TKEPYTYG---------------NGGKHVALIDFGYKKSILRSLSKRGCKVTVLPYDTSLEEIKNLNPDGIVLSNGPGDP  221 (354)
T ss_pred             cCCCEEeC---------------CCCCEEEEECCCHHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEEcCCCCCh
Confidence            99999984               234699999999999999999999999999999888788776789999999999999


Q ss_pred             CCChHHHHHHHHHHCCCCEeeecHHHHHHHHHcC
Q 039151          246 SAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       246 ~~~~~~i~~Ir~~~~~~PILGICLGhQLLa~AlG  279 (279)
                      .+....++.+++++.++|+||||||||+|+.|+|
T Consensus       222 ~~~~~~~~~i~~~~~~~PvlGIClG~QlLa~a~G  255 (354)
T PRK12838        222 KELQPYLPEIKKLISSYPILGICLGHQLIALALG  255 (354)
T ss_pred             HHhHHHHHHHHHHhcCCCEEEECHHHHHHHHHhC
Confidence            8877788899998866999999999999999997

>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]

Probab=100.00  E-value=1.1e-81  Score=634.18  Aligned_cols=248  Identities=48%  Similarity=0.771  Sum_probs=231.6

Q ss_pred             eeEEEecCCCEEEEEeeCCCcceeeeEEEeecCCcccccccCCCCCCcEEEeccCcccccCCCC--Cc------cccccc
Q 039151            7 NARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNF--DD------EESRQC   78 (279)
Q Consensus         7 ~a~L~LedG~~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQiv~~TyP~IGNyGi~~--~~------~Es~~~   78 (279)
                      .+.|+||||++|.|++||++..+.||+||||||+||||+||||||+|||++||||+|||||+|.  .|      +||.+|
T Consensus         2 ~s~L~LeDGsv~~G~SFGA~~svaGE~VFqTgmvGYpEslTDPSY~gQiLv~T~PlIGNyGVP~~~~DE~l~~~fES~~I   81 (1435)
T KOG0370|consen    2 RSTLVLEDGSVLPGYSFGAPKSVAGELVFQTGMVGYPESLTDPSYKGQILVFTYPLIGNYGVPPDARDEGLLKHFESGQI   81 (1435)
T ss_pred             ceEEEeccCCeecccccCCCCceeeEEEEecCCcCCccccCCccccceEEEEecccccCCCCCCCccccccccccccCce
Confidence            4589999999999999999999999999999999999999999999999999999999999993  23      499999


Q ss_pred             eeeEEEEeccCCCCCccccCCCHHHHHHHcCceEEecCchHHHHHHhhhcCceeEEEecCCCCChHHHHHhhcCCCCCCC
Q 039151           79 FLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGI  158 (279)
Q Consensus        79 ~~~g~iv~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                      |++|+||+++|..+|||++.+||.+||+++|||||+|||||+|||+|||+|+|.|+|+.+....        ..++++.+
T Consensus        82 ~vaglVV~~ys~~ysHW~a~~SL~eWlq~~gVp~i~gvDTRaLtk~lReqGSmLgkl~~e~~~~--------~~vdpn~~  153 (1435)
T KOG0370|consen   82 HVAGLVVGEYSIEYSHWLATKSLGEWLQEEGVPGIYGVDTRALTKKLREQGSMLGKLSIEKSPV--------LFVDPNKR  153 (1435)
T ss_pred             EEEEEEhhhhccchhhhhhhhhHHHHHHhcCCCccccccHHHHHHHHHhcCcceeEEEecCCCC--------cccCCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999876432        14589999


Q ss_pred             CcccccccCCeEEecCCCCCCCCCCccCCCCCccEEEEEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEE
Q 039151          159 DLISDVSGKEPFEWVESTKPDWDFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF  238 (279)
Q Consensus       159 ~lv~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiL  238 (279)
                      ||+++||+|+|+.|.              .|+..+|+++|||+|.|++|+|.++|++++|+||+.++.+.   +||||||
T Consensus       154 nLvs~VS~Kep~~y~--------------~Gk~~~I~aiDcG~K~N~IRcL~~RGa~vtVvPw~~~i~~~---~yDGlfl  216 (1435)
T KOG0370|consen  154 NLVSQVSTKEPKVYG--------------DGKSLRILAIDCGLKYNQIRCLVKRGAEVTVVPWDYPIAKE---EYDGLFL  216 (1435)
T ss_pred             cchhhheeccceEEc--------------CCcccEEEEcccCchHHHHHHHHHhCceEEEecCCcccccc---ccceEEE
Confidence            999999999999985              35678999999999999999999999999999999876653   8999999


Q ss_pred             cCCCCCCCCChHHHHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151          239 SNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       239 SgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~AlG  279 (279)
                      |||||||..++..++.+++++ .++|+||||+|||+||+|.|
T Consensus       217 SNGPGdPe~~~~~v~~vr~lL~~~~PvfGIClGHQllA~AaG  258 (1435)
T KOG0370|consen  217 SNGPGDPELCPLLVQNVRELLESNVPVFGICLGHQLLALAAG  258 (1435)
T ss_pred             eCCCCCchhhHHHHHHHHHHHhCCCCeEEEehhhHHHHHhhC
Confidence            999999999999999999999 56999999999999999987

>PF00988 CPSase_sm_chain: Carbamoyl-phosphate synthase small chain, CPSase domain; InterPro: IPR002474 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=100.00  E-value=4e-73  Score=468.78  Aligned_cols=131  Identities=56%  Similarity=0.883  Sum_probs=104.1

Q ss_pred             ceeEEEecCCCEEEEEeeCCCcceeeeEEEeecCCcccccccCCCCCCcEEEeccCcccccCCCCCccccccceeeEEEE
Q 039151            6 ANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVI   85 (279)
Q Consensus         6 ~~a~L~LedG~~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQiv~~TyP~IGNyGi~~~~~Es~~~~~~g~iv   85 (279)
                      |+|+|+||||++|+|++||+++++.||||||||||||||+||||||+||||+||||||||||+|++|+||++||++|+||
T Consensus         1 M~a~LvLeDG~~f~G~~~G~~~~~~GEvVFnT~MtGYqE~lTDPSY~gQIlvfTyP~IGNyGv~~~~~ES~~~~~~g~iv   80 (131)
T PF00988_consen    1 MKAYLVLEDGTVFEGKSFGAPGTVTGEVVFNTGMTGYQEILTDPSYAGQILVFTYPLIGNYGVNEEDFESDRIHVKGLIV   80 (131)
T ss_dssp             -EEEEEETTS-EEEEEE-SBSEEEEEEEEEE--SS-HHHHHT-GGGBTEEEEESSSB--TT-B-GGG-SSSS--BSEEE-
T ss_pred             CCEEEEECCCCEEEEEEecCCCcEEEEEEEEccccCCchhhcCCcCCceEEEEeccCCeEEcCCcccCCCCceeeeeeee
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCccccCCCHHHHHHHcCceEEecCchHHHHHHhhhcCceeEEEe
Q 039151           86 RSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLS  136 (279)
Q Consensus        86 ~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~m~g~i~  136 (279)
                      ||+|+.||||++++||++||++++||||+||||||||||||++|+|+|+|+
T Consensus        81 ~e~~~~~s~~~~~~sL~~~L~~~~ipgi~gvDTRaLt~~lR~~G~m~g~I~  131 (131)
T PF00988_consen   81 RELSDIPSHWRSEMSLDEWLKEHGIPGISGVDTRALTRKLREKGSMKGVIT  131 (131)
T ss_dssp             SB--SS---TT-SB-HHHHHHHTT-EEEESS-HHHHHHHHHHH--EEEEEE
T ss_pred             ccccCCCccccccCCHHHHHHHCCCeeeeCCcHHHHHHHHHhcCCceEEEC
Confidence            999999999999999999999999999999999999999999999999985

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the small subunit of carbamoyl phosphate synthase. The small subunit has a 3-layer beta/beta/alpha structure, and is thought to be mobile in most proteins that carry it. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity.; GO: 0006807 nitrogen compound metabolic process; PDB: 1CE8_B 1KEE_B 1CS0_D 1T36_D 1M6V_H 1A9X_F 1JDB_I 1BXR_F 1C3O_B 1C30_F ....

>PRK05637 anthranilate synthase component II; Provisional

Probab=99.84  E-value=8.4e-21  Score=169.06  Aligned_cols=88  Identities=32%  Similarity=0.554  Sum_probs=78.6

Q ss_pred             cEEEEEEc--CchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecH
Q 039151          192 YRVIAYDF--GIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICM  269 (279)
Q Consensus       192 ~~I~viD~--G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICL  269 (279)
                      .||++||+  |+++|+++.|+++|++++++|++.+.+++.+.+||+||||||||+|.+.....+.++.+.+++|+||||+
T Consensus         2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~~~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGICl   81 (208)
T PRK05637          2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPVEEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGICL   81 (208)
T ss_pred             CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCCHHHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEEcH
Confidence            47999999  7899999999999999999999888888877799999999999999876555667766557899999999


Q ss_pred             HHHHHHHHcC
Q 039151          270 GHQLLGQALG  279 (279)
Q Consensus       270 GhQLLa~AlG  279 (279)
                      |||+|+.|+|
T Consensus        82 G~Qlla~alG   91 (208)
T PRK05637         82 GFQALLEHHG   91 (208)
T ss_pred             HHHHHHHHcC
Confidence            9999999997

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=99.83  E-value=1.2e-20  Score=165.08  Aligned_cols=87  Identities=24%  Similarity=0.597  Sum_probs=77.4

Q ss_pred             EEEEEEc--CchHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecH
Q 039151          193 RVIAYDF--GIKHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICM  269 (279)
Q Consensus       193 ~I~viD~--G~k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICL  269 (279)
                      +|++||+  .+++|++++|+++|+++.+++++ .+.+++.+.+||+||||||||+|.+.....+.++.+..++|+||||+
T Consensus         1 ~il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGICl   80 (187)
T PRK08007          1 MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCL   80 (187)
T ss_pred             CEEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEECH
Confidence            4899998  46999999999999999999987 47777776789999999999999987777788887557999999999


Q ss_pred             HHHHHHHHcC
Q 039151          270 GHQLLGQALG  279 (279)
Q Consensus       270 GhQLLa~AlG  279 (279)
                      |||+||.|+|
T Consensus        81 G~Q~la~a~G   90 (187)
T PRK08007         81 GHQAMAQAFG   90 (187)
T ss_pred             HHHHHHHHcC
Confidence            9999999998

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=99.83  E-value=2.2e-20  Score=163.47  Aligned_cols=88  Identities=27%  Similarity=0.640  Sum_probs=80.8

Q ss_pred             cEEEEEEc--CchHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeec
Q 039151          192 YRVIAYDF--GIKHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGIC  268 (279)
Q Consensus       192 ~~I~viD~--G~k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGIC  268 (279)
                      ++|++||+  .+.+|++++|++.|++++|++++ .+.+++.+.+||+|+||+|||+|.+.....+.|+++.+++|+||||
T Consensus         2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G~~~~~i~~~~~~~PiLGVC   81 (191)
T COG0512           2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGISLELIRRFAGRIPILGVC   81 (191)
T ss_pred             ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEEC
Confidence            58999998  67999999999999999999987 5666677788999999999999998888999999997789999999


Q ss_pred             HHHHHHHHHcC
Q 039151          269 MGHQLLGQALG  279 (279)
Q Consensus       269 LGhQLLa~AlG  279 (279)
                      ||||.|++|+|
T Consensus        82 LGHQai~~~fG   92 (191)
T COG0512          82 LGHQAIAEAFG   92 (191)
T ss_pred             ccHHHHHHHhC
Confidence            99999999998

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=99.82  E-value=4.6e-20  Score=161.31  Aligned_cols=87  Identities=26%  Similarity=0.583  Sum_probs=76.9

Q ss_pred             EEEEEEcC--chHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecH
Q 039151          193 RVIAYDFG--IKHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICM  269 (279)
Q Consensus       193 ~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICL  269 (279)
                      +|++||+.  +.+|+++.|+++|+++++++++ .+++++.+.+||+||||||||+|.+.......++.+..++|+||||+
T Consensus         1 ~il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGIC~   80 (191)
T PRK06774          1 MLLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGVCL   80 (191)
T ss_pred             CEEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEECH
Confidence            38999984  5899999999999999999987 57888877899999999999999887666777776557999999999


Q ss_pred             HHHHHHHHcC
Q 039151          270 GHQLLGQALG  279 (279)
Q Consensus       270 GhQLLa~AlG  279 (279)
                      |||+||.|+|
T Consensus        81 G~Qlla~~~G   90 (191)
T PRK06774         81 GHQALGQAFG   90 (191)
T ss_pred             HHHHHHHHhC
Confidence            9999999997

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=99.81  E-value=1.1e-19  Score=159.07  Aligned_cols=87  Identities=28%  Similarity=0.563  Sum_probs=76.9

Q ss_pred             EEEEEEcC--chHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecH
Q 039151          193 RVIAYDFG--IKHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICM  269 (279)
Q Consensus       193 ~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICL  269 (279)
                      +|++||+.  +++|++++|+++|+++.++|++ .+.+++.+.+|||||||||||+|.+.....+.++++..++|+||||+
T Consensus         1 ~il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGIC~   80 (188)
T TIGR00566         1 MVLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGVCL   80 (188)
T ss_pred             CEEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEECH
Confidence            38999984  5899999999999999999976 46788877789999999999999876666788888756899999999


Q ss_pred             HHHHHHHHcC
Q 039151          270 GHQLLGQALG  279 (279)
Q Consensus       270 GhQLLa~AlG  279 (279)
                      |||+|+.|+|
T Consensus        81 G~Qll~~~~G   90 (188)
T TIGR00566        81 GHQAMGQAFG   90 (188)
T ss_pred             HHHHHHHHcC
Confidence            9999999997

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=99.81  E-value=1.1e-19  Score=160.21  Aligned_cols=87  Identities=28%  Similarity=0.600  Sum_probs=76.4

Q ss_pred             EEEEEEcC--chHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecH
Q 039151          193 RVIAYDFG--IKHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICM  269 (279)
Q Consensus       193 ~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICL  269 (279)
                      +|++||+.  +.+|+.++|+++|+++.+++++ .+.+++.+.+||+||||||||+|.+.....+.++.+..++|+|||||
T Consensus         1 ~il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGICl   80 (195)
T PRK07649          1 MILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGVCL   80 (195)
T ss_pred             CEEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEEEcH
Confidence            48999984  5899999999999999999987 56677766789999999999999987666777776557999999999


Q ss_pred             HHHHHHHHcC
Q 039151          270 GHQLLGQALG  279 (279)
Q Consensus       270 GhQLLa~AlG  279 (279)
                      |||+|+.|+|
T Consensus        81 G~Qlla~~lG   90 (195)
T PRK07649         81 GHQSIAQVFG   90 (195)
T ss_pred             HHHHHHHHcC
Confidence            9999999997

>PRK05670 anthranilate synthase component II; Provisional

Probab=99.80  E-value=1.5e-19  Score=157.86  Aligned_cols=87  Identities=31%  Similarity=0.666  Sum_probs=74.9

Q ss_pred             EEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCC-ChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecH
Q 039151          193 RVIAYDFGI--KHNILRRLASYGCQIIVVPSTW-PASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICM  269 (279)
Q Consensus       193 ~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~-~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICL  269 (279)
                      +|++||++.  ++++.++|+++|++++++|++. +.+++.+.+|||||||||||+|.+.....+.++++..++|+||||+
T Consensus         1 ~iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGICl   80 (189)
T PRK05670          1 MILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGVCL   80 (189)
T ss_pred             CEEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECH
Confidence            489999974  8999999999999999999874 5556656679999999999999876666677776546899999999


Q ss_pred             HHHHHHHHcC
Q 039151          270 GHQLLGQALG  279 (279)
Q Consensus       270 GhQLLa~AlG  279 (279)
                      |||+|+.|+|
T Consensus        81 G~Qlla~alG   90 (189)
T PRK05670         81 GHQAIGEAFG   90 (189)
T ss_pred             HHHHHHHHhC
Confidence            9999999997

>PLN02335 anthranilate synthase

Probab=99.80  E-value=1.8e-19  Score=161.90  Aligned_cols=88  Identities=34%  Similarity=0.594  Sum_probs=75.7

Q ss_pred             cEEEEEEc--CchHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeec
Q 039151          192 YRVIAYDF--GIKHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGIC  268 (279)
Q Consensus       192 ~~I~viD~--G~k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGIC  268 (279)
                      .+|++||+  ++++||.++|+++|+++++++++ .+.+++...+||+||||||||+|.+.....+.++++-.++|+||||
T Consensus        19 ~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGIC   98 (222)
T PLN02335         19 GPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGVC   98 (222)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEEec
Confidence            58999998  56999999999999999999986 4677776678999999999999987655556665543689999999


Q ss_pred             HHHHHHHHHcC
Q 039151          269 MGHQLLGQALG  279 (279)
Q Consensus       269 LGhQLLa~AlG  279 (279)
                      ||||+|+.++|
T Consensus        99 lG~QlLa~alG  109 (222)
T PLN02335         99 MGLQCIGEAFG  109 (222)
T ss_pred             HHHHHHHHHhC
Confidence            99999999997

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=99.80  E-value=2.9e-19  Score=154.73  Aligned_cols=86  Identities=57%  Similarity=1.042  Sum_probs=78.1

Q ss_pred             EEEEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHHHH
Q 039151          194 VIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQ  272 (279)
Q Consensus       194 I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGhQ  272 (279)
                      |+++|||.++|+.++|++.|++++++|++.+.+++...++|||||||||++|.+.....+.+++++ .++|+||||+|||
T Consensus         1 i~i~d~g~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~G~Q   80 (178)
T cd01744           1 VVVIDFGVKHNILRELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGHQ   80 (178)
T ss_pred             CEEEecCcHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECHHHH
Confidence            589999999999999999999999999987766665568999999999999988778888999998 5799999999999


Q ss_pred             HHHHHcC
Q 039151          273 LLGQALG  279 (279)
Q Consensus       273 LLa~AlG  279 (279)
                      +|+.++|
T Consensus        81 ~l~~~~G   87 (178)
T cd01744          81 LLALALG   87 (178)
T ss_pred             HHHHHcC
Confidence            9999997

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>CHL00101 trpG anthranilate synthase component 2

Probab=99.79  E-value=4.9e-19  Score=155.04  Aligned_cols=87  Identities=22%  Similarity=0.473  Sum_probs=73.8

Q ss_pred             EEEEEEcCc--hHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecH
Q 039151          193 RVIAYDFGI--KHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICM  269 (279)
Q Consensus       193 ~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICL  269 (279)
                      +|++||++.  ++|+.|.|+++|+++.+++++ .+.+++...+|||||||||||+|.+.....+.++.+..++|+||||+
T Consensus         1 ~iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGICl   80 (190)
T CHL00101          1 MILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCL   80 (190)
T ss_pred             CEEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEch
Confidence            489999974  899999999999999999976 56767766689999999999999876555555554337999999999


Q ss_pred             HHHHHHHHcC
Q 039151          270 GHQLLGQALG  279 (279)
Q Consensus       270 GhQLLa~AlG  279 (279)
                      |||+||.|+|
T Consensus        81 G~Qlla~~~G   90 (190)
T CHL00101         81 GHQSIGYLFG   90 (190)
T ss_pred             hHHHHHHHhC
Confidence            9999999997

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=99.77  E-value=1.4e-18  Score=152.43  Aligned_cols=87  Identities=25%  Similarity=0.526  Sum_probs=75.2

Q ss_pred             EEEEEEcC--chHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecH
Q 039151          193 RVIAYDFG--IKHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICM  269 (279)
Q Consensus       193 ~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICL  269 (279)
                      +|++||+.  +++|++++|+++|+++.+++++ .+.+++.+.+||++|+||||++|.+.....+.++.+..++|+||||+
T Consensus         1 ~il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~~~~~~~i~~~~~~~PiLGICl   80 (193)
T PRK08857          1 MLLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGISLQAIEHFAGKLPILGVCL   80 (193)
T ss_pred             CEEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHCcchHHHHHHhcCCCCEEEEcH
Confidence            48999984  5999999999999999999987 46666666689999999999999876666777776447999999999


Q ss_pred             HHHHHHHHcC
Q 039151          270 GHQLLGQALG  279 (279)
Q Consensus       270 GhQLLa~AlG  279 (279)
                      |||+||.|+|
T Consensus        81 G~Qlia~a~G   90 (193)
T PRK08857         81 GHQAIAQVFG   90 (193)
T ss_pred             HHHHHHHHhC
Confidence            9999999997

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=99.74  E-value=5.5e-18  Score=146.88  Aligned_cols=85  Identities=35%  Similarity=0.674  Sum_probs=75.4

Q ss_pred             EEEEcC--chHHHHHHHHHCCCeEEEEcCCCChhhhh--ccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecH
Q 039151          195 IAYDFG--IKHNILRRLASYGCQIIVVPSTWPASETL--KLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICM  269 (279)
Q Consensus       195 ~viD~G--~k~~I~r~L~~~G~~v~vvp~~~~~~~i~--~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICL  269 (279)
                      ++||+|  .++++.++|+++|+++++++++.+.++..  ..++|||||||||+++.+....++.++++. .++|+||||+
T Consensus         1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~   80 (192)
T PF00117_consen    1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGICL   80 (192)
T ss_dssp             EEEESSHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETH
T ss_pred             CEEeCCHHHHHHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCccccccccccccccccccceEEEEEee
Confidence            689998  68999999999999999999876554442  468999999999999998777888899888 5999999999


Q ss_pred             HHHHHHHHcC
Q 039151          270 GHQLLGQALG  279 (279)
Q Consensus       270 GhQLLa~AlG  279 (279)
                      |||+||.|+|
T Consensus        81 G~Q~la~~~G   90 (192)
T PF00117_consen   81 GHQILAHALG   90 (192)
T ss_dssp             HHHHHHHHTT
T ss_pred             hhhhhHHhcC
Confidence            9999999997

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=99.73  E-value=1.9e-17  Score=144.79  Aligned_cols=86  Identities=23%  Similarity=0.408  Sum_probs=72.2

Q ss_pred             cEEEEEEcC--chHHHHHHHHHCCCeEEEEcCCC-ChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeec
Q 039151          192 YRVIAYDFG--IKHNILRRLASYGCQIIVVPSTW-PASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGIC  268 (279)
Q Consensus       192 ~~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~~-~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGIC  268 (279)
                      +||++||++  +.+|+.++|+++|+++.+++.+. +.+++  .++|+|||+||||+|...+...+.|+++..++|+||||
T Consensus         2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l--~~~d~iIi~gGp~~~~~~~~~~~~i~~~~~~~PiLGIC   79 (190)
T PRK06895          2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEV--ENFSHILISPGPDVPRAYPQLFAMLERYHQHKSILGVC   79 (190)
T ss_pred             cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHh--ccCCEEEECCCCCChHHhhHHHHHHHHhcCCCCEEEEc
Confidence            689999996  47899999999999999998642 34444  36899999999998876666677787643799999999


Q ss_pred             HHHHHHHHHcC
Q 039151          269 MGHQLLGQALG  279 (279)
Q Consensus       269 LGhQLLa~AlG  279 (279)
                      ||||+||.|+|
T Consensus        80 lG~Qlla~~~G   90 (190)
T PRK06895         80 LGHQTLCEFFG   90 (190)
T ss_pred             HHHHHHHHHhC
Confidence            99999999987

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=99.72  E-value=3.4e-17  Score=142.60  Aligned_cols=85  Identities=36%  Similarity=0.613  Sum_probs=73.2

Q ss_pred             EEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHH
Q 039151          194 VIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMG  270 (279)
Q Consensus       194 I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLG  270 (279)
                      |++||+|.  .+++.+.|+++|++++++|++.+.+++.+.++|||||+|||+++.+. .....++.++ .++|+||||+|
T Consensus         1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~glii~Gg~~~~~~~-~~~~~i~~~~~~~~PilGIC~G   79 (188)
T TIGR00888         1 ILVLDFGSQYTQLIARRLRELGVYSELVPNTTPLEEIREKNPKGIILSGGPSSVYAE-NAPRADEKIFELGVPVLGICYG   79 (188)
T ss_pred             CEEEECCchHHHHHHHHHHHcCCEEEEEeCCCCHHHHhhcCCCEEEECCCCCCcCcC-CchHHHHHHHhCCCCEEEECHH
Confidence            68999987  46699999999999999999887777766667899999999998764 3456778877 69999999999


Q ss_pred             HHHHHHHcC
Q 039151          271 HQLLGQALG  279 (279)
Q Consensus       271 hQLLa~AlG  279 (279)
                      ||+|+.|+|
T Consensus        80 ~Qll~~~lg   88 (188)
T TIGR00888        80 MQLMAKQLG   88 (188)
T ss_pred             HHHHHHhcC
Confidence            999999987

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=99.72  E-value=3.2e-17  Score=146.50  Aligned_cols=88  Identities=30%  Similarity=0.562  Sum_probs=75.3

Q ss_pred             cEEEEEEcC--chHHHHHHHHHCCCeEEEEcCCCC-hhhhh--ccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEe
Q 039151          192 YRVIAYDFG--IKHNILRRLASYGCQIIVVPSTWP-ASETL--KLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVF  265 (279)
Q Consensus       192 ~~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~~~-~~~i~--~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PIL  265 (279)
                      +||+++|++  ..+++.++|+++|+++.+++++.+ .++..  ..++|||||||||++|.+....++++++++ .++|+|
T Consensus         1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiL   80 (214)
T PRK07765          1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLL   80 (214)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEE
Confidence            589999995  478899999999999999998753 22332  137999999999999987777788999998 689999


Q ss_pred             eecHHHHHHHHHcC
Q 039151          266 GICMGHQLLGQALG  279 (279)
Q Consensus       266 GICLGhQLLa~AlG  279 (279)
                      |||+|||+|+.|+|
T Consensus        81 GIC~G~Qlla~a~G   94 (214)
T PRK07765         81 GVCLGHQAIGVAFG   94 (214)
T ss_pred             EEccCHHHHHHHhC
Confidence            99999999999998

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=99.68  E-value=1.8e-16  Score=137.39  Aligned_cols=85  Identities=32%  Similarity=0.588  Sum_probs=69.2

Q ss_pred             EEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhh-hccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecH
Q 039151          194 VIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASET-LKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICM  269 (279)
Q Consensus       194 I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i-~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICL  269 (279)
                      |+++|+|.  .+++.+.|+++|+++.+++++.+.+++ ...++|||||+|||+++.+.. ....+++.+ .++|+||||+
T Consensus         1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~~-~~~~i~~~~~~~~PvlGIC~   79 (184)
T cd01743           1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAG-ISLEIIRALAGKVPILGVCL   79 (184)
T ss_pred             CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccch-hHHHHHHHHhcCCCEEEECH
Confidence            68999974  788999999999999999998664432 225799999999999997654 344444445 7899999999


Q ss_pred             HHHHHHHHcC
Q 039151          270 GHQLLGQALG  279 (279)
Q Consensus       270 GhQLLa~AlG  279 (279)
                      |||+||.|+|
T Consensus        80 G~Qlla~~~G   89 (184)
T cd01743          80 GHQAIAEAFG   89 (184)
T ss_pred             hHHHHHHHhC
Confidence            9999999987

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=99.68  E-value=1.3e-16  Score=159.62  Aligned_cols=88  Identities=27%  Similarity=0.511  Sum_probs=73.1

Q ss_pred             cEEEEEEcC--chHHHHHHHHHCCCeEEEEcCCCC----hhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEe
Q 039151          192 YRVIAYDFG--IKHNILRRLASYGCQIIVVPSTWP----ASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVF  265 (279)
Q Consensus       192 ~~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~~~----~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PIL  265 (279)
                      +||++||++  +.+||.+.|++.|++++|++.+.+    .+++...+||+||||||||+|.+.....+.++.+..++|||
T Consensus         2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~~~~i~~~~~~~iPIL   81 (531)
T PRK09522          2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPII   81 (531)
T ss_pred             CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhCCCCHHHHHHHhcCCCEE
Confidence            489999996  489999999999999999986543    55665668999999999999987654444555444799999


Q ss_pred             eecHHHHHHHHHcC
Q 039151          266 GICMGHQLLGQALG  279 (279)
Q Consensus       266 GICLGhQLLa~AlG  279 (279)
                      |||+|||+|+.++|
T Consensus        82 GIClG~QlLa~a~G   95 (531)
T PRK09522         82 GICLGHQAIVEAYG   95 (531)
T ss_pred             EEcHHHHHHHHhcC
Confidence            99999999999997

>PRK13566 anthranilate synthase; Provisional

Probab=99.67  E-value=2.2e-16  Score=162.79  Aligned_cols=91  Identities=27%  Similarity=0.512  Sum_probs=79.6

Q ss_pred             CCCccEEEEEEcC--chHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCE
Q 039151          188 NSKTYRVIAYDFG--IKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPV  264 (279)
Q Consensus       188 ~~~~~~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PI  264 (279)
                      ++.+++|++||++  ..+++.++|+++|+++++++++.+.+.+...++|+||||||||+|.+. ...++|++++ .++||
T Consensus       523 ~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGpgsp~d~-~~~~lI~~a~~~~iPI  601 (720)
T PRK13566        523 VGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGPGRPSDF-DCKATIDAALARNLPI  601 (720)
T ss_pred             CCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCCCChhhC-CcHHHHHHHHHCCCcE
Confidence            4567899999998  689999999999999999998876555555689999999999999864 3678888888 69999


Q ss_pred             eeecHHHHHHHHHcC
Q 039151          265 FGICMGHQLLGQALG  279 (279)
Q Consensus       265 LGICLGhQLLa~AlG  279 (279)
                      ||||+|||+|+.|+|
T Consensus       602 LGIClG~QlLa~alG  616 (720)
T PRK13566        602 FGVCLGLQAIVEAFG  616 (720)
T ss_pred             EEEehhHHHHHHHcC
Confidence            999999999999997

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.67  E-value=2.8e-16  Score=139.29  Aligned_cols=88  Identities=39%  Similarity=0.575  Sum_probs=74.9

Q ss_pred             cEEEEEEcCc--hHHHHHHHHHCC-CeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHH-CCCC
Q 039151          192 YRVIAYDFGI--KHNILRRLASYG-CQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELL-GKVP  263 (279)
Q Consensus       192 ~~I~viD~G~--k~~I~r~L~~~G-~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~-~~~P  263 (279)
                      .+|+|+|||.  .+-|.|.+++.| ...+++|++.+.+++.+.+||||||||||.++++.    +...+.|+++. .++|
T Consensus         2 ~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~p   81 (198)
T COG0518           2 RKILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKP   81 (198)
T ss_pred             cEEEEEeCCCcHhHHHHHHHHHcCCceEEEEeCCCCcccccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCC
Confidence            3799999997  567899999999 77788899988888887889999999999887654    34566677776 5778


Q ss_pred             EeeecHHHHHHHHHcC
Q 039151          264 VFGICMGHQLLGQALG  279 (279)
Q Consensus       264 ILGICLGhQLLa~AlG  279 (279)
                      +||||+|||+||.+||
T Consensus        82 vLGIC~G~Ql~A~~lG   97 (198)
T COG0518          82 VLGICLGHQLLAKALG   97 (198)
T ss_pred             EEEEChhHHHHHHHhC
Confidence            9999999999999998

>PLN02347 GMP synthetase

Probab=99.67  E-value=3e-16  Score=157.13  Aligned_cols=87  Identities=32%  Similarity=0.503  Sum_probs=73.0

Q ss_pred             EEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC--hHHHH-HHHHHH-CCCCEee
Q 039151          193 RVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV--PYAVA-IVKELL-GKVPVFG  266 (279)
Q Consensus       193 ~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~--~~~i~-~Ir~~~-~~~PILG  266 (279)
                      +|++||||.  .++|.|.|+++|+.++++|++.+++++.+.++|||||||||+++.+.  +...+ .++.+. .++|+||
T Consensus        12 ~IlIID~G~~~t~~I~r~lrelgv~~~v~p~~~~~~~i~~~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPILG   91 (536)
T PLN02347         12 VVLILDYGSQYTHLITRRVRELGVYSLLLSGTASLDRIASLNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERGVPVLG   91 (536)
T ss_pred             EEEEEECCCcHHHHHHHHHHHCCCeEEEEECCCCHHHHhcCCCCEEEECCCCCcccccCCchhhHHHHHHHHhcCCcEEE
Confidence            799999997  47899999999999999999988888877789999999999998653  22222 333333 5899999


Q ss_pred             ecHHHHHHHHHcC
Q 039151          267 ICMGHQLLGQALG  279 (279)
Q Consensus       267 ICLGhQLLa~AlG  279 (279)
                      ||+|||+|+.++|
T Consensus        92 IClG~QlLa~alG  104 (536)
T PLN02347         92 ICYGMQLIVQKLG  104 (536)
T ss_pred             ECHHHHHHHHHcC
Confidence            9999999999997

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=99.67  E-value=2.6e-16  Score=135.47  Aligned_cols=85  Identities=36%  Similarity=0.627  Sum_probs=68.0

Q ss_pred             EEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHH
Q 039151          194 VIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMG  270 (279)
Q Consensus       194 I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLG  270 (279)
                      |++||+|.  ..++.++|+++|++++++|++.+.++....++|||||+|||+++.+.. .....+.++ .++|+||||+|
T Consensus         1 i~~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgvIl~Gg~~~~~~~~-~~~~~~~~~~~~~PilGIC~G   79 (181)
T cd01742           1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTPLEEIKLKNPKGIILSGGPSSVYEED-APRVDPEIFELGVPVLGICYG   79 (181)
T ss_pred             CEEEECCCchHHHHHHHHHhcCceEEEecCCCChhhhcccCCCEEEECCCcccccccc-cchhhHHHHhcCCCEEEEcHH
Confidence            57999986  477999999999999999988765543335899999999999886532 123344455 48999999999


Q ss_pred             HHHHHHHcC
Q 039151          271 HQLLGQALG  279 (279)
Q Consensus       271 hQLLa~AlG  279 (279)
                      ||+|+.|+|
T Consensus        80 ~Qll~~~~g   88 (181)
T cd01742          80 MQLIAKALG   88 (181)
T ss_pred             HHHHHHhcC
Confidence            999999987

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=99.65  E-value=5.3e-16  Score=159.79  Aligned_cols=90  Identities=26%  Similarity=0.492  Sum_probs=76.0

Q ss_pred             CCccEEEEEEcC--chHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEe
Q 039151          189 SKTYRVIAYDFG--IKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVF  265 (279)
Q Consensus       189 ~~~~~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PIL  265 (279)
                      +.+.+|++||+|  ..+++.++|+++|+++.+++++...+.+...++|+||||||||+|.+. ...+.|++++ .++|+|
T Consensus       514 ~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~~~~~~~~~~DgLILsgGPGsp~d~-~~~~~I~~~~~~~iPvL  592 (717)
T TIGR01815       514 GEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHAEAAFDERRPDLVVLSPGPGRPADF-DVAGTIDAALARGLPVF  592 (717)
T ss_pred             CCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCChhhhhhcCCCEEEEcCCCCCchhc-ccHHHHHHHHHCCCCEE
Confidence            456799999998  589999999999999999987654333334579999999999999864 4567888888 699999


Q ss_pred             eecHHHHHHHHHcC
Q 039151          266 GICMGHQLLGQALG  279 (279)
Q Consensus       266 GICLGhQLLa~AlG  279 (279)
                      |||||||+|+.++|
T Consensus       593 GICLG~QlLa~a~G  606 (717)
T TIGR01815       593 GVCLGLQGMVEAFG  606 (717)
T ss_pred             EECHHHHHHhhhhC
Confidence            99999999999997

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=99.65  E-value=3.7e-16  Score=156.58  Aligned_cols=87  Identities=33%  Similarity=0.623  Sum_probs=74.9

Q ss_pred             EEEEEEcC--chHHHHHHHHHCCCe-EEEE-cCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeec
Q 039151          193 RVIAYDFG--IKHNILRRLASYGCQ-IIVV-PSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGIC  268 (279)
Q Consensus       193 ~I~viD~G--~k~~I~r~L~~~G~~-v~vv-p~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGIC  268 (279)
                      +|++||+.  +++|+.+.|+++|++ +.++ |++.+.+++...+||+||||||||+|.+....++.++.+..++|+||||
T Consensus         1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~~~~~~li~~~~~~~PvLGIC   80 (534)
T PRK14607          1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAGISVEVIRHFSGKVPILGVC   80 (534)
T ss_pred             CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhCCccHHHHHHhhcCCCEEEEc
Confidence            48999984  589999999999996 7777 5556788887778999999999999988766777787755789999999


Q ss_pred             HHHHHHHHHcC
Q 039151          269 MGHQLLGQALG  279 (279)
Q Consensus       269 LGhQLLa~AlG  279 (279)
                      +|||+|+.++|
T Consensus        81 lG~QlLa~a~G   91 (534)
T PRK14607         81 LGHQAIGYAFG   91 (534)
T ss_pred             HHHHHHHHHcC
Confidence            99999999997

>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]

Probab=99.65  E-value=5.1e-16  Score=133.19  Aligned_cols=88  Identities=34%  Similarity=0.593  Sum_probs=80.7

Q ss_pred             cEEEEEEc--CchHHHHHHH-HHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeee
Q 039151          192 YRVIAYDF--GIKHNILRRL-ASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGI  267 (279)
Q Consensus       192 ~~I~viD~--G~k~~I~r~L-~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGI  267 (279)
                      .+|++||.  .+++|+.++| .+.||.+.|++++ .+.+++.+.+|++++||+|||+|.|.....+.|+++-.++|+|||
T Consensus        19 ~piv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~DsGIs~~~i~~f~~~iP~fGv   98 (223)
T KOG0026|consen   19 GPIIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQDSGISLQTVLELGPLVPLFGV   98 (223)
T ss_pred             CCEEEEecccchhHHHHHHhhhccCccEEEEecCcccHHHHhhcCCCeEEecCCCCCCccccchHHHHHHhCCCCceeee
Confidence            36999997  5799999999 6789999999987 588999999999999999999999888888999999899999999


Q ss_pred             cHHHHHHHHHcC
Q 039151          268 CMGHQLLGQALG  279 (279)
Q Consensus       268 CLGhQLLa~AlG  279 (279)
                      |+|.|.|..++|
T Consensus        99 CMGlQCi~e~fG  110 (223)
T KOG0026|consen   99 CMGLQCIGEAFG  110 (223)
T ss_pred             ehhhhhhhhhhC
Confidence            999999999987

>PRK00758 GMP synthase subunit A; Validated

Probab=99.61  E-value=2.8e-15  Score=130.14  Aligned_cols=82  Identities=37%  Similarity=0.645  Sum_probs=64.4

Q ss_pred             EEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCC-CeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecH
Q 039151          193 RVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKP-DGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICM  269 (279)
Q Consensus       193 ~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~-DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICL  269 (279)
                      +|++||+|.  .+++.+.|+++|+++.+++++.+.+++.  ++ ||||||||| ++.......+.+++  .++|+||||+
T Consensus         1 ~i~iid~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~l~--~~~dgivi~Gg~-~~~~~~~~~~~l~~--~~~PilGIC~   75 (184)
T PRK00758          1 KIVVVDNGGQYNHLIHRTLRYLGVDAKIIPNTTPVEEIK--AFEDGLILSGGP-DIERAGNCPEYLKE--LDVPILGICL   75 (184)
T ss_pred             CEEEEECCCchHHHHHHHHHHcCCcEEEEECCCCHHHHh--hcCCEEEECCCC-ChhhccccHHHHHh--CCCCEEEEeH
Confidence            489999976  5789999999999999999887777764  45 999999999 44322222233331  4899999999


Q ss_pred             HHHHHHHHcC
Q 039151          270 GHQLLGQALG  279 (279)
Q Consensus       270 GhQLLa~AlG  279 (279)
                      |||+|+.|+|
T Consensus        76 G~Q~L~~a~G   85 (184)
T PRK00758         76 GHQLIAKAFG   85 (184)
T ss_pred             HHHHHHHhcC
Confidence            9999999987

>PRK00074 guaA GMP synthase; Reviewed

Probab=99.59  E-value=3.9e-15  Score=148.51  Aligned_cols=87  Identities=33%  Similarity=0.565  Sum_probs=72.5

Q ss_pred             cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151          192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC  268 (279)
Q Consensus       192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC  268 (279)
                      .+|+|||||.  .++|.|.|+++|+.++++|++.+.+++.+.+||||||||||.++.+.. .....+.++ .++|+||||
T Consensus         4 ~~i~vlD~Gsq~~~li~r~lrelg~~~~v~p~~~~~~~l~~~~~dgIIlsGGp~sv~~~~-~p~~~~~i~~~~~PvLGIC   82 (511)
T PRK00074          4 DKILILDFGSQYTQLIARRVRELGVYSEIVPYDISAEEIRAFNPKGIILSGGPASVYEEG-APRADPEIFELGVPVLGIC   82 (511)
T ss_pred             CEEEEEECCCCcHHHHHHHHHHCCCeEEEEECCCCHHHHhccCCCEEEECCCCcccccCC-CccccHHHHhCCCCEEEEC
Confidence            3799999997  567999999999999999998888888777889999999999876532 112234445 599999999


Q ss_pred             HHHHHHHHHcC
Q 039151          269 MGHQLLGQALG  279 (279)
Q Consensus       269 LGhQLLa~AlG  279 (279)
                      +|||+|+.++|
T Consensus        83 ~G~QlLa~~lG   93 (511)
T PRK00074         83 YGMQLMAHQLG   93 (511)
T ss_pred             HHHHHHHHHhC
Confidence            99999999997

>PLN02889 oxo-acid-lyase/anthranilate synthase

Probab=99.59  E-value=3.9e-15  Score=155.89  Aligned_cols=87  Identities=30%  Similarity=0.577  Sum_probs=71.3

Q ss_pred             cEEEEEEc--CchHHHHHHHHHC-CCeEEEEcCC-CChhhhhc-----cCCCeEEEcCCCCCCCCChH---HHHHHHHHH
Q 039151          192 YRVIAYDF--GIKHNILRRLASY-GCQIIVVPST-WPASETLK-----LKPDGVLFSNGPGDPSAVPY---AVAIVKELL  259 (279)
Q Consensus       192 ~~I~viD~--G~k~~I~r~L~~~-G~~v~vvp~~-~~~~~i~~-----~~~DgIiLSgGPGdp~~~~~---~i~~Ir~~~  259 (279)
                      +||++||+  .+++||++.|.+. |+++.|++++ .+.+++..     ..||+||||||||+|.....   ..+.|+++ 
T Consensus        82 ~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~-  160 (918)
T PLN02889         82 VRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGICLRLLLEC-  160 (918)
T ss_pred             ceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHHHHHHHHHHh-
Confidence            79999998  5799999999998 9999999887 46666642     47999999999999975332   34444443 


Q ss_pred             CCCCEeeecHHHHHHHHHcC
Q 039151          260 GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       260 ~~~PILGICLGhQLLa~AlG  279 (279)
                      .++||||||||||+|++++|
T Consensus       161 ~~iPILGICLGhQ~i~~~~G  180 (918)
T PLN02889        161 RDIPILGVCLGHQALGYVHG  180 (918)
T ss_pred             CCCcEEEEcHHHHHHHHhcC
Confidence            57999999999999999997

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=99.56  E-value=1.3e-14  Score=150.23  Aligned_cols=88  Identities=31%  Similarity=0.466  Sum_probs=69.1

Q ss_pred             ccEEEEEEcC--chHHHHHHHHHC---CCeEEEEcCCCChhhhh--ccCCCeEEEcCCCCCCCCChHHHHHHHHHH--C-
Q 039151          191 TYRVIAYDFG--IKHNILRRLASY---GCQIIVVPSTWPASETL--KLKPDGVLFSNGPGDPSAVPYAVAIVKELL--G-  260 (279)
Q Consensus       191 ~~~I~viD~G--~k~~I~r~L~~~---G~~v~vvp~~~~~~~i~--~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--~-  260 (279)
                      .+||++||++  +++||++.|++.   ++++++++++....++.  ..++|+||||||||+|.+. ..+..+++++  . 
T Consensus         5 ~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~-~~~~i~~~i~~~~~   83 (742)
T TIGR01823         5 RLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNA-QDMGIISELWELAN   83 (742)
T ss_pred             CceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccch-hhhHHHHHHHHhcc
Confidence            5799999998  799999999886   36788888875433332  1479999999999999743 3344555555  2 


Q ss_pred             --CCCEeeecHHHHHHHHHcC
Q 039151          261 --KVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       261 --~~PILGICLGhQLLa~AlG  279 (279)
                        ++|+||||||||+|+.++|
T Consensus        84 ~~~iPvLGIClG~QlLa~a~G  104 (742)
T TIGR01823        84 LDEVPVLGICLGFQSLCLAQG  104 (742)
T ss_pred             cCCCcEEEEchhhHHHHhhcC
Confidence              5999999999999999997

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>PRK06490 glutamine amidotransferase; Provisional

Probab=99.51  E-value=9.1e-14  Score=126.29  Aligned_cols=87  Identities=18%  Similarity=0.283  Sum_probs=68.7

Q ss_pred             ccEEEEEEc---CchHHHHHHHHHCCCeEEEEcCCCC---hhhhhccCCCeEEEcCCCCCCCCCh----HHHHHHHHHH-
Q 039151          191 TYRVIAYDF---GIKHNILRRLASYGCQIIVVPSTWP---ASETLKLKPDGVLFSNGPGDPSAVP----YAVAIVKELL-  259 (279)
Q Consensus       191 ~~~I~viD~---G~k~~I~r~L~~~G~~v~vvp~~~~---~~~i~~~~~DgIiLSgGPGdp~~~~----~~i~~Ir~~~-  259 (279)
                      .+||++|..   +...++.+.|+++|.++.++.....   ++++  .++|++||+|||+++.+..    .++++|++++ 
T Consensus         7 ~~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~~l--~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~   84 (239)
T PRK06490          7 KRPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPDTL--EDHAGAVIFGGPMSANDPDDFIRREIDWISVPLK   84 (239)
T ss_pred             CceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCCcc--cccCEEEEECCCCCCCCCchHHHHHHHHHHHHHH
Confidence            478888843   4578899999999999998854311   2233  4799999999999987653    3456777777 


Q ss_pred             CCCCEeeecHHHHHHHHHcC
Q 039151          260 GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       260 ~~~PILGICLGhQLLa~AlG  279 (279)
                      .++|+||||+|||+||.|+|
T Consensus        85 ~~~PvLGIC~G~Qlla~alG  104 (239)
T PRK06490         85 ENKPFLGICLGAQMLARHLG  104 (239)
T ss_pred             CCCCEEEECHhHHHHHHHcC
Confidence            68999999999999999997

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.48  E-value=1.1e-13  Score=121.89  Aligned_cols=81  Identities=25%  Similarity=0.428  Sum_probs=62.6

Q ss_pred             cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHH---HHHHHHH-CCCCEe
Q 039151          192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAV---AIVKELL-GKVPVF  265 (279)
Q Consensus       192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i---~~Ir~~~-~~~PIL  265 (279)
                      |+|++||||.  .+|+.++|++.|+++.++..   .+++.  ++|+||| +|||.|.+....+   .+++.+. .++|+|
T Consensus         1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~---~~~~~--~~d~iIl-PG~G~~~~~~~~l~~~~l~~~i~~~~~Pil   74 (196)
T PRK13170          1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRD---PDVIL--AADKLFL-PGVGTAQAAMDQLRERELIDLIKACTQPVL   74 (196)
T ss_pred             CeEEEEeCCCchHHHHHHHHHHCCCeEEEECC---HHHhC--CCCEEEE-CCCCchHHHHHHHHHcChHHHHHHcCCCEE
Confidence            5799999976  68999999999999999863   34553  6899998 8999887542221   2233333 489999


Q ss_pred             eecHHHHHHHHHc
Q 039151          266 GICMGHQLLGQAL  278 (279)
Q Consensus       266 GICLGhQLLa~Al  278 (279)
                      |||+|||+|+.++
T Consensus        75 GIClG~Qll~~~~   87 (196)
T PRK13170         75 GICLGMQLLGERS   87 (196)
T ss_pred             EECHHHHHHhhhc
Confidence            9999999999986

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=99.45  E-value=2.8e-13  Score=118.58  Aligned_cols=79  Identities=24%  Similarity=0.432  Sum_probs=62.8

Q ss_pred             chHHHHHHHHHCCCeEEEEcCCCChhhhhc--cCCCeEEEcCCCCCCCC-----------------ChHHHHHHHHHH-C
Q 039151          201 IKHNILRRLASYGCQIIVVPSTWPASETLK--LKPDGVLFSNGPGDPSA-----------------VPYAVAIVKELL-G  260 (279)
Q Consensus       201 ~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~--~~~DgIiLSgGPGdp~~-----------------~~~~i~~Ir~~~-~  260 (279)
                      +.++++++|+..|+.+.++|+..+.+++..  .++|||||+|||+...+                 ...+.+.+++++ .
T Consensus        20 ~~~~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~   99 (189)
T cd01745          20 LNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALER   99 (189)
T ss_pred             HHHHHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHC
Confidence            467899999999999999998766544322  47999999999964211                 123467888888 6


Q ss_pred             CCCEeeecHHHHHHHHHcC
Q 039151          261 KVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       261 ~~PILGICLGhQLLa~AlG  279 (279)
                      ++|+||||+|||+|+.++|
T Consensus       100 ~~PilgiC~G~Q~l~~~~G  118 (189)
T cd01745         100 GKPILGICRGMQLLNVALG  118 (189)
T ss_pred             CCCEEEEcchHHHHHHHhC
Confidence            8999999999999999997

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>PRK07053 glutamine amidotransferase; Provisional

Probab=99.45  E-value=5.6e-13  Score=120.79  Aligned_cols=88  Identities=24%  Similarity=0.351  Sum_probs=68.0

Q ss_pred             cEEEEEEcCc---hHHHHHHHHHCCCeEEEEcCCCC-hhhhhccCCCeEEEcCCCCCCCCC------hHHHHHHHHHH-C
Q 039151          192 YRVIAYDFGI---KHNILRRLASYGCQIIVVPSTWP-ASETLKLKPDGVLFSNGPGDPSAV------PYAVAIVKELL-G  260 (279)
Q Consensus       192 ~~I~viD~G~---k~~I~r~L~~~G~~v~vvp~~~~-~~~i~~~~~DgIiLSgGPGdp~~~------~~~i~~Ir~~~-~  260 (279)
                      ++|+||..--   ..++.++|+++|.++++++.+.. .......++|+|||+|||.++.+.      ..++++|++++ .
T Consensus         3 ~~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~   82 (234)
T PRK07053          3 KTAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAA   82 (234)
T ss_pred             ceEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHC
Confidence            4788887632   46788999999999999876432 111112479999999999887652      34678888888 6


