Citrus Sinensis ID: 039238

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------
Protein Sequence
MKRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLEYRVNVWSVSADDPSNPRKRINQNHSSSKEAGGRLHDSAKFNDGENSTRIDDRSEKSVGATISREITVEPLEKQGISQDEGFKNGGGIQGKGINEGEGKRKNIGNSTEQIVDDQATVLKPRDDSSEVKGDLQHTITGEWESEKPENSQDEKQEVQTTSKGGMKLEVLDSRTRLKGKHGHVNRTKGRRWRAMAKNRVSENNGASSMSSRRFYRLDQDELRSRSEGQVSTEGLEKREGKETGENPQELSKAMDAKLLKVNPEDAKLMEKRDENADPNQQLQQQNAPDRECLRIKILMIQHLTFQLMQKNGSPMKINNQKKKPTASIKS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHcccccccccccccHHccccHHHHHHHHcccccccccccccccccccccHHHHHHHccccccccccHHccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEccccccHHHccccccccccccccccccEccccccccccccHcHcccccHHHHcccccccccccccccccccEEccccHHHccccccccccccccEEEEcccccccccccHHccEEccccccccHcccccccEEEEcccccEEEEEEcccccccccccccccccccEEEEEEEccEEEccccccccccEEEcccccccccccccEEccccccccccccccccccccccccHHHHHccccHHHHHHHHHcccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccEEccccccccccccc
Coil and Loop (DISEMBL)
MKRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLEYRVNVwsvsaddpsnprkrinqnhssskeaggrlhdsakfndgenstriddrseksvgaTISREItveplekqgisqdegfkngggiqgkginegegkrknignstEQIVDDqatvlkprddssevkgdlqhtitgewesekpensqdekQEVQttskggmklevldsrtrlkgkhghvnrtkgrRWRAMAKNRvsenngassmssrrfyrldqdelrsrsegqvsteglekregketgenpQELSKAMDAKLLKVNPEDAKLMekrdenadpnqqlqqqnapdreCLRIKILMIQHLTFQLMqkngspmkinnqkkkptasiks
Flexible Loop (DISEMBL)
mkrkneemkvklyslrtqkmeLDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQReqidaskensqLIVLKEILKQREAEIKDLRHQLEYRVNVwsvsaddpsnprkrinqnhssskeaggrlhdsakfndgenstriddrseksvgatisreitveplekqgisqdegfkngggiqgkginegegkrknignsteqivddqatvlkprddssevkgdLQHTitgewesekpensqdekqevqttskggmklevldsrtrlkgkhghvnrtkgrrwramaknrvsenngassmssrrfyrldqdelrsrsegqvsteglekregketgenpqelskamdakLLKVNPEDAKLMEKrdenadpnqqlqqqnapdrECLRIKILMIQHLTFQLMqkngspmkinnqkkkptasiks
Low Complexity Region (SEG)
MKRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLEYRVNVWSVSADDPSNPRKRINQNHSSSKEAGGRLHDSAKFNDGENSTRIDDRSEKSVGATISREITVEPLEKQGISQDegfkngggiqgkginegegkRKNIGNSTEQIVDDQATVLKPRDDSSEVKGDLQHTITGEWESEKPENSQDEKQEVQTTSKGGMKLEVLDSRTRLKGKHGHVNRTKGRRWRAMAKNRVSENNGASSMSSRRFYRLDQDELRSRSEGQVSTEGLEKREGKETGENPQELSKAMDAKLLKVNPEDAKLMEKRDENADPNQQLQQQNAPDRECLRIKILMIQHLTFQLMQKNGSPMKINNQKKKPTASIKS
Disordered region (IsUnstruct)
*********************************************************************LIVLKEILKQREAEIKDLRHQLEYRVNVWSV*************************************************************************************************************************************************************************************************************************************************************************************ECLRIKILMIQHLTFQLM**********************
Disordered Region (DISOPRED)
*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
********KVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLEYRVNVWSVSADDPSNPRKRINQNHSSSKEAGGRLHDSAKFNDGENSTRIDDRSEKSVGATISREITVEPLEKQGISQDEGFKNGGGIQGKGINEGEGKRKNIGNSTEQIVDDQATVLK************QHTITGE********************KGGMKLEVLDSRTRLKGKHGHVNRTKGRRWRAMAKN************SRRFYRLDQ******************************LSKAMDAKLLKVNPEDAKLMEKRDENADPNQQLQQQNAPDRECLRIKILMIQHLTFQLMQKNGSPMKI*************
Disordered Region (DISPRO)
*****EEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLEY***************************************************************************************************************Q*T*L********VK*D********************KQEVQTTSKGGMKLEVLDS***************GRRWRAMAKNRVSENN***************************************************AKL*K**P*DAKLMEKRDENADPNQQLQQQNAPDRECLRIKILMIQHLTFQLMQKNGSP****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKRKNEEMKVKLYSLRTQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSQxxxxxxxxxxxxxxxxxxxxxLEYRVNVWSVSADDPSNPRKRINQNHSSSKEAGGRLHDSAKFNDGENSTRIDDRSEKSVGATISREITVEPLEKQGISQDEGFKNGGGIQGKGINEGEGKRKNIGNSTEQIVDDQATVLKPRDDSSEVKGDLQHTITGEWESEKPENSQDEKQEVQTTSKGGMKLEVLDSRTRLKGKHGHVNRTKGRRWRAMAKNRVSENNGASSMSSRRFYRLDQDELRSRSEGQVSTEGLEKREGKETGENPQELSKAMDAKLLKVNPEDAKLMEKRDENADPNQQLQQQNAPDRECLRIKILMIQHLTFQLMQKNGSPMKINNQKKKPTASIKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
224124620	531	predicted protein [Populus trichocarpa]	0.899	0.706	0.392	5e-46
255553881	602	micronuclear linker histone polyprotein,	0.817	0.566	0.375	1e-38
224127110	507	predicted protein [Populus trichocarpa]	0.798	0.656	0.368	3e-37
225447256	517	PREDICTED: uncharacterized protein LOC10	0.671	0.541	0.376	2e-34
297739273	482	unnamed protein product [Vitis vinifera]	0.671	0.580	0.376	2e-34
356544908	515	PREDICTED: uncharacterized protein LOC10	0.729	0.590	0.346	2e-27
356515206	499	PREDICTED: uncharacterized protein LOC10	0.671	0.561	0.315	5e-23
388503622	473	unknown [Medicago truncatula]	0.609	0.536	0.288	1e-16
358345127	473	hypothetical protein MTR_050s0015 [Medic	0.609	0.536	0.288	1e-16
218200563	415	hypothetical protein OsI_28026 [Oryza sa	0.211	0.212	0.366	0.0004

>gi|224124620|ref|XP_002319377.1| predicted protein [Populus trichocarpa] gi|222857753|gb|EEE95300.1| predicted protein [Populus trichocarpa]

 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 178/453 (39%), Positives = 238/453 (52%), Gaps = 78/453 (17%)

Query: 1   MKRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQRE- 59
           MKRK EEMK K+YSLR QKMELDRRLLEMQSTI S+KDEQK +ESALEEKQ+EIKM RE 
Sbjct: 1   MKRKTEEMKAKIYSLRIQKMELDRRLLEMQSTIGSMKDEQKIMESALEEKQSEIKMLRET 60

Query: 60  QIDASKENSQLIVLKEILKQREAEIKDLRHQLEYRVNVWSVSADDPSNPR----KRINQN 115
              A KE  Q+ VL+E LKQ+EAEI+DL+H+LEY   +WSVS DDPS+P       +N  
Sbjct: 61  NKGAEKETLQMEVLRESLKQKEAEIEDLKHRLEYPAKIWSVSTDDPSSPSVNRTATLNMI 120

Query: 116 HSSSKEAGGR-----LHDSAKFNDGENSTRIDDRSEKS-----VGATISREI-------- 157
             +  EAG       L +SA  ++G NST+ +  +  S     VG T + E         
Sbjct: 121 SENKIEAGKSEEEVLLQESANDSNGLNSTKGNGGNTTSINQEQVGDTATVENASESKVAI 180

Query: 158 ---TVEPLEKQGISQDEGFKNGGGI-------------QGKGINEGEGKRKNIGNSTEQI 201
              T EP E+Q +   EG +NG  I             Q KG + G G+  N  N+TE  
Sbjct: 181 PDRTEEPREEQ-LQMLEGSRNGRAIGITNDQVNKSESSQEKGTS-GSGEENNASNATETN 238

Query: 202 VDDQATVLKPRDDSSE--VKGDLQHTIT--GEWESEKPENSQDEKQEVQTTSKGGMKLEV 257
           V     V K  D  +E   K   +H +T  G+ E E       E +  Q T +GG+KL++
Sbjct: 239 VSRIGRVSKITDADNEEKSKDGEEHKVTRDGKLELENVL----EAEGHQETFRGGVKLKM 294

Query: 258 LD-SRTRLKGKHGHVNRTKGRRWRAMAKNRV-----SENNGASSMSSRRFYRLDQDELRS 311
           +D SR   + K+ H +R +G+R     +NR+      ENNGA  M SR+    DQ  L  
Sbjct: 295 MDNSRNTRREKYRHASRVRGKRGEMGTRNRLLEIRNHENNGAEKMRSRKSPTDDQGRLID 354

Query: 312 RSEGQVSTEGLEKREGKETGENPQELSKAMDAKLLKV----NPEDAKLMEKRDENADPNQ 367
           R EG+ S +G             +E+ KA+D+   K     N ED+K ++ +      N 
Sbjct: 355 REEGRASNDG-----------KTEEIRKAVDSSDGKTMEHQNHEDSKDLQNKLGKDGTNH 403

Query: 368 QLQQQNAPDRECLRIKILMIQHLTFQLMQKNGS 400
           Q+    + D E L  + L I H + +L   NGS
Sbjct: 404 QM----SEDHETL--ERLRIAHDSKELT--NGS 428

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553881|ref|XP_002517981.1| micronuclear linker histone polyprotein, putative [Ricinus communis] gi|223542963|gb|EEF44499.1| micronuclear linker histone polyprotein, putative [Ricinus communis]

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 153/407 (37%), Positives = 207/407 (50%), Gaps = 66/407 (16%)

Query: 1   MKRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQ 60
           MKRK EEMK K+YSLR QKME +RR+LE+QSTIDSLKDE K +ESALEEKQNEI +  E 
Sbjct: 73  MKRKTEEMKAKIYSLRNQKMETERRILELQSTIDSLKDEMKIVESALEEKQNEINIHTET 132

Query: 61  IDASKENSQLIVLKEILKQREAEIKDLRHQLEYRVNVWSVSADDPSNPRKRINQNHSSS- 119
               ++ +Q+I L E LKQREAEI+DL+  LE  + + SVS  DPSN +   N   +S+ 
Sbjct: 133 SMYPEKETQMIALMESLKQREAEIEDLKSHLENPLKIPSVSTGDPSNTQLISNVTGNSAD 192

Query: 120 --KEAGGRLHDSAKFN-------------------DGENSTRIDD-RSEKSVGATISREI 157
             K    +LH S  ++                    G+N+ R+D+ RSE  VG T S  +
Sbjct: 193 GDKTEDRQLHKSTNYSKYLNPTRGNESDNASTRVVKGDNTARVDEARSENKVGITDSLVV 252

