Citrus Sinensis ID: 039391

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
VRSIKSLYLHHNFPPWYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKALNLREKRDKTL
Secondary Structure (PSIPRED)
cccEEHHHHHccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHEEEEccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHccHcHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
vrsikslylhhnfppwYQFVTAAFWKLVEEEEGNCGLWLSYIFSgaaanfvpwlilpknavsvgAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEkaaqapagtsgtfiggysvQSINHIAILSGALFGVFLNKALNLREKRDKTL
Flexible Loop (DISEMBL)
vrsikslylhhnfppwYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEkaaqapagtsGTFIGGYSVQSINHIAILSGALFGVFLNKalnlrekrdktl
Low Complexity Region (SEG)
VRSIKSLYLHHNFPPWYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNavsvgaagavfglfaISVLVKMSWDRRKvlevlildelvveKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKALNLREKRDKTL
Disordered region (IsUnstruct)
**********************************CGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKALN*********
Disordered Region (DISOPRED)
VRSIKSLYLHHNFPPWYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKALNL*E******
Disordered Region (DISEMBL)
VRSIKSLYLHHNFPPWYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKALNLREKRDKTL
Disordered Region (DISPRO)
VRSIKSLYLHHNFPPWYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKALNLREKR****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VRSIKSLYLHHNFPPWYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKALNLREKRDKTL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
225430025	222	PREDICTED: putative rhomboid protease yd	0.907	0.617	0.670	4e-49
296081887	293	unnamed protein product [Vitis vinifera]	0.907	0.467	0.670	6e-49
297812787	281	rhomboid family protein [Arabidopsis lyr	0.867	0.466	0.677	3e-47
22327066	280	rhomboid-like protein 11 [Arabidopsis th	0.867	0.467	0.671	4e-47
255551048	308	conserved hypothetical protein [Ricinus	0.907	0.444	0.639	6e-45
224141791	226	predicted protein [Populus trichocarpa]	0.867	0.579	0.638	4e-43
388504724	284	unknown [Lotus japonicus]	0.867	0.461	0.625	9e-42
359811335	281	uncharacterized protein LOC100781449 [Gl	0.854	0.459	0.618	4e-40
449437036	220	PREDICTED: putative rhomboid protease Yd	0.860	0.590	0.611	1e-39
449517251	220	PREDICTED: LOW QUALITY PROTEIN: putative	0.860	0.590	0.611	1e-39

>gi|225430025|ref|XP_002281548.1| PREDICTED: putative rhomboid protease ydcA-like [Vitis vinifera]

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 106/158 (67%), Positives = 121/158 (76%), Gaps = 21/158 (13%)

Query: 1   VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
           VR+IK+LYL+HN+P WYQFVTA F    W              +LVEEEEGN GLWLSYI
Sbjct: 38  VRAIKTLYLYHNWPAWYQFVTATFCHANWNHLSSNLFFLYIFGRLVEEEEGNFGLWLSYI 97

Query: 43  FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEK- 101
            +GA AN V WL+LP+NAVSVGA+GAVFGLFAISVLVK+SWD RK+LEVLIL + V+EK 
Sbjct: 98  LTGAGANLVSWLVLPRNAVSVGASGAVFGLFAISVLVKISWDWRKILEVLILGQFVIEKV 157

Query: 102 --AAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFL 137
             AAQA  G SGTF+GGYS+QSINHIA LSGAL GV L
Sbjct: 158 MEAAQASTGLSGTFLGGYSIQSINHIAHLSGALIGVLL 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081887|emb|CBI20892.3| unnamed protein product [Vitis vinifera]

 Score =  198 bits (504), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 106/158 (67%), Positives = 121/158 (76%), Gaps = 21/158 (13%)

Query: 1   VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
           VR+IK+LYL+HN+P WYQFVTA F    W              +LVEEEEGN GLWLSYI
Sbjct: 109 VRAIKTLYLYHNWPAWYQFVTATFCHANWNHLSSNLFFLYIFGRLVEEEEGNFGLWLSYI 168

Query: 43  FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEK- 101
            +GA AN V WL+LP+NAVSVGA+GAVFGLFAISVLVK+SWD RK+LEVLIL + V+EK 
Sbjct: 169 LTGAGANLVSWLVLPRNAVSVGASGAVFGLFAISVLVKISWDWRKILEVLILGQFVIEKV 228

Query: 102 --AAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFL 137
             AAQA  G SGTF+GGYS+QSINHIA LSGAL GV L
Sbjct: 229 MEAAQASTGLSGTFLGGYSIQSINHIAHLSGALIGVLL 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812787|ref|XP_002874277.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata] gi|297320114|gb|EFH50536.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 103/152 (67%), Positives = 115/152 (75%), Gaps = 21/152 (13%)

Query: 1   VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
           VR IKSLYL+HNFP WYQFVTA F    W              KLVEEEEGN GLWLSY+
Sbjct: 102 VRGIKSLYLYHNFPAWYQFVTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYL 161

Query: 43  FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEK- 101
           F+G  AN V WL+LP+NAVSVGA+GAVFGLFAISVLVKMSWD RK+LEVLIL + VVE+ 
Sbjct: 162 FTGVGANLVSWLVLPRNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVERV 221

Query: 102 --AAQAPAGTSGTFIGGYSVQSINHIAILSGA 131
             AAQA AG SGT  GGYS+Q++NHIA LSGA
Sbjct: 222 MEAAQASAGLSGTIYGGYSLQTVNHIAHLSGA 253

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22327066|ref|NP_680221.1| rhomboid-like protein 11 [Arabidopsis thaliana] gi|30102632|gb|AAP21234.1| At5g25752 [Arabidopsis thaliana] gi|110736074|dbj|BAF00010.1| hypothetical protein [Arabidopsis thaliana] gi|332006096|gb|AED93479.1| rhomboid-like protein 11 [Arabidopsis thaliana]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 102/152 (67%), Positives = 115/152 (75%), Gaps = 21/152 (13%)

Query: 1   VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
           VR IKSLYL+HNFP WYQFVTA F    W              KLVEEEEGN GLWLSY+
Sbjct: 103 VRGIKSLYLYHNFPAWYQFVTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYL 162

