Citrus Sinensis ID: 039467

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------
EDWQKEKRDFLRSLSRISTLPKTNMTDTSTGGTLPGQMASMASSPQISSGPSGMELVPLANKPLLEKKATVYAEVVKNLNNARQQGLPFKPATAFKGAYESLAIESSSGKSVNIQKIWHLLQTMMGEHATVQQTASRKMSLVIGARRHLEWGHEKYIMDTIQSHPAQAALGGVVGNLQRVRAFLRIRLRDYGVLDFDIGDTRRQPPVDTTWQQIYFCLRTGYYDEARNVALSSRASNQFAPLLTEWINTGGMVPPEIAAAASEECDKMLRMGDRVGRAAYDKKKLLLYAIISGSRRQIDRLLRDLPTLFSTIEDFLWFKLSAIRDVPSEAPSVVLSDGLAPYSLDDLQVYLNKFDPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKESGDEGYNIDAAHISIVLADHGMALEYYAQAAAAVGGGQLSWTGRANVDQQRQKSLMLKQLLTELLLRDGGIYLLLGSRGAGEEGELGRYITDLKARQQFLLEAAGQCQEAGLYDKSIELQKRVGAFSMALDTINKCLSEAIFAMSRGRLDGESQTASLIHSGNEILEMEKYYPEVSLHEREQVLEQQTVLRQLEAILSVHKMARSGHYLDALREVAKLPFLPFDPRVPDAMVDVFQSLSPHVQACVPDLLRVALTCLDNVTDTDGSLRAMRAKIANFLANNMNQNWPRDLYERVARSL
ccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHccHHHHHHcHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHcHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHHHHccccccccEEccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHcc
ccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccHcHEEEEEEEEEcccccccccccccccccccccHHHHEHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccccHHHHHHcHHHHHHHHHHHHccccccccccccHHHcccccHHHHHHHHHHHcHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHccccccccccHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHc
EDWQKEKRDFLRSLSristlpktnmtdtstggtlpgqmasmasspqissgpsgmelvplankplleKKATVYAEVVKNLNNarqqglpfkpatafkgAYESLAiesssgksvnIQKIWHLLQTMMGEHATVQQTASRKMSLVIGARrhlewgheKYIMDTIQshpaqaalggvVGNLQRVRAFLRIRLRdygvldfdigdtrrqppvdttwQQIYFCLRTGYYDEARNVALSSRASNQFAPLLTEWintggmvppeiAAAASEECDKMLRMGDRVGRAAYDKKKLLLYAIISGSRRQIDRLLRDLPTLFSTIEDFLWFKLSairdvpseapsvvlsdglapysldDLQVYLnkfdpsyytkngkdplvyPYVLLLSIQLLPAVLYlskesgdegynidaAHISIVLADHGMALEYYAQAAAAvgggqlswtgranvDQQRQKSLMLKQLLTELLLRDGGIYlllgsrgageegelGRYITDLKARQQFLLEAAGQcqeaglydKSIELQKRVGAFSMALDTINKCLSEAIFAMsrgrldgesqtASLIHSGNEILemekyypevslhEREQVLEQQTVLRQLEAILSVHKMARSGHYLDALREvaklpflpfdprvpdAMVDVFQslsphvqacVPDLLRVALTCldnvtdtdgSLRAMRAKIANFLANnmnqnwprDLYERVARSL
edwqkekrdflrslsristlpktnmtdtstgGTLPGQMASMASSPQISSGPSGMELVPLANKPLLEKKATVYAEVVKNLnnarqqglpFKPATAFKGAYESLAiesssgksVNIQKIWHLLQTMMGEHATVQQTASRKMSLVIGARRHLEWGHEKYIMDTIQSHPAQAALGGVVGNLQRVRAFLRIRLRdygvldfdigdtrrqppvdttwQQIYFCLRTGYYDEARNVALSSRASNQFAPLLTEWINTGGMVPPEIAAAASEECDKMLRMGDRVgraaydkkKLLLYAIISGSRRQIDRLLRDLPTLFSTIEDFLWFKLSAIRDVPSEAPSVVLSDGLAPYSLDDLQVYLNKFDPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKESGDEGYNIDAAHISIVLADHGMALEYYAQAAAAVGGGQLSWTGRANVDQQRQKSLMLKQLLTELLLRDGGIYLLLgsrgageeGELGRYITDLKARQQFLLEAAGQCQEAGLYDKSIELQKRVGAFSMALDTINKCLSEAIFAMSRGRLDGESQTASLIHSGNEILEMEKYYPEVSLHEREQVLEQQTVLRQLEAILSVHKMARSGHYLDALREVAKLPFLPFDPRVPDAMVDVFQSLSPHVQACVPDLLRVALTCLDNVTDTDGSLRAMRAKIANflannmnqnwprdLYERVARSL
EDWQKEKRDFLRSLSRISTLPKTNMTDTSTGGTLPGQMASMASSPQISSGPSGMELVPLANKPLLEKKATVYAEVVKNLNNARQQGLPFKPATAFKGAYESLAIESSSGKSVNIQKIWHLLQTMMGEHATVQQTASRKMSLVIGARRHLEWGHEKYIMDTIQSHPAQAALGGVVGNLQRVRAFLRIRLRDYGVLDFDIGDTRRQPPVDTTWQQIYFCLRTGYYDEARNVALSSRASNQFAPLLTEWINTGGMVPPEIAAAASEECDKMLRMGDRVGRAAYDKKKLLLYAIISGSRRQIDRLLRDLPTLFSTIEDFLWFKLSAIRDVPSEAPSVVLSDGLAPYSLDDLQVYLNKFDPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKESGDEGYNIDAAHISIVLADHGMALEYYaqaaaavgggqLSWTGRANVDQQRQKSlmlkqlltelllrdggiylllgSRGAGEEGELGRYITDLKARQQFLLEAAGQCQEAGLYDKSIELQKRVGAFSMALDTINKCLSEAIFAMSRGRLDGESQTASLIHSGNEILEMEKYYPEVSLHEREQVLEQQTVLRQLEAILSVHKMARSGHYLDALREVAKLPFLPFDPRVPDAMVDVFQSLSPHVQACVPDLLRVALTCLDNVTDTDGSLRAMRAKIANFLANNMNQNWPRDLYERVARSL