Query: 158 -----------TVEPLEKQGISQDEGFKNGGGIQGKGINE---GEGKRKNIGNSTEQIVD 203
                      ++E L  +G    E  +NG G + +G      G G+     N TE IV 
Sbjct: 253 NKEGQLEMLENSLERLRNKGAPGKESSENGQGNKDEGSQASALGLGEENKFTNVTEGIVS 312

Query: 204 DQATVLKPRD-DSSEVKGDLQHTI-TGEWESEKPENSQDEKQEVQTTSKGGMKLEVL--- 258
               V +  + D   V G  Q     G+ E    +NSQ EK   + T KG +K E++   
Sbjct: 313 TAEKVSQTGNADMKSVDGKGQKAARDGQLE---LKNSQQEKGR-ERTFKGAVKSEMIGNA 368

Query: 259 -DSRTRLKGKHGHVNRTKGRRWRAMAKNRVSEN-----NGASSMSSRRFYRLDQDELRSR 312
             S +R++ KH      KG+RWR +A+NR  EN     N A  +  R+F   D+D LR R
Sbjct: 369 RSSNSRVREKHA-----KGKRWRILARNRTLENRNYESNEAGGIRKRKFSSNDRDGLRDR 423

Query: 313 SEGQVSTEGLEKREGKE--TGENPQELSKAMDAKLLKV----NPEDA 353
            E   S +G   + G E  TG +    +KA      K+    NPED 
Sbjct: 424 EEATTSDKG---KTGSERVTGADKLPETKAEGFSNAKIPESQNPEDT 467

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127110|ref|XP_002329400.1| predicted protein [Populus trichocarpa] gi|222870450|gb|EEF07581.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 150/407 (36%), Positives = 209/407 (51%), Gaps = 74/407 (18%)

Query: 20  MELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQRE-QIDASKENSQLIVLKEILK 78
           MELDRR LEMQSTIDS+KDEQK +ESALEEKQNEIKM RE  IDA K N Q+  L E LK
Sbjct: 1   MELDRRQLEMQSTIDSIKDEQKIMESALEEKQNEIKMLREMNIDADKGNLQMADLIESLK 60

Query: 79  QREAEIKDLRHQLEYRVNVWSVSADDPSNPRKRINQNHSS------------SKEAGGRL 126
           Q+EAEI++L+H LEY    WSVS DDPS+P   IN   SS            SKE   +L
Sbjct: 61  QKEAEIEELKHHLEYPAKKWSVSTDDPSSP--PINMTVSSNMVNEGNIEVDKSKEEEVQL 118

Query: 127 HDSA-------KFNDGENSTR-----------IDDRSEKSVGATISREITVEPLEKQ--- 165
           H++A          +G NST            +++ SE  VG    RE++ E   ++   
Sbjct: 119 HETAYDGNGLDSRGNGGNSTSTNLEKQGDTAIVENASESRVGIADRREVSEEKESQKLDG 178

Query: 166 -------GISQDEGFKNGGGIQGKGINEGEGKRKNIGNSTEQIVD----DQATVLKPRDD 214
                  GI +D+ ++N    QGK  + G G+  N  N+TE IV        T     D+
Sbjct: 179 SRNGSSIGIDKDQEYENESS-QGKRAS-GAGEENNTSNATETIVSRIGRASKTADAHNDE 236

Query: 215 SSEVKGDLQHTITGEWESEKPENSQDEKQEVQTTSKGGMKLEVLD-SRTRLKGKHGHVNR 273
            S  + + +  + G+   E  + ++D     Q T +GG K E++D SR+R   ++ H +R
Sbjct: 237 KSRDREEHKFNLDGQPGLENVQEAEDR----QETLRGGAKREMVDNSRSRGNERYHHASR 292

Query: 274 TKGRRWRAMAKNRVSE-----NNGASSMSSRRFYRLDQDELRSRSEGQVSTEGLEKREGK 328
            +G+R   +AKNR+ E     NN A    +R+F R DQ  L  R  G+ S +G       
Sbjct: 293 VRGKRRTVVAKNRLLESRNDVNNVAEKTRNRKFPRDDQGRLIYREGGRASIDGT------ 346

Query: 329 ETGENPQELSKAMDAKLLKV----NPEDAKLMEKRDENADPNQQLQQ 371
                 +E++KA+     K     N ED+K +E +      NQQ+ +
Sbjct: 347 -----TEEITKAVGFSKTKSIEHQNHEDSKDLENKLGEDRQNQQMSE 388

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447256|ref|XP_002272957.1| PREDICTED: uncharacterized protein LOC100246486 [Vitis vinifera]

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/329 (37%), Positives = 172/329 (52%), Gaps = 49/329 (14%)

Query: 2   KRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKM-QREQ 60
           +RK EE+K K+  L++Q MEL  R++EMQSTI SL+DE K LE A +EKQ EIKM Q  +
Sbjct: 76  RRKIEELKAKILYLKSQNMELHSRVMEMQSTIASLRDEHKTLEMAFDEKQTEIKMLQERE 135

Query: 61  IDASKENSQLIVLKEILKQREAEIKDLRHQLEYRVNVWSVSADDPSNPRKRINQNHS--- 117
            D+ KEN + I LKEILK+REAEI+DL+H L            DPSNP   +    +   
Sbjct: 136 TDSIKENPEAIALKEILKKREAEIEDLKHHL------------DPSNPPVNLTARENMGW 183

Query: 118 -------SSKEAGGRLHDSAKFNDGENSTRIDDRSEKSVGATISREITVEPLEKQGISQD 170
                    KE    LH++    +G+  T   D SE  VG  + +E+T E   ++  +  
Sbjct: 184 EDKTKAREGKEQNEHLHEADSNGNGQKLTG-GDGSENGVGVNLQKEMTGEAKFQKFENTQ 242

Query: 171 EGFKNGGGIQG-KGINEGEGKRK-------NIG--------NSTEQIVDDQATVLKPRDD 214
           +G    GGI G K IN  +G +        + G        N+TE I   +       DD
Sbjct: 243 DGV--AGGITGEKSINADQGNKNKHSQDELDFGTREEKADPNATEAIFKSEVGKTIDEDD 300

Query: 215 SSEVKGDLQHTITGEWESEKPENSQD-EKQEVQTTSKGGMKLEVLDSR-----TRLKGKH 268
           + +V  + +H I      EK ENS D E Q++   SK G+K+E+  S      + + GKH
Sbjct: 301 NKKVMDNKEHGIVRNGHLEKHENSHDGEGQKLGMISK-GVKMEMPGSSMNGAGSGIGGKH 359

Query: 269 GHVNRTKGRRWRAMAKNRVSENNGASSMS 297
           GH  +TK +RWR + K+R  ENNG S  S
Sbjct: 360 GHAGKTKEKRWRILTKSRGVENNGNSENS 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739273|emb|CBI28924.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/329 (37%), Positives = 172/329 (52%), Gaps = 49/329 (14%)

Query: 2   KRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKM-QREQ 60
           +RK EE+K K+  L++Q MEL  R++EMQSTI SL+DE K LE A +EKQ EIKM Q  +
Sbjct: 41  RRKIEELKAKILYLKSQNMELHSRVMEMQSTIASLRDEHKTLEMAFDEKQTEIKMLQERE 100

Query: 61  IDASKENSQLIVLKEILKQREAEIKDLRHQLEYRVNVWSVSADDPSNPRKRINQNHS--- 117
            D+ KEN + I LKEILK+REAEI+DL+H L            DPSNP   +    +   
Sbjct: 101 TDSIKENPEAIALKEILKKREAEIEDLKHHL------------DPSNPPVNLTARENMGW 148

Query: 118 -------SSKEAGGRLHDSAKFNDGENSTRIDDRSEKSVGATISREITVEPLEKQGISQD 170
                    KE    LH++    +G+  T   D SE  VG  + +E+T E   ++  +  
Sbjct: 149 EDKTKAREGKEQNEHLHEADSNGNGQKLTG-GDGSENGVGVNLQKEMTGEAKFQKFENTQ 207

Query: 171 EGFKNGGGIQG-KGINEGEGKRK-------NIG--------NSTEQIVDDQATVLKPRDD 214
           +G    GGI G K IN  +G +        + G        N+TE I   +       DD
Sbjct: 208 DGV--AGGITGEKSINADQGNKNKHSQDELDFGTREEKADPNATEAIFKSEVGKTIDEDD 265

Query: 215 SSEVKGDLQHTITGEWESEKPENSQD-EKQEVQTTSKGGMKLEVLDSR-----TRLKGKH 268
           + +V  + +H I      EK ENS D E Q++   SK G+K+E+  S      + + GKH
Sbjct: 266 NKKVMDNKEHGIVRNGHLEKHENSHDGEGQKLGMISK-GVKMEMPGSSMNGAGSGIGGKH 324

Query: 269 GHVNRTKGRRWRAMAKNRVSENNGASSMS 297
           GH  +TK +RWR + K+R  ENNG S  S
Sbjct: 325 GHAGKTKEKRWRILTKSRGVENNGNSENS 353

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544908|ref|XP_003540889.1| PREDICTED: uncharacterized protein LOC100791306 [Glycine max]

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 123/355 (34%), Positives = 178/355 (50%), Gaps = 51/355 (14%)

Query: 1   MKRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIK-MQRE 59
           ++ KNEEMK KLYSLR+QKMEL R ++EMQST+DSLKDEQK +ES  EE+QNE++ MQ +
Sbjct: 76  LRGKNEEMKGKLYSLRSQKMELARTVVEMQSTLDSLKDEQKLMESEFEEQQNELRLMQEK 135

Query: 60  QIDASKENSQLIVLKEILKQREAEIKDLRHQLEYRVNVWSVSADDPSNPRKRINQNHSSS 119
                +  S++  L++ LK +EAE++DL+ +LE  VN      D P+   + +  N + +
Sbjct: 136 GKSVGQGRSEIEALRDNLKHKEAEMEDLKRRLEIPVN------DHPTIFPEIVTANGTIA 189

Query: 120 KEAGGRLHDSAKFNDGENSTRIDDRSEKSVGATISREITVEPLEKQGISQDEGFKNGGGI 179
            +            D      I   S K  G T + E T++       S+   FK+G   
Sbjct: 190 AQ------------DENGKDEISGESAKHEGDTDNNEGTIK-------SELTKFKDGE-- 228

Query: 180 QGKGINEGEGKRKNIGNSTEQIVDDQATVLKPRDDSSEVKGDLQHTITGEWESEKPENSQ 239
               I +     + +G + E   DD     K  DD  E  G  +  I            Q
Sbjct: 229 VATEIKDEIRIDRELGKANEDPRDDGGGAAKDLDDVEEADGREKKAI------------Q 276

Query: 240 DEKQEVQTTSKGGMKLEVLDSRTRLKGKHGHVNRTKGRRWRAMAKNRVSENNGASSMSS- 298
           +   +V+  + GG +++ L     +K KHG  +RTKG+RWR   KN + ENNG     S 
Sbjct: 277 EYAGQVENNTDGGDQVKQL---AGMKRKHGRASRTKGKRWRTTVKNSLMENNGVFENHSG 333

Query: 299 -RRFYRLDQDELRSRSEGQVSTEGLEKREGKETGENPQELSKAMDAKLLKVNPED 352
            R+ Y+   DEL+ R  G+VS EG   R+      N     K + AKLLK  PE+
Sbjct: 334 DRKVYK---DELKGRRFGKVSNEGNFARKDVGLNNNSHRKGKPL-AKLLK--PEN 382