Q ss_pred             CCCEeeecHHHHHHHHHcC
Q 039151          261 KVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       261 ~~PILGICLGhQLLa~AlG  279 (279)
                      ++|+||||+|||+|+.|+|
T Consensus        83 ~~PvlGIC~G~Qlla~alG  101 (234)
T PRK07053         83 GLPTLGICLGAQLIARALG  101 (234)
T ss_pred             CCCEEEECccHHHHHHHcC
Confidence            9999999999999999997

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.44  E-value=3.8e-13  Score=118.73  Aligned_cols=78  Identities=23%  Similarity=0.426  Sum_probs=61.8

Q ss_pred             EEEEEcCch--HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChH------HHHHHHHH-H-CCCC
Q 039151          194 VIAYDFGIK--HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPY------AVAIVKEL-L-GKVP  263 (279)
Q Consensus       194 I~viD~G~k--~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~------~i~~Ir~~-~-~~~P  263 (279)
                      |++||||++  +++.+.|++.|+++.+++.   .+++  .++|+||| +|||++.+...      ..+.+++. + .++|
T Consensus         2 i~iid~g~~n~~~v~~~l~~~g~~~~~~~~---~~~l--~~~d~lil-PG~g~~~~~~~~l~~~~~~~~l~~~~~~~~~p   75 (201)
T PRK13152          2 IALIDYKAGNLNSVAKAFEKIGAINFIAKN---PKDL--QKADKLLL-PGVGSFKEAMKNLKELGFIEALKEQVLVQKKP   75 (201)
T ss_pred             EEEEECCCCcHHHHHHHHHHCCCeEEEECC---HHHH--cCCCEEEE-CCCCchHHHHHHHHHcCcHHHHHHHHHhCCCc
Confidence            899999997  9999999999999888764   3455  36999999 89999865321      23445544 4 5899


Q ss_pred             EeeecHHHHHHHHH
Q 039151          264 VFGICMGHQLLGQA  277 (279)
Q Consensus       264 ILGICLGhQLLa~A  277 (279)
                      +||||+|||+|+.+
T Consensus        76 vlGiC~G~Q~l~~~   89 (201)
T PRK13152         76 ILGICLGMQLFLER   89 (201)
T ss_pred             EEEECHhHHHHhhc
Confidence            99999999999986

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=99.38  E-value=9.6e-13  Score=115.47  Aligned_cols=78  Identities=26%  Similarity=0.518  Sum_probs=62.8

Q ss_pred             EEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC------hHHHHHHHHHH-CCCCE
Q 039151          194 VIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV------PYAVAIVKELL-GKVPV  264 (279)
Q Consensus       194 I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~------~~~i~~Ir~~~-~~~PI  264 (279)
                      |+|||||+  .+++.+.|+++|+++++++..   +++  .++|+||| +||+++.+.      ....+.++++. .++|+
T Consensus         1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~---~~l--~~~d~iii-pG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pi   74 (198)
T cd01748           1 IAIIDYGMGNLRSVANALERLGAEVIITSDP---EEI--LSADKLIL-PGVGAFGDAMANLRERGLIEALKEAIASGKPF   74 (198)
T ss_pred             CEEEeCCCChHHHHHHHHHHCCCeEEEEcCh---HHh--ccCCEEEE-CCCCcHHHHHHHHHHcChHHHHHHHHHCCCcE
Confidence            68999987  788999999999999999742   344  36899999 567766432      13467888887 69999


Q ss_pred             eeecHHHHHHHHH
Q 039151          265 FGICMGHQLLGQA  277 (279)
Q Consensus       265 LGICLGhQLLa~A  277 (279)
                      ||||+|||+|+.+
T Consensus        75 lGiC~G~q~l~~~   87 (198)
T cd01748          75 LGICLGMQLLFES   87 (198)
T ss_pred             EEECHHHHHhccc
Confidence            9999999999987

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=99.38  E-value=1.3e-12  Score=115.39  Aligned_cols=79  Identities=29%  Similarity=0.492  Sum_probs=64.3

Q ss_pred             cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh------HHHHHHHHHH-CCC
Q 039151          192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP------YAVAIVKELL-GKV  262 (279)
Q Consensus       192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~------~~i~~Ir~~~-~~~  262 (279)
                      ++|+|||+|+  .+|+.++|++.|+++.+..   +++++.  +.|+||| +|.|...++.      ..++.|++.+ .++
T Consensus         2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~---d~~~i~--~AD~liL-PGVGaf~~am~~L~~~gl~~~i~~~~~~~k   75 (204)
T COG0118           2 MMVAIIDYGSGNLRSVKKALERLGAEVVVSR---DPEEIL--KADKLIL-PGVGAFGAAMANLRERGLIEAIKEAVESGK   75 (204)
T ss_pred             CEEEEEEcCcchHHHHHHHHHHcCCeeEEec---CHHHHh--hCCEEEe-cCCCCHHHHHHHHHhcchHHHHHHHHhcCC
Confidence            5899999987  6899999999999998864   456664  7899999 7888765432      3567788777 579


Q ss_pred             CEeeecHHHHHHHH
Q 039151          263 PVFGICMGHQLLGQ  276 (279)
Q Consensus       263 PILGICLGhQLLa~  276 (279)
                      |+||||+|||||..
T Consensus        76 P~LGIClGMQlLfe   89 (204)
T COG0118          76 PFLGICLGMQLLFE   89 (204)
T ss_pred             CEEEEeHhHHhhhh
Confidence            99999999999975

>PRK05665 amidotransferase; Provisional

Probab=99.36  E-value=3.5e-12  Score=116.11  Aligned_cols=86  Identities=20%  Similarity=0.272  Sum_probs=58.3

Q ss_pred             cEEEEEEcCc-----------hHH-HHHHHHHCCCe--EEEEcCCC-C-hhhhhccCCCeEEEcCCCCCCCCChH----H
Q 039151          192 YRVIAYDFGI-----------KHN-ILRRLASYGCQ--IIVVPSTW-P-ASETLKLKPDGVLFSNGPGDPSAVPY----A  251 (279)
Q Consensus       192 ~~I~viD~G~-----------k~~-I~r~L~~~G~~--v~vvp~~~-~-~~~i~~~~~DgIiLSgGPGdp~~~~~----~  251 (279)
                      +||+|+.+|.           ... +.+.|.+.+.+  +.++.... . +.+  ..++||+||+|||.++.+...    +
T Consensus         3 mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~~--~~~~dgiiitGs~~~v~~~~pwi~~l   80 (240)
T PRK05665          3 LRICILETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPAD--DEKFDAYLVTGSKADSFGTDPWIQTL   80 (240)
T ss_pred             eEEEEEECCCCCHHHHHHhCCHHHHHHHHHHhCCCCceEEEEeccCCCCCCC--cccCCEEEECCCCCCccccchHHHHH
Confidence            4677776653           122 44555666644  44443211 1 112  247999999999999876533    4


Q ss_pred             HHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151          252 VAIVKELL-GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       252 i~~Ir~~~-~~~PILGICLGhQLLa~AlG  279 (279)
                      .+.|++++ .++|+||||+|||+||.|+|
T Consensus        81 ~~~i~~~~~~~~PilGIC~GhQlla~AlG  109 (240)
T PRK05665         81 KTYLLKLYERGDKLLGVCFGHQLLALLLG  109 (240)
T ss_pred             HHHHHHHHhcCCCEEEEeHHHHHHHHHhC
Confidence            56677777 68999999999999999998

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=99.36  E-value=2.4e-12  Score=114.94  Aligned_cols=81  Identities=22%  Similarity=0.376  Sum_probs=63.5

Q ss_pred             cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh------HHHHHHHHHH-CCC
Q 039151          192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP------YAVAIVKELL-GKV  262 (279)
Q Consensus       192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~------~~i~~Ir~~~-~~~  262 (279)
                      ++|.|||+|.  -.++.++|+++|+++.+++.   .+++.  ++|+||+ +|||+|....      ...+.|++++ .++
T Consensus         2 ~~v~iid~~~GN~~sl~~al~~~g~~v~vv~~---~~~l~--~~d~iIl-PG~g~~~~~~~~l~~~gl~~~i~~~~~~~~   75 (210)
T CHL00188          2 MKIGIIDYSMGNLHSVSRAIQQAGQQPCIINS---ESELA--QVHALVL-PGVGSFDLAMKKLEKKGLITPIKKWIAEGN   75 (210)
T ss_pred             cEEEEEEcCCccHHHHHHHHHHcCCcEEEEcC---HHHhh--hCCEEEE-CCCCchHHHHHHHHHCCHHHHHHHHHHcCC
Confidence            5799999975  58899999999999999864   24442  6899885 8999875321      2345677777 689


Q ss_pred             CEeeecHHHHHHHHHc
Q 039151          263 PVFGICMGHQLLGQAL  278 (279)
Q Consensus       263 PILGICLGhQLLa~Al  278 (279)
                      |+||||+|||+|+...
T Consensus        76 pvlGIClG~Qll~~~~   91 (210)
T CHL00188         76 PFIGICLGLHLLFETS   91 (210)
T ss_pred             CEEEECHHHHHHhhcc
Confidence            9999999999999764

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.35  E-value=2.5e-12  Score=113.10  Aligned_cols=78  Identities=28%  Similarity=0.452  Sum_probs=61.5

Q ss_pred             EEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC------hHHHHHHHHHH-CCCCE
Q 039151          194 VIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV------PYAVAIVKELL-GKVPV  264 (279)
Q Consensus       194 I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~------~~~i~~Ir~~~-~~~PI  264 (279)
                      |++||||.  ..++.++|+++|++++++.   +.+++  .++|+||+ +|+|++...      ....+.++++. .++|+
T Consensus         2 i~vid~g~gn~~~~~~~l~~~g~~v~~~~---~~~~l--~~~d~lil-pG~g~~~~~~~~l~~~~~~~~i~~~~~~~~Pv   75 (199)
T PRK13181          2 IAIIDYGAGNLRSVANALKRLGVEAVVSS---DPEEI--AGADKVIL-PGVGAFGQAMRSLRESGLDEALKEHVEKKQPV   75 (199)
T ss_pred             EEEEeCCCChHHHHHHHHHHCCCcEEEEc---ChHHh--ccCCEEEE-CCCCCHHHHHHHHHHCChHHHHHHHHHCCCCE
Confidence            89999987  6889999999999999884   24555  36999987 667776421      12356677777 68999


Q ss_pred             eeecHHHHHHHHH
Q 039151          265 FGICMGHQLLGQA  277 (279)
Q Consensus       265 LGICLGhQLLa~A  277 (279)
                      ||||+|||+|+.+
T Consensus        76 lGiC~G~Qll~~~   88 (199)
T PRK13181         76 LGICLGMQLLFES   88 (199)
T ss_pred             EEECHhHHHhhhh
Confidence            9999999999998

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=99.33  E-value=8.3e-12  Score=108.23  Aligned_cols=87  Identities=28%  Similarity=0.354  Sum_probs=64.7

Q ss_pred             EEEEEEcCc---hHHHHHHHHHCC---CeEEEEcCCCChhhhhccCCCeEEEcCCCCCC-CCC----hHHHHHHHHHH-C
Q 039151          193 RVIAYDFGI---KHNILRRLASYG---CQIIVVPSTWPASETLKLKPDGVLFSNGPGDP-SAV----PYAVAIVKELL-G  260 (279)
Q Consensus       193 ~I~viD~G~---k~~I~r~L~~~G---~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp-~~~----~~~i~~Ir~~~-~  260 (279)
                      ||+++....   ..++.++|+++|   .++.+++...........++|||||+|||.++ .+.    ....+.+++++ .
T Consensus         1 ~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~   80 (188)
T cd01741           1 RILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGELLPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAA   80 (188)
T ss_pred             CEEEEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCCCCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHC
Confidence            466666644   357888899988   68888876543211112479999999999988 322    34667788877 6


Q ss_pred             CCCEeeecHHHHHHHHHcC
Q 039151          261 KVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       261 ~~PILGICLGhQLLa~AlG  279 (279)
                      ++|+||||+|||+|+.++|
T Consensus        81 ~~pilgiC~G~q~l~~~lG   99 (188)
T cd01741          81 GKPVLGICLGHQLLARALG   99 (188)
T ss_pred             CCCEEEECccHHHHHHHhC
Confidence            8999999999999999987

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.32  E-value=4.7e-12  Score=111.77  Aligned_cols=79  Identities=27%  Similarity=0.535  Sum_probs=61.9

Q ss_pred             EEEEEEcCch--HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC------hHHHHHHHHHH-CCCC
Q 039151          193 RVIAYDFGIK--HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV------PYAVAIVKELL-GKVP  263 (279)
Q Consensus       193 ~I~viD~G~k--~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~------~~~i~~Ir~~~-~~~P  263 (279)
                      +|+++|||..  .++.|.|+++|+++.++..   .+++  .++|+|||+ |++.+.+.      ....+.|++++ .++|
T Consensus         1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~---~~~l--~~~d~iiip-G~~~~~~~~~~~~~~~~~~~i~~~~~~~~p   74 (205)
T PRK13141          1 MIAIIDYGMGNLRSVEKALERLGAEAVITSD---PEEI--LAADGVILP-GVGAFPDAMANLRERGLDEVIKEAVASGKP   74 (205)
T ss_pred             CEEEEEcCCchHHHHHHHHHHCCCeEEEECC---HHHh--ccCCEEEEC-CCCchHHHHHHHHHcChHHHHHHHHHCCCc
Confidence            4899999985  7899999999999999863   3454  379999995 44544321      13467788877 6899


Q ss_pred             EeeecHHHHHHHHH
Q 039151          264 VFGICMGHQLLGQA  277 (279)
Q Consensus       264 ILGICLGhQLLa~A  277 (279)
                      +||||+|||+|+.+
T Consensus        75 vlGIC~G~Qll~~~   88 (205)
T PRK13141         75 LLGICLGMQLLFES   88 (205)
T ss_pred             EEEECHHHHHhhhc
Confidence            99999999999986

>PRK09065 glutamine amidotransferase; Provisional

Probab=99.32  E-value=4.3e-12  Score=115.04  Aligned_cols=74  Identities=24%  Similarity=0.300  Sum_probs=56.1

Q ss_pred             HHHHHHHHCCCeEEEEcCCCC--hhhhhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHH-CCCCEeeecHHHHHHHH
Q 039151          204 NILRRLASYGCQIIVVPSTWP--ASETLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELL-GKVPVFGICMGHQLLGQ  276 (279)
Q Consensus       204 ~I~r~L~~~G~~v~vvp~~~~--~~~i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~-~~~PILGICLGhQLLa~  276 (279)
                      .+.+.|...|.++.++.....  ..++  .++|||||+|||.+..+.    ....++|++++ .++|+||||+|||+|+.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~  103 (237)
T PRK09065         26 WIRVALGLAEQPVVVVRVFAGEPLPAP--DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAH  103 (237)
T ss_pred             HHHHHhccCCceEEEEeccCCCCCCCh--hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHH
Confidence            344556677898888765431  2233  479999999999987653    23467788877 69999999999999999


Q ss_pred             HcC
Q 039151          277 ALG  279 (279)
Q Consensus       277 AlG  279 (279)
                      |+|
T Consensus       104 alG  106 (237)
T PRK09065        104 ALG  106 (237)
T ss_pred             HcC
Confidence            998

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.32  E-value=8.2e-12  Score=110.21  Aligned_cols=80  Identities=24%  Similarity=0.506  Sum_probs=62.1

Q ss_pred             cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHH-CCCCE
Q 039151          192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELL-GKVPV  264 (279)
Q Consensus       192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~-~~~PI  264 (279)
                      +||+|||+|.  ..++.++|+++|+++.+++.   .+++  .++|+|+|+| ++++.+.    ....+.+++++ .++|+
T Consensus         1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~---~~~~--~~~d~iii~G-~~~~~~~~~~~~~~~~~i~~~~~~~~Pi   74 (200)
T PRK13143          1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSD---PEEI--LDADGIVLPG-VGAFGAAMENLSPLRDVILEAARSGKPF   74 (200)
T ss_pred             CeEEEEECCCccHHHHHHHHHHCCCeEEEECC---HHHH--ccCCEEEECC-CCCHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence            5899999976  46899999999999999863   3344  3799999965 4444321    23566778777 68999


Q ss_pred             eeecHHHHHHHHH
Q 039151          265 FGICMGHQLLGQA  277 (279)
Q Consensus       265 LGICLGhQLLa~A  277 (279)
                      ||||+|||+|+.+
T Consensus        75 lgIC~G~q~l~~~   87 (200)
T PRK13143         75 LGICLGMQLLFES   87 (200)
T ss_pred             EEECHHHHHHhhh
Confidence            9999999999985

>PRK08250 glutamine amidotransferase; Provisional

Probab=99.31  E-value=1.2e-11  Score=112.05  Aligned_cols=87  Identities=22%  Similarity=0.299  Sum_probs=63.5

Q ss_pred             cEEEEEEc-C--chHHHHHHHHHCCCeEEEEcCCCChhhhh--ccCCCeEEEcCCCCCCCCC---------hHHHHHHHH
Q 039151          192 YRVIAYDF-G--IKHNILRRLASYGCQIIVVPSTWPASETL--KLKPDGVLFSNGPGDPSAV---------PYAVAIVKE  257 (279)
Q Consensus       192 ~~I~viD~-G--~k~~I~r~L~~~G~~v~vvp~~~~~~~i~--~~~~DgIiLSgGPGdp~~~---------~~~i~~Ir~  257 (279)
                      |||++|-. .  -...+...++++|.++.++..... +.+.  ..++|+|||+|||+++.+.         ..+.+.|++
T Consensus         1 m~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g-~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~   79 (235)
T PRK08250          1 MRVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAG-EALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQ   79 (235)
T ss_pred             CeEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCC-CCCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHHH
Confidence            46666653 2  245567788889999988754321 1121  2479999999999986531         245678888


Q ss_pred             HH-CCCCEeeecHHHHHHHHHcC
Q 039151          258 LL-GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       258 ~~-~~~PILGICLGhQLLa~AlG  279 (279)
                      ++ .++|+||||+|||+|+.|+|
T Consensus        80 ~~~~~~PvlGIC~G~Qlla~alG  102 (235)
T PRK08250         80 AIKAGKAVIGVCLGAQLIGEALG  102 (235)
T ss_pred             HHHcCCCEEEEChhHHHHHHHhC
Confidence            88 69999999999999999997

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.30  E-value=6.4e-12  Score=110.99  Aligned_cols=77  Identities=21%  Similarity=0.419  Sum_probs=59.9

Q ss_pred             EEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChH------HHHHHHHHHCCCCEe
Q 039151          194 VIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPY------AVAIVKELLGKVPVF  265 (279)
Q Consensus       194 I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~------~i~~Ir~~~~~~PIL  265 (279)
                      |+|||||.  -+|+.++|++.|+++.++..   .+++.  ++|+||| +|+|++.+...      ..+.|++ ..++|+|
T Consensus         2 i~iidyg~gN~~s~~~al~~~g~~~~~v~~---~~~l~--~~D~lIl-PG~g~~~~~~~~L~~~gl~~~i~~-~~g~Pvl   74 (192)
T PRK13142          2 IVIVDYGLGNISNVKRAIEHLGYEVVVSNT---SKIID--QAETIIL-PGVGHFKDAMSEIKRLNLNAILAK-NTDKKMI   74 (192)
T ss_pred             EEEEEcCCccHHHHHHHHHHcCCCEEEEeC---HHHhc--cCCEEEE-CCCCCHHHHHHHHHHCCcHHHHHH-hCCCeEE
Confidence            88999987  68999999999999998853   45663  6999966 78888764321      2444555 3589999


Q ss_pred             eecHHHHHHHHH
Q 039151          266 GICMGHQLLGQA  277 (279)
Q Consensus       266 GICLGhQLLa~A  277 (279)
                      |||+|||||+..
T Consensus        75 GIClGmQlL~~~   86 (192)
T PRK13142         75 GICLGMQLMYEH   86 (192)
T ss_pred             EECHHHHHHhhh
Confidence            999999999875

>PRK07567 glutamine amidotransferase; Provisional

Probab=99.28  E-value=1.7e-11  Score=111.62  Aligned_cols=84  Identities=18%  Similarity=0.279  Sum_probs=55.8

Q ss_pred             EEEEEcCc-----hHHHHHHHHHCCCe---EEEEcCCCC---hhhhhccCCCeEEEcCCCCCCCCC-----hH---H---
Q 039151          194 VIAYDFGI-----KHNILRRLASYGCQ---IIVVPSTWP---ASETLKLKPDGVLFSNGPGDPSAV-----PY---A---  251 (279)
Q Consensus       194 I~viD~G~-----k~~I~r~L~~~G~~---v~vvp~~~~---~~~i~~~~~DgIiLSgGPGdp~~~-----~~---~---  251 (279)
                      |+++..+.     ...+.+.|++.|..   +.++..+..   ..++  .++|||||+|||+++.+.     ++   .   
T Consensus         4 ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~   81 (242)
T PRK07567          4 FLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDREPLPDLDL--DDYSGVIVGGSPFNVSDPAESKSPWQRRVEAE   81 (242)
T ss_pred             EEEEecCCCcccccchHHHHHHhcCCCccceEEEecccCCCCCCCH--hhccEEEEcCCCCcCCCCCCccchHHHHHHHH
Confidence            55555432     24566777777754   666543321   1122  479999999999998764     21   1   


Q ss_pred             -HHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151          252 -VAIVKELL-GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       252 -i~~Ir~~~-~~~PILGICLGhQLLa~AlG  279 (279)
                       .+.++.++ .++|+||||+|||+||.|+|
T Consensus        82 i~~~i~~~~~~~~PvLGIC~G~Qlla~a~G  111 (242)
T PRK07567         82 LSGLLDEVVARDFPFLGACYGVGTLGHHQG  111 (242)
T ss_pred             HHHHHHHHHhcCCCEEEEchhHHHHHHHcC
Confidence             23344444 68999999999999999997

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.26  E-value=1.6e-11  Score=109.65  Aligned_cols=79  Identities=19%  Similarity=0.421  Sum_probs=61.9

Q ss_pred             EEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh------HHHHHHHHHH-CCCCE
Q 039151          194 VIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP------YAVAIVKELL-GKVPV  264 (279)
Q Consensus       194 I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~------~~i~~Ir~~~-~~~PI  264 (279)
                      |+|||||+  -+|+.++|+..++++..+.   +.+++.  ++|+||+ +|+|++...-      ...+.|++++ .++|+
T Consensus         2 i~iidyg~gNl~s~~~al~~~~~~~~~~~---~~~~l~--~~d~iIl-PG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pi   75 (210)
T PRK14004          2 IAILDYGMGNIHSCLKAVSLYTKDFVFTS---DPETIE--NSKALIL-PGDGHFDKAMENLNSTGLRSTIDKHVESGKPL   75 (210)
T ss_pred             EEEEECCCchHHHHHHHHHHcCCeEEEEC---CHHHhc--cCCEEEE-CCCCchHHHHHHHHHcCcHHHHHHHHHcCCCE
Confidence            89999987  6889999999999888763   345553  7899885 7888765421      3455667666 79999


Q ss_pred             eeecHHHHHHHHHc
Q 039151          265 FGICMGHQLLGQAL  278 (279)
Q Consensus       265 LGICLGhQLLa~Al  278 (279)
                      ||||+|||+|+.++
T Consensus        76 lGiC~G~Q~l~~~~   89 (210)
T PRK14004         76 FGICIGFQILFESS   89 (210)
T ss_pred             EEECHhHHHHHHhc
Confidence            99999999999875

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=99.26  E-value=1.6e-11  Score=108.04  Aligned_cols=78  Identities=27%  Similarity=0.468  Sum_probs=59.4

Q ss_pred             EEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh----HH-HHHH-HHHH-CCCCE
Q 039151          194 VIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP----YA-VAIV-KELL-GKVPV  264 (279)
Q Consensus       194 I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~----~~-i~~I-r~~~-~~~PI  264 (279)
                      |+|+|+|.  ...+.+.|+++|+++++++.+   +++  .++|+||| +||+++.+..    .. .+.+ ++++ .++|+
T Consensus         1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~---~~l--~~~d~lii-~G~~~~~~~~~~l~~~~~~~l~~~~~~~~~pv   74 (196)
T TIGR01855         1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDS---KEA--ELADKLIL-PGVGAFGAAMARLRENGLDLFVELVVRLGKPV   74 (196)
T ss_pred             CEEEecCCcHHHHHHHHHHHCCCcEEEEcCH---HHh--ccCCEEEE-CCCCCHHHHHHHHHHcCcHHHHHHHHhCCCCE
Confidence            68999986  577999999999999999853   333  37999999 6777764321    11 2344 6666 68999


Q ss_pred             eeecHHHHHHHHH
Q 039151          265 FGICMGHQLLGQA  277 (279)
Q Consensus       265 LGICLGhQLLa~A  277 (279)
                      ||||+|||+|+.+
T Consensus        75 lGiC~G~Qll~~~   87 (196)
T TIGR01855        75 LGICLGMQLLFER   87 (196)
T ss_pred             EEECHHHHHhhhc
Confidence            9999999999987

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=99.25  E-value=2.4e-11  Score=111.40  Aligned_cols=77  Identities=26%  Similarity=0.455  Sum_probs=58.3

Q ss_pred             hHHHHHHHHHCCCeEEEEcCCCC----hhhhhccCCCeEEEcCCCCCCC--------C--------ChHHHHHHHHHH-C
Q 039151          202 KHNILRRLASYGCQIIVVPSTWP----ASETLKLKPDGVLFSNGPGDPS--------A--------VPYAVAIVKELL-G  260 (279)
Q Consensus       202 k~~I~r~L~~~G~~v~vvp~~~~----~~~i~~~~~DgIiLSgGPGdp~--------~--------~~~~i~~Ir~~~-~  260 (279)
                      ...+++++.+.|..+.++|....    .+++. ..+|||||+|||.|..        .        ...++++++.++ .
T Consensus        28 ~~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l-~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~  106 (254)
T PRK11366         28 QEKYLNAIIHAGGLPIALPHALAEPSLLEQLL-PKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALER  106 (254)
T ss_pred             HHHHHHHHHHCCCEEEEecCCCCCHHHHHHHH-HhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHC
Confidence            45578888889998888885432    22332 3699999999987531        1        124567888888 6


Q ss_pred             CCCEeeecHHHHHHHHHcC
Q 039151          261 KVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       261 ~~PILGICLGhQLLa~AlG  279 (279)
                      ++|+||||+|||+|+.|+|
T Consensus       107 ~~PILGICrG~Qllnva~G  125 (254)
T PRK11366        107 RIPIFAICRGLQELVVATG  125 (254)
T ss_pred             CCCEEEECHhHHHHHHHhC
Confidence            9999999999999999997

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.25  E-value=2.8e-11  Score=106.20  Aligned_cols=83  Identities=20%  Similarity=0.400  Sum_probs=65.2

Q ss_pred             cEEEEEEc-CchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHH-CCCCEe
Q 039151          192 YRVIAYDF-GIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELL-GKVPVF  265 (279)
Q Consensus       192 ~~I~viD~-G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~-~~~PIL  265 (279)
                      |+|.++++ |...+.++.|+..|+++..++.   .+++  .++|||||+|||++..+.    ....+.+|++. .++|+|
T Consensus         2 m~~~i~~~~g~~~~~~~~l~~~g~~~~~~~~---~~~l--~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~Pil   76 (189)
T PRK13525          2 MKIGVLALQGAVREHLAALEALGAEAVEVRR---PEDL--DEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVF   76 (189)
T ss_pred             CEEEEEEcccCHHHHHHHHHHCCCEEEEeCC---hhHh--ccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEE
Confidence            57899998 5666778999999999988864   3344  369999999998754321    22357788888 699999


Q ss_pred             eecHHHHHHHHHcC
Q 039151          266 GICMGHQLLGQALG  279 (279)
Q Consensus       266 GICLGhQLLa~AlG  279 (279)
                      |||+|+|+|+.++|
T Consensus        77 GIC~G~QlL~~~~g   90 (189)
T PRK13525         77 GTCAGMILLAKEIE   90 (189)
T ss_pred             EECHHHHHHHhhcc
Confidence            99999999999875

>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]

Probab=99.22  E-value=7.4e-12  Score=121.22  Aligned_cols=85  Identities=32%  Similarity=0.549  Sum_probs=69.4

Q ss_pred             EEEEEEcCch--HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHH-HHH-CCCCEeeec
Q 039151          193 RVIAYDFGIK--HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVK-ELL-GKVPVFGIC  268 (279)
Q Consensus       193 ~I~viD~G~k--~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir-~~~-~~~PILGIC  268 (279)
                      +|+++|||..  +-|-|.+++....-+++|.++++..|.+..|.||||||||-+.++.+  ...+. .++ -++|+||||
T Consensus        18 ~i~iLD~GaQY~~~I~RrvRel~v~se~~p~~t~~~~i~~~~~rgiIiSGGP~SVya~d--AP~~dp~if~~~vpvLGIC   95 (552)
T KOG1622|consen   18 TILILDFGAQYGKVIDRRVRELNVQSEILPLTTPAKTITEYGPRGIIISGGPNSVYAED--APSFDPAIFELGVPVLGIC   95 (552)
T ss_pred             eEEEEeccchhhHHHHHHHHHHhhhhhhccCCChhhhhhcCCceEEEEeCCCCccccCc--CCCCChhHhccCCcceeeh
Confidence            7999999984  55889999999999999999999999888999999999999865421  01111 223 389999999


Q ss_pred             HHHHHHHHHcC
Q 039151          269 MGHQLLGQALG  279 (279)
Q Consensus       269 LGhQLLa~AlG  279 (279)
                      +|||+|+.-+|
T Consensus        96 YGmQ~i~~~~G  106 (552)
T KOG1622|consen   96 YGMQLINKLNG  106 (552)
T ss_pred             hHHHHHHHHhC
Confidence            99999999876

>TIGR00337 PyrG CTP synthase

Probab=99.21  E-value=2.2e-11  Score=121.36  Aligned_cols=89  Identities=18%  Similarity=0.267  Sum_probs=68.2

Q ss_pred             CccEEEEEE-c-C---chHHHHHHHHHCCC--eEEEEcCCCChhhhhc------cCCCeEEEcCCCCCCCCChHHHHHHH
Q 039151          190 KTYRVIAYD-F-G---IKHNILRRLASYGC--QIIVVPSTWPASETLK------LKPDGVLFSNGPGDPSAVPYAVAIVK  256 (279)
Q Consensus       190 ~~~~I~viD-~-G---~k~~I~r~L~~~G~--~v~vvp~~~~~~~i~~------~~~DgIiLSgGPGdp~~~~~~i~~Ir  256 (279)
                      ...+|+++- | .   ...+|.++|..+|+  .+.+.+...+.+++..      .++|||+|+||||++.. ...++.++
T Consensus       288 ~~v~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~~~-~g~i~ai~  366 (525)
T TIGR00337       288 HEVTIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGERGV-EGKILAIK  366 (525)
T ss_pred             CCcEEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCChhh-cChHHHHH
Confidence            357888873 3 1   25789999999997  5555555455555432      24999999999999874 45677888


Q ss_pred             HHH-CCCCEeeecHHHHHHHHHcC
Q 039151          257 ELL-GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       257 ~~~-~~~PILGICLGhQLLa~AlG  279 (279)
                      .+. .++|+||||+|||+|+.++|
T Consensus       367 ~a~e~~iP~LGIClG~Qll~i~~g  390 (525)
T TIGR00337       367 YARENNIPFLGICLGMQLAVIEFA  390 (525)
T ss_pred             HHHHcCCCEEEEcHHHHHHHHHHH
Confidence            888 79999999999999999876

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.21  E-value=3.2e-11  Score=107.37  Aligned_cols=80  Identities=23%  Similarity=0.385  Sum_probs=57.8

Q ss_pred             cEEEEEEcCc--hHHHHHHHHHCCC--eEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChH------HHH-HHHHHH-
Q 039151          192 YRVIAYDFGI--KHNILRRLASYGC--QIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPY------AVA-IVKELL-  259 (279)
Q Consensus       192 ~~I~viD~G~--k~~I~r~L~~~G~--~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~------~i~-~Ir~~~-  259 (279)
                      +||+|||||.  .+++.++|++.|+  ++.++.   +.+++  .++|+|||+|+ +...+...      ..+ .++.+. 
T Consensus         2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~---~~~~l--~~~d~lIlpG~-~~~~~~~~~l~~~~~~~~~~~~~~~   75 (209)
T PRK13146          2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTA---DPDAV--AAADRVVLPGV-GAFADCMRGLRAVGLGEAVIEAVLA   75 (209)
T ss_pred             CeEEEEECCCChHHHHHHHHHHcCCCccEEEEC---CHHHh--cCCCEEEECCC-CcHHHHHHHHHHCCcHHHHHHHHHh
Confidence            6899999987  7899999999999  555543   45665  48999999654 43322111      122 344444 


Q ss_pred             CCCCEeeecHHHHHHHHH
Q 039151          260 GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       260 ~~~PILGICLGhQLLa~A  277 (279)
                      .++|+||||+|||+|+.+
T Consensus        76 ~~~PvlGiC~G~q~l~~~   93 (209)
T PRK13146         76 AGRPFLGICVGMQLLFER   93 (209)
T ss_pred             CCCcEEEECHHHHHHhhc
Confidence            689999999999999987

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.21  E-value=4.8e-11  Score=105.13  Aligned_cols=74  Identities=22%  Similarity=0.354  Sum_probs=58.1

Q ss_pred             HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCC----ChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          203 HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA----VPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       203 ~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~----~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      ..+.+.|+++|.+++++..+. .+++  .++|+|||+|||+++.+    .....+.|++++ .++|+||||+|||+|+.+
T Consensus        17 ~~~~~~l~~~g~~~~~~~~~~-~~~l--~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~   93 (200)
T PRK13527         17 DALKRALDELGIDGEVVEVRR-PGDL--PDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKE   93 (200)
T ss_pred             HHHHHHHHhcCCCeEEEEeCC-hHHh--ccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence            467788899999888877643 3444  37999999999987642    123578888888 689999999999999999


Q ss_pred             cC
Q 039151          278 LG  279 (279)
Q Consensus       278 lG  279 (279)
                      +|
T Consensus        94 ~g   95 (200)
T PRK13527         94 VG   95 (200)
T ss_pred             hc
Confidence            75

>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=8e-11  Score=116.05  Aligned_cols=88  Identities=30%  Similarity=0.590  Sum_probs=65.4

Q ss_pred             ccEEEEEEc--CchHHHHHHHHHC-CCeEEE-EcCCCChhh----hhc-cCCCeEEEcCCCCCCCCChHHHHHHHHHH--
Q 039151          191 TYRVIAYDF--GIKHNILRRLASY-GCQIIV-VPSTWPASE----TLK-LKPDGVLFSNGPGDPSAVPYAVAIVKELL--  259 (279)
Q Consensus       191 ~~~I~viD~--G~k~~I~r~L~~~-G~~v~v-vp~~~~~~~----i~~-~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--  259 (279)
                      ..|+++||+  ..+.|+++.|.+. |...++ +.++...++    +.+ -.+|+||+++|||+| .+...+..+.+++  
T Consensus        14 rl~~LlID~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P-~~a~d~gI~~rl~~~   92 (767)
T KOG1224|consen   14 RLRTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSP-MCAADIGICLRLLLE   92 (767)
T ss_pred             heeEEEEecccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCC-CcHHHHHHHHHHHHh
Confidence            479999998  5689999999764 554444 444443333    221 249999999999999 4555666665555  


Q ss_pred             -CCCCEeeecHHHHHHHHHcC
Q 039151          260 -GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       260 -~~~PILGICLGhQLLa~AlG  279 (279)
                       +.+||||||||||.|+++.|
T Consensus        93 ~~~iPilGICLGfQal~l~hG  113 (767)
T KOG1224|consen   93 CRDIPILGICLGFQALGLVHG  113 (767)
T ss_pred             cCCCceeeeehhhHhHhhhcc
Confidence             57999999999999999876

>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.17  E-value=3.4e-11  Score=107.88  Aligned_cols=78  Identities=27%  Similarity=0.520  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHCCCeEEEEcCCCChhhhhc--cCCCeEEEcCCCCC--CC-------C-C--------hHHHHHHHHHH-C
Q 039151          202 KHNILRRLASYGCQIIVVPSTWPASETLK--LKPDGVLFSNGPGD--PS-------A-V--------PYAVAIVKELL-G  260 (279)
Q Consensus       202 k~~I~r~L~~~G~~v~vvp~~~~~~~i~~--~~~DgIiLSgGPGd--p~-------~-~--------~~~i~~Ir~~~-~  260 (279)
                      ..++++++.+.|+.+.++|+..+.+++..  ...|||||+||+-|  |.       . .        ..++.+++.++ .
T Consensus        26 ~~~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~  105 (217)
T PF07722_consen   26 AASYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGR  105 (217)
T ss_dssp             EHHHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCT
T ss_pred             hHHHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhc
Confidence            46789999999999999999865544332  47999999999832  21       1 1        12455666666 6


Q ss_pred             CCCEeeecHHHHHHHHHcC
Q 039151          261 KVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       261 ~~PILGICLGhQLLa~AlG  279 (279)
                      ++||||||+|||+|+.++|
T Consensus       106 ~~PilGICrG~Q~lnv~~G  124 (217)
T PF07722_consen  106 GKPILGICRGMQLLNVAFG  124 (217)
T ss_dssp             T--EEEETHHHHHHHHHCC
T ss_pred             CCCEEEEcHHHHHHHHHhC
Confidence            9999999999999999987

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=99.14  E-value=1.6e-10  Score=116.05  Aligned_cols=81  Identities=25%  Similarity=0.455  Sum_probs=64.9

Q ss_pred             ccEEEEEEcCch--HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC------hHHHHHHHHHH-CC
Q 039151          191 TYRVIAYDFGIK--HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV------PYAVAIVKELL-GK  261 (279)
Q Consensus       191 ~~~I~viD~G~k--~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~------~~~i~~Ir~~~-~~  261 (279)
                      ..+|++||||+.  +++.++|+++|+++.+++.   .+++  .++|+||| +|+|++...      ..+.+.|++++ .+
T Consensus         6 ~~~i~iiDyG~GN~~sl~~al~~~G~~v~~v~~---~~~l--~~~D~lIl-pG~gs~~~~m~~L~~~gl~~~i~~~i~~g   79 (538)
T PLN02617          6 DSEVTLLDYGAGNVRSVRNAIRHLGFTIKDVQT---PEDI--LNADRLIF-PGVGAFGSAMDVLNNRGMAEALREYIQND   79 (538)
T ss_pred             CCeEEEEECCCCCHHHHHHHHHHCCCeEEEECC---hhhh--ccCCEEEE-CCCCCHHHHHHHHHHcCHHHHHHHHHHcC
Confidence            468999999885  8999999999999988863   3455  37999999 667776432      12456788877 68


Q ss_pred             CCEeeecHHHHHHHHH
Q 039151          262 VPVFGICMGHQLLGQA  277 (279)
Q Consensus       262 ~PILGICLGhQLLa~A  277 (279)
                      +|+||||+|||||+.+
T Consensus        80 ~PvLGIC~G~QlLa~~   95 (538)
T PLN02617         80 RPFLGICLGLQLLFES   95 (538)
T ss_pred             CCEEEECHHHHHHhhh
Confidence            9999999999999986

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=99.11  E-value=2.3e-10  Score=103.66  Aligned_cols=77  Identities=30%  Similarity=0.544  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHCCCeEEEEcCCCC---hhhhhccCCCeEEEcCCCC-----------------CCCCChHHHHHHHHHH-C
Q 039151          202 KHNILRRLASYGCQIIVVPSTWP---ASETLKLKPDGVLFSNGPG-----------------DPSAVPYAVAIVKELL-G  260 (279)
Q Consensus       202 k~~I~r~L~~~G~~v~vvp~~~~---~~~i~~~~~DgIiLSgGPG-----------------dp~~~~~~i~~Ir~~~-~  260 (279)
                      ..++++...+.|.-+.++|.-.+   +.+++ ...|||+||||-.                 +|.+...++.+||.++ +
T Consensus        28 ~~~yv~ai~~aGg~pillP~~~d~~~~~~~l-~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~  106 (243)
T COG2071          28 PYDYVDAIIKAGGIPILLPALEDPEDARQYL-DLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALER  106 (243)
T ss_pred             HHHHHHHHHHcCCceEEecCCCCHHHHHHHH-hhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHc
Confidence            35677888788988889994333   33343 3689999999921                 1223456889999999 7


Q ss_pred             CCCEeeecHHHHHHHHHcC
Q 039151          261 KVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       261 ~~PILGICLGhQLLa~AlG  279 (279)
                      ++||||||+|+|+|+.|||
T Consensus       107 ~iPILgICRG~QllNVa~G  125 (243)
T COG2071         107 GIPILGICRGLQLLNVALG  125 (243)
T ss_pred             CCCEEEEccchHHHHHHhc
Confidence            9999999999999999998

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=99.11  E-value=2.6e-10  Score=99.84  Aligned_cols=80  Identities=19%  Similarity=0.363  Sum_probs=61.9

Q ss_pred             EEEEEc-CchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCC----ChHHHHHHHHHH-CCCCEeee
Q 039151          194 VIAYDF-GIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA----VPYAVAIVKELL-GKVPVFGI  267 (279)
Q Consensus       194 I~viD~-G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~----~~~~i~~Ir~~~-~~~PILGI  267 (279)
                      |.|+-+ |...+.+++|++.|+++.+++.   .+++  .++|+|||+||+++..+    .....+.||++. .++|++||
T Consensus         2 igvl~~qg~~~e~~~~l~~~g~~~~~v~~---~~~l--~~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGI   76 (184)
T TIGR03800         2 IGVLALQGAVREHARALEALGVEGVEVKR---PEQL--DEIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGT   76 (184)
T ss_pred             EEEEEccCCHHHHHHHHHHCCCEEEEECC---hHHh--ccCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEE
Confidence            555555 7777788999999999998864   3444  37999999999865421    223567788888 68999999


Q ss_pred             cHHHHHHHHHc
Q 039151          268 CMGHQLLGQAL  278 (279)
Q Consensus       268 CLGhQLLa~Al  278 (279)
                      |+|||+|+.++
T Consensus        77 C~G~qlL~~~~   87 (184)
T TIGR03800        77 CAGLIMLAKEI   87 (184)
T ss_pred             CHHHHHHHhhh
Confidence            99999999885

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=99.08  E-value=3.1e-10  Score=103.09  Aligned_cols=75  Identities=24%  Similarity=0.364  Sum_probs=53.9

Q ss_pred             HHHHHHHHH----CCCeEEEEcCCC---Chh---hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHHH
Q 039151          203 HNILRRLAS----YGCQIIVVPSTW---PAS---ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGH  271 (279)
Q Consensus       203 ~~I~r~L~~----~G~~v~vvp~~~---~~~---~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGh  271 (279)
                      .++.++|..    .+.++.+...+.   ...   +.+ .++||||++|||+.+.. ...+..++.++ .++|+||||+||
T Consensus        17 ~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l-~~~dgivl~GG~~~~~~-~~~~~~i~~~~~~~~PvlGIClG~   94 (235)
T cd01746          17 LSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEAL-KGADGILVPGGFGIRGV-EGKILAIKYARENNIPFLGICLGM   94 (235)
T ss_pred             HHHHHHHHHHHHHcCCeeEEEEeChhhcCccchhhhh-ccCCEEEECCCCCCcch-hhHHHHHHHHHHCCceEEEEEhHH
Confidence            445555543    556666654332   111   222 47999999999998875 45677888888 699999999999


Q ss_pred             HHHHHHcC
Q 039151          272 QLLGQALG  279 (279)
Q Consensus       272 QLLa~AlG  279 (279)
                      |+|+.++|
T Consensus        95 Q~l~~~~g  102 (235)
T cd01746          95 QLAVIEFA  102 (235)
T ss_pred             HHHHHHHH
Confidence            99999986

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=99.05  E-value=1.3e-09  Score=98.19  Aligned_cols=82  Identities=28%  Similarity=0.363  Sum_probs=63.2

Q ss_pred             cEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCC--------CChHHHHHHHHHH-
Q 039151          192 YRVIAYDF-GI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPS--------AVPYAVAIVKELL-  259 (279)
Q Consensus       192 ~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~--------~~~~~i~~Ir~~~-  259 (279)
                      +||+|+|| |.  ...+.+.|++.|+++.++++...  ++  .++|+|||+||+..-.        ......+.++++. 
T Consensus         1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~~~--~l--~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~   76 (227)
T TIGR01737         1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDG--SL--PDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAE   76 (227)
T ss_pred             CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecCCC--CC--CCCCEEEECCCCcccccccccchhcchHHHHHHHHHHH
Confidence            47999999 45  35789999999999999876422  23  3799999999974211        1234667788877 


Q ss_pred             CCCCEeeecHHHHHHHHH
Q 039151          260 GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       260 ~~~PILGICLGhQLLa~A  277 (279)
                      .++|++|||.|+|+|+.+
T Consensus        77 ~g~pvlgIC~G~QlLa~~   94 (227)
T TIGR01737        77 KGVPVLGICNGFQILVEA   94 (227)
T ss_pred             cCCEEEEECHHHHHHHHc
Confidence            689999999999999985

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=99.03  E-value=1e-09  Score=101.75  Aligned_cols=78  Identities=24%  Similarity=0.322  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHCCCeEEEEcCCCChhhhhc--cCCCeEEEcCCCCCCCC---ChHHHHHHHHHH-C-----CCCEeeecHH
Q 039151          202 KHNILRRLASYGCQIIVVPSTWPASETLK--LKPDGVLFSNGPGDPSA---VPYAVAIVKELL-G-----KVPVFGICMG  270 (279)
Q Consensus       202 k~~I~r~L~~~G~~v~vvp~~~~~~~i~~--~~~DgIiLSgGPGdp~~---~~~~i~~Ir~~~-~-----~~PILGICLG  270 (279)
                      ..++++++++.|+.|..++.+.+.+++.+  ..+|||+++|||.+...   ......+++.++ .     .+|+||||||
T Consensus        22 ~~~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG  101 (273)
T cd01747          22 AASYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLG  101 (273)
T ss_pred             HHHHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHH
Confidence            46789999999999888876643344332  47899999999877642   233445556665 2     3899999999


Q ss_pred             HHHHHHHcC
Q 039151          271 HQLLGQALG  279 (279)
Q Consensus       271 hQLLa~AlG  279 (279)
                      ||+|+.++|
T Consensus       102 ~QlL~~~~g  110 (273)
T cd01747         102 FELLTYLTS  110 (273)
T ss_pred             HHHHHHHhC
Confidence            999999876

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=98.93  E-value=3.5e-09  Score=97.05  Aligned_cols=81  Identities=17%  Similarity=0.325  Sum_probs=62.3

Q ss_pred             cEEEEEEc-CchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCC----ChHHHHHHHHHH-CCCCEe
Q 039151          192 YRVIAYDF-GIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA----VPYAVAIVKELL-GKVPVF  265 (279)
Q Consensus       192 ~~I~viD~-G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~----~~~~i~~Ir~~~-~~~PIL  265 (279)
                      ++|.|+.+ |.-.+..++|++.|+++.++..   .+++.  ++|+|||+||..+...    .....+.|+++. .++|+|
T Consensus         2 m~igVLa~qG~~~e~~~aL~~lG~ev~~v~~---~~~L~--~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvL   76 (248)
T PLN02832          2 MAIGVLALQGSFNEHIAALRRLGVEAVEVRK---PEQLE--GVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVW   76 (248)
T ss_pred             cEEEEEeCCCchHHHHHHHHHCCCcEEEeCC---HHHhc--cCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEE
Confidence            57999998 7778888999999999988864   35553  7899999875432211    113566778777 689999


Q ss_pred             eecHHHHHHHHH
Q 039151          266 GICMGHQLLGQA  277 (279)
Q Consensus       266 GICLGhQLLa~A  277 (279)
                      |||+|||+|+..
T Consensus        77 GiC~GmqlLa~~   88 (248)
T PLN02832         77 GTCAGLIFLAER   88 (248)
T ss_pred             EEChhHHHHHHH
Confidence            999999999875

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=98.91  E-value=2.9e-09  Score=92.77  Aligned_cols=70  Identities=24%  Similarity=0.456  Sum_probs=54.0

Q ss_pred             HHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151          205 ILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELL-GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       205 I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~-~~~PILGICLGhQLLa~AlG  279 (279)
                      -.+.|++.|+++..+...   +++  .++|+||++||+....+.    ....+.|++++ .++|+||||+|||+|+.++|
T Consensus        13 ~~~~l~~~g~~v~~v~~~---~~l--~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~~~   87 (183)
T cd01749          13 HIRALERLGVEVIEVRTP---EDL--EGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLILLAKEVE   87 (183)
T ss_pred             HHHHHHHCCCeEEEECCH---HHh--ccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHHHHHHHhc
Confidence            348999999999988652   333  379999999988543321    23467788888 79999999999999999875

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=98.91  E-value=6.2e-09  Score=96.08  Aligned_cols=87  Identities=21%  Similarity=0.279  Sum_probs=62.2

Q ss_pred             ccEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCCCChhh-hhccCCCeEEEcCCCC--CCCCC---------hHHHHHH
Q 039151          191 TYRVIAYDF-GI--KHNILRRLASYGCQIIVVPSTWPASE-TLKLKPDGVLFSNGPG--DPSAV---------PYAVAIV  255 (279)
Q Consensus       191 ~~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~~~~~~-i~~~~~DgIiLSgGPG--dp~~~---------~~~i~~I  255 (279)
                      ++||+|+.+ |+  .....+.|++.|+++.+++.....+. ....++|+|+|.||..  |....         ....+.|
T Consensus         3 ~~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~~I   82 (261)
T PRK01175          3 SIRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLKAVLRKDI   82 (261)
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCCcccccccchhhHHHHHHHHHHHH
Confidence            368999998 76  46778999999999999875321110 1114799999999963  32211         1122667


Q ss_pred             HHHH-CCCCEeeecHHHHHHHHH
Q 039151          256 KELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       256 r~~~-~~~PILGICLGhQLLa~A  277 (279)
                      ++++ .++|+||||+|+|+|+.+
T Consensus        83 k~f~~~gkpVLGICnG~QlLa~~  105 (261)
T PRK01175         83 EEFIDEGYPIIGICNGFQVLVEL  105 (261)
T ss_pred             HHHHHCCCeEEEECHHHHHHHHC
Confidence            8877 799999999999999974

>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]

Probab=98.86  E-value=5.7e-09  Score=92.53  Aligned_cols=79  Identities=30%  Similarity=0.422  Sum_probs=54.9