***************************************************************LLEKKATVYAEVVKNLNNARQQGLPFKPATAFKGAYESLAIE***GKSVNIQKIWHLLQTMMGEHATVQQTASRKMSLVIGARRHLEWGHEKYIMDTIQSHPAQAALGGVVGNLQRVRAFLRIRLRDYGVLDFDIGDTRRQPPVDTTWQQIYFCLRTGYYDEARNVALSSRASNQFAPLLTEWINTGGMVPPEIAAAASEECDKMLRMGDRVGRAAYDKKKLLLYAIISGSRRQIDRLLRDLPTLFSTIEDFLWFKLSAIRDVPSEAPSVVLSDGLAPYSLDDLQVYLNKFDPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKESGDEGYNIDAAHISIVLADHGMALEYYAQAAAAVGGGQLSWTGRANVDQQRQKSLMLKQLLTELLLRDGGIYLLLGSRGAGEEGELGRYITDLKARQQFLLEAAGQCQEAGLYDKSIELQKRVGAFSMALDTINKCLSEAIFAMSRGRL*******SLIHSGNEILEMEKYYPEVSLHEREQVLEQQTVLRQLEAILSVHKMARSGHYLDALREVAKLPFLPFDPRVPDAMVDVFQSLSPHVQACVPDLLRVALTCLDNVTDTDGSLRAMRAKIANFLANNMNQNWPRDLY*******
EDWQKEKRDFLRS*********************************************************VYAEVVKNLNNARQ*GLPFKPATAFKGAY*************NIQKIWHLLQTMMG*************SLVIGARRHLEWGHEKYIMDTIQSHPAQAALGGVVGNLQRVRAFLRIRLRDYGVLDFDIGDTRRQPPVDTTWQQIYFCLRTGYYDEARNVALSSRASNQFAPLLTEWI*********************LRMGDRV*RAAYDKKKLLLYAIISGSRRQIDRLLRDLPTLFSTIEDFLWFKLSAI***************LAPYSLDDLQVYLNKFDPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKESGDEGYNIDAAHISIVLADHGMALEYYAQAAAAVGGGQLSWTGRANVDQQRQKSLMLKQLLTELLLRDGGIYLLLGSRGAGEEGELGRYITDLKARQQFLLEAAGQCQEAGLYDKSIELQKRVGAFSMALDTINKCLSEA********************SGNEILEMEKYYPE*******QVLEQQTVLRQLEAILSVHKMARSGHYLDALREVAKLPFLPFDPRVPDAMVDVFQSLSPHVQACVPDLLRVALTCLDN*************KIANFLANNMNQNWPRDLYERVARSL
*********FLRSLSRISTLPKTNMTDTSTGGTLPGQ**************SGMELVPLANKPLLEKKATVYAEVVKNLNNARQQGLPFKPATAFKGAYESLAIESSSGKSVNIQKIWHLLQTMMGEHA*********MSLVIGARRHLEWGHEKYIMDTIQSHPAQAALGGVVGNLQRVRAFLRIRLRDYGVLDFDIGDTRRQPPVDTTWQQIYFCLRTGYYDEARNVALSSRASNQFAPLLTEWINTGGMVPPEIAAAASEECDKMLRMGDRVGRAAYDKKKLLLYAIISGSRRQIDRLLRDLPTLFSTIEDFLWFKLSAIRDVPSEAPSVVLSDGLAPYSLDDLQVYLNKFDPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKESGDEGYNIDAAHISIVLADHGMALEYYAQAAAAVGGGQLSWTGRANVDQQRQKSLMLKQLLTELLLRDGGIYLLLGSRGAGEEGELGRYITDLKARQQFLLEAAGQCQEAGLYDKSIELQKRVGAFSMALDTINKCLSEAIFAMSRGRLDGESQTASLIHSGNEILEMEKYYPEVSLHEREQVLEQQTVLRQLEAILSVHKMARSGHYLDALREVAKLPFLPFDPRVPDAMVDVFQSLSPHVQACVPDLLRVALTCLDNVTDTDGSLRAMRAKIANFLANNMNQNWPRDLYERVARSL
*DWQKEKRDFLRSLS******************************************PLANKPLLEKKATVYAEVVKNLNNARQQGLPFKPATAFKGAYESLAIESSSGKSVNIQKIWHLLQTMMGEHATVQQTASRKMSLVIGARRHLEWGHEKYIMDTIQSHPAQAALGGVVGNLQRVRAFLRIRLRDYGVLDFDIGDTRRQPPVDTTWQQIYFCLRTGYYDEARNVALSSRASNQFAPLLTEWINTGGMVPPEIAAAASEECDKMLRMGDRVGRAAYDKKKLLLYAIISGSRRQIDRLLRDLPTLFSTIEDFLWFKLSAIRDVPSEAPSVVLSDGLAPYSLDDLQVYLNKFDPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKESGDEGYNIDAAHISIVLADHGMALEYYAQAAAAVGGGQLSWTGRANVDQQRQKSLMLKQLLTELLLRDGGIYLLLGSRGAGEEGELGRYITDLKARQQFLLEAAGQCQEAGLYDKSIELQKRVGAFSMALDTINKCLSEAIFAMSRGRLDGESQTASLIHSGNEILEMEKYYPEVSLHEREQVLEQQTVLRQLEAILSVHKMARSGHYLDALREVAKLPFLPFDPRVPDAMVDVFQSLSPHVQACVPDLLRVALTCLDNVTDTDGSLRAMRAKIANFLANNMNQNWPRDLYERVARSL
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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EDWQKEKRDFLRSLSRISTLPKTNMTDTSTGGTLPGQMASMASSPQISSGPSGMELVPLANKPLLEKKATVYAEVVKNLNNARQQGLPFKPATAFKGAYESLAIESSSGKSVNIQKIWHLLQTMMGEHATVQQTASRKMSLVIGARRHLEWGHEKYIMDTIQSHPAQAALGGVVGNLQRVRAFLRIRLRDYGVLDFDIGDTRRQPPVDTTWQQIYFCLRTGYYDEARNVALSSRASNQFAPLLTEWINTGGMVPPEIAAAASEECDKMLRMGDRVGRAAYDKKKLLLYAIISGSRRQIDRLLRDLPTLFSTIEDFLWFKLSAIRDVPSEAPSVVLSDGLAPYSLDDLQVYLNKFDPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKESGDEGYNIDAAHISIVLADHGMALEYYAQAAAAVGGGQLSWTGRANVDQQRQKSLMLKQLLTELLLRDGGIYLLLGSRGAGEEGELGRYITDLKARQQFLLEAAGQCQEAGLYDKSIELQKRVGAFSMALDTINKCLSEAIFAMSRGRLDGESQTASLIHSGNEILEMEKYYPEVSLHEREQVLEQQTVLRQLEAILSVHKMARSGHYLDALREVAKLPFLPFDPRVPDAMVDVFQSLSPHVQACVPDLLRVALTCLDNVTDTDGSLRAMRAKIANFLANNMNQNWPRDLYERVARSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query687 2.2.26 [Sep-21-2011]
O22224861 Uncharacterized protein A yes no 0.997 0.795 0.696 0.0
O94418851 Meiotically up-regulated yes no 0.687 0.554 0.223 1e-15
P34077839 Nucleoporin NIC96 OS=Sacc yes no 0.764 0.625 0.206 5e-10
Q8BJ71819 Nuclear pore complex prot yes no 0.682 0.572 0.217 7e-10
Q66HC5819 Nuclear pore complex prot yes no 0.682 0.572 0.217 1e-09
A5PJZ5819 Nuclear pore complex prot yes no 0.719 0.603 0.211 1e-09
Q8N1F7819 Nuclear pore complex prot yes no 0.682 0.572 0.217 2e-09
Q5R822819 Nuclear pore complex prot no no 0.682 0.572 0.216 3e-09
Q7ZU29820 Nuclear pore complex prot yes no 0.579 0.485 0.225 3e-09
Q7ZX96820 Nuclear pore complex prot N/A no 0.353 0.296 0.256 1e-08
>sp|O22224|Y2162_ARATH Uncharacterized protein At2g41620 OS=Arabidopsis thaliana GN=At2g41620 PE=2 SV=2 Back     alignment and function desciption
 Score = 1040 bits (2689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/726 (69%), Positives = 592/726 (81%), Gaps = 41/726 (5%)