Query: 43  FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEK- 101
           F+G  AN V WL+LP+NAVSVGA+GAVFGLFAISVLVKMSWD RK+LEVLIL + V+E+ 
Sbjct: 163 FTGVGANLVSWLVLPRNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVIERV 222

Query: 102 --AAQAPAGTSGTFIGGYSVQSINHIAILSGA 131
             AAQA AG SGT  GGYS+Q++NHIA LSGA
Sbjct: 223 MEAAQASAGLSGTIYGGYSLQTVNHIAHLSGA 254

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551048|ref|XP_002516572.1| conserved hypothetical protein [Ricinus communis] gi|223544392|gb|EEF45913.1| conserved hypothetical protein [Ricinus communis]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 101/158 (63%), Positives = 115/158 (72%), Gaps = 21/158 (13%)

Query: 1   VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
           VR IKSLYL+HN P WYQF++A F    W              KLVEEEEGN  LWLSYI
Sbjct: 126 VRGIKSLYLYHNRPTWYQFISATFCHASWEHLSSNLFFLYIFGKLVEEEEGNFALWLSYI 185

Query: 43  FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEK- 101
            +G  AN V WL+LP+NAVSVGA+GAVFGLFAISVLVK++WD RK+LEVLIL + V+EK 
Sbjct: 186 LTGVGANLVSWLVLPRNAVSVGASGAVFGLFAISVLVKITWDWRKILEVLILGQFVIEKV 245

Query: 102 --AAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFL 137
             AAQA A  SGTF GGY +QS+NHIA LSGAL GV L
Sbjct: 246 MEAAQASAALSGTFRGGYPMQSVNHIAHLSGALIGVVL 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141791|ref|XP_002324247.1| predicted protein [Populus trichocarpa] gi|222865681|gb|EEF02812.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (453), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 97/152 (63%), Positives = 111/152 (73%), Gaps = 21/152 (13%)

Query: 1   VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
           VR IKSLYL+HN+P WYQFVTA F    W              KLVEEEEGN  LWLSYI
Sbjct: 43  VRHIKSLYLYHNWPAWYQFVTATFCHASWEHLSSNLFFLYIFGKLVEEEEGNFALWLSYI 102

Query: 43  FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEK- 101
            +G  AN V WL+LP+NAVSVGA+GAVFGLFAISVLVK++WD RK+LEVLIL + V+EK 
Sbjct: 103 LTGVGANLVSWLVLPRNAVSVGASGAVFGLFAISVLVKITWDWRKILEVLILGQFVIEKV 162

Query: 102 --AAQAPAGTSGTFIGGYSVQSINHIAILSGA 131
             AAQA A  +G F GGY VQ++NHIA LSGA
Sbjct: 163 MEAAQASAAMTGPFRGGYPVQTVNHIAHLSGA 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504724|gb|AFK40428.1| unknown [Lotus japonicus]

 Score =  174 bits (442), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 95/152 (62%), Positives = 107/152 (70%), Gaps = 21/152 (13%)

Query: 1   VRSIKSLYLHHNFPPWYQFVTAAF----WK--------------LVEEEEGNCGLWLSYI 42
           V  IK++YL+HN P WYQFVTA F    WK              LVEEEEGN  LWL YI
Sbjct: 113 VNGIKAMYLYHNRPSWYQFVTATFCHANWKHLSSNLFFLYISGKLVEEEEGNFALWLCYI 172

Query: 43  FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEK- 101
            +G  AN V WLILP++ VSVGA+GAVFGLF ISVLVKMSWD RK+LEVLIL + VVEK 
Sbjct: 173 LTGVGANLVSWLILPRDIVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVVEKV 232

Query: 102 --AAQAPAGTSGTFIGGYSVQSINHIAILSGA 131
             AAQA    +GTF GGYS+QS+NHIA LSGA
Sbjct: 233 MEAAQASTSLTGTFRGGYSLQSVNHIAHLSGA 264

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359811335|ref|NP_001240965.1| uncharacterized protein LOC100781449 [Glycine max] gi|255635279|gb|ACU17993.1| unknown [Glycine max]

 Score =  169 bits (427), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 94/152 (61%), Positives = 108/152 (71%), Gaps = 23/152 (15%)

Query: 1   VRSIKSLYLHHNFPPWYQFVTAAF----WK--------------LVEEEEGNCGLWLSYI 42
           V  IK+LYL+HN+P WYQFVTA F    WK              LVEEEEGN  LWLSYI
Sbjct: 112 VNGIKALYLYHNWPSWYQFVTATFCHANWKHLSSNLFFLYIFGKLVEEEEGNFALWLSYI 171

Query: 43  FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEK- 101
            +G  AN V WL+LP+N VSVGA+GAVFGLF+ISVLVKMSWD RK+LEVLIL + V+EK 
Sbjct: 172 LTGVGANLVSWLVLPRNTVSVGASGAVFGLFSISVLVKMSWDWRKILEVLILGQFVIEKV 231

Query: 102 --AAQAPAGTSGTFIGGYSVQSINHIAILSGA 131
             AAQA    SG   GGY++QS+NHIA LSGA
Sbjct: 232 MEAAQASTSLSGR--GGYALQSVNHIAHLSGA 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437036|ref|XP_004136298.1| PREDICTED: putative rhomboid protease YdcA-like [Cucumis sativus]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 93/152 (61%), Positives = 108/152 (71%), Gaps = 22/152 (14%)

Query: 1   VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
           VR+I +LYL+H+ P WYQF TA F    W              KLVEEEEGN  LWLSYI
Sbjct: 40  VRNIGALYLYHSRPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYI 99

Query: 43  FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEK- 101
            +G  AN V WLILP+NAVSVGA+GAVFGLF ISVLVKMSWD RK+LEVLIL + V+EK 
Sbjct: 100 LTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKV 159

Query: 102 --AAQAPAGTSGTFIGGYSVQSINHIAILSGA 131
             AAQA    SG+F  GYS+Q++NH+A LSGA
Sbjct: 160 MEAAQASTALSGSF-RGYSLQNVNHVAHLSGA 190

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517251|ref|XP_004165659.1| PREDICTED: LOW QUALITY PROTEIN: putative rhomboid protease YdcA-like [Cucumis sativus]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 93/152 (61%), Positives = 108/152 (71%), Gaps = 22/152 (14%)