Q ss_pred             cCchHHHHH-HHHHCCCeEEEEc---CCCC-hhhhhccCCCeEEEcCCCCCCCCChHH----HHHHHHHH-CCCCEeeec
Q 039151          199 FGIKHNILR-RLASYGCQIIVVP---STWP-ASETLKLKPDGVLFSNGPGDPSAVPYA----VAIVKELL-GKVPVFGIC  268 (279)
Q Consensus       199 ~G~k~~I~r-~L~~~G~~v~vvp---~~~~-~~~i~~~~~DgIiLSgGPGdp~~~~~~----i~~Ir~~~-~~~PILGIC  268 (279)
                      ||-..|++- .|.+-|....++.   ...+ .+++.  ++||++|||++.|......+    +..++++. .++||+|||
T Consensus        23 yGgy~nvfvsllg~ege~wd~frV~~gefP~~~Dl~--ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGIC  100 (245)
T KOG3179|consen   23 YGGYFNVFVSLLGDEGEQWDLFRVIDGEFPQEEDLE--KYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGIC  100 (245)
T ss_pred             hcCHHHHHHHHhcccCceeEEEEEecCCCCChhhhh--hhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEe
Confidence            455555554 4556677666554   3333 33443  69999999999887654433    34556666 589999999


Q ss_pred             HHHHHHHHHcC
Q 039151          269 MGHQLLGQALG  279 (279)
Q Consensus       269 LGhQLLa~AlG  279 (279)
                      +|||++|+|.|
T Consensus       101 FGHQiiara~G  111 (245)
T KOG3179|consen  101 FGHQIIARAKG  111 (245)
T ss_pred             ccHHHHHHhhC
Confidence            99999999987

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.85  E-value=9.4e-09  Score=89.97  Aligned_cols=80  Identities=18%  Similarity=0.258  Sum_probs=62.2

Q ss_pred             cEEEEEEc-CchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCC--CC--ChHHHHHHHHHHCCCCEee
Q 039151          192 YRVIAYDF-GIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDP--SA--VPYAVAIVKELLGKVPVFG  266 (279)
Q Consensus       192 ~~I~viD~-G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp--~~--~~~~i~~Ir~~~~~~PILG  266 (279)
                      ++|.|+.+ |.-..-.++|++.|+++.++.   +++++  .++|+|||+||++..  ..  .....+.|+++..++|++|
T Consensus         3 ~~igVLalqG~~~Eh~~al~~lG~~v~~v~---~~~~l--~~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~~kpilG   77 (179)
T PRK13526          3 QKVGVLAIQGGYQKHADMFKSLGVEVKLVK---FNNDF--DSIDRLVIPGGESTTLLNLLNKHQIFDKLYNFCSSKPVFG   77 (179)
T ss_pred             cEEEEEECCccHHHHHHHHHHcCCcEEEEC---CHHHH--hCCCEEEECCChHHHHHHHhhhcCcHHHHHHHHcCCcEEE
Confidence            57889987 776677889999999988775   34555  379999999886654  11  1236778888776789999


Q ss_pred             ecHHHHHHHH
Q 039151          267 ICMGHQLLGQ  276 (279)
Q Consensus       267 ICLGhQLLa~  276 (279)
                      ||.|+|+|+.
T Consensus        78 ICaG~qlL~~   87 (179)
T PRK13526         78 TCAGSIILSK   87 (179)
T ss_pred             EcHHHHHHHc
Confidence            9999999986

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=98.85  E-value=1.1e-08  Score=92.83  Aligned_cols=83  Identities=22%  Similarity=0.174  Sum_probs=59.4

Q ss_pred             EEEEc-Cc--hHHHHHHHHHCCCeEEEEcCCCChhh-hhccCCCeEEEcCCCCCCCC--------ChH-HHHHHHHHH-C
Q 039151          195 IAYDF-GI--KHNILRRLASYGCQIIVVPSTWPASE-TLKLKPDGVLFSNGPGDPSA--------VPY-AVAIVKELL-G  260 (279)
Q Consensus       195 ~viD~-G~--k~~I~r~L~~~G~~v~vvp~~~~~~~-i~~~~~DgIiLSgGPGdp~~--------~~~-~i~~Ir~~~-~  260 (279)
                      +|+-+ |.  ..++++.|++.|+++.+++....... ....++|+|||+||+.....        ... ..+.++++. .
T Consensus         2 ~vl~~pG~n~~~~~~~al~~aG~~v~~v~~~~~~~~~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~   81 (238)
T cd01740           2 AVLRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAER   81 (238)
T ss_pred             EEEEcCCcCCHHHHHHHHHHcCCCEEEEeccCCccccCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHhC
Confidence            44444 65  56789999999999999986432111 11147999999999742111        112 667888888 6


Q ss_pred             CCCEeeecHHHHHHHHH
Q 039151          261 KVPVFGICMGHQLLGQA  277 (279)
Q Consensus       261 ~~PILGICLGhQLLa~A  277 (279)
                      ++|+||||.|+|+|+.+
T Consensus        82 g~pvlGIC~G~QlL~~~   98 (238)
T cd01740          82 GGLVLGICNGFQILVEL   98 (238)
T ss_pred             CCeEEEECcHHHHHHHc
Confidence            99999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=98.81  E-value=1.3e-08  Score=89.43  Aligned_cols=80  Identities=16%  Similarity=0.196  Sum_probs=57.8

Q ss_pred             EEEEEcCc---hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC-----hHHHHHHHHHH-CCCCE
Q 039151          194 VIAYDFGI---KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV-----PYAVAIVKELL-GKVPV  264 (279)
Q Consensus       194 I~viD~G~---k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~-----~~~i~~Ir~~~-~~~PI  264 (279)
                      |+++++|-   -.++.+.+.++|+++++++...+   +  .++|+|+|.||.....+.     ....+.|++++ .++|+
T Consensus         1 ~~~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~~---~--~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pv   75 (194)
T cd01750           1 IAVIRYPDISNFTDLDPLAREPGVDVRYVEVPEG---L--GDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPV   75 (194)
T ss_pred             CEeecCCCccCHHHHHHHHhcCCceEEEEeCCCC---C--CCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcE
Confidence            46777763   45566778889999999875433   2  368999998777322211     12456777777 69999


Q ss_pred             eeecHHHHHHHHHc
Q 039151          265 FGICMGHQLLGQAL  278 (279)
Q Consensus       265 LGICLGhQLLa~Al  278 (279)
                      ||||.|+|+|+.++
T Consensus        76 lgiC~G~qlL~~~~   89 (194)
T cd01750          76 LGICGGYQMLGKYI   89 (194)
T ss_pred             EEECHHHHHhhhhc
Confidence            99999999999875

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=98.80  E-value=3.2e-08  Score=88.83  Aligned_cols=82  Identities=28%  Similarity=0.357  Sum_probs=61.7

Q ss_pred             cEEEEEEc-Cch--HHHHHHHH-HCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCC--------CCChHHHHHHHHHH
Q 039151          192 YRVIAYDF-GIK--HNILRRLA-SYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDP--------SAVPYAVAIVKELL  259 (279)
Q Consensus       192 ~~I~viD~-G~k--~~I~r~L~-~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp--------~~~~~~i~~Ir~~~  259 (279)
                      +||+|++| |..  .++.++|+ ..|+++..++...  .++  .++|+|+|+||+..-        .......+.++++.
T Consensus         1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~--~~l--~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~   76 (219)
T PRK03619          1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKE--TDL--DGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFA   76 (219)
T ss_pred             CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCc--CCC--CCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHH
Confidence            47999999 543  56889998 8899998886532  233  378999999987421        11245677788877


Q ss_pred             -CCCCEeeecHHHHHHHHH
Q 039151          260 -GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       260 -~~~PILGICLGhQLLa~A  277 (279)
                       .++|++|||.|+|+|+.+
T Consensus        77 ~~g~~ilgIC~G~qlLa~~   95 (219)
T PRK03619         77 EKGKPVLGICNGFQILTEA   95 (219)
T ss_pred             HCCCEEEEECHHHHHHHHc
Confidence             699999999999999986

>PRK05380 pyrG CTP synthetase; Validated

Probab=98.79  E-value=1.6e-08  Score=101.07  Aligned_cols=88  Identities=18%  Similarity=0.312  Sum_probs=63.3

Q ss_pred             CccEEEEEE-c-C---chHHHHHHHHHCC----CeEEEEcCCC---C---hhhhhccCCCeEEEcCCCCCCCCChHHHHH
Q 039151          190 KTYRVIAYD-F-G---IKHNILRRLASYG----CQIIVVPSTW---P---ASETLKLKPDGVLFSNGPGDPSAVPYAVAI  254 (279)
Q Consensus       190 ~~~~I~viD-~-G---~k~~I~r~L~~~G----~~v~vvp~~~---~---~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~  254 (279)
                      ...+|+++- | .   ...|+.++|+..|    +++.+...+.   +   ..+.+ .++|||+|+||+|++.. ...++.
T Consensus       287 ~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L-~~~DGIIlpGGfG~~~~-~g~i~~  364 (533)
T PRK05380        287 GEVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELL-KGVDGILVPGGFGERGI-EGKILA  364 (533)
T ss_pred             CceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHh-hcCCEEEecCCCCcccc-ccHHHH
Confidence            457888884 3 2   2567888887654    4555544332   1   11222 37999999999998654 356788


Q ss_pred             HHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151          255 VKELL-GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       255 Ir~~~-~~~PILGICLGhQLLa~AlG  279 (279)
                      ++.+. .++|+||||+|||+|+.++|
T Consensus       365 i~~a~e~~iPiLGIClGmQll~va~G  390 (533)
T PRK05380        365 IRYARENNIPFLGICLGMQLAVIEFA  390 (533)
T ss_pred             HHHHHHCCCcEEEEchHHHHHHHHhc
Confidence            88888 69999999999999999986

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=98.67  E-value=1.2e-07  Score=89.18  Aligned_cols=90  Identities=17%  Similarity=0.193  Sum_probs=59.5

Q ss_pred             CccEEEEEEcCc-----hHHHHHHHHHCCCe--EEEEcCC----------------CChhhhhccCCCeEEEcCCCCC--
Q 039151          190 KTYRVIAYDFGI-----KHNILRRLASYGCQ--IIVVPST----------------WPASETLKLKPDGVLFSNGPGD--  244 (279)
Q Consensus       190 ~~~~I~viD~G~-----k~~I~r~L~~~G~~--v~vvp~~----------------~~~~~i~~~~~DgIiLSgGPGd--  244 (279)
                      ..++|++++.=-     ...++|.|.....+  ++.+...                .+++++...++||+||+|+|-+  
T Consensus        34 rpl~i~ilNlMp~k~~TE~q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e~~  113 (302)
T PRK05368         34 RPLKILILNLMPKKIETETQFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVEQL  113 (302)
T ss_pred             CCccEEEEeCCCCCchHHHHHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCCCc
Confidence            358999999821     24577777554334  4444221                1344555678999999999976  


Q ss_pred             CCCC-hHH--HHHHHHHH--CCCCEeeecHHHHHHHHHcC
Q 039151          245 PSAV-PYA--VAIVKELL--GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       245 p~~~-~~~--i~~Ir~~~--~~~PILGICLGhQLLa~AlG  279 (279)
                      +.+. +++  +..+.+++  ..+|+||||+|||+++.|+|
T Consensus       114 ~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~alg  153 (302)
T PRK05368        114 PFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLY  153 (302)
T ss_pred             cCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcC
Confidence            4432 322  33333333  48999999999999999987

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=98.62  E-value=1.3e-07  Score=85.26  Aligned_cols=83  Identities=28%  Similarity=0.363  Sum_probs=62.9

Q ss_pred             ccEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCCCChhhhhcc-CCCeEEEcCCC--CCCCC------ChHHHHHHHHH
Q 039151          191 TYRVIAYDF-GI--KHNILRRLASYGCQIIVVPSTWPASETLKL-KPDGVLFSNGP--GDPSA------VPYAVAIVKEL  258 (279)
Q Consensus       191 ~~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~-~~DgIiLSgGP--Gdp~~------~~~~i~~Ir~~  258 (279)
                      ++||+|+-| |.  ...+.++++..|.++..|.+..    +... ++|+|+++||-  ||--.      .....+.++++
T Consensus         2 ~~kvaVi~fpGtN~d~d~~~A~~~aG~~~~~V~~~d----~~~~~~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~   77 (231)
T COG0047           2 RPKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSD----LLLGRDFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREF   77 (231)
T ss_pred             CceEEEEEcCCcCchHHHHHHHHHcCCCceEEEeee----cccCCCccEEEEcCCCCcccccCcchHHhhHHHHHHHHHH
Confidence            368999999 65  4668889998899999887632    2222 69999999884  44322      24566777777


Q ss_pred             H-CCCCEeeecHHHHHHHHH
Q 039151          259 L-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       259 ~-~~~PILGICLGhQLLa~A  277 (279)
                      . +++|+||||-|+|+|.++
T Consensus        78 a~~g~~vLGICNGfQiL~e~   97 (231)
T COG0047          78 AEKGKPVLGICNGFQILSEA   97 (231)
T ss_pred             HHCCCeEEEEcchhHHHHHc
Confidence            7 799999999999999864

>PLN02327 CTP synthase

Probab=98.57  E-value=6.9e-08  Score=96.96  Aligned_cols=88  Identities=23%  Similarity=0.350  Sum_probs=61.3

Q ss_pred             CccEEEEEE-c-C---chHHHHHHHHH----CCCeEEEEcCCC-Chh---------------hhhccCCCeEEEcCCCCC
Q 039151          190 KTYRVIAYD-F-G---IKHNILRRLAS----YGCQIIVVPSTW-PAS---------------ETLKLKPDGVLFSNGPGD  244 (279)
Q Consensus       190 ~~~~I~viD-~-G---~k~~I~r~L~~----~G~~v~vvp~~~-~~~---------------~i~~~~~DgIiLSgGPGd  244 (279)
                      ...+|+++- | .   ...+|..+|..    .+.++.+...+. ..+               +.+ .++|||+++||+|+
T Consensus       296 ~~v~IalVGKY~~l~DAY~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L-~~~DGIvvpGGfG~  374 (557)
T PLN02327        296 EPVRIAMVGKYTGLSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLL-KGADGILVPGGFGD  374 (557)
T ss_pred             CceEEEEEecccCCcHhHHHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhh-ccCCEEEeCCCCCC
Confidence            347888873 4 2   24677788764    466666553321 110               111 47999999999999


Q ss_pred             CCCChHHHHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151          245 PSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       245 p~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~AlG  279 (279)
                      +... ..+..++.+. .++|+||||+|||+++.+++
T Consensus       375 ~~~~-G~i~ai~~are~~iP~LGIClGmQl~viefa  409 (557)
T PLN02327        375 RGVE-GKILAAKYARENKVPYLGICLGMQIAVIEFA  409 (557)
T ss_pred             cccc-cHHHHHHHHHHcCCCEEEEcHHHHHHHHHHH
Confidence            7654 4567778777 79999999999999998864

>PRK06186 hypothetical protein; Validated

Probab=98.54  E-value=2.6e-07  Score=83.79  Aligned_cols=74  Identities=19%  Similarity=0.133  Sum_probs=51.9

Q ss_pred             hHHHHHHHHH----CCCeEEEEcCCC---ChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHHHHH
Q 039151          202 KHNILRRLAS----YGCQIIVVPSTW---PASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQL  273 (279)
Q Consensus       202 k~~I~r~L~~----~G~~v~vvp~~~---~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGhQL  273 (279)
                      ..|+.++|+.    .+.++.+...+.   ..++.+ .++|||++.||-|.-. .+..+..++.+. .++|+||||||||+
T Consensus        17 Y~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l-~~~dgilvpgGfg~rg-~~Gki~ai~~Are~~iP~LGIClGmQ~   94 (229)
T PRK06186         17 HQAIPLALDLAAAVLGLPVDYEWLPTPEITDPEDL-AGFDGIWCVPGSPYRN-DDGALTAIRFARENGIPFLGTCGGFQH   94 (229)
T ss_pred             HHHHHHHHHHHHHhcCCeeEEEEEchhhcCChhhH-hhCCeeEeCCCCCccc-HhHHHHHHHHHHHcCCCeEeechhhHH
Confidence            4677788765    466666654332   111111 3789999999987533 467788999998 79999999999997


Q ss_pred             HHHH
Q 039151          274 LGQA  277 (279)
Q Consensus       274 La~A  277 (279)
                      +..+
T Consensus        95 avIe   98 (229)
T PRK06186         95 ALLE   98 (229)
T ss_pred             HHHH
Confidence            6544

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=98.29  E-value=2.4e-06  Score=75.45  Aligned_cols=71  Identities=18%  Similarity=0.334  Sum_probs=49.2

Q ss_pred             HHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCC--CCC---hHHHHHHHHHH-CCCCEeeecHHHHHHHHHc
Q 039151          205 ILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDP--SAV---PYAVAIVKELL-GKVPVFGICMGHQLLGQAL  278 (279)
Q Consensus       205 I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp--~~~---~~~i~~Ir~~~-~~~PILGICLGhQLLa~Al  278 (279)
                      -++.|++.|+++.++.... .+++.  ++|+|||.||.-..  ...   ....+.|+++. .++|++|||.|+|||+..+
T Consensus        16 ~~~~l~~~G~~v~~~s~~~-~~~l~--~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~~   92 (198)
T cd03130          16 NLELLEAAGAELVPFSPLK-DEELP--DADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMYLGESL   92 (198)
T ss_pred             HHHHHHHCCCEEEEECCCC-CCCCC--CCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHHHh
Confidence            3578899999998875421 12332  48999998763211  111   23567788877 6899999999999998753

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.20  E-value=1.1e-05  Score=60.18  Aligned_cols=72  Identities=29%  Similarity=0.515  Sum_probs=55.3

Q ss_pred             HHHHHHHHHCCCeEEEEcCCCChh--hhhccCCCeEEEcCCCCCCCCC---hHHHHHHHHHH-CCCCEeeecHHHHHH
Q 039151          203 HNILRRLASYGCQIIVVPSTWPAS--ETLKLKPDGVLFSNGPGDPSAV---PYAVAIVKELL-GKVPVFGICMGHQLL  274 (279)
Q Consensus       203 ~~I~r~L~~~G~~v~vvp~~~~~~--~i~~~~~DgIiLSgGPGdp~~~---~~~i~~Ir~~~-~~~PILGICLGhQLL  274 (279)
                      ....+.|++.++++++++......  .....++|++|++||+..+...   ...++.+++.. .++|++|+|.|+|++
T Consensus        15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l   92 (115)
T cd01653          15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL   92 (115)
T ss_pred             HHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence            467788899999999998754311  0112479999999998876543   56778888888 689999999999987

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=98.15  E-value=6.4e-06  Score=81.43  Aligned_cols=84  Identities=23%  Similarity=0.330  Sum_probs=57.8

Q ss_pred             cEEEEEE-c-C---chHHHHHHHHHC----CCeEEEEcCCC-C-----hhhhhccCCCeEEEcCCCCCCCCChHHHHHHH
Q 039151          192 YRVIAYD-F-G---IKHNILRRLASY----GCQIIVVPSTW-P-----ASETLKLKPDGVLFSNGPGDPSAVPYAVAIVK  256 (279)
Q Consensus       192 ~~I~viD-~-G---~k~~I~r~L~~~----G~~v~vvp~~~-~-----~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir  256 (279)
                      .+|+++- | .   ...|+..+|+..    ++++.+...+. +     .+++.. .+|||++.||-|.-. .+..+..++
T Consensus       289 v~IalVGKYv~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~-~~dgIlVPGGFG~RG-~eGkI~Ai~  366 (533)
T COG0504         289 VTIALVGKYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEK-LVDGILVPGGFGYRG-VEGKIAAIR  366 (533)
T ss_pred             eEEEEEECCcCchhHHHHHHHHHHhhhhhcCCceeeEEEccccccccchhhhhh-cCCEEEeCCCCCcCc-hHHHHHHHH
Confidence            6788774 2 1   246788888765    45555554331 1     112222 289999999998543 456788889


Q ss_pred             HHH-CCCCEeeecHHHHHHHHH
Q 039151          257 ELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       257 ~~~-~~~PILGICLGhQLLa~A  277 (279)
                      .+- .++|+||||||||+....
T Consensus       367 yAREn~iP~lGIClGmQ~aviE  388 (533)
T COG0504         367 YARENNIPFLGICLGMQLAVIE  388 (533)
T ss_pred             HHHhcCCCEEEEchhHHHHHHH
Confidence            888 699999999999998754

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.13  E-value=1.2e-05  Score=57.34  Aligned_cols=72  Identities=31%  Similarity=0.517  Sum_probs=54.6

Q ss_pred             HHHHHHHHHCCCeEEEEcCCCChh--hhhccCCCeEEEcCCCCCCCCC---hHHHHHHHHHH-CCCCEeeecHHHHHH
Q 039151          203 HNILRRLASYGCQIIVVPSTWPAS--ETLKLKPDGVLFSNGPGDPSAV---PYAVAIVKELL-GKVPVFGICMGHQLL  274 (279)
Q Consensus       203 ~~I~r~L~~~G~~v~vvp~~~~~~--~i~~~~~DgIiLSgGPGdp~~~---~~~i~~Ir~~~-~~~PILGICLGhQLL  274 (279)
                      .++.+.+++.++.+.+++......  .....++|++|++||+..+...   ...++.+++.. .+.|++|+|.|.|++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~   92 (92)
T cd03128          15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL   92 (92)
T ss_pred             ecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence            467788888999999998754322  1223589999999998876553   56677777777 689999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.08  E-value=7.1e-06  Score=81.74  Aligned_cols=78  Identities=17%  Similarity=0.290  Sum_probs=48.1

Q ss_pred             cEEEEEEcCchHHHHHHHHHCCC-eEEEEcCCCChhhhhccCCCeEEEcCCCCC-CCCC-hHHHHHHHHHHCCCCEeeec
Q 039151          192 YRVIAYDFGIKHNILRRLASYGC-QIIVVPSTWPASETLKLKPDGVLFSNGPGD-PSAV-PYAVAIVKELLGKVPVFGIC  268 (279)
Q Consensus       192 ~~I~viD~G~k~~I~r~L~~~G~-~v~vvp~~~~~~~i~~~~~DgIiLSgGPGd-p~~~-~~~i~~Ir~~~~~~PILGIC  268 (279)
                      ++|-|+...   ++.++++..|. ++.++..+ +++++.  ++|+|||+||.-. ..+. ....+.|+++  ++|+||||
T Consensus         1 m~iGvlal~---sv~~al~~lg~~~~~vv~~~-~~~~l~--~~D~lILPGG~~~~~~~l~~~l~~~i~~~--g~pvlGIC   72 (476)
T PRK06278          1 MEIGLLDIK---GSLPCFENFGNLPTKIIDEN-NIKEIK--DLDGLIIPGGSLVESGSLTDELKKEILNF--DGYIIGIC   72 (476)
T ss_pred             CEEEEEehh---hHHHHHHHhcCCCcEEEEeC-ChHHhc--cCCEEEECCCchhhcchHHHHHHHHHHHc--CCeEEEEc
Confidence            357777763   34556666665 56665432 345663  7999999876311 1111 1222333333  89999999


Q ss_pred             HHHHHHHHH
Q 039151          269 MGHQLLGQA  277 (279)
Q Consensus       269 LGhQLLa~A  277 (279)
                      .|+|||+..
T Consensus        73 gG~QmLg~~   81 (476)
T PRK06278         73 SGFQILSEK   81 (476)
T ss_pred             HHHHhcccc
Confidence            999999875

>PRK00784 cobyric acid synthase; Provisional

Probab=97.97  E-value=2.2e-05  Score=78.36  Aligned_cols=83  Identities=18%  Similarity=0.256  Sum_probs=57.5

Q ss_pred             ccEEEEEEcCc--hHHHHHHHHH-CCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh-----HHHHHHHHHH-CC
Q 039151          191 TYRVIAYDFGI--KHNILRRLAS-YGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP-----YAVAIVKELL-GK  261 (279)
Q Consensus       191 ~~~I~viD~G~--k~~I~r~L~~-~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~-----~~i~~Ir~~~-~~  261 (279)
                      +.+|+|+.+..  ...=++.|++ .|+++..+..   .+++.  ++|+|+|.||.-.-....     ...+.|+++. .+
T Consensus       251 ~~~i~v~~~~~a~~f~nl~~l~~~~g~~v~~~s~---~~~l~--~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g  325 (488)
T PRK00784        251 ALRIAVIRLPRISNFTDFDPLRAEPGVDVRYVRP---GEPLP--DADLVILPGSKNTIADLAWLRESGWDEAIRAHARRG  325 (488)
T ss_pred             ceEEEEEeCCCcCCccChHHHhhcCCCeEEEECC---ccccc--cCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcC
Confidence            47899998532  2222567876 8999988854   23443  689999988762111111     2456777777 68


Q ss_pred             CCEeeecHHHHHHHHHc
Q 039151          262 VPVFGICMGHQLLGQAL  278 (279)
Q Consensus       262 ~PILGICLGhQLLa~Al  278 (279)
                      +|+||||.|+|+|+..+
T Consensus       326 ~pilg~C~G~~~L~~~~  342 (488)
T PRK00784        326 GPVLGICGGYQMLGRRI  342 (488)
T ss_pred             CeEEEECHHHHHHhhhc
Confidence            99999999999999864

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=97.95  E-value=2.5e-05  Score=72.22  Aligned_cols=85  Identities=22%  Similarity=0.267  Sum_probs=55.2

Q ss_pred             cEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCCCC-hhhhhccCCCeEEEcCCCC--CCCCC-----------hHHHHH
Q 039151          192 YRVIAYDF-GI--KHNILRRLASYGCQIIVVPSTWP-ASETLKLKPDGVLFSNGPG--DPSAV-----------PYAVAI  254 (279)
Q Consensus       192 ~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~~~-~~~i~~~~~DgIiLSgGPG--dp~~~-----------~~~i~~  254 (279)
                      +||+|+-| |.  ....+++|+..|+++..|..+.- ..+..-.++|+|+|+||-.  |.-..           ....+.
T Consensus         2 pkV~Vl~~pGtNce~e~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~   81 (259)
T PF13507_consen    2 PKVAVLRFPGTNCERETAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMDA   81 (259)
T ss_dssp             -EEEEEE-TTEEEHHHHHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccchHHHHHHHHhhccHHHHHH
Confidence            58999988 65  57889999999999998865321 1111124799999999863  32221           123567


Q ss_pred             HHHHH-C-CCCEeeecHHHHHHHH
Q 039151          255 VKELL-G-KVPVFGICMGHQLLGQ  276 (279)
Q Consensus       255 Ir~~~-~-~~PILGICLGhQLLa~  276 (279)
                      |++++ + ++|+||||-|+|+|..
T Consensus        82 i~~f~~~~g~~vLGIcNGfQiL~~  105 (259)
T PF13507_consen   82 IREFLERPGGFVLGICNGFQILVE  105 (259)
T ss_dssp             HHHHHHCTT-EEEEECHHHHHHCC
T ss_pred             HHHHHhcCCCeEEEEchHhHHHHH
Confidence            78888 5 8999999999999964

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=97.89  E-value=4.6e-05  Score=72.68  Aligned_cols=78  Identities=26%  Similarity=0.422  Sum_probs=59.5

Q ss_pred             EEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC------hHHHHHHHHHH-CCCC
Q 039151          193 RVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV------PYAVAIVKELL-GKVP  263 (279)
Q Consensus       193 ~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~------~~~i~~Ir~~~-~~~P  263 (279)
                      -|.++|+|.  ..+|-++|+.+|+.+..+..   +.+|.  +.|.+|+ +|.|+..-.      ....+.+|+.+ .++|
T Consensus         3 vv~~ld~~agn~~si~nal~hlg~~i~~v~~---P~DI~--~a~rLIf-PGVGnfg~~~D~L~~~Gf~eplr~YiesgkP   76 (541)
T KOG0623|consen    3 VVTLLDYGAGNVRSIRNALRHLGFSIKDVQT---PGDIL--NADRLIF-PGVGNFGPAMDVLNRTGFAEPLRKYIESGKP   76 (541)
T ss_pred             eEEEEecCCccHHHHHHHHHhcCceeeeccC---chhhc--cCceEee-cCcccchHHHHHHhhhhhHHHHHHHHhcCCC
Confidence            367899976  68899999999999988753   44563  7888888 677764321      23556777777 7999


Q ss_pred             EeeecHHHHHHHH
Q 039151          264 VFGICMGHQLLGQ  276 (279)
Q Consensus       264 ILGICLGhQLLa~  276 (279)
                      ++|||+|.|+|..
T Consensus        77 fmgicvGlQaLF~   89 (541)
T KOG0623|consen   77 FMGICVGLQALFD   89 (541)
T ss_pred             eEeehhhHHHHhc
Confidence            9999999999864

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=97.83  E-value=0.00013  Score=62.83  Aligned_cols=47  Identities=28%  Similarity=0.415  Sum_probs=38.1

Q ss_pred             cCCCeEEEcCCCCCC--CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          231 LKPDGVLFSNGPGDP--SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       231 ~~~DgIiLSgGPGdp--~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      .++|+|++.||++..  ...+...++++++. .++|+.|||.|.++|+.|
T Consensus        75 ~~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a  124 (180)
T cd03169          75 DDYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA  124 (180)
T ss_pred             hHCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence            368999999998532  12356788899888 799999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=97.81  E-value=0.0001  Score=66.32  Aligned_cols=54  Identities=22%  Similarity=0.319  Sum_probs=42.0

Q ss_pred             hhhhhccCCCeEEEcCCCCCCC-------------CChHHHHHHHHHH-CCCCEeeecHHHHHHHHHc
Q 039151          225 ASETLKLKPDGVLFSNGPGDPS-------------AVPYAVAIVKELL-GKVPVFGICMGHQLLGQAL  278 (279)
Q Consensus       225 ~~~i~~~~~DgIiLSgGPGdp~-------------~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~Al  278 (279)
                      ++++...+||+|||+||-|.+.             ..+...++++++. .++|+..||.|-|+|+.++
T Consensus        78 l~~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~  145 (217)
T PRK11780         78 LAEADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL  145 (217)
T ss_pred             hhHCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence            3344445799999999966321             1456888899888 7999999999999998875

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=97.71  E-value=0.00017  Score=64.91  Aligned_cols=54  Identities=22%  Similarity=0.383  Sum_probs=41.5

Q ss_pred             hhhhhccCCCeEEEcCCCCCCC-------------CChHHHHHHHHHH-CCCCEeeecHHHHHHHHHc
Q 039151          225 ASETLKLKPDGVLFSNGPGDPS-------------AVPYAVAIVKELL-GKVPVFGICMGHQLLGQAL  278 (279)
Q Consensus       225 ~~~i~~~~~DgIiLSgGPGdp~-------------~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~Al  278 (279)
                      ++++...+||+|||+||.+.+.             ..+..+++++++. .++|+.+||.|-++|+.+.
T Consensus        75 l~ev~~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~  142 (213)
T cd03133          75 LAKLKAADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKIL  142 (213)
T ss_pred             hHHCCHhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHh
Confidence            3444334799999999965321             2356788899888 7999999999999999876

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=97.67  E-value=0.00012  Score=65.31  Aligned_cols=81  Identities=16%  Similarity=0.098  Sum_probs=56.5

Q ss_pred             cEEEEEEcCc------hHHHHHHHHHC-CCeEEEEcCCC--C-hhhhhccCCCeEEEcCCCCCCCCCh------HHHHHH
Q 039151          192 YRVIAYDFGI------KHNILRRLASY-GCQIIVVPSTW--P-ASETLKLKPDGVLFSNGPGDPSAVP------YAVAIV  255 (279)
Q Consensus       192 ~~I~viD~G~------k~~I~r~L~~~-G~~v~vvp~~~--~-~~~i~~~~~DgIiLSgGPGdp~~~~------~~i~~I  255 (279)
                      .+|++|-...      ..++.+.+.+. |++++.+....  . .+.+  .++|+|+++|  ||....-      ...+.+
T Consensus        32 ~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l--~~ad~I~l~G--G~~~~~~~~l~~~~l~~~l  107 (212)
T cd03146          32 PKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDAL--LEADVIYVGG--GNTFNLLAQWREHGLDAIL  107 (212)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHH--hcCCEEEECC--chHHHHHHHHHHcCHHHHH
Confidence            4677776532      45677888999 99998875321  1 2333  3799999976  5654321      234557


Q ss_pred             HHHH-CCCCEeeecHHHHHHHH
Q 039151          256 KELL-GKVPVFGICMGHQLLGQ  276 (279)
Q Consensus       256 r~~~-~~~PILGICLGhQLLa~  276 (279)
                      +++. +++|++|||.|+|+++.
T Consensus       108 ~~~~~~g~~i~G~SAGa~i~~~  129 (212)
T cd03146         108 KAALERGVVYIGWSAGSNCWFP  129 (212)
T ss_pred             HHHHHCCCEEEEECHhHHhhCC
Confidence            7666 68999999999999975

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=97.64  E-value=0.00039  Score=58.56  Aligned_cols=74  Identities=26%  Similarity=0.321  Sum_probs=52.2

Q ss_pred             HHHHHHHHCCCeEEEEcCC-C----------------ChhhhhccCCCeEEEcCCCCCC--CCChHHHHHHHHHH-CCCC
Q 039151          204 NILRRLASYGCQIIVVPST-W----------------PASETLKLKPDGVLFSNGPGDP--SAVPYAVAIVKELL-GKVP  263 (279)
Q Consensus       204 ~I~r~L~~~G~~v~vvp~~-~----------------~~~~i~~~~~DgIiLSgGPGdp--~~~~~~i~~Ir~~~-~~~P  263 (279)
                      .+.+.|+..|++++++..+ .                +.++....++|+|++.||++..  ...+..+++|+++. .++|
T Consensus        17 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~   96 (165)
T cd03134          17 YPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKP   96 (165)
T ss_pred             HHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCe
Confidence            3456677778888877433 1                1222222368999999998422  23356788898888 7999


Q ss_pred             EeeecHHHHHHHHH
Q 039151          264 VFGICMGHQLLGQA  277 (279)
Q Consensus       264 ILGICLGhQLLa~A  277 (279)
                      +.+||-|.++|+.+
T Consensus        97 i~~ic~G~~~La~a  110 (165)
T cd03134          97 VAAICHGPWVLISA  110 (165)
T ss_pred             EEEEchHHHHHHhc
Confidence            99999999999875

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=97.58  E-value=0.00032  Score=63.70  Aligned_cols=53  Identities=17%  Similarity=0.203  Sum_probs=41.7

Q ss_pred             hhhhhccCCCeEEEcCCCCCC---CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          225 ASETLKLKPDGVLFSNGPGDP---SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       225 ~~~i~~~~~DgIiLSgGPGdp---~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      ++++...+||+|||.||.|..   .+.+...+.++++. .++||..||.|-++|+.+
T Consensus        87 l~dv~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a  143 (231)
T cd03147          87 ADEVNPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL  143 (231)
T ss_pred             hhHCCHhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence            344444589999999997642   33456788899888 699999999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=97.57  E-value=0.00035  Score=76.97  Aligned_cols=87  Identities=16%  Similarity=0.158  Sum_probs=63.8

Q ss_pred             CCccEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCCC---ChhhhhccCCCeEEEcCCC--CCCCCC-----------h
Q 039151          189 SKTYRVIAYDF-GI--KHNILRRLASYGCQIIVVPSTW---PASETLKLKPDGVLFSNGP--GDPSAV-----------P  249 (279)
Q Consensus       189 ~~~~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~~---~~~~i~~~~~DgIiLSgGP--Gdp~~~-----------~  249 (279)
                      ..++||+|+-| |.  .....++|...|+++..+..+.   ....+  .++++|+++||-  ||.-..           .
T Consensus      1035 ~~~pkVaVl~~pGtN~~~e~~~Af~~aGf~~~~V~~~dl~~~~~~L--~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~ 1112 (1307)
T PLN03206       1035 TSKPKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGRISL--DDFRGIVFVGGFSYADVLDSAKGWAGSIRFNE 1112 (1307)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeeecccccccc--cceeEEEEcCcCCCccccchHHHHHHHHHhCh
Confidence            34689999998 65  5778999999999987775431   11122  479999999996  554322           2


Q ss_pred             HHHHHHHHHH-C-CCCEeeecHHHHHHHHH
Q 039151          250 YAVAIVKELL-G-KVPVFGICMGHQLLGQA  277 (279)
Q Consensus       250 ~~i~~Ir~~~-~-~~PILGICLGhQLLa~A  277 (279)
                      ...+.+++++ + +.++||||.|+|+|...
T Consensus      1113 ~~~~~~~~f~~~~d~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206       1113 PLLQQFQEFYNRPDTFSLGVCNGCQLMALL 1142 (1307)
T ss_pred             HHHHHHHHHHhCCCceEEEEcHHHHHHHHc
Confidence            3456677777 4 89999999999999873

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=97.54  E-value=0.00055  Score=67.70  Aligned_cols=85  Identities=18%  Similarity=0.219  Sum_probs=58.3

Q ss_pred             ccEEEEEEcC---c-hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCC-CCC----CCChHHHHHHHHHH-C
Q 039151          191 TYRVIAYDFG---I-KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGP-GDP----SAVPYAVAIVKELL-G  260 (279)
Q Consensus       191 ~~~I~viD~G---~-k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGP-Gdp----~~~~~~i~~Ir~~~-~  260 (279)
                      +.+|+|+-.-   + ...=++.|++.|+++..++.-. .+++.  ++|+|+|.||. ...    .......+.|+++. .
T Consensus       245 ~~~iava~d~af~f~y~e~~~~L~~~g~~~~~~~~~~-~~~l~--~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~  321 (451)
T PRK01077        245 GVRIAVARDAAFNFYYPENLELLRAAGAELVFFSPLA-DEALP--DCDGLYLGGGYPELFAAELAANTSMRASIRAAAAA  321 (451)
T ss_pred             CceEEEEecCcccccHHHHHHHHHHCCCEEEEeCCcC-CCCCC--CCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHc
Confidence            3688887542   2 1223577888999988875321 12332  78999999885 211    11234578888888 6


Q ss_pred             CCCEeeecHHHHHHHHHc
Q 039151          261 KVPVFGICMGHQLLGQAL  278 (279)
Q Consensus       261 ~~PILGICLGhQLLa~Al  278 (279)
                      ++|++|||-|+|+|+..+
T Consensus       322 g~~i~aiCgG~~~L~~~i  339 (451)
T PRK01077        322 GKPIYAECGGLMYLGESL  339 (451)
T ss_pred             CCCEEEEcHHHHHHHhhh
Confidence            899999999999999864

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=97.53  E-value=0.00058  Score=56.32  Aligned_cols=85  Identities=21%  Similarity=0.235  Sum_probs=59.4

Q ss_pred             EEEEEEc-Cc----hHHHHHHHHHCCCeEEEEcCCC---------------ChhhhhccCCCeEEEcCCCCCC---CCCh
Q 039151          193 RVIAYDF-GI----KHNILRRLASYGCQIIVVPSTW---------------PASETLKLKPDGVLFSNGPGDP---SAVP  249 (279)
Q Consensus       193 ~I~viD~-G~----k~~I~r~L~~~G~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgGPGdp---~~~~  249 (279)
                      ||+++=+ |+    -..+.+.|+..|+++.++..+-               ++++....++|.|++.||++..   ...+
T Consensus         3 ~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~~~   82 (142)
T cd03132           3 KVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPSG   82 (142)
T ss_pred             EEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHccCh
Confidence            5555544 44    2346677888899998875321               1122222358999999987643   2346


Q ss_pred             HHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          250 YAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       250 ~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      ..+++++++. .++|+.+||-|-.+|+.|
T Consensus        83 ~l~~~l~~~~~~~~~I~aic~G~~~La~a  111 (142)
T cd03132          83 RALHFVTEAFKHGKPIGAVGEGSDLLEAA  111 (142)
T ss_pred             HHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence            6888999888 699999999999999975

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS)

Probab=97.52  E-value=0.0001  Score=64.45  Aligned_cols=54  Identities=13%  Similarity=0.151  Sum_probs=36.2

Q ss_pred             hhhhccCCCeEEEcCCCCCC---CCChH--HHHHHHHHH--CCCCEeeecHHHHHHHHHcC
Q 039151          226 SETLKLKPDGVLFSNGPGDP---SAVPY--AVAIVKELL--GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       226 ~~i~~~~~DgIiLSgGPGdp---~~~~~--~i~~Ir~~~--~~~PILGICLGhQLLa~AlG  279 (279)
                      +++...++||+||+|.|=.-   .+..+  ++..+-++.  ...|+||||.|+|....++|
T Consensus        56 ~~i~~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~y  116 (175)
T cd03131          56 DDIRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFY  116 (175)
T ss_pred             HHccccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc
Confidence            34555689999999988632   22222  233333333  47899999999999887764

Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=97.46  E-value=0.00053  Score=75.76  Aligned_cols=86  Identities=17%  Similarity=0.239  Sum_probs=62.6

Q ss_pred             CccEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCC-CCh--hhhhccCCCeEEEcCC--CCCCCCC-----------hH
Q 039151          190 KTYRVIAYDF-GI--KHNILRRLASYGCQIIVVPST-WPA--SETLKLKPDGVLFSNG--PGDPSAV-----------PY  250 (279)
Q Consensus       190 ~~~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~-~~~--~~i~~~~~DgIiLSgG--PGdp~~~-----------~~  250 (279)
                      .++||+|+-| |.  .....++|...|+++..+..+ ...  ..+  .++++|+++||  -||.-..           +.
T Consensus      1034 ~~pkv~il~~pG~N~~~e~~~Af~~aG~~~~~v~~~dl~~~~~~l--~~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~ 1111 (1290)
T PRK05297       1034 ARPKVAILREQGVNSHVEMAAAFDRAGFDAIDVHMSDLLAGRVTL--EDFKGLVACGGFSYGDVLGAGEGWAKSILFNPR 1111 (1290)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeecCcCCCCCh--hhCcEEEECCccCCcccchHHHHHHHHhhccHH
Confidence            4579999998 65  577899999999998777542 111  123  47999999998  4553211           23


Q ss_pred             HHHHHHHHH--CCCCEeeecHHHHHHHHH
Q 039151          251 AVAIVKELL--GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       251 ~i~~Ir~~~--~~~PILGICLGhQLLa~A  277 (279)
                      ..+.+++++  .+.++||||.|+|+|...
T Consensus      1112 ~~~~~~~f~~~~d~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297       1112 LRDQFEAFFARPDTFALGVCNGCQMMSNL 1140 (1290)
T ss_pred             HHHHHHHHHhCCCceEEEEcHHHHHHHHh
Confidence            456677766  489999999999999874

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=97.45  E-value=0.00064  Score=74.49  Aligned_cols=88  Identities=20%  Similarity=0.299  Sum_probs=62.7

Q ss_pred             CccEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCCC-C-------hhhhh--ccCCCeEEEcCCC--CCCC-CC-----
Q 039151          190 KTYRVIAYDF-GI--KHNILRRLASYGCQIIVVPSTW-P-------ASETL--KLKPDGVLFSNGP--GDPS-AV-----  248 (279)
Q Consensus       190 ~~~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~~-~-------~~~i~--~~~~DgIiLSgGP--Gdp~-~~-----  248 (279)
                      .++||+|+-| |.  .....++|.+.|+++..+..+. .       .+++.  -.++++|+++||-  ||.- ..     
T Consensus       976 ~kpkvaIl~~pGtNce~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~~~~~~~a 1055 (1239)
T TIGR01857       976 EKPRVVIPVFPGTNSEYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPDGSAKFIA 1055 (1239)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccchhHHHHH
Confidence            4689999998 65  5778899999999988775421 1       11110  1479999999985  4432 11     


Q ss_pred             -----hHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          249 -----PYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       249 -----~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                           ....+.+++++ .+.|+||||.|+|+|...
T Consensus      1056 a~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~l 1090 (1239)
T TIGR01857      1056 AILRNPKVRVAIDSFLARDGLILGICNGFQALVKS 1090 (1239)
T ss_pred             HHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHc
Confidence                 23556677777 689999999999999863

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=97.43  E-value=0.00056  Score=75.59  Aligned_cols=87  Identities=17%  Similarity=0.206  Sum_probs=61.7

Q ss_pred             CccEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCC--CCCCCC-----------hHHH
Q 039151          190 KTYRVIAYDF-GI--KHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGP--GDPSAV-----------PYAV  252 (279)
Q Consensus       190 ~~~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGP--Gdp~~~-----------~~~i  252 (279)
                      .++||+|+-| |.  .....++|...|+++..+... .......-.++++|+++||-  ||.-..           ....
T Consensus      1054 ~~p~vail~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~ 1133 (1310)
T TIGR01735      1054 VRPKVAILREQGVNGDREMAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPRLR 1133 (1310)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchhHHHHHHHHHHhChHHH
Confidence            4579999998 65  567889999999998877643 11111111368999999994  443211           2345


Q ss_pred             HHHHHHH--CCCCEeeecHHHHHHHH
Q 039151          253 AIVKELL--GKVPVFGICMGHQLLGQ  276 (279)
Q Consensus       253 ~~Ir~~~--~~~PILGICLGhQLLa~  276 (279)
                      +.+++++  .+.++||||.|+|+|..
T Consensus      1134 ~~~~~f~~~~d~~~LGiCNGfQ~L~~ 1159 (1310)
T TIGR01735      1134 DQFQAFFKRPDTFSLGVCNGCQMLSN 1159 (1310)
T ss_pred             HHHHHHHhCCCceEEEecHHHHHHHH
Confidence            6677777  48999999999999983

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=97.43  E-value=0.00024  Score=59.83  Aligned_cols=53  Identities=32%  Similarity=0.432  Sum_probs=40.8

Q ss_pred             ChhhhhccCCCeEEEcCCCCCCC---CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          224 PASETLKLKPDGVLFSNGPGDPS---AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       224 ~~~~i~~~~~DgIiLSgGPGdp~---~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      +++++...++|+||+.||++ +.   ..+...+.++++. .++|+.+||.|.++|+.+
T Consensus        52 ~~~~~~~~~~D~vvv~Gg~~-~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a  108 (166)
T TIGR01382        52 TIDEVNPEEYDALVIPGGRA-PEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISA  108 (166)
T ss_pred             ChhhCCHHHCcEEEECCCCC-HHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhc
Confidence            34444333689999999976 32   2356788899888 689999999999999975

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=97.41  E-value=0.00022  Score=70.00  Aligned_cols=45  Identities=36%  Similarity=0.559  Sum_probs=36.1

Q ss_pred             CCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          232 KPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      ..|||+++||-|+-- ....+..++.+- .++|.||||||||+-...
T Consensus       363 ~adGilvPGGFG~RG-veG~i~Aak~ARen~iP~LGiCLGmQ~AvIE  408 (585)
T KOG2387|consen  363 SADGILVPGGFGDRG-VEGKILAAKWARENKIPFLGICLGMQLAVIE  408 (585)
T ss_pred             cCCeEEeCCcccccc-hhHHHHHHHHHHhcCCCeEeeehhhhHHHHH
Confidence            589999999998755 345667777776 699999999999986543

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=97.16  E-value=0.0016  Score=58.32  Aligned_cols=53  Identities=19%  Similarity=0.254  Sum_probs=41.7

Q ss_pred             hhhhhccCCCeEEEcCCCCCCC---CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          225 ASETLKLKPDGVLFSNGPGDPS---AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       225 ~~~i~~~~~DgIiLSgGPGdp~---~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      ++++...++|+|+|.||++...   +.+...++|+++. .++++.+||-|-++|+.|
T Consensus        83 ~~~~~~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a  139 (221)
T cd03141          83 LSDVDPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV  139 (221)
T ss_pred             hhHCCHhHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence            3444334799999999986432   3467889999888 799999999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=97.16  E-value=0.0016  Score=59.13  Aligned_cols=47  Identities=17%  Similarity=0.178  Sum_probs=38.0

Q ss_pred             cCCCeEEEcCCCCCCC---CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          231 LKPDGVLFSNGPGDPS---AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       231 ~~~DgIiLSgGPGdp~---~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      .+||+|||+||.|...   +.+...+.++++. .++|+..||.|-++|..+
T Consensus        95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a  145 (232)
T cd03148          95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA  145 (232)
T ss_pred             hhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence            4799999999976443   3456788889888 799999999999987654

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=97.16  E-value=0.00068  Score=67.09  Aligned_cols=84  Identities=20%  Similarity=0.276  Sum_probs=56.4

Q ss_pred             ccEEEEEEc---Cc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCC-----ChHHHHHHHHHH-
Q 039151          191 TYRVIAYDF---GI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA-----VPYAVAIVKELL-  259 (279)
Q Consensus       191 ~~~I~viD~---G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~-----~~~~i~~Ir~~~-  259 (279)
                      +.+|+++-.   .+  ..+ ++.|+++|+++..+..-.+ +++.  ++|+|+|.||--.-.+     .....+.|+++. 
T Consensus       244 ~~~Iava~d~afnFy~~~~-~~~L~~~g~~~~~~~~~~d-~~l~--~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~  319 (449)
T TIGR00379       244 YVRIAVAQDQAFNFYYQDN-LDALTHNAAELVPFSPLED-TELP--DVDAVYIGGGFPELFAEELSQNQALRDSIKTFIH  319 (449)
T ss_pred             CcEEEEEechhhceeHHHH-HHHHHHCCCEEEEECCccC-CCCC--CCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            368887753   22  234 4678889998887754211 2332  7899999887621111     122457788887 


Q ss_pred             CCCCEeeecHHHHHHHHHc
Q 039151          260 GKVPVFGICMGHQLLGQAL  278 (279)
Q Consensus       260 ~~~PILGICLGhQLLa~Al  278 (279)
                      .+.|++|||-|+|+|++.+
T Consensus       320 ~G~pv~g~CgG~~~L~~~i  338 (449)
T TIGR00379       320 QGLPIYGECGGLMYLSQSL  338 (449)
T ss_pred             cCCCEEEEcHHHHHHHhhh
Confidence            6899999999999999764

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=97.16  E-value=0.0056  Score=53.22  Aligned_cols=72  Identities=17%  Similarity=0.185  Sum_probs=48.4

Q ss_pred             HHHHHHHCCCeEEEEcCC------------------CChhhhhccCCCeEEEcCCCCCCC---CChHHHHHHHHHH-CCC
Q 039151          205 ILRRLASYGCQIIVVPST------------------WPASETLKLKPDGVLFSNGPGDPS---AVPYAVAIVKELL-GKV  262 (279)
Q Consensus       205 I~r~L~~~G~~v~vvp~~------------------~~~~~i~~~~~DgIiLSgGPGdp~---~~~~~i~~Ir~~~-~~~  262 (279)
                      ..+.|++.|+++.++...                  .+++++...++|.|+|.||++.+.   +.+..+++++++. +++
T Consensus        21 p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~  100 (196)
T PRK11574         21 TIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGR  100 (196)
T ss_pred             HHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCC
Confidence            445666677777764321                  122232223699999998875433   2346788899888 799