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515206|ref|XP_003526292.1| PREDICTED: uncharacterized protein LOC100814540 [Glycine max]

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 172/371 (46%), Gaps = 91/371 (24%)

Query: 1   MKRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIK-MQRE 59
           ++ KNEEMK KLY+LR+QKMEL R + EMQST+DSLKDEQK +ESA EE+QNE++ MQ +
Sbjct: 75  LRSKNEEMKGKLYTLRSQKMELARTVGEMQSTLDSLKDEQKLMESAFEEQQNELRSMQEK 134

Query: 60  QIDASKENSQLIVLKEILKQREAEIKDLRHQLEYRVN----VWS--VSADDPSNPRKRIN 113
               ++    +  L++ LK +E E++DL+ +LE  VN    +++  V+A+     +  I 
Sbjct: 135 GKSVAQGGYDIEALRDNLKHKEEELEDLKRRLETPVNDHPTIFNEIVTANGTIAAQDEIE 194

Query: 114 QNHSSSKEA--------GGRLHDSAKFNDGENSTRIDDRSEKSVGATISREITVEPLEKQ 165
           ++ +S + A        G    +  KF DGE +T + D                      
Sbjct: 195 KDENSGESAKHEGDNNEGASKSELTKFKDGEVATEMRD---------------------- 232

Query: 166 GISQDEGFKNGGGIQGKGINEGEGKRKNIGNSTEQIVDDQATVLKPRDDSSEVKGDLQHT 225
           GI  D                G+G  K++         D A V+  R             
Sbjct: 233 GIRTD----------------GDGATKDM---------DDAEVVDGR------------- 254

Query: 226 ITGEWESEKPENSQDEKQEVQTTSKGGMKLEVLDSRTRLKGKHGHVNRTKGRRWRAMAKN 285
                  EK    ++   +V+  + GG +++ L    R   KH   +R KG+RWR   KN
Sbjct: 255 -------EKKAMREEHAGQVENNTDGGGRVKQLAGTKR---KHSRASRMKGKRWRTTVKN 304

Query: 286 RVSENNGASSMSS--RRFYRLDQDELRSRSEGQVSTEGLEKREGKETGENPQELSKAMDA 343
              ENNG     S  R+ Y+   DEL+ R  G+VS E    RE +    N Q   K   A
Sbjct: 305 SSMENNGVFENHSDNRKVYK---DELKGRRVGKVSNEENFAREDEGRNNNSQRKEKPH-A 360

Query: 344 KLLKVNPEDAK 354
           KLLK    ++K
Sbjct: 361 KLLKTENHESK 371

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503622|gb|AFK39877.1| unknown [Medicago truncatula]

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 152/315 (48%), Gaps = 61/315 (19%)

Query: 1   MKRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIK-MQRE 59
           + RKNEE + K+Y+L  QKMEL R + EMQST+ SLKDEQK +ESA  EKQ E++ MQ+ 
Sbjct: 70  LSRKNEETRAKIYTLSNQKMELTRTIAEMQSTMSSLKDEQKLIESAYAEKQYELRMMQQR 129

Query: 60  QIDASKENSQLIVLKEILKQREAEIKDLRHQLEYRVNVWSVSADDPSNPRKRINQNHSSS 119
             +  +  ++ I  +E LK+ EA+I+DL+   ++      + A + +   +   +N +  
Sbjct: 130 GSNLGQGGTKRISSRENLKKTEADIEDLKSIDDHPAIFDQILAANATKEAQSKTKNDNQE 189

Query: 120 KEAGGRLHDSAKFNDGENSTRIDDRSEKSVGATISREI-TVEPLEKQGISQDEGFKNGGG 178
           K+       ++K+   E+ +++ +  +  V A I  EI T E L K+  +  +      G
Sbjct: 190 KDQ------NSKYGGDESKSKLTEFKDGEVTAEIKEEIKTNEELGKKNDNPAD-----DG 238

Query: 179 IQGKGINEGEGKRKNIGNSTEQIVDDQATVLKPRDDSSEVKGDLQHTITGEWESEKPENS 238
             GK   E E K          +V+D+  +++      EV                  N+
Sbjct: 239 ASGK---EAEAK----------VVEDKKAIIEEHQRKLEV------------------NT 267

Query: 239 QDEKQEVQTTSKGGMKLEVLDSRTRLKGKHGHVNRTKGRRWRAMAKNR------VSENNG 292
              +Q+ +     G K E           HGH++RT+G RWR + KN+      + EN+G
Sbjct: 268 DGGRQDFKAKQLSGAKRE-----------HGHLSRTEGARWRNIVKNKLMESNGIFENHG 316

Query: 293 ASSMSSRRFYRLDQD 307
             +M   + Y+ D+D
Sbjct: 317 EVNMVKTKVYKEDKD 331

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345127|ref|XP_003636634.1| hypothetical protein MTR_050s0015 [Medicago truncatula] gi|355502569|gb|AES83772.1| hypothetical protein MTR_050s0015 [Medicago truncatula]

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 152/315 (48%), Gaps = 61/315 (19%)

Query: 1   MKRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIK-MQRE 59
           + RKNEE + K+Y+L  QKMEL R + EMQST+ SLKDEQK +ESA  EKQ E++ MQ+ 
Sbjct: 70  LSRKNEETRAKIYTLSNQKMELTRTIAEMQSTMSSLKDEQKLIESAYAEKQYELRMMQQR 129

Query: 60  QIDASKENSQLIVLKEILKQREAEIKDLRHQLEYRVNVWSVSADDPSNPRKRINQNHSSS 119
             +  +  ++ I  +E LK+ EA+I+DL+   ++      + A + +   +   +N +  
Sbjct: 130 GSNLGQGGTKRISSRENLKKTEADIEDLKSIDDHPAIFDQILAANATKEAQSKTKNDNQE 189

Query: 120 KEAGGRLHDSAKFNDGENSTRIDDRSEKSVGATISREI-TVEPLEKQGISQDEGFKNGGG 178
           K+       ++K+   E+ +++ +  +  V A I  EI T E L K+  +  +      G
Sbjct: 190 KDQ------NSKYGGDESKSKLTEFKDGEVTAEIKEEIKTNEELGKKNDNPAD-----DG 238

Query: 179 IQGKGINEGEGKRKNIGNSTEQIVDDQATVLKPRDDSSEVKGDLQHTITGEWESEKPENS 238
             GK   E E K          +V+D+  +++      EV                  N+
Sbjct: 239 ASGK---EAEAK----------VVEDKKAIIEEHQRKLEV------------------NT 267

Query: 239 QDEKQEVQTTSKGGMKLEVLDSRTRLKGKHGHVNRTKGRRWRAMAKNR------VSENNG 292
              +Q+ +     G K E           HGH++RT+G RWR + KN+      + EN+G
Sbjct: 268 DGGRQDFKAKQLSGAKRE-----------HGHLSRTEGARWRNIVKNKLMESNGIFENHG 316

Query: 293 ASSMSSRRFYRLDQD 307
             +M   + Y+ D+D
Sbjct: 317 EVNMVKTKVYKEDKD 331

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218200563|gb|EEC82990.1| hypothetical protein OsI_28026 [Oryza sativa Indica Group]

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 13/101 (12%)

Query: 1   MKRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEI-KMQRE 59
           MKRK EE+K    SLRTQK +L  ++  +++T  +LK+ +K LE+AL EK + + +M+  
Sbjct: 65  MKRKLEELKATTSSLRTQKTDLKTKIKGLEATATTLKNREKELEAALAEKNSRVSQMEAT 124

Query: 60  QID-----------ASKEN-SQLIVLKEILKQREAEIKDLR 88
             D           AS  N  Q+  L E+L+Q+EAE+++++
Sbjct: 125 LTDKNSHIRQMEERASGTNPDQMAALMELLQQKEAELEEIK 165

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
SGD|S000001803	1875	MLP1 "Myosin-like protein asso	0.877	0.195	0.189	1.2e-07
DICTYBASE|DDB_G0290503	1492	DDB_G0290503 [Dictyostelium di	0.913	0.255	0.211	7e-07
DICTYBASE|DDB_G0271058	1528	vilC "villin-like protein C" [	0.868	0.236	0.207	8.9e-06
UNIPROTKB|E2R2W8	1835	PDE4DIP "Uncharacterized prote	0.177	0.040	0.328	2.2e-05
UNIPROTKB|E1BRE5	1411	EEA1 "Uncharacterized protein"	0.964	0.284	0.191	2.2e-05
FB|FBgn0265045	9270	Strn-Mlck "Stretchin-Mlck" [Dr	0.812	0.036	0.214	2.4e-05
UNIPROTKB|Q3V6T2	1871	CCDC88A "Girdin" [Homo sapiens	0.944	0.210	0.204	3.1e-05
UNIPROTKB|I3LK17	1741	CCDC88A "Uncharacterized prote	0.956	0.229	0.205	3.6e-05
UNIPROTKB|F1SQK4	1819	CCDC88A "Uncharacterized prote	0.956	0.219	0.205	3.8e-05
WB|WBGene00019064	1974	myo-5 [Caenorhabditis elegans	0.925	0.195	0.202	4.2e-05

SGD|S000001803 MLP1 "Myosin-like protein associated with the nuclear envelope" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 158 (60.7 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 74/390 (18%), Positives = 183/390 (46%)

Query:     1 MKRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQ 60
             ++  N  ++ +L +   +K EL   L +++  +  ++ E  AL+ +++EK+ E+K+ +E+
Sbjct:  1219 LRESNITLRNELENNNNKKKELQSELDKLKQNVAPIESELTALKYSMQEKEQELKLAKEE 1278

Query:    61 IDASKENSQLIVLK-EIL-----KQREAEIKDLRHQLEYRVNVWSVSADDPSNPRKRINQ 114
             +   K+ SQ I+ K E L     ++ E+EI++L+ +LE +    + + +  +  R++  +
Sbjct:  1279 VHRWKKRSQDILEKHEQLSSSDYEKLESEIENLKEELENKERQGAEAEEKFNRLRRQAQE 1338

Query:   115 NHSSSKEAGGRLHDSAK-FNDG----ENS-TRIDDRSEKSVGATISR-EITVEPLEKQGI 167
                +SK +   L +      D     ENS +  + R E+   A +++    +E + K   
Sbjct:  1339 RLKTSKLSQDSLTEQVNSLRDAKNVLENSLSEANARIEELQNAKVAQGNNQLEAIRKL-- 1396

Query:   168 SQDXXXXXXXXXXXXXXXXXXXXRKNIGNSTEQIVDDQATVLKPRDDSSEVKG---DLQH 224
              Q+                       I    E+I   +  + K R    +++    + Q+
Sbjct:  1397 -QEDAEKASRELQAKLEESTTSYESTINGLNEEITTLKEEIEKQRQIQQQLQATSANEQN 1455

Query:   225 TITGEWESEKPENSQDEKQEVQTTSKGGMKLEVLDSRTRLKGKHGHVNRTK-GRRWRAMA 283
              ++   ES K    +D+ + ++  ++  +  ++L+++ RL  +  ++N  +  ++W +  
Sbjct:  1456 DLSNIVESMKKSFEEDKIKFIKEKTQE-VNEKILEAQERLN-QPSNINMEEIKKKWESEH 1513