Query: 1   VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
           VR+I +LYL+H+ P WYQF TA F    W              KLVEEEEGN  LWLSYI
Sbjct: 40  VRNIGALYLYHSRPAWYQFFTATFCHANWNHLSSNXFFLYIFGKLVEEEEGNFALWLSYI 99

Query: 43  FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEK- 101
            +G  AN V WLILP+NAVSVGA+GAVFGLF ISVLVKMSWD RK+LEVLIL + V+EK 
Sbjct: 100 LTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKV 159

Query: 102 --AAQAPAGTSGTFIGGYSVQSINHIAILSGA 131
             AAQA    SG+F  GYS+Q++NH+A LSGA
Sbjct: 160 MEAAQASTALSGSF-RGYSLQNVNHVAHLSGA 190

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
TAIR|locus:504956416	280	RBL11 "rhomboid-like protein 1	0.788	0.425	0.532	1.5e-26
TAIR|locus:2179454	102	AT5G25640 [Arabidopsis thalian	0.397	0.588	0.5	4.5e-11

TAIR|locus:504956416 RBL11 "rhomboid-like protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 65/122 (53%), Positives = 73/122 (59%)

Query:    19 FVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNXXXXXXXXXXXXXXXISVL 78
             F    F KLVEEEEGN GLWLSY+F+G  AN V WL+LP+N               ISVL
Sbjct:   139 FFLYIFGKLVEEEEGNFGLWLSYLFTGVGANLVSWLVLPRNAVSVGASGAVFGLFAISVL 198

Query:    79 VKMSWDRRKXXXXXXXXXXXXXK---AAQAPAGTSGTFIGGYSVQSINHIAILSGALFGV 135
             VKMSWD RK             +   AAQA AG SGT  GGYS+Q++NHIA LSGAL GV
Sbjct:   199 VKMSWDWRKILEVLILGQFVIERVMEAAQASAGLSGTIYGGYSLQTVNHIAHLSGALVGV 258

Query:   136 FL 137
              L
Sbjct:   259 VL 260

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0080140 "regulation of jasmonic acid metabolic process" evidence=IMP

TAIR|locus:2179454 AT5G25640 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 31/62 (50%), Positives = 36/62 (58%)

Query:    26 KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNXXXXXXXXXXXXXXXISVLVKMS--W 83
             K+VEEE+GN GLWLSY+F+G  AN V W  LP N               ISVLVKMS  W
Sbjct:    10 KIVEEEKGNFGLWLSYLFTGVGANMVSWFTLPPNSFFSGASGAVFGLFVISVLVKMSRGW 69

Query:    84 DR 85
              +
Sbjct:    70 SK 71


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.437    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      151       123   0.00091  102 3  11 22  0.48    30
                                                     29  0.50    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  575 (61 KB)
  Total size of DFA:  139 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.77u 0.09s 9.86t   Elapsed:  00:00:00
  Total cpu time:  9.77u 0.09s 9.86t   Elapsed:  00:00:00
  Start:  Fri May 10 23:47:20 2013   End:  Fri May 10 23:47:20 2013

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00032471001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (293 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00021327001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (388 aa)			•				•		0.508
	GSVIVG00001974001	SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_124, whole genome shot [...] (271 aa)			•				•		0.505
	GSVIVG00024303001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (391 aa)			•				•		0.501
	GSVIVG00001124001	SubName- Full=Chromosome chr2 scaffold_112, whole genome shotgun sequence; (328 aa)			•				•		0.495
	GSVIVG00007376001	SubName- Full=Chromosome chr16 scaffold_189, whole genome shotgun sequence; (325 aa)			•				•		0.487

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	151
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	5e-04
COG0705	228	COG0705, COG0705, Membrane associated serine prote	0.003

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 9/97 (9%)

Query: 41  YIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVE 100
           Y+ SG A + + +L  P ++ SVGA+GA+FGL     L+ +    R +L       L++ 
Sbjct: 50  YLLSGLAGSLLSYLFSPASSPSVGASGAIFGLLG--ALLVLLPRNRILLFNFPGALLLL- 106

Query: 101 KAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFL 137
                       F+ G     I++ A L G + G+ L
Sbjct: 107 -LGIILLNLLLGFLPG-----ISNFAHLGGLIAGLLL 137

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 12/121 (9%)

Query: 22  AAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN-AVSVGAAGAVFGLFAISVLVK 80
             F   +E   G     L Y+ SG  A     L  PK  A S+GA+GA+FGL   +  + 
Sbjct: 92  WVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLG-AYFLL 150

Query: 81  MSWDRRKVLEVLILDELVVEKAAQAPAGT----SGTFIGGYSVQSINHIAILSGALFGVF 136
             + R      ++L  L + + A          S     G    S+   A L G + G+ 
Sbjct: 151 FPFAR------ILLLFLSLPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLL 204

Query: 137 L 137
           L
Sbjct: 205 L 205

Length = 228

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
PTZ00101	278	rhomboid-1 protease; Provisional	99.92
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.89
COG0705	228	Membrane associated serine protease [Amino acid tr	99.83
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.79
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	99.78
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	99.54
KOG2632	258	consensus Rhomboid family proteins [Function unkno	98.72
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	97.5
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	97.11
KOG2980	310	consensus Integral membrane protease of the rhombo	97.08
KOG4463	323	consensus Uncharacterized conserved protein [Funct	93.39
KOG0858	239	consensus Predicted membrane protein [Function unk	93.12
KOG2890	326	consensus Predicted membrane protein [Function unk	91.41

>PTZ00101 rhomboid-1 protease; Provisional

Probab=99.92  E-value=1.6e-24  Score=170.08  Aligned_cols=130  Identities=16%  Similarity=0.227  Sum_probs=91.8

Q ss_pred             cCCCcchhhhhHh------------------HHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCcceechhHHHHHHH
Q 039391           12 NFPPWYQFVTAAF------------------WKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLF   73 (151)
Q Consensus        12 ~~~e~wrl~T~~f------------------G~~le~~~G~~~~~~lyl~sgi~g~l~~~~~~~~~~~~vGaSGai~Gl~   73 (151)
                      +++||||++|++|                  |..+|+.+|++|+..+|++||+.|++++..+.+ ...++||||++||++
T Consensus        98 ~~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~-~~~svGASgAifGLi  176 (278)
T PTZ00101         98 KQGEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTY-CPIKVGASTSGMGLL  176 (278)
T ss_pred             hcCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHcc-CCcEEehhHHHHHHH
Confidence            3599999999999                  999999999999999999999999999987765 567999999999999


