Citrus Sinensis ID: 039234

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
Protein Sequence
GVVYDKTALNQEKFATSVTVGGEDRAYVLYGRVMEGLLGNSGREEFSIEEVRSKKENEEENVWVFVLLGLGLAYFLFWRFQMSKLVRDINKKTN
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEccccEEEEEEEEEHHHcccccccccEEEEEEEEcccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEccccccccccEEEEEccccEEEEEEEEHHcccccccccccEEEEEEEccccccccHHEEEHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
gvvydktalnqekfatsvtvggedraYVLYGRVMEgllgnsgreefsIEEVRSKKENEEENVWVFVLLGLGLAYFLFWRFQMSKLVRDINKKTN
Flexible Loop (DISEMBL)
gvvydktalnqekfatsvtvggedrAYVLYGRVMEgllgnsgreefSIEEvrskkeneeenVWVFVLLGLGLAYFLFWRFQMSKLVRDINKKTN
Low Complexity Region (SEG)
GVVYDKTALNQEKFATSVTVGGEDRAYVLYGRVMEGLLGNSGREEFSIeevrskkeneeenvWVFVLLGLGLAYFLFWRFQMSKLVRDINKKTN
Disordered region (IsUnstruct)
***********EKFATSVTVGGEDRAYVLYGRVMEGLLG*********************NVWVFVLLGLGLAYFLFWRFQMSKLVR*******
Disordered Region (DISOPRED)
**VYDKTALNQEKFATSVTVGGEDRAYVLYGRVMEGLLGNSGREEF************E**VWVFVLLGLGLAYFLFWRFQMSKLVRDI*****
Disordered Region (DISEMBL)
GVVYDKTALNQEKFATSVTVGGEDRAYVLYGRVMEGLLGNSGREEFSIEEVRSKKENEEENVWVFVLLGLGLAYFLFWRFQMSKLVRDINKKTN
Disordered Region (DISPRO)
GVVYDKTALNQEKFATSVTVGGEDRAYVLYGRVMEGLLGNSGREEFSIEEVRSKKENEEENVWVFVLLGLGLAYFLFWRFQMSKLVRDIN****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
GVVYDKTALNQEKFATSVTVGGEDRAYVLYGRVMEGLLGNSGREEFSIEEVRSKKENEEENVWVFVLLGLGLAYFLFWRFQMSKLVRDINKKTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
118481079	369	unknown [Populus trichocarpa]	1.0	0.254	0.723	8e-35
224137872	369	predicted protein [Populus trichocarpa]	1.0	0.254	0.723	1e-34
224077888	113	predicted protein [Populus trichocarpa]	1.0	0.831	0.712	1e-31
255586331	363	conserved hypothetical protein [Ricinus	1.0	0.258	0.663	2e-31
356530752	376	PREDICTED: uncharacterized protein LOC10	1.0	0.25	0.659	2e-30
224069098	362	predicted protein [Populus trichocarpa]	1.0	0.259	0.659	6e-30
449532685	363	PREDICTED: uncharacterized protein LOC10	1.0	0.258	0.648	5e-28
449445350	362	PREDICTED: uncharacterized protein LOC10	1.0	0.259	0.648	5e-28
225424200	366	PREDICTED: uncharacterized protein LOC10	1.0	0.256	0.574	8e-28
297737711	365	unnamed protein product [Vitis vinifera]	1.0	0.257	0.574	8e-28

>gi|118481079|gb|ABK92493.1| unknown [Populus trichocarpa]

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 68/94 (72%), Positives = 82/94 (87%)

Query: 1   GVVYDKTALNQEKFATSVTVGGEDRAYVLYGRVMEGLLGNSGREEFSIEEVRSKKENEEE 60
           GVVYDKT L+ E+FATSV VG EDRAYVLYG V+EG+ GN GRE F IEEVRS+KENE+E
Sbjct: 276 GVVYDKTDLDVERFATSVVVGREDRAYVLYGSVLEGITGNGGREWFGIEEVRSEKENEDE 335

Query: 61  NVWVFVLLGLGLAYFLFWRFQMSKLVRDINKKTN 94
            +WV+VL+GLGLAYFL WRFQM +LV++++KKTN
Sbjct: 336 KMWVYVLIGLGLAYFLIWRFQMKQLVKNMDKKTN 369