Query:   284 KNRVSENNGASSMSSRRFYRLDQDELRSRSEGQVSTEGLEKREGKETGENPQELSKAMDA 343
             +  VS+    +  + ++  RL  +E  ++   +   E LEK   ++  E  + + ++ + 
Sbjct:  1514 EQEVSQKIREAEEALKKRIRLPTEEKINKIIERKKEE-LEKEFEEKVEERIKSMEQSGEI 1572

Query:   344 KLLKVNPEDAKLMEKRDE-NADPNQQLQQQ 372
              ++     +AK+ EK+ E   + N++LQ++
Sbjct:  1573 DVVLRKQLEAKVQEKQKELENEYNKKLQEE 1602

GO:0043021 "ribonucleoprotein complex binding" evidence=IGI;IPI

GO:0051028 "mRNA transport" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005816 "spindle pole body" evidence=IDA

GO:0090204 "protein localization to nuclear pore" evidence=IMP

GO:0090203 "transcriptional activation by promoter-terminator looping" evidence=IMP

GO:1901925 "negative regulation of protein import into nucleus during spindle assembly checkpoint" evidence=IGI

GO:0006606 "protein import into nucleus" evidence=IEA;IGI

GO:0005643 "nuclear pore" evidence=IEA

GO:0034398 "telomere tethering at nuclear periphery" evidence=IGI

GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IMP

GO:0030529 "ribonucleoprotein complex" evidence=IPI

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0071048 "nuclear retention of unspliced pre-mRNA at the site of transcription" evidence=IGI;IMP

GO:0016021 "integral to membrane" evidence=ISM

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)]

 Score = 150 (57.9 bits), Expect = 7.0e-07, P = 7.0e-07
 Identities = 86/406 (21%), Positives = 175/406 (43%)

Query:     5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDAS 64
             ++E+K+KL  L  +  E D +L  ++S+I    ++   L+  L EKQ++I    E  ++S
Sbjct:   544 SDELKLKLNQLSDKLQEKDEKLKSLESSIIERDEKIDQLQDNLNEKQDKINELVENNESS 603

Query:    65 KEN--SQLIVLKEILKQREAEIKDLRHQLEYRVNVWSVSADDPSNP-RKRINQNHSSSKE 121
              +   S+LI L + L++++ ++  L +Q    +N    + ++  N   + I  N SSS E
Sbjct:   604 SDELQSKLIQLSDQLQEKDEKL--LNNQSI--INELQSNLNENQNKINELIENNQSSSDE 659

Query:   122 AGGRLHD-SAKFND-GEN----STRIDDRSEKSVGATISREITVEPLEKQGISQDXXXXX 175
                +L   S +  D  EN     T I +  +K      S ++TV  L+ +   ++     
Sbjct:   660 LNSKLIKLSDELKDKNENVRSLETSIIENQDKLDQLIQSNQVTVNELQSKLNEKEININQ 719

Query:   176 XXXXXXXXXXXXXXXRKNIGNSTEQIVDDQATVLKPRDDSSEVKGDLQHTITGEWES--- 232
                                 N   Q++++  +      D  + K + +H    E +S   
Sbjct:   720 LIENNQSSLDELQSKLNEKQNEINQLIENNQS----SSDELQSKLNEKHQEISELQSKLN 775

Query:   233 EKPENSQDEKQEVQTTSKGGMKLEVLDSRTRLKGKHGHVNRTKGRRWRAMAKNRVSENNG 292
             E  EN++    E+Q+     +  E+ +   +LK     +   + +  +    N+ S +  
Sbjct:   776 ELIENNESSSDELQSKLIQ-LSDELKEKDEKLKSLDSIIIENQEKLVQLTKSNQDSLDEL 834

Query:   293 ASSMSSRRFYRLDQDELRSRSEGQVSTEGLEKR-EGKETGENPQELSKAMDAKLLKVNPE 351
              S ++ ++    +  E    S  ++ ++  EK+ E     EN Q  S  + +KL + + E
Sbjct:   835 QSKLNEKQNEINELIENNQSSSNELQSKLNEKQNEINLLIENNQSSSDELQSKLNEKHQE 894

Query:   352 DAKLMEKRDENADPNQQLQQQNAPDRECLRIKILMIQHLTFQLMQK 397
               +L  K +E  +   +L + N    + L+ K++    L+ QL +K
Sbjct:   895 INELQSKLNEKQNKINELVENNESSSDELQSKLIQ---LSDQLQEK 937

GO:0005543 "phospholipid binding" evidence=IEA

DICTYBASE|DDB_G0271058 vilC "villin-like protein C" [Dictyostelium discoideum (taxid:44689)]

 Score = 140 (54.3 bits), Expect = 8.9e-06, P = 8.9e-06
 Identities = 79/380 (20%), Positives = 158/380 (41%)

Query:     2 KRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEI--KMQRE 59
             +RK  E + K   L  QK+  +R   + +  +   ++EQ+ L+  L++K +E   K+++E
Sbjct:   142 RRKELEEEAKKLELEQQKIREEREKRKEERRLQQ-EEEQRKLQDLLDKKDSEKIEKLKQE 200

Query:    60 QIDASKENSQLIVLKEILKQREAEIKDLRHQLEYRVNVWSVSADDPSNPRKRINQNHSSS 119
             + +  ++  +  + KE+  ++E E K+L  +LE       + AD     +K   +   + 
Sbjct:   201 ENEKLEKEEKERIEKELTDKKEKEEKELADKLEKERQEKEL-ADKLEKEKKEKEEKELAD 259

Query:   120 KEAGGRLHDSAKFNDGENSTRIDDRSEKSVGATISREITVEPLEKQGISQDXXXXXXXXX 179
             K    RL D  K  D E    + D+ EK    +  +E+  E LEK+    D         
Sbjct:   260 KLEKERL-DKEK-KDKEEK-ELADKLEKE---SQEKELA-EKLEKEKELADKLEKEQKEK 312

Query:   180 XXXXXXXXXXXRKNIGNSTEQIVDDQATVLKPRDDSSEVKGDLQHTITGEWESEKPENSQ 239
                         K      E+   + A  L+      E+   L+     +  ++K E  +
Sbjct:   313 EEKERQEKELADKLAKEQKEKEEKELADKLEKERQEKELADKLEKEKQEKELADKLEKEK 372

Query:   240 DEKQEVQTTSKGGMKLEVLDSRTR-LKGKHGHVNRTKGRRWRAMAKNRVSENNGASSMSS 298
              EK+ ++   K   + E+ D   +  K K     + +  +     K R  +   A++ ++
Sbjct:   373 QEKESLEKLEKEKQEKELADKLAKEQKEKEEKEEKEEKEKQEKEEKERKDKELAAAAAAA 432

Query:   299 RRFYRLDQDELRSRSEGQVSTEGLEKREGKETGENPQELSKAMDAKLLKVNPEDAKLMEK 358
                 +L+++ L    +     E  EK E KE  E  +EL+  ++ +  K   E A  +EK
Sbjct:   433 ET-EKLEKERLEKEKKELEEKELAEKLE-KEKLE--KELTDKLEKE--KKEKELADKLEK 486

Query:   359 RDENADPNQQLQQQNAPDRE 378
               ++ +   +L+++     E
Sbjct:   487 EKQDKELADKLEKEQKEKEE 506

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|E2R2W8 PDE4DIP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 97 (39.2 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
 Identities = 25/76 (32%), Positives = 39/76 (51%)

Query:    17 TQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEI 76
             TQ+   D  L E+Q  I  ++   K L+  L E   E+K  +E   + K++  +  LKE 
Sbjct:   232 TQQSVSDSHLAELQEKIQQMEATNKILQEKLNEMSCELKSAQES--SQKQDGTIQSLKET 289

Query:    77 LKQREAEIKDLRHQLE 92
             LK RE E ++L   +E
Sbjct:   290 LKSRENETEELYQVIE 305

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0030016 "myofibril" evidence=ISS

GO:0005813 "centrosome" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0019899 "enzyme binding" evidence=ISS

GO:0043623 "cellular protein complex assembly" evidence=ISS

UNIPROTKB|E1BRE5 EEA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 136 (52.9 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 83/433 (19%), Positives = 189/433 (43%)

Query:     2 KRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61
             K   E+   +L   R Q  ELD R+ E+   +++ ++   + +S L++K   ++  ++QI
Sbjct:   743 KASKEQALQELQQQRQQSTELDLRIAELSKQLEAEREAMSSAKSDLQKKSEALEQAKQQI 802

Query:    62 DASKENSQLIVLKEILKQREAEIKDLRHQLEYRVNVWSVSADDPSNPRKRINQNHSSSKE 121
               SK+  +   LK+ L++   +       L+ ++   +         +  + ++ +S+KE
Sbjct:   803 --SKQEEENASLKKNLEKSSQDTSKQLKDLDCKMQAATSELQQVKLEKDTLLKDLTSTKE 860

Query:   122 AGGRLHDSAKFNDGENSTRIDDRSEKSVGATISREITVEPLEKQGISQDXXXXXXXXXXX 181
                +  +S K    +    ++   EK   A    E + + +++Q   Q            
Sbjct:   861 KLSKSSESFK----KRKEELEKEIEKGKAAVAEMEKSYQEVKQQLQVQTESVAKERNELK 916

Query:   182 XXXXXXXXXRKNIG---NSTE-QIVDDQATVLKPRDDSSE-VKGDLQHTITGEWESEKPE 236
                       K +    +ST  Q+++ Q  +LK +++S + ++G L+  +   +E +K +
Sbjct:   917 NSLEKKEGISKQLSIELDSTRAQVLEIQG-LLKEKENSEQHLQGKLRE-MKESFEQKK-K 973

Query:   237 NSQDEKQEVQTTSKGGMKLE-VLDSRTRL--------KGKHGHVNRTKGRRWRAMAKNRV 287
             +S+  + E++T      +LE  L  +T L        KGK   + +T  +    M K ++
Sbjct:   974 HSETLQTELKTALLEKAELENKLQQQTILSAQELKAEKGKLADLQKTHEKNKENMEKLQL 1033

Query:   288 SENNGASSM-SSRRFYRLDQDELRSRSEGQVSTEGLEKREGKETGENPQELSKAMDAKLL 346
                   S + ++R+  +  +++L    E  VS+    +     + +  QEL KA      
Sbjct:  1034 DLYGKESELLATRQDLKSTEEKLALAQEELVSS----RNRIASSNQQIQELKKAKSTLEQ 1089

Query:   347 KVNPEDAKLMEKRDENAD-PNQQ-LQQQNAPDRECLRIKILMIQHLTFQLMQKNGSPMKI 404
               + ++ +L EK     D  N++ L++++  + +C   ++  I+    +   K    ++I
Sbjct:  1090 DASKKEQQLGEKAKMLQDLQNERILKEKDLANEKCKTTELQEIRSRLEKESAKLSEELRI 1149

Query:   405 NNQK-KKPTASIK 416
               Q+ +K  A++K
Sbjct:  1150 CKQEFEKEVANLK 1162

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005545 "1-phosphatidylinositol binding" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005969 "serine-pyruvate aminotransferase complex" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0030742 "GTP-dependent protein binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

FB|FBgn0265045 Strn-Mlck "Stretchin-Mlck" [Drosophila melanogaster (taxid:7227)]

 Score = 127 (49.8 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
 Identities = 82/383 (21%), Positives = 159/383 (41%)

