Citrus Sinensis ID: 039355

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MDFCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDPYKALLNPPKTAIFPTEYKPSDVNDNALEHPFGQPAISPLHPDWNYYSKIIRRNSKTYYK
Secondary Structure (PSIPRED)
ccccccccEEEEEccccHHcHHHHHHHHHHHHcccEEEEEcccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccEEcEEEEEEEcccHHHcHHHHHHHHHHccccccHHHHHHHHHHHccccccccEEEEccccHHHHccccccEEccccccccccccccccccccccccccccccHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MDFCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAWHSIlsvpvgqysssntllidtdpykallnppktaifpteykpsdvndnalehpfgqpaisplhpdwnyyskiirrnsktyyk
Flexible Loop (DISEMBL)
MDFCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDPYKALLNPPKTAIFPTEYKPSDVNDNALEHPFGQpaisplhpdwnyyskiirrnsktyyk
Low Complexity Region (SEG)
MDFCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDPYKALLNPPKTAIFPTEYKPSDVNDNALEHPFGQPAISPLHPDWNYYSKIIRRNSKTYYK
Disordered region (IsUnstruct)
**FCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDPYKALLNPPKTAIFPTEY*************FGQPAISPLHPDWNYYSKIIR********
Disordered Region (DISOPRED)
MDFCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDPYKALLNPPKTAIFPTEYKPSDVNDNA***PFGQPAISPLHPDWNYYSKIIRR*******
Disordered Region (DISEMBL)
MDFCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDPYKALLNPPKTAIFPTEYKPSDVNDNALEHPFGQPAISPLHPDWNYYSKIIRRNSKTYYK
Disordered Region (DISPRO)
MDFCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDPYKALLNPPKTAIFPTEYKPSDVNDNALEHPFGQPAISPLHPDWNYYSKIIRRNSKTYY*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDFCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDPYKALLNPPKTAIFPTEYKPSDVNDNALEHPFGQPAISPLHPDWNYYSKIIRRNSKTYYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
224110096	270	predicted protein [Populus trichocarpa]	0.950	0.429	0.485	1e-33
118487344	270	unknown [Populus trichocarpa]	0.950	0.429	0.485	1e-33
449451096	185	PREDICTED: uncharacterized protein LOC10	0.926	0.610	0.455	9e-30
225441010	274	PREDICTED: uncharacterized protein LOC10	0.942	0.419	0.433	9e-29
297740053	291	unnamed protein product [Vitis vinifera]	0.942	0.395	0.433	1e-28
224148214	264	predicted protein [Populus trichocarpa]	0.909	0.420	0.437	2e-28
118481927	261	unknown [Populus trichocarpa]	0.909	0.425	0.437	2e-28
449526475	129	PREDICTED: uncharacterized LOC101207591	0.663	0.627	0.495	6e-20
388518769	262	unknown [Medicago truncatula]	0.942	0.438	0.371	7e-20
225451723	439	PREDICTED: uncharacterized protein LOC10	0.934	0.259	0.341	2e-18

>gi|224110096|ref|XP_002315414.1| predicted protein [Populus trichocarpa] gi|222864454|gb|EEF01585.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/167 (48%), Positives = 93/167 (55%), Gaps = 51/167 (30%)

Query: 3   FCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAWH--------------------- 41
           FC ERFEVGIWSSAREWYMN+AL+ +M G R KLLFAW                      
Sbjct: 99  FCFERFEVGIWSSAREWYMNDALDGVMRGFRSKLLFAWDQDRCTDSGFKTLENKKKPIFL 158

Query: 42  ------SILSVPVGQYSSSNTLLIDTDPYKALLNPPKTAIFPTEYKPSDVNDNAL----- 90
                 S LS   GQ +S NTLLID DPYK+LLNP  TAIFP EY      D+AL     
Sbjct: 159 KQFKQLSALSWCKGQDTSLNTLLIDNDPYKSLLNPSHTAIFPDEYTVDCATDSALGNEGD 218

Query: 91  -------------------EHPFGQPAISPLHPDWNYYSKIIRRNSK 118
                              +HPFG PAI+PLHPDW++YSKI+RR+SK
Sbjct: 219 LRVFLEGLADAKDVPSYVKDHPFGNPAITPLHPDWDFYSKIVRRHSK 265

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487344|gb|ABK95500.1| unknown [Populus trichocarpa]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/167 (48%), Positives = 93/167 (55%), Gaps = 51/167 (30%)

Query: 3   FCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAWH--------------------- 41
           FC ERFEVGIWSSAREWYMN+AL+ +M G R KLLFAW                      
Sbjct: 99  FCFERFEVGIWSSAREWYMNDALDGVMRGFRSKLLFAWDQDRCTDSGFKTLENKKKPIFL 158

Query: 42  ------SILSVPVGQYSSSNTLLIDTDPYKALLNPPKTAIFPTEYKPSDVNDNAL----- 90
                 S LS   GQ +S NTLLID DPYK+LLNP  TAIFP EY      D+AL     
Sbjct: 159 KQFKQLSALSWCKGQDTSLNTLLIDNDPYKSLLNPSHTAIFPDEYTVDCATDSALGPEGD 218

Query: 91  -------------------EHPFGQPAISPLHPDWNYYSKIIRRNSK 118
                              +HPFG PAI+PLHPDW++YSKI+RR+SK
Sbjct: 219 LRVFLEGLADAKDVPSYVKDHPFGNPAITPLHPDWDFYSKIVRRHSK 265

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451096|ref|XP_004143298.1| PREDICTED: uncharacterized protein LOC101207591 [Cucumis sativus]

 Score =  134 bits (336), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 77/169 (45%), Positives = 91/169 (53%), Gaps = 56/169 (33%)

Query: 1   MDFCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAWHSI------------LSVPV 48
           M FCLERFEVGIWSSA+EWY+++AL+ IM GLR +LLFAW                S P+
Sbjct: 13  MKFCLERFEVGIWSSAKEWYLDSALDSIMHGLRSRLLFAWDQGECTKTCFFDLENKSKPI 72

Query: 49  --------------------GQYSSSNTLLIDTDPYKALLNPPKTAIFPTEYKPSDVNDN 88
                                Q+ SSNTLLID +PYK LLNPP TAIFP EYK  D ND+
Sbjct: 73  FLKELKKVWEGNGVGILRSSTQFCSSNTLLIDNEPYKVLLNPPNTAIFPNEYKADDTNDD 132

Query: 89  AL------------------------EHPFGQPAISPLHPDWNYYSKII 113
           AL                         +PFG P ISP HP+W++YSKII
Sbjct: 133 ALGAGSELRRFLEKVADAKDVSNFIKHNPFGNPPISPHHPNWDFYSKII 181

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441010|ref|XP_002277490.1| PREDICTED: uncharacterized protein LOC100264874 [Vitis vinifera]