Q ss_pred             HHHHHH-HhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhHHHHHHHHHHHHHHHHHhhccccccc
Q 039391           74 AISVLV-KMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKALNLREKRDK  149 (151)
Q Consensus        74 g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~l~~~~~~~~  149 (151)
                      |+.... ...+...+..... ....+.....    .+  ........+++|+.||+||+++|++++..+.++.+++.
T Consensus       177 Ga~~~~lil~w~~~~~~~~~-~~~~i~~~li----~~--~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~~l~~~~  246 (278)
T PTZ00101        177 GIVTSELILLWHVIRHRERV-VFNIIFFSLI----SF--FYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQMENKP  246 (278)
T ss_pred             HHHHHHHHHHHHhhccHHHH-HHHHHHHHHH----HH--HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            997521 1122111100111 0101111000    00  11223345899999999999999999999877655443

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.89  E-value=1.3e-22  Score=159.44  Aligned_cols=127  Identities=17%  Similarity=0.091  Sum_probs=91.6

Q ss_pred             cCCCcchhhhhHh------------------HHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCcceechhHHHHHHH
Q 039391           12 NFPPWYQFVTAAF------------------WKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLF   73 (151)
Q Consensus        12 ~~~e~wrl~T~~f------------------G~~le~~~G~~~~~~lyl~sgi~g~l~~~~~~~~~~~~vGaSGai~Gl~   73 (151)
                      +++||||++|++|                  |+.+|+.+|+++++.+|++|++.||+.++.+.+  ...+|+||++||++
T Consensus       131 ~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~~~~l~l~l~s~i~~~~~~~~~~~--~~~gGaSGvVygL~  208 (276)
T PRK10907        131 LKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGWVQSKFSG--PWFGGLSGVVYALM  208 (276)
T ss_pred             ccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHcc--chhhHHHHHHHHHH
Confidence            4689999999999                  999999999999999999999999999987764  45789999999999


Q ss_pred             HHHHHHHhhhhHHHH-HHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhHHHHHHHHHHHHHHHHHhhccccccc
Q 039391           74 AISVLVKMSWDRRKV-LEVLILDELVVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKALNLREKRDK  149 (151)
Q Consensus        74 g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~l~~~~~~~~  149 (151)
                      |+..+...+.+.+.. .+.   . ++...+++   ..++  ..+...++||++||++|+++|+++++...+++||++
T Consensus       209 g~~~~~~~~~p~~~~~lp~---~-~~~f~llw---l~~g--~~~~~g~~Ian~AHlgGli~Gll~g~~~~~~~~~~~  276 (276)
T PRK10907        209 GYVWLRGERDPQSGIYLPR---G-LIAFALLW---LVAG--YFDLFGMSIANAAHVAGLAVGLAMAFWDTRNARKRK  276 (276)
T ss_pred             HHHHHHhccccccchhhhH---H-HHHHHHHH---HHHH--HHHccCcccHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence            986532222111111 111   1 11111111   1111  123345789999999999999999998877766553

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.83  E-value=4.1e-20  Score=141.51  Aligned_cols=125  Identities=27%  Similarity=0.334  Sum_probs=89.5

Q ss_pred             CcchhhhhHh------------------HHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCC-cceechhHHHHHHHHH
Q 039391           15 PWYQFVTAAF------------------WKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN-AVSVGAAGAVFGLFAI   75 (151)
Q Consensus        15 e~wrl~T~~f------------------G~~le~~~G~~~~~~lyl~sgi~g~l~~~~~~~~~-~~~vGaSGai~Gl~g~   75 (151)
                      ||||++|++|                  |..+|+..|+.+|+.+|+.+|+.+++.++.+.|.. .+++||||+++|++|+
T Consensus        67 ~~w~lit~~FlH~~~~Hll~N~~~l~~fg~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga  146 (228)
T COG0705          67 QLWRLITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGA  146 (228)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHH
Confidence            8999999999                  99999999999999999999999999998888754 5899999999999999


Q ss_pred             HHHHHhhhhHHHHHHH--HHHHHHHHHHHhhhhhhhhhhhcccccC--CchhHHHHHHHHHHHHHHHHHhhcccc
Q 039391           76 SVLVKMSWDRRKVLEV--LILDELVVEKAAQAPAGTSGTFIGGYSV--QSINHIAILSGALFGVFLNKALNLREK  146 (151)
Q Consensus        76 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~aHlgG~l~G~l~~~~l~~~~~  146 (151)
                      ++..  .+..+.....  .... ..+......   .. .+.....+  ++|+++||++|+++|.+++....++++
T Consensus       147 ~~~~--~~~~~~~~~~~~~~~~-~~~~i~~~~---~~-~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~~~  214 (228)
T COG0705         147 YFLL--FPFARILLLFLSLPRP-ALILILIWL---LY-SLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRKLR  214 (228)
T ss_pred             HHHH--ccccchhhhhccCchh-HHHHHHHHH---HH-HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            8732  2332222111  1001 111101111   11 11222222  479999999999999999998877655

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.79  E-value=3.7e-19  Score=126.70  Aligned_cols=125  Identities=25%  Similarity=0.385  Sum_probs=83.9