Query: 1   EDWQKEKRDFLRSLSRISTLPKTNMTDTSTGGTLPGQMASMASSPQISSGPSGMELVPLA 60
           EDW+KEKRDFL+SLSRIS LPKTNM DTS      GQ+  + SSP++SS P G ELV LA
Sbjct: 138 EDWRKEKRDFLQSLSRISMLPKTNMIDTSREAH-AGQLVPVGSSPRVSSTP-GKELVALA 195

Query: 61  NKPLLEKKATVYAEVVKNLNNARQQGLPFKPATAFKGAYESLAIESSSGKSVNIQKIWHL 120
           N P+ EKKA VY EVVK LN +R++G+PF+PA  FK AY++L  E + GKSVN+QKIW L
Sbjct: 196 NIPIHEKKAYVYGEVVKKLNTSRERGMPFRPAMCFKDAYDTLGAEVTRGKSVNMQKIWQL 255

Query: 121 LQTMMGEHATVQQTASRKMSLVIGARRHLEWGHEKYIMDTIQSHPAQAALGGVVGNLQRV 180
           +Q + GE + V+Q  S++M+L IGAR HL+ GHEK+IMDTIQ+HP QAALGG VGNLQR+
Sbjct: 256 VQAITGEDSAVRQGVSKRMALAIGARHHLQHGHEKFIMDTIQTHPTQAALGGSVGNLQRI 315

Query: 181 RAFLRIRLRDYGVLDFDIGDTRRQPPVDTTWQQIYFCLRTGYYDEARNVALSSRASNQFA 240
           RAFLRIRLRDYGVLDFD  D RRQPPVDTTWQQIYFCLRTGYY+EAR +A S+R+S QFA
Sbjct: 316 RAFLRIRLRDYGVLDFDSTDARRQPPVDTTWQQIYFCLRTGYYEEAREIARSTRSSQQFA 375

Query: 241 PLLTEWINTGGMVPPEIAAAASEECDKMLRMGDRVGRAAYDKKKLLLYAIISGSRRQIDR 300
           PLLTEWI T GMV  E AA ASEEC+KMLRMGDR+GR AYDKKKLLLY IISGSRRQI+R
Sbjct: 376 PLLTEWITTDGMVAAESAAIASEECEKMLRMGDRLGRTAYDKKKLLLYTIISGSRRQIER 435

Query: 301 LLRDLPTLFSTIEDFLWFKLSAIRDVPSEAPSVVLSDGLAPYSLDDLQVYLNKFDPSYYT 360
           +LRDL TLF+TIEDFLWFKLS IRDV   + SVVL+DGLAPYSLDDLQ YLNKF+PSYYT
Sbjct: 436 ILRDLSTLFNTIEDFLWFKLSCIRDVTGGSSSVVLNDGLAPYSLDDLQAYLNKFEPSYYT 495

Query: 361 KNGKDPLVYPYVLLLSIQLLPAVLYLSKESGDEGYNIDAAHISIVLADHG---------- 410
           KNGKDPLVYPYVLLLS+QLLPA+++LSKE+GD GYNIDA HI+I L DH           
Sbjct: 496 KNGKDPLVYPYVLLLSVQLLPAIMHLSKEAGDGGYNIDAVHIAISLVDHSVLSEGSGTGH 555

Query: 411 -----------------------------MALEYYAQAAAAVGGGQLSWTGRANVDQQRQ 441
                                        M +EYYAQAAA VGGGQL+W+GR+NVDQQRQ
Sbjct: 556 KLSVMDSNAEASSMIRQYGSMFLHHGDLQMTVEYYAQAAATVGGGQLAWSGRSNVDQQRQ 615

Query: 442 KSLMLKQLLTELLLRDGGIYLLLGSRGAGEEGELGRYITDLKARQQFLLEAAGQCQEAGL 501
           ++LMLKQLLTE+LLR+ GIY LLG+RG+GEEG+LGR+  D + RQQFL+EAA QCQEAGL
Sbjct: 616 RNLMLKQLLTEILLRERGIYFLLGARGSGEEGQLGRFFPDSRLRQQFLVEAAHQCQEAGL 675

Query: 502 YDKSIELQKRVGAFSMALDTINKCLSEAIFAMSRGRLDGESQTASLIHSGNEILEMEKYY 561
           YDKSIELQKRVGAFS AL+TINKCLSEAI +++RGRLDGES+T+ LI +GN+ILE  KYY
Sbjct: 676 YDKSIELQKRVGAFSAALETINKCLSEAICSLARGRLDGESRTSGLILAGNDILETYKYY 735

Query: 562 PEVSLHEREQVLEQQTVLRQLEAILSVHKMARSGHYLDALREVAKLPFLPFDPRVPDAMV 621
           PEVSL ERE+V+EQ+T+LR+LEAILS+HK+ R G++LDALRE+AKLPFL  DPR+PDA  
Sbjct: 736 PEVSLQERERVMEQETILRELEAILSIHKLGRLGNHLDALREIAKLPFLHLDPRMPDATA 795

Query: 622 DVFQSLSPHVQACVPDLLRVALTCLDNVTDTDGSLRAMRAKIANFLANNMNQNWPRDLYE 681
           DVFQS SP+ Q CVPDLL+VALTCLDNV DTDGS+RAMR+KIA FLA+N ++NWPRDLYE
Sbjct: 796 DVFQSASPYFQTCVPDLLKVALTCLDNVPDTDGSIRAMRSKIAGFLASNTHRNWPRDLYE 855