 Score =  130 bits (327), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 72/166 (43%), Positives = 85/166 (51%), Gaps = 51/166 (30%)

Query: 1   MDFCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAWHSILSVPVG----------- 49
           M FCLERFEVGIWSS+ E  +N AL+C + GLRGKLLFAW  +     G           
Sbjct: 95  MKFCLERFEVGIWSSSIERNLNAALDCAIGGLRGKLLFAWDQVYCTDTGFKSLEKKTKPL 154

Query: 50  ----------------QYSSSNTLLIDTDPYKALLNPPKTAIFPTEYKPSDVNDNAL--- 90
                           ++SSSNTLLID  PYKA+LNP  T IFP  Y   +VND  L   
Sbjct: 155 FLKELRKIWESSDLGKRFSSSNTLLIDDSPYKAILNPANTGIFPASYNADNVNDTELGPR 214

Query: 91  ---------------------EHPFGQPAISPLHPDWNYYSKIIRR 115
                                EHPFGQPAISP H  W++YS +I+R
Sbjct: 215 GALRLYLDGLVDAVDVASYVKEHPFGQPAISPTHSHWDFYSVVIQR 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740053|emb|CBI30235.3| unnamed protein product [Vitis vinifera]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/166 (43%), Positives = 85/166 (51%), Gaps = 51/166 (30%)

Query: 1   MDFCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAWHSILSVPVG----------- 49
           M FCLERFEVGIWSS+ E  +N AL+C + GLRGKLLFAW  +     G           
Sbjct: 112 MKFCLERFEVGIWSSSIERNLNAALDCAIGGLRGKLLFAWDQVYCTDTGFKSLEKKTKPL 171

Query: 50  ----------------QYSSSNTLLIDTDPYKALLNPPKTAIFPTEYKPSDVNDNAL--- 90
                           ++SSSNTLLID  PYKA+LNP  T IFP  Y   +VND  L   
Sbjct: 172 FLKELRKIWESSDLGKRFSSSNTLLIDDSPYKAILNPANTGIFPASYNADNVNDTELGPR 231

Query: 91  ---------------------EHPFGQPAISPLHPDWNYYSKIIRR 115
                                EHPFGQPAISP H  W++YS +I+R
Sbjct: 232 GALRLYLDGLVDAVDVASYVKEHPFGQPAISPTHSHWDFYSVVIQR 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224148214|ref|XP_002336614.1| predicted protein [Populus trichocarpa] gi|222836336|gb|EEE74743.1| predicted protein [Populus trichocarpa]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 87/167 (52%), Gaps = 56/167 (33%)

Query: 3   FCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAWH--------------------- 41
           FCLERF+VGIWSSAR   +  AL+C++  L+G+LLF W                      
Sbjct: 90  FCLERFDVGIWSSARRTNLETALDCVIGELKGRLLFVWDQDDCTDSGFSTKENKNKPIFF 149

Query: 42  -----------SILSVPVGQYSSSNTLLIDTDPYKALLNPPKTAIFPTEYKPSDVNDNAL 90
                      S L    GQYSSSNT+LID  PYKALLNPP TAIFPTEYKP  ++D  L
Sbjct: 150 KELKKLWDNESSNLPWRKGQYSSSNTILIDDKPYKALLNPPSTAIFPTEYKPDQLDDATL 209

Query: 91  ------------------------EHPFGQPAISPLHPDWNYYSKII 113
                                   EHPFGQ AI+ +HPDW++YS II
Sbjct: 210 GPNGELRLYLDGLARAADVPGYVKEHPFGQSAITAIHPDWDFYSNII 256

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481927|gb|ABK92897.1| unknown [Populus trichocarpa]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 87/167 (52%), Gaps = 56/167 (33%)

Query: 3   FCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAWH--------------------- 41
           FCLERF+VGIWSSAR   +  AL+C++  L+G+LLF W                      
Sbjct: 86  FCLERFDVGIWSSARRTNLETALDCVIGELKGRLLFVWDQDDCTDSGFSTKENKNKPIFF 145

Query: 42  -----------SILSVPVGQYSSSNTLLIDTDPYKALLNPPKTAIFPTEYKPSDVNDNAL 90
                      S L    GQYSSSNT+LID  PYKALLNPP TAIFPTEYKP  ++D  L
Sbjct: 146 KELKKLWDNESSNLPWRKGQYSSSNTILIDDKPYKALLNPPSTAIFPTEYKPDQLDDATL 205

Query: 91  ------------------------EHPFGQPAISPLHPDWNYYSKII 113
                                   EHPFGQ AI+ +HPDW++YS II
Sbjct: 206 GPNGELRLYLDGLARAADVPGYVKEHPFGQSAITAIHPDWDFYSNII 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526475|ref|XP_004170239.1| PREDICTED: uncharacterized LOC101207591 [Cucumis sativus]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 65/113 (57%), Gaps = 32/113 (28%)

Query: 1   MDFCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAWHSI------------LSVPV 48
           M FCLERFEVGIWSSA+EWY+++AL+ IM GLR +LLFAW                S P+
Sbjct: 13  MKFCLERFEVGIWSSAKEWYLDSALDSIMYGLRSRLLFAWDQGECTKTCFFDLENKSKPI 72

Query: 49  --------------------GQYSSSNTLLIDTDPYKALLNPPKTAIFPTEYK 81
                                Q+ SSNTLLID +PYK LLNPP T IFP EYK
Sbjct: 73  FLKELKKVWEGNGVGILRSSTQFCSSNTLLIDNEPYKVLLNPPNTVIFPNEYK 125

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518769|gb|AFK47446.1| unknown [Medicago truncatula]

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 78/167 (46%), Gaps = 52/167 (31%)

Query: 1   MDFCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAW--HSILSVPV---------- 48
           M FCLERFEVG+WSSA E  ++ AL C +   + KLLF W  H                 
Sbjct: 91  MKFCLERFEVGVWSSAMEHNVDGALACAIGDSKNKLLFVWDQHKCRDSGFKSLENNKKPL 150

Query: 49  ---------------GQYSSSNTLLIDTDPYKALLNPPKTA-IFPTEYKPSDVNDNAL-- 90
                          G YS+SNTLLID  PYK+ LNPP T+ IFP  Y P D +D AL  
Sbjct: 151 FFKELKKVWDTIKKGGPYSASNTLLIDDKPYKSFLNPPNTSIIFPKSYDPEDKDDKALDP 210

Query: 91  ----------------------EHPFGQPAISPLHPDWNYYSKIIRR 115
                                 ++  G+PAI+  HPDW +YS++  R
Sbjct: 211 NGDICKYLKGVAEAEDVQSYVKDNAIGEPAITTSHPDWAFYSRVRSR 257