Q ss_pred             CEeeecHHHHHHHH
Q 039151          263 PVFGICMGHQLLGQ  276 (279)
Q Consensus       263 PILGICLGhQLLa~  276 (279)
                      ++.+||-|..+|+.
T Consensus       101 ~v~aic~G~~~ll~  114 (196)
T PRK11574        101 IVAAICAAPATVLV  114 (196)
T ss_pred             EEEEECHhHHHHHH
Confidence            99999999997543

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=97.14  E-value=0.00024  Score=59.25  Aligned_cols=56  Identities=21%  Similarity=0.349  Sum_probs=43.4

Q ss_pred             CCChhhhhccCCCeEEEcCCCCCC---C-CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          222 TWPASETLKLKPDGVLFSNGPGDP---S-AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       222 ~~~~~~i~~~~~DgIiLSgGPGdp---~-~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      +.+++++...+||+|||+||++.+   . +.+...++++++. .++||.+||.|-.+|+.+
T Consensus        27 d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~   87 (147)
T PF01965_consen   27 DKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA   87 (147)
T ss_dssp             SEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred             CCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence            445677766689999999998843   2 3367889999998 799999999999998875

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=97.07  E-value=0.00032  Score=69.95  Aligned_cols=82  Identities=17%  Similarity=0.154  Sum_probs=50.6

Q ss_pred             ccEEEEEEcCchHH--HHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh-----HHHHHHHHHH-CCC
Q 039151          191 TYRVIAYDFGIKHN--ILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP-----YAVAIVKELL-GKV  262 (279)
Q Consensus       191 ~~~I~viD~G~k~~--I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~-----~~i~~Ir~~~-~~~  262 (279)
                      +.+|+|+.+---.|  =++.|+.. -.+...|   ..+++.  ++|+|+|.||.-...+..     ...+.|+++. .+.
T Consensus       247 ~~~Iav~~~~~~~nf~~~~~L~~~-~~~~f~~---~~~~l~--~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~  320 (475)
T TIGR00313       247 SIRIGVVRLPRISNFTDFEPLRYE-AFVKFLD---LDDSLT--GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGG  320 (475)
T ss_pred             CcEEEEEcCCcccCccChHHHhhC-CCeEEeC---Cccccc--cCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCC
Confidence            37899998432111  24566655 1333333   233443  789999977752111111     2356777777 689


Q ss_pred             CEeeecHHHHHHHHHc
Q 039151          263 PVFGICMGHQLLGQAL  278 (279)
Q Consensus       263 PILGICLGhQLLa~Al  278 (279)
                      |++|||-|+|+|+..+
T Consensus       321 pvlgiCgG~q~Lg~~i  336 (475)
T TIGR00313       321 IVIGICGGYQMLGKEL  336 (475)
T ss_pred             cEEEEcHHHHHhhhhh
Confidence            9999999999999853

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=97.06  E-value=0.0003  Score=57.49  Aligned_cols=42  Identities=17%  Similarity=0.254  Sum_probs=29.2

Q ss_pred             cCCCeEEEcCCCCCCCCC---hHHHHHHHHHH-CCCCEeeecHHHH
Q 039151          231 LKPDGVLFSNGPGDPSAV---PYAVAIVKELL-GKVPVFGICMGHQ  272 (279)
Q Consensus       231 ~~~DgIiLSgGPGdp~~~---~~~i~~Ir~~~-~~~PILGICLGhQ  272 (279)
                      .++|.||++||..++...   ..-.+.|++++ .++|+||||+|.-
T Consensus        43 ~~ad~lVlPGGa~~~~~~~L~~~g~~~i~~~v~~g~p~LGIClGAy   88 (114)
T cd03144          43 SKTALLVVPGGADLPYCRALNGKGNRRIRNFVRNGGNYLGICAGAY   88 (114)
T ss_pred             hCCCEEEECCCChHHHHHHHHhhCcHHHHHHHHCCCcEEEEecCcc
Confidence            478999997644333211   11267788877 6899999999964

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=96.99  E-value=0.0015  Score=54.49  Aligned_cols=54  Identities=17%  Similarity=0.214  Sum_probs=41.8

Q ss_pred             ChhhhhccCCCeEEEcCCCCCC---CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          224 PASETLKLKPDGVLFSNGPGDP---SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       224 ~~~~i~~~~~DgIiLSgGPGdp---~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      ++++....++|.|||.||++.+   .+.+..+++++++. +++++.+||-|..+|+.|
T Consensus        52 ~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~a  109 (163)
T cd03135          52 TLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKA  109 (163)
T ss_pred             CHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHHc
Confidence            3444433479999999988433   23467888999888 789999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>PRK04155 chaperone protein HchA; Provisional

Probab=96.98  E-value=0.0026  Score=59.73  Aligned_cols=47  Identities=19%  Similarity=0.195  Sum_probs=38.3

Q ss_pred             cCCCeEEEcCCCCCCCC---ChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          231 LKPDGVLFSNGPGDPSA---VPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       231 ~~~DgIiLSgGPGdp~~---~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      .+||+|||+||.|...+   .+...++++++. .++||..||.|-++|..+
T Consensus       146 ~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a  196 (287)
T PRK04155        146 SDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAA  196 (287)
T ss_pred             ccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence            58999999999875432   456788899888 799999999999977653

>PHA03366 FGAM-synthase; Provisional

Probab=96.97  E-value=0.0045  Score=68.67  Aligned_cols=87  Identities=21%  Similarity=0.222  Sum_probs=63.6

Q ss_pred             CCccEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCC--CCCCC-----------hHH
Q 039151          189 SKTYRVIAYDF-GI--KHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPG--DPSAV-----------PYA  251 (279)
Q Consensus       189 ~~~~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPG--dp~~~-----------~~~  251 (279)
                      ..++||+|+-+ |.  ...+.++|.+.|+++..|... .....++ .+++||++.||-.  |.-..           +..
T Consensus      1026 ~~~prVaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dL~~~~~l-~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~~ 1104 (1304)
T PHA03366       1026 DKRHRVAVLLLPGCPGPHALLAAFTNAGFDPYPVSIEELKDGTFL-DEFSGLVIGGSSGAEDSYTGARAAVAALLSNPAV 1104 (1304)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeecCCCCCcc-ccceEEEEcCCCCCcccccHHHHHHHHhhhchHH
Confidence            45689999998 76  577899999999998877642 2222222 4789999999864  43221           345


Q ss_pred             HHHHHHHH--CCCCEeeecH-HHHHHHH
Q 039151          252 VAIVKELL--GKVPVFGICM-GHQLLGQ  276 (279)
Q Consensus       252 i~~Ir~~~--~~~PILGICL-GhQLLa~  276 (279)
                      .+.+++++  .+.++||||- |+|+|+.
T Consensus      1105 ~~~~~~f~~r~dt~~LGiCN~G~Q~L~~ 1132 (1304)
T PHA03366       1105 RDALLRFLNRPDTFSLGCGELGCQILFA 1132 (1304)
T ss_pred             HHHHHHHHhCCCCeEEEeCcHHHHHHHH
Confidence            56777788  4899999997 9999986

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=96.92  E-value=0.0021  Score=54.86  Aligned_cols=54  Identities=22%  Similarity=0.322  Sum_probs=41.0

Q ss_pred             ChhhhhccCCCeEEEcCCCC-CCCCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          224 PASETLKLKPDGVLFSNGPG-DPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       224 ~~~~i~~~~~DgIiLSgGPG-dp~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      +.+++...++|.|||.||+. +....+...++||++. .++++.+||-|.++|+.|
T Consensus        52 ~~~~~~~~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  107 (170)
T cd03140          52 SLDDLPPEDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAAICGATLALARA  107 (170)
T ss_pred             chhHCCHhHccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence            34444223689999999975 2233456788899888 789999999999999985

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=96.91  E-value=0.00082  Score=57.19  Aligned_cols=48  Identities=23%  Similarity=0.409  Sum_probs=35.5

Q ss_pred             cCCCeEEEcCCCCCCCCC-----hHHHHHHHHHH-CCCCEeeecHHHHHHHHHc
Q 039151          231 LKPDGVLFSNGPGDPSAV-----PYAVAIVKELL-GKVPVFGICMGHQLLGQAL  278 (279)
Q Consensus       231 ~~~DgIiLSgGPGdp~~~-----~~~i~~Ir~~~-~~~PILGICLGhQLLa~Al  278 (279)
                      .++|+|+|.||.-.-.+.     ....+.|+++. .+.||+|||=|+|+|+..+
T Consensus         6 ~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i   59 (158)
T PF07685_consen    6 PDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESI   59 (158)
T ss_pred             CCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHH
Confidence            379999997665221211     23557788888 6899999999999999864

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=96.88  E-value=0.0033  Score=55.42  Aligned_cols=80  Identities=21%  Similarity=0.401  Sum_probs=55.6

Q ss_pred             cEEEEEEc-CchHHHHHHHHHCC-CeEEEEcCCCChhhhhccCCCeEEEcCCCCCCC----CChHHHHHHHHHH-CCCCE
Q 039151          192 YRVIAYDF-GIKHNILRRLASYG-CQIIVVPSTWPASETLKLKPDGVLFSNGPGDPS----AVPYAVAIVKELL-GKVPV  264 (279)
Q Consensus       192 ~~I~viD~-G~k~~I~r~L~~~G-~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~----~~~~~i~~Ir~~~-~~~PI  264 (279)
                      ++|-|+-+ |.-..=++.|++.+ .++..+..   ++++.  ..||+||+||-..--    ......+.+++.. .++|+
T Consensus         1 m~IGVLalQG~v~EH~~~l~~~~~~e~~~Vk~---~~dL~--~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv   75 (194)
T COG0311           1 MKIGVLALQGAVEEHLEALEKAGGAEVVEVKR---PEDLE--GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPV   75 (194)
T ss_pred             CeEEEEEecccHHHHHHHHHhhcCCceEEEcC---HHHhc--cCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCce
Confidence            35666666 65545567788884 77776653   45663  689999988753210    0123567788777 79999


Q ss_pred             eeecHHHHHHHH
Q 039151          265 FGICMGHQLLGQ  276 (279)
Q Consensus       265 LGICLGhQLLa~  276 (279)
                      ||-|-|+-+||.
T Consensus        76 ~GTCAGlIlLak   87 (194)
T COG0311          76 FGTCAGLILLAK   87 (194)
T ss_pred             EEechhhhhhhh
Confidence            999999999985

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=96.86  E-value=0.0054  Score=67.59  Aligned_cols=86  Identities=21%  Similarity=0.225  Sum_probs=62.2

Q ss_pred             CccEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCC--CCCCC-----------hHHH
Q 039151          190 KTYRVIAYDF-GI--KHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPG--DPSAV-----------PYAV  252 (279)
Q Consensus       190 ~~~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPG--dp~~~-----------~~~i  252 (279)
                      .++||+|+-+ |.  .....++|.+.|+++..|... ......+ .+++||++.||-+  |+...           ....
T Consensus       928 ~~p~VaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~l-~~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~ 1006 (1202)
T TIGR01739       928 PRHQVAVLLLPGQSVPHGLLAALTNAGFDPRIVSITELKKTDFL-DTFSGLIIGGASGTLDSEVGARALAAALLRNQAFL 1006 (1202)
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHcCCceEEEEeccCCCCCch-hheEEEEEcCcCCCCccchHHHHHHHHhhcchHHH
Confidence            4578999998 76  577899999999998887643 1111222 3789999988764  44322           2345


Q ss_pred             HHHHHHH-C-CCCEeeecH-HHHHHHH
Q 039151          253 AIVKELL-G-KVPVFGICM-GHQLLGQ  276 (279)
Q Consensus       253 ~~Ir~~~-~-~~PILGICL-GhQLLa~  276 (279)
                      +.+++++ + +.++||||- |+|+|+.
T Consensus      1007 ~~~~~f~~r~dtf~LGiCN~G~Q~L~~ 1033 (1202)
T TIGR01739      1007 RDLLTFLNRPDTFSLGFGELGCQLLLA 1033 (1202)
T ss_pred             HHHHHHHhCCCceEEEeCcHHHHHHHH
Confidence            6677777 3 899999997 9999986

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=96.72  E-value=0.0015  Score=57.64  Aligned_cols=66  Identities=23%  Similarity=0.436  Sum_probs=44.9

Q ss_pred             HHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCC----CChHHHHHHHHHH-CC-CCEeeecHHHHHHHH
Q 039151          206 LRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPS----AVPYAVAIVKELL-GK-VPVFGICMGHQLLGQ  276 (279)
Q Consensus       206 ~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~----~~~~~i~~Ir~~~-~~-~PILGICLGhQLLa~  276 (279)
                      .+.|++.|++...|..   .+++.  ++||+||+||--..-    ......+.||++. .+ +|+||.|-|+-|||.
T Consensus        12 ~~~l~~lg~~~~~Vr~---~~dL~--~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~   83 (188)
T PF01174_consen   12 IRMLERLGAEVVEVRT---PEDLE--GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAK   83 (188)
T ss_dssp             HHHHHHTTSEEEEE-S---GGGGT--T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEE
T ss_pred             HHHHHHcCCCeEEeCC---HHHHc--cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhh
Confidence            5678899999987764   45663  689999987752210    0124667888888 55 999999999999975

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=96.59  E-value=0.0045  Score=61.28  Aligned_cols=80  Identities=23%  Similarity=0.351  Sum_probs=53.0

Q ss_pred             cEEEEE-E--cCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh------HHHHHHHHHH-
Q 039151          192 YRVIAY-D--FGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP------YAVAIVKELL-  259 (279)
Q Consensus       192 ~~I~vi-D--~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~------~~i~~Ir~~~-  259 (279)
                      .||+|- |  |.+  ..| ++.|++. +++.-+..- ..+++.  ++|+|+|.||-  |....      ...+.|+++. 
T Consensus       234 ~~iavA~D~AF~FyY~en-l~~L~~~-aelv~fSPl-~~~~lp--~~D~l~lpGG~--~e~~~~~L~~n~~~~~i~~~~~  306 (433)
T PRK13896        234 PTVAVARDAAFCFRYPAT-IERLRER-ADVVTFSPV-AGDPLP--DCDGVYLPGGY--PELHADALADSPALDELADRAA  306 (433)
T ss_pred             CeEEEEEcCccceeCHHH-HHHHHhc-CcEEEEcCC-CCCCCC--CCCEEEeCCCc--hhhHHHHHHhCCcHHHHHHHHH
Confidence            578765 3  443  445 5788887 766655331 122343  68999998776  33211      1236777777 


Q ss_pred             CCCCEeeecHHHHHHHHHc
Q 039151          260 GKVPVFGICMGHQLLGQAL  278 (279)
Q Consensus       260 ~~~PILGICLGhQLLa~Al  278 (279)
                      .+.|++|||-|+|+|++.+
T Consensus       307 ~G~pi~aeCGG~q~L~~~i  325 (433)
T PRK13896        307 DGLPVLGECGGLMALAESL  325 (433)
T ss_pred             CCCcEEEEehHHHHhhccc
Confidence            6899999999999998754

>TIGR01383 not_thiJ DJ-1 family protein

Probab=96.51  E-value=0.0046  Score=52.56  Aligned_cols=54  Identities=17%  Similarity=0.147  Sum_probs=41.0

Q ss_pred             ChhhhhccCCCeEEEcCCCCCC---CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          224 PASETLKLKPDGVLFSNGPGDP---SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       224 ~~~~i~~~~~DgIiLSgGPGdp---~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      ++++....++|.|||.||+..+   .+.+..+++++++. +++|+.+||-|-.+|+.|
T Consensus        55 ~~~~~~~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a  112 (179)
T TIGR01383        55 SLEDVDLEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAA  112 (179)
T ss_pred             CHHHCCcccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence            4444333479999999886432   23456788999888 789999999999999976

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=96.45  E-value=0.0037  Score=53.90  Aligned_cols=47  Identities=28%  Similarity=0.487  Sum_probs=38.6

Q ss_pred             cCCCeEEEcCCCCCCCC---ChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          231 LKPDGVLFSNGPGDPSA---VPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       231 ~~~DgIiLSgGPGdp~~---~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      .++|+|+++||...|..   .+..++++|++. .++||..||.|-++|+.+
T Consensus        65 ~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~a  115 (188)
T COG0693          65 ADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAA  115 (188)
T ss_pred             hHCCEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhcc
Confidence            47999999999444432   257889999998 799999999999999875

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=96.36  E-value=0.0084  Score=59.89  Aligned_cols=83  Identities=19%  Similarity=0.257  Sum_probs=53.2

Q ss_pred             CccEEEEEEcCc--hHHHHHHHHHC-CCeEEEEcCCCChhhhhccCCCeEEEcCCCCC-CCCChH-----HHHHHHHHH-
Q 039151          190 KTYRVIAYDFGI--KHNILRRLASY-GCQIIVVPSTWPASETLKLKPDGVLFSNGPGD-PSAVPY-----AVAIVKELL-  259 (279)
Q Consensus       190 ~~~~I~viD~G~--k~~I~r~L~~~-G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGd-p~~~~~-----~i~~Ir~~~-  259 (279)
                      ...+|+++.+-.  ...=+..|... +.++.+++...   ++.  +||.+||. |+.+ .++...     .-+.|.+.. 
T Consensus       250 ~~i~Iav~~lp~isNFtD~dpL~~~~~v~v~~v~~~~---~l~--~~dlvIlP-Gsk~t~~DL~~lr~~g~d~~i~~~~~  323 (486)
T COG1492         250 RAIRIAVIRLPRISNFTDFDPLRAEPDVRVRFVKPGS---DLR--DADLVILP-GSKNTIADLKILREGGMDEKILEYAR  323 (486)
T ss_pred             CceEEEEecCCCccccccchhhhcCCCeEEEEeccCC---CCC--CCCEEEeC-CCcccHHHHHHHHHcCHHHHHHHHHh
Confidence            346899988743  33344556554 88888887543   332  48999984 4443 233221     222444444 


Q ss_pred             CCCCEeeecHHHHHHHHHc
Q 039151          260 GKVPVFGICMGHQLLGQAL  278 (279)
Q Consensus       260 ~~~PILGICLGhQLLa~Al  278 (279)
                      .+.|++|||=|+|||...+
T Consensus       324 ~~~~viGICGG~QmLG~~i  342 (486)
T COG1492         324 KGGDVIGICGGYQMLGRRL  342 (486)
T ss_pred             CCCCEEEEcchHHhhhhhh
Confidence            5899999999999998753

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=96.33  E-value=0.01  Score=50.83  Aligned_cols=47  Identities=23%  Similarity=0.393  Sum_probs=39.3

Q ss_pred             cCCCeEEEcCCCCCC--CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          231 LKPDGVLFSNGPGDP--SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       231 ~~~DgIiLSgGPGdp--~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      .++|.||+.||++..  .+.+..++.|+++. +++++.+||-|-++|+.|
T Consensus        63 ~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a  112 (187)
T cd03137          63 AAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEA  112 (187)
T ss_pred             CCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence            378999999987643  34567889999888 689999999999999975

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PRK11249 katE hydroperoxidase II; Provisional

Probab=96.13  E-value=0.018  Score=60.54  Aligned_cols=87  Identities=16%  Similarity=0.099  Sum_probs=62.1

Q ss_pred             ccEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC---------------ChhhhhccCCCeEEEcCCCCCCC---C
Q 039151          191 TYRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW---------------PASETLKLKPDGVLFSNGPGDPS---A  247 (279)
Q Consensus       191 ~~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgGPGdp~---~  247 (279)
                      +++|+|+=+ |+.    ..+.+.|.+.|+.+.++....               ++++.....+|+|+|.||+..+.   .
T Consensus       597 gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~~  676 (752)
T PRK11249        597 GRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLAD  676 (752)
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHhh
Confidence            467776654 553    356778888999998874321               11111123699999999876543   2


Q ss_pred             ChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          248 VPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       248 ~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      ....+.+|+++. ..++|..||-|.+||+.|
T Consensus       677 d~~al~fL~eaykHgK~IAAiCaG~~LLaaA  707 (752)
T PRK11249        677 NGDARYYLLEAYKHLKPIALAGDARKLKAAL  707 (752)
T ss_pred             CHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence            456889999998 689999999999999865

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=96.10  E-value=0.014  Score=50.40  Aligned_cols=47  Identities=30%  Similarity=0.415  Sum_probs=38.2

Q ss_pred             cCCCeEEEcCCCCCCC-----CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          231 LKPDGVLFSNGPGDPS-----AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       231 ~~~DgIiLSgGPGdp~-----~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      .++|.|||+||++.+.     ..+..+++++++. .++++.+||-|..+|+.+
T Consensus        68 ~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  120 (195)
T cd03138          68 PAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA  120 (195)
T ss_pred             CCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence            3799999998876532     2456788888888 789999999999999875

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=95.90  E-value=0.0073  Score=54.72  Aligned_cols=69  Identities=25%  Similarity=0.309  Sum_probs=47.3

Q ss_pred             HHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCC------ChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          207 RRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA------VPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       207 r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~------~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      +..+.+|+.+++++.+.. +.+....+|-+++.||- |-+.      .....+.++.++ .++|+|.||-|.|+|.+.
T Consensus        28 ~ra~~rgi~v~i~~vsl~-d~~~~~~~Dl~~~GGgq-D~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~y  103 (250)
T COG3442          28 QRAEKRGIKVEIVEVSLT-DTFPDDSYDLYFLGGGQ-DYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQY  103 (250)
T ss_pred             HHHHhcCCceEEEEeecC-CCCCcccccEEEecCch-HHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccce
Confidence            457789999999886532 12222478999885554 3221      112345677777 699999999999999864

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=95.50  E-value=0.053  Score=49.52  Aligned_cols=48  Identities=25%  Similarity=0.317  Sum_probs=36.6

Q ss_pred             ccCCCeEEEcCC-CCCCC--CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          230 KLKPDGVLFSNG-PGDPS--AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       230 ~~~~DgIiLSgG-PGdp~--~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      ...||.|+|+|| ||.-.  +++...+.+|+.. .+++|..||.|--++..+
T Consensus        65 ~~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~al~a  116 (247)
T KOG2764|consen   65 DSKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTALAA  116 (247)
T ss_pred             cccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHHHhh
Confidence            368999999999 88643  3556778888877 699999999986444433

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=95.42  E-value=0.046  Score=49.90  Aligned_cols=83  Identities=12%  Similarity=0.240  Sum_probs=54.6

Q ss_pred             cEEEEEEcCc--------hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC------hHHHHHHHH
Q 039151          192 YRVIAYDFGI--------KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV------PYAVAIVKE  257 (279)
Q Consensus       192 ~~I~viD~G~--------k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~------~~~i~~Ir~  257 (279)
                      ++|++|-.-.        ..++.+.+.+.|++++.+....+..+.. .+.|+|+++||-  ....      ....+.|++
T Consensus        32 ~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l-~~ad~I~v~GGn--t~~l~~~l~~~gl~~~l~~  108 (233)
T PRK05282         32 RKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAI-ENAEAIFVGGGN--TFQLLKQLYERGLLAPIRE  108 (233)
T ss_pred             CeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHH-hcCCEEEECCcc--HHHHHHHHHHCCcHHHHHH
Confidence            4677776522        2346677888999988775432222212 379999998874  2211      124566777


Q ss_pred             HH-CCCCEeeecHHHHHHHHH
Q 039151          258 LL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       258 ~~-~~~PILGICLGhQLLa~A  277 (279)
                      ++ +++|+.|.|-|.-+++..
T Consensus       109 ~~~~G~~~~G~SAGAii~~~~  129 (233)
T PRK05282        109 AVKNGTPYIGWSAGANVAGPT  129 (233)
T ss_pred             HHHCCCEEEEECHHHHhhhcc
Confidence            77 689999999999887653

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=95.04  E-value=0.049  Score=46.30  Aligned_cols=46  Identities=24%  Similarity=0.343  Sum_probs=37.6

Q ss_pred             CCCeEEEcCCCCCC--CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          232 KPDGVLFSNGPGDP--SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       232 ~~DgIiLSgGPGdp--~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      .+|.|||.||++..  ...+..+++++++. +++|+.+||-|..+|+.+
T Consensus        62 ~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~a  110 (183)
T cd03139          62 DLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAA  110 (183)
T ss_pred             CCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence            69999999987532  23466888899888 689999999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]

Probab=95.04  E-value=0.062  Score=49.63  Aligned_cols=73  Identities=26%  Similarity=0.440  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHCCCeEEEEcCCCChhhhhc--cCCCeEEEcCCCCCCCCCh--HHHH-HHHHHH------CCCCEeeecHH
Q 039151          202 KHNILRRLASYGCQIIVVPSTWPASETLK--LKPDGVLFSNGPGDPSAVP--YAVA-IVKELL------GKVPVFGICMG  270 (279)
Q Consensus       202 k~~I~r~L~~~G~~v~vvp~~~~~~~i~~--~~~DgIiLSgGPGdp~~~~--~~i~-~Ir~~~------~~~PILGICLG  270 (279)
                      ..++++.++.-|++|.-+.++.+.+.+..  .-..||+++||  +.....  ...+ ...+.+      +..|+.|||||
T Consensus        79 AASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGG--wak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLG  156 (340)
T KOG1559|consen   79 AASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGG--WAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLG  156 (340)
T ss_pred             HHHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCc--ccccccHHHHHHHHHHHHHhccCCccccchhhhhhh
Confidence            46788888889999988888776444321  24789999988  333321  1222 122222      25799999999


Q ss_pred             HHHHHH
Q 039151          271 HQLLGQ  276 (279)
Q Consensus       271 hQLLa~  276 (279)
                      ..+|..
T Consensus       157 FE~lsm  162 (340)
T KOG1559|consen  157 FELLSM  162 (340)
T ss_pred             HHHHHH
Confidence            999875

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=94.66  E-value=0.16  Score=44.78  Aligned_cols=84  Identities=13%  Similarity=0.223  Sum_probs=56.0

Q ss_pred             ccEEEEEEcCc------hHHHHHHHHHCCCeEEEEcCCC--Chhhhhc--cCCCeEEEcCCCCCCCCC------hHHHHH
Q 039151          191 TYRVIAYDFGI------KHNILRRLASYGCQIIVVPSTW--PASETLK--LKPDGVLFSNGPGDPSAV------PYAVAI  254 (279)
Q Consensus       191 ~~~I~viD~G~------k~~I~r~L~~~G~~v~vvp~~~--~~~~i~~--~~~DgIiLSgGPGdp~~~------~~~i~~  254 (279)
                      ..+|++|....      -..+.+.+.+.|+++..++.-.  +.+++.+  .+.|+|+++|  ||+...      ....+.
T Consensus        29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~G--G~~~~~~~~l~~t~~~~~  106 (210)
T cd03129          29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGG--GNQLRLLSVLRETPLLDA  106 (210)
T ss_pred             CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcC--CcHHHHHHHHHhCChHHH
Confidence            35788887743      2456678888999988765421  1122211  4799999987  455432      124445


Q ss_pred             HHHHH-CCCCEeeecHHHHHHHH
Q 039151          255 VKELL-GKVPVFGICMGHQLLGQ  276 (279)
Q Consensus       255 Ir~~~-~~~PILGICLGhQLLa~  276 (279)
                      |++.+ ++.|+.|.|-|..+++.
T Consensus       107 i~~~~~~G~v~~G~SAGA~~~~~  129 (210)
T cd03129         107 ILKRVARGVVIGGTSAGAAVMGE  129 (210)
T ss_pred             HHHHHHcCCeEEEcCHHHHHhhh
Confidence            55555 68999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=94.42  E-value=0.06  Score=45.31  Aligned_cols=47  Identities=26%  Similarity=0.406  Sum_probs=37.2

Q ss_pred             cCCCeEEEcCCCC-C-CCCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          231 LKPDGVLFSNGPG-D-PSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       231 ~~~DgIiLSgGPG-d-p~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      ..+|.||++||++ . ....+..++.+++.. .+.++.+||-|..+|+.|
T Consensus        60 ~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  109 (166)
T PF13278_consen   60 PDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA  109 (166)
T ss_dssp             SCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred             ccCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence            4799999999998 1 223356788888888 689999999999999986

...

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=93.90  E-value=0.16  Score=47.58  Aligned_cols=47  Identities=15%  Similarity=0.208  Sum_probs=36.9

Q ss_pred             cCCCeEEEcCCCCCC-CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          231 LKPDGVLFSNGPGDP-SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       231 ~~~DgIiLSgGPGdp-~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      .++|.||++||++.. ...+..+++|++.. .+++|.+||-|.-+||.|
T Consensus        74 ~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a  122 (322)
T PRK09393         74 DRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAA  122 (322)
T ss_pred             CCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence            378999998876422 22456788898888 689999999999999875

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=93.80  E-value=0.15  Score=43.70  Aligned_cols=46  Identities=26%  Similarity=0.304  Sum_probs=37.6

Q ss_pred             CCCeEEEcCCCCCC-CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          232 KPDGVLFSNGPGDP-SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       232 ~~DgIiLSgGPGdp-~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      ++|.|||.||++.. ...+..+++|++.. +++.|.+||-|..+|+.+
T Consensus        64 ~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a  111 (185)
T cd03136          64 PLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLARA  111 (185)
T ss_pred             CCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence            68999998886533 33467889999888 689999999999999875

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>TIGR01001 metA homoserine O-succinyltransferase

Probab=91.28  E-value=0.27  Score=46.56  Aligned_cols=51  Identities=20%  Similarity=0.207  Sum_probs=33.6

Q ss_pred             ChhhhhccCCCeEEEcCCCCC---CCCChH---HHHHHHHHH-CCCCEeeecHHHHHH
Q 039151          224 PASETLKLKPDGVLFSNGPGD---PSAVPY---AVAIVKELL-GKVPVFGICMGHQLL  274 (279)
Q Consensus       224 ~~~~i~~~~~DgIiLSgGPGd---p~~~~~---~i~~Ir~~~-~~~PILGICLGhQLL  274 (279)
                      +++++...++||+||+|.|=.   ..+...   ..+.+...- .-...|.||.|.|.-
T Consensus        91 ~f~~ik~~~fDGlIITGAPvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAa  148 (300)
T TIGR01001        91 TFEAVKDRKFDGLIITGAPVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAG  148 (300)
T ss_pred             CHHHHhcCCCCEEEEcCCCcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence            456676678999999988853   222322   222233332 468999999999983

The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.

>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi

Probab=90.80  E-value=0.14  Score=48.42  Aligned_cols=89  Identities=20%  Similarity=0.211  Sum_probs=44.5

Q ss_pred             CccEEEEEEc-Cch----HHHHHHHHHCCCeEE--EEc-C-----CC----------ChhhhhccCCCeEEEcCCCCC--
Q 039151          190 KTYRVIAYDF-GIK----HNILRRLASYGCQII--VVP-S-----TW----------PASETLKLKPDGVLFSNGPGD--  244 (279)
Q Consensus       190 ~~~~I~viD~-G~k----~~I~r~L~~~G~~v~--vvp-~-----~~----------~~~~i~~~~~DgIiLSgGPGd--  244 (279)
                      ..++|+|+++ --|    .-++|.|......|.  .+. .     ++          +++++....+||+||+|.|=.  
T Consensus        33 rpL~I~IlNLMP~K~~TE~Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGAPvE~l  112 (298)
T PF04204_consen   33 RPLKIGILNLMPDKEETERQFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGAPVEQL  112 (298)
T ss_dssp             --EEEEEE---SSHHHHHHHHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---TTTTS
T ss_pred             cceEEEEEecccchHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCCCcCCC
Confidence            4578999987 333    235555554444443  332 1     12          234455568999999988853  


Q ss_pred             -CCCChH---HHHHHHHHH-CCCCEeeecHHHHH-HHHHc
Q 039151          245 -PSAVPY---AVAIVKELL-GKVPVFGICMGHQL-LGQAL  278 (279)
Q Consensus       245 -p~~~~~---~i~~Ir~~~-~~~PILGICLGhQL-La~Al  278 (279)
                       ..+.+.   ..+.+..+- ...+.|.||.|.|. |..-+
T Consensus       113 ~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~y  152 (298)
T PF04204_consen  113 PFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFY  152 (298)
T ss_dssp             -GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH
T ss_pred             CcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHc
Confidence             222322   222233332 47899999999998 44433

Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.

>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]

Probab=89.36  E-value=0.71  Score=40.61  Aligned_cols=71  Identities=13%  Similarity=0.211  Sum_probs=43.9

Q ss_pred             HHH-HHHHHC--CCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCC----ChHHHHHHHHHH--CCCCEeeecHHHHHH
Q 039151          204 NIL-RRLASY--GCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA----VPYAVAIVKELL--GKVPVFGICMGHQLL  274 (279)
Q Consensus       204 ~I~-r~L~~~--G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~----~~~~i~~Ir~~~--~~~PILGICLGhQLL  274 (279)
                      |++ |++.+-  +..+.+.+.. +++++.  ++|++||+||-...-.    .....+-+.++.  ..+|++|-|-||-+|
T Consensus        28 N~~~~c~~en~y~Ik~~~~tVK-T~~D~a--q~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~L  104 (226)
T KOG3210|consen   28 NHVEKCIVENRYEIKLSVMTVK-TKNDLA--QCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYL  104 (226)
T ss_pred             HHHHHhhccCcceEEEEEEeec-CHHHHh--hCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhhhh
Confidence            444 344443  4555566654 456664  7999999887643211    112334455555  369999999999988


Q ss_pred             HHH
Q 039151          275 GQA  277 (279)
Q Consensus       275 a~A  277 (279)
                      +.-
T Consensus       105 S~q  107 (226)
T KOG3210|consen  105 SQQ  107 (226)
T ss_pred             hhh
Confidence            754

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=88.65  E-value=2.1  Score=42.71  Aligned_cols=83  Identities=20%  Similarity=0.312  Sum_probs=56.6

Q ss_pred             cEEEEEE---cCc-hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCC-------ChHHHHHHHHHH-
Q 039151          192 YRVIAYD---FGI-KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA-------VPYAVAIVKELL-  259 (279)
Q Consensus       192 ~~I~viD---~G~-k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~-------~~~~i~~Ir~~~-  259 (279)
                      .||+|..   |-+ ...-++.|++.|++++.+..-.+ +++. .+.|+|.|.||-  |+.       .....+.|+++. 
T Consensus       246 ~rIAVA~D~AF~FyY~~nl~~Lr~~GAelv~FSPL~D-~~lP-~~~D~vYlgGGY--PElfA~~L~~n~~~~~~i~~~~~  321 (451)
T COG1797         246 VRIAVARDAAFNFYYPENLELLREAGAELVFFSPLAD-EELP-PDVDAVYLGGGY--PELFAEELSANESMRRAIKAFAA  321 (451)
T ss_pred             ceEEEEecchhccccHHHHHHHHHCCCEEEEeCCcCC-CCCC-CCCCEEEeCCCC--hHHHHHHHhhCHHHHHHHHHHHH
Confidence            6888764   333 23346899999999887753222 2333 358999997663  542       234667788888 


Q ss_pred             CCCCEeeecHHHHHHHHHc
Q 039151          260 GKVPVFGICMGHQLLGQAL  278 (279)
Q Consensus       260 ~~~PILGICLGhQLLa~Al  278 (279)
                      .++|++|=|=|.--|+..+
T Consensus       322 ~G~piyaECGGlMYL~~~l  340 (451)
T COG1797         322 AGKPIYAECGGLMYLGESL  340 (451)
T ss_pred             cCCceEEecccceeehhhe
Confidence            6899999999987776543

>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase

Probab=88.61  E-value=2.4  Score=37.86  Aligned_cols=84  Identities=15%  Similarity=0.288  Sum_probs=54.9

Q ss_pred             ccEEEEEEcCc------hHHHHHHHHHCCCe-EEEEcCCC----Chhhhhc--cCCCeEEEcCCCCCCCCC------hHH
Q 039151          191 TYRVIAYDFGI------KHNILRRLASYGCQ-IIVVPSTW----PASETLK--LKPDGVLFSNGPGDPSAV------PYA  251 (279)
Q Consensus       191 ~~~I~viD~G~------k~~I~r~L~~~G~~-v~vvp~~~----~~~~i~~--~~~DgIiLSgGPGdp~~~------~~~  251 (279)
                      +.+|++|....      ...+.+.+.+.|++ +.++....    +.+++.+  .+.|+|+++||  |+...      ...
T Consensus        29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG--~~~~~~~~l~~t~l  106 (217)
T cd03145          29 GARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGG--DQLRITSALGGTPL  106 (217)
T ss_pred             CCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCC--cHHHHHHHHcCChH
Confidence            45899998853      34466778888985 55554321    1111111  47999999876  44321      235


Q ss_pred             HHHHHHHH-CCCCEeeecHHHHHHHH
Q 039151          252 VAIVKELL-GKVPVFGICMGHQLLGQ  276 (279)
Q Consensus       252 i~~Ir~~~-~~~PILGICLGhQLLa~  276 (279)
                      .+.|++.+ .+.|+.|.--|.-+++.
T Consensus       107 ~~~l~~~~~~G~v~~G~SAGA~i~~~  132 (217)
T cd03145         107 LDALRKVYRGGVVIGGTSAGAAVMSD  132 (217)
T ss_pred             HHHHHHHHHcCCEEEEccHHHHhhhh
Confidence            56788777 78999999988888764

Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.

>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues []

Probab=86.38  E-value=0.46  Score=31.04  Aligned_cols=34  Identities=18%  Similarity=0.340  Sum_probs=25.0

Q ss_pred             CccccCCCHHHHHHHcCceEEecCchHH-HHHHhhh
Q 039151           93 SNWRCAETLGNYLAERNIMGIYDVDTRA-ITRRLRQ  127 (279)
Q Consensus        93 s~~~~~~sl~~~L~~~~ipgi~gvDTRa-Lt~~iR~  127 (279)
                      +.| +...|.+||++||||.=.+..||. |.+.+|+
T Consensus         2 dtW-s~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k~   36 (38)
T PF10281_consen    2 DTW-SDSDLKSWLKSHGIPVPKSAKTRDELLKLAKK   36 (38)
T ss_pred             CCC-CHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHH
Confidence            345 356799999999998777776774 6666664

>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=85.79  E-value=1.1  Score=37.67  Aligned_cols=69  Identities=13%  Similarity=0.226  Sum_probs=45.2

Q ss_pred             HHHHHHHHCCCeEEEEcCCC-Chhhhhc--cCCCeEEEcCCCCCCCCC------hHHHHHHHHHH-CCCCEeeecHHHHH
Q 039151          204 NILRRLASYGCQIIVVPSTW-PASETLK--LKPDGVLFSNGPGDPSAV------PYAVAIVKELL-GKVPVFGICMGHQL  273 (279)
Q Consensus       204 ~I~r~L~~~G~~v~vvp~~~-~~~~i~~--~~~DgIiLSgGPGdp~~~------~~~i~~Ir~~~-~~~PILGICLGhQL  273 (279)
                      .+.+.|.+.|+++..++... +.+++.+  .+.|+|+++||  |+...      ....+.|++++ ++.|+.|.--|.-+
T Consensus         4 ~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG--~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA~i   81 (154)
T PF03575_consen    4 KFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGG--DTFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGAMI   81 (154)
T ss_dssp             HHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S---HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHHHC
T ss_pred             HHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCC--CHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHHhh
Confidence            45678899999998887654 2222221  37999999876  55432      23566788887 67999999888755


Q ss_pred             H
Q 039151          274 L  274 (279)
Q Consensus       274 L  274 (279)
                      +
T Consensus        82 ~   82 (154)
T PF03575_consen   82 L   82 (154)
T ss_dssp             T
T ss_pred             c
Confidence            4

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.

>TIGR02069 cyanophycinase cyanophycinase

Probab=81.86  E-value=7.1  Score=35.84  Aligned_cols=84  Identities=7%  Similarity=0.169  Sum_probs=54.2

Q ss_pred             ccEEEEEEcCc------hHHHHHHHHHCCCe-EEEEcCCC----Chhhhhc--cCCCeEEEcCCCCCCCC------ChHH
Q 039151          191 TYRVIAYDFGI------KHNILRRLASYGCQ-IIVVPSTW----PASETLK--LKPDGVLFSNGPGDPSA------VPYA  251 (279)
Q Consensus       191 ~~~I~viD~G~------k~~I~r~L~~~G~~-v~vvp~~~----~~~~i~~--~~~DgIiLSgGPGdp~~------~~~~  251 (279)
                      ..||++|-...      ...+.+.|+++|++ +.+++...    +.+++.+  .+.|+|+++||-  ...      ....
T Consensus        28 ~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGn--q~~l~~~l~~t~l  105 (250)
T TIGR02069        28 DAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGD--QLRITSLLGDTPL  105 (250)
T ss_pred             CceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCC--HHHHHHHHcCCcH
Confidence            35888886532      23466778889994 66665421    1112111  479999999874  221      1234


Q ss_pred             HHHHHHHH-CCCCEeeecHHHHHHHH
Q 039151          252 VAIVKELL-GKVPVFGICMGHQLLGQ  276 (279)
Q Consensus       252 i~~Ir~~~-~~~PILGICLGhQLLa~  276 (279)
                      .+.|++++ ++.|+.|.--|.-+|+.
T Consensus       106 ~~~l~~~~~~G~vi~G~SAGA~i~~~  131 (250)
T TIGR02069       106 LDRLRKRVHEGIILGGTSAGAAVMSD  131 (250)
T ss_pred             HHHHHHHHHcCCeEEEccHHHHhccc
Confidence            56787777 68999999999887753

This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.

>COG4090 Uncharacterized protein conserved in archaea [Function unknown]

Probab=81.31  E-value=2.7  Score=35.48  Aligned_cols=37  Identities=30%  Similarity=0.484  Sum_probs=24.2

Q ss_pred             CCCeEEEcCCCCCCCCChHHHHHHHHHH---CCCCEeeecH
Q 039151          232 KPDGVLFSNGPGDPSAVPYAVAIVKELL---GKVPVFGICM  269 (279)
Q Consensus       232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~---~~~PILGICL  269 (279)
                      ..|.|+|.||-.-|.- ....+-+|+++   .++|+.|+|+
T Consensus        85 ~aDvvVLlGGLaMP~~-gv~~d~~kel~ee~~~kkliGvCf  124 (154)
T COG4090          85 SADVVVLLGGLAMPKI-GVTPDDAKELLEELGNKKLIGVCF  124 (154)
T ss_pred             cccEEEEEcccccCcC-CCCHHHHHHHHHhcCCCceEEeeH
Confidence            4899999999765642 11223333333   5679999996

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=80.55  E-value=2  Score=41.82  Aligned_cols=44  Identities=16%  Similarity=0.217  Sum_probs=33.8

Q ss_pred             cCCCeEEEcCCCCCCCCC---hHHHHHHHHHH-CCCCEeeecHHHHHH
Q 039151          231 LKPDGVLFSNGPGDPSAV---PYAVAIVKELL-GKVPVFGICMGHQLL  274 (279)
Q Consensus       231 ~~~DgIiLSgGPGdp~~~---~~~i~~Ir~~~-~~~PILGICLGhQLL  274 (279)
                      .+++.+|+.||...|...   ....+.||+++ .+.-.||||.|.-.-
T Consensus        48 ~~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~a   95 (367)
T PF09825_consen   48 SKCALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAYYA   95 (367)
T ss_pred             cCCcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcchhhh
Confidence            368899999888666531   23478899999 688899999997653

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=80.45  E-value=4.4  Score=38.98  Aligned_cols=46  Identities=22%  Similarity=0.318  Sum_probs=36.2

Q ss_pred             CCCeEEEcCCCCCCCC--ChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          232 KPDGVLFSNGPGDPSA--VPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       232 ~~DgIiLSgGPGdp~~--~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      .+|-+++.+|-+....  .+...+++|+.. .+.++-|||-|.-+||.|
T Consensus        76 ~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~a  124 (328)
T COG4977          76 PIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEA  124 (328)
T ss_pred             cceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence            4788888666544322  255889999998 699999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	279
1m6v_B	382	Crystal Structure Of The G359f (Small Subunit) Poin		2e-67
1jdb_C	382	Carbamoyl Phosphate Synthetase From Escherichia Col		2e-67
1t36_B	382	Crystal Structure Of E. Coli Carbamoyl Phosphate Sy		3e-67
1c30_B	382	Crystal Structure Of Carbamoyl Phosphate Synthetase		3e-66
1a9x_B	379	Carbamoyl Phosphate Synthetase: Caught In The Act O		3e-66
1cs0_B	382	Crystal Structure Of Carbamoyl Phosphate Synthetase		4e-66
1wl8_A	189	Crystal Structure Of Ph1346 Protein From Pyrococcus		8e-07
2d7j_A	209	Crystal Structure Analysis Of Glutamine Amidotransf		1e-06
2ywc_A	503	Crystal Structure Of Gmp Synthetase From Thermus Th		7e-06
2ywb_A	503	Crystal Structure Of Gmp Synthetase From Thermus Th		7e-06
1qdl_B	195	The Crystal Structure Of Anthranilate Synthase From		7e-05
1i1q_B	192	Structure Of The Cooperative Allosteric Anthranilat		7e-05
1i7q_B	193	Anthranilate Synthase From S. Marcescens Length = 1		1e-04

>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point Mutant Of Carbamoyl Phosphate Synthetase Length = 382

Iteration: 1
 Score =  252 bits (644), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 130/282 (46%), Positives = 177/282 (62%), Gaps = 10/282 (3%)
Query: 5   VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
           + +A LVLEDG+ +  ++ GA+G+ VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIG
Sbjct: 2   IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61
Query: 65  NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
           N G N  DEES Q    GLVIR L +  SN+R  E L +YL   NI+ I D+DTR +TR 
Sbjct: 62  NVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRL 121
Query: 125 LRQDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDF- 182
           LR+ G+  G +   ++      LE +R++  + G+DL  +V+  E + W + +   W   
Sbjct: 122 LREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGS---WTLT 178
Query: 183 ----NTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
                  + +   + V+AYDFG K NILR L   GC++ +VP+   A + LK+ PDG+  
Sbjct: 179 GGLPQAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFL 238
Query: 239 SNGPGDPSAVPYAV-AIVKELLGKVPVFGICMGHQLLGQALG 279
           SNGPGDP+   YA+ AI K L   +PVFGIC+GHQLL  A G
Sbjct: 239 SNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASG 280

>pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 382

Iteration: 1
 Score =  252 bits (643), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 130/282 (46%), Positives = 177/282 (62%), Gaps = 10/282 (3%)
Query: 5   VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
           + +A LVLEDG+ +  ++ GA+G+ VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIG
Sbjct: 2   IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61
Query: 65  NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
           N G N  DEES Q    GLVIR L +  SN+R  E L +YL   NI+ I D+DTR +TR 
Sbjct: 62  NVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRL 121
Query: 125 LRQDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDF- 182
           LR+ G+  G +   ++      LE +R++  + G+DL  +V+  E + W + +   W   
Sbjct: 122 LREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGS---WTLT 178
Query: 183 ----NTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
                  + +   + V+AYDFG K NILR L   GC++ +VP+   A + LK+ PDG+  
Sbjct: 179 GGLPQAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFL 238
Query: 239 SNGPGDPSAVPYAV-AIVKELLGKVPVFGICMGHQLLGQALG 279
           SNGPGDP+   YA+ AI K L   +PVFGIC+GHQLL  A G
Sbjct: 239 SNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASG 280

>pdb|1T36|B Chain B, Crystal Structure Of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248d Complexed With Uridine 5'-Monophosphate Length = 382

Iteration: 1
 Score =  251 bits (641), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 130/282 (46%), Positives = 177/282 (62%), Gaps = 10/282 (3%)
Query: 5   VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
           + +A LVLEDG+ +  ++ GA+G+ VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIG
Sbjct: 2   IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61
Query: 65  NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
           N G N  DEES Q    GLVIR L +  SN+R  E L +YL   NI+ I D+DTR +TR 
Sbjct: 62  NVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRL 121
Query: 125 LRQDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDFN 183
           LR+ G+  G +   ++      LE +R++  + G+DL  +V+  E + W + +   W   
Sbjct: 122 LREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGS---WTLT 178
Query: 184 -----THERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
                  + +   + V+AYDFG K NILR L   GC++ +VP+   A + LK+ PDG+  
Sbjct: 179 GGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFL 238
Query: 239 SNGPGDPSAVPYAV-AIVKELLGKVPVFGICMGHQLLGQALG 279
           SNGPGDP+   YA+ AI K L   +PVFGIC+GHQLL  A G
Sbjct: 239 SNGPGDPAPDDYAITAIQKFLETDIPVFGICLGHQLLALASG 280

>pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s Length = 382

Iteration: 1
 Score =  248 bits (633), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 129/282 (45%), Positives = 176/282 (62%), Gaps = 10/282 (3%)
Query: 5   VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
           + +A LVLEDG+ +  ++ GA+G+ VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIG
Sbjct: 2   IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61
Query: 65  NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
           N G N  DEES Q    GLVIR L +  SN+R  E L +YL   NI+ I D+DTR +TR 
Sbjct: 62  NVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRL 121
Query: 125 LRQDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDFN 183
           LR+ G+  G +   ++      LE +R++  + G+DL  +V+  E + W + +   W   
Sbjct: 122 LREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGS---WTLT 178
Query: 184 -----THERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
                  + +   + V+AYDFG K NILR L   GC++ +VP+   A + LK+ PDG+  
Sbjct: 179 GGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFL 238
Query: 239 SNGPGDPSAVPYAV-AIVKELLGKVPVFGICMGHQLLGQALG 279
           SNGPGDP+   YA+ AI K L   +PVFGI +GHQLL  A G
Sbjct: 239 SNGPGDPAPCDYAITAIQKFLETDIPVFGISLGHQLLALASG 280

>pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught In The Act Of Glutamine Hydrolysis Length = 379

Iteration: 1
 Score =  248 bits (632), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 129/282 (45%), Positives = 176/282 (62%), Gaps = 10/282 (3%)
Query: 5   VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
           + +A LVLEDG+ +  ++ GA+G+ VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIG
Sbjct: 1   IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 60
Query: 65  NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
           N G N  DEES Q    GLVIR L +  SN+R  E L +YL   NI+ I D+DTR +TR 
Sbjct: 61  NVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRL 120
Query: 125 LRQDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDF- 182
           LR+ G+  G +   ++      LE +R++  + G+DL  +V+  E + W + +   W   
Sbjct: 121 LREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGS---WTLT 177
Query: 183 ----NTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
                  + +   + V+AYDFG K NILR L   GC++ +VP+   A + LK+ PDG+  
Sbjct: 178 GGLPQAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFL 237
Query: 239 SNGPGDPSAVPYAV-AIVKELLGKVPVFGICMGHQLLGQALG 279
           SNGPGDP+   YA+ AI K L   +PVFGI +GHQLL  A G
Sbjct: 238 SNGPGDPAPCDYAITAIQKFLETDIPVFGIXLGHQLLALASG 279

>pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-glutamate Gamma-semialdehyde Length = 382