Query:    41 KALES-ALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLEYRVNVWS 99
             K LE  ++EE++ E K +++   A  E SQ   + EI+ ++   I D + Q   +  V  
Sbjct:  4397 KVLEKKSIEEEKLEDKKEKQTESAIDEKSQKAEVSEIVSEK---ITDEKAQESQKEEV-- 4451

Query:   100 VSADDPSNPRKRINQNHSSSKEAGGRLHDSAKFNDGENSTRIDDRSEKS-VGATISREIT 158
                D  + P+K       S +EA  +L D     + +  + ID++S+K+ V   +S +IT
Sbjct:  4452 --KDSEAKPKKAKVLEKKSIEEA--KLEDK---KETQTDSAIDEKSQKAEVSEIVSEKIT 4504

Query:   159 VEPLEKQGISQDXXXXXXXXXXXXXXXXXXXXRKNIGNSTEQIVDDQATVLKPRDDSSEV 218
              E       +Q+                    +K+I  +  ++ D + T      D    
Sbjct:  4505 DEK------AQESQKEEVKDSEAKPKKAKVLEKKSIEEA--KLEDKKETQTDSAIDEKSQ 4556

Query:   219 KGDLQHTITGEWESEKPENSQDEKQEVQTTSKGGMKLEVLDSRT----RLKGKHGHVNRT 274
             K ++   ++ +   EK + SQ  K+EV+ +     K +VL+ ++    +L+ K     +T
Sbjct:  4557 KAEVSEIVSEKITDEKAQESQ--KEEVKDSEAKPKKAKVLEKKSIEEEKLEDKKE--KQT 4612

Query:   275 KGRRWRAMAKNRVSENNGASSMSSRRFYRLDQDELRSRSEGQVSTEGLEKR---EGKETG 331
             +        K  VSE   +  ++  +      +E++         + LEK+   E K   
Sbjct:  4613 ESAIDEKSQKAEVSEIV-SEKITDEKAQESQMEEVKDSEAKPKKAKVLEKKSIEEAKLED 4671

Query:   332 ENPQELSKAMDAKLLKVNPEDAKLMEKRDENADPNQQLQQQNAPDRECLRIKILMIQHLT 391
             +   +   A+D K  K    +    +  DE A   Q+ Q++   D E    K  +++   
Sbjct:  4672 KKETQTDSAIDEKSQKAEVSEIVSEKITDEKA---QESQKEEVKDSEAKPKKAKVLE--- 4725

Query:   392 FQLMQKNGSPMKINNQKKKPTAS 414
                 +K+    K+ ++K+K T S
Sbjct:  4726 ----KKSIEEEKLEDKKEKQTES 4744

GO:0006468 "protein phosphorylation" evidence=IEA;ISS;NAS

GO:0004687 "myosin light chain kinase activity" evidence=ISS;IDA

GO:0004683 "calmodulin-dependent protein kinase activity" evidence=IDA

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|Q3V6T2 CCDC88A "Girdin" [Homo sapiens (taxid:9606)]

 Score = 136 (52.9 bits), Expect = 3.1e-05, P = 3.1e-05
 Identities = 89/436 (20%), Positives = 178/436 (40%)

Query:     7 EMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESA---LEEKQNEIKMQREQIDA 63
             + K K+  LR +  E   +LL+ +  ++ ++ E K L+     L       +M R+++DA
Sbjct:   255 DAKAKIRRLRQELEEKTEQLLDCKQELEQMEIELKRLQQENMNLLSDARSARMYRDELDA 314

Query:    64 SKEN--------SQLIVLKEILKQRE---AEIKDLRHQLEYRVNVWSVSADDPSNPRKRI 112
              +E         S++   KE L   E   A +++L+   +  +   ++  D     R R 
Sbjct:   315 LREKAVRVDKLESEVSRYKERLHDIEFYKARVEELKEDNQVLLETKTMLEDQLEGTRARS 374

Query:   113 NQNHSSSKEAGGRLHDSAKFNDGENSTRIDDRSEKSVGATISREITVEPLEKQGISQDXX 172
             ++ H   KE    L   AK +D E    +D    K +   +   +T+E  +KQ + +   
Sbjct:   375 DKLHELEKE---NLQLKAKLHDMEMERDMD---RKKIEELMEENMTLEMAQKQSMDESLH 428

Query:   173 XXXXXXXXXXXXXXXXXXRKNIGNSTEQIVDDQATVLKPRDDS-SEVKGDLQHTITGEWE 231
                               +K++G+   ++   +   L+  + S ++   +L+ T+    E
Sbjct:   429 LGWELEQISRTSELSEAPQKSLGHEVNELTSSRLLKLEMENQSLTKTVEELRTTVDSV-E 487

Query:   232 SEKPENSQDEKQEVQTTSKGGMKLEVLDSRT--RLKGKHGHVNRTKG-RRWRAMAKNRVS 288
                 +  + EK+  Q  SK   K+E+L++      +      N +K   + +A  +  + 
Sbjct:   488 GNASKILKMEKEN-QRLSK---KVEILENEIVQEKQSLQNCQNLSKDLMKEKAQLEKTIE 543

Query:   289 ---ENNGAS-SMSSRRFYRLDQDELRSRSEGQVSTEGLEKREGKETGENPQELSKAMDAK 344
                EN+     +  +    L+Q     R   Q+S E   K   KE  +   E  K   +K
Sbjct:   544 TLRENSERQIKILEQENEHLNQTVSSLRQRSQISAEARVKDIEKEN-KILHESIKETSSK 602

Query:   345 LLKVNPEDAKL---MEKRDENADPNQQLQQQN---APDRECLRIKI--LMIQHLTFQLMQ 396
             L K+  E  ++   +E   E  +  ++L+ +      + E L+ KI  L I     + ++
Sbjct:   603 LSKIEFEKRQIKKELEHYKEKGERAEELENELHHLEKENELLQKKITNLKITCEKIEALE 662

Query:   397 KNGSPMKINNQKKKPT 412
             +  S ++  N+K K T
Sbjct:   663 QENSELERENRKLKKT 678

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0016477 "cell migration" evidence=IMP

GO:0035091 "phosphatidylinositol binding" evidence=IDA

GO:0042127 "regulation of cell proliferation" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0016044 "cellular membrane organization" evidence=IDA

GO:0043422 "protein kinase B binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0003779 "actin binding" evidence=IDA

GO:0030027 "lamellipodium" evidence=IDA

GO:0030032 "lamellipodium assembly" evidence=IMP

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IMP

GO:0001932 "regulation of protein phosphorylation" evidence=ISS

GO:0006275 "regulation of DNA replication" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0032148 "activation of protein kinase B activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0031929 "TOR signaling cascade" evidence=ISS

GO:0010975 "regulation of neuron projection development" evidence=ISS

UNIPROTKB|I3LK17 CCDC88A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 135 (52.6 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 91/442 (20%), Positives = 181/442 (40%)

Query:     7 EMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESA---LEEKQNEIKMQREQIDA 63
             + K K+  LR +  E   +LL+ +  ++ ++ E K L+     L       +M R+++DA
Sbjct:   200 DAKAKIRRLRQELEEKTEQLLDCKQELEQMEIELKRLQQENMNLLSDARSARMYRDELDA 259

Query:    64 SKEN--------SQLIVLKEILKQRE---AEIKDLRHQLEYRVNVWSVSADDPSNPRKRI 112
              +E         S++   KE L   E   A +++L+   +  +   ++  D     R R 
Sbjct:   260 LREKAIRVDKLESEVSRYKERLHDIEFYKARVEELKEDNQVLLETKTMLEDQLEGTRARS 319

Query:   113 NQNHSSSKEAGGRLHDSAKFNDGENSTRIDDRSEKSVGATISREITVEPLEKQGISQDXX 172
             ++ H   KE    L   AK +D E    +D    K +   +   +T+E  +KQ + +   
Sbjct:   320 DKLHELEKE---NLQLKAKLHDMEMERDMD---RKKIEELMEENMTLEMAQKQSMDESLH 373

Query:   173 XXXXXXXXXXXXXXXXXXRKNIGNSTEQIVDDQATVLKPRDDS-SEVKGDLQHTITGEWE 231
                               +K++G+   ++   +   L+  + S ++   +L+ T+    E
Sbjct:   374 LGWELEQISRTSELSEAPQKSLGHEVNELTSSRLLKLEMENQSLTKTVEELRSTMDSA-E 432

Query:   232 SEKPENSQDEKQEVQTTSKGGMKLEVLDSRT--RLKGKHGHVNRTKG-RRWRAMAKNRVS 288
                 +  + EK+  Q  SK   K+E+L++      +      N +K   + +A  +  + 
Sbjct:   433 GNTSKILKIEKEN-QRLSK---KVEILENEIIQEKQSLQNCQNLSKDLMKEKAQLEKTIE 488

Query:   289 ---ENNGAS-SMSSRRFYRLDQDELRSRSEGQVSTEGLEKREGKETGENPQELSKAMDAK 344
                EN+     +  +    L+Q     R   Q+S E   K   KE  +   E  K   +K
Sbjct:   489 TLRENSERQIKILEQENEHLNQTVSSLRQRSQISAEARVKDIEKEN-KILHESIKETSSK 547

Query:   345 LLKVNPEDAKL---MEKRDENADPNQQLQQQN---APDRECLRIKI--LMIQHLTFQLMQ 396
             L K+  E  ++   +E   E  +  ++L+ +      + E L+ KI  L I     + ++
Sbjct:   548 LSKIEFEKRQIRKELEHYKEKGERAEELENELHHLEKENELLQKKITNLKITCEKVEALE 607

Query:   397 KNGSPMKINNQK-KKPTASIKS 417
             +  S ++  N+K KK   S K+
Sbjct:   608 QENSELERENRKFKKTLDSFKN 629

GO:0008017 "microtubule binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

UNIPROTKB|F1SQK4 CCDC88A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 135 (52.6 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 91/442 (20%), Positives = 181/442 (40%)

Query:     7 EMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESA---LEEKQNEIKMQREQIDA 63
             + K K+  LR +  E   +LL+ +  ++ ++ E K L+     L       +M R+++DA
Sbjct:   200 DAKAKIRRLRQELEEKTEQLLDCKQELEQMEIELKRLQQENMNLLSDARSARMYRDELDA 259

Query:    64 SKEN--------SQLIVLKEILKQRE---AEIKDLRHQLEYRVNVWSVSADDPSNPRKRI 112
              +E         S++   KE L   E   A +++L+   +  +   ++  D     R R 
Sbjct:   260 LREKAIRVDKLESEVSRYKERLHDIEFYKARVEELKEDNQVLLETKTMLEDQLEGTRARS 319

Query:   113 NQNHSSSKEAGGRLHDSAKFNDGENSTRIDDRSEKSVGATISREITVEPLEKQGISQDXX 172
             ++ H   KE    L   AK +D E    +D    K +   +   +T+E  +KQ + +   
Sbjct:   320 DKLHELEKE---NLQLKAKLHDMEMERDMD---RKKIEELMEENMTLEMAQKQSMDESLH 373

Query:   173 XXXXXXXXXXXXXXXXXXRKNIGNSTEQIVDDQATVLKPRDDS-SEVKGDLQHTITGEWE 231
                               +K++G+   ++   +   L+  + S ++   +L+ T+    E
Sbjct:   374 LGWELEQISRTSELSEAPQKSLGHEVNELTSSRLLKLEMENQSLTKTVEELRSTMDSA-E 432