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451723|ref|XP_002276922.1| PREDICTED: uncharacterized protein LOC100244680 [Vitis vinifera]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 75/170 (44%), Gaps = 56/170 (32%)

Query: 1   MDFCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAW----------------HSIL 44
           + FC ERF+VGIWSS  +  +   ++ ++  ++ KLLF W                H  L
Sbjct: 261 LKFCFERFDVGIWSSRTKKNVEQVVDYLLGDMKHKLLFCWDLSHCTDTGFKTLENRHKTL 320

Query: 45  SV----------------PVGQYSSSNTLLIDTDPYKALLNPPKTAIFPTEYKPSDVNDN 88
                             P G Y+ SNTLL+D  PYKALLNPP TAIFP  Y   D +DN
Sbjct: 321 VFKELRNIWDKCDPNLPWPKGDYNESNTLLVDDSPYKALLNPPHTAIFPNSYTYQDKSDN 380

Query: 89  AL------------------------EHPFGQPAISPLHPDWNYYSKIIR 114
           +L                         HPFGQ A++   P W YY  I+R
Sbjct: 381 SLGLGGELQVYLEGLAMAGDVKMYVERHPFGQSALTEQSPSWGYYHSILR 430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
TAIR|locus:2044862	249	AT2G36540 "AT2G36540" [Arabido	0.770	0.377	0.436	1.2e-12
TAIR|locus:2091823	465	AT3G29760 "AT3G29760" [Arabido	0.311	0.081	0.421	5.5e-10

TAIR|locus:2044862 AT2G36540 "AT2G36540" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 48/110 (43%), Positives = 59/110 (53%)

Query:     1 MDFCLERFEVGIWSSAREWYMN-NAL------NCIMVGL-----RGKLLFA--WHSILSV 46
             M FCLERFEVGIWSSA E   + N L       C   G      R K LF      +   
Sbjct:    96 MKFCLERFEVGIWSSACELVSSLNILIVTGPRECTDSGYKTLENRYKPLFFKDLSKVFKC 155

Query:    47 PVGQYSSSNTLLIDTDPYKALLNPPKTAIFPTEYKPSDVNDNALEHPFGQ 96
               G +S+SNT+ ID +PYKAL NP  T +FP  Y  S++ DN L+ P G+
Sbjct:   156 FKG-FSASNTIFIDDEPYKALRNPDNTGLFPMSYDASNIKDNLLD-PEGE 203

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2091823 AT3G29760 "AT3G29760" [Arabidopsis thaliana (taxid:3702)]

 Score = 90 (36.7 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query:     3 FCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAW 40
             FC ++FEVGIWSS ++  +      ++  L+ KLLF W
Sbjct:   350 FCFDKFEVGIWSSRKQNNVVRITEFLLGDLKSKLLFCW 387

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_X3308 SubName- Full=Putative uncharacterized protein; (270 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
TIGR02245	195	HAD_IIID1 HAD-superfamily subfamily IIID hydrolase	99.82
PF03031	159	NIF: NLI interacting factor-like phosphatase; Inte	99.51
TIGR02251	162	HIF-SF_euk Dullard-like phosphatase domain. This d	99.45
smart00577	148	CPDc catalytic domain of ctd-like phosphatases.	98.9
TIGR02250	156	FCP1_euk FCP1-like phosphatase, phosphatase domain	98.75
KOG1605	262	consensus TFIIF-interacting CTD phosphatase, inclu	98.54
COG5190	390	FCP1 TFIIF-interacting CTD phosphatases, including	94.39
KOG2832	393	consensus TFIIF-interacting CTD phosphatase, inclu	91.34
KOG0323	635	consensus TFIIF-interacting CTD phosphatases, incl	87.97

>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245

Probab=99.82  E-value=7.2e-21  Score=148.76  Aligned_cols=87  Identities=20%  Similarity=0.221  Sum_probs=71.9

Q ss_pred             CchhhccceEEEEccCCccc--------------------ccccccccc---cCcCceeeEEEeccccccc-C-CCCCcc
Q 039355            1 MDFCLERFEVGIWSSAREWY--------------------MNNALNCIM---VGLRGKLLFAWHSILSVPV-G-QYSSSN   55 (122)
Q Consensus         1 L~fc~~~F~V~VWSSa~~~n--------------------vw~~~~ct~---~~~~~k~~~~K~L~~vW~~-g-~~~~sN   55 (122)
                      |++|+++|+|+|||||++.|                    +|  ++|..   ..++.+..++|+|+.+|++ | .|+++|
T Consensus        54 L~~~~~~feIvVwTAa~~~ya~~~l~~l~~~~~~~~~i~~~l--d~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~n  131 (195)
T TIGR02245        54 LTSAYEDYDIVIWSATSMKWIEIKMTELGVLTNPNYKITFLL--DSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKN  131 (195)
T ss_pred             HHHHHhCCEEEEEecCCHHHHHHHHHHhcccCCccceEEEEe--ccccceeeEeeccCcEEEeecHHhhhhcccCCCccc
Confidence            67999999999999998877                    44  44532   2344666789999999985 3 479999


Q ss_pred             eEEEeCCcchhhcCCCCeeecCCCCCCC---CCCCCcc
Q 039355           56 TLLIDTDPYKALLNPPKTAIFPTEYKPS---DVNDNAL   90 (122)
Q Consensus        56 TlLIDDSP~Ka~~nP~n~aI~p~~y~~~---~~~D~~L   90 (122)
                      ||||||+|+++++||.| +|.+.+|.++   +.+|.+|
T Consensus       132 tiiVDd~p~~~~~~P~N-~i~I~~f~~~~~~~~~D~eL  168 (195)
T TIGR02245       132 TIMFDDLRRNFLMNPQN-GLKIRPFKKAHANRGTDQEL  168 (195)
T ss_pred             EEEEeCCHHHHhcCCCC-ccccCCccccCCCCcccHHH
Confidence            99999999999999987 9999999975   4678888

This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.