Q ss_pred             cCCCcchhhhhHh------------------HHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCcceechhHHHHHHH
Q 039391           12 NFPPWYQFVTAAF------------------WKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLF   73 (151)
Q Consensus        12 ~~~e~wrl~T~~f------------------G~~le~~~G~~~~~~lyl~sgi~g~l~~~~~~~~~~~~vGaSGai~Gl~   73 (151)
                      +++||||++|+.|                  |..+|+.+|++++..+|+.+++.+++...+..++..+.+|+||+++|++
T Consensus         2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~   81 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLL   81 (145)
T ss_dssp             GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHH
T ss_pred             CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHH
Confidence            4699999999999                  9999999999999999999999999999888765458999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhh-hhcccccCCchhHHHHHHHHHHHHHHHHHhhcccc
Q 039391           74 AISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSG-TFIGGYSVQSINHIAILSGALFGVFLNKALNLREK  146 (151)
Q Consensus        74 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~aHlgG~l~G~l~~~~l~~~~~  146 (151)
                      ++........+.+.....   .      ........+. ...... .+++++.+|++|+++|++++..+.|+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~~~~~~~~~-~~~~~~~~hl~G~~~G~~~~~~~~~~~~  145 (145)
T PF01694_consen   82 GAFLFLYPQNKKRLRFIY---L------ALVVPIIVLVIILLLGF-IPNISFLGHLGGFLAGLLYGFLILRRPQ  145 (145)
T ss_dssp             HHHHHHHHCCCCCS---H---C------CCCCCCCCCCHHHCTSS-SSTTTHHHHHHHHHHHHHHHHHHCH---
T ss_pred             HHHHHHHhhccchhhcch---H------HHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            997643322211111000   0      0000000010 122222 6899999999999999999999887753

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.78  E-value=5.4e-20  Score=146.03  Aligned_cols=123  Identities=22%  Similarity=0.321  Sum_probs=90.4

Q ss_pred             ccCCCcchhhhhHh------------------HHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCcceechhHHHHHH
Q 039391           11 HNFPPWYQFVTAAF------------------WKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGL   72 (151)
Q Consensus        11 ~~~~e~wrl~T~~f------------------G~~le~~~G~~~~~~lyl~sgi~g~l~~~~~~~~~~~~vGaSGai~Gl   72 (151)
                      .+.+|+||++|+||                  |..+|+.+|.+|+-++|++++++|++++.++.+ +..+|||||++||+
T Consensus       114 ~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~-~~~sVGASggvfaL  192 (316)
T KOG2289|consen  114 VHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDP-NSISVGASGGVFAL  192 (316)
T ss_pred             hhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhcc-CCceecccHHHHHH
Confidence            34599999999999                  999999999999999999999999999998875 78899999999999


Q ss_pred             HHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHhhhhhhhhhhhcccccCCchhHHHHHHHHHHHHHHHHHhhcc
Q 039391           73 FAISVLVKMSWDRRKVLE-VLILDELVVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKALNLR  144 (151)
Q Consensus        73 ~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~l~~~  144 (151)
                      +|+.+. .+..|+..+-. ...+..++++..       + .+-.+. .+.+|+++|+||+++|...++++..+
T Consensus       193 lgA~Ls-~l~~Nw~~m~~~~~~l~~ll~Ii~-------i-~l~~G~-~~~~~~~~h~gg~~~G~~~~fil~~~  255 (316)
T KOG2289|consen  193 LGAHLS-NLLTNWTIMKNKFAALRTLLIIIF-------I-NLDLGF-APYVDNFAHIGGLLAGFLLGFVLHIG  255 (316)
T ss_pred             HHHHHH-HHHhhHHHhcchHHHHHHHHHHHH-------H-HHhhcc-ccceeccccccccCCCcchhHHhhhc
Confidence            999862 33333332210 100111111100       1 122343 37789999999999999999877543

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.54  E-value=5.5e-15  Score=121.06  Aligned_cols=133  Identities=21%  Similarity=0.306  Sum_probs=98.0

Q ss_pred             CCccccccccccCCCcchhhhhHh------------------HHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCcce
Q 039391            1 VRSIKSLYLHHNFPPWYQFVTAAF------------------WKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVS   62 (151)
Q Consensus         1 ~~~~~~~~~~~~~~e~wrl~T~~f------------------G~~le~~~G~~~~~~lyl~sgi~g~l~~~~~~~~~~~~   62 (151)
                      |=||-+++-..++.|+||+.|+.|                  -+.+|+..|+.|..++|++||+.||+++..+.| ..+.
T Consensus       436 VCGllPFln~e~PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFlp-Y~~e  514 (652)
T KOG2290|consen  436 VCGLLPFLNPEVPDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFLP-YRAE  514 (652)
T ss_pred             ccccccccCCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheeeec-cccc
Confidence            347777888889999999999999                  567899999999999999999999999998886 8899


Q ss_pred             echhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhHHHHHHHHHHHHHHHHHhh
Q 039391           63 VGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKALN  142 (151)
Q Consensus        63 vGaSGai~Gl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~l~  142 (151)
                      ||.||+-+|++++.++ .+. +.+.+++.- -..+.  .+   +..++ ++..++ -|-||++||+.|++.|++.+.++.
T Consensus       515 VgPa~sQ~Gila~l~v-El~-qs~~il~~~-w~a~~--~L---ia~~L-~L~iGl-iPWiDN~aHlfG~i~GLl~s~~~~  584 (652)
T KOG2290|consen  515 VGPAGSQFGILACLFV-ELF-QSWQILERP-WRAFF--HL---IATLL-VLCIGL-IPWIDNWAHLFGTIFGLLTSIIFL  584 (652)
T ss_pred             cCCcccccchHHHHHH-HHH-hhhHhhhhH-HHHHH--HH---HHHHH-HHHhcc-ccchhhHHHHHHHHHHHHHHHHhh
Confidence            9999999999998763 222 222222211 01000  00   00111 122354 489999999999999999998876


Q ss_pred             cc
Q 039391          143 LR  144 (151)
Q Consensus       143 ~~  144 (151)
                      +-
T Consensus       585 PY  586 (652)
T KOG2290|consen  585 PY  586 (652)
T ss_pred             cc
Confidence            53

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=98.72  E-value=2.8e-08  Score=76.94  Aligned_cols=120  Identities=16%  Similarity=0.175  Sum_probs=80.5

Q ss_pred             cccCCCcchhhhhHh------------------HHHHHHhhc-hHHHHHHHHHHHHHHHHHHHhhc-----CC---Ccce
Q 039391           10 HHNFPPWYQFVTAAF------------------WKLVEEEEG-NCGLWLSYIFSGAAANFVPWLIL-----PK---NAVS   62 (151)
Q Consensus        10 ~~~~~e~wrl~T~~f------------------G~~le~~~G-~~~~~~lyl~sgi~g~l~~~~~~-----~~---~~~~   62 (151)
                      ..++.|.||++||.+                  |...|+.+| +.++.....+.++..+++.....     .+   +...
T Consensus        47 ~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a  126 (258)
T KOG2632|consen   47 LLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGA  126 (258)
T ss_pred             HhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccc
Confidence            345689999999998                  899999999 88888888888888888665443     11   2456