Query:   232 SEKPENSQDEKQEVQTTSKGGMKLEVLDSRT--RLKGKHGHVNRTKG-RRWRAMAKNRVS 288
                 +  + EK+  Q  SK   K+E+L++      +      N +K   + +A  +  + 
Sbjct:   433 GNTSKILKIEKEN-QRLSK---KVEILENEIIQEKQSLQNCQNLSKDLMKEKAQLEKTIE 488

Query:   289 ---ENNGAS-SMSSRRFYRLDQDELRSRSEGQVSTEGLEKREGKETGENPQELSKAMDAK 344
                EN+     +  +    L+Q     R   Q+S E   K   KE  +   E  K   +K
Sbjct:   489 TLRENSERQIKILEQENEHLNQTVSSLRQRSQISAEARVKDIEKEN-KILHESIKETSSK 547

Query:   345 LLKVNPEDAKL---MEKRDENADPNQQLQQQN---APDRECLRIKI--LMIQHLTFQLMQ 396
             L K+  E  ++   +E   E  +  ++L+ +      + E L+ KI  L I     + ++
Sbjct:   548 LSKIEFEKRQIRKELEHYKEKGERAEELENELHHLEKENELLQKKITNLKITCEKVEALE 607

Query:   397 KNGSPMKINNQK-KKPTASIKS 417
             +  S ++  N+K KK   S K+
Sbjct:   608 QENSELERENRKFKKTLDSFKN 629

GO:0043422 "protein kinase B binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0032148 "activation of protein kinase B activity" evidence=IEA

GO:0031929 "TOR signaling cascade" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0030032 "lamellipodium assembly" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0016044 "cellular membrane organization" evidence=IEA

GO:0010975 "regulation of neuron projection development" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0006275 "regulation of DNA replication" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

WB|WBGene00019064 myo-5 [Caenorhabditis elegans (taxid:6239)]

 Score = 135 (52.6 bits), Expect = 4.2e-05, P = 4.2e-05
 Identities = 86/425 (20%), Positives = 172/425 (40%)

Query:     6 EEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASK 65
             EE KV    L   K +L+  L E++ T++  K  ++  E    + + E+K+ +E I+   
Sbjct:  1023 EEDKVN--HLNKTKAKLESTLDELEDTLEREKRGRQDCEKQRRKVEGELKIAQELIEELN 1080

Query:    66 ENSQLIVLKEILKQREAEIKDLRHQLEYRVNVWSVSADDPSNPRKRINQNHSSSKEAGGR 125
              +      ++++K+++ E+  ++ +LE   +  S+ A      ++ + +     +E    
Sbjct:  1081 RHKH--EQEQVIKKKDIELSSIQSRLE---DEQSLVAKLQRQIKELLARIQELEEELDAE 1135

Query:   126 LHDSAKFNDGENSTRID-----DRSEKSVGATISREITVEPLEKQGISQDXXXXXXXXXX 180
              +  +K     N  +++     DR +++ GAT   +  +E  +K+               
Sbjct:  1136 RNSRSKAEKARNEMQMELEELGDRLDEAGGAT---QAQIELNKKREAELAKLRQDLEDAA 1192

Query:   181 XXXXXXXXXXRKNIGNSTEQIVDDQATVLKPRDDSSEVKGDLQHTI-----TGEWESEKP 235
                       RK   ++  ++ D   T+ K R      K D Q  +     + + E+++ 
Sbjct:  1193 INSETSMAALRKKHNDAVAELSDQLDTIQKMRGKLEREKNDKQREVDELQQSADVEAKQR 1252

Query:   236 EN-----SQDEKQEVQTTSKGGMKLEVLDSRTRLKGKHGHVNRTKGRRW-----RAMAKN 285
             +N      Q E Q    T K   +  ++   T  K K  + N+   R+      +  A N
Sbjct:  1253 QNCERMAKQLEAQLTDMTLKSDEQARLIQELTMGKNKVHNENQDLNRQLEDAEAQLCALN 1312

Query:   286 RVSENNGASSMSSRRFYRLDQDELRSRS-EGQVSTEGLEKREGKETGENPQELSKAMDAK 344
             R+ +   +     +R   LDQ+    +S   QVS   LE  + +E+ E  Q+    +  +
Sbjct:  1313 RIKQQQHSQLEELKR--TLDQETRERQSLHSQVSNYQLECEQFRESLEEEQDAKTDVQRQ 1370

Query:   345 LLKVNPEDAKLMEKRD-ENADPNQQLQQQNAPDRECLRIKILMIQHLTFQLMQKNGSPMK 403
             L K N E  +   K + E     ++L++     R  L  K+  +Q       QK G+  K
Sbjct:  1371 LSKANSEIQQWRAKFEGEGVSRAEELEET----RRKLTHKVQEMQEQLENANQKIGTLEK 1426

Query:   404 INNQK 408
              N Q+
Sbjct:  1427 -NKQR 1430

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	417
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 5/96 (5%)

Query: 2   KRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61
           KR+  E+K +L  L+ +   L   L ++ + I  ++ +   LE   E+K  EIK Q  ++
Sbjct: 398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457

Query: 62  -----DASKENSQLIVLKEILKQREAEIKDLRHQLE 92
                D SK   +L  LKE   + E E+  L+ +L 
Sbjct: 458 EQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA 493

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 19/92 (20%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 2   KRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61
           + +  E +      R +    ++R+ +++ T++ L++E   L+  LEE + EI+    ++
Sbjct: 400 EERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESEL 459

Query: 62  DASKENSQLIVLKEI-LKQREAEIKDLRHQLE 92
           +  +   +  V K+  ++ R+  I+ L  +LE
Sbjct: 460 ERFRREVRDKVRKDREIRARDRRIERLEKELE 491

Length = 652

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 22/96 (22%), Positives = 48/96 (50%), Gaps = 5/96 (5%)

Query: 2   KRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI 61
           +   E ++ +L  L  +  E+   L E++  I+SL++  + L   LE+ + E+K    ++
Sbjct: 375 EELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAEL 434

Query: 62  DASKE-----NSQLIVLKEILKQREAEIKDLRHQLE 92
           +  +      N +L  L+E L++    +K+L  +L 
Sbjct: 435 EELQTELEELNEELEELEEQLEELRDRLKELERELA 470

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	417
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	95.22
PRK11637	428	AmiB activator; Provisional	90.6
PRK11637	428	AmiB activator; Provisional	89.02
PF00038	312	Filament: Intermediate filament protein; InterPro:	88.57
PF12761	195	End3: Actin cytoskeleton-regulatory complex protei	87.96
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	87.67
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	86.05
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	85.85
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	85.59
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	84.63
COG4026	290	Uncharacterized protein containing TOPRIM domain,	84.5
PRK09039	343	hypothetical protein; Validated	84.44
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	84.15
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	83.55
PF00038	312	Filament: Intermediate filament protein; InterPro:	82.77
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	81.73
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	81.41
PRK10884	206	SH3 domain-containing protein; Provisional	81.15
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	81.1
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	80.92
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	80.39
COG2433	652	Uncharacterized conserved protein [Function unknow	80.34
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	80.32

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=95.22  E-value=0.087  Score=56.87  Aligned_cols=93  Identities=16%  Similarity=0.328  Sum_probs=67.3

Q ss_pred             cchhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------
Q 039238            2 KRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID-------------------   62 (417)
Q Consensus         2 kRK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~-------------------   62 (417)
                      |.+..+|+..+..||.+-.....++..|++-+..|....|+-+...+..-+.|.-||++..                   
T Consensus       544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsa  623 (697)
T PF09726_consen  544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSA  623 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3455678888888888888888888888888877776534444444445556666776665                   


Q ss_pred             hccchhHHHHHHHHHHHhHHHHHHHHHhhhcc
Q 039238           63 ASKENSQLIVLKEILKQREAEIKDLRHQLEYR   94 (417)
Q Consensus        63 a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle~P   94 (417)
                      .+---.|++.+--.|.++|.||+|||.++..=
T Consensus       624 Lg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~  655 (697)
T PF09726_consen  624 LGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL  655 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22226789999999999999999999998543

; GO: 0016021 integral to membrane

>PRK11637 AmiB activator; Provisional

Probab=90.60  E-value=2  Score=42.76  Aligned_cols=83  Identities=19%  Similarity=0.231  Sum_probs=61.7

Q ss_pred             hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHH
Q 039238            4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAE   83 (417)
Q Consensus         4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAE   83 (417)
                      -++++++..-.|..++.+|...+.+++.....+..++..|+....+++..+..+..... . -..++..|....++.++.
T Consensus       171 ~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~-~-~~~~l~~l~~~~~~L~~~  248 (428)
T PRK11637        171 TIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQ-K-DQQQLSELRANESRLRDS  248 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHH
Confidence            46677777888888999999999999999999999999999999998888888876542 1 112344555555555555


Q ss_pred             HHHHH
Q 039238           84 IKDLR   88 (417)
Q Consensus        84 iEdlK   88 (417)
                      |+.|+
T Consensus       249 I~~l~  253 (428)
T PRK11637        249 IARAE  253 (428)
T ss_pred             HHHHH
Confidence            55554

>PRK11637 AmiB activator; Provisional

Probab=89.02  E-value=3  Score=41.65  Aligned_cols=86  Identities=15%  Similarity=0.195  Sum_probs=41.7

Q ss_pred             hhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHH
Q 039238            8 MKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDL   87 (417)
Q Consensus         8 mkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdl   87 (417)
                      ++.++..|+.|..++...|..+++-+..+..+...++..+...+..|+..+....  .-..++..|..-|.+.+++|+..
T Consensus        45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~--~~~~ei~~l~~eI~~~q~~l~~~  122 (428)
T PRK11637         45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLN--QLNKQIDELNASIAKLEQQQAAQ  122 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444444444443331  11235566666666666666666


Q ss_pred             HHhhhccc
Q 039238           88 RHQLEYRV   95 (417)
Q Consensus        88 K~rle~P~   95 (417)
                      +..|...+
T Consensus       123 ~~~l~~rl  130 (428)
T PRK11637        123 ERLLAAQL  130 (428)
T ss_pred             HHHHHHHH
Confidence            55554433

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=88.57  E-value=3.2  Score=38.97  Aligned_cols=20  Identities=20%  Similarity=0.411  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 039238           42 ALESALEEKQNEIKMQREQI   61 (417)
Q Consensus        42 ~lEsAl~EKq~eI~~m~E~~   61 (417)
                      .+.+.+..++.+|..|+...
T Consensus       259 ~~~~~i~~le~el~~l~~~~  278 (312)
T PF00038_consen  259 EYQAEIAELEEELAELREEM  278 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccchhHHHHHHHH
Confidence            33444444444444444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3

Probab=87.96  E-value=2.9  Score=39.77  Aligned_cols=75  Identities=20%  Similarity=0.307  Sum_probs=57.4

Q ss_pred             hhhhhhhhHHHHHHhhhhhhhHhh--------HHHHHHHHHHHHHHHHHHHHHHHHhhhccc-------------hhHHH
Q 039238           13 YSLRTQKMELDRRLLEMQSTIDSL--------KDEQKALESALEEKQNEIKMQREQIDASKE-------------NSQLI   71 (417)
Q Consensus        13 ~sLr~QKmEL~rkl~emqSTi~sL--------KdeQK~lEsAl~EKq~eI~~m~E~~~a~k~-------------~~Qm~   71 (417)
                      -.|+.|-.+|+.+|...+.....-        .=-.+++|.-|.=|+.+++.+.+ +.+..+             ..|+.
T Consensus        99 vrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~-~~~~~~~~l~~v~~Dl~~ie~QV~  177 (195)
T PF12761_consen   99 VRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE-GRSKSGKNLKSVREDLDTIEEQVD  177 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc-cCCCCCCCHHHHHHHHHHHHHHHH
Confidence            458888888888888888776651        22367899999999999999987 432221             56888