>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear

Probab=99.51  E-value=4.5e-15  Score=108.16  Aligned_cols=81  Identities=23%  Similarity=0.287  Sum_probs=55.7

Q ss_pred             CchhhccceEEEEccCCccc-----------------ccccccccccCcCceeeEEEecccccccCCCCCcceEEEeCCc
Q 039355            1 MDFCLERFEVGIWSSAREWY-----------------MNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDP   63 (122)
Q Consensus         1 L~fc~~~F~V~VWSSa~~~n-----------------vw~~~~ct~~~~~~k~~~~K~L~~vW~~g~~~~sNTlLIDDSP   63 (122)
                      |++|.++|+|+|||++++.|                 +|.|++|+..   .+. ..|+|+++    +.+.+|||||||+|
T Consensus        45 L~~l~~~~ev~i~T~~~~~ya~~v~~~ldp~~~~~~~~~~r~~~~~~---~~~-~~KdL~~l----~~~~~~vvivDD~~  116 (159)
T PF03031_consen   45 LEELSKHYEVVIWTSASEEYAEPVLDALDPNGKLFSRRLYRDDCTFD---KGS-YIKDLSKL----GRDLDNVVIVDDSP  116 (159)
T ss_dssp             HHHHHHHCEEEEE-SS-HHHHHHHHHHHTTTTSSEEEEEEGGGSEEE---TTE-EE--GGGS----SS-GGGEEEEES-G
T ss_pred             HHHHHHhceEEEEEeehhhhhhHHHHhhhhhcccccccccccccccc---ccc-cccchHHH----hhccccEEEEeCCH
Confidence            46789999999999999999                 7778888732   222 25999999    35899999999999


Q ss_pred             chhhcCCCCeeecCCCCCCCCCCCCcc
Q 039355           64 YKALLNPPKTAIFPTEYKPSDVNDNAL   90 (122)
Q Consensus        64 ~Ka~~nP~n~aI~p~~y~~~~~~D~~L   90 (122)
                      .++..||.| +|.+.+|.++..+|.+|
T Consensus       117 ~~~~~~~~N-~i~v~~f~~~~~~D~~L  142 (159)
T PF03031_consen  117 RKWALQPDN-GIPVPPFFGDTPNDREL  142 (159)
T ss_dssp             GGGTTSGGG-EEE----SSCHTT--HH
T ss_pred             HHeeccCCc-eEEeccccCCCcchhHH
Confidence            999999876 88888999964568887

It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....

>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain

Probab=99.45  E-value=5e-14  Score=105.47  Aligned_cols=80  Identities=24%  Similarity=0.321  Sum_probs=69.2

Q ss_pred             CchhhccceEEEEccCCccc-----------------ccccccccccCcCceeeEEEecccccccCCCCCcceEEEeCCc
Q 039355            1 MDFCLERFEVGIWSSAREWY-----------------MNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDP   63 (122)
Q Consensus         1 L~fc~~~F~V~VWSSa~~~n-----------------vw~~~~ct~~~~~~k~~~~K~L~~vW~~g~~~~sNTlLIDDSP   63 (122)
                      |+.|.++|+|+||||+.+.|                 ++.|++|+..    ++.+.|+|++++    .+.+++|+|||+|
T Consensus        51 L~~l~~~yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~----~~~~~K~L~~l~----~~~~~vIiVDD~~  122 (162)
T TIGR02251        51 LERVSKWYELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFT----NGKYVKDLSLVG----KDLSKVIIIDNSP  122 (162)
T ss_pred             HHHHHhcCEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEe----CCCEEeEchhcC----CChhhEEEEeCCh
Confidence            56789999999999999998                 7788888764    333799999986    5789999999999


Q ss_pred             chhhcCCCCeeecCCCCCCCCCCCCcc
Q 039355           64 YKALLNPPKTAIFPTEYKPSDVNDNAL   90 (122)
Q Consensus        64 ~Ka~~nP~n~aI~p~~y~~~~~~D~~L   90 (122)
                      ..+..+|.| +|.+.+|.+ +.+|++|
T Consensus       123 ~~~~~~~~N-gI~i~~f~~-~~~D~~L  147 (162)
T TIGR02251       123 YSYSLQPDN-AIPIKSWFG-DPNDTEL  147 (162)
T ss_pred             hhhccCccC-EeecCCCCC-CCCHHHH
Confidence            999999986 999999998 5579888

This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.

>smart00577 CPDc catalytic domain of ctd-like phosphatases

Probab=98.90  E-value=1.7e-09  Score=79.20  Aligned_cols=75  Identities=19%  Similarity=0.185  Sum_probs=60.7

Q ss_pred             CchhhccceEEEEccCCccc-----------------ccccccccccCcCceeeEEEecccccccCCCCCcceEEEeCCc
Q 039355            1 MDFCLERFEVGIWSSAREWY-----------------MNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDP   63 (122)
Q Consensus         1 L~fc~~~F~V~VWSSa~~~n-----------------vw~~~~ct~~~~~~k~~~~K~L~~vW~~g~~~~sNTlLIDDSP   63 (122)
                      |++|.++|.+|||||+...+                 |+++++|..    .||.++|.|++++    -+++++|+|||+|
T Consensus        54 L~~L~~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~----~KP~~~k~l~~l~----~~p~~~i~i~Ds~  125 (148)
T smart00577       54 LKRASELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVF----VKGKYVKDLSLLG----RDLSNVIIIDDSP  125 (148)
T ss_pred             HHHHHhccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccc----cCCeEeecHHHcC----CChhcEEEEECCH
Confidence            46778899999999999998                 233333322    6777999999885    4789999999999


Q ss_pred             chhhcCCCCeeecCCCCCCCC
Q 039355           64 YKALLNPPKTAIFPTEYKPSD   84 (122)
Q Consensus        64 ~Ka~~nP~n~aI~p~~y~~~~   84 (122)
                      .....+|.| +|...+|.++.
T Consensus       126 ~~~~aa~~n-gI~i~~f~~~~  145 (148)
T smart00577      126 DSWPFHPEN-LIPIKPWFGDP  145 (148)
T ss_pred             HHhhcCccC-EEEecCcCCCC
Confidence            999999875 99999999954

>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain

Probab=98.75  E-value=5e-09  Score=78.75  Aligned_cols=71  Identities=10%  Similarity=0.012  Sum_probs=57.1

Q ss_pred             CchhhccceEEEEccCCccc------------------ccccccccccCcCceeeEEEecccccccCCCCCcceEEEeCC
Q 039355            1 MDFCLERFEVGIWSSAREWY------------------MNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTD   62 (122)
Q Consensus         1 L~fc~~~F~V~VWSSa~~~n------------------vw~~~~ct~~~~~~k~~~~K~L~~vW~~g~~~~sNTlLIDDS   62 (122)
                      |+.|.++|+++|+|++.+.+                  +.++++|+       ....|+|+.++   +.+.+++|||||+
T Consensus        67 L~~l~~~yel~I~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~-------~~~~KdL~~i~---~~d~~~vvivDd~  136 (156)
T TIGR02250        67 LKEASKLYEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESG-------SPHTKSLLRLF---PADESMVVIIDDR  136 (156)
T ss_pred             HHHHHhhcEEEEEeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCC-------CCccccHHHHc---CCCcccEEEEeCC
Confidence            35677899999999999988                  44555553       23479997776   4578999999999


Q ss_pred             cchhhcCCCCeeecCCCCCC
Q 039355           63 PYKALLNPPKTAIFPTEYKP   82 (122)
Q Consensus        63 P~Ka~~nP~n~aI~p~~y~~   82 (122)
                      |.....||.| +|...+|.+
T Consensus       137 ~~~~~~~~~N-~i~i~~~~~  155 (156)
T TIGR02250       137 EDVWPWHKRN-LIQIEPYNY  155 (156)
T ss_pred             HHHhhcCccC-EEEeCCccc
Confidence            9999999986 998889865

This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.