Iteration: 1
 Score =  248 bits (632), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 129/282 (45%), Positives = 176/282 (62%), Gaps = 10/282 (3%)
Query: 5   VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
           + +A LVLEDG+ +  ++ GA+G+ VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIG
Sbjct: 2   IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61
Query: 65  NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
           N G N  DEES Q    GLVIR L +  SN+R  E L +YL   NI+ I D+DTR +TR 
Sbjct: 62  NVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRL 121
Query: 125 LRQDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDFN 183
           LR+ G+  G +   ++      LE +R++  + G+DL  +V+  E + W + +   W   
Sbjct: 122 LREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGS---WTLT 178
Query: 184 -----THERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
                  + +   + V+AYDFG K NILR L   GC++ +VP+   A + LK+ PDG+  
Sbjct: 179 GGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFL 238
Query: 239 SNGPGDPSAVPYAV-AIVKELLGKVPVFGICMGHQLLGQALG 279
           SNGPGDP+   YA+ AI K L   +PVFGI +GHQLL  A G
Sbjct: 239 SNGPGDPAPCDYAITAIQKFLETDIPVFGIXLGHQLLALASG 280

>pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus Horikoshii Length = 189

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%)
Query: 203 HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKV 262
           H I R L   G +  ++P+T P  E   + P G++FS GP   +       +       V
Sbjct: 14  HRIWRTLRYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGPSLENTGNCEKVLEHYDEFNV 73
Query: 263 PVFGICMGHQLLGQALG 279
           P+ GIC+GHQL+ +  G
Sbjct: 74  PILGICLGHQLIAKFFG 90

>pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase From Pyrococcus Horikoshii Ot3 Length = 209

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%)
Query: 203 HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKV 262
           H I R L   G +  ++P+T P  E   + P G++FS GP   +       +       V
Sbjct: 34  HRIWRTLRYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGPSLENTGNCEKVLEHYDEFNV 93
Query: 263 PVFGICMGHQLLGQALG 279
           P+ GIC+GHQL+ +  G
Sbjct: 94  PILGICLGHQLIAKFFG 110

>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus Thermophilus In Complex With Xmp Length = 503

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 194 VIAYDFGIKHN--ILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPG---DPSAV 248
           V+  DFG ++   I RRL       +++P   P  E LK +P  ++ S GP    DP A 
Sbjct: 2   VLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAP 61
Query: 249 PYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
                +    L   P+ GIC G QLL Q LG
Sbjct: 62  RPDPRLFSSGL---PLLGICYGXQLLAQELG 89

>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus Thermophilus Length = 503

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 194 VIAYDFGIKHN--ILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPG---DPSAV 248
           V+  DFG ++   I RRL       +++P   P  E LK +P  ++ S GP    DP A 
Sbjct: 2   VLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAP 61
Query: 249 PYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
                +    L   P+ GIC G QLL Q LG
Sbjct: 62  RPDPRLFSSGL---PLLGICYGMQLLAQELG 89

>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From Sulfolobus Solfataricus Length = 195

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 230 KLKPDGVLFSNGPGDPSA---VPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           ++ PD ++ S GPG P     +  ++ ++K L  + P+ G+C+GHQ +G A G
Sbjct: 43  RIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFG 95

>pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric Anthranilate Synthase From Salmonella Typhimurium Length = 192

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 204 NILRRLASYGCQIIVVPSTWPASETL----KLKPDGVLFSNGPGDPSAVPYAVAIVKELL 259
           N+  +L + G  +++  +  PA   +     +K   ++ S GPG PS       ++  L 
Sbjct: 15  NLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRLR 74
Query: 260 GKVPVFGICMGHQLLGQALG 279
           GK+P+ GIC+GHQ + +A G
Sbjct: 75  GKLPIIGICLGHQAIVEAYG 94

>pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens Length = 193

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 203 HNILRRLASYGCQIIVVPSTWPASETLK----LKPDGVLFSNGPGDPSAVPYAVAIVKEL 258
           +N++ +L + G Q+++  +   A   ++    ++   ++ S GPG PS       +++ L
Sbjct: 15  YNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGCMPELLQRL 74
Query: 259 LGKVPVFGICMGHQLLGQALG 279
            G++P+ GIC+GHQ + +A G
Sbjct: 75  RGQLPIIGICLGHQAIVEAYG 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	279
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	1e-162
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	3e-14
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	1e-13
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	9e-10
3uow_A	556	GMP synthetase; structural genomics consortium, SG	6e-09
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	7e-09
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	2e-08
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	3e-08
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	4e-08
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	4e-08
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	2e-07
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	2e-07
2a9v_A	212	GMP synthase; structural genomics, joint center fo	5e-07
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	2e-04
3m3p_A	250	Glutamine amido transferase; structural genomics,	8e-04

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* Length = 379

 Score =  454 bits (1171), Expect = e-162
 Identities = 126/277 (45%), Positives = 175/277 (63%), Gaps = 4/277 (1%)

Query: 7   NARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNT 66
           +A LVLEDG+ +  ++ GA+G+ VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIGN 
Sbjct: 3   SALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNV 62

Query: 67  GVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLR 126
           G N  DEES Q    GLVIR L +  SN+R  E L +YL   NI+ I D+DTR +TR LR
Sbjct: 63  GTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLR 122

Query: 127 QDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKEPFEWVEST--KPDWDFN 183
           + G+  G +   ++      LE +R++  + G+DL  +V+  E + W + +         
Sbjct: 123 EKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPQ 182

Query: 184 THERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPG 243
             + +   + V+AYDFG K NILR L   GC++ +VP+   A + LK+ PDG+  SNGPG
Sbjct: 183 AKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPG 242

Query: 244 DPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279
           DP+   YA+  +++ L   +PVFGIC+GHQLL  A G
Sbjct: 243 DPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASG 279

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1 Length = 195

 Score = 68.6 bits (169), Expect = 3e-14
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 204 NILRRLASYGCQIIVVPS---TWPASETLKLKPDGVLFSNGPGDPSAVPYA---VAIVKE 257
           NI + +   G   IV+ +   +       ++ PD ++ S GPG P         + ++K 
Sbjct: 16  NIAQIVGELGSYPIVIRNDEIS--IKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKY 73

Query: 258 LLGKVPVFGICMGHQLLGQALG 279
           L  + P+ G+C+GHQ +G A G
Sbjct: 74  LGKRTPILGVCLGHQAIGYAFG 95

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* Length = 192

 Score = 67.1 bits (165), Expect = 1e-13
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 204 NILRRLASYGCQIIVVPSTWPASETL----KLKPDGVLFSNGPGDPSAVPYAVAIVKELL 259
           N+  +L + G  +++  +  PA   +     +K   ++ S GPG PS       ++  L 
Sbjct: 15  NLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRLR 74

Query: 260 GKVPVFGICMGHQLLGQALG 279
           GK+P+ GIC+GHQ + +A G
Sbjct: 75  GKLPIIGICLGHQAIVEAYG 94

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A* Length = 645

 Score = 57.9 bits (140), Expect = 9e-10
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 9/83 (10%)

Query: 203 HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAV-----AIVKE 257
             I ++L+S G    V             + D V+   GPGDPS           A ++ 
Sbjct: 460 AMIAQQLSSLGLATEVCGVHDAVDL---ARYDVVVMGPGPGDPSDAGDPRIARLYAWLRH 516

Query: 258 LL-GKVPVFGICMGHQLLGQALG 279
           L+    P   +C+ HQ+L   LG
Sbjct: 517 LIDEGKPFMAVCLSHQILNAILG 539

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Length = 556

 Score = 55.3 bits (134), Expect = 6e-09
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 12/96 (12%)

Query: 193 RVIAYDFGIKHN--ILRRLASYG--CQIIVVPSTWPASETLKLKPDGVLFSNGPG---DP 245
           +++  +FG ++   I++RL +     +           +   +   GV+ S GP    + 
Sbjct: 9   KILVLNFGSQYFHLIVKRLNNIKIFSET--KDYGVELKDIKDMNIKGVILSGGPYSVTEA 66

Query: 246 SAVPYAVAIVKELL--GKVPVFGICMGHQLLGQALG 279
            + P+    V E     K+P+FGIC G Q +   + 
Sbjct: 67  GS-PHLKKEVFEYFLEKKIPIFGICYGMQEIAVQMN 101

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 Length = 315

 Score = 54.7 bits (131), Expect = 7e-09
 Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 12/107 (11%)

Query: 184 THERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLK-LKPDGVLFSNGP 242
             +  +K  +     + I  + ++ L S G +++ V       +     K    +   G 
Sbjct: 37  MQKCRNKVMKNYGRYY-IAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGG 95

Query: 243 GDPSAVPYAVAIVKELLGKV----------PVFGICMGHQLLGQALG 279
                      + K                PV+G C+G + L   + 
Sbjct: 96  SVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLIS 142

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A Length = 189

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 12/89 (13%)

Query: 198 DFGIKHN--ILRRLASYG--CQIIVVPSTWPASETLKLKPDGVLFSNGPG---DPSAVPY 250
           D G ++   I R L   G   +I  +P+T P  E   + P G++FS GP      +    
Sbjct: 7   DNGGQYVHRIWRTLRYLGVETKI--IPNTTPLEEIKAMNPKGIIFSGGPSLENTGNC-EK 63

Query: 251 AVAIVKELLGKVPVFGICMGHQLLGQALG 279
            +    E    VP+ GIC+GHQL+ +  G
Sbjct: 64  VLEHYDEF--NVPILGICLGHQLIAKFFG 90

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Length = 503

 Score = 53.2 bits (129), Expect = 3e-08
 Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 12/93 (12%)

Query: 194 VIAYDFGIKHN--ILRRLASYG--CQIIVVPSTWPASETLKLKPDGVLFSNGPG---DPS 246
           V+  DFG ++   I RRL        I  +P   P  E LK +P  ++ S GP    DP 
Sbjct: 2   VLVLDFGSQYTRLIARRLRELRAFSLI--LPGDAPLEEVLKHRPQALILSGGPRSVFDPD 59

Query: 247 AVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           A P     +      +P+ GIC G QLL Q LG
Sbjct: 60  A-PRPDPRLFSS--GLPLLGICYGMQLLAQELG 89

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} Length = 218

 Score = 51.8 bits (125), Expect = 4e-08
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 12/94 (12%)

Query: 193 RVIAYDFGIKHN--ILRRLASYG--CQIIVVPSTWPASETLKLKPDGVLFSNGPG---DP 245
            V+  D G ++   I RR+       +I   P   PA    +     ++ S GP      
Sbjct: 26  AVVILDAGAQYGKVIDRRVRELFVQSEI--FPLETPAFAIKEQGFRAIIISGGPNSVYAE 83

Query: 246 SAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
            A P+    +  +    PV GIC G Q++ +  G
Sbjct: 84  DA-PWFDPAIFTI--GKPVLGICYGMQMMNKVFG 114

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Length = 527

 Score = 52.9 bits (128), Expect = 4e-08
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 12/94 (12%)

Query: 193 RVIAYDFGIKHN--ILRRLASYG--CQIIVVPSTWPASETLKLKPDGVLFSNGPG---DP 245
           R++  DFG ++   I RR+   G  C++  +P            P G++ S GP      
Sbjct: 12  RILILDFGSQYAQLIARRVREIGVYCEL--MPCDIDEETIRDFNPHGIILSGGPETVTLS 69

Query: 246 SAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
                A A + E+    PV GIC G Q +   LG
Sbjct: 70  HT-LRAPAFIFEI--GCPVLGICYGMQTMAYQLG 100

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Length = 525

 Score = 50.9 bits (123), Expect = 2e-07
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 12/94 (12%)

Query: 193 RVIAYDFGIKHN--ILRRLASYG--CQIIVVPSTWPASETLKLKPDGVLFSNGPG---DP 245
           R++  DFG ++   + RR+   G  C++         ++     P G++ S GP    + 
Sbjct: 9   RILILDFGSQYTQLVARRVRELGVYCEL--WAWDVTEAQIRDFNPSGIILSGGPESTTEE 66

Query: 246 SAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           ++ P A   V E    VPVFG+C G Q +   LG
Sbjct: 67  NS-PRAPQYVFEA--GVPVFGVCYGMQTMAMQLG 97

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Length = 697

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 8/92 (8%)

Query: 193 RVIAYDFGIKHN--ILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPG---DPSA 247
            V+  D G ++   I RR+     Q  + P   PA    +     ++ S GP       A
Sbjct: 31  AVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDA 90

Query: 248 VPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
            P+    +  +    PV GIC G Q++ +  G
Sbjct: 91  -PWFDPAIFTI--GKPVLGICYGMQMMNKVFG 119

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 Length = 212

 Score = 48.3 bits (116), Expect = 5e-07
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 14/105 (13%)

Query: 183 NTHERNSKTYRVIAYDFGIKHN--ILRRLASYG--CQIIVVPSTWPASETLKLKPDGVLF 238
             H  +    ++   D G +      R L   G   +I  VP+   +SE L    DG++ 
Sbjct: 5   KIHHHHHHMLKIYVVDNGGQWTHREWRVLRELGVDTKI--VPNDIDSSE-LD-GLDGLVL 60

Query: 239 SNGP----GDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           S G      +   +      + +     P+ GIC+G Q +    G
Sbjct: 61  SGGAPNIDEELDKLGSVGKYIDDH--NYPILGICVGAQFIALHFG 103

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 Length = 239

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 12/85 (14%)

Query: 205 ILRRLASYGCQIIVVPSTWPASETLKL---KPDGVLFSNGPG---DPSAVPYAVA----I 254
           +             +    P  E L+    +   V+   G     +    P+       I
Sbjct: 29  MEDIFREKNWSFDYLD--TPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLI 86

Query: 255 VKELLGKVPVFGICMGHQLLGQALG 279
            + L  ++P  GIC+G Q+L + LG
Sbjct: 87  EEILKKEIPFLGICLGSQMLAKVLG 111

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* Length = 250

 Score = 39.0 bits (91), Expect = 8e-04
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 254 IVKELLGKVPVFGICMGHQLLGQALG 279
           I   +  +VPV G C+G QLL +A+G
Sbjct: 75  IRDAVAQRVPVIGHCLGGQLLAKAMG 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	279
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	100.0
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	99.97
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	99.95
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	99.79
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	99.75
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	99.72
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	99.71
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	99.66
3uow_A	556	GMP synthetase; structural genomics consortium, SG	99.65
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	99.65
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	99.65
2a9v_A	212	GMP synthase; structural genomics, joint center fo	99.64
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	99.63
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	99.61
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	99.61
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	99.56
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	99.55
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	99.5
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	99.5
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	99.5
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	99.5
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	99.5
3m3p_A	250	Glutamine amido transferase; structural genomics,	99.46
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	99.46
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	99.43
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	99.41
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	99.4
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	99.38
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	99.37
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	99.32
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	99.26
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	99.18
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	99.14
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	98.82
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	98.81
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	98.57
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	98.54
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	98.4
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	98.24
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	98.09
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	97.84
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	97.83
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	97.74
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	97.67
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	97.61
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	97.59
2fex_A	188	Conserved hypothetical protein; structural genomic	97.48
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	97.45
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	97.37
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	97.33
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	97.3
1u9c_A	224	APC35852; structural genomics, protein structure i	97.28
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	97.28
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	97.19
3gra_A	202	Transcriptional regulator, ARAC family; transcript	97.17
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	97.12
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	97.08
3n7t_A	247	Macrophage binding protein; seattle structural gen	97.07
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	96.88
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	96.85
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	96.81
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	96.8
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	96.51
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	96.46
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	96.41
3er6_A	209	Putative transcriptional regulator protein; struct	96.29
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	95.96
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	95.65
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	94.89
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	94.36
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	94.12
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	87.54
2gk3_A	256	Putative cytoplasmic protein; STM3548, structural	85.15
2r47_A	157	Uncharacterized protein MTH_862; unknown function,	83.44
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	83.29

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=100.00  E-value=3.4e-98  Score=716.24  Aligned_cols=271  Identities=47%  Similarity=0.847  Sum_probs=242.4

Q ss_pred             ceeEEEecCCCEEEEEeeCCCcceeeeEEEeecCCcccccccCCCCCCcEEEeccCcccccCCCCCccccccceeeEEEE
Q 039151            6 ANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVI   85 (279)
Q Consensus         6 ~~a~L~LedG~~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQiv~~TyP~IGNyGi~~~~~Es~~~~~~g~iv   85 (279)
                      ++|+|+|||||+|+|++||++++++||||||||||||||+||||||+|||||||||||||||||++|+||++||++|+||
T Consensus         2 ~~~~l~ledG~~~~g~~~g~~~~~~gEvvf~T~mtGYqe~ltDpsy~gqi~~~t~P~iGn~Gv~~~d~es~~~~~~g~vv   81 (379)
T 1a9x_B            2 KSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVI   81 (379)
T ss_dssp             CEEEEEETTSCEEEEEECSCSEEEEEEEEEECCSSCHHHHHTCGGGBTEEEEECSSBCCTTCCCGGGCSSSSCCBSEEEC
T ss_pred             CCeEEEECCCCEEEEEEeCCCCCEEEEEEEeCCCCcCCccccCcccccceeEEcCCCccEEccCchhhccccceEEEEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCccccCCCHHHHHHHcCceEEecCchHHHHHHhhhcCceeEEEecCCCCChHHHHHhhcCC-CCCCCCccccc
Q 039151           86 RSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDV  164 (279)
Q Consensus        86 ~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~~~~-~~~~~~lv~~v  164 (279)
                      ||+|..|||||+++||++||+++|||||+||||||||||||++|+|+|+|++++..+.+++.+.++++ ++++.|||++|
T Consensus        82 ~~~~~~~s~~~~~~~l~~~l~~~~i~gi~giDTR~lt~~iR~~G~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v  161 (379)
T 1a9x_B           82 RDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEV  161 (379)
T ss_dssp             SBCCSCCCCTTCCSCHHHHHHHTTCEEEESSCHHHHHHHHHHHCCEEEEEEESSSCCHHHHHHHHHHCCCSTTCBCHHHH
T ss_pred             ccCCCCCCcccccCCHHHHHHHCCCccccCCCHHHHHHHHHhcCCeeEEEecCCCCCHHHHHHHHHhCCCccccCcccee
Confidence            99999999999999999999999999999999999999999999999999885222334455555544 78889999999


Q ss_pred             ccCCeEEecCCCCCCCCCCcc--CCCCC---ccEEEEEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEc
Q 039151          165 SGKEPFEWVESTKPDWDFNTH--ERNSK---TYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFS  239 (279)
Q Consensus       165 s~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLS  239 (279)
                      ||+++|.|.+.   .|.+...  .....   ++||+++|||+++||+|+|.++|++++++|++.+++++...++||||||
T Consensus       162 s~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~V~viD~G~k~ni~r~L~~~G~~v~vvp~~~~~e~i~~~~~DGliLs  238 (379)
T 1a9x_B          162 TTAEAYSWTQG---SWTLTGGLPQAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLS  238 (379)
T ss_dssp             SCSSCEEECCC---CCBTTTBSCCCCCGGGCCEEEEEEESSCCHHHHHHHHHTTEEEEEEETTCCHHHHHTTCCSEEEEC
T ss_pred             CCCCCEEeCCC---CcccccccccccccccCCCEEEEEECCChHHHHHHHHHCCCEEEEEeccCCHHHHhhcCCCEEEEe
Confidence            99999998542   2322110  00001   4799999999999999999999999999999888888876789999999


Q ss_pred             CCCCCCCCChHHHHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151          240 NGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       240 gGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~AlG  279 (279)
                      ||||+|.+....++.||+++ .++|+||||||||||+.|+|
T Consensus       239 GGPgdp~~~~~~~~~Ir~~~~~~~PILGIClG~QLLa~A~G  279 (379)
T 1a9x_B          239 NGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASG  279 (379)
T ss_dssp             CCSBCSTTCHHHHHHHHHHTTSCCCEEEETHHHHHHHHHTT
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCEEEECchHHHHHHHhC
Confidence            99999998888999999999 58999999999999999997

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=99.97  E-value=6.9e-33  Score=275.19  Aligned_cols=199  Identities=16%  Similarity=0.121  Sum_probs=155.6

Q ss_pred             EEEeccCcccccCCCC--------CccccccceeeEEEEeccCCCCCccccCCCHHHHHHHcCceEEecCchHH-HHHHh
Q 039151           55 FVLMTNPHIGNTGVNF--------DDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRA-ITRRL  125 (279)
Q Consensus        55 iv~~TyP~IGNyGi~~--------~~~Es~~~~~~g~iv~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRa-Lt~~i  125 (279)
                      |-+...|.|+++|-..        +++||.+||+.|+|||+.++.|||||++.||..||++++||+|.|||||+ |+++|
T Consensus       172 ~h~~~~p~~~~~ge~ktkptq~sv~~l~s~gi~pd~lv~R~~~~~~~~~r~kisL~~~v~~~~Vi~~~dvdt~y~lp~~l  251 (545)
T 1s1m_A          172 MHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLL  251 (545)
T ss_dssp             EEEEECCEETTTTEECCHHHHHHHHHHHTTTCCCSEEEEEESSCCCHHHHHHHHHTTCCCSSCEEEEECCSCGGGHHHHH
T ss_pred             EEEeCcccccCCCCcCCCCCcCCHHHHhCCCCccCEEEEeCCCCCCchhhccCChhhCccccCceecCCCChHHHHHHHH
Confidence            5677899999999654        46899999999999999999999999999999999999999999999998 99999


Q ss_pred             hhcCceeEEEecCCCCChHHHHHhhcCCCCCCCCcccccccCCeEEecCCCCCCCCCCccCCCCCccEEEEEEcCchHHH
Q 039151          126 RQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHERNSKTYRVIAYDFGIKHNI  205 (279)
Q Consensus       126 R~~G~m~g~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viD~G~k~~I  205 (279)
                      |++|.|+++|.....+...   ..+..|    .++|++|++++++..-.              -.+..|+++|  .+.|+
T Consensus       252 r~~G~~~~ii~~~~l~~~~---~~l~~w----~~lv~~v~~~~~~v~i~--------------~vGkyv~l~D--~y~Si  308 (545)
T 1s1m_A          252 KSQGLDDYICKRFSLNCPE---ANLSEW----EQVIFEEANPVSEVTIG--------------MVGKYIELPD--AYKSV  308 (545)
T ss_dssp             HHTTHHHHHHHHTTCCCCC---CCCHHH----HHHHHHHHCCSEEEEEE--------------EEESSCSSGG--GGHHH
T ss_pred             HHcCChhhhhhhCCCCchh---HHHHHH----HHHHHhccCCCCeEEeC--------------CcCCeEEEEE--HHHHH
Confidence            9999999998653321000   001111    26788888887665321              0123466667  57899


Q ss_pred             HHHHHHCCC----eEEEEcCCCChhhhh------ccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHHHHHH
Q 039151          206 LRRLASYGC----QIIVVPSTWPASETL------KLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLL  274 (279)
Q Consensus       206 ~r~L~~~G~----~v~vvp~~~~~~~i~------~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGhQLL  274 (279)
                      .++|..+|+    ++.+++.+  .+++.      ..++||||||||||+|.. ...++.++++. .++|+||||||||+|
T Consensus       309 ~~aL~~~G~~~~~~V~i~~~d--~e~i~~~~~~~l~~~DGIilsGGpg~~~~-~g~~~~i~~a~~~~~PiLGIClG~Qll  385 (545)
T 1s1m_A          309 IEALKHGGLKNRVSVNIKLID--SQDVETRGVEILKGLDAILVPGGFGYRGV-EGMITTARFARENNIPYLGICLGMQVA  385 (545)
T ss_dssp             HHHHHHHHHHHTEEEEEEEEE--HHHHHHHCTTTTTTCSEEEECCCCSSTTH-HHHHHHHHHHHHTTCCEEEETHHHHHH
T ss_pred             HHHHHHhCcccCCeEEEccCC--HHHhhhhhhhhhhcCCEEEECCCCCCccc-hhhHHHHHHHHHCCCcEEEECChHHHH
Confidence            999988876    44555443  23321      247999999999999874 56788899888 689999999999999


Q ss_pred             HHHcC
Q 039151          275 GQALG  279 (279)
Q Consensus       275 a~AlG  279 (279)
                      +.|+|
T Consensus       386 ~va~G  390 (545)
T 1s1m_A          386 LIDYA  390 (545)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            99886

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=99.95  E-value=7.8e-31  Score=260.69  Aligned_cols=200  Identities=16%  Similarity=0.080  Sum_probs=147.7

Q ss_pred             EEEeccCcccccCCCC--------CccccccceeeEEEEeccCCCCCccccCCCHHHHHHHcCceEEecCchHH-HHHHh
Q 039151           55 FVLMTNPHIGNTGVNF--------DDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRA-ITRRL  125 (279)
Q Consensus        55 iv~~TyP~IGNyGi~~--------~~~Es~~~~~~g~iv~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRa-Lt~~i  125 (279)
                      |-+-.-|.|+++|-..        +++||.+|++.|+|||+.++.|||||++.+|..||++++||+|.|||||+ |+++|
T Consensus       183 ~h~~~~p~~~~~~e~ktkptq~sv~~lrs~gi~pd~lvvR~~~~~~~~~r~k~sL~~~v~~~~Vi~~~dvdt~y~lp~~l  262 (550)
T 1vco_A          183 LHLTLVPYLETSEEFKTKPTQHSVATLRGVGIQPDILVLRSARPVPEEVRRKVALFTNVRPGHVFSSPTVEHLYEVPLLL  262 (550)
T ss_dssp             EEEEECCEETTTTEECCHHHHHHHHHHHHTTCCCSEEEEEESSCCCHHHHHHHHHHHTCCGGGEEEEECCSCTTHHHHHH
T ss_pred             EEEeCeecccCCCCcCCCCcchhHHHHhcCCCccCEEEEeCCCCCCcchhcccchhcCCCccCeeecCCCChHHHHHHHH
Confidence            5566779999998765        36899999999999999999999999999999999999999999999999 99999


Q ss_pred             hhcCceeEEEecCCCCC-hHHHHHhhcCCCCCCCCcccccccCC-eEEecCCCCCCCCCCccCCCCCccEEEEEEcC--c
Q 039151          126 RQDGSLIGVLSTEESKS-DQELLEMSRSWDIVGIDLISDVSGKE-PFEWVESTKPDWDFNTHERNSKTYRVIAYDFG--I  201 (279)
Q Consensus       126 R~~G~m~g~i~~~~~~~-~~~~~~~~~~~~~~~~~lv~~vs~~~-~~~~~~~~~~~~~~~~~~~~~~~~~I~viD~G--~  201 (279)
                      |++|.|+++|.....+. .+.+    ..|    .+++..+...+ .....               -.+..++++|..  +
T Consensus       263 r~~G~~~~v~~~~~l~~~~~~l----~~w----~~~~~~~~~~~~~v~I~---------------ivgkyv~l~D~y~Sv  319 (550)
T 1vco_A          263 EEQGLGRAVERALGLEAVIPNL----SFW----QEAVRVLKHPERTVKIA---------------IAGKYVKMPDAYLSL  319 (550)
T ss_dssp             HHHTHHHHHHHHTTCCCCCCCC----HHH----HHHHHHHHSCSEEEEEE---------------EEESCC---CTTHHH
T ss_pred             HHcCChhhhHhhCCCCchhHHH----HHh----HHHHHhhcCCCCceEEc---------------ccCCeEEEEecHHHH
Confidence            99999999886532110 0000    111    01222222111 11110               012357788876  4


Q ss_pred             hHHHHHHHHHCCCeEEEEcCCCC------hhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHHHHHH
Q 039151          202 KHNILRRLASYGCQIIVVPSTWP------ASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLL  274 (279)
Q Consensus       202 k~~I~r~L~~~G~~v~vvp~~~~------~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGhQLL  274 (279)
                      +.++.+.+.+.|+++.+++.+.+      +++.+ .++||||||||||+|.. ...++.++++. .++|+||||||||+|
T Consensus       320 ~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L-~~~DGIILpGGfGd~~~-~g~i~~ir~a~e~~iPiLGICLGmQlL  397 (550)
T 1vco_A          320 LEALRHAGIKNRARVEVKWVDAESLEAADLEEAF-RDVSGILVPGGFGVRGI-EGKVRAAQYARERKIPYLGICLGLQIA  397 (550)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHT-TTCSCEEECCCCSSTTH-HHHHHHHHHHHHTTCCEEEETHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEEEEeCccccccchHHHHH-hcCCEEEECCCCCCcch-hhhHHHHHHHHHCCCcEEEECcCHHHH
Confidence            67777788888999998865431      22323 47999999999999964 56788899888 799999999999999


Q ss_pred             HHHcC
Q 039151          275 GQALG  279 (279)
Q Consensus       275 a~AlG  279 (279)
                      +.++|
T Consensus       398 ~~a~G  402 (550)
T 1vco_A          398 VIEFA  402 (550)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            99975

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=99.79  E-value=2e-20  Score=184.46  Aligned_cols=175  Identities=16%  Similarity=0.152  Sum_probs=126.3

Q ss_pred             ccccccceeeEEEEeccCCCCCccccCCCHHHHHHHcCceEEecCchHHHH-HHhhhcCceeEEEecCCC----CChHHH
Q 039151           72 DEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAIT-RRLRQDGSLIGVLSTEES----KSDQEL  146 (279)
Q Consensus        72 ~~Es~~~~~~g~iv~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt-~~iR~~G~m~g~i~~~~~----~~~~~~  146 (279)
                      +++|.+|++.++|||...+.|+|||++.+|..|+++++|.++.+||||.+| ++||++|.+.-++..-..    .+-.++
T Consensus       199 ~Lrs~GIqPdilvcRs~~~l~~~~r~KiaLfc~V~~~~VI~i~DvdtiY~vpl~L~~qGl~~~~~~~l~l~~~~~~~~~w  278 (535)
T 3nva_A          199 ELRRIGIQPDFIVGRATLPLDDETRRKIALFTNVKVDHIVSSYDVETSYEVPIILESQKLVSKILSRLKLEDRQVDLTDW  278 (535)
T ss_dssp             HHHHHTCCCSEEEEEESSCCCHHHHHHHHHHTTCCGGGEEEEECCSCGGGHHHHHHHHTHHHHHHHHTTCCCCCCCCHHH
T ss_pred             HHHhCCCCCCEEEEecCCCCCHHHHHhhhhhcCCChhceEecCCCChHHHhHHHHHHCCcHHHHHHHcCCCCCCCCHHHH
Confidence            368999999999999999999999999999999999999999999999999 999999987754321100    000111


Q ss_pred             HHhhcCCCCCCCCcccccccCCeEEecCCCCCCCCCCccCCCCCccEEEEEE-c-Cc---hHHHHHHHHH----CCCeEE
Q 039151          147 LEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHERNSKTYRVIAYD-F-GI---KHNILRRLAS----YGCQII  217 (279)
Q Consensus       147 ~~~~~~~~~~~~~lv~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viD-~-G~---k~~I~r~L~~----~G~~v~  217 (279)
                      .           +++..+...                   .+....+|+++- | ..   ..|+.++|..    .++++.
T Consensus       279 ~-----------~~~~~~~~~-------------------~~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~V~  328 (535)
T 3nva_A          279 I-----------SFVNNIKGI-------------------NSKKTINIALVGKYTKLKDSYISIKEAIYHASAYIGVRPK  328 (535)
T ss_dssp             H-----------HHHHHHHTT-------------------TCCCEEEEEEEESCTTSGGGGHHHHHHHHHHHHHTTCEEE
T ss_pred             H-----------HHHHHhhcc-------------------CCCCeeEEEEEecCcCCchhHHHHHHHHHHHHHHcCCCeE
Confidence            1           111111100                   012346788774 3 22   4566666654    567787


Q ss_pred             EEcCCCC---------hhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151          218 VVPSTWP---------ASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       218 vvp~~~~---------~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~AlG  279 (279)
                      +...+..         .+++  .++|||||+||||++. ....++.++++. .++|+||||+|||+|+.|+|
T Consensus       329 I~wIds~~l~~~~~~~~~~L--~~~DgIIlpGG~G~~~-~~g~i~~ir~a~~~~~PiLGIClG~Qll~va~G  397 (535)
T 3nva_A          329 LIWIESTDLESDTKNLNEIL--GNVNGIIVLPGFGSRG-AEGKIKAIKYAREHNIPFLGICFGFQLSIVEFA  397 (535)
T ss_dssp             EEEEEGGGGCCSSSCCTTTT--TSCSEEEECCCCSSTT-HHHHHHHHHHHHHHTCCEEEETHHHHHHHHHHH
T ss_pred             EEEecchhccccccchhhhc--cCCCEEEECCCCCCcc-HHHHHHHHHHHHHcCCcEEEECcchhHHHHHhh
Confidence            7643321         1222  3799999999999985 356788899888 69999999999999999986

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=99.75  E-value=3.7e-18  Score=147.29  Aligned_cols=88  Identities=28%  Similarity=0.552  Sum_probs=71.7

Q ss_pred             cEEEEEEcC--chHHHHHHHHHCCCeEEEEcCCCChhhhhc----cCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEe
Q 039151          192 YRVIAYDFG--IKHNILRRLASYGCQIIVVPSTWPASETLK----LKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVF  265 (279)
Q Consensus       192 ~~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~----~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PIL  265 (279)
                      ++|++||++  ++++|.++|+++|+++++++++.+.+++.+    .+.+++|||||||+|.+.....+.++.+..++|+|
T Consensus         1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~~~~~~~~~~l~~~~~~~~Pil   80 (192)
T 1i1q_B            1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPII   80 (192)
T ss_dssp             CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCEE
T ss_pred             CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCcCchhCchHHHHHHHHhcCCCEE
Confidence            479999985  589999999999999999998866666532    14557999999999987655555666433689999


Q ss_pred             eecHHHHHHHHHcC
Q 039151          266 GICMGHQLLGQALG  279 (279)
Q Consensus       266 GICLGhQLLa~AlG  279 (279)
                      |||+|||+|+.|+|
T Consensus        81 GIC~G~Qll~~~~G   94 (192)
T 1i1q_B           81 GICLGHQAIVEAYG   94 (192)
T ss_dssp             EETHHHHHHHHHTS
T ss_pred             EECcChHHHHHHhC
Confidence            99999999999987

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=99.72  E-value=3.2e-17  Score=140.70  Aligned_cols=87  Identities=31%  Similarity=0.606  Sum_probs=75.1

Q ss_pred             cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151          192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC  268 (279)
Q Consensus       192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC  268 (279)
                      |+|++||+|.  ..++.++|++.|+++++++.+.+.+++...++|||||+||| +|.+.....+.++++. .++|+||||
T Consensus         1 mmi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dglil~Gg~-~~~~~~~~~~~i~~~~~~~~PilGIC   79 (189)
T 1wl8_A            1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGP-SLENTGNCEKVLEHYDEFNVPILGIC   79 (189)
T ss_dssp             CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTCCHHHHHHTCCSEEEECCCS-CTTCCTTHHHHHHTGGGTCSCEEEET
T ss_pred             CeEEEEECCCchHHHHHHHHHHCCCeEEEEECCCChHHhcccCCCEEEECCCC-ChhhhhhHHHHHHHHhhCCCeEEEEc
Confidence            4699999975  78999999999999999998766667655579999999999 8877555678888775 689999999


Q ss_pred             HHHHHHHHHcC
Q 039151          269 MGHQLLGQALG  279 (279)
Q Consensus       269 LGhQLLa~AlG  279 (279)
                      +|||+|+.|+|
T Consensus        80 ~G~Q~l~~~~g   90 (189)
T 1wl8_A           80 LGHQLIAKFFG   90 (189)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            99999999987

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=99.71  E-value=2.9e-17  Score=142.06  Aligned_cols=86  Identities=28%  Similarity=0.538  Sum_probs=71.6

Q ss_pred             EEEEEcC--chHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCC---hHHHHHHHHHHCCCCEeee
Q 039151          194 VIAYDFG--IKHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAV---PYAVAIVKELLGKVPVFGI  267 (279)
Q Consensus       194 I~viD~G--~k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~---~~~i~~Ir~~~~~~PILGI  267 (279)
                      |+|||++  ...++.++|++.|+++++++.+ .+.+++...++|||||||||++|.+.   ....+.++++..++|+|||
T Consensus         4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dglil~gG~~~~~~~~~~~~~~~~i~~~~~~~PvLGI   83 (195)
T 1qdl_B            4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGV   83 (195)
T ss_dssp             EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEEEE
T ss_pred             EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCCCCEEEECCCCCChhhhhhhhHHHHHHHHhcCCCcEEEE
Confidence            9999985  4788999999999999999976 45556655579999999999998863   2345778874368999999


Q ss_pred             cHHHHHHHHHcC
Q 039151          268 CMGHQLLGQALG  279 (279)
Q Consensus       268 CLGhQLLa~AlG  279 (279)
                      |+|||+|+.++|
T Consensus        84 C~G~QlL~~~~g   95 (195)
T 1qdl_B           84 CLGHQAIGYAFG   95 (195)
T ss_dssp             THHHHHHHHHTT
T ss_pred             ehHHHHHHHHhC
Confidence            999999999987

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=99.66  E-value=2.4e-16  Score=159.53  Aligned_cols=87  Identities=28%  Similarity=0.426  Sum_probs=74.3

Q ss_pred             CccEEEEEEcC--chHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh-----HHHHHHHHHH-CC
Q 039151          190 KTYRVIAYDFG--IKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP-----YAVAIVKELL-GK  261 (279)
Q Consensus       190 ~~~~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~-----~~i~~Ir~~~-~~  261 (279)
                      .+++|++||+|  +++++.++|.+.|+++++++++.+.+ +  .++||||||||||+|.+..     ...++|++++ .+
T Consensus       445 ~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~~~-~--~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~~  521 (645)
T 3r75_A          445 SGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAVD-L--ARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEG  521 (645)
T ss_dssp             TTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCCCC-G--GGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCccc-c--cCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHHHCC
Confidence            45799999997  58999999999999999999876532 2  4799999999999998764     2456778777 69


Q ss_pred             CCEeeecHHHHHHHHHcC
Q 039151          262 VPVFGICMGHQLLGQALG  279 (279)
Q Consensus       262 ~PILGICLGhQLLa~AlG  279 (279)
                      +|+||||||||+|+.++|
T Consensus       522 iPiLGIClG~QlLa~alG  539 (645)
T 3r75_A          522 KPFMAVCLSHQILNAILG  539 (645)
T ss_dssp             CCEEEETHHHHHHHHHTT
T ss_pred             CCEEEECHHHHHHHHHhC
Confidence            999999999999999997

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=99.65  E-value=2.7e-16  Score=156.72  Aligned_cols=88  Identities=23%  Similarity=0.396  Sum_probs=74.2

Q ss_pred             cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh--H-HHHHHHHHH-CCCCEe
Q 039151          192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP--Y-AVAIVKELL-GKVPVF  265 (279)
Q Consensus       192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~--~-~i~~Ir~~~-~~~PIL  265 (279)
                      .+|+|||||.  +++|.|.|++.|+.++++|++.+.+++...+||||||||||+++.+..  . ....++.+. .++|+|
T Consensus         8 ~~IlilD~Gs~~~~~I~r~lre~Gv~~eiv~~~~~~~~i~~~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~~g~PvL   87 (556)
T 3uow_A            8 DKILVLNFGSQYFHLIVKRLNNIKIFSETKDYGVELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPIF   87 (556)
T ss_dssp             CEEEEEESSCTTHHHHHHHHHHTTCCEEEEETTCCGGGTTTSCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHHTTCCEE
T ss_pred             CEEEEEECCCccHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCcccccCCcchhHHHHHHhhhcCCCEE
Confidence            5899999984  789999999999999999998888888777899999999999986532  1 123444455 599999


Q ss_pred             eecHHHHHHHHHcC
Q 039151          266 GICMGHQLLGQALG  279 (279)
Q Consensus       266 GICLGhQLLa~AlG  279 (279)
                      |||+|||+|+.++|
T Consensus        88 GIC~G~QlLa~~lG  101 (556)
T 3uow_A           88 GICYGMQEIAVQMN  101 (556)
T ss_dssp             EETHHHHHHHHHTT
T ss_pred             EECHHHHHHHHHhC
Confidence            99999999999987

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=99.65  E-value=7.1e-17  Score=140.44  Aligned_cols=81  Identities=22%  Similarity=0.415  Sum_probs=65.0

Q ss_pred             EEEEEEcCch--HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHH---HHHHHHH-CCCCEee
Q 039151          193 RVIAYDFGIK--HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAV---AIVKELL-GKVPVFG  266 (279)
Q Consensus       193 ~I~viD~G~k--~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i---~~Ir~~~-~~~PILG  266 (279)
                      +|+|||||++  +||.|+|+++|++++++.   +++++.  ++|+||| +|||+|.+....+   ..++.+. .++|+||
T Consensus         4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~---~~~~l~--~~D~lil-PG~g~~~~~~~~~~~~~~i~~~~~~~~PvlG   77 (211)
T 4gud_A            4 NVVIIDTGCANISSVKFAIERLGYAVTISR---DPQVVL--AADKLFL-PGVGTASEAMKNLTERDLIELVKRVEKPLLG   77 (211)
T ss_dssp             CEEEECCCCTTHHHHHHHHHHTTCCEEEEC---CHHHHH--HCSEEEE-CCCSCHHHHHHHHHHTTCHHHHHHCCSCEEE
T ss_pred             EEEEEECCCChHHHHHHHHHHCCCEEEEEC---CHHHHh--CCCEEEE-CCCCCHHHHHHHHHhcChHHHHHHcCCCEEE
Confidence            6999999985  899999999999999874   356664  5899999 5888886543222   2456666 6999999


Q ss_pred             ecHHHHHHHHHcC
Q 039151          267 ICMGHQLLGQALG  279 (279)
Q Consensus       267 ICLGhQLLa~AlG  279 (279)
                      ||+|||+|+.++|
T Consensus        78 IClG~QlL~~~~g   90 (211)
T 4gud_A           78 ICLGMQLLGKLSE   90 (211)
T ss_dssp             ETHHHHTTSSEEC
T ss_pred             EchhHhHHHHHhC
Confidence            9999999998765

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=99.65  E-value=8.7e-17  Score=142.26  Aligned_cols=87  Identities=26%  Similarity=0.334  Sum_probs=64.3

Q ss_pred             cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151          192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC  268 (279)
Q Consensus       192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC  268 (279)
                      .+|++||+|.  ..++.++|+++|+++.++|.+.+.+++...++|||||+|||+++.+.. .....+.++ .++|+||||
T Consensus        25 ~~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~~~~~~~~l~~~~~dglil~Gg~~~~~~~~-~~~~~~~~~~~~~PilGIC  103 (218)
T 2vpi_A           25 GAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAED-APWFDPAIFTIGKPVLGIC  103 (218)
T ss_dssp             TCEEEEECSTTTTHHHHHHHHHTTCCEEEECTTCCHHHHHHHTCSEEEEEC----------CCCCCGGGGTSSCCEEEET
T ss_pred             CeEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChHHHhhcCCCEEEECCCCccccccc-chhHHHHHHHcCCCEEEEc
Confidence            5899999976  467999999999999999988777777656799999999998875321 111223344 589999999


Q ss_pred             HHHHHHHHHcC
Q 039151          269 MGHQLLGQALG  279 (279)
Q Consensus       269 LGhQLLa~AlG  279 (279)
                      +|||+|+.++|
T Consensus       104 ~G~Qll~~~~G  114 (218)
T 2vpi_A          104 YGMQMMNKVFG  114 (218)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhC
Confidence            99999999987

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=99.64  E-value=2.6e-16  Score=138.27  Aligned_cols=87  Identities=26%  Similarity=0.437  Sum_probs=70.7

Q ss_pred             ccEEEEEEcC--chHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCC-CCCCCCChHHHHHHHHHH-CCCCEee
Q 039151          191 TYRVIAYDFG--IKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNG-PGDPSAVPYAVAIVKELL-GKVPVFG  266 (279)
Q Consensus       191 ~~~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgG-PGdp~~~~~~i~~Ir~~~-~~~PILG  266 (279)
                      .+||+++|++  +..++.++|+++|+++.++|++.+.+++.  ++|||||+|| |+++.+........+.+. .++|+||
T Consensus        13 ~~~i~~id~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~l~--~~DglIl~GG~p~~~~~~~~~~~l~~~~~~~~~PiLG   90 (212)
T 2a9v_A           13 MLKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSELD--GLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILG   90 (212)
T ss_dssp             CCBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTSCGGGGT--TCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCEEE
T ss_pred             cceEEEEeCCCccHHHHHHHHHHCCCEEEEEeCCCCHHHHh--CCCEEEECCCCCCCCcccccchhHHHHHHhCCCCEEE
Confidence            4689999996  47899999999999999999876666664  5999999999 999876422222334444 6899999


Q ss_pred             ecHHHHHHHHHcC
Q 039151          267 ICMGHQLLGQALG  279 (279)
Q Consensus       267 ICLGhQLLa~AlG  279 (279)
                      ||+|||+|+.++|
T Consensus        91 IC~G~Qll~~~lG  103 (212)
T 2a9v_A           91 ICVGAQFIALHFG  103 (212)
T ss_dssp             ETHHHHHHHHHTT
T ss_pred             EChHHHHHHHHhC
Confidence            9999999999987

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=99.63  E-value=1.9e-16  Score=156.72  Aligned_cols=87  Identities=26%  Similarity=0.486  Sum_probs=68.6

Q ss_pred             cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151          192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC  268 (279)
Q Consensus       192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC  268 (279)
                      .+|+|||||.  .++|.|.|++.|+.++++|++.+.+++.+.+||||||||||+++.+. ......+.++ .++|+||||
T Consensus        11 ~~I~IlD~g~~~~~~i~r~lr~~Gv~~~i~p~~~~~~~i~~~~~dgIILsGGp~sv~~~-~~~~~~~~~~~~~~PvLGIC   89 (527)
T 3tqi_A           11 HRILILDFGSQYAQLIARRVREIGVYCELMPCDIDEETIRDFNPHGIILSGGPETVTLS-HTLRAPAFIFEIGCPVLGIC   89 (527)
T ss_dssp             SEEEEEECSCTTHHHHHHHHHHHTCEEEEEETTCCSSSSTTTCCSEEEECCCCC----------CCCSTTTSSSCEEEET
T ss_pred             CeEEEEECCCccHHHHHHHHHHCCCeEEEEECCCCHHHHHhcCCCEEEECCcCcccccC-CChhhHHHHHhcCCCEEEEC
Confidence            4899999987  46799999999999999999888888877789999999999988753 2223334445 589999999


Q ss_pred             HHHHHHHHHcC
Q 039151          269 MGHQLLGQALG  279 (279)
Q Consensus       269 LGhQLLa~AlG  279 (279)
                      +|||+|+.++|
T Consensus        90 ~G~Qlla~~lG  100 (527)
T 3tqi_A           90 YGMQTMAYQLG  100 (527)
T ss_dssp             HHHHHHHHHSS
T ss_pred             hHHHHHHHHcC
Confidence            99999999987

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=99.61  E-value=3.6e-16  Score=153.84  Aligned_cols=86  Identities=34%  Similarity=0.560  Sum_probs=71.1

Q ss_pred             EEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecH
Q 039151          193 RVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICM  269 (279)
Q Consensus       193 ~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICL  269 (279)
                      +|+|||||.  .++|.|.|++.|+.++++|++.+.+++.+.+||||||||||+++.+... ....+.++ .++|+||||+
T Consensus         1 mi~ilD~g~~~~~~i~r~l~~~G~~~~i~p~~~~~~~i~~~~~dgiIlsGGp~s~~~~~~-~~~~~~~~~~~~PvLGIC~   79 (503)
T 2ywb_A            1 MVLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDA-PRPDPRLFSSGLPLLGICY   79 (503)
T ss_dssp             CEEEEESSCTTHHHHHHHHHTTTCCEEEEETTCCHHHHHTTCCSEEEECCCSSCSSCTTC-CCCCGGGGCSSCCEEEETH
T ss_pred             CEEEEECCCcHHHHHHHHHHHCCCEEEEEECCCCHHHHHhcCCCEEEECCCCchhccCCC-cchHHHHHhCCCCEEEECH
Confidence            489999987  4669999999999999999988888887778999999999998865321 11123445 5899999999


Q ss_pred             HHHHHHHHcC
Q 039151          270 GHQLLGQALG  279 (279)
Q Consensus       270 GhQLLa~AlG  279 (279)
                      |||+|+.++|
T Consensus        80 G~Qlla~~~G   89 (503)
T 2ywb_A           80 GMQLLAQELG   89 (503)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHHHHhC
Confidence            9999999987

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=99.61  E-value=4.6e-16  Score=153.93  Aligned_cols=87  Identities=25%  Similarity=0.503  Sum_probs=72.0

Q ss_pred             cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151          192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC  268 (279)
Q Consensus       192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC  268 (279)
                      .+|+|+|||.  .++|.|.|++.|+.++++|++.+.+++.+.+||||||||||+++.+.. .....+.++ .++|+||||
T Consensus         8 ~~IlIlD~g~~~~~~i~r~lr~~G~~~~i~p~~~~~~~i~~~~~dgiILsGGp~s~~~~~-~~~~~~~~~~~g~PvLGIC   86 (525)
T 1gpm_A            8 HRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEEN-SPRAPQYVFEAGVPVFGVC   86 (525)
T ss_dssp             SEEEEEECSCTTHHHHHHHHHHTTCEEEEEESCCCHHHHHHHCCSEEEECCCSSCTTSTT-CCCCCGGGGTSSSCEEEET
T ss_pred             CEEEEEECCCccHHHHHHHHHHCCCEEEEEECCCCHHHHhccCCCEEEECCcCccccccC-CcchHHHHHHCCCCEEEEC
Confidence            5899999987  456999999999999999998888888777899999999999886532 111123444 589999999


Q ss_pred             HHHHHHHHHcC
Q 039151          269 MGHQLLGQALG  279 (279)
Q Consensus       269 LGhQLLa~AlG  279 (279)
                      +|||+|+.++|
T Consensus        87 ~G~Qlla~~~G   97 (525)
T 1gpm_A           87 YGMQTMAMQLG   97 (525)
T ss_dssp             HHHHHHHHHHT
T ss_pred             hHHHHHHHHcC
Confidence            99999999987

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=99.56  E-value=1e-15  Score=156.21  Aligned_cols=88  Identities=25%  Similarity=0.311  Sum_probs=65.8

Q ss_pred             ccEEEEEEcCchH--HHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151          191 TYRVIAYDFGIKH--NILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI  267 (279)
Q Consensus       191 ~~~I~viD~G~k~--~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI  267 (279)
                      +.+|+|+|||.+.  .|.|.|+++|+.++++|++.+.+++...+||||||||||+++.+... ....+.++ .++|+|||
T Consensus        29 ~~~I~VLDfg~q~~~liar~lre~Gv~~~ivp~~~~~e~i~~~~~dGIILsGGp~s~~~~~~-~~~~~~i~~~g~PvLGI  107 (697)
T 2vxo_A           29 EGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDA-PWFDPAIFTIGKPVLGI  107 (697)
T ss_dssp             CCCEEEEEEC--CHHHHHHHHHHTTCCEEEEETTCCHHHHHHHTCSEEEEEECC-------C-CCCCGGGTTSSCCEEEE
T ss_pred             CCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCHHHHhhcCCCEEEECCCCCcccCccc-hhHHHHHHhCCCCEEEE
Confidence            3579999999754  58899999999999999998888887678999999999998764210 00112334 58999999