Q ss_pred             HHHHHHHHhHHHHHHHH
Q 039238           72 VLKEILKQREAEIKDLR   88 (417)
Q Consensus        72 aL~E~LkqKEAEiEdlK   88 (417)
                      .|...|..|+.||+.|+
T Consensus       178 ~Le~~L~~k~~eL~~L~  194 (195)
T PF12761_consen  178 GLESHLSSKKQELQQLR  194 (195)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            88999999999998885

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=87.67  E-value=9  Score=33.10  Aligned_cols=17  Identities=35%  Similarity=0.657  Sum_probs=12.1

Q ss_pred             HHHHHhHHHHHHHHHhh
Q 039238           75 EILKQREAEIKDLRHQL   91 (417)
Q Consensus        75 E~LkqKEAEiEdlK~rl   91 (417)
                      --++++|-||+-||.+|
T Consensus       133 ~e~rkke~E~~kLk~rL  149 (151)
T PF11559_consen  133 HELRKKEREIEKLKERL  149 (151)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            34566777888888776

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=86.05  E-value=7.8  Score=34.14  Aligned_cols=56  Identities=25%  Similarity=0.452  Sum_probs=28.2

Q ss_pred             hhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHH--HHHHHHHHHHHHHHHHHHHHh
Q 039238            6 EEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQ--KALESALEEKQNEIKMQREQI   61 (417)
Q Consensus         6 EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQ--K~lEsAl~EKq~eI~~m~E~~   61 (417)
                      .+|.+.|..|+.|-.+|+..+..+++.+.+|..+-  .+|...+++.+.+|..|+++.
T Consensus        75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL  132 (169)
T PF07106_consen   75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKL  132 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666666666666666655555544332  233344444444444444443

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.85  E-value=8.9  Score=36.82  Aligned_cols=58  Identities=21%  Similarity=0.287  Sum_probs=49.1

Q ss_pred             hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238            4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI   61 (417)
Q Consensus         4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~   61 (417)
                      ++-+++.|+..|--=+-+|...+..++.+-..|.+-.++++.-+.|+-.+...++...
T Consensus         2 ~i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~   59 (230)
T PF10146_consen    2 KIKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQIN   59 (230)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777877777778888888888888889999999999999999999998887766

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=85.59  E-value=5  Score=43.15  Aligned_cols=84  Identities=21%  Similarity=0.329  Sum_probs=37.8

Q ss_pred             hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHHHhHHH
Q 039238            5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID-ASKENSQLIVLKEILKQREAE   83 (417)
Q Consensus         5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~-a~k~~~Qm~aL~E~LkqKEAE   83 (417)
                      ++.|++.+...+..-..|.....++......|+.+...|...+++...+|.++.+... ..+.......+++-|+...++
T Consensus       173 v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~e  252 (546)
T PF07888_consen  173 VERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAE  252 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444555555555555555554443 111123333444444444455


Q ss_pred             HHHHH
Q 039238           84 IKDLR   88 (417)
Q Consensus        84 iEdlK   88 (417)
                      +|-++
T Consensus       253 lEq~~  257 (546)
T PF07888_consen  253 LEQLE  257 (546)
T ss_pred             HHHHH
Confidence            55443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=84.63  E-value=9.6  Score=33.82  Aligned_cols=91  Identities=19%  Similarity=0.330  Sum_probs=68.6

Q ss_pred             cchhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHHHh
Q 039238            2 KRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID-ASKENSQLIVLKEILKQR   80 (417)
Q Consensus         2 kRK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~-a~k~~~Qm~aL~E~LkqK   80 (417)
                      |.-.+..-++...|..+.-+|..+....+..|.||...-..||.-|+.-+..+...+.... +.+-.....+|-.=++..
T Consensus         6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~L   85 (143)
T PF12718_consen    6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLL   85 (143)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHH
Confidence            3344555566667777777888888888888899988888999999888888888887765 333344566777888888


Q ss_pred             HHHHHHHHHhhh
Q 039238           81 EAEIKDLRHQLE   92 (417)
Q Consensus        81 EAEiEdlK~rle   92 (417)
                      |.+|+..-.+|.
T Consensus        86 Eeele~ae~~L~   97 (143)
T PF12718_consen   86 EEELEEAEKKLK   97 (143)
T ss_pred             HHHHHHHHHHHH
Confidence            888888877773

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=84.50  E-value=6.5  Score=39.15  Aligned_cols=65  Identities=31%  Similarity=0.391  Sum_probs=42.2

Q ss_pred             hhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHHHHHhhh
Q 039238           19 KMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKDLRHQLE   92 (417)
Q Consensus        19 KmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEdlK~rle   92 (417)
                      .-|++-++.++|.--..|-++--+||+.++|-|.+|+.++-         ....|-|-|+...-|..+||.||+
T Consensus       137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~---------E~s~LeE~~~~l~~ev~~L~~r~~  201 (290)
T COG4026         137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEV---------ENSRLEEMLKKLPGEVYDLKKRWD  201 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhchhHHHHHHHHHH
Confidence            33444455555555555555555666666666666555542         234678899999999999999984

>PRK09039 hypothetical protein; Validated

Probab=84.44  E-value=5.2  Score=39.74  Aligned_cols=88  Identities=15%  Similarity=0.253  Sum_probs=50.5

Q ss_pred             hhhhhhhhhhhhh-------hhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHH--------------HHHHHHHHhh
Q 039238            4 KNEEMKVKLYSLR-------TQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQN--------------EIKMQREQID   62 (417)
Q Consensus         4 K~EEmkAK~~sLr-------~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~--------------eI~~m~E~~~   62 (417)
                      +++++.+.|..|.       ....+|..+|.+++.++..+......||++++++..              ++..++...+
T Consensus        54 eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~s  133 (343)
T PRK09039         54 ALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSA  133 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555554       445566667777777777777777777776654422              2222222221


Q ss_pred             -----hccchhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238           63 -----ASKENSQLIVLKEILKQREAEIKDLRHQL   91 (417)
Q Consensus        63 -----a~k~~~Qm~aL~E~LkqKEAEiEdlK~rl   91 (417)
                           ...=..|+++|+.-|...+++|.+++.+.
T Consensus       134 e~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~  167 (343)
T PRK09039        134 RALAQVELLNQQIAALRRQLAALEAALDASEKRD  167 (343)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 11115577777777777777776665554

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=84.15  E-value=10  Score=35.26  Aligned_cols=89  Identities=26%  Similarity=0.384  Sum_probs=70.6

Q ss_pred             chhhhhhhhhhhhhhhhhH---HHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hccc------------
Q 039238            3 RKNEEMKVKLYSLRTQKME---LDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID-ASKE------------   66 (417)
Q Consensus         3 RK~EEmkAK~~sLr~QKmE---L~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~-a~k~------------   66 (417)
                      ..+++|+..+......|+.   ++.++..++..+..|+-+...|+..|...+.+-..+..+-. +..+            
T Consensus        69 ~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lL  148 (201)
T PF13851_consen   69 EEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLL  148 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777777777777765   56688999999999999999999999999998888877665 2222            


Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHhh
Q 039238           67 NSQLIVLKEILKQREAEIKDLRHQL   91 (417)
Q Consensus        67 ~~Qm~aL~E~LkqKEAEiEdlK~rl   91 (417)
                      --.+.+|.+.|.+++|+|.++-...
T Consensus       149 EkKl~~l~~~lE~keaqL~evl~~~  173 (201)
T PF13851_consen  149 EKKLQALSEQLEKKEAQLNEVLAAA  173 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            2368899999999999999887664

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=83.55  E-value=2.1  Score=45.86  Aligned_cols=82  Identities=28%  Similarity=0.429  Sum_probs=59.1

Q ss_pred             hhhhhhhhhhhhhHHHHHHhhhhhhhHhhH----HHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHH
Q 039238            8 MKVKLYSLRTQKMELDRRLLEMQSTIDSLK----DEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAE   83 (417)
Q Consensus         8 mkAK~~sLr~QKmEL~rkl~emqSTi~sLK----deQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAE   83 (417)
                      |+-.|..||.+--||..+-..+..+|.-|+    ++++..|++|.+|+.+|..|++.-+..  -.++.+|.++=+..-+|
T Consensus       301 ~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l--~~Elq~LlD~ki~Ld~E  378 (546)
T KOG0977|consen  301 IRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQL--SVELQKLLDTKISLDAE  378 (546)
T ss_pred             HHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH--HHHHHHhhchHhHHHhH
Confidence            444555555555555555555555555544    568899999999999999999988422  23788888888888999


Q ss_pred             HHHHHHhh
Q 039238           84 IKDLRHQL   91 (417)
Q Consensus        84 iEdlK~rl   91 (417)
                      |.--..-|
T Consensus       379 I~~YRkLL  386 (546)
T KOG0977|consen  379 IAAYRKLL  386 (546)
T ss_pred             HHHHHHHh
Confidence            98776666

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=82.77  E-value=16  Score=34.36  Aligned_cols=47  Identities=28%  Similarity=0.461  Sum_probs=32.4

Q ss_pred             hhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 039238           12 LYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQR   58 (417)
Q Consensus        12 ~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~   58 (417)
                      +..++.+-+++++.|-.+++.+++|+..-..||..+.+.+.++....
T Consensus       211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~  257 (312)
T PF00038_consen  211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEER  257 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHH
Confidence            34566666777777777777777777777777777777666655433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=81.73  E-value=2.8  Score=37.91  Aligned_cols=53  Identities=28%  Similarity=0.345  Sum_probs=4.3

Q ss_pred             hhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039238            7 EMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQRE   59 (417)
Q Consensus         7 EmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E   59 (417)
                      .+..+++.|+.+-.++.+.-.+++.-+..|.++-..+++.+.+++..|..++.
T Consensus        71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~  123 (194)
T PF08614_consen   71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEA  123 (194)
T ss_dssp             -------------------------------------------HHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHH
Confidence            34444455554444444444444444444444444444444444444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=81.41  E-value=17  Score=32.88  Aligned_cols=57  Identities=23%  Similarity=0.372  Sum_probs=46.4

Q ss_pred             hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238            5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI   61 (417)
Q Consensus         5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~   61 (417)
                      .|--++-+.+|..+...+...+..++.-+++|..+.+.|...|.++|.+|..+.-..
T Consensus        47 aEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~  103 (140)
T PF10473_consen   47 AENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLN  103 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455577778888888888888888888888888888888888888888888887665

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK10884 SH3 domain-containing protein; Provisional

Probab=81.15  E-value=6.1  Score=37.22  Aligned_cols=17  Identities=6%  Similarity=0.204  Sum_probs=7.5

Q ss_pred             HHHHHHHhHHHHHHHHH
Q 039238           73 LKEILKQREAEIKDLRH   89 (417)
Q Consensus        73 L~E~LkqKEAEiEdlK~   89 (417)
                      ++.-+...+|++.+++.
T Consensus       151 ~~~~~~~l~~~~~~~~~  167 (206)
T PRK10884        151 AQKKVDAANLQLDDKQR  167 (206)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333334455555553