Query: 682 RVARSL 687
           +VARS 
Sbjct: 856 KVARSF 861

Arabidopsis thaliana (taxid: 3702)
>sp|O94418|MUG87_SCHPO Meiotically up-regulated gene 87 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug87 PE=1 SV=1 Back     alignment and function description
>sp|P34077|NIC96_YEAST Nucleoporin NIC96 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NIC96 PE=1 SV=2 Back     alignment and function description
>sp|Q8BJ71|NUP93_MOUSE Nuclear pore complex protein Nup93 OS=Mus musculus GN=Nup93 PE=2 SV=1 Back     alignment and function description
>sp|Q66HC5|NUP93_RAT Nuclear pore complex protein Nup93 OS=Rattus norvegicus GN=Nup93 PE=1 SV=1 Back     alignment and function description
>sp|A5PJZ5|NUP93_BOVIN Nuclear pore complex protein Nup93 OS=Bos taurus GN=NUP93 PE=2 SV=1 Back     alignment and function description
>sp|Q8N1F7|NUP93_HUMAN Nuclear pore complex protein Nup93 OS=Homo sapiens GN=NUP93 PE=1 SV=2 Back     alignment and function description
>sp|Q5R822|NUP93_PONAB Nuclear pore complex protein Nup93 OS=Pongo abelii GN=NUP93 PE=2 SV=2 Back     alignment and function description
>sp|Q7ZU29|NUP93_DANRE Nuclear pore complex protein Nup93 OS=Danio rerio GN=dye PE=2 SV=1 Back     alignment and function description
>sp|Q7ZX96|NUP93_XENLA Nuclear pore complex protein Nup93 OS=Xenopus laevis GN=nup93 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query687
225441896 863 PREDICTED: uncharacterized protein At2g4 1.0 0.796 0.782 0.0
224125794 863 predicted protein [Populus trichocarpa] 1.0 0.796 0.760 0.0
356550602 861 PREDICTED: uncharacterized protein At2g4 0.998 0.796 0.758 0.0
357455161 859 hypothetical protein MTR_2g103370 [Medic 0.995 0.796 0.757 0.0
449437771 863 PREDICTED: uncharacterized protein At2g4 1.0 0.796 0.734 0.0
224118114 863 predicted protein [Populus trichocarpa] 1.0 0.796 0.752 0.0
356555594 861 PREDICTED: uncharacterized protein At2g4 0.998 0.796 0.763 0.0
18405761 861 Nup93/Nic96 nucleoporin interacting comp 0.997 0.795 0.696 0.0
297827805 855 nucleoporin interacting component family 0.997 0.801 0.699 0.0
115453011 870 Os03g0349000 [Oryza sativa Japonica Grou 0.997 0.787 0.654 0.0
>gi|225441896|ref|XP_002284404.1| PREDICTED: uncharacterized protein At2g41620 [Vitis vinifera] gi|297739625|emb|CBI29807.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1139 bits (2947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/726 (78%), Positives = 628/726 (86%), Gaps = 39/726 (5%)

Query: 1   EDWQKEKRDFLRSLSRISTLPKTNMTDTSTGGTLPGQMASMASSPQISSGPSGMELVPLA 60
           EDWQKEKRDFL+SLSRISTLPKTN++D+STG T PGQ+ASM SSPQ+SSG S MELVPLA
Sbjct: 138 EDWQKEKRDFLQSLSRISTLPKTNISDSSTGATRPGQIASMISSPQVSSGLSSMELVPLA 197

Query: 61  NKPLLEKKATVYAEVVKNLNNARQQGLPFKPATAFKGAYESLAIESSSGKSVNIQKIWHL 120
           NKP+LEKK +VYAEVVKNLN+AR++GLPFKPATAFKGAY+SL +E+S GKSVN+QKIWHL
Sbjct: 198 NKPVLEKKTSVYAEVVKNLNSARERGLPFKPATAFKGAYDSLGLETSGGKSVNMQKIWHL 257

Query: 121 LQTMMGEHATVQQTASRKMSLVIGARRHLEWGHEKYIMDTIQSHPAQAALGGVVGNLQRV 180
           +QT+MGE    Q   S+KMSLVIGARRHLEWGHEKY++DTIQSHPAQAALGGVVGNLQR+
Sbjct: 258 IQTLMGEDTAAQWNVSKKMSLVIGARRHLEWGHEKYMIDTIQSHPAQAALGGVVGNLQRI 317

Query: 181 RAFLRIRLRDYGVLDFDIGDTRRQPPVDTTWQQIYFCLRTGYYDEARNVALSSRASNQFA 240
            AFLRIRLRDYGVLDFD GD RRQPPVDTTWQQIYFCLRTGYY+EA  VA SSR SNQFA
Sbjct: 318 HAFLRIRLRDYGVLDFDAGDARRQPPVDTTWQQIYFCLRTGYYEEAIEVARSSRVSNQFA 377

Query: 241 PLLTEWINTGGMVPPEIAAAASEECDKMLRMGDRVGRAAYDKKKLLLYAIISGSRRQIDR 300
             LTEWI T GMV  EIAA ASEECDKMLRMGDRVGRAAYDKK+LLLYAIISGSRR IDR
Sbjct: 378 SQLTEWITTRGMVSAEIAAVASEECDKMLRMGDRVGRAAYDKKRLLLYAIISGSRRHIDR 437

Query: 301 LLRDLPTLFSTIEDFLWFKLSAIRDVPSEAPSVVLSDGLAPYSLDDLQVYLNKFDPSYYT 360
           LLRDLPTLF+TIEDFLWFKLSA+RD P  + SVVL++GL PYSLDDLQ YLNKF+PSYYT
Sbjct: 438 LLRDLPTLFNTIEDFLWFKLSAVRDCPGGSSSVVLNEGLVPYSLDDLQNYLNKFEPSYYT 497

Query: 361 KNGKDPLVYPYVLLLSIQLLPAVLYLSKESGDEGYNIDAAHISIVLADHGM--------- 411
           KNGKDPLVYPYVLLLSIQLLPAVLYLSKE G EGYN+DA HISIVLADHG+         
Sbjct: 498 KNGKDPLVYPYVLLLSIQLLPAVLYLSKEMGVEGYNVDATHISIVLADHGVLSEGAGVGQ 557

Query: 412 ------------------------------ALEYYAQAAAAVGGGQLSWTGRANVDQQRQ 441
                                         ALEYYAQAAAAVGGGQLSWTGR N+DQQ Q
Sbjct: 558 KLGVMDAFAEASSIIRQYGSVYLRAGDLSTALEYYAQAAAAVGGGQLSWTGRGNIDQQWQ 617

Query: 442 KSLMLKQLLTELLLRDGGIYLLLGSRGAGEEGELGRYITDLKARQQFLLEAAGQCQEAGL 501
           ++LMLKQLLTELLLRDGGIYLLLG RGAGEEGEL R++TD+KARQQFLLEA+ QCQ+AGL
Sbjct: 618 RNLMLKQLLTELLLRDGGIYLLLGPRGAGEEGELARFLTDVKARQQFLLEASRQCQDAGL 677