Q ss_pred             cHHHHHHHHHcC
Q 039151          268 CMGHQLLGQALG  279 (279)
Q Consensus       268 CLGhQLLa~AlG  279 (279)
                      |+|||+|+.++|
T Consensus       108 C~G~QlLa~~lG  119 (697)
T 2vxo_A          108 CYGMQMMNKVFG  119 (697)
T ss_dssp             EHHHHHHHHHTT
T ss_pred             CHHHHHHHHHhC
Confidence            999999999987

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=99.55  E-value=1.4e-14  Score=129.01  Aligned_cols=86  Identities=21%  Similarity=0.316  Sum_probs=67.8

Q ss_pred             cEEEEEEcCc---hHHHHHHHHHCCCeEEEEcCCCC---hhhhhccCCCeEEEcCCCCCCCCC---------hHHHHHHH
Q 039151          192 YRVIAYDFGI---KHNILRRLASYGCQIIVVPSTWP---ASETLKLKPDGVLFSNGPGDPSAV---------PYAVAIVK  256 (279)
Q Consensus       192 ~~I~viD~G~---k~~I~r~L~~~G~~v~vvp~~~~---~~~i~~~~~DgIiLSgGPGdp~~~---------~~~i~~Ir  256 (279)
                      |||++|....   ...+.++|.++|+++.+++....   ++++  .++|+|||||||++|.+.         ..+.+.|+
T Consensus         1 m~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~~~--~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~   78 (236)
T 3l7n_A            1 MRIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPKDI--DDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQ   78 (236)
T ss_dssp             CEEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCSCG--GGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCCCc--cccCEEEECCCCCCcccccccCcccchHHHHHHHH
Confidence            5788888632   46788999999999999875321   1122  379999999999998532         22678899


Q ss_pred             HHH-CCCCEeeecHHHHHHHHHcC
Q 039151          257 ELL-GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       257 ~~~-~~~PILGICLGhQLLa~AlG  279 (279)
                      +++ .++|+||||+|||+|+.++|
T Consensus        79 ~~~~~~~PvLGIClG~QlL~~~~G  102 (236)
T 3l7n_A           79 KAAKSEKIIVGVCLGAQLMGVAYG  102 (236)
T ss_dssp             HHHHTTCEEEEETHHHHHHHHHTT
T ss_pred             HHHHcCCCEEEEchHHHHHHHHhC
Confidence            988 79999999999999999987

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=99.50  E-value=2.2e-14  Score=129.17  Aligned_cols=77  Identities=30%  Similarity=0.572  Sum_probs=62.0

Q ss_pred             hHHHHHHHHHCCCeEEEEcCCCChh--hhhccCCCeEEEcCCCC-CCCC----------------ChHHHHHHHHHH-CC
Q 039151          202 KHNILRRLASYGCQIIVVPSTWPAS--ETLKLKPDGVLFSNGPG-DPSA----------------VPYAVAIVKELL-GK  261 (279)
Q Consensus       202 k~~I~r~L~~~G~~v~vvp~~~~~~--~i~~~~~DgIiLSgGPG-dp~~----------------~~~~i~~Ir~~~-~~  261 (279)
                      ..+++++|++.|+.+.++|+..+.+  +++ .++|||||+|||+ +|..                ...+++.|++++ .+
T Consensus        30 ~~~~~~~l~~aG~~pv~lp~~~~~~~~~~l-~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~  108 (254)
T 3fij_A           30 QQRYVDAIQKVGGFPIALPIDDPSTAVQAI-SLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAG  108 (254)
T ss_dssp             CHHHHHHHHHHTCEEEEECCCCGGGHHHHH-HTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHCCCEEEEEeCCCchHHHHHH-hhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcC
Confidence            5678999999999999999865533  222 3799999999997 4421                123778899988 79


Q ss_pred             CCEeeecHHHHHHHHHcC
Q 039151          262 VPVFGICMGHQLLGQALG  279 (279)
Q Consensus       262 ~PILGICLGhQLLa~AlG  279 (279)
                      +|+||||+|||+|+.|+|
T Consensus       109 ~PiLGIC~G~Qll~~a~G  126 (254)
T 3fij_A          109 KPIFAICRGMQLVNVALG  126 (254)
T ss_dssp             CCEEEETHHHHHHHHHTT
T ss_pred             CCEEEECHHHHHHHHHhC
Confidence            999999999999999987

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=99.50  E-value=5.8e-15  Score=135.84  Aligned_cols=88  Identities=17%  Similarity=0.275  Sum_probs=66.4

Q ss_pred             CccEEEEE-Ec-CchH---HHHHHHHHCCCe----EEEEcCCC----------Chhh------hhccCCCeEEEcCCCCC
Q 039151          190 KTYRVIAY-DF-GIKH---NILRRLASYGCQ----IIVVPSTW----------PASE------TLKLKPDGVLFSNGPGD  244 (279)
Q Consensus       190 ~~~~I~vi-D~-G~k~---~I~r~L~~~G~~----v~vvp~~~----------~~~~------i~~~~~DgIiLSgGPGd  244 (279)
                      .+++|++| || |.+.   ++.++|+++|+.    +.++..+.          +.++      .. .++|||||+||||+
T Consensus        24 ~~~~Iavv~d~~~~~~s~~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~dgiil~GG~~~  102 (289)
T 2v4u_A           24 KICSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKL-CKADGILVPGGFGI  102 (289)
T ss_dssp             EEEEEEEEESCSSCCGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHH-HHCSEEEECSCCSS
T ss_pred             CceEEEEEecCcCCCccHHHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHH-hhCCEEEecCCCCc
Confidence            35799999 99 8755   899999988763    33332221          1121      11 36899999999998


Q ss_pred             CCCChHHHHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151          245 PSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       245 p~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~AlG  279 (279)
                      +.. ...++.+++++ .++|+||||+|||+|+.|+|
T Consensus       103 ~~~-~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~G  137 (289)
T 2v4u_A          103 RGT-LGKLQAISWARTKKIPFLGVXLGMQLAVIEFA  137 (289)
T ss_dssp             TTH-HHHHHHHHHHHHTTCCEEEETHHHHHHHHHHH
T ss_pred             hhH-HHHHHHHHHHHHcCCcEEEECccHHHHHHHHh
Confidence            553 56788899888 68999999999999999986

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=99.50  E-value=1.4e-14  Score=123.74  Aligned_cols=81  Identities=16%  Similarity=0.241  Sum_probs=62.5

Q ss_pred             cEEEEEEc-CchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh----HHHHHHHHHHCCCCEee
Q 039151          192 YRVIAYDF-GIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP----YAVAIVKELLGKVPVFG  266 (279)
Q Consensus       192 ~~I~viD~-G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~----~~i~~Ir~~~~~~PILG  266 (279)
                      ++|+|+|+ |...++.++|++.|+++.+++.   .+++  .++|||||+|||+++.+..    ...+.++  -.++|+||
T Consensus         1 m~i~vl~~~g~~~~~~~~l~~~G~~~~~~~~---~~~~--~~~dglil~GG~~~~~~~~~~~~~~~~~i~--~~~~PilG   73 (186)
T 2ywj_A            1 MIIGVLAIQGDVEEHEEAIKKAGYEAKKVKR---VEDL--EGIDALIIPGGESTAIGKLMKKYGLLEKIK--NSNLPILG   73 (186)
T ss_dssp             CEEEEECSSSCCHHHHHHHHHTTSEEEEECS---GGGG--TTCSEEEECCSCHHHHHHHHHHTTHHHHHH--TCCCCEEE
T ss_pred             CEEEEEecCcchHHHHHHHHHCCCEEEEECC---hHHh--ccCCEEEECCCCchhhhhhhhccCHHHHHH--hcCCcEEE
Confidence            57999998 7777888999999999999874   2344  3689999999998765311    1223333  25899999


Q ss_pred             ecHHHHHHHHHcC
Q 039151          267 ICMGHQLLGQALG  279 (279)
Q Consensus       267 ICLGhQLLa~AlG  279 (279)
                      ||+|||+|+.++|
T Consensus        74 IC~G~Qll~~~~g   86 (186)
T 2ywj_A           74 TCAGMVLLSKGTG   86 (186)
T ss_dssp             ETHHHHHHSSCCS
T ss_pred             ECHHHHHHHHHhC
Confidence            9999999999876

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=99.50  E-value=1.5e-14  Score=125.04  Aligned_cols=81  Identities=22%  Similarity=0.247  Sum_probs=65.4

Q ss_pred             cEEEEEEcC--chHHHHHHHHHCC-----CeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC-h-----HHHHHHHHH
Q 039151          192 YRVIAYDFG--IKHNILRRLASYG-----CQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV-P-----YAVAIVKEL  258 (279)
Q Consensus       192 ~~I~viD~G--~k~~I~r~L~~~G-----~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~-~-----~~i~~Ir~~  258 (279)
                      |+|+|||+|  ...++.++|++.|     +++++++...   +   .++|+||| +|||++.+. +     ...+.|+++
T Consensus         1 m~I~iid~~~g~~~s~~~~l~~~G~~~~~~~~~~~~~~~---~---~~~dglil-pG~g~~~~~~~~l~~~~~~~~i~~~   73 (201)
T 1gpw_B            1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPR---N---DLYDLLFI-PGVGHFGEGMRRLRENDLIDFVRKH   73 (201)
T ss_dssp             CEEEEECCSSSCCHHHHHHHHHHSTTBSSCEEEEECSCC---S---SCCSEEEE-CCCSCSHHHHHHHHHTTCHHHHHHH
T ss_pred             CEEEEEecCCchHHHHHHHHHHcCCCCCceEEEEECCCc---c---cCCCEEEE-CCCCcHHHHHHHHHhhCHHHHHHHH
Confidence            589999997  5789999999999     9999987532   2   47999999 567887532 1     145778888


Q ss_pred             H-CCCCEeeecHHHHHHHHHcC
Q 039151          259 L-GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       259 ~-~~~PILGICLGhQLLa~AlG  279 (279)
                      + .++|+||||+|||+|+.++|
T Consensus        74 ~~~~~PilGIC~G~Qll~~~~g   95 (201)
T 1gpw_B           74 VEDERYVVGVCLGMQLLFEESE   95 (201)
T ss_dssp             HHTTCEEEEETHHHHTTSSEET
T ss_pred             HHcCCeEEEEChhHHHHHHhhc
Confidence            7 78999999999999999874

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=99.50  E-value=5.7e-14  Score=125.54  Aligned_cols=88  Identities=20%  Similarity=0.316  Sum_probs=68.7

Q ss_pred             ccEEEEEEc---CchHHHHHHHHHCCCeEEEEcCCCChhhhhc--cCCCeEEEcCCCCCCCCC---h---HHHHHHHHHH
Q 039151          191 TYRVIAYDF---GIKHNILRRLASYGCQIIVVPSTWPASETLK--LKPDGVLFSNGPGDPSAV---P---YAVAIVKELL  259 (279)
Q Consensus       191 ~~~I~viD~---G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~--~~~DgIiLSgGPGdp~~~---~---~~i~~Ir~~~  259 (279)
                      ..||++|..   +-..++.+.|+..|+++.+++.+.. +++.+  .++|||||+|||+++.+.   +   ...+.|++++
T Consensus        12 ~~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~-~~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~~~~   90 (239)
T 1o1y_A           12 HVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKG-EKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEIL   90 (239)
T ss_dssp             CCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGT-CCCSSCGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHH
T ss_pred             eeEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCc-cccccchhcCCEEEECCCCccccCCccChhHHHHHHHHHHHH
Confidence            468988875   3367889999999999998876421 11111  379999999999888653   2   4678888887


Q ss_pred             -CCCCEeeecHHHHHHHHHcC
Q 039151          260 -GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       260 -~~~PILGICLGhQLLa~AlG  279 (279)
                       .++|+||||+|||+|+.++|
T Consensus        91 ~~~~PiLGIC~G~QlL~~alG  111 (239)
T 1o1y_A           91 KKEIPFLGICLGSQMLAKVLG  111 (239)
T ss_dssp             HHTCCEEEETHHHHHHHHHTT
T ss_pred             HCCCCEEEEchhHHHHHHHcC
Confidence             68999999999999999987

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=99.46  E-value=2.2e-13  Score=123.19  Aligned_cols=86  Identities=26%  Similarity=0.385  Sum_probs=68.5

Q ss_pred             cEEEEEEc---CchHHHHHHHHHCCCeEEEEcCCC---ChhhhhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHH-C
Q 039151          192 YRVIAYDF---GIKHNILRRLASYGCQIIVVPSTW---PASETLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELL-G  260 (279)
Q Consensus       192 ~~I~viD~---G~k~~I~r~L~~~G~~v~vvp~~~---~~~~i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~-~  260 (279)
                      ++|++|+.   .-..++.++|+++|+++++++.+.   ..+++  .++|+|||+|||+++.+.    ...++.|++++ .
T Consensus         4 ~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~~~--~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~   81 (250)
T 3m3p_A            4 KPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEI--RDCSGLAMMGGPMSANDDLPWMPTLLALIRDAVAQ   81 (250)
T ss_dssp             CCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSCG--GGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcCcc--ccCCEEEECCCCCcccccchHHHHHHHHHHHHHHc
Confidence            47888874   347889999999999999997532   12223  379999999999987642    34567888887 6


Q ss_pred             CCCEeeecHHHHHHHHHcC
Q 039151          261 KVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       261 ~~PILGICLGhQLLa~AlG  279 (279)
                      ++|+||||+|||+|+.++|
T Consensus        82 ~~PvlGIC~G~Qll~~~lG  100 (250)
T 3m3p_A           82 RVPVIGHCLGGQLLAKAMG  100 (250)
T ss_dssp             TCCEEEETHHHHHHHHHTT
T ss_pred             CCCEEEECHHHHHHHHHhC
Confidence            9999999999999999997

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=99.46  E-value=3.6e-14  Score=122.76  Aligned_cols=80  Identities=24%  Similarity=0.406  Sum_probs=65.0

Q ss_pred             cEEEEEEcC--chHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC------hHHHHHHHHHH-CCC
Q 039151          192 YRVIAYDFG--IKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV------PYAVAIVKELL-GKV  262 (279)
Q Consensus       192 ~~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~------~~~i~~Ir~~~-~~~  262 (279)
                      ++|+++|+|  ...++.+.|++.|+++++++..   +++  .++|+||| +|||+|...      ....+.|++++ .++
T Consensus         3 ~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~~---~~l--~~~d~lil-~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~   76 (200)
T 1ka9_H            3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQDP---KAH--EEADLLVL-PGQGHFGQVMRAFQESGFVERVRRHLERGL   76 (200)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHTTCEEEEESST---TSC--SSCSEEEE-CCCSCHHHHHHTTSSSCTHHHHHHHHHTTC
T ss_pred             cEEEEEeCCCccHHHHHHHHHHCCCeEEEecCh---HHc--ccCCEEEE-CCCCcHHHHHHHHHhcCHHHHHHHHHHcCC
Confidence            589999997  4788999999999999999743   233  37999999 677876421      23578888887 799


Q ss_pred             CEeeecHHHHHHHHH
Q 039151          263 PVFGICMGHQLLGQA  277 (279)
Q Consensus       263 PILGICLGhQLLa~A  277 (279)
                      |+||||+|||+|+.+
T Consensus        77 PilGIC~G~Qll~~~   91 (200)
T 1ka9_H           77 PFLGICVGMQVLYEG   91 (200)
T ss_dssp             CEEECTHHHHTTSSE
T ss_pred             eEEEEcHHHHHHHHh
Confidence            999999999999988

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=99.43  E-value=2.6e-13  Score=126.25  Aligned_cols=77  Identities=19%  Similarity=0.338  Sum_probs=59.9

Q ss_pred             HHHHHHHHHCCCeEEEEcCCCChhhhhc--cCCCeEEEcCCCCCCCCCh------HHHHHHHHHH-C--CCCEeeecHHH
Q 039151          203 HNILRRLASYGCQIIVVPSTWPASETLK--LKPDGVLFSNGPGDPSAVP------YAVAIVKELL-G--KVPVFGICMGH  271 (279)
Q Consensus       203 ~~I~r~L~~~G~~v~vvp~~~~~~~i~~--~~~DgIiLSgGPGdp~~~~------~~i~~Ir~~~-~--~~PILGICLGh  271 (279)
                      .++.++|++.|++++++|.+.+.+++.+  .++|||||+|||+++....      ..++.+++.. .  ++|+||||+||
T Consensus        55 ~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dglil~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~  134 (315)
T 1l9x_A           55 ASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGF  134 (315)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHH
T ss_pred             HHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCEEEEeCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHH
Confidence            4688999999999999998766555533  2799999999999976541      2344444444 2  59999999999


Q ss_pred             HHHHHHcC
Q 039151          272 QLLGQALG  279 (279)
Q Consensus       272 QLLa~AlG  279 (279)
                      |+|+.|+|
T Consensus       135 Qll~~a~G  142 (315)
T 1l9x_A          135 EELSLLIS  142 (315)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhC
Confidence            99999986

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=99.41  E-value=1.3e-13  Score=118.60  Aligned_cols=83  Identities=17%  Similarity=0.342  Sum_probs=65.2

Q ss_pred             cEEEEEEc-CchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHH-CCCCEe
Q 039151          192 YRVIAYDF-GIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELL-GKVPVF  265 (279)
Q Consensus       192 ~~I~viD~-G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~-~~~PIL  265 (279)
                      +||+++|+ |...++++.|++.|+++.+++.   .+++  .++|+|||+|||+++.+.    ....+.|++++ .++|+|
T Consensus         2 m~I~il~~~~~~~~~~~~l~~~g~~~~~~~~---~~~l--~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pil   76 (196)
T 2nv0_A            2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKR---PEQL--NEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMF   76 (196)
T ss_dssp             CEEEEECSSSCCHHHHHHHHHTTCEEEEECS---GGGG--GGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEE
T ss_pred             cEEEEEEccCCcHHHHHHHHHCCCEEEEeCC---hHHH--hhCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEE
Confidence            58999998 4455667999999999988864   3344  369999999998765431    12267888887 799999


Q ss_pred             eecHHHHHHHHHcC
Q 039151          266 GICMGHQLLGQALG  279 (279)
Q Consensus       266 GICLGhQLLa~AlG  279 (279)
                      |||+|||+|+.++|
T Consensus        77 gIC~G~q~l~~~~g   90 (196)
T 2nv0_A           77 GTCAGLIILAKEIA   90 (196)
T ss_dssp             EETHHHHHHSBCCC
T ss_pred             EECHHHHHHHHHhc
Confidence            99999999999876

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=99.40  E-value=1.1e-13  Score=121.71  Aligned_cols=84  Identities=17%  Similarity=0.314  Sum_probs=65.6

Q ss_pred             ccEEEEEEcCc-hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHH-CCCCE
Q 039151          191 TYRVIAYDFGI-KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELL-GKVPV  264 (279)
Q Consensus       191 ~~~I~viD~G~-k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~-~~~PI  264 (279)
                      +++|+++|+.. ..++++.|++.|+++.+++.   .+++  .++|+|||+|||+++.+.    ....+.|++++ .++|+
T Consensus        23 ~~~I~il~~~~~~~~~~~~l~~~G~~~~~~~~---~~~l--~~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~Pi   97 (219)
T 1q7r_A           23 NMKIGVLGLQGAVREHVRAIEACGAEAVIVKK---SEQL--EGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPM   97 (219)
T ss_dssp             CCEEEEESCGGGCHHHHHHHHHTTCEEEEECS---GGGG--TTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCE
T ss_pred             CCEEEEEeCCCCcHHHHHHHHHCCCEEEEECC---HHHH--hhCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeE
Confidence            57999999843 44567899999999999875   2344  379999999998755321    12367888887 79999


Q ss_pred             eeecHHHHHHHHHcC
Q 039151          265 FGICMGHQLLGQALG  279 (279)
Q Consensus       265 LGICLGhQLLa~AlG  279 (279)
                      ||||+|||+|+.++|
T Consensus        98 lGIC~G~QlL~~~~g  112 (219)
T 1q7r_A           98 FGTCAGLILLAKRIV  112 (219)
T ss_dssp             EEETTHHHHHEEEEE
T ss_pred             EEECHHHHHHHHHhC
Confidence            999999999998875

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=99.38  E-value=2.1e-13  Score=118.91  Aligned_cols=85  Identities=18%  Similarity=0.286  Sum_probs=64.3

Q ss_pred             CccEEEEEEc-CchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHH-CCCC
Q 039151          190 KTYRVIAYDF-GIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELL-GKVP  263 (279)
Q Consensus       190 ~~~~I~viD~-G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~-~~~P  263 (279)
                      .+++|+++|+ |...++++.|++.|+++.+++.   .+++.  ++|+|||+||+.+..+.    ....+.|++++ .++|
T Consensus        19 ~~~~I~ii~~~~~~~~~~~~l~~~g~~~~~~~~---~~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~g~P   93 (208)
T 2iss_D           19 SHMKIGVLGVQGDVREHVEALHKLGVETLIVKL---PEQLD--MVDGLILPGGESTTMIRILKEMDMDEKLVERINNGLP   93 (208)
T ss_dssp             -CCEEEEECSSSCHHHHHHHHHHTTCEEEEECS---GGGGG--GCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCcEEEEEECCCchHHHHHHHHHCCCEEEEeCC---hHHHh--hCCEEEECCCcHHHHHhhhhhhhHHHHHHHHHHCCCe
Confidence            4579999999 5466788999999999998864   34443  69999998875222110    11357788887 7999


Q ss_pred             EeeecHHHHHHHHHcC
Q 039151          264 VFGICMGHQLLGQALG  279 (279)
Q Consensus       264 ILGICLGhQLLa~AlG  279 (279)
                      +||||+|||+|+.++|
T Consensus        94 ilGIC~G~QlL~~~~g  109 (208)
T 2iss_D           94 VFATCAGVILLAKRIK  109 (208)
T ss_dssp             EEEETHHHHHHEEEEC
T ss_pred             EEEECHHHHHHHHHcC
Confidence            9999999999999876

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=99.37  E-value=5.8e-13  Score=121.46  Aligned_cols=86  Identities=19%  Similarity=0.276  Sum_probs=63.2

Q ss_pred             cEEEEE-EcC---c--hHHHHHHHH----HCCCeEEEEcCCCC---------hhhhhccCCCeEEEcCCCCCCCCChHHH
Q 039151          192 YRVIAY-DFG---I--KHNILRRLA----SYGCQIIVVPSTWP---------ASETLKLKPDGVLFSNGPGDPSAVPYAV  252 (279)
Q Consensus       192 ~~I~vi-D~G---~--k~~I~r~L~----~~G~~v~vvp~~~~---------~~~i~~~~~DgIiLSgGPGdp~~~~~~i  252 (279)
                      .+|+++ |+|   .  ..++.++|.    +.++++.++..+..         .++.. .++|||||+||||++.. ...+
T Consensus         9 ~~Iaivg~y~~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~-~~~dgiil~GG~~~~~~-~~~~   86 (273)
T 2w7t_A            9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKAL-LGCDGIFVPGGFGNRGV-DGKC   86 (273)
T ss_dssp             EEEEEEECCHHHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHH-HTCSEEEECCCCTTTTH-HHHH
T ss_pred             CEEEEEeCCCcCCchHHHHHHHHHHHHHHhcCCceEEeccChhhcccccchhHHHHH-hhCCEEEecCCCCCcCc-hhHH
Confidence            689999 886   2  445555554    45677887765421         11211 37999999999998653 4577


Q ss_pred             HHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151          253 AIVKELL-GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       253 ~~Ir~~~-~~~PILGICLGhQLLa~AlG  279 (279)
                      +.++.++ .++|+||||+|||+|+.|+|
T Consensus        87 ~~i~~~~~~~~PilGIC~G~Qll~~a~G  114 (273)
T 2w7t_A           87 AAAQVARMNNIPYFGVXLGMQVAVIELS  114 (273)
T ss_dssp             HHHHHHHHHTCCEEEETHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCcEEEECcCHHHHHHHHh
Confidence            8888888 69999999999999999876

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.32  E-value=4.3e-13  Score=114.38  Aligned_cols=83  Identities=14%  Similarity=0.137  Sum_probs=64.1

Q ss_pred             cEEEEEEc-CchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCC-CCCC---hHHHHHHHHHH-CC-CCE
Q 039151          192 YRVIAYDF-GIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGD-PSAV---PYAVAIVKELL-GK-VPV  264 (279)
Q Consensus       192 ~~I~viD~-G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGd-p~~~---~~~i~~Ir~~~-~~-~PI  264 (279)
                      ++|.|+.+ |-..++.++|++.|+++.+++..   +++  .++|||+|+||++. +.+.   ....+.|+++. .+ +|+
T Consensus         3 p~Igi~~~~~~~~~~~~~l~~~G~~~~~~~~~---~~l--~~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~Pi   77 (191)
T 2ywd_A            3 GVVGVLALQGDFREHKEALKRLGIEAKEVRKK---EHL--EGLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLAL   77 (191)
T ss_dssp             CCEEEECSSSCHHHHHHHHHTTTCCCEEECSG---GGG--TTCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEE
T ss_pred             cEEEEEecCCchHHHHHHHHHCCCEEEEeCCh---hhh--ccCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCeE
Confidence            46888876 66678999999999999998742   344  36899999999632 2221   23467888887 68 999


Q ss_pred             eeecHHHHHHHHHcC
Q 039151          265 FGICMGHQLLGQALG  279 (279)
Q Consensus       265 LGICLGhQLLa~AlG  279 (279)
                      ||||+|||+|+.++|
T Consensus        78 lGiC~G~Q~l~~~~g   92 (191)
T 2ywd_A           78 FGTCAGAIWLAKEIV   92 (191)
T ss_dssp             EEETHHHHHHEEEET
T ss_pred             EEECHHHHHHHHHhC
Confidence            999999999999876

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=99.26  E-value=6.7e-12  Score=108.56  Aligned_cols=81  Identities=14%  Similarity=0.066  Sum_probs=64.7

Q ss_pred             cEEEEEEcCc-h--HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCC--------ChHHHHHHHHHH-
Q 039151          192 YRVIAYDFGI-K--HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA--------VPYAVAIVKELL-  259 (279)
Q Consensus       192 ~~I~viD~G~-k--~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~--------~~~~i~~Ir~~~-  259 (279)
                      ++|+++|++. .  .++.+.|++.|+++.+++...   ++  .++|+|||+||++.+..        .....+.|+++. 
T Consensus         3 ~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~---~~--~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~~   77 (213)
T 3d54_D            3 PRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDD---KL--DDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKAAE   77 (213)
T ss_dssp             CEEEEECCTTEEEHHHHHHHHHTTTCEEEEECTTC---CC--SSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHHHH
T ss_pred             cEEEEEEcCCCCccHHHHHHHHHCCCEEEEEecCC---Cc--ccCCEEEECCCCchhhhhccccccccHHHHHHHHHHHH
Confidence            5899999953 2  688999999999999997542   22  37999999998754432        134678888888 


Q ss_pred             CCCCEeeecHHHHHHHHH
Q 039151          260 GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       260 ~~~PILGICLGhQLLa~A  277 (279)
                      .++|+||||+|||+|+.|
T Consensus        78 ~~~pilgIC~G~qlLa~a   95 (213)
T 3d54_D           78 RGKLIMGICNGFQILIEM   95 (213)
T ss_dssp             HTCEEEECHHHHHHHHHH
T ss_pred             CCCEEEEECHHHHHHHHc
Confidence            689999999999999998

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=99.18  E-value=6e-12  Score=110.78  Aligned_cols=84  Identities=15%  Similarity=0.240  Sum_probs=63.5

Q ss_pred             ccEEEEEEcC-chHHHHHHHHHC---CCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCC---C---hHHHHHHHHHH-
Q 039151          191 TYRVIAYDFG-IKHNILRRLASY---GCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA---V---PYAVAIVKELL-  259 (279)
Q Consensus       191 ~~~I~viD~G-~k~~I~r~L~~~---G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~---~---~~~i~~Ir~~~-  259 (279)
                      +++|.|++++ .-.+.++.|++.   |+++.+++.   .+++.  ++|+|||+||+.+..+   .   ....+.|++++ 
T Consensus         3 ~~~I~Il~~~~~~~~~~~~l~~~~~~G~~~~~~~~---~~~l~--~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~~~   77 (227)
T 2abw_A            3 EITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRN---VHDLG--LCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIH   77 (227)
T ss_dssp             CEEEEEECTTSCCHHHHHHHHTTCCTTEEEEEECS---HHHHH--TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHhccCCeEEEEEcC---ccccc--cCCEEEECCCcHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3689999884 345678899988   998888763   34553  6999999999854321   1   23467888887 


Q ss_pred             C-CCCEeeecHHHHHHHHHcC
Q 039151          260 G-KVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       260 ~-~~PILGICLGhQLLa~AlG  279 (279)
                      . ++|+||||+|||+|+.++|
T Consensus        78 ~~g~PilGIC~G~QlL~~~~g   98 (227)
T 2abw_A           78 VLKKPIWGTCAGCILLSKNVE   98 (227)
T ss_dssp             TSCCCEEEETHHHHHTEEEEE
T ss_pred             hcCCEEEEECHHHHHHHHHhc
Confidence            7 8999999999999998764

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=99.14  E-value=1.1e-11  Score=123.53  Aligned_cols=83  Identities=17%  Similarity=0.188  Sum_probs=64.6

Q ss_pred             cEEEEEEcC--chHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh------HHHHHHHHHH-CCC
Q 039151          192 YRVIAYDFG--IKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP------YAVAIVKELL-GKV  262 (279)
Q Consensus       192 ~~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~------~~i~~Ir~~~-~~~  262 (279)
                      ++|+++|++  ...++.++|++.|+++.+++.... ..+  .++||||| +|||++....      ...+.|++++ .++
T Consensus         5 ~~I~Iid~~~g~~~~~~~~l~~~G~~~~vv~~~~~-~~l--~~~DglIL-pGgG~~~~~~~~l~~~~~~~~i~~~~~~g~   80 (555)
T 1jvn_A            5 PVVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKD-FNI--SGTSRLIL-PGVGNYGHFVDNLFNRGFEKPIREYIESGK   80 (555)
T ss_dssp             CEEEEECCSCSCCHHHHHHHHHTTCEEEEESSGGG-CCS--TTCSCEEE-EECSCHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CEEEEEECCCCCHHHHHHHHHHCCCEEEEECCccc-ccc--ccCCEEEE-CCCCchHhHhhhhhhccHHHHHHHHHHcCC
Confidence            589999996  578999999999999999874211 113  37999999 5667764321      2467788887 789


Q ss_pred             CEeeecHHHHHHHHHc
Q 039151          263 PVFGICMGHQLLGQAL  278 (279)
Q Consensus       263 PILGICLGhQLLa~Al  278 (279)
                      |+||||+|||+|+.++
T Consensus        81 PiLGIC~G~QlL~~a~   96 (555)
T 1jvn_A           81 PIMGIXVGLQALFAGS   96 (555)
T ss_dssp             CEEEEEHHHHTTEEEE
T ss_pred             cEEEEchhhhhhhhhh
Confidence            9999999999999876

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=98.82  E-value=4e-09  Score=97.84  Aligned_cols=89  Identities=17%  Similarity=0.168  Sum_probs=58.0

Q ss_pred             CccEEEEEEcCc-h----HHHHHHHHHCCCeEEE--EcCC--C--------------ChhhhhccCCCeEEEcCCCCCCC
Q 039151          190 KTYRVIAYDFGI-K----HNILRRLASYGCQIIV--VPST--W--------------PASETLKLKPDGVLFSNGPGDPS  246 (279)
Q Consensus       190 ~~~~I~viD~G~-k----~~I~r~L~~~G~~v~v--vp~~--~--------------~~~~i~~~~~DgIiLSgGPGdp~  246 (279)
                      ..+||+++++=- |    ..+.|.|.....++.+  +...  .              +++++...++||+||+|||-+..
T Consensus        34 rplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~~~~  113 (301)
T 2vdj_A           34 RALKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVETL  113 (301)
T ss_dssp             CCEEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCCTTTTS
T ss_pred             CCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCCCCcCC
Confidence            468999999821 2    3455666555544544  4221  1              24454446899999999996542


Q ss_pred             ---CC---hHHHHHHHHHH-CCCCEeeecHHHHHHHHHc
Q 039151          247 ---AV---PYAVAIVKELL-GKVPVFGICMGHQLLGQAL  278 (279)
Q Consensus       247 ---~~---~~~i~~Ir~~~-~~~PILGICLGhQLLa~Al  278 (279)
                         +.   ..+.+.++.+. ..+|+||||+|||+++.++
T Consensus       114 ~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~  152 (301)
T 2vdj_A          114 SFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHH  152 (301)
T ss_dssp             CGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHH
T ss_pred             CcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHh
Confidence               23   23455666665 6899999999999965554

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=98.81  E-value=4.9e-09  Score=97.68  Aligned_cols=89  Identities=18%  Similarity=0.126  Sum_probs=58.8

Q ss_pred             CccEEEEEEcCc-h----HHHHHHHHHCCCeEEE--EcCC--C--------------ChhhhhccCCCeEEEcCCCCCCC
Q 039151          190 KTYRVIAYDFGI-K----HNILRRLASYGCQIIV--VPST--W--------------PASETLKLKPDGVLFSNGPGDPS  246 (279)
Q Consensus       190 ~~~~I~viD~G~-k----~~I~r~L~~~G~~v~v--vp~~--~--------------~~~~i~~~~~DgIiLSgGPGdp~  246 (279)
                      ..+||+++++=- |    ..+.|.|.....++.+  +...  .              +++++...++||+||+|||-+..
T Consensus        46 rplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~~~~  125 (312)
T 2h2w_A           46 RPLEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPVELL  125 (312)
T ss_dssp             CCEEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSCTTS
T ss_pred             CCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCCCCCCC
Confidence            468999999821 2    3466777665655554  4221  1              24444446799999999996542


Q ss_pred             ---CCh---HHHHHHHHHH-CCCCEeeecHHHHHHHHHc
Q 039151          247 ---AVP---YAVAIVKELL-GKVPVFGICMGHQLLGQAL  278 (279)
Q Consensus       247 ---~~~---~~i~~Ir~~~-~~~PILGICLGhQLLa~Al  278 (279)
                         +.+   .+.+.++.+. ..+|+||||+|||+++.++
T Consensus       126 ~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~  164 (312)
T 2h2w_A          126 PFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYF  164 (312)
T ss_dssp             CGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHH
T ss_pred             CCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHh
Confidence               232   3455666665 6899999999999966654

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=98.57  E-value=3.6e-08  Score=87.45  Aligned_cols=81  Identities=12%  Similarity=0.117  Sum_probs=60.3

Q ss_pred             cEEEEEEcCc--------hHHHHHHHHHCCCeEEEEcCCCCh-hhhhccCCCeEEEcCCCCCCCCCh------HHHHHHH
Q 039151          192 YRVIAYDFGI--------KHNILRRLASYGCQIIVVPSTWPA-SETLKLKPDGVLFSNGPGDPSAVP------YAVAIVK  256 (279)
Q Consensus       192 ~~I~viD~G~--------k~~I~r~L~~~G~~v~vvp~~~~~-~~i~~~~~DgIiLSgGPGdp~~~~------~~i~~Ir  256 (279)
                      .+|++||++.        ..++.+.|++.|+++.++....+. +++.  +.|+|+++|  |+.....      ...+.|+
T Consensus        32 ~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~--~ad~I~lpG--G~~~~~~~~l~~~gl~~~l~  107 (229)
T 1fy2_A           32 RSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIE--KAEIIIVGG--GNTFQLLKESRERGLLAPMA  107 (229)
T ss_dssp             CEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHH--HCSEEEECC--SCHHHHHHHHHHTTCHHHHH
T ss_pred             CeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHh--cCCEEEECC--CcHHHHHHHHHHCChHHHHH
Confidence            5899999974        356778899999988877532233 5554  689999965  6654321      2456788


Q ss_pred             HHH-CCCCEeeecHHHHHHHH
Q 039151          257 ELL-GKVPVFGICMGHQLLGQ  276 (279)
Q Consensus       257 ~~~-~~~PILGICLGhQLLa~  276 (279)
                      +++ .++|++|+|.|+|+|+.
T Consensus       108 ~~~~~G~p~~G~sAG~~~l~~  128 (229)
T 1fy2_A          108 DRVKRGALYIGWSAGANLACP  128 (229)
T ss_dssp             HHHHTTCEEEEETHHHHHTSS
T ss_pred             HHHHcCCEEEEECHHHHhhcc
Confidence            777 78999999999999875

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=98.54  E-value=1.3e-07  Score=102.06  Aligned_cols=86  Identities=14%  Similarity=0.159  Sum_probs=62.2

Q ss_pred             CccEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCC---CChhhhhccCCCeEEEcCCC--CCCCCC-----------hH
Q 039151          190 KTYRVIAYDF-GI--KHNILRRLASYGCQIIVVPST---WPASETLKLKPDGVLFSNGP--GDPSAV-----------PY  250 (279)
Q Consensus       190 ~~~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~---~~~~~i~~~~~DgIiLSgGP--Gdp~~~-----------~~  250 (279)
                      .++||+|||| |.  .+++.++|++.|+++.+++..   ...+++  .++|+|+|+||.  ||.-..           ..
T Consensus      1046 ~~pkVaIi~~~G~N~~~~~~~A~~~aG~~~~~v~~~dl~~~~~~l--~~~d~lvlPGGfSygD~l~~g~~~a~~~l~~~~ 1123 (1303)
T 3ugj_A         1046 ARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGL--GNFHALVACGGFSYGDVLGAGEGWAKSILFNHR 1123 (1303)
T ss_dssp             CCCEEEEEECTTCCCHHHHHHHHHHTTCEEEEEEHHHHHTTSCCG--GGCSEEEECCSCGGGGTTSTTHHHHHHHHTSHH
T ss_pred             CCCEEEEEecCCcCCHHHHHHHHHHhCCceEEEeecccccCcccH--hhCCEEEECCCCcchhhhccchhHHHHHHhchh
Confidence            4679999999 54  468899999999999888631   112233  369999999884  231111           23


Q ss_pred             HHHHHHHHH--CCCCEeeecHHHHHHHHH
Q 039151          251 AVAIVKELL--GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       251 ~i~~Ir~~~--~~~PILGICLGhQLLa~A  277 (279)
                      ..+.+++++  .++|+||||+|+|+|+.+
T Consensus      1124 l~~~l~~~~~~~g~pvLGICnG~QlL~e~ 1152 (1303)
T 3ugj_A         1124 VRDEFETFFHRPQTLALGVCNGCQMMSNL 1152 (1303)
T ss_dssp             HHHHHHHHHHSSSCEEEEETHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCcEEEECHHHHHHHHh
Confidence            445677765  589999999999999875

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.40  E-value=2.4e-07  Score=81.17  Aligned_cols=82  Identities=13%  Similarity=0.042  Sum_probs=60.2

Q ss_pred             ccEEEEEEcCch--------HHHHHHHHHCCCeEEEEcCC-CCh----hhhhccCCCeEEEcCCCCCCCCC------hHH
Q 039151          191 TYRVIAYDFGIK--------HNILRRLASYGCQIIVVPST-WPA----SETLKLKPDGVLFSNGPGDPSAV------PYA  251 (279)
Q Consensus       191 ~~~I~viD~G~k--------~~I~r~L~~~G~~v~vvp~~-~~~----~~i~~~~~DgIiLSgGPGdp~~~------~~~  251 (279)
                      +.+|++|+++..        .++.+.|++.|+++.+++.. .+.    +.+  .+.|+|+++|  |+....      ...
T Consensus        27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l--~~ad~I~l~G--G~~~~l~~~L~~~gl  102 (206)
T 3l4e_A           27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKL--RKNDFIYVTG--GNTFFLLQELKRTGA  102 (206)
T ss_dssp             TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHH--HHSSEEEECC--SCHHHHHHHHHHHTH
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHH--HhCCEEEECC--CCHHHHHHHHHHCCh
Confidence            369999998653        56778899999999887522 233    233  3689999965  665432      235


Q ss_pred             HHHHHHHH-CCCCEeeecHHHHHHHH
Q 039151          252 VAIVKELL-GKVPVFGICMGHQLLGQ  276 (279)
Q Consensus       252 i~~Ir~~~-~~~PILGICLGhQLLa~  276 (279)
                      .+.|++++ +++|++|||.|+|+|+.
T Consensus       103 ~~~l~~~~~~G~p~~G~sAGa~~l~~  128 (206)
T 3l4e_A          103 DKLILEEIAAGKLYIGESAGAVITSP  128 (206)
T ss_dssp             HHHHHHHHHTTCEEEEETHHHHTTSS
T ss_pred             HHHHHHHHHcCCeEEEECHHHHHhcc
Confidence            67788887 78999999999999864

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=98.24  E-value=4.5e-06  Score=71.41  Aligned_cols=87  Identities=20%  Similarity=0.282  Sum_probs=62.9

Q ss_pred             ccEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCCC-----------------hhhhhccCCCeEEEcCCCCC--CC
Q 039151          191 TYRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTWP-----------------ASETLKLKPDGVLFSNGPGD--PS  246 (279)
Q Consensus       191 ~~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~~-----------------~~~i~~~~~DgIiLSgGPGd--p~  246 (279)
                      .++|+++-+ |+.    ....+.|++.|+++.++..+..                 ++++...++|+|||+||++.  ..
T Consensus        23 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~~~~l~  102 (193)
T 1oi4_A           23 SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLR  102 (193)
T ss_dssp             CCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHHHHHT
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcCHHHhh
Confidence            457888866 552    3467888899999998854321                 11221236899999999652  12


Q ss_pred             CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          247 AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       247 ~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      ..+...++|+++. .++|+.|||.|.|+|+.|
T Consensus       103 ~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a  134 (193)
T 1oi4_A          103 GDNRFVTFTRDFVNSGKPVFAICHGPQLLISA  134 (193)
T ss_dssp             TSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred             hCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence            2456888999988 799999999999999986

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=98.09  E-value=1e-05  Score=67.15  Aligned_cols=86  Identities=23%  Similarity=0.307  Sum_probs=62.4

Q ss_pred             cEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC---------------ChhhhhccCCCeEEEcCCCCCC--CCCh
Q 039151          192 YRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW---------------PASETLKLKPDGVLFSNGPGDP--SAVP  249 (279)
Q Consensus       192 ~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgGPGdp--~~~~  249 (279)
                      +||+++=+ |+.    ...++.|++.|+++.++..+.               +++++...++|.|||.||++..  ...+
T Consensus         3 ~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~   82 (168)
T 3l18_A            3 MKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLNE   82 (168)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTTCH
T ss_pred             cEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCHHHhccCH
Confidence            57777755 552    345678888999999885431               1233322369999999998531  2346


Q ss_pred             HHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          250 YAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       250 ~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      ...++++++. .++|+.+||.|.++|+.|
T Consensus        83 ~l~~~l~~~~~~~k~i~aiC~G~~~La~a  111 (168)
T 3l18_A           83 KAVMITRRMFEDDKPVASICHGPQILISA  111 (168)
T ss_dssp             HHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred             HHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence            7888999988 799999999999999976

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=97.84  E-value=4.7e-05  Score=64.25  Aligned_cols=87  Identities=18%  Similarity=0.273  Sum_probs=61.5

Q ss_pred             ccEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC--------------------ChhhhhccCCCeEEEcCCCCCC
Q 039151          191 TYRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW--------------------PASETLKLKPDGVLFSNGPGDP  245 (279)
Q Consensus       191 ~~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~--------------------~~~~i~~~~~DgIiLSgGPGdp  245 (279)
                      .++|+++=+ |+.    ...++.|+..|+++.++..+.                    +++++...++|.|||.||++++
T Consensus         9 ~~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~   88 (190)
T 2vrn_A            9 GKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTVNP   88 (190)
T ss_dssp             TCEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCchhH
Confidence            357887755 552    335577888999998875321                    1122222369999999997543


Q ss_pred             ---CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          246 ---SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       246 ---~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                         ...+..+++|+++. .++||.+||.|.++|+.|
T Consensus        89 ~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a  124 (190)
T 2vrn_A           89 DKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET  124 (190)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred             HHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence               23467889999988 799999999999999986

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=97.83  E-value=4e-05  Score=65.34  Aligned_cols=73  Identities=23%  Similarity=0.162  Sum_probs=56.0

Q ss_pred             HHHHHHHCCCeEEEEcCCC---------------ChhhhhccCCCeEEEcCCCCCC--CCChHHHHHHHHHH-CCCCEee
Q 039151          205 ILRRLASYGCQIIVVPSTW---------------PASETLKLKPDGVLFSNGPGDP--SAVPYAVAIVKELL-GKVPVFG  266 (279)
Q Consensus       205 I~r~L~~~G~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgGPGdp--~~~~~~i~~Ir~~~-~~~PILG  266 (279)
                      -++.|++.|++++++..+.               +++++...+||+|||+||+|..  .+.+...+++|++. .++||.+
T Consensus        27 p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~~~k~iaa  106 (177)
T 4hcj_A           27 SKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDNQKIVAG  106 (177)
T ss_dssp             HHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGGGGTTCHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHHHHhhCHHHHHHHHHHHHhCCEEEE
Confidence            4577888999998875321               2344444579999999998742  23467889999988 7999999


Q ss_pred             ecHHHHHHHHH
Q 039151          267 ICMGHQLLGQA  277 (279)
Q Consensus       267 ICLGhQLLa~A  277 (279)
                      ||.|.++|+.|
T Consensus       107 IC~g~~~La~a  117 (177)
T 4hcj_A          107 IGSGVVIMANA  117 (177)
T ss_dssp             ETTHHHHHHHT
T ss_pred             ecccHHHHHHC
Confidence            99999999875

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=97.74  E-value=6.8e-05  Score=63.91  Aligned_cols=86  Identities=17%  Similarity=0.103  Sum_probs=62.0

Q ss_pred             cEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC----------------Chhhh-hccCCCeEEEcCCCCCCC---
Q 039151          192 YRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW----------------PASET-LKLKPDGVLFSNGPGDPS---  246 (279)
Q Consensus       192 ~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~----------------~~~~i-~~~~~DgIiLSgGPGdp~---  246 (279)
                      +||+++=+ |+.    ...++.|++.|+++.++..+-                +++++ ...++|.|||.||++.+.   
T Consensus         4 ~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~l~   83 (197)
T 2rk3_A            4 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLS   83 (197)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHHHH
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHHhh
Confidence            46766655 552    345678888999999885321                12333 224799999999975432   


Q ss_pred             CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          247 AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       247 ~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      ..+..+++++++. .++||.+||.|.++|+.|
T Consensus        84 ~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a  115 (197)
T 2rk3_A           84 ESAAVKEILKEQENRKGLIATICAGPTALLAH  115 (197)
T ss_dssp             HCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             hCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence            2456788999988 799999999999999976

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=97.67  E-value=7.5e-05  Score=64.30  Aligned_cols=85  Identities=16%  Similarity=0.169  Sum_probs=61.0

Q ss_pred             EEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC------------------ChhhhhccCCCeEEEcCCCCCCCC--
Q 039151          193 RVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW------------------PASETLKLKPDGVLFSNGPGDPSA--  247 (279)
Q Consensus       193 ~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~------------------~~~~i~~~~~DgIiLSgGPGdp~~--  247 (279)
                      +|+++=+ |+.    ...++.|++.|++++++..+-                  +++++...++|.|||+||++.+.+  
T Consensus         4 kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~l~   83 (205)
T 2ab0_A            4 SALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFR   83 (205)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHHH
T ss_pred             EEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHHhc
Confidence            5666654 552    335677888999999885421                  123333347999999999754432  


Q ss_pred             -ChHHHHHHHHHH-CCCCEeeecHHH-HHHHHH
Q 039151          248 -VPYAVAIVKELL-GKVPVFGICMGH-QLLGQA  277 (279)
Q Consensus       248 -~~~~i~~Ir~~~-~~~PILGICLGh-QLLa~A  277 (279)
                       .+..+++++++. .++||.+||.|. ++|+.|
T Consensus        84 ~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a  116 (205)
T 2ab0_A           84 DSTLLVETVKQFHRSGRIVAAICAAPATVLVPH  116 (205)
T ss_dssp             HCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred             cCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence             456788999888 799999999999 999864

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=97.61  E-value=0.00015  Score=63.59  Aligned_cols=87  Identities=15%  Similarity=0.188  Sum_probs=61.0

Q ss_pred             cEEEEEEc------Cch----HHHHHHHHHCCCeEEEEcCCC---------------------------------Chhhh
Q 039151          192 YRVIAYDF------GIK----HNILRRLASYGCQIIVVPSTW---------------------------------PASET  228 (279)
Q Consensus       192 ~~I~viD~------G~k----~~I~r~L~~~G~~v~vvp~~~---------------------------------~~~~i  228 (279)
                      ++|+++=+      |+.    ...++.|++.|++++++..+-                                 +++++
T Consensus         7 ~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~~   86 (232)
T 1vhq_A            7 KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQA   86 (232)
T ss_dssp             CEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGC
T ss_pred             CeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHHc
Confidence            36777644      442    234577888999999885321                                 11222


Q ss_pred             hccCCCeEEEcCCCCCC---C----------CChHHHHHHHHHH-CCCCEeeecHHHHHHHHHc
Q 039151          229 LKLKPDGVLFSNGPGDP---S----------AVPYAVAIVKELL-GKVPVFGICMGHQLLGQAL  278 (279)
Q Consensus       229 ~~~~~DgIiLSgGPGdp---~----------~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~Al  278 (279)
                      ...++|+|||+||.+.+   .          ..+...++++++. .++||.+||.|-++|+.|+
T Consensus        87 ~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL  150 (232)
T 1vhq_A           87 DAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIF  150 (232)
T ss_dssp             CGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHC
T ss_pred             CcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHh
Confidence            12369999999997642   1          1456788999988 7999999999999999874

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=97.59  E-value=0.00015  Score=61.38  Aligned_cols=86  Identities=15%  Similarity=0.146  Sum_probs=61.0

Q ss_pred             cEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC----------------ChhhhhccCCCeEEEcCCCCCC---CC
Q 039151          192 YRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW----------------PASETLKLKPDGVLFSNGPGDP---SA  247 (279)
Q Consensus       192 ~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~----------------~~~~i~~~~~DgIiLSgGPGdp---~~  247 (279)
                      +||+++=+ |+.    ...++.|++.|++++++..+-                +++++....+|.|||.||.+.+   ..
T Consensus         6 kkv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~~~~   85 (190)
T 4e08_A            6 KSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMGE   85 (190)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHHHHH
T ss_pred             cEEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHHhhh
Confidence            46766544 552    335678888999999885432                1233333468999999984322   22