Q ss_pred             echhHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhHHHHHHHHHHHHHHHH
Q 039391           63 VGAAGAVFGLFAISVLVKMSWDRR-KVLEVLILDELVVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFLNK  139 (151)
Q Consensus        63 vGaSGai~Gl~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~  139 (151)
                      +|-||..|++++.....  .+.++ .......+.....      +...+  +...+..|+.|..+|++|+++|..+++
T Consensus       127 ~G~s~v~Fam~~~~~~~--sp~r~~~~fg~~siP~~l~------Pw~lL--i~~~~lvp~aSFlghl~GllvG~ay~~  194 (258)
T KOG2632|consen  127 IGFSGVLFAMMAVLEVQ--SPVRSRSVFGLFSIPIVLA------PWALL--IATQILVPQASFLGHLCGLLVGYAYAF  194 (258)
T ss_pred             ccccHHHHHHHHHHhhc--CcccchhhcccccccHHHH------HHHHH--HHHHHHccCchHHHHHHHHHHHHHHHH
Confidence            99999999999985421  22222 1211110000000      11111  122234689999999999999999998

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=97.50  E-value=0.00019  Score=48.35  Aligned_cols=59  Identities=17%  Similarity=0.254  Sum_probs=45.1

Q ss_pred             CcchhhhhHh------------------HHHHHHhhchHHHHHHHHHHHHHHHHHHHhhc--------CCC---cceech
Q 039391           15 PWYQFVTAAF------------------WKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL--------PKN---AVSVGA   65 (151)
Q Consensus        15 e~wrl~T~~f------------------G~~le~~~G~~~~~~lyl~sgi~g~l~~~~~~--------~~~---~~~vGa   65 (151)
                      .+|+++|+.|                  |+.+|+.+|+++++....+....+|+......        ++.   .+.-|.
T Consensus         7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~i~~~~~~l~~~i~G~   86 (99)
T PF08551_consen    7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLLYLLLYAITGNESYLFVPISGF   86 (99)
T ss_pred             ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCceeEEEecCc
Confidence            6899999999                  99999999999999999999999998654332        222   334566


Q ss_pred             hHHHHHHH
Q 039391           66 AGAVFGLF   73 (151)
Q Consensus        66 SGai~Gl~   73 (151)
                      +|.+.|++
T Consensus        87 ~~~~~g~l   94 (99)
T PF08551_consen   87 MGVLAGFL   94 (99)
T ss_pred             HHhHhheE
Confidence            66666554

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=97.11  E-value=0.00027  Score=53.16  Aligned_cols=45  Identities=16%  Similarity=0.147  Sum_probs=32.0

Q ss_pred             ccCCCcchhhhhHh-------------------HHHHHHh-hc-h-HHHHHHHHHHHHHHHHHHHhh
Q 039391           11 HNFPPWYQFVTAAF-------------------WKLVEEE-EG-N-CGLWLSYIFSGAAANFVPWLI   55 (151)
Q Consensus        11 ~~~~e~wrl~T~~f-------------------G~~le~~-~G-~-~~~~~lyl~sgi~g~l~~~~~   55 (151)
                      .++.|+||++|+.|                   ++.+|+. +. + .+|+...+.+++.-.+.+.+.
T Consensus        37 ~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~~ady~~~ll~~~~~i~~~~~~~  103 (197)
T PF04511_consen   37 FKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGRSADYLWFLLFGASLILILSLLI  103 (197)
T ss_pred             hhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            45699999999998                   7899987 33 2 577777666666655555433

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]

Probab=97.08  E-value=0.00017  Score=57.18  Aligned_cols=110  Identities=25%  Similarity=0.304  Sum_probs=56.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhh-cC--CCcceechhHHHHHHHHHHHHHHhhhhHHHHHHH---HHHHHH-HHHHHhhh
Q 039391           33 GNCGLWLSYIFSGAAANFVPWLI-LP--KNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEV---LILDEL-VVEKAAQA  105 (151)
Q Consensus        33 G~~~~~~lyl~sgi~g~l~~~~~-~~--~~~~~vGaSGai~Gl~g~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~  105 (151)
                      |...+..+|+.++..|....+.- .+  +..+..||||+++++.+..++.  .++....+..   ...+.. .+..++. 
T Consensus       191 ~~~~~~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~l--fP~~~~~i~f~~~v~~ga~~~~~~i~~-  267 (310)
T KOG2980|consen  191 GFSSFFALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCTL--FPKTTLYILFVFPVPAGAGLAFKAIAA-  267 (310)
T ss_pred             chhhcccceeccccccceeEeeccccccccccccccchHHHHHHHHHhhc--CcCcceeEEEeecccccchhHHHHHHH-
Confidence            44555566664444443333211 01  2467899999999999998743  3333221100   000001 1110100 


Q ss_pred             hhhhhhhhcccccCCchhHHHHHHHHHHHHHHHHHh-hccccccc
Q 039391          106 PAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKAL-NLREKRDK  149 (151)
Q Consensus       106 ~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~l-~~~~~~~~  149 (151)
                       +.+.+ +.  +....-|+.||++|-+.|...+..+ .+-+|+|+
T Consensus       268 -~~~a~-~~--l~~~~~n~~Ah~~gsl~Gv~va~~~~~ri~kgR~  308 (310)
T KOG2980|consen  268 -YDFAG-LI--LGWGFFNHAAHLSGSLFGVVVATYLWARIRKGRF  308 (310)
T ss_pred             -hhhcc-ee--eccccchhHhhhcchHHHHHHHHHHHHHHHcCcc
Confidence             00111 11  1245677889999999999999776 44444443

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.39  E-value=0.028  Score=44.16  Aligned_cols=43  Identities=14%  Similarity=0.409  Sum_probs=37.0