Query: 502 YDKSIELQKRVGAFSMALDTINKCLSEAIFAMSRGRLDGESQTASLIHSGNEILEMEKYY 561
           YD+SIE+QKR+GAFSMALDTINKCLSEA+ A++RGRLDGES+TA LI SGNEILE  KY+
Sbjct: 678 YDQSIEIQKRIGAFSMALDTINKCLSEAVCALARGRLDGESRTAGLIQSGNEILETYKYF 737

Query: 562 PEVSLHEREQVLEQQTVLRQLEAILSVHKMARSGHYLDALREVAKLPFLPFDPRVPDAMV 621
           PEVSL ERE V+EQQTVLR+LEAILS+HK+AR GHYLDALREVAKLPFLP DPR PD   
Sbjct: 738 PEVSLQEREHVMEQQTVLRELEAILSIHKLARVGHYLDALREVAKLPFLPLDPRAPDTTP 797

Query: 622 DVFQSLSPHVQACVPDLLRVALTCLDNVTDTDGSLRAMRAKIANFLANNMNQNWPRDLYE 681
           DVFQ+LSPHVQACVPDLL++AL+CLD VTDTDGSLRA+R KIANFLANN+N+NWPRDLYE
Sbjct: 798 DVFQNLSPHVQACVPDLLKIALSCLDYVTDTDGSLRALRTKIANFLANNLNRNWPRDLYE 857

Query: 682 RVARSL 687
           +VAR+L
Sbjct: 858 KVARTL 863

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224125794|ref|XP_002329719.1| predicted protein [Populus trichocarpa] gi|222870627|gb|EEF07758.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356550602|ref|XP_003543674.1| PREDICTED: uncharacterized protein At2g41620-like [Glycine max] Back     alignment and taxonomy information
>gi|357455161|ref|XP_003597861.1| hypothetical protein MTR_2g103370 [Medicago truncatula] gi|87162600|gb|ABD28395.1| Nucleoporin interacting component; Protein prenyltransferase [Medicago truncatula] gi|355486909|gb|AES68112.1| hypothetical protein MTR_2g103370 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449437771|ref|XP_004136664.1| PREDICTED: uncharacterized protein At2g41620-like [Cucumis sativus] gi|449494745|ref|XP_004159635.1| PREDICTED: uncharacterized protein At2g41620-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224118114|ref|XP_002317735.1| predicted protein [Populus trichocarpa] gi|222858408|gb|EEE95955.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356555594|ref|XP_003546115.1| PREDICTED: uncharacterized protein At2g41620-like [Glycine max] Back     alignment and taxonomy information
>gi|18405761|ref|NP_565951.1| Nup93/Nic96 nucleoporin interacting component-containing protein [Arabidopsis thaliana] gi|21542465|sp|O22224.2|Y2162_ARATH RecName: Full=Uncharacterized protein At2g41620 gi|14334432|gb|AAK59414.1| unknown protein [Arabidopsis thaliana] gi|20196948|gb|AAB84345.2| expressed protein [Arabidopsis thaliana] gi|21281026|gb|AAM44953.1| unknown protein [Arabidopsis thaliana] gi|330254914|gb|AEC10008.1| Nup93/Nic96 nucleoporin interacting component-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297827805|ref|XP_002881785.1| nucleoporin interacting component family protein [Arabidopsis lyrata subsp. lyrata] gi|297327624|gb|EFH58044.1| nucleoporin interacting component family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|115453011|ref|NP_001050106.1| Os03g0349000 [Oryza sativa Japonica Group] gi|108708126|gb|ABF95921.1| nucleoporin interacting component, putative, expressed [Oryza sativa Japonica Group] gi|113548577|dbj|BAF12020.1| Os03g0349000 [Oryza sativa Japonica Group] gi|215712263|dbj|BAG94390.1| unnamed protein product [Oryza sativa Japonica Group] gi|222624923|gb|EEE59055.1| hypothetical protein OsJ_10833 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query687
TAIR|locus:2062693861 AT2G41620 [Arabidopsis thalian 0.599 0.478 0.724 9.2e-257
POMBASE|SPCC1620.11851 nup97 "nucleoporin Nic96 homol 0.355 0.286 0.255 5.4e-14
CGD|CAL0004316960 orf19.2002 [Candida albicans ( 0.554 0.396 0.232 7.6e-09
UNIPROTKB|G0ZGU31112 NIC96 "Nic96p" [Chaetomium the 0.556 0.343 0.220 1.2e-08
ASPGD|ASPL00000691141048 nic96 [Emericella nidulans (ta 0.391 0.256 0.253 1.8e-08
SGD|S000001898839 NIC96 "Linker nucleoporin comp 0.358 0.293 0.219 2e-08
UNIPROTKB|F1NEI9819 NUP93 "Uncharacterized protein 0.285 0.239 0.270 1e-07
UNIPROTKB|G4N6751119 MGG_08590 "Nucleoporin NIC96" 0.385 0.236 0.208 1.2e-07
ZFIN|ZDB-GENE-990415-46820 nup93 "nucleoporin 93" [Danio 0.282 0.236 0.272 1e-06
MGI|MGI:1919055819 Nup93 "nucleoporin 93" [Mus mu 0.245 0.206 0.297 1.2e-06
TAIR|locus:2062693 AT2G41620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1560 (554.2 bits), Expect = 9.2e-257, Sum P(2) = 9.2e-257
 Identities = 300/414 (72%), Positives = 346/414 (83%)

Query:     1 EDWQKEKRDFLRSLSRISTLPKTNMTDTSTGGTLPGQMASMASSPQISSGPSGMELVPLA 60
             EDW+KEKRDFL+SLSRIS LPKTNM DTS      GQ+  + SSP++SS P G ELV LA
Sbjct:   138 EDWRKEKRDFLQSLSRISMLPKTNMIDTSREAHA-GQLVPVGSSPRVSSTP-GKELVALA 195

Query:    61 NKPLLEKKATVYAEVVKNLNNARQQGLPFKPATAFKGAYESLAIESSSGKSVNIQKIWHL 120
             N P+ EKKA VY EVVK LN +R++G+PF+PA  FK AY++L  E + GKSVN+QKIW L
Sbjct:   196 NIPIHEKKAYVYGEVVKKLNTSRERGMPFRPAMCFKDAYDTLGAEVTRGKSVNMQKIWQL 255

Query:   121 LQTMMGEHATVQQTASRKMSLVIGARRHLEWGHEKYIMDTIQSHPAQAALGGVVGNLQRV 180
             +Q + GE + V+Q  S++M+L IGAR HL+ GHEK+IMDTIQ+HP QAALGG VGNLQR+
Sbjct:   256 VQAITGEDSAVRQGVSKRMALAIGARHHLQHGHEKFIMDTIQTHPTQAALGGSVGNLQRI 315