Q ss_pred             ChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          248 VPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       248 ~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      .+..+++++++. .++||.+||-|.++|+.|
T Consensus        86 ~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a  116 (190)
T 4e08_A           86 SSLVGDLLRSQESGGGLIAAICAAPTVLAKH  116 (190)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence            456788899888 799999999999999875

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=97.48  E-value=0.00026  Score=59.86  Aligned_cols=74  Identities=18%  Similarity=0.185  Sum_probs=53.6

Q ss_pred             HHHHHHHH-CCCeEEEEcCCC---------------ChhhhhccCCCeEEEcCCCCC-CCCChHHHHHHHHHH-CCCCEe
Q 039151          204 NILRRLAS-YGCQIIVVPSTW---------------PASETLKLKPDGVLFSNGPGD-PSAVPYAVAIVKELL-GKVPVF  265 (279)
Q Consensus       204 ~I~r~L~~-~G~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgGPGd-p~~~~~~i~~Ir~~~-~~~PIL  265 (279)
                      ..++.|++ .|+++.++..+-               +++++...++|.|||+||++. ....+..+++++++. .++||.
T Consensus        19 ~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~l~~~l~~~~~~~k~i~   98 (188)
T 2fex_A           19 LLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAADLGGLVKRFRDRDRLVA   98 (188)
T ss_dssp             HHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHHTCCCCCHHHHHHHHHTTCEEE
T ss_pred             HHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCcccccccHHHHHHHHHHHHCCCEEE
Confidence            35677777 899998875431               122222236899999999752 123456788899888 799999


Q ss_pred             eecHHHHHHHHH
Q 039151          266 GICMGHQLLGQA  277 (279)
Q Consensus       266 GICLGhQLLa~A  277 (279)
                      +||-|.++|+.|
T Consensus        99 aiC~G~~~La~a  110 (188)
T 2fex_A           99 GICAAASALGGT  110 (188)
T ss_dssp             EETHHHHHHHHT
T ss_pred             EECHHHHHHHHC
Confidence            999999999976

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=97.45  E-value=0.00076  Score=58.46  Aligned_cols=73  Identities=12%  Similarity=0.118  Sum_probs=53.7

Q ss_pred             HHHHHHHHC-CCeEEEEcCCC--------------ChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151          204 NILRRLASY-GCQIIVVPSTW--------------PASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI  267 (279)
Q Consensus       204 ~I~r~L~~~-G~~v~vvp~~~--------------~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI  267 (279)
                      ...+.|.+. |+++.++..+-              +++++ ..++|.|||.||++.....+..+++++++. .++|+.+|
T Consensus        21 ~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~~~~~~~~~l~~~l~~~~~~gk~iaai   99 (206)
T 3f5d_A           21 YLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLE-PANFNLLVMIGGDSWSNDNKKLLHFVKTAFQKNIPIAAI   99 (206)
T ss_dssp             HHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSS-CSCCSEEEECCBSCCCCCCHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhC-CcCCCEEEEcCCCChhhcCHHHHHHHHHHHHcCCEEEEE
Confidence            455667766 88888774321              12233 236899999999864334567889999988 79999999


Q ss_pred             cHHHHHHHHH
Q 039151          268 CMGHQLLGQA  277 (279)
Q Consensus       268 CLGhQLLa~A  277 (279)
                      |-|.++|+.|
T Consensus       100 C~G~~~La~a  109 (206)
T 3f5d_A          100 CGAVDFLAKN  109 (206)
T ss_dssp             THHHHHHHHT
T ss_pred             CHHHHHHHHc
Confidence            9999999976

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.37  E-value=0.00067  Score=56.40  Aligned_cols=72  Identities=15%  Similarity=0.120  Sum_probs=50.6

Q ss_pred             HHHHHHCCCeEEEEcCCC----------------Chhhh--hccCCCeEEEcCC--CCCCC------CChHHHHHHHHHH
Q 039151          206 LRRLASYGCQIIVVPSTW----------------PASET--LKLKPDGVLFSNG--PGDPS------AVPYAVAIVKELL  259 (279)
Q Consensus       206 ~r~L~~~G~~v~vvp~~~----------------~~~~i--~~~~~DgIiLSgG--PGdp~------~~~~~i~~Ir~~~  259 (279)
                      ++.+.+.|++++++..+.                +.+++  ...++|.||++||  +..+.      ..+...++++++.
T Consensus        22 ~e~~~~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~  101 (175)
T 3cne_A           22 LEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFG  101 (175)
T ss_dssp             HHHHHHTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHH
T ss_pred             hheeeeCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHH
Confidence            343446789998885431                12333  2246899999999  52332      2245778899888


Q ss_pred             -CCCCEeeecHHHHHHHHH
Q 039151          260 -GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       260 -~~~PILGICLGhQLLa~A  277 (279)
                       .++||.+||.|.++|+.|
T Consensus       102 ~~gk~i~aiC~G~~~La~a  120 (175)
T 3cne_A          102 EKGKMMIGHCAGAMMFDFT  120 (175)
T ss_dssp             HTTCEEEEETTHHHHHHHT
T ss_pred             HCCCEEEEECHHHHHHHHC
Confidence             799999999999999976

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=97.33  E-value=0.00035  Score=62.35  Aligned_cols=74  Identities=15%  Similarity=0.207  Sum_probs=54.5

Q ss_pred             HHHHHHHCCCeEEEEcCCC---------------------------------ChhhhhccCCCeEEEcCCCCCC------
Q 039151          205 ILRRLASYGCQIIVVPSTW---------------------------------PASETLKLKPDGVLFSNGPGDP------  245 (279)
Q Consensus       205 I~r~L~~~G~~v~vvp~~~---------------------------------~~~~i~~~~~DgIiLSgGPGdp------  245 (279)
                      .++.|++.|++++++..+.                                 +++++...++|+|||.||.+..      
T Consensus        47 p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~dv~~~~~D~livPGG~~~~~~L~~~  126 (242)
T 3l3b_A           47 VMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQIRVEEFDMLVIPGGYGVAKNFSNL  126 (242)
T ss_dssp             HHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGGCCGGGCSEEEECCCHHHHHHHBST
T ss_pred             HHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHHCCcccCCEEEEcCCcchhhhhhhh
Confidence            4577888999999874321                                 1122222469999999997631      


Q ss_pred             --------CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHHc
Q 039151          246 --------SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQAL  278 (279)
Q Consensus       246 --------~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~Al  278 (279)
                              ...+...++++++. .++|+.+||-|.++|+.|-
T Consensus       127 ~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag  168 (242)
T 3l3b_A          127 FDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL  168 (242)
T ss_dssp             TSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred             hccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence                    22367889999988 7999999999999999874

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=97.30  E-value=0.0003  Score=60.70  Aligned_cols=86  Identities=15%  Similarity=0.164  Sum_probs=61.7

Q ss_pred             cEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC----------------ChhhhhccCCCeEEEcCCCCCCC---C
Q 039151          192 YRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW----------------PASETLKLKPDGVLFSNGPGDPS---A  247 (279)
Q Consensus       192 ~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~----------------~~~~i~~~~~DgIiLSgGPGdp~---~  247 (279)
                      +||+++=+ |+.    ...++.|+..|++++++..+-                +++++...++|.|||.||.+.+.   .
T Consensus        10 ~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~l~~   89 (208)
T 3ot1_A           10 KRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFAD   89 (208)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHHHHHT
T ss_pred             CeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHHHHhh
Confidence            47777755 652    345678888999999885431                12232223699999999875432   3


Q ss_pred             ChHHHHHHHHHH-CCCCEeeecHHH-HHHHHH
Q 039151          248 VPYAVAIVKELL-GKVPVFGICMGH-QLLGQA  277 (279)
Q Consensus       248 ~~~~i~~Ir~~~-~~~PILGICLGh-QLLa~A  277 (279)
                      .+..+++++++. .++||.+||-|. .+|+.|
T Consensus        90 ~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a  121 (208)
T 3ot1_A           90 STALLALIDAFSQQGKLVAAICATPALVFAKQ  121 (208)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred             CHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence            467889999988 799999999998 888764

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=97.28  E-value=0.00068  Score=58.61  Aligned_cols=74  Identities=14%  Similarity=0.116  Sum_probs=54.8

Q ss_pred             HHHHHHHHCCCeEEEEcCCC-----Ch-----------------------hhhhccCCCeEEEcCCCCCC---CCChHHH
Q 039151          204 NILRRLASYGCQIIVVPSTW-----PA-----------------------SETLKLKPDGVLFSNGPGDP---SAVPYAV  252 (279)
Q Consensus       204 ~I~r~L~~~G~~v~vvp~~~-----~~-----------------------~~i~~~~~DgIiLSgGPGdp---~~~~~~i  252 (279)
                      ..++.|++.|++++++..+-     +.                       +++....+|+|||.||++..   ...+...
T Consensus        33 ~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~  112 (224)
T 1u9c_A           33 VPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQ  112 (224)
T ss_dssp             HHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHH
T ss_pred             HHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHHHhhcCHHHH
Confidence            35677888999999885321     10                       11112379999999998743   3346788


Q ss_pred             HHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          253 AIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       253 ~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      ++|+++. .++||.+||.|.++|+.|
T Consensus       113 ~~l~~~~~~~k~iaaiC~G~~~La~a  138 (224)
T 1u9c_A          113 YVLQQFAEDGRIIAAVCHGPSGLVNA  138 (224)
T ss_dssp             HHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             HHHHHHHHCCCEEEEEChHHHHHHHc
Confidence            9999988 799999999999999865

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=97.28  E-value=0.0014  Score=56.60  Aligned_cols=85  Identities=15%  Similarity=0.139  Sum_probs=58.3

Q ss_pred             EEEEEEc-Cc----hHHHHHHHH--------HCCCeEEEEcCCC---------------ChhhhhccCCCeEEEcCCCCC
Q 039151          193 RVIAYDF-GI----KHNILRRLA--------SYGCQIIVVPSTW---------------PASETLKLKPDGVLFSNGPGD  244 (279)
Q Consensus       193 ~I~viD~-G~----k~~I~r~L~--------~~G~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgGPGd  244 (279)
                      +|+++=+ |+    -...++.|+        +.+++++++..+-               +++++....+|.|||.||++.
T Consensus         7 ~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~~~   86 (212)
T 3efe_A            7 KAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGTTW   86 (212)
T ss_dssp             CEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCSCT
T ss_pred             EEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCCcc
Confidence            4555543 43    234556676        5688888875431               123332337999999999864


Q ss_pred             CC-CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          245 PS-AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       245 p~-~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      .. ..+..+++++++. .++||.+||-|..+|+.|
T Consensus        87 ~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a  121 (212)
T 3efe_A           87 SEEIHQPILERIGQALKIGTIVAAICGATDALANM  121 (212)
T ss_dssp             TSGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence            32 2356788999888 699999999999999876

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=97.19  E-value=0.0012  Score=62.16  Aligned_cols=87  Identities=23%  Similarity=0.343  Sum_probs=62.9

Q ss_pred             ccEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCC-------------------------------CChhhhhccCCC
Q 039151          191 TYRVIAYDF-GIK----HNILRRLASYGCQIIVVPST-------------------------------WPASETLKLKPD  234 (279)
Q Consensus       191 ~~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~-------------------------------~~~~~i~~~~~D  234 (279)
                      ..||+++=+ |+.    ...++.|++.|++++++..+                               .+.+++....+|
T Consensus       205 ~~ki~ill~dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  284 (396)
T 3uk7_A          205 NKRILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYD  284 (396)
T ss_dssp             CCEEEEECCTTEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGGCS
T ss_pred             cceEEEEecCCCcchhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcccCC
Confidence            357776654 652    34667888899999988432                               122333224699


Q ss_pred             eEEEcCCCCCC--CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          235 GVLFSNGPGDP--SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       235 gIiLSgGPGdp--~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      .|||.||++..  ...+..++++|++. .++|+.+||-|.++|+.|
T Consensus       285 ~livpGg~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a  330 (396)
T 3uk7_A          285 ALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAA  330 (396)
T ss_dssp             EEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred             EEEECCCcchhhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence            99999998622  23467888999988 799999999999999986

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=97.17  E-value=0.0013  Score=56.55  Aligned_cols=87  Identities=17%  Similarity=0.149  Sum_probs=58.1

Q ss_pred             ccEEEEEEc-Cch----HHHHHHHHHCC------CeEEEEcCCC--------------ChhhhhccCCCeEEEcCCCCCC
Q 039151          191 TYRVIAYDF-GIK----HNILRRLASYG------CQIIVVPSTW--------------PASETLKLKPDGVLFSNGPGDP  245 (279)
Q Consensus       191 ~~~I~viD~-G~k----~~I~r~L~~~G------~~v~vvp~~~--------------~~~~i~~~~~DgIiLSgGPGdp  245 (279)
                      .++|+++=+ |+.    ...++.|+..+      +++.++..+-              +++++...++|.|||.||++..
T Consensus         5 ~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~livpGG~~~~   84 (202)
T 3gra_A            5 PYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLLVVCGGLRTP   84 (202)
T ss_dssp             CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEEEEECCTTCC
T ss_pred             cEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEEEEeCCCchh
Confidence            356777655 552    22344454432      7777774431              1222222479999999998754


Q ss_pred             CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          246 SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       246 ~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      ...+..+++++++. .++++.+||-|..+|+.|
T Consensus        85 ~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a  117 (202)
T 3gra_A           85 LKYPELDRLLNDCAAHGMALGGLWNGAWFLGRA  117 (202)
T ss_dssp             SCCTTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred             hccHHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence            32267888999888 699999999999999986

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=97.12  E-value=0.0022  Score=65.27  Aligned_cols=87  Identities=17%  Similarity=0.114  Sum_probs=64.9

Q ss_pred             ccEEEEE-EcC-ch----HHHHHHHHHCCCeEEEEcCC------CChhhhhccCCCeEEEcCCCCC-------CC---CC
Q 039151          191 TYRVIAY-DFG-IK----HNILRRLASYGCQIIVVPST------WPASETLKLKPDGVLFSNGPGD-------PS---AV  248 (279)
Q Consensus       191 ~~~I~vi-D~G-~k----~~I~r~L~~~G~~v~vvp~~------~~~~~i~~~~~DgIiLSgGPGd-------p~---~~  248 (279)
                      +.+|+|+ .-| +.    ..+.+.|++.|+.|+++-..      .++++.....||+|||.||+..       |.   ..
T Consensus       537 grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~  616 (688)
T 3ej6_A          537 TLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFPA  616 (688)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSCT
T ss_pred             CCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhhccC
Confidence            4578766 336 43    44678899999999999532      2344444457999999999643       22   23


Q ss_pred             hHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          249 PYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       249 ~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      +..+++|+++. .+|||..||-|-|+|..|
T Consensus       617 ~~a~~fV~e~~~hgKpIAAIchgp~lL~~A  646 (688)
T 3ej6_A          617 GRPSQILTDGYRWGKPVAAVGSAKKALQSI  646 (688)
T ss_dssp             THHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence            57889999999 799999999999999875

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=97.08  E-value=0.0019  Score=60.74  Aligned_cols=86  Identities=22%  Similarity=0.275  Sum_probs=61.7

Q ss_pred             cEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC-------------------------------ChhhhhccCCCe
Q 039151          192 YRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW-------------------------------PASETLKLKPDG  235 (279)
Q Consensus       192 ~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~-------------------------------~~~~i~~~~~Dg  235 (279)
                      +||+++=+ |+.    ...++.|++.|++++++..+.                               +++++....+|.
T Consensus        13 ~kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   92 (396)
T 3uk7_A           13 RTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKYDG   92 (396)
T ss_dssp             CEEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGCSE
T ss_pred             CeEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccCCE
Confidence            46766644 552    335678899999999885431                               122222246999


Q ss_pred             EEEcCCCCCC--CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          236 VLFSNGPGDP--SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       236 IiLSgGPGdp--~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      ||+.||.+..  ...+..+++++++. .++|+.+||-|.++|+.|
T Consensus        93 livpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a  137 (396)
T 3uk7_A           93 LVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLILAAA  137 (396)
T ss_dssp             EEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred             EEECCCcchhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence            9999997621  23467888999988 799999999999999976

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=97.07  E-value=0.00033  Score=62.74  Aligned_cols=47  Identities=13%  Similarity=0.166  Sum_probs=39.3

Q ss_pred             cCCCeEEEcCCCCCC---CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          231 LKPDGVLFSNGPGDP---SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       231 ~~~DgIiLSgGPGdp---~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      .+||+|||.||.|..   ...+...++++++. .++||.+||.|.++|+.|
T Consensus       104 ~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a  154 (247)
T 3n7t_A          104 HDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI  154 (247)
T ss_dssp             GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred             hhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence            469999999998753   23467888999988 799999999999999875

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=96.88  E-value=0.0025  Score=60.32  Aligned_cols=87  Identities=21%  Similarity=0.256  Sum_probs=61.7

Q ss_pred             ccEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCCC-----------------hhhhhccCCCeEEEcCCCCCC--C
Q 039151          191 TYRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTWP-----------------ASETLKLKPDGVLFSNGPGDP--S  246 (279)
Q Consensus       191 ~~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~~-----------------~~~i~~~~~DgIiLSgGPGdp--~  246 (279)
                      .++|+++=+ |+.    ...++.|+..|+++.++..+-.                 ++++....+|.|||+||++..  .
T Consensus        10 mkkV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g~~~l~   89 (365)
T 3fse_A           10 KKKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMAPDKMR   89 (365)
T ss_dssp             -CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTHHHHHT
T ss_pred             ceEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcchhhcc
Confidence            357777755 552    3456788889999988743211                 122212258999999998521  2


Q ss_pred             CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          247 AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       247 ~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      ..+..+++++++. .++||.+||-|..+|+.|
T Consensus        90 ~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A  121 (365)
T 3fse_A           90 RNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG  121 (365)
T ss_dssp             TCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             CCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence            3467889999988 799999999999999975

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=96.85  E-value=0.00066  Score=59.99  Aligned_cols=47  Identities=17%  Similarity=0.163  Sum_probs=38.6

Q ss_pred             cCCCeEEEcCCCCCC---CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          231 LKPDGVLFSNGPGDP---SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       231 ~~~DgIiLSgGPGdp---~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      .++|+|||.||.+..   ...+...++++++. .++||.+||.|-.+|+.|
T Consensus        97 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a  147 (243)
T 1rw7_A           97 DDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGL  147 (243)
T ss_dssp             GGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             hhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence            368999999998743   23467888999988 799999999999998865

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=96.81  E-value=0.0018  Score=66.38  Aligned_cols=86  Identities=15%  Similarity=0.055  Sum_probs=62.4

Q ss_pred             ccEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC---------------ChhhhhccCCCeEEEcCCCCCC--CCC
Q 039151          191 TYRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW---------------PASETLKLKPDGVLFSNGPGDP--SAV  248 (279)
Q Consensus       191 ~~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgGPGdp--~~~  248 (279)
                      +.+|+|+=. |+.    ...++.|++.|++|+++....               ++++.....+|+|||.|| +..  ...
T Consensus       600 grKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g~~~Lr~d  678 (753)
T 3ttv_A          600 GRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-NIADIADN  678 (753)
T ss_dssp             TCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-CGGGTTTC
T ss_pred             CCEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-ChHHhhhC
Confidence            457776633 653    456788999999999885321               122333346899999999 422  234


Q ss_pred             hHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          249 PYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       249 ~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      +..+++|+++. .++||.+||-|-++|+.|
T Consensus       679 ~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A  708 (753)
T 3ttv_A          679 GDANYYLMEAYKHLKPIALAGDARKFKATI  708 (753)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred             HHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence            67899999999 799999999999999875

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=96.80  E-value=0.00067  Score=60.52  Aligned_cols=47  Identities=17%  Similarity=0.176  Sum_probs=39.3

Q ss_pred             cCCCeEEEcCCCCCC---CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          231 LKPDGVLFSNGPGDP---SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       231 ~~~DgIiLSgGPGdp---~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      .++|+|||+||.+..   ...+...++++++. .++||.+||-|-.+|+.|
T Consensus        97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a  147 (244)
T 3kkl_A           97 SDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL  147 (244)
T ss_dssp             GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             hhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence            469999999998743   23467889999988 799999999999999865

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=96.51  E-value=0.0053  Score=62.48  Aligned_cols=87  Identities=17%  Similarity=0.164  Sum_probs=63.4

Q ss_pred             ccEEEEEE---cCch----HHHHHHHHHCCCeEEEEcCCC------ChhhhhccCCCeEEEcCCCCC-------------
Q 039151          191 TYRVIAYD---FGIK----HNILRRLASYGCQIIVVPSTW------PASETLKLKPDGVLFSNGPGD-------------  244 (279)
Q Consensus       191 ~~~I~viD---~G~k----~~I~r~L~~~G~~v~vvp~~~------~~~~i~~~~~DgIiLSgGPGd-------------  244 (279)
                      +++|+|+=   -|+.    ..+.+.|++.|++|+++-...      ++++.....+|+|||.||...             
T Consensus       529 g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~  608 (688)
T 2iuf_A          529 GLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSA  608 (688)
T ss_dssp             TCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCT
T ss_pred             CCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCccccccccccccccc
Confidence            45777663   3542    346788999999999985422      233333457999999999533             


Q ss_pred             ---CC---CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          245 ---PS---AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       245 ---p~---~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                         +.   .....+++++++. .+|||..||-|-++|..|
T Consensus       609 ~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a  648 (688)
T 2iuf_A          609 GSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG  648 (688)
T ss_dssp             TSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred             ccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence               32   2357889999998 699999999999999865

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=96.46  E-value=0.0044  Score=63.40  Aligned_cols=88  Identities=11%  Similarity=0.087  Sum_probs=62.8

Q ss_pred             ccEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC---------------ChhhhhccCCCeEEEcCCCCCCC---C
Q 039151          191 TYRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW---------------PASETLKLKPDGVLFSNGPGDPS---A  247 (279)
Q Consensus       191 ~~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgGPGdp~---~  247 (279)
                      +++|+++=+ |+.    ...++.|...|++++++....               +++++....+|+|||.||.+.+.   .
T Consensus       534 ~rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l~~  613 (715)
T 1sy7_A          534 SRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSK  613 (715)
T ss_dssp             TCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccHhhhcc
Confidence            357887755 652    346678888999999885421               11222123589999999854332   3


Q ss_pred             ChHHHHHHHHHH-CCCCEeeecHHHHHHHHHc
Q 039151          248 VPYAVAIVKELL-GKVPVFGICMGHQLLGQAL  278 (279)
Q Consensus       248 ~~~~i~~Ir~~~-~~~PILGICLGhQLLa~Al  278 (279)
                      .+..+++|+++. .++||.+||-|..+|+.|+
T Consensus       614 ~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~Al  645 (715)
T 1sy7_A          614 NGRALHWIREAFGHLKAIGATGEAVDLVAKAI  645 (715)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEETTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCEEEEECHHHHHHHHcc
Confidence            456888999988 7999999999999999883

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=96.41  E-value=0.007  Score=54.14  Aligned_cols=85  Identities=14%  Similarity=0.207  Sum_probs=59.9

Q ss_pred             cEEEEEEc-Cch----HHHHHHH-HHCCCeEEEEcCCC---------------ChhhhhccCCCeEEEcCCC-CCC--CC
Q 039151          192 YRVIAYDF-GIK----HNILRRL-ASYGCQIIVVPSTW---------------PASETLKLKPDGVLFSNGP-GDP--SA  247 (279)
Q Consensus       192 ~~I~viD~-G~k----~~I~r~L-~~~G~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgGP-Gdp--~~  247 (279)
                      ++|+++=+ |+.    ...++.| +..|+++.++..+-               +++++. ..+|.|||.||. |..  ..
T Consensus        24 ~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~-~~yD~liVPGG~~g~~~l~~  102 (253)
T 3ewn_A           24 EQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCP-RDLTVLFAPGGTDGTLAAAS  102 (253)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSC-SSCSEEEECCBSHHHHHHTT
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcC-CCCCEEEECCCccchhhhcc
Confidence            57887765 652    2355667 45689998885431               112222 246999999987 632  34


Q ss_pred             ChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          248 VPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       248 ~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      .+..+++|+++. .+++|.+||-|..+|+.|
T Consensus       103 ~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A  133 (253)
T 3ewn_A          103 DAETLAFMADRGARAKYITSVCSGSLILGAA  133 (253)
T ss_dssp             CHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred             CHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence            567889999988 699999999999999876

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=96.29  E-value=0.0047  Score=53.26  Aligned_cols=46  Identities=13%  Similarity=0.092  Sum_probs=38.6

Q ss_pred             CCCeEEEcCCCCCC----CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          232 KPDGVLFSNGPGDP----SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       232 ~~DgIiLSgGPGdp----~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      ++|.|||.||.+..    ...+..++++|++. .++++.+||-|..+|+.|
T Consensus        74 ~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a  124 (209)
T 3er6_A           74 FTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA  124 (209)
T ss_dssp             CCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred             CCCEEEECCCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence            69999999887532    23567889999988 799999999999999986

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=95.96  E-value=0.0043  Score=56.51  Aligned_cols=47  Identities=13%  Similarity=0.155  Sum_probs=38.5

Q ss_pred             cCCCeEEEcCCCCCCC---CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          231 LKPDGVLFSNGPGDPS---AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       231 ~~~DgIiLSgGPGdp~---~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      .++|+|||.||+|...   ..+...++|+++. .+++|.+||.|-.+|+.|
T Consensus       144 ~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a  194 (291)
T 1n57_A          144 SEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLAL  194 (291)
T ss_dssp             CSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGG
T ss_pred             ccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhh
Confidence            4689999999987542   2456888999988 799999999999988765

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=95.65  E-value=0.011  Score=51.81  Aligned_cols=46  Identities=24%  Similarity=0.304  Sum_probs=39.0

Q ss_pred             CCCeEEEcCCCCCC--CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          232 KPDGVLFSNGPGDP--SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       232 ~~DgIiLSgGPGdp--~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      .+|.|||.||+|..  ...+..+++++++. .+++|.+||-|..+|+.|
T Consensus        65 ~~D~livpGG~g~~~~~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~a  113 (231)
T 3noq_A           65 PLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLGAA  113 (231)
T ss_dssp             CCSEEEECCSTTHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred             cCCEEEECCCCChhhhccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence            69999999998742  23567889999998 699999999999999875

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=94.89  E-value=0.011  Score=51.02  Aligned_cols=46  Identities=15%  Similarity=0.328  Sum_probs=38.0

Q ss_pred             CCCeEEEcCCCCCC--CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          232 KPDGVLFSNGPGDP--SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       232 ~~DgIiLSgGPGdp--~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      .+|.|||.||++..  ...+..+++|+++. .+++|.+||-|..+|+.|
T Consensus        65 ~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a  113 (211)
T 3mgk_A           65 IEKILFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKA  113 (211)
T ss_dssp             SEEEEEECCSTHHHHHTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred             CCCEEEECCCcchhhhcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence            47999999998632  23467889999988 699999999999999875

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=94.36  E-value=0.027  Score=49.74  Aligned_cols=83  Identities=22%  Similarity=0.209  Sum_probs=52.5

Q ss_pred             ccEEEEEEc-Cch----HHHHHHHHHCC--CeEEEEcCCC---------------ChhhhhccCCCeEEEcCC-CCCC--
Q 039151          191 TYRVIAYDF-GIK----HNILRRLASYG--CQIIVVPSTW---------------PASETLKLKPDGVLFSNG-PGDP--  245 (279)
Q Consensus       191 ~~~I~viD~-G~k----~~I~r~L~~~G--~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgG-PGdp--  245 (279)
                      .++|+++=+ |+.    ...++.|+..+  +++.++. +-               ++++  ...+|.|||+|| +|..  
T Consensus        20 ~~kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~~V~ss~G~~v~~d~~l~~--~~~~D~liVPGG~~g~~~l   96 (236)
T 3bhn_A           20 MYKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILG-TKPEHHSQLGMTVKTDGHVSE--VKEQDVVLITSGYRGIPAA   96 (236)
T ss_dssp             CEEEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSSEEEBTTCCEEECSEEGGG--GGGCSEEEECCCTTHHHHH
T ss_pred             CCEEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEE-CCCcEEecCCcEEecCccccc--ccCCCEEEEcCCccCHhhh
Confidence            456777755 552    23455565544  6777664 21               1222  136899999999 6642  


Q ss_pred             CCChHHHHHHHHHHCCC-CEeeecHHHHHHHHH
Q 039151          246 SAVPYAVAIVKELLGKV-PVFGICMGHQLLGQA  277 (279)
Q Consensus       246 ~~~~~~i~~Ir~~~~~~-PILGICLGhQLLa~A  277 (279)
                      ...+..++++ ..-.++ +|.+||-|..+|+.|
T Consensus        97 ~~~~~l~~~L-~~~~~~~~IaaIC~G~~lLa~A  128 (236)
T 3bhn_A           97 LQDENFMSAL-KLDPSRQLIGSICAGSFVLHEL  128 (236)
T ss_dssp             HTCHHHHHHC-CCCTTTCEEEEETTHHHHHHHT
T ss_pred             ccCHHHHHHH-HhCCCCCEEEEEcHHHHHHHHc
Confidence            2335566777 332455 999999999999976

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=94.12  E-value=0.084  Score=44.80  Aligned_cols=83  Identities=18%  Similarity=0.109  Sum_probs=52.6

Q ss_pred             cEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC------------------Chhhhh-----ccCCCeEEEcCCCC
Q 039151          192 YRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW------------------PASETL-----KLKPDGVLFSNGPG  243 (279)
Q Consensus       192 ~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~------------------~~~~i~-----~~~~DgIiLSgGPG  243 (279)
                      +||+++=+ |+.    ...++.|++.|++++++....                  +++++.     ..+||.|||+||.+
T Consensus         5 ~kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG~~   84 (194)
T 4gdh_A            5 VKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGL   84 (194)
T ss_dssp             CCEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCCHH
T ss_pred             CEEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCCch
Confidence            45665543 662    234567888898887653210                  111211     12489999999854


Q ss_pred             CC---CCChHHHHHHHHHH-C-CCCEeeecHHHHHH
Q 039151          244 DP---SAVPYAVAIVKELL-G-KVPVFGICMGHQLL  274 (279)
Q Consensus       244 dp---~~~~~~i~~Ir~~~-~-~~PILGICLGhQLL  274 (279)
                      .+   .+.+...+++|++. + ++++..||-|..++
T Consensus        85 ~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~l~  120 (194)
T 4gdh_A           85 GAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTLTA  120 (194)
T ss_dssp             HHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGHHH
T ss_pred             hHhHhhhCHHHHHHHHHhhhcCCceEEeecccccch
Confidence            33   23567888999887 3 78999999997443

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=87.54  E-value=0.63  Score=42.44  Aligned_cols=82  Identities=11%  Similarity=0.120  Sum_probs=54.7

Q ss_pred             cEEEEEEcCc------hHHHHHHHHHCCC-eEEEEcCCC----Chhhhhc--cCCCeEEEcCCCCCCCC------ChHHH
Q 039151          192 YRVIAYDFGI------KHNILRRLASYGC-QIIVVPSTW----PASETLK--LKPDGVLFSNGPGDPSA------VPYAV  252 (279)
Q Consensus       192 ~~I~viD~G~------k~~I~r~L~~~G~-~v~vvp~~~----~~~~i~~--~~~DgIiLSgGPGdp~~------~~~~i  252 (279)
                      .+|++|-.-.      ...+.+.|+++|+ .+.+++...    +.+++.+  .+.|+|+++||  |...      .....
T Consensus        57 ~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GG--nt~~l~~~l~~t~l~  134 (291)
T 3en0_A           57 AIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGG--DQLRLCGLLADTPLM  134 (291)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCS--CHHHHHHHHTTCHHH
T ss_pred             CeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCC--CHHHHHHHHHhCCHH
Confidence            5788886632      2346677888999 787776531    1111111  36899999875  4322      13466


Q ss_pred             HHHHHHH-CC-CCEeeecHHHHHHH
Q 039151          253 AIVKELL-GK-VPVFGICMGHQLLG  275 (279)
Q Consensus       253 ~~Ir~~~-~~-~PILGICLGhQLLa  275 (279)
                      +.|+++. ++ .|+.|.|-|.-+++
T Consensus       135 ~~L~~~~~~G~~~~~GtSAGA~i~~  159 (291)
T 3en0_A          135 DRIRQRVHNGEISLAGTSAGAAVMG  159 (291)
T ss_dssp             HHHHHHHHTTSSEEEEETHHHHTTS
T ss_pred             HHHHHHHHCCCeEEEEeCHHHHhhh
Confidence            7888887 66 99999999998765

>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9

Probab=85.15  E-value=1.5  Score=38.67  Aligned_cols=64  Identities=20%  Similarity=0.222  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHCCCeEEEEcC-----CC--ChhhhhccCCCeEEEcCCCCCCC-----------CChHHHHHHHHHH-CCC
Q 039151          202 KHNILRRLASYGCQIIVVPS-----TW--PASETLKLKPDGVLFSNGPGDPS-----------AVPYAVAIVKELL-GKV  262 (279)
Q Consensus       202 k~~I~r~L~~~G~~v~vvp~-----~~--~~~~i~~~~~DgIiLSgGPGdp~-----------~~~~~i~~Ir~~~-~~~  262 (279)
                      ...+.++|+..++++++++.     ..  +.+++  .++|.||+++-+.+.-           ..+...+.|++++ .+.
T Consensus        42 ~~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L--~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~GG  119 (256)
T 2gk3_A           42 ATWLLECLRKGGVDIDYMPAHTVQIAFPESIDEL--NRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGG  119 (256)
T ss_dssp             CHHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHH--HTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCceEEEEecccchhhCCcChhHH--hcCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhCC
Confidence            45678899989999999853     22  23444  3799999987664210           0134678888888 688


Q ss_pred             CEeee
Q 039151          263 PVFGI  267 (279)
Q Consensus       263 PILGI  267 (279)
                      .+++|
T Consensus       120 gll~i  124 (256)
T 2gk3_A          120 GLLMI  124 (256)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88888

>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=83.44  E-value=0.23  Score=41.56  Aligned_cols=39  Identities=18%  Similarity=0.330  Sum_probs=28.9

Q ss_pred             cCCCeEEEcCCCCCCC---CChHHHHHHHHHH-CCCCEeeecH
Q 039151          231 LKPDGVLFSNGPGDPS---AVPYAVAIVKELL-GKVPVFGICM  269 (279)
Q Consensus       231 ~~~DgIiLSgGPGdp~---~~~~~i~~Ir~~~-~~~PILGICL  269 (279)
                      .++|.|||.||---|.   +.+...++|.+++ ....+.|||+
T Consensus        83 ~~~D~vVllGGLAMPk~~v~~e~v~~li~ki~~~~~kiiGvCF  125 (157)
T 2r47_A           83 GNVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGGELMGLCY  125 (157)
T ss_dssp             CCEEEEEEEGGGGSTTTSCCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCEEEEeccccCCCCCCCHHHHHHHHHHhhcCCCCEEEEEh
Confidence            4799999999954443   3355667788887 4566999996

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=83.29  E-value=8.1  Score=36.14  Aligned_cols=88  Identities=15%  Similarity=0.125  Sum_probs=51.5

Q ss_pred             cEEEEEEc--Cch---HHHHHHHHHC--CCeEEE--EcCCCChhhhhccCCCeEEEcCCCCCCCC-------ChHHHHHH
Q 039151          192 YRVIAYDF--GIK---HNILRRLASY--GCQIIV--VPSTWPASETLKLKPDGVLFSNGPGDPSA-------VPYAVAIV  255 (279)
Q Consensus       192 ~~I~viD~--G~k---~~I~r~L~~~--G~~v~v--vp~~~~~~~i~~~~~DgIiLSgGPGdp~~-------~~~~i~~I  255 (279)
                      ..++.+|.  |..   ..+++++++.  +..+..  +..-..+..+.+...|+|.+++|||....       ....+..|
T Consensus       113 vdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g~p~l~aI  192 (361)
T 3r2g_A          113 ADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPMLTCI  192 (361)
T ss_dssp             CCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEECCSSSSCHHHHHHHCCCCCHHHHH
T ss_pred             CCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEcCCCCcCccccccCCccHHHHHHH
Confidence            45788874  432   3467777765  555544  21111233344568999999999875311       11255667


Q ss_pred             HHHHC-CCCEe---eecHHHHHH-HHHcC
Q 039151          256 KELLG-KVPVF---GICMGHQLL-GQALG  279 (279)
Q Consensus       256 r~~~~-~~PIL---GICLGhQLL-a~AlG  279 (279)
                      +++.. ..||+   ||..|-++. ++++|
T Consensus       193 ~~~~~~~~PVIAdGGI~~~~di~kALa~G  221 (361)
T 3r2g_A          193 QDCSRADRSIVADGGIKTSGDIVKALAFG  221 (361)
T ss_dssp             HHHTTSSSEEEEESCCCSHHHHHHHHHTT
T ss_pred             HHHHHhCCCEEEECCCCCHHHHHHHHHcC
Confidence            76663 23998   787666665 45554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	279
d1a9xb1	151	c.8.3.1 (B:1502-1652) Carbamoyl phosphate syntheta	7e-48
d1a9xb2	228	c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthe	2e-32
d1gpma2	205	c.23.16.1 (A:3-207) GMP synthetase {Escherichia co	3e-17
d1qdlb_	195	c.23.16.1 (B:) Anthranilate synthase GAT subunit,	1e-09
d1i7qb_	192	c.23.16.1 (B:) Anthranilate synthase GAT subunit,	2e-08
d1wl8a1	188	c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA	3e-06
d1l9xa_	288	c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Ho	5e-06
d2a9va1	196	c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA	6e-05

>d1a9xb1 c.8.3.1 (B:1502-1652) Carbamoyl phosphate synthetase, small subunit N-terminal domain {Escherichia coli [TaxId: 562]} Length = 151

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: Carbamoyl phosphate synthetase, small subunit N-terminal domain
family: Carbamoyl phosphate synthetase, small subunit N-terminal domain
domain: Carbamoyl phosphate synthetase, small subunit N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  154 bits (390), Expect = 7e-48
 Identities = 75/147 (51%), Positives = 99/147 (67%)

Query: 7   NARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNT 66
           +A LVLEDG+ +  ++ GA+G+ VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIGN 
Sbjct: 3   SALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNV 62

Query: 67  GVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLR 126
           G N  DEES Q    GLVIR L +  SN+R  E L +YL   NI+ I D+DTR +TR LR
Sbjct: 63  GTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLR 122

Query: 127 QDGSLIGVLSTEESKSDQELLEMSRSW 153
           + G+  G +   ++      LE +R++
Sbjct: 123 EKGAQNGCIIAGDNPDAALALEKARAF 149

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} Length = 228

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  117 bits (293), Expect = 2e-32
 Identities = 51/126 (40%), Positives = 75/126 (59%), Gaps = 3/126 (2%)

Query: 157 GIDLISDVSGKEPFEWVEST--KPDWDFNTHERNSKTYRVIAYDFGIKHNILRRLASYGC 214
           G+DL  +V+  E + W + +           + +   + V+AYDFG K NILR L   GC
Sbjct: 3   GMDLAKEVTTAEAYSWTQGSWTLTGGLPQAKKEDELPFHVVAYDFGAKRNILRMLVDRGC 62

Query: 215 QIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQL 273
           ++ +VP+   A + LK+ PDG+  SNGPGDP+   YA+  +++ L   +PVFGIC+GHQL
Sbjct: 63  RLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQL 122

Query: 274 LGQALG 279
           L  A G
Sbjct: 123 LALASG 128

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} Length = 205

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

 Score = 76.1 bits (186), Expect = 3e-17
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 188 NSKTYRVIAYDFGIK--HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDP 245
           N   +R++  DFG +    + RR+   G    +       ++     P G++ S GP   
Sbjct: 2   NIHKHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPEST 61

Query: 246 SAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
           +      A        VPVFG+C G Q +   LG
Sbjct: 62  TEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLG 95

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 54.5 bits (130), Expect = 1e-09
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 203 HNILRRLASYGCQIIVVPS-TWPASETLKLKPDGVLFSNGPG---DPSAVPYAVAIVKEL 258
           +NI + +   G   IV+ +         ++ PD ++ S GPG       +  ++ ++K L
Sbjct: 15  YNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYL 74

Query: 259 LGKVPVFGICMGHQLLGQALG 279
             + P+ G+C+GHQ +G A G
Sbjct: 75  GKRTPILGVCLGHQAIGYAFG 95

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

 Score = 51.0 bits (121), Expect = 2e-08
 Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 4/81 (4%)

Query: 203 HNILRRLASYGCQIIVVPSTWPASETLK----LKPDGVLFSNGPGDPSAVPYAVAIVKEL 258
           +N++ +L + G Q+++  +   A   ++    ++   ++ S GPG PS       +++ L
Sbjct: 14  YNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGCMPELLQRL 73

Query: 259 LGKVPVFGICMGHQLLGQALG 279
            G++P+ GIC+GHQ + +A G
Sbjct: 74  RGQLPIIGICLGHQAIVEAYG 94

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 193 RVIAYDFGIK--HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPY 250
            ++  D G +  H I R L   G +  ++P+T P  E   + P G++FS GP   +    
Sbjct: 2   MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGPSLENTGNC 61

Query: 251 AVAIVKELLGKVPVFGICMGHQLLGQALG 279
              +       VP+ GIC+GHQL+ +  G
Sbjct: 62  EKVLEHYDEFNVPILGICLGHQLIAKFFG 90

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 5e-06
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 12/107 (11%)

Query: 184 THERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKL--KPDGVLFSNG 241
             +  +K  +     + I  + ++ L S G +++ V       +   L    +G+LF  G
Sbjct: 10  MQKCRNKVMKNYGRYY-IAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGG 68

Query: 242 PGDPSAVP--------YAVAIVKELLG-KVPVFGICMGHQLLGQALG 279
             D             Y ++I     G   PV+G C+G + L   + 
Sbjct: 69  SVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLIS 115

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.7 bits (94), Expect = 6e-05
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 4/83 (4%)

Query: 193 RVIAYDFGIK--HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPY 250
           ++   D G +  H   R L   G    +VP+   +SE      DG++ S G  +      
Sbjct: 3   KIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSE--LDGLDGLVLSGGAPNIDEELD 60

Query: 251 AVAIVKELLGKVPVFGICMGHQL 273
            +  V + +       + +    
Sbjct: 61  KLGSVGKYIDDHNYPILGICVGA 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	279
d1a9xb1	151	Carbamoyl phosphate synthetase, small subunit N-te	100.0
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	99.97
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	99.84
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	99.82
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	99.8
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	99.79
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	99.78
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	99.54
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	99.46
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	99.45
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	99.43
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	99.37
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	99.32
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	99.27
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	99.22
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	98.8
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	98.63
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	98.45
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	98.2
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	98.13
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	97.87
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	97.83
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	97.79
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	97.69
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	97.51
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	97.26
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	97.19
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	97.05
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	96.99
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	94.4
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	93.08
d2a6aa1	103	Hypothetical protein TM0874 {Thermotoga maritima [	86.71
d1t0ba_	240	GK2113 homologue {Bacillus stearothermophilus [Tax	85.94
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	84.1
d1okja1	106	Hypothetical protein YeaZ {Escherichia coli [TaxId	80.37

>d1a9xb1 c.8.3.1 (B:1502-1652) Carbamoyl phosphate synthetase, small subunit N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: Carbamoyl phosphate synthetase, small subunit N-terminal domain
family: Carbamoyl phosphate synthetase, small subunit N-terminal domain
domain: Carbamoyl phosphate synthetase, small subunit N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-74  Score=486.38  Aligned_cols=148  Identities=51%  Similarity=0.775  Sum_probs=138.8

Q ss_pred             cceeEEEecCCCEEEEEeeCCCcceeeeEEEeecCCcccccccCCCCCCcEEEeccCcccccCCCCCccccccceeeEEE
Q 039151            5 VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLV   84 (279)
Q Consensus         5 ~~~a~L~LedG~~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQiv~~TyP~IGNyGi~~~~~Es~~~~~~g~i   84 (279)
                      +++|+|+||||++|+|++||+.+++.||||||||||||||+||||||+||||+||||||||||+|.+|+||.+||++|+|
T Consensus         1 m~~a~L~LedG~~f~G~~~g~~~~~~GE~vFnT~mtGYqE~lTDPSY~gQii~fT~P~IGNyG~n~~d~ES~~~~~~GlI   80 (151)
T d1a9xb1           1 IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLV   80 (151)
T ss_dssp             CCEEEEEETTSCEEEEEECSCSEEEEEEEEEECCSSCHHHHHTCGGGBTEEEEECSSBCCTTCCCGGGCSSSSCCBSEEE
T ss_pred             CccEEEEeCCCCEEEEEecCCCcceeEEEEEEecccchhhhccCCCccCceEEeeehhcccccCCccchhhccccccchh
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCccccCCCHHHHHHHcCceEEecCchHHHHHHhhhcCceeEEEecCCCCChHHHHHhhcC
Q 039151           85 IRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRS  152 (279)
Q Consensus        85 v~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~~~  152 (279)
                      |||+|..|||||+++||++||++|+||||+||||||||||||++|+|+|+|++.+..+.+++.+++++
T Consensus        81 V~e~~~~pSn~rs~~sL~~~L~~~~IpgI~gIDTRaLtr~iR~~G~~~g~I~~~~~~d~~~~~~k~k~  148 (151)
T d1a9xb1          81 IRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARA  148 (151)
T ss_dssp             CSBCCSCCCCTTCCSCHHHHHHHTTCEEEESSCHHHHHHHHHHHCCEEEEEEESSSCCHHHHHHHHHH
T ss_pred             ccCccccCCcccccCCHHHHHHHcCCccccccCHHHHHHHHHhcCCceEEEecCCCCCHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999987554444455555544

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=7e-32  Score=239.64  Aligned_cols=125  Identities=41%  Similarity=0.834  Sum_probs=106.3

Q ss_pred             CCCCCcccccccCCeEEecCCCCCCCCC-Cc-cCCCCCccEEEEEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccC
Q 039151          155 IVGIDLISDVSGKEPFEWVESTKPDWDF-NT-HERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLK  232 (279)
Q Consensus       155 ~~~~~lv~~vs~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~  232 (279)
                      |.+.|||++|||+++|.|.+..+..... .. ...++.+.||+++|||+|+|++|.|+++|+.++|+|++++++++.+.+
T Consensus         1 ~~~~~l~~~Vstk~~y~w~~~~~~~~~~~~~~~~~~~~~~~i~~~D~G~k~~ilr~l~~~~~~~~v~p~~~~~~~i~~~~   80 (228)
T d1a9xb2           1 LNGMDLAKEVTTAEAYSWTQGSWTLTGGLPQAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMN   80 (228)
T ss_dssp             STTCBCHHHHSCSSCEEECCCCCBTTTBSCCCCCGGGCCEEEEEEESSCCHHHHHHHHHTTEEEEEEETTCCHHHHHTTC
T ss_pred             CCCCcccccccCCCCEEcCCCccccccCccccccCCCCcceEEEEeCCCcHHhHhHHHhcCceEEEcCCCCCHHHHHhcC
Confidence            3567999999999999997643211110 00 011233579999999999999999999999999999999999999999


Q ss_pred             CCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151          233 PDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       233 ~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~AlG  279 (279)
                      |||||||||||+|.+....++.+++++ .++||||||||||+||.|+|
T Consensus        81 pdgivlS~GPg~P~~~~~~~~~~~~~~~~~iPILGIClG~Qlia~~~G  128 (228)
T d1a9xb2          81 PDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASG  128 (228)
T ss_dssp             CSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEEEETHHHHHHHHHTT
T ss_pred             CCEEEEeCCCCccccchhHHHHHHHHHhCCCCEEEEEcChHHHHHHcC
Confidence            999999999999999888899999988 69999999999999999998

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=5.7e-21  Score=161.58  Aligned_cols=87  Identities=31%  Similarity=0.609  Sum_probs=77.4

Q ss_pred             cEEEEEEcCch--HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151          192 YRVIAYDFGIK--HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC  268 (279)
Q Consensus       192 ~~I~viD~G~k--~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC  268 (279)
                      |+|++||+|.+  +||.|+|+++|++++|+|++.+.+++.+..+|||++||||+.|.+. .....++++. .++|+||||
T Consensus         1 mmI~iiD~g~~~~~~i~~~L~~~G~~~~v~~~~~~~~~~~~~~~~gvilsgg~~~~~~~-~~~~~i~~~~~~~~PiLGIC   79 (188)
T d1wl8a1           1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGPSLENTG-NCEKVLEHYDEFNVPILGIC   79 (188)
T ss_dssp             CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTCCHHHHHHTCCSEEEECCCSCTTCCT-THHHHHHTGGGTCSCEEEET
T ss_pred             CEEEEEECCCcHHHHHHHHHHHCCCeEEEEeCCCCHHHHhhhccceeeeccCccccccc-ccccccccccccccceeehh
Confidence            58999999875  8999999999999999999999998888899999999999988754 4556677766 699999999


Q ss_pred             HHHHHHHHHcC
Q 039151          269 MGHQLLGQALG  279 (279)
Q Consensus       269 LGhQLLa~AlG  279 (279)
                      ||||+|+.++|
T Consensus        80 lG~Q~l~~~~G   90 (188)
T d1wl8a1          80 LGHQLIAKFFG   90 (188)
T ss_dssp             HHHHHHHHHHT
T ss_pred             hhhhhhhhhcC
Confidence            99999999987

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.4e-21  Score=166.43  Aligned_cols=88  Identities=25%  Similarity=0.491  Sum_probs=75.2

Q ss_pred             ccEEEEEEcCch--HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151          191 TYRVIAYDFGIK--HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI  267 (279)
Q Consensus       191 ~~~I~viD~G~k--~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI  267 (279)
                      +.||+|||||.+  ++|.|+|+++|++++|+|++.+.+++....|||+++|||||+|.+... ...++.++ .++|+|||
T Consensus         5 ~~kI~IiD~G~~~~~~I~r~lr~lg~~~~I~~~d~~~~~~~~~~~~giils~gp~~~~~~~~-~~~~~~~~~~~~PiLGI   83 (205)
T d1gpma2           5 KHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEENS-PRAPQYVFEAGVPVFGV   83 (205)
T ss_dssp             SSEEEEEECSCTTHHHHHHHHHHTTCEEEEEESCCCHHHHHHHCCSEEEECCCSSCTTSTTC-CCCCGGGGTSSSCEEEE
T ss_pred             cCeEEEEECCchHHHHHHHHHHHCCCEEEEECCCCCHHHHhhcCCCeEEecCCCCccchhhh-hhHHHHHHhCCCCEEEe
Confidence            358999999976  569999999999999999998888887789999999999999976432 23445555 68999999