Q ss_pred             CCCcchhhhhHh-----------------HHHHHHhhchHHHHHHHHHHHHHHHHHHHhh
Q 039391           13 FPPWYQFVTAAF-----------------WKLVEEEEGNCGLWLSYIFSGAAANFVPWLI   55 (151)
Q Consensus        13 ~~e~wrl~T~~f-----------------G~~le~~~G~~~~~~lyl~sgi~g~l~~~~~   55 (151)
                      ..||||++-..|                 -+.+||.+|+-||..+.+.+++.+-+..+.+
T Consensus        48 y~qywrlL~~qF~~~n~~e~~~~l~I~Y~fR~~ERlLGShky~~fiv~s~~~~~l~~~il  107 (323)
T KOG4463|consen   48 YFQYWRLLMSQFAFSNTPELMFGLYILYYFRVFERLLGSHKYSVFIVFSGTVSLLLEVIL  107 (323)
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccccceeehhHHHHHHHHHHHHH
Confidence            379999999998                 5789999999999999999999988866533

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=93.12  E-value=0.09  Score=40.66  Aligned_cols=45  Identities=11%  Similarity=0.181  Sum_probs=33.2

Q ss_pred             ccccCCCcchhhhhHh-------------------HHHHHHhh---chHHHHHHHHHHHHHHHHHHH
Q 039391            9 LHHNFPPWYQFVTAAF-------------------WKLVEEEE---GNCGLWLSYIFSGAAANFVPW   53 (151)
Q Consensus         9 ~~~~~~e~wrl~T~~f-------------------G~~le~~~---G~~~~~~lyl~sgi~g~l~~~   53 (151)
                      ++.++.|+||++|+.+                   .+.+|+-.   -+.+|+...+++++.-.+.+.
T Consensus        46 Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f~~rtadf~~mllf~~~l~~~~~~  112 (239)
T KOG0858|consen   46 LVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSFRGRTADFLYMLLFGAVLLTLTGL  112 (239)
T ss_pred             HHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            3456799999999997                   67888643   247888888888877665443

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=91.41  E-value=0.2  Score=40.11  Aligned_cols=64  Identities=17%  Similarity=0.235  Sum_probs=47.0

Q ss_pred             CCcchhhhhHh------------------HHHHHHhhchHHHHHHHHHHHHHHHHH-------HHhhc-CC---Ccceec
Q 039391           14 PPWYQFVTAAF------------------WKLVEEEEGNCGLWLSYIFSGAAANFV-------PWLIL-PK---NAVSVG   64 (151)
Q Consensus        14 ~e~wrl~T~~f------------------G~~le~~~G~~~~~~lyl~sgi~g~l~-------~~~~~-~~---~~~~vG   64 (151)
                      .+.|+++|+.|                  |+.+|+.+|+..++..|.+.-..-++.       .|.+. ++   ..+-.|
T Consensus        65 ~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G  144 (326)
T KOG2890|consen   65 FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHG  144 (326)
T ss_pred             hhhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEecc
Confidence            47899999999                  999999999999988887655444432       22222 21   245789


Q ss_pred             hhHHHHHHHHHHH
Q 039391           65 AAGAVFGLFAISV   77 (151)
Q Consensus        65 aSGai~Gl~g~~~   77 (151)
                      .-|..-|++-++-
T Consensus       145 ~~gilaGilVa~k  157 (326)
T KOG2890|consen  145 TTGILAGILVAWK  157 (326)
T ss_pred             chHHHHHHHHHHH
Confidence            9999999998853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	151
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	1e-04

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 19/158 (12%), Positives = 50/158 (31%), Gaps = 36/158 (22%)

Query: 16  WYQFVTAAF---------------WKL---VEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
            +++++                  +     +E   G+  L + Y+ + A   +V   +  
Sbjct: 50  VWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSG 109

Query: 58  KNAVSVGAAGAVFGLF-AISVLVKMSWDRRKV---LEVLILDELVVEKAAQAPAGTSGTF 113
                 G +G V+ +   + +  K++     +      ++L  + +             F
Sbjct: 110 --PAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIAL------------GF 155

Query: 114 IGGYSVQSINHIAILSGALFGVFLNKALNLREKRDKTL 151
           I       + + A +SG + G+      +   K    L
Sbjct: 156 ISPLFGVEMGNAAHISGLIVGLIWGFIDSKLRKNSLEL 193

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.89
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.88

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.89  E-value=2.4e-22  Score=148.25  Aligned_cols=122  Identities=17%  Similarity=0.105  Sum_probs=86.9

Q ss_pred             cCCCcchhhhhHh------------------HHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCcceechhHHHHHHH
Q 039391           12 NFPPWYQFVTAAF------------------WKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLF   73 (151)
Q Consensus        12 ~~~e~wrl~T~~f------------------G~~le~~~G~~~~~~lyl~sgi~g~l~~~~~~~~~~~~vGaSGai~Gl~   73 (151)
                      +++||||++|++|                  |+.+|+.+|++||+.+|+.+++.+++.++++.|+  .++||||+++|++
T Consensus        41 ~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~--~~vGaSGai~gl~  118 (181)
T 2xov_A           41 LKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGP--WFGGLSGVVYALM  118 (181)
T ss_dssp             GTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCS--CCCCSHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCC--CceeHHHHHHHHH
Confidence            5589999999999                  9999999999999999999999999999888764  3899999999999


Q ss_pred             HHHHHHH-hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhHHHHHHHHHHHHHHHHHhhcc
Q 039391           74 AISVLVK-MSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKALNLR  144 (151)
Q Consensus        74 g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~l~~~  144 (151)
                      ++.+... ..++.+...+.. ...+....      ...+ +. ....+++|++||++|+++|++++..++|+
T Consensus       119 g~~~~~~~~~p~~~~~l~~~-~~~~~~~~------~~~~-~~-~~~~~~v~~~aHlgG~l~G~l~~~~~~~~  181 (181)
T 2xov_A          119 GYVWLRGERDPQSGIYLQRG-LIIFALIW------IVAG-WF-DLFGMSMANGAHIAGLAVGLAMAFVDSLN  181 (181)
T ss_dssp             HHHHHHHHHCGGGSCCCCHH-HHHHHHHH------HHHH-HT-TSSCCSSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhCcCceeeeHHH-HHHHHHHH------HHHH-HH-HhccccchHHHHHHHHHHHHHHHHHHhcC
Confidence            9865321 122211000000 00011100      1111 11 11247999999999999999999988764

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.88  E-value=3.7e-23  Score=154.40  Aligned_cols=126  Identities=13%  Similarity=0.199  Sum_probs=87.3