>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]

Probab=98.54  E-value=1e-08  Score=83.96  Aligned_cols=84  Identities=15%  Similarity=0.141  Sum_probs=60.0

Q ss_pred             hccceEEEEccCCccc------ccccccc-cccCcCceeeEEEeccccccc--CCCCCcceEEEeCCcchhhcCCCCeee
Q 039355            5 LERFEVGIWSSAREWY------MNNALNC-IMVGLRGKLLFAWHSILSVPV--GQYSSSNTLLIDTDPYKALLNPPKTAI   75 (122)
Q Consensus         5 ~~~F~V~VWSSa~~~n------vw~~~~c-t~~~~~~k~~~~K~L~~vW~~--g~~~~sNTlLIDDSP~Ka~~nP~n~aI   75 (122)
                      -+.|+++|-++..+.|      +|++.+- ....+-....++++..-+|+.  .+.+.+|||||||||..++.||.| ||
T Consensus       144 s~~~e~v~FTAs~~~Ya~~v~D~LD~~~~i~~~RlyR~~C~~~~g~yvKdls~~~~dL~~viIiDNsP~sy~~~p~N-gI  222 (262)
T KOG1605|consen  144 SKWYELVLFTASLEVYADPLLDILDPDRKIISHRLYRDSCTLKDGNYVKDLSVLGRDLSKVIIVDNSPQSYRLQPEN-GI  222 (262)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHccCCCCeeeeeecccceEeECCcEEEEcceeccCcccEEEEcCChHHhccCccC-CC
Confidence            3567788888888888      5665222 222233444456666666652  244999999999999999999976 99


Q ss_pred             cCCCCCCCCCCCCcc
Q 039355           76 FPTEYKPSDVNDNAL   90 (122)
Q Consensus        76 ~p~~y~~~~~~D~~L   90 (122)
                      .+.+|..+. .|.||
T Consensus       223 pI~sw~~d~-~D~eL  236 (262)
T KOG1605|consen  223 PIKSWFDDP-TDTEL  236 (262)
T ss_pred             cccccccCC-ChHHH
Confidence            999999854 59998

>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]

Probab=94.39  E-value=0.037  Score=48.03  Aligned_cols=81  Identities=14%  Similarity=0.149  Sum_probs=57.8

Q ss_pred             hhhccceEEEEccCCccc------ccccccccc------cCcC-ceeeEEEecccccccCCCCCcceEEEeCCcchhhcC
Q 039355            3 FCLERFEVGIWSSAREWY------MNNALNCIM------VGLR-GKLLFAWHSILSVPVGQYSSSNTLLIDTDPYKALLN   69 (122)
Q Consensus         3 fc~~~F~V~VWSSa~~~n------vw~~~~ct~------~~~~-~k~~~~K~L~~vW~~g~~~~sNTlLIDDSP~Ka~~n   69 (122)
                      ++-+-|+|-+||+....+      +.+..+...      +... ... +.|||..+-    .+.+.|||||.+|+=...+
T Consensus       263 ~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k~~~~~lfr~sc~~~~G~-~ikDis~i~----r~l~~viiId~~p~SY~~~  337 (390)
T COG5190         263 KLSKIHELVYFTASVKRYADPVLDILDSDKVFSHRLFRESCVSYLGV-YIKDISKIG----RSLDKVIIIDNSPASYEFH  337 (390)
T ss_pred             hhhhhEEEEEEecchhhhcchHHHhccccceeehhhhcccceeccCc-hhhhHHhhc----cCCCceEEeeCChhhhhhC
Confidence            344669999999998888      333333110      1111 233 688887763    7789999999999999999


Q ss_pred             CCCeeecCCCCCCCCCCCCcc
Q 039355           70 PPKTAIFPTEYKPSDVNDNAL   90 (122)
Q Consensus        70 P~n~aI~p~~y~~~~~~D~~L   90 (122)
                      |-| +|...++..+- .|++|
T Consensus       338 p~~-~i~i~~W~~d~-~d~el  356 (390)
T COG5190         338 PEN-AIPIEKWISDE-HDDEL  356 (390)
T ss_pred             ccc-eeccCcccccc-cchhh
Confidence            975 88888999863 46666

>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]

Probab=91.34  E-value=0.27  Score=42.95  Aligned_cols=83  Identities=12%  Similarity=0.115  Sum_probs=61.7

Q ss_pred             CchhhccceEEEEccCCccc------cccccccc-------ccCcCceeeEEEecccccccCCCCCcceEEEeCCcchhh
Q 039355            1 MDFCLERFEVGIWSSAREWY------MNNALNCI-------MVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDPYKAL   67 (122)
Q Consensus         1 L~fc~~~F~V~VWSSa~~~n------vw~~~~ct-------~~~~~~k~~~~K~L~~vW~~g~~~~sNTlLIDDSP~Ka~   67 (122)
                      |..|-..|++.|.||-+.-+      -|+-..|.       .+.+.+.+. +|||.++=+    +.+..|.||=.++-..
T Consensus       223 L~~~a~~yEIVi~sse~gmt~~pl~d~lDP~g~IsYkLfr~~t~y~~G~H-vKdls~LNR----dl~kVivVd~d~~~~~  297 (393)
T KOG2832|consen  223 LGHLAKYYEIVVYSSEQGMTVFPLLDALDPKGYISYKLFRGATKYEEGHH-VKDLSKLNR----DLQKVIVVDFDANSYK  297 (393)
T ss_pred             HHhhcccceEEEEecCCccchhhhHhhcCCcceEEEEEecCcccccCccc-hhhhhhhcc----ccceeEEEEccccccc
Confidence            35678899999999988877      34444443       233333222 899988854    4688999999999999


Q ss_pred             cCCCCeeecCCCCCCCCCCCCcc
Q 039355           68 LNPPKTAIFPTEYKPSDVNDNAL   90 (122)
Q Consensus        68 ~nP~n~aI~p~~y~~~~~~D~~L   90 (122)
                      ++|.| .|-.+++.+ +.+|..|
T Consensus       298 l~P~N-~l~l~~W~G-n~dDt~L  318 (393)
T KOG2832|consen  298 LQPEN-MLPLEPWSG-NDDDTSL  318 (393)
T ss_pred             cCccc-ccccCcCCC-Ccccchh
Confidence            99987 777789999 5568777

>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]

Probab=87.97  E-value=0.61  Score=42.96  Aligned_cols=79  Identities=11%  Similarity=0.053  Sum_probs=54.3