Q ss_pred             cHHHHHHHHHcC
Q 039151          268 CMGHQLLGQALG  279 (279)
Q Consensus       268 CLGhQLLa~AlG  279 (279)
                      |||||+||.|+|
T Consensus        84 ClG~Qlla~~~G   95 (205)
T d1gpma2          84 CYGMQTMAMQLG   95 (205)
T ss_dssp             THHHHHHHHHHT
T ss_pred             ccchhhhhhhcC
Confidence            999999999997

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.80  E-value=1.1e-19  Score=154.75  Aligned_cols=87  Identities=28%  Similarity=0.489  Sum_probs=73.6

Q ss_pred             EEEEEEcC--chHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCChH--HHHHHHHHH-CCCCEee
Q 039151          193 RVIAYDFG--IKHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAVPY--AVAIVKELL-GKVPVFG  266 (279)
Q Consensus       193 ~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~~~--~i~~Ir~~~-~~~PILG  266 (279)
                      ++++||+.  +++||+++|+++|++++++|++ .+++++.+.++|||++||||++|.+...  ....+.+++ .++|+||
T Consensus         3 ~~liiD~~dsft~Ni~~~l~~lG~~~~vi~~d~~~~~~i~~~~~~gvilsgGp~~~~~~~~~~~~~~i~~~~~~~~PiLG   82 (195)
T d1qdlb_           3 LTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILG   82 (195)
T ss_dssp             EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEEE
T ss_pred             EEEEEECCCchHHHHHHHHHhCCCeEEEEeCCCCCHHHHHhhCCCccccCCCCCccccccccccchhhhhhhcCCCCEEE
Confidence            69999973  4899999999999999999986 4778887789999999999999987432  233455556 6999999


Q ss_pred             ecHHHHHHHHHcC
Q 039151          267 ICMGHQLLGQALG  279 (279)
Q Consensus       267 ICLGhQLLa~AlG  279 (279)
                      ||||||+|+.++|
T Consensus        83 IClG~Qll~~~~G   95 (195)
T d1qdlb_          83 VCLGHQAIGYAFG   95 (195)
T ss_dssp             ETHHHHHHHHHTT
T ss_pred             eehhhhhhhhccC
Confidence            9999999999997

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.79  E-value=6.2e-20  Score=157.18  Aligned_cols=86  Identities=27%  Similarity=0.420  Sum_probs=73.1

Q ss_pred             cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHH-HHHH-CCCCEeee
Q 039151          192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIV-KELL-GKVPVFGI  267 (279)
Q Consensus       192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~I-r~~~-~~~PILGI  267 (279)
                      +||++||+|.  .+++.|+|+++|++++++|++.+.+++.  ++|||||||||+++.+....+..+ +.+. .++|+|||
T Consensus         2 ~ki~iiD~g~~~~~~i~r~l~~lg~~~~i~~~d~~~~~~~--~~dgiIl~Gg~~~~~~~~~~~~~l~~~~~~~~~PilGI   79 (196)
T d2a9va1           2 LKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSELD--GLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILGI   79 (196)
T ss_dssp             CBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTSCGGGGT--TCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCEEEE
T ss_pred             CEEEEEECCCcHHHHHHHHHHHCCCeEEEEeCCCCHHHHh--cCCcEEEeccccccccccchhhhHHHHHhhcCceEEEe
Confidence            5899999985  5999999999999999999988877764  799999999999987665444444 4444 68999999


Q ss_pred             cHHHHHHHHHcC
Q 039151          268 CMGHQLLGQALG  279 (279)
Q Consensus       268 CLGhQLLa~AlG  279 (279)
                      |+|||+|+.++|
T Consensus        80 C~G~Qll~~~~g   91 (196)
T d2a9va1          80 CVGAQFIALHFG   91 (196)
T ss_dssp             THHHHHHHHHTT
T ss_pred             ehhhhhhhhccc
Confidence            999999999986

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=99.78  E-value=2.1e-19  Score=153.73  Aligned_cols=86  Identities=27%  Similarity=0.545  Sum_probs=72.6

Q ss_pred             EEEEEEc--CchHHHHHHHHHCCCeEEEEcCCCCh----hhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEe
Q 039151          193 RVIAYDF--GIKHNILRRLASYGCQIIVVPSTWPA----SETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVF  265 (279)
Q Consensus       193 ~I~viD~--G~k~~I~r~L~~~G~~v~vvp~~~~~----~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PIL  265 (279)
                      .|++||+  .+.+||++.|+++|++++|+|++.+.    +++...++|+|++|||||+|.+... ...+++.+ .++|+|
T Consensus         2 niliiD~~DSFt~ni~~~l~~lG~~~~v~~~~~~~~~~~~~l~~~~~~~iils~Gpg~~~~~~~-~~~i~~~l~~~iPiL   80 (192)
T d1i7qb_           2 DILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGC-MPELLQRLRGQLPII   80 (192)
T ss_dssp             EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCHHHHHHHHHHCSSEEEEECCCSSCGGGSTT-HHHHHHHHBTTBCEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHCCCeEEEEeCCCcccccHHHHHhcCCCeEEecCcccccccccc-chhhHHhhhcCccEE
Confidence            5999997  35899999999999999999987653    4455578999999999999987544 34456666 799999


Q ss_pred             eecHHHHHHHHHcC
Q 039151          266 GICMGHQLLGQALG  279 (279)
Q Consensus       266 GICLGhQLLa~AlG  279 (279)
                      |||||||+||.|+|
T Consensus        81 GIClG~Q~la~~~G   94 (192)
T d1i7qb_          81 GICLGHQAIVEAYG   94 (192)
T ss_dssp             EETHHHHHHHHHTT
T ss_pred             eeeHHHHHHHHHCC
Confidence            99999999999998

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=99.54  E-value=1.1e-14  Score=127.67  Aligned_cols=87  Identities=20%  Similarity=0.268  Sum_probs=66.8

Q ss_pred             ccEEEEEEcC---chHHHHHHHHHCCCeEEEEcCCC---ChhhhhccCCCeEEEcCCCCCCCCC------hHHHHHHHHH
Q 039151          191 TYRVIAYDFG---IKHNILRRLASYGCQIIVVPSTW---PASETLKLKPDGVLFSNGPGDPSAV------PYAVAIVKEL  258 (279)
Q Consensus       191 ~~~I~viD~G---~k~~I~r~L~~~G~~v~vvp~~~---~~~~i~~~~~DgIiLSgGPGdp~~~------~~~i~~Ir~~  258 (279)
                      .|||++|...   -..++.++|+++|++++++....   -++++  .++|||||+|||+++.+.      ..+.++|+++
T Consensus         3 ~mrvli~qh~~~e~~G~~~~~l~~~g~~~~~~~~~~~~~~p~~l--~~~d~iii~Ggp~~~~d~~~~~~~~~~~~~i~~~   80 (230)
T d1o1ya_           3 HVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPL--EEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEI   80 (230)
T ss_dssp             CCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCG--GGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCcHHHHHHHHHCCCEEEEEECCCCCcCCcch--hhCCEEEEcCCCcccccchhhhhhHHHHHHHHHH
Confidence            4899999532   24567888999999999986431   11223  369999999999988653      2346778887


Q ss_pred             H-CCCCEeeecHHHHHHHHHcC
Q 039151          259 L-GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       259 ~-~~~PILGICLGhQLLa~AlG  279 (279)
                      + .++|+||||+|||+||.|+|
T Consensus        81 ~~~~~PilGIC~G~Qlla~alG  102 (230)
T d1o1ya_          81 LKKEIPFLGICLGSQMLAKVLG  102 (230)
T ss_dssp             HHHTCCEEEETHHHHHHHHHTT
T ss_pred             HHhcceEEEeecCHHHHHHHhc
Confidence            7 69999999999999999997

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.46  E-value=1.1e-14  Score=124.47  Aligned_cols=83  Identities=18%  Similarity=0.362  Sum_probs=65.7

Q ss_pred             CccEEEEEEc-CchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHH-CCCC
Q 039151          190 KTYRVIAYDF-GIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELL-GKVP  263 (279)
Q Consensus       190 ~~~~I~viD~-G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~-~~~P  263 (279)
                      ..|||.|||+ |..+++.+.|++.|+++.++.   +++++  .++|+|||+||+.+....    ....+.|+++. .++|
T Consensus         5 ~~mkIgii~~~Gn~~s~~~al~~~G~~~~~v~---~~~~l--~~~D~lIlPGG~~~~~~~~l~~~~l~~~I~~~~~~gkP   79 (202)
T d1q7ra_           5 SNMKIGVLGLQGAVREHVRAIEACGAEAVIVK---KSEQL--EGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKP   79 (202)
T ss_dssp             CCCEEEEESCGGGCHHHHHHHHHTTCEEEEEC---SGGGG--TTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cCCEEEEEECCCCHHHHHHHHHHCCCcEEEEC---CHHHH--hcCCEEEECCCCcHHHHHHhhhhHHHHHHhhhccccce
Confidence            3689999999 888999999999999999985   34566  379999998766443211    12356788887 7999


Q ss_pred             EeeecHHHHHHHHH
Q 039151          264 VFGICMGHQLLGQA  277 (279)
Q Consensus       264 ILGICLGhQLLa~A  277 (279)
                      +||||+|||+|+..
T Consensus        80 iLGIClG~Qll~~~   93 (202)
T d1q7ra_          80 MFGTCAGLILLAKR   93 (202)
T ss_dssp             EEEETTHHHHHEEE
T ss_pred             eeeeehhhHHhhhh
Confidence            99999999999753

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=99.45  E-value=1.9e-15  Score=128.48  Aligned_cols=83  Identities=19%  Similarity=0.199  Sum_probs=59.3

Q ss_pred             cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCC------hHHHHHHHHHH-CC
Q 039151          192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAV------PYAVAIVKELL-GK  261 (279)
Q Consensus       192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~------~~~i~~Ir~~~-~~  261 (279)
                      |||+|||||.  .+++.++|++.|..+.+++.. .+.+++  ..+|+||| ||||++...      ....+.|++++ .+
T Consensus         1 MKI~IiDyg~gN~~si~~al~~~g~~~~~~~~~~~~~~~~--~~~D~lIl-PG~G~f~~~~~~l~~~~~~~~i~~~~~~~   77 (200)
T d1k9vf_           1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRN--DLYDLLFI-PGVGHFGEGMRRLRENDLIDFVRKHVEDE   77 (200)
T ss_dssp             CEEEEECSSSSCCHHHHHHHHHHTTTSSSCEEEEESSSCS--CCCSEEEE-CCCSCHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CEEEEEeCCCcHHHHHHHHHHHhccccccceEEEeCChHh--hccCeEEE-cChHHHHHHHHhhhccccccccccccccc
Confidence            6899999987  689999999888654332221 111222  36899999 788874322      12456788887 79


Q ss_pred             CCEeeecHHHHHHHHH
Q 039151          262 VPVFGICMGHQLLGQA  277 (279)
Q Consensus       262 ~PILGICLGhQLLa~A  277 (279)
                      +|+||||+|||+|+.+
T Consensus        78 ~PiLGIClG~QlL~~~   93 (200)
T d1k9vf_          78 RYVVGVCLGMQLLFEE   93 (200)
T ss_dssp             CEEEEETHHHHTTEEE
T ss_pred             ceEEEEecceeEEeee
Confidence            9999999999999754

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.43  E-value=3.6e-14  Score=120.75  Aligned_cols=83  Identities=17%  Similarity=0.342  Sum_probs=64.8

Q ss_pred             cEEEEEEc-CchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHH-CCCCEe
Q 039151          192 YRVIAYDF-GIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELL-GKVPVF  265 (279)
Q Consensus       192 ~~I~viD~-G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~-~~~PIL  265 (279)
                      ++|.|||+ |.-.+.+++|++.|+++.++..   ++++.  ++|+|||+||+.++...    ....+.|+++. .++|+|
T Consensus         2 ~~igv~~~~G~~~~~~~al~~~G~~~~~i~~---~~~l~--~~D~lIlPGG~~~~~~~~~~~~~~~~~I~~~~~~g~pil   76 (195)
T d2nv0a1           2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKR---PEQLN--EVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMF   76 (195)
T ss_dssp             CEEEEECSSSCCHHHHHHHHHTTCEEEEECS---GGGGG--GCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEE
T ss_pred             cEEEEEecCChHHHHHHHHHHCCCcEEEECC---HHHHh--hCCEEEECCCCccHHHHHhhhchhcchhhhhhhhcceee
Confidence            58999999 8888899999999999998853   45663  68999998765433211    12456778777 789999


Q ss_pred             eecHHHHHHHHHcC
Q 039151          266 GICMGHQLLGQALG  279 (279)
Q Consensus       266 GICLGhQLLa~AlG  279 (279)
                      |||+|||||+.++|
T Consensus        77 GIC~G~Qll~~~~~   90 (195)
T d2nv0a1          77 GTCAGLIILAKEIA   90 (195)
T ss_dssp             EETHHHHHHSBCCC
T ss_pred             eccccHHHHHhhhc
Confidence            99999999987653

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=99.32  E-value=1.6e-12  Score=107.99  Aligned_cols=80  Identities=20%  Similarity=0.311  Sum_probs=59.8

Q ss_pred             cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCC-----CChHHHHHHHHHH-CCCC
Q 039151          192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPS-----AVPYAVAIVKELL-GKVP  263 (279)
Q Consensus       192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~-----~~~~~i~~Ir~~~-~~~P  263 (279)
                      |||++||||+  .++|.|+|++.|+++.+++.   .+++  .++|++||+||+....     ........+.... .++|
T Consensus         1 Mki~IiD~G~gN~~si~~~l~~lg~~~~i~~~---~~~i--~~~d~lIlpG~g~~~~~~~~~~~~~~~~~~~~~~~~g~p   75 (195)
T d1ka9h_           1 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQD---PKAH--EEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLP   75 (195)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHTTCEEEEESS---TTSC--SSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCC
T ss_pred             CEEEEEeCCCcHHHHHHHHHHHCCCeEEEECC---HHHH--HHHhhhhcCCCccccchhhhccccCCcccccccccccch
Confidence            6899999987  68999999999999999853   3445  3689999976653211     0112334555555 7999


Q ss_pred             EeeecHHHHHHHH
Q 039151          264 VFGICMGHQLLGQ  276 (279)
Q Consensus       264 ILGICLGhQLLa~  276 (279)
                      +||||+|||+|+.
T Consensus        76 ilGiClG~qll~~   88 (195)
T d1ka9h_          76 FLGICVGMQVLYE   88 (195)
T ss_dssp             EEECTHHHHTTSS
T ss_pred             hhhhhhhhheeee
Confidence            9999999999974

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=5.3e-12  Score=113.28  Aligned_cols=78  Identities=19%  Similarity=0.274  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHCCCeEEEEcCCCChhhhhc--cCCCeEEEcCCCCCCCCCh------HHHHHHH--HHH-CCCCEeeecHH
Q 039151          202 KHNILRRLASYGCQIIVVPSTWPASETLK--LKPDGVLFSNGPGDPSAVP------YAVAIVK--ELL-GKVPVFGICMG  270 (279)
Q Consensus       202 k~~I~r~L~~~G~~v~vvp~~~~~~~i~~--~~~DgIiLSgGPGdp~~~~------~~i~~Ir--~~~-~~~PILGICLG  270 (279)
                      ..+++++++..|+++.++|++.+.+++..  ...|||||+||+.+.....      ..++...  ... .++|+||||+|
T Consensus        27 ~~sYvk~ie~aGa~vvpi~~~~~~~~~~~~l~~idGillpGG~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~PilGIC~G  106 (288)
T d1l9xa_          27 AASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLG  106 (288)
T ss_dssp             EHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHH
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHhhcCCeEecCCCCCcccccccccchHHHHHHHHHHHhhCCCCeEEEcHH
Confidence            46789999999999999999877665532  3689999999987654322      1122221  122 36899999999


Q ss_pred             HHHHHHHcC
Q 039151          271 HQLLGQALG  279 (279)
Q Consensus       271 hQLLa~AlG  279 (279)
                      ||+|+.++|
T Consensus       107 ~Qll~~~~g  115 (288)
T d1l9xa_         107 FEELSLLIS  115 (288)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhC
Confidence            999999875

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.22  E-value=1.4e-12  Score=111.26  Aligned_cols=82  Identities=17%  Similarity=0.235  Sum_probs=58.0

Q ss_pred             ccEEEEEEc-CchHHHHHHHHHCCC---eEEEEcCCCChhhhhccCCCeEEEcCCCCCCCC---C---hHHHHHHHHH-H
Q 039151          191 TYRVIAYDF-GIKHNILRRLASYGC---QIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA---V---PYAVAIVKEL-L  259 (279)
Q Consensus       191 ~~~I~viD~-G~k~~I~r~L~~~G~---~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~---~---~~~i~~Ir~~-~  259 (279)
                      .++|.|+|+ |...+..+.|++.|.   ++.++   .+.+++.  ++|+|||+||+..+..   .   ....+.+.++ .
T Consensus         2 ~ikIGvl~l~G~~~~~~~al~~lg~~~~~v~~~---~~~~~l~--~~D~lIlPGgg~~~~~~~~~~~~~~~~~~i~~~~~   76 (218)
T d2abwa1           2 EITIGVLSLQGDFEPHINHFIKLQIPSLNIIQV---RNVHDLG--LCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIH   76 (218)
T ss_dssp             CEEEEEECTTSCCHHHHHHHHTTCCTTEEEEEE---CSHHHHH--TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCcHHHHHHHHHHcCCCceEEEEe---CCHHHHh--hCCEEEEcCCCccHHHHHHHHHhccchHHHHHHHH
Confidence            478999999 888899999999884   44333   2567774  7999999876532211   1   1223334443 4


Q ss_pred             -CCCCEeeecHHHHHHHHH
Q 039151          260 -GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       260 -~~~PILGICLGhQLLa~A  277 (279)
                       .++|+||||+|||||+.+
T Consensus        77 ~~gkPilGIC~G~QlL~~~   95 (218)
T d2abwa1          77 VLKKPIWGTCAGCILLSKN   95 (218)
T ss_dssp             TSCCCEEEETHHHHHTEEE
T ss_pred             HcCCeEEEecHHHHHHHHh
Confidence             589999999999999754

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=98.80  E-value=1.6e-09  Score=97.41  Aligned_cols=90  Identities=16%  Similarity=0.127  Sum_probs=60.7

Q ss_pred             CccEEEEEEcC-c----hHHHHHHHHHCCCeEEEEc--CC----------------CChhhhhccCCCeEEEcCCCCCCC
Q 039151          190 KTYRVIAYDFG-I----KHNILRRLASYGCQIIVVP--ST----------------WPASETLKLKPDGVLFSNGPGDPS  246 (279)
Q Consensus       190 ~~~~I~viD~G-~----k~~I~r~L~~~G~~v~vvp--~~----------------~~~~~i~~~~~DgIiLSgGPGdp~  246 (279)
                      .++||+++++= -    ...++|.|......+.+..  ..                .+++++...++||+||+|+|-+..
T Consensus        18 rpL~I~iLNlMP~k~~TE~qf~rll~~~~~qv~~~~~~~~~~~~~~~~~~~~~~~y~~~~~i~~~~fDglIITGap~~~~   97 (281)
T d2ghra1          18 RALKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVETL   97 (281)
T ss_dssp             CCEEEEEECCCSSHHHHHHHHHHHTTSSSSCEEEEEECCCC------------CCEECHHHHTTCCEEEEEECCCSCTTS
T ss_pred             ceeEEEEEecCCcchhhHHHHHHHhcCCcceEEEEEeeecccccCCccHHHHHhcchhHHHhhcccCCEEEEeCCCCCcc
Confidence            45899999871 1    1236666665555554431  11                134556566899999999997653


Q ss_pred             C---C---hHHHHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151          247 A---V---PYAVAIVKELL-GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       247 ~---~---~~~i~~Ir~~~-~~~PILGICLGhQLLa~AlG  279 (279)
                      +   .   ....+.++.+. ..+|+||||+|||+++.|+|
T Consensus        98 ~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~~~lg  137 (281)
T d2ghra1          98 SFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHY  137 (281)
T ss_dssp             CGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHhcCCCeEEEcHHHHHHHHHhC
Confidence            2   2   23455666655 58999999999999999985

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.63  E-value=3e-08  Score=87.45  Aligned_cols=85  Identities=19%  Similarity=0.259  Sum_probs=58.7

Q ss_pred             cEEEEEE-c----CchHHHHHHHHHC----CCeEEEEcCCC------ChhhhhccCCCeEEEcCCCCCCCCChHHHHHHH
Q 039151          192 YRVIAYD-F----GIKHNILRRLASY----GCQIIVVPSTW------PASETLKLKPDGVLFSNGPGDPSAVPYAVAIVK  256 (279)
Q Consensus       192 ~~I~viD-~----G~k~~I~r~L~~~----G~~v~vvp~~~------~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir  256 (279)
                      .+|+++- |    -...|+.++|...    ++++.+...+.      +..+.+ .++|||+++||.|... .+..+..++
T Consensus         4 v~IaiVGKY~~l~DaY~Si~eAL~hA~~~~~~~v~i~wi~s~~l~~~~~~~~L-~~~dGIlvPGGFG~rG-~eGki~ai~   81 (250)
T d1vcoa1           4 VKIAIAGKYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAF-RDVSGILVPGGFGVRG-IEGKVRAAQ   81 (250)
T ss_dssp             EEEEEEESCC---CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHT-TTCSCEEECCCCSSTT-HHHHHHHHH
T ss_pred             EEEEEEeCCCCCchHHHHHHHHHHHhHHhcCCeEEEEEEcchhcchhhHHHHH-hcCCeEEecCCCCccc-hHHHHHHHH
Confidence            4566663 2    1256788888643    56665543221      222333 3799999999998654 356788888


Q ss_pred             HHH-CCCCEeeecHHHHHHHHHc
Q 039151          257 ELL-GKVPVFGICMGHQLLGQAL  278 (279)
Q Consensus       257 ~~~-~~~PILGICLGhQLLa~Al  278 (279)
                      .+- .++|+||||||||++..++
T Consensus        82 yARen~iPfLGIClGmQ~avIEf  104 (250)
T d1vcoa1          82 YARERKIPYLGICLGLQIAVIEF  104 (250)
T ss_dssp             HHHHTTCCEEEETHHHHHHHHHH
T ss_pred             HHHHcchhHHHHHHHHHHHHHHH
Confidence            887 7999999999999998764

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=9.1e-08  Score=84.66  Aligned_cols=85  Identities=16%  Similarity=0.226  Sum_probs=58.9

Q ss_pred             cEEEEEE-c-C---chHHHHHHHHH----CCCeEEEEcCCCC-hh----hhhccCCCeEEEcCCCCCCCCChHHHHHHHH
Q 039151          192 YRVIAYD-F-G---IKHNILRRLAS----YGCQIIVVPSTWP-AS----ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKE  257 (279)
Q Consensus       192 ~~I~viD-~-G---~k~~I~r~L~~----~G~~v~vvp~~~~-~~----~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~  257 (279)
                      .+|+++- | .   ...|+.++|..    .++++.+...+.+ .+    +.+ .++|||+++||-|.-. .+..+..++.
T Consensus         4 v~Ia~vGKY~~l~DaY~Sv~eaL~ha~~~~~~~v~i~wi~s~~~e~~~~~~L-~~~dGIlvPGGFG~RG-~eGki~ai~y   81 (258)
T d1s1ma1           4 VTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEIL-KGLDAILVPGGFGYRG-VEGMITTARF   81 (258)
T ss_dssp             EEEEEEESSCSSGGGGHHHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTT-TTCSEEEECCCCSSTT-HHHHHHHHHH
T ss_pred             eEEEEEeCcCCCchhHHhHHHHHHHhHHhcCCeEEEEEEccccccccccccc-cccccEEeecccCcCC-HHHHHHHHHH
Confidence            4566663 2 2   25678888864    4666666544321 11    112 4799999999988543 4677888998


Q ss_pred             HH-CCCCEeeecHHHHHHHHHc
Q 039151          258 LL-GKVPVFGICMGHQLLGQAL  278 (279)
Q Consensus       258 ~~-~~~PILGICLGhQLLa~Al  278 (279)
                      +. .++|+||||||||++..++
T Consensus        82 ARen~iPfLGIClGmQ~avIE~  103 (258)
T d1s1ma1          82 ARENNIPYLGICLGMQVALIDY  103 (258)
T ss_dssp             HHHTTCCEEEETHHHHHHHHHH
T ss_pred             HHHcCccHHHHHHHHHHHHHHH
Confidence            88 7999999999999998764

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.20  E-value=1.3e-06  Score=77.19  Aligned_cols=86  Identities=14%  Similarity=0.153  Sum_probs=60.0

Q ss_pred             CccEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCCC---ChhhhhccCCCeEEEcCCC--CCCCCCh-----------H
Q 039151          190 KTYRVIAYDF-GI--KHNILRRLASYGCQIIVVPSTW---PASETLKLKPDGVLFSNGP--GDPSAVP-----------Y  250 (279)
Q Consensus       190 ~~~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~~---~~~~i~~~~~DgIiLSgGP--Gdp~~~~-----------~  250 (279)
                      +++||+||-+ |.  .....++|+..|++++.|.++.   ...++  .++|+|+|+||-  ||--...           .
T Consensus         5 ~kpkvaVl~~pGtNcd~e~~~Af~~aG~~~~~v~~~dl~~~~~~L--~~~~~lvipGGFSygD~l~ag~~~a~~~~~~~~   82 (262)
T d1t3ta2           5 ARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGL--GNFHALVACGGFSYGDVLGAGEGWAKSILFNHR   82 (262)
T ss_dssp             CCCEEEEEECTTBCCHHHHHHHHHHTTCEEEEEEHHHHHHTSCCG--GGCSEEEECCBCGGGGTTSTTHHHHHHHHHSHH
T ss_pred             CCCeEEEEeCCCCCcHHHHHHHHHHcCCceEEEEeeecccCcccc--cccceEEEeccccccccccchhHHHhhhhhhhH
Confidence            4579999998 74  6788999999999999986531   11122  379999999875  3432211           1


Q ss_pred             HHHHHHHHH--CCCCEeeecHHHHHHHHH
Q 039151          251 AVAIVKELL--GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       251 ~i~~Ir~~~--~~~PILGICLGhQLLa~A  277 (279)
                      ..+.+..++  .++|+||||-|+|+|.+.
T Consensus        83 ~~~~~~~f~~~~~~~iLGICNGfQiL~el  111 (262)
T d1t3ta2          83 VRDEFETFFHRPQTLALGVCNGCQMMSNL  111 (262)
T ss_dssp             HHHHHHHHHHSSSCEEEEETHHHHHHHTT
T ss_pred             HHHHHHHHhhcCCceEEeechHHHHHHHh
Confidence            223344444  489999999999999864

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=2e-06  Score=73.82  Aligned_cols=75  Identities=15%  Similarity=0.240  Sum_probs=57.5

Q ss_pred             HHHHHHHCCCeEEEEcCCC---------------------------------ChhhhhccCCCeEEEcCCCCCCCC----
Q 039151          205 ILRRLASYGCQIIVVPSTW---------------------------------PASETLKLKPDGVLFSNGPGDPSA----  247 (279)
Q Consensus       205 I~r~L~~~G~~v~vvp~~~---------------------------------~~~~i~~~~~DgIiLSgGPGdp~~----  247 (279)
                      .+..|++.|++++++..+.                                 +.+++...+||+|||+||.|...+    
T Consensus        25 ~~~~L~raG~~v~~~sp~~~~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~~v~~~~yDaliiPGG~g~~~~l~~~  104 (217)
T d1vhqa_          25 TLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNF  104 (217)
T ss_dssp             HHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGCCGGGCSEEEECCSTHHHHTSBCH
T ss_pred             HHHHHHHCCCEEEEEecCCCccceeccCCCcccccccceeeeeeeeeccccCChHHCCHhHCCEEEecCCcccHHHHhhh
Confidence            5577899999999884321                                 234444468999999999885322    


Q ss_pred             ---------ChHHHHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151          248 ---------VPYAVAIVKELL-GKVPVFGICMGHQLLGQALG  279 (279)
Q Consensus       248 ---------~~~~i~~Ir~~~-~~~PILGICLGhQLLa~AlG  279 (279)
                               .+...++++++. .++|+..||.|-++|+.+++
T Consensus       105 ~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~l~~~~~  146 (217)
T d1vhqa_         105 ASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFD  146 (217)
T ss_dssp             HHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCS
T ss_pred             hccccccccCHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhc
Confidence                     245778889888 79999999999999998754

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=97.87  E-value=1.3e-05  Score=65.45  Aligned_cols=86  Identities=12%  Similarity=0.072  Sum_probs=63.1

Q ss_pred             cEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC---------------ChhhhhccCCCeEEEcCCCCCCC---CC
Q 039151          192 YRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW---------------PASETLKLKPDGVLFSNGPGDPS---AV  248 (279)
Q Consensus       192 ~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgGPGdp~---~~  248 (279)
                      .||+++=+ |+.    ...+..|++.|++++++..+.               +.++....++|++++.||++.+.   ..
T Consensus         4 rkI~ilv~dG~~~~e~~~~~~~l~~ag~~v~ivs~~~~~v~~~~g~~v~~d~~~~~~~~~~~dalivpgg~~~~~~~~~~   83 (184)
T d1sy7a1           4 RRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKN   83 (184)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHHTC
T ss_pred             cEEEEEecCCCcHHHHHHHHHHHHHCCCEEEEEEecCCcccccccccccccccccccccccceEEEEeeccccccccccc
Confidence            47776654 652    345678889999999884321               12223334789999998876543   34


Q ss_pred             hHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          249 PYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       249 ~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      +..+++++++. .++||.+||-|.++|+.|
T Consensus        84 ~~~~~~l~~~~~~~k~i~aic~G~~~La~a  113 (184)
T d1sy7a1          84 GRALHWIREAFGHLKAIGATGEAVDLVAKA  113 (184)
T ss_dssp             HHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred             cchhHHHHHHHhcCCceEEechHHHHHHHc
Confidence            67888999998 799999999999999986

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.83  E-value=2.7e-05  Score=62.87  Aligned_cols=86  Identities=20%  Similarity=0.264  Sum_probs=60.9

Q ss_pred             cEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC---------------ChhhhhccCCCeEEEcCCCCCC--CCCh
Q 039151          192 YRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW---------------PASETLKLKPDGVLFSNGPGDP--SAVP  249 (279)
Q Consensus       192 ~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgGPGdp--~~~~  249 (279)
                      |||+++=+ |+.    ...++.|++.|++++++..+.               +++++...++|+|+++||++..  ...+
T Consensus         1 mKv~il~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~~V~~~~g~~i~~d~~~~~~~~~~~d~viipGg~~~~~~~~~~   80 (166)
T d1g2ia_           1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERGTITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNE   80 (166)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTTCH
T ss_pred             CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCceEeecCCcEEeccccHHHcCcccccEEEEecccchhhhccCh
Confidence            45665543 552    234567888999999885431               1233333479999999997632  2346


Q ss_pred             HHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          250 YAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       250 ~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      ..++++|++. .++|+.+||-|..+|+.|
T Consensus        81 ~~~~~l~~~~~~~k~i~aiC~G~~~La~a  109 (166)
T d1g2ia_          81 KAVSIARKMFSEGKPVASICHGPQILISA  109 (166)
T ss_dssp             HHHHHHHHHHHTTCCEEEETTTTHHHHHH
T ss_pred             HHHHHHHHHHhcCCeeeeccccchhhhhc
Confidence            7889999888 799999999999999986

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=97.79  E-value=1.5e-05  Score=64.02  Aligned_cols=87  Identities=15%  Similarity=0.042  Sum_probs=62.7

Q ss_pred             ccEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC---------------ChhhhhccCCCeEEEcCCCCCC-CCCh
Q 039151          191 TYRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW---------------PASETLKLKPDGVLFSNGPGDP-SAVP  249 (279)
Q Consensus       191 ~~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgGPGdp-~~~~  249 (279)
                      ++||+++=+ |+.    ...++.|++.|+++.++-.+.               ++++.....||+|+|.||+++. ...+
T Consensus         3 grkVaiLv~dg~~~~e~~~~~~~l~~ag~~v~~v~~~~~~v~~~~G~~i~~d~t~~~~~~~~yDaliiPGG~~~~l~~~~   82 (156)
T d1p80a1           3 GRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCGNIADIADNG   82 (156)
T ss_dssp             TCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCSCTHHHHTCH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecccccccccceeEEeeeeeeccCCcccCCEEEeeCCchHHHhcch
Confidence            357877744 653    346788888999998874432               1222223479999999886542 2346


Q ss_pred             HHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          250 YAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       250 ~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      ..+++|+++. ..+||..||-|.|+|+.+
T Consensus        83 ~~~~~i~e~~~~~K~I~aic~g~~~La~a  111 (156)
T d1p80a1          83 DANYYLMEAYKHLKPIALAGDARKFKATI  111 (156)
T ss_dssp             HHHHHHHHHHHTTCCEEEEGGGGGGGGTT
T ss_pred             HHHHHHHHHHHcCCeEEEECchHHHHHHc
Confidence            7889999998 799999999999999765

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=7.4e-05  Score=60.68  Aligned_cols=85  Identities=20%  Similarity=0.305  Sum_probs=59.8

Q ss_pred             EEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCC--C---------------ChhhhhccCCCeEEEcCCCCCC--CCC
Q 039151          193 RVIAYDF-GIK----HNILRRLASYGCQIIVVPST--W---------------PASETLKLKPDGVLFSNGPGDP--SAV  248 (279)
Q Consensus       193 ~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~--~---------------~~~~i~~~~~DgIiLSgGPGdp--~~~  248 (279)
                      ||+++=+ |+.    ...+..|++.|++++++...  .               +.+++...++|+||++||++--  ...
T Consensus         3 kIail~~dgf~~~E~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~~~~~~yDalivpGG~~~~~l~~~   82 (170)
T d1oi4a1           3 KIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGD   82 (170)
T ss_dssp             EEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHHHHHTTS
T ss_pred             EEEEEeCCCcCHHHHHHHHHHHHHCCCEEEeccCCCCceeeeeccCeEEecCCcHHHCChhhceEEEEccchhhhhhccC
Confidence            5666543 552    23567788899998777431  0               1222323478999999997521  234


Q ss_pred             hHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          249 PYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       249 ~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      +..+++++++. .++||.+||-|-.+|+.+
T Consensus        83 ~~~~~~i~~~~~~~k~i~aiC~g~~~La~~  112 (170)
T d1oi4a1          83 NRFVTFTRDFVNSGKPVFAICHGPQLLISA  112 (170)
T ss_dssp             HHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred             hHHHHHHHHHhhcCCeeeecccchHHHhhh
Confidence            67889999988 799999999999999875

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00011  Score=60.36  Aligned_cols=85  Identities=20%  Similarity=0.149  Sum_probs=60.6

Q ss_pred             EEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCC--CC--------------hhhhhc-cCCCeEEEcCCCCCCCC---
Q 039151          193 RVIAYDF-GIK----HNILRRLASYGCQIIVVPST--WP--------------ASETLK-LKPDGVLFSNGPGDPSA---  247 (279)
Q Consensus       193 ~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~--~~--------------~~~i~~-~~~DgIiLSgGPGdp~~---  247 (279)
                      ||+++=+ |+.    -..++.|++.|++++++..+  .+              .+++.. .++|+|+|+||.+.+..   
T Consensus         3 kvlvll~~Gfe~~E~~~p~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipGG~~~~~~l~~   82 (186)
T d1p5fa_           3 RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSE   82 (186)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHHTCCCSEEEECCCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEEecCCcceecCCCccccCccchhccCCcccccEEEEecCccccccccc
Confidence            6666554 552    23457788899999988532  11              123222 37999999998765432   


Q ss_pred             ChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          248 VPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       248 ~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      .+...+++|++. .++|+.+||-|.++|+.|
T Consensus        83 ~~~l~~~lr~~~~~~k~i~aiC~G~~~La~a  113 (186)
T d1p5fa_          83 SAAVKEILKEQENRKGLIAAICAGPTALLAH  113 (186)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             hHHHHHHHHHhhccccceeecccCcchhhhc
Confidence            456788899888 799999999999999975

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.26  E-value=0.0001  Score=62.71  Aligned_cols=73  Identities=14%  Similarity=0.119  Sum_probs=53.7

Q ss_pred             HHHHHHHCCCeEEEEcCCC----------------------------ChhhhhccCCCeEEEcCCCCCC---CCChHHHH
Q 039151          205 ILRRLASYGCQIIVVPSTW----------------------------PASETLKLKPDGVLFSNGPGDP---SAVPYAVA  253 (279)
Q Consensus       205 I~r~L~~~G~~v~vvp~~~----------------------------~~~~i~~~~~DgIiLSgGPGdp---~~~~~~i~  253 (279)
                      -++.|++.|++|+++...-                            +.+++...+||+|+|+||.|..   ...+...+
T Consensus        31 P~~~l~~aG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~dYd~v~iPGG~g~~~~l~~~~~l~~  110 (221)
T d1u9ca_          31 PYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQY  110 (221)
T ss_dssp             HHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHH
T ss_pred             HHHHHHHCCCEEEEEecCCCcceeccCccccccchhHHHHHHhhCCCChhHCCHhHCCEEEeCCCCchhhcchhhHHHHH
Confidence            3467888999999885320                            1223334579999999998843   23456778


Q ss_pred             HHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          254 IVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       254 ~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      .++++. .++|+..||.|-++|+.+
T Consensus       111 li~~~~~~~k~iaAIChgp~~l~~a  135 (221)
T d1u9ca_         111 VLQQFAEDGRIIAAVCHGPSGLVNA  135 (221)
T ss_dssp             HHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             HHHHHHhccCcceeecccceeeecc
Confidence            888888 799999999999988653

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.19  E-value=0.00039  Score=57.38  Aligned_cols=74  Identities=18%  Similarity=0.185  Sum_probs=52.2

Q ss_pred             HHHHHHHH-CCCeEEEEcCCC---------------ChhhhhccCCCeEEEcCCCCC-CCCChHHHHHHHHHH-CCCCEe
Q 039151          204 NILRRLAS-YGCQIIVVPSTW---------------PASETLKLKPDGVLFSNGPGD-PSAVPYAVAIVKELL-GKVPVF  265 (279)
Q Consensus       204 ~I~r~L~~-~G~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgGPGd-p~~~~~~i~~Ir~~~-~~~PIL  265 (279)
                      .+...|+. .|+++.++..+-               +.+++...++|.|+|+||++. ....+..++++|++. .++|+.
T Consensus        19 ~~~~~l~~~~g~~v~~vs~~~~~V~s~~G~~v~~d~~l~~~~~~~~D~liipGG~~~~~~~~~~l~~~lr~~~~~~~~i~   98 (188)
T d2fexa1          19 LLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAADLGGLVKRFRDRDRLVA   98 (188)
T ss_dssp             HHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHHTCCCCCHHHHHHHHHTTCEEE
T ss_pred             HHHHHHhhcCCcEEEEEeCCCCcEEcCCCCEEeecCchHHCChhhccEEEecCCccccccccHHHHHHHHHHHHhCCEEE
Confidence            34555654 799998875431               122333347999999988752 122345788899888 799999


Q ss_pred             eecHHHHHHHHH
Q 039151          266 GICMGHQLLGQA  277 (279)
Q Consensus       266 GICLGhQLLa~A  277 (279)
                      +||-|-.+|+.|
T Consensus        99 aiC~g~~~La~a  110 (188)
T d2fexa1          99 GICAAASALGGT  110 (188)
T ss_dssp             EETHHHHHHHHT
T ss_pred             EecchhHHHHHc
Confidence            999999999875

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00028  Score=58.64  Aligned_cols=83  Identities=17%  Similarity=0.185  Sum_probs=57.5

Q ss_pred             EEEEcCch----HHHHHHHHHCCCeEEEEcCCC------------------ChhhhhccCCCeEEEcCCCCCCC---CCh
Q 039151          195 IAYDFGIK----HNILRRLASYGCQIIVVPSTW------------------PASETLKLKPDGVLFSNGPGDPS---AVP  249 (279)
Q Consensus       195 ~viD~G~k----~~I~r~L~~~G~~v~vvp~~~------------------~~~~i~~~~~DgIiLSgGPGdp~---~~~  249 (279)
                      +++.-|+.    -..+..|++.|++++++....                  +.+++...++|+|+++||++.+.   +.+
T Consensus         6 i~l~~Gfe~~E~~~p~d~L~rag~~v~~~s~~~~~~~~v~~~~G~~v~~d~~~~d~~~~d~D~liiPGG~~~~~~l~~~~   85 (195)
T d2ab0a1           6 VCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDST   85 (195)
T ss_dssp             EEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHHHHCH
T ss_pred             EEecCCccHHHHHHHHHHHHHCCCEEEEEEEcCCCCceEEeCCCcEeecCcChHHcCcccceEEEEccccCccccccccH
Confidence            34444763    224566788899998774210                  12334345799999999976543   246


Q ss_pred             HHHHHHHHHH-CCCCEeeecHH-HHHHHHH
Q 039151          250 YAVAIVKELL-GKVPVFGICMG-HQLLGQA  277 (279)
Q Consensus       250 ~~i~~Ir~~~-~~~PILGICLG-hQLLa~A  277 (279)
                      ...+++|++. .++|+.+||-| ..+|+.+
T Consensus        86 ~l~~~lr~~~~~gk~i~aiC~g~a~lLa~a  115 (195)
T d2ab0a1          86 LLVETVKQFHRSGRIVAAICAAPATVLVPH  115 (195)
T ss_dssp             HHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred             HHHHHHHHHhhccceeeeeeccchhhhhhc
Confidence            7788999988 79999999999 6787764

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.99  E-value=0.00028  Score=60.67  Aligned_cols=50  Identities=16%  Similarity=0.115  Sum_probs=38.8

Q ss_pred             hhccCCCeEEEcCCCCCCC---CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          228 TLKLKPDGVLFSNGPGDPS---AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       228 i~~~~~DgIiLSgGPGdp~---~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      +...+||+|+|.||.|...   +.+...++++++. .++||..||.|-++|+.+
T Consensus        93 v~~~~ydav~ipGG~g~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~~L~~~  146 (236)
T d1qvwa_          93 VNADDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGL  146 (236)
T ss_dssp             CCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             CCHhHCCEEEEeCCccchhcchhhhHHHHHHHHHHhcCCeEEEehhhHHHHHHH
Confidence            3335799999999987432   3456778888888 799999999999877543

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=94.40  E-value=0.013  Score=51.43  Aligned_cols=46  Identities=13%  Similarity=0.177  Sum_probs=37.2

Q ss_pred             CCCeEEEcCCCCCCCC---ChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151          232 KPDGVLFSNGPGDPSA---VPYAVAIVKELL-GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       232 ~~DgIiLSgGPGdp~~---~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A  277 (279)
                      +||+|++.||-|...+   .+...++++++. .++||..||.|-..|..+
T Consensus       141 dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a  190 (279)
T d1n57a_         141 EYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLAL  190 (279)
T ss_dssp             SEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGG
T ss_pred             cccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccchhhhhc
Confidence            7999999999885443   356778888888 799999999998877543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=93.08  E-value=0.052  Score=38.81  Aligned_cols=70  Identities=13%  Similarity=0.149  Sum_probs=47.6

Q ss_pred             ccEEEEEEcCchH-HHHHHHHHCCCeEEEEcCCCC---hhhhh--------------ccCCCeEEEcCCCCCCCCChHHH
Q 039151          191 TYRVIAYDFGIKH-NILRRLASYGCQIIVVPSTWP---ASETL--------------KLKPDGVLFSNGPGDPSAVPYAV  252 (279)
Q Consensus       191 ~~~I~viD~G~k~-~I~r~L~~~G~~v~vvp~~~~---~~~i~--------------~~~~DgIiLSgGPGdp~~~~~~i  252 (279)
                      +.+|+|+=+|... ++.++|.+.|++|.++.....   .+++.              -.++|.||+|+|-  |.+.    
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SPGi--~~~~----   78 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGI--ALAH----   78 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECTTS--CTTS----
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEECCCC--CCCC----
Confidence            3579999998754 789999999999999865321   11110              1367999998763  4332    


Q ss_pred             HHHHHHH-CCCCEee
Q 039151          253 AIVKELL-GKVPVFG  266 (279)
Q Consensus       253 ~~Ir~~~-~~~PILG  266 (279)
                      +.++++. .++||.|
T Consensus        79 ~~~~~a~~~gi~iiG   93 (93)
T d2jfga1          79 PSLSAAADAGIEIVG   93 (93)
T ss_dssp             HHHHHHHHTTCEEEC
T ss_pred             HHHHHHHHcCCCeEC
Confidence            3455555 6899876

>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: YeaZ-like
domain: Hypothetical protein TM0874
species: Thermotoga maritima [TaxId: 2336]

Probab=86.71  E-value=0.27  Score=35.78  Aligned_cols=46  Identities=22%  Similarity=0.290  Sum_probs=35.2

Q ss_pred             CCCeEEEcCCCCCCCCChHHHHHHHHHH--CCCCEeeecHHHHHHHHHc
Q 039151          232 KPDGVLFSNGPGDPSAVPYAVAIVKELL--GKVPVFGICMGHQLLGQAL  278 (279)
Q Consensus       232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--~~~PILGICLGhQLLa~Al  278 (279)
                      +.|.|+++.|||+..-..-.+...+.+.  .++|++||+- +++||.+.
T Consensus        54 di~~i~v~~GPGsfTglRig~s~akgla~~~~ip~~gis~-l~~lA~~~  101 (103)
T d2a6aa1          54 DLDVVGVGIGPGGLTGLRVGIATVVGLVSPYDIPVAPLNS-FEMTAKSC  101 (103)
T ss_dssp             GCSEEEEECCSSCHHHHHHHHHHHHHHHGGGTCCEEEECH-HHHHHHTC
T ss_pred             HhHHHhhcCCCCcchhHHHHHHHHHHHHHHcCCCEEEeCH-HHHHHHhC
Confidence            5689999999998875555666666665  5999999984 66777653

>d1t0ba_ c.23.16.6 (A:) GK2113 homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: ThuA-like
domain: GK2113 homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.94  E-value=1.7  Score=35.90  Aligned_cols=63  Identities=13%  Similarity=-0.019  Sum_probs=40.4

Q ss_pred             HHHHHHHHCCCeEEEEcCCC-----ChhhhhccCCCeEEEc-CCCCCCCCChHHHHHHHHHH-CCCCEeeecH
Q 039151          204 NILRRLASYGCQIIVVPSTW-----PASETLKLKPDGVLFS-NGPGDPSAVPYAVAIVKELL-GKVPVFGICM  269 (279)
Q Consensus       204 ~I~r~L~~~G~~v~vvp~~~-----~~~~i~~~~~DgIiLS-gGPGdp~~~~~~i~~Ir~~~-~~~PILGICL  269 (279)
                      .|...|.+.|+++++.-.+.     +.+.|  .++|.||+. +..++ ...+...+.+++++ .+++++||=-
T Consensus        31 ~ia~~l~~~g~~v~tat~~e~~~~~~~~~L--~~~Dvli~~~~~~~~-~l~~~q~~al~~~v~~G~G~VglH~  100 (240)
T d1t0ba_          31 VIASYLAEAGFDAATAVLDEPEHGLTDEVL--DRCDVLVWWGHIAHD-EVKDEVVERVHRRVLEGMGLIVLHS  100 (240)
T ss_dssp             HHHHHHHHTTCEEEEEESSSGGGGCCHHHH--HTCSEEEEECSSCGG-GSCHHHHHHHHHHHHTTCEEEEEGG
T ss_pred             HHHHHhhcCCceEEEEEecCccccCCHHHH--hcCCEEEEeCCCCCC-cCCHHHHHHHHHHHHcCCCEEEEec
Confidence            45567888999998753322     22333  389999874 34332 22345667777777 7899999843

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=84.10  E-value=0.79  Score=36.49  Aligned_cols=77  Identities=19%  Similarity=0.156  Sum_probs=49.8

Q ss_pred             CCccEEEEEEcCc------hHHHHHHHHHCCCeEEEEcCCCChhhhh----ccCCCeEEEcCCCCC-CCCChHHHHHHHH
Q 039151          189 SKTYRVIAYDFGI------KHNILRRLASYGCQIIVVPSTWPASETL----KLKPDGVLFSNGPGD-PSAVPYAVAIVKE  257 (279)
Q Consensus       189 ~~~~~I~viD~G~------k~~I~r~L~~~G~~v~vvp~~~~~~~i~----~~~~DgIiLSgGPGd-p~~~~~~i~~Ir~  257 (279)
                      +.++||++--.|.      +.-+.+.|+..|++|.....+.+++++.    +.++|.|.||.--+. ....+..++.+++
T Consensus        35 gr~pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg~~~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~~L~~  114 (168)
T d7reqa2          35 GRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDK  114 (168)
T ss_dssp             SSCCEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECCTTBCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCccHHHHHHHHHHHHHHhCCcceecCCCcCcHHHHHHHHHccCCCEEEEecCcccchHHHHHHHHHHHh
Confidence            3456777776653      3446678899999998877777777764    368999999955443 1223344555555


Q ss_pred             HH-CCCCEe
Q 039151          258 LL-GKVPVF  265 (279)
Q Consensus       258 ~~-~~~PIL  265 (279)
                      .- .++|++
T Consensus       115 ~g~~~v~Vi  123 (168)
T d7reqa2         115 LGRPDILIT  123 (168)
T ss_dssp             TTCTTSEEE
T ss_pred             cCCCCeEEE
Confidence            42 356664

>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: YeaZ-like
domain: Hypothetical protein YeaZ
species: Escherichia coli [TaxId: 562]

Probab=80.37  E-value=0.55  Score=34.32  Aligned_cols=45  Identities=20%  Similarity=0.480  Sum_probs=33.9

Q ss_pred             CCCeEEEcCCCCCCCCChHHHHHHHHHH--CCCCEeeecHHHHHHHHH
Q 039151          232 KPDGVLFSNGPGDPSAVPYAVAIVKELL--GKVPVFGICMGHQLLGQA  277 (279)
Q Consensus       232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--~~~PILGICLGhQLLa~A  277 (279)
                      +.|+|+++-|||+..-..-.+...+.+-  .++|++||. -++++|..
T Consensus        54 di~~i~v~~GPGsfTglRig~s~akgla~~~~ip~~~v~-sl~~la~~  100 (106)
T d1okja1          54 DINALAYGRGPGSFTGVRIGIGIAQGLALGAELPMIGVS-TLMTMAQG  100 (106)
T ss_dssp             GCCEEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEEE-HHHHHHHH
T ss_pred             eeeEEEEeeccCccccchHHHHHHHHHHHHcCCCEEEeC-HHHHHHHH
Confidence            5799999999998775555566666554  699999998 46666653