Q ss_pred             cCCCcchhhhhHh------------------HHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCcceechhHHHHHHH
Q 039391           12 NFPPWYQFVTAAF------------------WKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLF   73 (151)
Q Consensus        12 ~~~e~wrl~T~~f------------------G~~le~~~G~~~~~~lyl~sgi~g~l~~~~~~~~~~~~vGaSGai~Gl~   73 (151)
                      +++||||++|++|                  |+.+|+.+|++||+.+|+.+++.+++.++++.|+.  ++||||++||++
T Consensus        46 ~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~--~vGaSGai~gl~  123 (196)
T 2nr9_A           46 QDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA--FFGLSGVVYAVL  123 (196)
T ss_dssp             GGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC--CCCSHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHhcCCC--eeeHHHHHHHHH
Confidence            4589999999999                  99999999999999999999999999998887643  899999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhHHHHHHHHHHHHHHHHHhhccccc
Q 039391           74 AISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKALNLREKR  147 (151)
Q Consensus        74 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~l~~~~~~  147 (151)
                      ++.+.....  .+.... .... ......   .....+. ......+++|++||++|+++|++++..+.+++|+
T Consensus       124 g~~~~~~~~--~~~~~~-~~~~-~~~~~~---~~~~~~~-~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~~~~~  189 (196)
T 2nr9_A          124 GYVFIRDKL--NHHLFD-LPEG-FFTMLL---VGIALGF-ISPLFGVEMGNAAHISGLIVGLIWGFIDSKLRKN  189 (196)
T ss_dssp             HHHHHHHHS--STTSCC-CCCS-STTTTT---TTTTHHH-HSCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh--cchhhc-chHH-HHHHHH---HHHHHHH-HHhccCCCccHHHHHHHHHHHHHHHHHHHhcccc
Confidence            986532111  111000 0000 000000   0011111 1111345899999999999999999987665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	151
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.88
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.83

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.88  E-value=7.4e-24  Score=155.34  Aligned_cols=131  Identities=14%  Similarity=0.196  Sum_probs=92.8

Q ss_pred             cccCCCcchhhhhHh------------------HHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCcceechhHHHHH
Q 039391           10 HHNFPPWYQFVTAAF------------------WKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFG   71 (151)
Q Consensus        10 ~~~~~e~wrl~T~~f------------------G~~le~~~G~~~~~~lyl~sgi~g~l~~~~~~~~~~~~vGaSGai~G   71 (151)
                      ..+++||||++|+.|                  |..+|+.+|+++++.+|+.+++.+++.+....+  .+.+||||+++|
T Consensus        41 ~~~~~~~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~~E~~~G~~~~~~~~~~~~~~~~l~~~~~~~--~~~vGaSG~v~g  118 (189)
T d2nr9a1          41 EEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSG--PAFFGLSGVVYA  118 (189)
T ss_dssp             GGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC--SCCCCSHHHHHH
T ss_pred             ccccCchHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC--CCcccchHHHHH
Confidence            445699999999999                  999999999999999999999999999877664  467999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhHHHHHHHHHHHHHHHHHhhcccccccC
Q 039391           72 LFAISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKALNLREKRDKT  150 (151)
Q Consensus        72 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~l~~~~~~~~~  150 (151)
                      ++++.+......+........... .++      ....++ .......+++|++||++|+++|++++++.+|++||+.|
T Consensus       119 l~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~-~~~~~~~~~v~~~aHl~G~l~G~~~g~~~~~~~k~~~~  189 (189)
T d2nr9a1         119 VLGYVFIRDKLNHHLFDLPEGFFT-MLL------VGIALG-FISPLFGVEMGNAAHISGLIVGLIWGFIDSKLRKNSLE  189 (189)
T ss_dssp             HHHHHHHHHHSSTTSCCCCCSSTT-TTT------TTTTHH-HHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhHhccHHHHHH-HHH------HHHHHH-HHHhccCCChHHHHHHHHHHHHHHHHHHHHcccccccC
Confidence            998865322111110000000000 000      001111 22333467999999999999999999999887777643

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.4e-20  Score=136.48  Aligned_cols=121  Identities=15%  Similarity=0.028  Sum_probs=87.0

Q ss_pred             cccCCCcchhhhhHh------------------HHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCcceechhHHHHH
Q 039391           10 HHNFPPWYQFVTAAF------------------WKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFG   71 (151)
Q Consensus        10 ~~~~~e~wrl~T~~f------------------G~~le~~~G~~~~~~lyl~sgi~g~l~~~~~~~~~~~~vGaSGai~G   71 (151)
                      ..+++||||++|++|                  |+.+|+.+|++|++.+|+.+++.|++.+..+.+  ....|+||+++|
T Consensus        39 ~~~~g~~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~lE~~~G~~~~~~~~~~~~~~g~l~~~~~~~--~~~~G~sg~i~~  116 (180)
T d3b45a1          39 PTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSG--PWFGGLSGVVYA  116 (180)
T ss_dssp             GGGTTCGGGGTGGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC--SCCCCSHHHHHH
T ss_pred             ccccCchHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccchhheeeeeHHHHHHHHHHHHHhc--cccccccchHHH
Confidence            346699999999998                  999999999999999999999999999988875  467999999999


Q ss_pred             HHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhHHHHHHHHHHHHHHHHHh
Q 039391           72 LFAISVLVKMSWDRRKVL-EVLILDELVVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKAL  141 (151)
Q Consensus        72 l~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~l  141 (151)
                      ++++........+.+... ... ...+....      ..  ........+++|+.||++|+++|++++++.
T Consensus       117 l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~--~~~~~~~~~~v~~~aHlgG~l~G~~~~~~~  178 (180)
T d3b45a1         117 LMGYVWLRGERDPQSGIYLQRG-LIIFALIW------IV--AGWFDLFGMSMANGAHIAGLAVGLAMAFVD  178 (180)
T ss_dssp             HHHHHHHHHHHCGGGSCCCCHH-HHHHHHHH------HH--HHHTTSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhcchhHHhhHHH-HHHHHHHH------HH--HHHHHhccCchHHHHHHHHHHHHHHHHHHH
Confidence            999876432221111100 000 00011100      01  112233468999999999999999999874