Q ss_pred             CchhhccceEEEEccCCccc---ccccccccccCcCceeeEEE--------ecccccccCCCCCcceEEEeCCcchhhcC
Q 039355            1 MDFCLERFEVGIWSSAREWY---MNNALNCIMVGLRGKLLFAW--------HSILSVPVGQYSSSNTLLIDTDPYKALLN   69 (122)
Q Consensus         1 L~fc~~~F~V~VWSSa~~~n---vw~~~~ct~~~~~~k~~~~K--------~L~~vW~~g~~~~sNTlLIDDSP~Ka~~n   69 (122)
                      |+++-+.|++-|.+-+...|   ||...+=+.--|.++++..+        +|.++.   .=..++.+||||++...-..
T Consensus       210 L~~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde~~~~kt~dL~~~~---p~g~smvvIIDDr~dVW~~~  286 (635)
T KOG0323|consen  210 LKEANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDESPFFKTLDLVLLF---PCGDSMVVIIDDRSDVWPDH  286 (635)
T ss_pred             HHHHHhhceeEEEeccchHHHHHHHHHhCCCCccccceEEEecCCCcccccccccCC---CCCCccEEEEeCccccccCC
Confidence            46677899999999999999   44443333333334444433        333333   34578899999999999888


Q ss_pred             CCCeeecCCCCCCC
Q 039355           70 PPKTAIFPTEYKPS   83 (122)
Q Consensus        70 P~n~aI~p~~y~~~   83 (122)
                      +.| +|.+.+|.+-
T Consensus       287 ~~n-LI~i~~y~yF  299 (635)
T KOG0323|consen  287 KRN-LIQIAPYPYF  299 (635)
T ss_pred             Ccc-eEEeeeeecc
Confidence            874 8877777663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	8e-08

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 47.9 bits (113), Expect = 8e-08
 Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 26/117 (22%)

Query: 1   MDFCLERFEVGIWSSAREWYMNNALNCIMVG--LRGKLLFAWH----------------- 41
           +    E +++ IWS+    ++   +  + V      K++F                    
Sbjct: 173 LTSAYEDYDIVIWSATSMRWIEEKMRLLGVASNDNYKVMFYLDSTAMISVHVPERGVVDV 232

Query: 42  ---SILSVPVGQYSSSNTLLIDTDPYKALLNPPKTAIFPTEYKPS---DVNDNALEH 92
               ++     QY+SSNT++ D      L+N PK+ +    ++ +      D  L  
Sbjct: 233 KPLGVIWALYKQYNSSNTIMFDDIRRNFLMN-PKSGLKIRPFRQAHLNRGTDTELLK 288

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.6
3qle_A	204	TIM50P; chaperone, mitochondrion, preprotein trans	99.43
2ght_A	181	Carboxy-terminal domain RNA polymerase II polypept	99.32
2hhl_A	195	CTD small phosphatase-like protein; CTD phosphatas	99.26
3ef0_A	372	RNA polymerase II subunit A C-terminal domain phos	98.83
3ef1_A	442	RNA polymerase II subunit A C-terminal domain phos	98.72

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.60  E-value=1.6e-16  Score=129.97  Aligned_cols=89  Identities=19%  Similarity=0.231  Sum_probs=72.8

Q ss_pred             CchhhccceEEEEccCCccc---------c---------cccccccc---cCcCceeeEEEeccccccc-CCCCCcceEE
Q 039355            1 MDFCLERFEVGIWSSAREWY---------M---------NNALNCIM---VGLRGKLLFAWHSILSVPV-GQYSSSNTLL   58 (122)
Q Consensus         1 L~fc~~~F~V~VWSSa~~~n---------v---------w~~~~ct~---~~~~~k~~~~K~L~~vW~~-g~~~~sNTlL   58 (122)
                      |++|.++|+|+||||+.+.|         .         .-+++|+.   .....+..++|+|+++|.+ ++++++||||
T Consensus       173 L~~l~~~yeivIfTas~~~ya~~vld~Ld~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~vKdLs~Lw~~~p~rdl~~tIi  252 (320)
T 3shq_A          173 LTSAYEDYDIVIWSATSMRWIEEKMRLLGVASNDNYKVMFYLDSTAMISVHVPERGVVDVKPLGVIWALYKQYNSSNTIM  252 (320)
T ss_dssp             HHHHHHHEEEEEECSSCHHHHHHHHHHTTCTTCSSCCCCEEECGGGCEEEEETTTEEEEECCHHHHHHHCTTCCGGGEEE
T ss_pred             HHHHHhCCEEEEEcCCcHHHHHHHHHHhCCCCCcceeEEEEEcCCccccccccCCCCEEEEEhHHhhcccCCCChhHEEE
Confidence            57899999999999999999         1         12455542   2234466789999999975 4699999999


Q ss_pred             EeCCcchhhcCCCCeeecCCCCCCC---CCCCCcc
Q 039355           59 IDTDPYKALLNPPKTAIFPTEYKPS---DVNDNAL   90 (122)
Q Consensus        59 IDDSP~Ka~~nP~n~aI~p~~y~~~---~~~D~~L   90 (122)
                      |||+|+++.+||.| +|.+.+|.++   +.+|++|
T Consensus       253 IDdsp~~~~~~p~N-gI~I~~~~~~~~~~~~D~eL  286 (320)
T 3shq_A          253 FDDIRRNFLMNPKS-GLKIRPFRQAHLNRGTDTEL  286 (320)
T ss_dssp             EESCGGGGTTSGGG-EEECCCCCCHHHHTTTCCHH
T ss_pred             EeCChHHhccCcCc-eEEeCeEcCCCCCCCccHHH
Confidence            99999999999976 9999999885   3679988

>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}

Probab=99.43  E-value=5e-14  Score=109.07  Aligned_cols=79  Identities=22%  Similarity=0.260  Sum_probs=66.9

Q ss_pred             CchhhccceEEEEccCCccc-----------------ccccccccccCcCceeeEEEecccccccCCCCCcceEEEeCCc
Q 039355            1 MDFCLERFEVGIWSSAREWY-----------------MNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDP   63 (122)
Q Consensus         1 L~fc~~~F~V~VWSSa~~~n-----------------vw~~~~ct~~~~~~k~~~~K~L~~vW~~g~~~~sNTlLIDDSP   63 (122)
                      |++|.++|+|+||||+.+.|                 +|.|++|+..    ...++|+|+++.    .+++|||||||+|
T Consensus        68 L~~l~~~yeivI~Tas~~~ya~~vl~~LDp~~~~f~~rl~R~~c~~~----~g~y~KdL~~Lg----rdl~~vIiIDDsp  139 (204)
T 3qle_A           68 LGYLSQYYEIVLFSSNYMMYSDKIAEKLDPIHAFVSYNLFKEHCVYK----DGVHIKDLSKLN----RDLSKVIIIDTDP  139 (204)
T ss_dssp             HHHHTTTEEEEEECSSCHHHHHHHHHHTSTTCSSEEEEECGGGSEEE----TTEEECCGGGSC----SCGGGEEEEESCT
T ss_pred             HHHHHhCCEEEEEcCCcHHHHHHHHHHhCCCCCeEEEEEEecceeEE----CCeeeecHHHhC----CChHHEEEEECCH
Confidence            57889999999999999888                 6778888752    234799999994    5789999999999