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=81.10  E-value=4.1  Score=35.91  Aligned_cols=77  Identities=25%  Similarity=0.397  Sum_probs=40.1

Q ss_pred             hhhhhhhhhhhhHH--HHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhHHHHHH
Q 039238            9 KVKLYSLRTQKMEL--DRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVLKEILKQREAEIKD   86 (417)
Q Consensus         9 kAK~~sLr~QKmEL--~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEiEd   86 (417)
                      |.+||.......+.  .-.+.+|...|..|+++-..|++.+.....+++.+....+       ...|...+.+.++|++.
T Consensus        55 KqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-------~~el~~~i~~l~~e~~~  127 (169)
T PF07106_consen   55 KQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPT-------NEELREEIEELEEEIEE  127 (169)
T ss_pred             ceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHH
Confidence            34555554444331  3345556655666666666666655555555555543332       23344445555556666


Q ss_pred             HHHhhh
Q 039238           87 LRHQLE   92 (417)
Q Consensus        87 lK~rle   92 (417)
                      |..+|+
T Consensus       128 l~~kL~  133 (169)
T PF07106_consen  128 LEEKLE  133 (169)
T ss_pred             HHHHHH
Confidence            666654

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=80.92  E-value=9.5  Score=40.93  Aligned_cols=7  Identities=0%  Similarity=0.221  Sum_probs=3.4

Q ss_pred             hhHhhhH
Q 039238          384 ILMIQHL  390 (417)
Q Consensus       384 ~~~~~~~  390 (417)
                      +++|-|-
T Consensus      1130 ~i~~t~~ 1136 (1164)
T TIGR02169      1130 FIVVSLR 1136 (1164)
T ss_pred             EEEEECc
Confidence            4455554

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=80.39  E-value=11  Score=42.47  Aligned_cols=57  Identities=25%  Similarity=0.401  Sum_probs=39.8

Q ss_pred             hhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039238            5 NEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQI   61 (417)
Q Consensus         5 ~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~   61 (417)
                      .+.++..+..|..+..++.+.+-.++.++++|..+...+...+++...+|..+.+..
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~  434 (1163)
T COG1196         378 FEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAEL  434 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666777777777777777777777777777777777666666666665555544

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=80.34  E-value=7.2  Score=42.78  Aligned_cols=30  Identities=13%  Similarity=0.270  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHhhhccccccc
Q 039238           70 LIVLKEILKQREAEIKDLRHQLEYRVNVWS   99 (417)
Q Consensus        70 m~aL~E~LkqKEAEiEdlK~rle~P~~~~s   99 (417)
                      +..|.--|+.+.-++|.|+.+|..--++|-
T Consensus       483 I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~  512 (652)
T COG2433         483 IERLEKELEEKKKRVEELERKLAELRKMRK  512 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456777788888888888888876655544

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=80.32  E-value=17  Score=39.33  Aligned_cols=86  Identities=28%  Similarity=0.399  Sum_probs=62.6

Q ss_pred             hhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--------hccchhHHHHHHHHHH
Q 039238            7 EMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID--------ASKENSQLIVLKEILK   78 (417)
Q Consensus         7 EmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~--------a~k~~~Qm~aL~E~Lk   78 (417)
                      +-...+..|..|-.+|.+.+.+++.-+..|+..-+.|+..+++.+.+...+++...        +....-.++-|..++.
T Consensus       325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~  404 (594)
T PF05667_consen  325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVE  404 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            44566777888888888888888888888888888888877777777766665544        2223456788888888


Q ss_pred             HhHHHHHHHHHhhh
Q 039238           79 QREAEIKDLRHQLE   92 (417)
Q Consensus        79 qKEAEiEdlK~rle   92 (417)
                      ..++-+..|....+
T Consensus       405 ~s~~rl~~L~~qWe  418 (594)
T PF05667_consen  405 ASEQRLVELAQQWE  418 (594)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888887777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	417
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-04

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 3    RKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQID 62
            R  E  K     L  + M+L R++ E      SL ++   LE     +  +++   E++ 
Sbjct: 914  RSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERL- 972

Query: 63   ASKENSQLIVLKEILKQREAEIKDLRHQLE 92
                  +       +   + EI  LR +L 
Sbjct: 973  -RMSEEEAKNATNRVLSLQEEIAKLRKELH 1001

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 1    MKRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQ 60
            +    EE+      LR +  +       ++   D  K E + L S L+E+   +K ++E+
Sbjct: 986  VLSLQEEIA----KLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEE 1041

Query: 61   IDASKENSQLIVLKEILKQREAEIKDLRHQLE 92
            ++    +    + + + K+   E K L   L 
Sbjct: 1042 LNRRIHDQAKEITETMEKKLVEETKQLELDLN 1073

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 14  SLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKENSQLIVL 73
           S+R  + E  +RL E+ +   S   EQ+  E A ++ +   + Q EQ++ +K N++ I  
Sbjct: 86  SIRKWREEQRKRLQELDA--ASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR-IAD 142

Query: 74  KEILKQREAEI 84
           K   +Q +A+I
Sbjct: 143 KAFYQQPDADI 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	417
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	92.15
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	91.7
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	89.35
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	86.71
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	86.28
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	85.78
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	83.89
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	83.41
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	80.54

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=92.15  E-value=1.3  Score=40.16  Aligned_cols=64  Identities=16%  Similarity=0.178  Sum_probs=48.6

Q ss_pred             hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 039238            4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQIDASKEN   67 (417)
Q Consensus         4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~~~a~k~~   67 (417)
                      ...++-+.+..|..+...|.+++...+..+..|+.+.+.+|..+++....|...+++....+.+
T Consensus        26 ~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~   89 (256)
T 3na7_A           26 LIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSE   89 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence            3445667777777777888888888888888888888888888888888888777776644443

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=91.70  E-value=1.7  Score=35.54  Aligned_cols=20  Identities=10%  Similarity=-0.059  Sum_probs=7.2

Q ss_pred             hhhhhhhhhhhhHHHHHHhh
Q 039238            9 KVKLYSLRTQKMELDRRLLE   28 (417)
Q Consensus         9 kAK~~sLr~QKmEL~rkl~e   28 (417)
                      +..+..|..+..+|...|..
T Consensus        12 ~~~~~~~~~~~~~l~~~l~~   31 (284)
T 1c1g_A           12 KLDKENALDRADEAEADKKA   31 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=89.35  E-value=2.7  Score=34.31  Aligned_cols=41  Identities=27%  Similarity=0.251  Sum_probs=15.7

Q ss_pred             hhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHH
Q 039238            9 KVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEE   49 (417)
Q Consensus         9 kAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~E   49 (417)
                      |.|+.+|..+.-.+...+.+++.-+..|...-..++..+.+
T Consensus         5 ~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~   45 (284)
T 1c1g_A            5 KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVS   45 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=86.71  E-value=6  Score=34.35  Aligned_cols=86  Identities=17%  Similarity=0.253  Sum_probs=56.6

Q ss_pred             hhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHH-HHHHHHhhhccchhHHHHHHHHHHHhHHHH
Q 039238            6 EEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEI-KMQREQIDASKENSQLIVLKEILKQREAEI   84 (417)
Q Consensus         6 EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI-~~m~E~~~a~k~~~Qm~aL~E~LkqKEAEi   84 (417)
                      +|..-.+.-|.-|-+.-..-|.+-+.-.++-..+-..|-+.|++..... .+++|-      -.++..|..-|+..+||+
T Consensus        21 ~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeL------qgEI~~Lnq~Lq~a~ae~   94 (121)
T 3mq7_A           21 MEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEEL------EGEITTLNHKLQDASAEV   94 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence            4555566666666666666666666555666666666667776655553 222222      247888999999999999


Q ss_pred             HHHHHhhh-ccccc
Q 039238           85 KDLRHQLE-YRVNV   97 (417)
Q Consensus        85 EdlK~rle-~P~~~   97 (417)
                      |.|+...+ -|+.|
T Consensus        95 erlr~~~~~~~~r~  108 (121)
T 3mq7_A           95 ERLRRENQVLSVRI  108 (121)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHhhchhhhhHh
Confidence            99998876 33443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=86.28  E-value=6.2  Score=35.61  Aligned_cols=58  Identities=17%  Similarity=0.324  Sum_probs=37.1

Q ss_pred             hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHH-------HHHHHHHHHHHHHHHHHHHHHh
Q 039238            4 KNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDE-------QKALESALEEKQNEIKMQREQI   61 (417)
Q Consensus         4 K~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKde-------QK~lEsAl~EKq~eI~~m~E~~   61 (417)
                      ++-||..++..|.++|+.|..-++.||+.++.=+..       ..+|+.-+.-.+.+|..+++..
T Consensus        49 ~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~  113 (168)
T 3o0z_A           49 LNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNL  113 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788888888888888888888888877765533       3444444444444444444433

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=85.78  E-value=6.6  Score=30.99  Aligned_cols=43  Identities=28%  Similarity=0.445  Sum_probs=21.2

Q ss_pred             CcchhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHH
Q 039238            1 MKRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKAL   43 (417)
Q Consensus         1 mkRK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~l   43 (417)
                      |+.++++++..+..++.+..+|...+..+++.+..|+..-..+
T Consensus         1 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l   43 (112)
T 1l8d_A            1 MKKLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL   43 (112)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4555555555555555555555554444444444444444443

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=83.89  E-value=7.7  Score=32.15  Aligned_cols=42  Identities=17%  Similarity=0.366  Sum_probs=34.5

Q ss_pred             hhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Q 039238           14 SLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIK   55 (417)
Q Consensus        14 sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~   55 (417)
                      ..+++-+||.++|-.++.-+++|+..-.-||.+|.+-+.+-.
T Consensus        33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~   74 (129)
T 3tnu_B           33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE   74 (129)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            356677888999999999999999999999999988766543

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=83.41  E-value=7.3  Score=32.44  Aligned_cols=44  Identities=25%  Similarity=0.319  Sum_probs=31.7

Q ss_pred             hhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHH
Q 039238           13 YSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKM   56 (417)
Q Consensus        13 ~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~   56 (417)
                      ...+++-+||.++|-.++.-+++|+..-.-||.++.+-+.+...
T Consensus        34 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~   77 (131)
T 3tnu_A           34 QSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCM   77 (131)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            34567788899999999999999999988999998887765443

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=80.54  E-value=10  Score=31.60  Aligned_cols=56  Identities=14%  Similarity=0.234  Sum_probs=28.7

Q ss_pred             cchhhhhhhhhhhhhhhhhHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039238            2 KRKNEEMKVKLYSLRTQKMELDRRLLEMQSTIDSLKDEQKALESALEEKQNEIKMQREQ   60 (417)
Q Consensus         2 kRK~EEmkAK~~sLr~QKmEL~rkl~emqSTi~sLKdeQK~lEsAl~EKq~eI~~m~E~   60 (417)
                      +|.+..|.+.|.+|+.++.-|.+.|.+++..-..   +-+.+...+...+.+|.+++..
T Consensus        44 rr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~---~l~~~q~~i~~lE~eL~~~r~e   99 (131)
T 3tnu_A           44 RRTMQNLEIELQSQLSMKASLENSLEETKGRYCM---QLAQIQEMIGSVEEQLAQLRCE   99 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566666666666666666666666553321   2223333444444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00