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137872|ref|XP_002326461.1| predicted protein [Populus trichocarpa] gi|222833783|gb|EEE72260.1| predicted protein [Populus trichocarpa]

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/94 (72%), Positives = 82/94 (87%)

Query: 1   GVVYDKTALNQEKFATSVTVGGEDRAYVLYGRVMEGLLGNSGREEFSIEEVRSKKENEEE 60
           GVVYDKT L+ E+FATSV VG EDRAYVLYG V+EG+ GN GRE F IEEVRS+KENE+E
Sbjct: 276 GVVYDKTDLDVERFATSVVVGREDRAYVLYGSVLEGITGNGGREWFGIEEVRSEKENEDE 335

Query: 61  NVWVFVLLGLGLAYFLFWRFQMSKLVRDINKKTN 94
            +WV+VL+GLGLAYFL WRFQM +LV++++KKTN
Sbjct: 336 KMWVYVLIGLGLAYFLIWRFQMKQLVKNMDKKTN 369

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077888|ref|XP_002335780.1| predicted protein [Populus trichocarpa] gi|222834740|gb|EEE73203.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/94 (71%), Positives = 81/94 (86%)

Query: 1   GVVYDKTALNQEKFATSVTVGGEDRAYVLYGRVMEGLLGNSGREEFSIEEVRSKKENEEE 60
           GVVYDKT L+ E+FATSV VG EDRAYVLYG V+EG+ GN GRE F IEEVRS+KENE+E
Sbjct: 20  GVVYDKTDLDVERFATSVVVGREDRAYVLYGSVLEGITGNGGREWFGIEEVRSEKENEDE 79

Query: 61  NVWVFVLLGLGLAYFLFWRFQMSKLVRDINKKTN 94
            +WV+VL+GLGLAYFL WRFQM +L ++++KKTN
Sbjct: 80  KMWVYVLIGLGLAYFLIWRFQMKQLFKNMDKKTN 113

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586331|ref|XP_002533816.1| conserved hypothetical protein [Ricinus communis] gi|223526253|gb|EEF28569.1| conserved hypothetical protein [Ricinus communis]

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/95 (66%), Positives = 82/95 (86%), Gaps = 1/95 (1%)

Query: 1   GVVYDKTALNQEKFATSVTVGGEDRAYVLYGRVMEGLLGNSG-REEFSIEEVRSKKENEE 59
           GVVYDKT L+ ++F TSV VG EDR YVLYG V+EGL+GN G RE F IEE++S +E+++
Sbjct: 269 GVVYDKTDLDVQRFPTSVAVGREDRVYVLYGSVLEGLMGNGGGREWFDIEEIKSVRESKD 328

Query: 60  ENVWVFVLLGLGLAYFLFWRFQMSKLVRDINKKTN 94
           EN+W+FVLLGLGLAYFLFWRFQM +LV++++KKT+
Sbjct: 329 ENLWIFVLLGLGLAYFLFWRFQMKQLVQNMDKKTS 363

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530752|ref|XP_003533944.1| PREDICTED: uncharacterized protein LOC100793489 [Glycine max]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/94 (65%), Positives = 79/94 (84%)

Query: 1   GVVYDKTALNQEKFATSVTVGGEDRAYVLYGRVMEGLLGNSGREEFSIEEVRSKKENEEE 60
           G V+DK  L++E F TSV VG  DRAYVL+GRVMEG+LGNS RE F IEEV+S KE+E E
Sbjct: 283 GAVFDKIDLDEEGFPTSVVVGERDRAYVLHGRVMEGILGNSERESFMIEEVKSPKESEGE 342

Query: 61  NVWVFVLLGLGLAYFLFWRFQMSKLVRDINKKTN 94
           NVW++V++G+GLAYFLFWRFQM +LV++++KK N
Sbjct: 343 NVWLYVMVGIGLAYFLFWRFQMKQLVKNMDKKIN 376

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069098|ref|XP_002326274.1| predicted protein [Populus trichocarpa] gi|222833467|gb|EEE71944.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 62/94 (65%), Positives = 76/94 (80%)