Query:   181 RAFLRIRLRDYGVLDFDIGDTRRQPPVDTTWQQIYFCLRTGYYDEARNVALSSRASNQFA 240
             RAFLRIRLRDYGVLDFD  D RRQPPVDTTWQQIYFCLRTGYY+EAR +A S+R+S QFA
Sbjct:   316 RAFLRIRLRDYGVLDFDSTDARRQPPVDTTWQQIYFCLRTGYYEEAREIARSTRSSQQFA 375

Query:   241 PLLTEWINTGGMVPPEIAAAASEECDKMLRMGDRVGRAAYDKKKLLLYAIISGSRRQIDR 300
             PLLTEWI T GMV  E AA ASEEC+KMLRMGDR+GR AYDKKKLLLY IISGSRRQI+R
Sbjct:   376 PLLTEWITTDGMVAAESAAIASEECEKMLRMGDRLGRTAYDKKKLLLYTIISGSRRQIER 435

Query:   301 LLRDLPTLFSTIEDFLWFKLSAIRDVPSEAPSVVLSDGLAPYSLDDLQVYLNKFDPSYYT 360
             +LRDL TLF+TIEDFLWFKLS IRDV   + SVVL+DGLAPYSLDDLQ YLNKF+PSYYT
Sbjct:   436 ILRDLSTLFNTIEDFLWFKLSCIRDVTGGSSSVVLNDGLAPYSLDDLQAYLNKFEPSYYT 495

Query:   361 KNGKDPLVYPYVLLLSIQLLPAVLYLSKESGDEGYNIDAAHISIVLADHGMALE 414
             KNGKDPLVYPYVLLLS+QLLPA+++LSKE+GD GYNIDA HI+I L DH +  E
Sbjct:   496 KNGKDPLVYPYVLLLSVQLLPAIMHLSKEAGDGGYNIDAVHIAISLVDHSVLSE 549
GO:0005634 "nucleus" evidence=ISM
GO:0006810 "transport" evidence=IEA
GO:0005730 "nucleolus" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005635 "nuclear envelope" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006310 "DNA recombination" evidence=RCA
GO:0006406 "mRNA export from nucleus" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0007126 "meiosis" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010074 "maintenance of meristem identity" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010332 "response to gamma radiation" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0031048 "chromatin silencing by small RNA" evidence=RCA
GO:0032204 "regulation of telomere maintenance" evidence=RCA
GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA
GO:0045132 "meiotic chromosome segregation" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
POMBASE|SPCC1620.11 nup97 "nucleoporin Nic96 homolog" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
CGD|CAL0004316 orf19.2002 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|G0ZGU3 NIC96 "Nic96p" [Chaetomium thermophilum var. thermophilum (taxid:285224)] Back     alignment and assigned GO terms
ASPGD|ASPL0000069114 nic96 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
SGD|S000001898 NIC96 "Linker nucleoporin component of the nuclear pore complex (NPC)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|F1NEI9 NUP93 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|G4N675 MGG_08590 "Nucleoporin NIC96" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-990415-46 nup93 "nucleoporin 93" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1919055 Nup93 "nucleoporin 93" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O22224Y2162_ARATHNo assigned EC number0.69690.99700.7955yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query687
pfam04097607 pfam04097, Nic96, Nup93/Nic96 1e-133
>gnl|CDD|217890 pfam04097, Nic96, Nup93/Nic96 Back     alignment and domain information 
 Score =  405 bits (1042), Expect = e-133
 Identities = 166/651 (25%), Positives = 253/651 (38%), Gaps = 111/651 (17%)

Query: 97  GAYESLAIESSSGKSVNIQKIWHLLQTMMGEHATVQQTASRKMSLVIGARRHLEWGHEKY 156
            A+ +LA    S K   +   W +LQ M  E    +  + R   +V G+R++LE    +Y
Sbjct: 1   EAFAALA-SIESLKDRQLADAWLILQQMTDEKEPRKSVSLR-KQIVEGSRKYLERQFLEY 58

Query: 157 IMDTIQSHPAQAALGGVVGNLQRVRAFLRIRLRDYGVLDFDIGDTRRQPPVDTTWQQIYF 216
           + + I  +P +A LGGV  NL +VRAF+RIRL   G  D       +       W  IY+
Sbjct: 59  VDELIAKNPNEAQLGGVPTNLNKVRAFIRIRLARKGQWDD---SGLQIVNGTPLWALIYY 115

Query: 217 CLRTGYYDEARNVA----LSSRASNQFAPLLTEWINT-GGMVPPEIAAAASEECDKMLRM 271
            LR G YDEA  V             F   L  +  +    +PPE+      E ++ +R 
Sbjct: 116 LLRCGDYDEAAEVVENRNGFKSVDRDFPTYLKAYATSPDRRLPPELEDKLHLEYNQRIRN 175

Query: 272 GDRVGRAAYDKKKLLLYAIISGSRRQIDRLLRDLPTLFSTIEDFLWFKLSAIRDVPSEAP 331
                    D  KL +Y II     + D   + L  +  +IED+LW +LS IR+      
Sbjct: 176 SPEG-----DPYKLAVYKII----GRCDLSRKSLSEVALSIEDWLWLQLSLIREDDDG-- 224

Query: 332 SVVLSDGLAPYSLDDLQVYLNKFDPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKESG 391
                  L  Y+LDDLQ  + K+   Y+  NGK P +Y  +LLLS     A+ YL +   
Sbjct: 225 ---SESALERYTLDDLQSLILKYGEKYFNANGK-PFLYFQLLLLSGLFEAAIQYLYRN-- 278

Query: 392 DEGYNIDAAHISIVLADHGM---------------------------------------- 411
            E   +DA H +I LA +G+                                        
Sbjct: 279 -EINRVDAVHFAIALAYYGLLRVSSSESDELLSVDDKDPPPINFARLIGQYTRSFEASDP 337

Query: 412 --ALEYYAQAAAAVGGGQLSWTGRANVDQQRQKSLMLKQLLTELLLRDGGIYLLLGSR-- 467
             AL+Y    A                   +    +  + L EL+L      LLLG    
Sbjct: 338 REALQYLYLIALFKD---------------KTGRSLCHEALRELVLETREFDLLLGDINP 382

Query: 468 -GAGEEGELGRYITDLK------ARQQFLLEAAGQCQEAGLYDKSIELQKRVGAFSMALD 520
            G+   G + R +  +K        +    +AA +  + G ++ +I L    G +   + 
Sbjct: 383 DGSRIPGLIERRLKLIKLEDEEEFLRTITEQAAEEADDRGRFEDAILLYHLAGEYDKVVS 442

Query: 521 TINKCLSEAIFAMSRGRLDGESQTASLIHSGNEILEMEKYYPEVSLHEREQVLEQQTVLR 580
            INK LS+ + +         S    L+    EILE+ K  PEVS     +  E     R
Sbjct: 443 LINKLLSQVL-SQPALSSLSLSARDDLVLLAKEILELYKANPEVSDKVEPKNRE---TCR 498