Q ss_pred             chhhcCCCCeeecCCCCCCCCCCCCcc
Q 039355           64 YKALLNPPKTAIFPTEYKPSDVNDNAL   90 (122)
Q Consensus        64 ~Ka~~nP~n~aI~p~~y~~~~~~D~~L   90 (122)
                      .....||.| +|.+.+|.++  .|++|
T Consensus       140 ~~~~~~p~N-~I~I~~~~~~--~D~eL  163 (204)
T 3qle_A          140 NSYKLQPEN-AIPMEPWNGE--ADDKL  163 (204)
T ss_dssp             TTTTTCGGG-EEECCCCCSS--CCCHH
T ss_pred             HHHhhCccC-ceEeeeECCC--CChhH
Confidence            999999976 9999999873  47788

>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A

Probab=99.32  E-value=9.9e-13  Score=98.10  Aligned_cols=80  Identities=15%  Similarity=0.216  Sum_probs=68.1

Q ss_pred             CchhhccceEEEEccCCccc----------------ccccccccccCcCceeeEEEecccccccCCCCCcceEEEeCCcc
Q 039355            1 MDFCLERFEVGIWSSAREWY----------------MNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDPY   64 (122)
Q Consensus         1 L~fc~~~F~V~VWSSa~~~n----------------vw~~~~ct~~~~~~k~~~~K~L~~vW~~g~~~~sNTlLIDDSP~   64 (122)
                      |++|.++|+++||||+.+.+                ++.+++|+.    .|..++|+|+++    +.++++||+|||||.
T Consensus        64 L~~l~~~~~i~I~T~~~~~~a~~vl~~ld~~~~f~~~~~rd~~~~----~k~~~~k~L~~L----g~~~~~~vivdDs~~  135 (181)
T 2ght_A           64 LQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVF----HRGNYVKDLSRL----GRDLRRVLILDNSPA  135 (181)
T ss_dssp             HHHHHHHSEEEEECSSCHHHHHHHHHHHCTTCCEEEEECGGGSEE----ETTEEECCGGGT----CSCGGGEEEECSCGG
T ss_pred             HHHHHhCCCEEEEcCCCHHHHHHHHHHHCCCCcEEEEEeccCcee----cCCcEeccHHHh----CCCcceEEEEeCCHH
Confidence            46788899999999999988                666777765    345689999988    478999999999999


Q ss_pred             hhhcCCCCeeecCCCCCCCCCCCCcc
Q 039355           65 KALLNPPKTAIFPTEYKPSDVNDNAL   90 (122)
Q Consensus        65 Ka~~nP~n~aI~p~~y~~~~~~D~~L   90 (122)
                      ....+|.| +|.+.+|.+ +.+|++|
T Consensus       136 ~~~~~~~n-gi~i~~~~~-~~~D~eL  159 (181)
T 2ght_A          136 SYVFHPDN-AVPVASWFD-NMSDTEL  159 (181)
T ss_dssp             GGTTCTTS-BCCCCCCSS-CTTCCHH
T ss_pred             HhccCcCC-EeEeccccC-CCChHHH
Confidence            99999986 888899987 5679888

>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}

Probab=99.26  E-value=2.3e-12  Score=97.71  Aligned_cols=80  Identities=15%  Similarity=0.217  Sum_probs=68.6

Q ss_pred             CchhhccceEEEEccCCccc----------------ccccccccccCcCceeeEEEecccccccCCCCCcceEEEeCCcc
Q 039355            1 MDFCLERFEVGIWSSAREWY----------------MNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDPY   64 (122)
Q Consensus         1 L~fc~~~F~V~VWSSa~~~n----------------vw~~~~ct~~~~~~k~~~~K~L~~vW~~g~~~~sNTlLIDDSP~   64 (122)
                      |++|.++|+++||||+.+.+                ++.+++|+.    .|..++|+|++++    .++++||+|||||.
T Consensus        77 L~~l~~~~~i~I~Tss~~~~a~~vl~~ld~~~~f~~~l~rd~~~~----~k~~~lK~L~~Lg----~~~~~~vivDDs~~  148 (195)
T 2hhl_A           77 LQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVF----HRGNYVKDLSRLG----RELSKVIIVDNSPA  148 (195)
T ss_dssp             HHHHHHHSEEEEECSSCHHHHHHHHHHHCCSSCEEEEECGGGCEE----ETTEEECCGGGSS----SCGGGEEEEESCGG
T ss_pred             HHHHHcCCeEEEEcCCCHHHHHHHHHHhCCcccEEEEEEccccee----cCCceeeeHhHhC----CChhHEEEEECCHH
Confidence            46788899999999999988                667777775    3456899999995    67899999999999


Q ss_pred             hhhcCCCCeeecCCCCCCCCCCCCcc
Q 039355           65 KALLNPPKTAIFPTEYKPSDVNDNAL   90 (122)
Q Consensus        65 Ka~~nP~n~aI~p~~y~~~~~~D~~L   90 (122)
                      ....+|.| +|.+.+|.+ +.+|++|
T Consensus       149 ~~~~~~~n-gi~i~~~~~-~~~D~eL  172 (195)
T 2hhl_A          149 SYIFHPEN-AVPVQSWFD-DMTDTEL  172 (195)
T ss_dssp             GGTTCGGG-EEECCCCSS-CTTCCHH
T ss_pred             HhhhCccC-ccEEeeecC-CCChHHH
Confidence            99999976 898899987 5679998

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}

Probab=98.83  E-value=2.1e-09  Score=89.53  Aligned_cols=71  Identities=17%  Similarity=0.059  Sum_probs=57.4

Q ss_pred             CchhhccceEEEEccCCccc------------------ccccccccccCcCceeeEEEecccccccCCCCCcceEEEeCC
Q 039355            1 MDFCLERFEVGIWSSAREWY------------------MNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTD   62 (122)
Q Consensus         1 L~fc~~~F~V~VWSSa~~~n------------------vw~~~~ct~~~~~~k~~~~K~L~~vW~~g~~~~sNTlLIDDS   62 (122)
                      |++|.+.|+|+|||++.+.|                  +.+|++|+       ..+.|+|++++   +.+.+++|||||+
T Consensus        84 L~~l~~~yeivI~Tas~~~yA~~vl~~LDp~~~~f~~ri~sr~~~g-------~~~~KdL~~L~---~~dl~~viiiDd~  153 (372)
T 3ef0_A           84 LQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSG-------SLAQKSLRRLF---PCDTSMVVVIDDR  153 (372)
T ss_dssp             HHHHHTTEEEEEECSSCHHHHHHHHHHHCTTSCSSSSCEECTTTSS-------CSSCCCGGGTC---SSCCTTEEEEESC
T ss_pred             HHHHhcCcEEEEEeCCcHHHHHHHHHHhccCCceeeeEEEEecCCC-------CcceecHHHhc---CCCCceEEEEeCC
Confidence            46788999999999999999                  12233331       23589999887   4789999999999