Query: 1   GVVYDKTALNQEKFATSVTVGGEDRAYVLYGRVMEGLLGNSGREEFSIEEVRSKKENEEE 60
           GVVYDK  L+ E+F TSV VG EDRAYVLYG V+EGL G  GRE F IEEVRS+KE+E+E
Sbjct: 269 GVVYDKIDLDGERFPTSVVVGREDRAYVLYGCVVEGLSGKGGRELFDIEEVRSEKESEDE 328

Query: 61  NVWVFVLLGLGLAYFLFWRFQMSKLVRDINKKTN 94
            +WV+VL+GLGLA F  WRFQM +L+R+++KK N
Sbjct: 329 KIWVYVLIGLGLAIFFIWRFQMKQLIRNMDKKAN 362

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532685|ref|XP_004173311.1| PREDICTED: uncharacterized protein LOC101227627 [Cucumis sativus]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 76/94 (80%)

Query: 1   GVVYDKTALNQEKFATSVTVGGEDRAYVLYGRVMEGLLGNSGREEFSIEEVRSKKENEEE 60
           GVVYD+  L++EKFAT+V VG E R YVL G V EGL GN GRE F IEE+RS KE+E+E
Sbjct: 270 GVVYDEIDLDEEKFATAVAVGNEGRVYVLNGYVNEGLNGNLGREMFGIEEMRSPKESEDE 329

Query: 61  NVWVFVLLGLGLAYFLFWRFQMSKLVRDINKKTN 94
            VW++VL+G GLAYFLFWRFQM +L+ +++KKTN
Sbjct: 330 RVWIYVLVGFGLAYFLFWRFQMKQLIGNMDKKTN 363

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445350|ref|XP_004140436.1| PREDICTED: uncharacterized protein LOC101209037 [Cucumis sativus]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 76/94 (80%)

Query: 1   GVVYDKTALNQEKFATSVTVGGEDRAYVLYGRVMEGLLGNSGREEFSIEEVRSKKENEEE 60
           GVVYD+  L++EKFAT+V VG E R YVL G V EGL GN GRE F IEE+RS KE+E+E
Sbjct: 269 GVVYDEIDLDEEKFATAVAVGNEGRVYVLNGYVNEGLNGNLGREMFGIEEMRSPKESEDE 328

Query: 61  NVWVFVLLGLGLAYFLFWRFQMSKLVRDINKKTN 94
            VW++VL+G GLAYFLFWRFQM +L+ +++KKTN
Sbjct: 329 RVWIYVLVGFGLAYFLFWRFQMKQLIGNMDKKTN 362

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424200|ref|XP_002284260.1| PREDICTED: uncharacterized protein LOC100245798 [Vitis vinifera]

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 54/94 (57%), Positives = 76/94 (80%)

Query: 1   GVVYDKTALNQEKFATSVTVGGEDRAYVLYGRVMEGLLGNSGREEFSIEEVRSKKENEEE 60
           G ++D+TAL  E F TSVT+GG+ R YV+YG + EG+     RE FSIEE+RS++E+ EE
Sbjct: 273 GAIFDETALEPEWFPTSVTMGGDQRVYVIYGHLEEGIFRKGEREAFSIEEIRSERESGEE 332

Query: 61  NVWVFVLLGLGLAYFLFWRFQMSKLVRDINKKTN 94
            +WV+VL+GLGL+YFLFWRFQM +L+++++KKTN
Sbjct: 333 KIWVYVLVGLGLSYFLFWRFQMKQLIKNLDKKTN 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737711|emb|CBI26912.3| unnamed protein product [Vitis vinifera]

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 54/94 (57%), Positives = 76/94 (80%)

Query: 1   GVVYDKTALNQEKFATSVTVGGEDRAYVLYGRVMEGLLGNSGREEFSIEEVRSKKENEEE 60
           G ++D+TAL  E F TSVT+GG+ R YV+YG + EG+     RE FSIEE+RS++E+ EE
Sbjct: 272 GAIFDETALEPEWFPTSVTMGGDQRVYVIYGHLEEGIFRKGEREAFSIEEIRSERESGEE 331

Query: 61  NVWVFVLLGLGLAYFLFWRFQMSKLVRDINKKTN 94
            +WV+VL+GLGL+YFLFWRFQM +L+++++KKTN
Sbjct: 332 KIWVYVLVGLGLSYFLFWRFQMKQLIKNLDKKTN 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
TAIR|locus:2038751	387	AT2G01410 "AT2G01410" [Arabido	0.978	0.237	0.505	3.8e-20