Query: 581 QLEAILSVHKMARSGHYLDALREVAKLPFLPFDPRVPDAMVDVFQSLSPHVQACVPDLLR 640
            L  +  +  +  +G++  AL  + KLP LP DP       + F +L   V   +PDLL 
Sbjct: 499 LLLRLAEIFDLYHAGNWEQALDAIEKLPLLPLDPSSVRRCAEEFSNLPDEVAKVIPDLLL 558

Query: 641 VALTCLDNVTDT-----------DGSLRAMRAKIANFLANNMNQNWPRDLY 680
             +TCL N+                 L ++R +    +  N     P  + 
Sbjct: 559 ATMTCLSNLYKRLKTSIYGSSGRTDQLNSLRKQAKALM--NYAGMIPYRMP 607

Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1. The structure of Nic96 has revealed a mostly alpha helical structure. Length = 607

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 687
PF04097613 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 100.0
KOG2168835 consensus Cullins [Cell cycle control, cell divisi 100.0
PF04121697 Nup84_Nup100: Nuclear pore protein 84 / 107 ; Inte 97.05
KOG1964 800 consensus Nuclear pore complex, rNup107 component 93.92
PF07575566 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 90.11
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex Back     alignment and domain information 
Probab=100.00  E-value=3.8e-121  Score=1052.05  Aligned_cols=552  Identities=29%  Similarity=0.453  Sum_probs=417.7

Q ss_pred             CcHHHHHHHHHhhhhhccCCCCcccHHHHHHHHHHhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Q 039467           89 FKPATAFKGAYESLAIESSSGKSVNIQKIWHLLQTMMGEHATVQQTASRKMSLVIGARRHLEWGHEKYIMDTIQSHPAQA  168 (687)
Q Consensus        89 ~~l~~~f~~a~~~~~~~~~~~~~~~i~~~W~~l~~~~~e~~~~~~~~~~~~~iv~gsr~yLE~qf~~~v~~~I~~~p~~A  168 (687)
                      ..|+..|+++++.     .+.++.++.++|++++.|+++.. .+.+.+++++||.|||+|||+||++||+++|.+||.+|
T Consensus         2 ~~l~~~f~~~a~~-----~~~~~~~i~~~W~~l~~~~~~~~-~~~~~~~~~~~v~~sr~~LE~qf~~~v~~~v~~~~~~A   75 (613)
T PF04097_consen    2 PNLVEAFASLAQI-----EDFKDRQIADAWKLLSQMTDEPP-SRSSASLRKQIVRGSRRYLEKQFLQYVEETVAKNPNEA   75 (613)
T ss_dssp             -HHHHHHHHHHHH------SHHHHHHHHHHHHHHTT----------TTS---HHHHHHHHHHHHHHHHHHHHHCCCTTS-
T ss_pred             chHHHHHHHHHhc-----cCCchHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhh
Confidence            3577888888741     13356789999999999998776 67788999999999999999999999999999999999


Q ss_pred             hcCCCCCchHHHHHHHHHhhccCCcccccCCcccCCCCCCCcHHHHHHHHhcCCHHHHHHHHHhcc-----CCccHHHHH
Q 039467          169 ALGGVVGNLQRVRAFLRIRLRDYGVLDFDIGDTRRQPPVDTTWQQIYFCLRTGYYDEARNVALSSR-----ASNQFAPLL  243 (687)
Q Consensus       169 ~lGG~P~~~~~V~afl~v~~~~~g~~~~~~~~~~~~~p~~~vWa~IyYlLR~G~~~eA~e~~~~~~-----~~~~F~~~l  243 (687)
                      ++||+|+++++|+|||++++++++.|...+....++   +|+||+||||||||++++|++++++++     ..++|+.||
T Consensus        76 ~~gg~p~~~~~V~afv~~~~~~~~~~~~~~l~~~~~---~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l  152 (613)
T PF04097_consen   76 QLGGVPSTYNKVRAFVNVRLKRPGAWTDSGLEIVNG---DPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYL  152 (613)
T ss_dssp             ---SSS-HHHHHHHHHHCTTBESSCBSSTT--EETT---EEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHH
T ss_pred             cccCCCCcHHHHHHHHHHHhcccCCCcccccccCCC---CccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHH
Confidence            999999999999999999999888777666554444   449999999999999999999996664     258999999


Q ss_pred             HHHHhC-CCCCCHHHHHHhhHHHHHhhhhcccCCCCccchHHHHHHHHHhCCccchhhhhcCchhhhcchhHHHHhhhhc
Q 039467          244 TEWINT-GGMVPPEIAAAASEECDKMLRMGDRVGRAAYDKKKLLLYAIISGSRRQIDRLLRDLPTLFSTIEDFLWFKLSA  322 (687)
Q Consensus       244 ~~y~~s-~~~L~~~~~~~~~~e~~q~~r~~d~~~~~~~DPyK~AvY~iig~cd~~~~~~~~~~~~V~~tiEDwLWlqL~l  322 (687)
                      ++|+++ +++||+++++++..||+|++|...     ..||||+|||||||+||++    ++++|+|+.||||||||||++
T Consensus       153 ~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~-----~~DpyK~AvY~ilg~cD~~----~~~~~~V~~tiED~LW~~L~~  223 (613)
T PF04097_consen  153 KAYASSPDRRLPPELRDKLKLEYNQRIRNST-----DGDPYKRAVYKILGRCDLS----RRHLPEVARTIEDWLWLQLSL  223 (613)
T ss_dssp             HHCTTTTSS---TCCCHHHHHHHHHHTTT-T-----TS-HHHHHHHHHHHT--CC----C-S-TTC--SHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC-----CCChHHHHHHHHHhcCCcc----ccchHHHhCcHHHHHHHHHHh
Confidence            999987 479999999999999999998431     1299999999999999974    577899999999999999999


Q ss_pred             cccCCCCCCcccccCCCCcccHHHHHHHHHhcCccccccCCCCCcchHHHHHHhhcHHHHHHHHhhccCCCCCcchHHHH
Q 039467          323 IRDVPSEAPSVVLSDGLAPYSLDDLQVYLNKFDPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKESGDEGYNIDAAHI  402 (687)
Q Consensus       323 vre~~~~~~~~~~~~~~~~ytL~~LQ~~i~~~Ge~~F~~~~~~p~~yf~vLlLsgqFE~AI~~L~~~~~~~~~~vdAVH~  402 (687)
                      +|+++.++++     ..+.|||++||+.|.+|||+||++ +++|++||++|+||||||+||+||++.   +.+++|||||
T Consensus       224 vr~~~~~~~~-----~~e~~~L~~LQ~~i~~~Ge~~F~~-~~~p~~Yf~~LlLtgqFE~AI~~L~~~---~~~~~dAVH~  294 (613)
T PF04097_consen  224 VREDERSSSS-----AYERYTLEDLQKLILKYGESHFNA-GSNPLLYFQVLLLTGQFEAAIEFLYRN---EFNRVDAVHF  294 (613)
T ss_dssp             ---TTSSSSS-----SS----HHHHHHHHHHH-GGGCTT-------HHHHHHHTT-HHHHHHHHHT-----T-HHHHHHH
T ss_pred             hccCCCcccc-----ccccccHHHHHHHHHHhchhhccc-chhHHHHHHHHHHHhhHHHHHHHHHhh---ccCcccHHHH
Confidence            9999876532     246999999999999999999999 666999999999999999999999996   7799999999