Q ss_pred             cchhhcCCCCeeecCCCCCCC
Q 039355           63 PYKALLNPPKTAIFPTEYKPS   83 (122)
Q Consensus        63 P~Ka~~nP~n~aI~p~~y~~~   83 (122)
                      |.....|| | +|.+.+|.+.
T Consensus       154 ~~~~~~~p-N-~I~i~~~~~f  172 (372)
T 3ef0_A          154 GDVWDWNP-N-LIKVVPYEFF  172 (372)
T ss_dssp             SGGGTTCT-T-EEECCCCCCS
T ss_pred             HHHcCCCC-c-EeeeCCcccc
Confidence            99999997 5 9999999875

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}

Probab=98.72  E-value=7.2e-09  Score=88.62  Aligned_cols=78  Identities=21%  Similarity=0.129  Sum_probs=60.1

Q ss_pred             CchhhccceEEEEccCCccc------------------ccccccccccCcCceeeEEEecccccccCCCCCcceEEEeCC
Q 039355            1 MDFCLERFEVGIWSSAREWY------------------MNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTD   62 (122)
Q Consensus         1 L~fc~~~F~V~VWSSa~~~n------------------vw~~~~ct~~~~~~k~~~~K~L~~vW~~g~~~~sNTlLIDDS   62 (122)
                      |++|.+.|+|.|||++.+.|                  +..|++|+       ..+.|+|+++.   +.+.+.+|||||+
T Consensus        92 L~~ls~~yEivIfTas~~~YA~~Vl~~LDp~~~~f~~Rl~sRd~cg-------~~~~KdL~~ll---~rdl~~vvIIDd~  161 (442)
T 3ef1_A           92 LQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSG-------SLAQKSLRRLF---PCDTSMVVVIDDR  161 (442)
T ss_dssp             HHHHTTTEEEEEECSSCHHHHHHHHHHHCTTSTTTTTCEECTTTSS-------CSSCCCGGGTC---SSCCTTEEEEESC
T ss_pred             HHHHhCCcEEEEEcCCCHHHHHHHHHHhccCCccccceEEEecCCC-------CceeeehHHhc---CCCcceEEEEECC
Confidence            56788999999999999999                  23344442       13579999875   4788999999999


Q ss_pred             cchhhcCCCCeeecCCCCCCC----CCCCCcc
Q 039355           63 PYKALLNPPKTAIFPTEYKPS----DVNDNAL   90 (122)
Q Consensus        63 P~Ka~~nP~n~aI~p~~y~~~----~~~D~~L   90 (122)
                      |.....|| | +|.+.+|.+.    +.||+.|
T Consensus       162 p~~~~~~p-N-~I~I~~~~fF~~~gD~n~~~l  191 (442)
T 3ef1_A          162 GDVWDWNP-N-LIKVVPYEFFVGIGDINSNFL  191 (442)
T ss_dssp             SGGGTTCT-T-EEECCCCCCSTTCCCSCC---
T ss_pred             HHHhCCCC-C-EEEcCCccccCCCCccccccc
Confidence            99999997 5 9999999743    5677766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	122
d1ta0a_	181	c.108.1.16 (A:) Carboxy-terminal domain RNA polyme	2e-04

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 181

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 2e-04
 Identities = 13/102 (12%), Positives = 31/102 (30%), Gaps = 14/102 (13%)

Query: 1   MDFCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAWHSILSVPVGQ---------- 50
           +    E FE  +++++   Y +   + +     G           V              
Sbjct: 64  LQRMGELFECVLFTASLAKYADPVADLLDK--WGAFRARLFRESCVFHRGNYVKDLSRLG 121

Query: 51  YSSSNTLLIDTDPYKALLNPPKTAIFPTEYKPSDVNDNALEH 92
                 L++D  P   + +P   A+    +   +++D  L  
Sbjct: 122 RDLRRVLILDNSPASYVFHPDN-AVPVASWF-DNMSDTELHD 161

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d1ta0a_	181	Carboxy-terminal domain RNA polymerase II polypept	99.65

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.9e-17  Score=122.63  Aligned_cols=80  Identities=15%  Similarity=0.199  Sum_probs=70.2

Q ss_pred             CchhhccceEEEEccCCccc----------------ccccccccccCcCceeeEEEecccccccCCCCCcceEEEeCCcc
Q 039355            1 MDFCLERFEVGIWSSAREWY----------------MNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDPY   64 (122)
Q Consensus         1 L~fc~~~F~V~VWSSa~~~n----------------vw~~~~ct~~~~~~k~~~~K~L~~vW~~g~~~~sNTlLIDDSP~   64 (122)
                      |++|.++|+|+|||+|+++|                .|.|++|+..    +...+|+|++++    ++.+|||||||+|.
T Consensus        64 L~~l~~~yei~I~Ta~~~~YA~~il~~ldp~~~~~~~~~r~~c~~~----~~~~~KdL~~l~----~~l~~vvivDd~~~  135 (181)
T d1ta0a_          64 LQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFH----RGNYVKDLSRLG----RDLRRVLILDNSPA  135 (181)
T ss_dssp             HHHHHHHSEEEEECSSCHHHHHHHHHHHCSSCCEEEEECGGGSEEE----TTEEECCGGGSC----SCGGGEEEECSCGG
T ss_pred             HHHHHhceEEEEEcCCcHHHHHHHHHHhccCCceeEEEEeeeeeec----CCcccccHhhcC----CCHHHeEEEcCChh
Confidence            57899999999999999999                7888888763    344689999995    68899999999999


Q ss_pred             hhhcCCCCeeecCCCCCCCCCCCCcc
Q 039355           65 KALLNPPKTAIFPTEYKPSDVNDNAL   90 (122)
Q Consensus        65 Ka~~nP~n~aI~p~~y~~~~~~D~~L   90 (122)
                      ++..||.| +|.+.+|.++ .+|++|
T Consensus       136 ~~~~~~~N-~I~I~~f~~~-~~D~eL  159 (181)
T d1ta0a_         136 SYVFHPDN-AVPVASWFDN-MSDTEL  159 (181)
T ss_dssp             GGTTCGGG-BCCCCCCSSC-TTCCHH
T ss_pred             hhhcCccC-eeEecCcCCC-CCcHHH
Confidence            99999986 9999999985 579998