TAIR|locus:2038751 AT2G01410 "AT2G01410" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 3.8e-20, P = 3.8e-20
 Identities = 49/97 (50%), Positives = 63/97 (64%)

Query:     1 GVVYDKTALNQEKFATSVTVGGEDRAYVLYGRVMEGLLGNSGREE-----FSIXXXXXXX 55
             GVVYD+  L+ E F T+VTV G DR YVLYGRVMEG++G+S +EE     F I       
Sbjct:   289 GVVYDEIDLDIEGFPTAVTVAGRDRIYVLYGRVMEGIMGSSYKEEGAREWFGIEEVWSEK 348

Query:    56 XXXXXXXWVFVLLGLGLAYFLFWRFQMSKLVRDINKK 92
                    W++VL+G G AYF FWRFQM KL+ +++KK
Sbjct:   349 EGGEDKIWLYVLIGFGFAYFCFWRFQMKKLITNMDKK 385


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.141   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       94        80   0.00091  102 3  11 22  0.38    29
                                                     29  0.41    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  429 (46 KB)
  Total size of DFA:  83 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.30u 0.14s 6.44t   Elapsed:  00:00:00
  Total cpu time:  6.30u 0.14s 6.44t   Elapsed:  00:00:00
  Start:  Fri May 10 15:35:34 2013   End:  Fri May 10 15:35:34 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	94
TIGR03063	29	srtB_target sortase B cell surface sorting signal.	89.78

>TIGR03063 srtB_target sortase B cell surface sorting signal

Probab=89.78  E-value=0.16  Score=28.98  Aligned_cols=28  Identities=21%  Similarity=0.401  Sum_probs=23.3

Q ss_pred             cccCCCceEEehhHHHHHHHHHHHHHhh
Q 039234           54 KKENEEENVWVFVLLGLGLAYFLFWRFQ   81 (94)
Q Consensus        54 ~kE~e~e~Vw~~vlig~~la~f~fWRFQ   81 (94)
                      ||-|+..|+++|..+-++-++|+.+|++
T Consensus         2 PkT~D~a~i~ly~~l~~~s~~~Li~k~~   29 (29)
T TIGR03063         2 PKTGDSAQIGLYAVLFLGSGLFLIRKRK   29 (29)
T ss_pred             CCCccchhHHHHHHHHHHHHHHHhhccC
Confidence            6778889999998888887788888864

Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	94
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	6e-07

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} Length = 334

 Score = 44.5 bits (104), Expect = 6e-07
 Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 2/57 (3%)

Query: 1   GVVYDKTALNQEKFATSVTVGGEDRAYVLYGRVMEGLLGNSGREEFSIEEVRSKKEN 57
                +   +          G E   Y +      G  G   R ++ + ++ +  +N
Sbjct: 273 KTKRSELQNSGFTAVADYYQGSEQGLYAVSAFFDNGAHGG--RSDYPLYKLDNSIQN 327

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	94
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.49

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.49  E-value=8.3e-05  Score=58.78  Aligned_cols=46  Identities=17%  Similarity=0.330  Sum_probs=39.6

Q ss_pred             cccceeeEEE--ccCCeEEEEeeeehhhhccCCCCcceeEEEEEecccCC
Q 039234           11 QEKFATSVTV--GGEDRAYVLYGRVMEGLLGNSGREEFSIEEVRSKKENE   58 (94)
Q Consensus        11 ~~~f~taV~V--~~~~R~YvL~g~~~eg~~g~~~re~F~IeEv~~~kE~e   58 (94)
                      ..+|+|++++  ..++++||+++.+.+++.|+  |++|.+++|.++.|+-
T Consensus       281 ~~g~tt~t~~~~~~~~~iYvv~~~f~~~~~g~--r~~f~~~di~~~~~~~  328 (334)
T 2p9w_A          281 NSGFTAVADYYQGSEQGLYAVSAFFDNGAHGG--RSDYPLYKLDNSIQNF  328 (334)
T ss_dssp             SSCEEEEEEEEETTEEEEEEEECCGGGTTTSC--CCCEEEEECCGGGGCC
T ss_pred             cCceeEEEEeccccCCeEEEEeeecCCcccCC--cceeechhhhhhhhhh
Confidence            5677777665  66799999999999998877  9999999999999864

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00