Q ss_pred             HHHHHHhhh--------------------------HHHHHH------HHHhhhcCCccccccccccchhHHHHHHHHHHH
Q 039467          403 SIVLADHGM--------------------------ALEYYA------QAAAAVGGGQLSWTGRANVDQQRQKSLMLKQLL  450 (687)
Q Consensus       403 AIaL~~~gl--------------------------a~~Y~~------~~~~~~~~~~l~~~~r~~~d~~~~~~~~~~~~l  450 (687)
                      ||||+|||+                          ++..|+      +...|+   .+.|++|.++|++ |.+ +||+||
T Consensus       295 AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~~Al---~Y~~li~~~~~~~-~~~-l~~~~l  369 (613)
T PF04097_consen  295 AIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEITDPREAL---QYLYLICLFKDPE-QRN-LFHECL  369 (613)
T ss_dssp             HHHHHHTT------------------------HHHHHHHHHHTTTTT-HHHHH---HHHHGGGGS-SCC-HHH-HHHHHH
T ss_pred             HHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhccCHHHHH---HHHHHHHHcCCch-HHH-HHHHHH
Confidence            999999995                          111121      111111   2234667788755 555 889999


Q ss_pred             HHHHHhhcCcceeecc---cCCCCCCcccc------ccCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHhhchHHHHHH
Q 039467          451 TELLLRDGGIYLLLGS---RGAGEEGELGR------YITDLKARQQFLLEAAGQCQEAGLYDKSIELQKRVGAFSMALDT  521 (687)
Q Consensus       451 ~eLvletref~~LLG~---dG~r~~G~I~~------~l~d~~~~~~~i~~aA~~ae~~Gr~~dAi~LY~La~~yd~vl~l  521 (687)
                      +|||+|||||++|||.   ||+|+||+|++      |..+.++.++++.+||++|+++|+++|||+||+|||+||+|+++
T Consensus       370 ~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~l  449 (613)
T PF04097_consen  370 RELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSL  449 (613)
T ss_dssp             HHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHH
Confidence            9999999999999994   99999999999      44455667888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHHhcCCCcchhhhHHHHhHHHHHHHHHHHHHHHHHHHhCCHHHHH
Q 039467          522 INKCLSEAIFAMSRGRLDGESQTASLIHSGNEILEMEKYYPEVSLHEREQVLEQQTVLRQLEAILSVHKMARSGHYLDAL  601 (687)
Q Consensus       522 ln~~Ls~~ls~~~~~~~~~~~~~~~l~~~a~~i~~~y~~~~~~s~~~~~~~~~~~~~l~~Ll~l~~f~~~~~~~~~~~AL  601 (687)
                      +|++||++|+++.. .....+..++++.+|++|.++|+.++.++.+.+.+..   .+|.+|++|++||++||+|+|++||
T Consensus       450 ln~~Ls~~l~~~~~-~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~---~t~~~Ll~L~~ff~~~~~g~~~~AL  525 (613)
T PF04097_consen  450 LNRLLSQVLSQPSS-SSLSDSERERLIELAKEILERYKSNPHISSKVSRKNR---ETFQLLLDLAEFFDLYHAGQYEQAL  525 (613)
T ss_dssp             HHHHHHHHHHCSST-SSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHH---HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHcCccc-cccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHH---HHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999998765 1122334578999999999999988765444444443   4567899999999999999999999


Q ss_pred             HHHhCCCcccCCCCChHHHHHHhccCChhHHHhhhHHHHHHHHHhHhhhcc-----------chhHHHHHHHHHHH--HH
Q 039467          602 REVAKLPFLPFDPRVPDAMVDVFQSLSPHVQACVPDLLRVALTCLDNVTDT-----------DGSLRAMRAKIANF--LA  668 (687)
Q Consensus       602 ~~i~~L~ilPl~~~~v~~~a~~f~~l~~~V~~~iP~lLl~~m~cl~~~~~~-----------~~~~~~l~~~~~~~--~a  668 (687)
                      +.|++|+|||.++.+|++||++|+++|++|++|+|+||+++|+|+.++.++           ...++.++++++++  ||
T Consensus       526 ~~i~~L~liP~~~~~V~~~a~~f~~l~~~V~~~lp~lLl~~M~~l~~~~~~~~~~~~~~~~~~~~l~~lr~~ak~l~~fA  605 (613)
T PF04097_consen  526 DIIEKLDLIPLDPSEVRRCAENFRQLDDEVRRNLPDLLLAAMDCLSRLYQRLKTSSYGSSSRQQQLDELREKAKALMTFA  605 (613)
T ss_dssp             HHHHHTT-S-S-HHHHHHHHHCGCCS-HHHHTTHHHHHHHHHHHHHHHHHHHHSTT---TTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998766           23578999999987  99


Q ss_pred             hhcccCCC
Q 039467          669 NNMNQNWP  676 (687)
Q Consensus       669 g~i~y~~P  676 (687)
                      |||+||||
T Consensus       606 g~i~yrmP  613 (613)
T PF04097_consen  606 GMIPYRMP  613 (613)
T ss_dssp             HHGCCCS-
T ss_pred             HhcCCCCC
Confidence            99999999

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04121 Nup84_Nup100: Nuclear pore protein 84 / 107 ; InterPro: IPR007252 Nup84p forms a complex with five proteins, including Nup120p, Nup85p, Sec13p, and a Sec13p homolog Back     alignment and domain information
>KOG1964 consensus Nuclear pore complex, rNup107 component (sc Nup84) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query687
2qx5_A661 Structure Of Nucleoporin Nic96 Length = 661 1e-08
2rfo_A651 Crystral Structure Of The Nucleoporin Nic96 Length 1e-08
>pdb|2QX5|A Chain A, Structure Of Nucleoporin Nic96 Length = 661 Back     alignment and structure 
Iteration: 1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 156/356 (43%), Gaps = 63/356 (17%)
Query: 64  LLEKKATVYAEVVKNLNNARQQGLPFKPATAFKGAYESLAIESSSGKSVNIQKI--WHLL 121
           +L +K   YA +V   NN+RQ    F  A  F      ++I SS+  + N Q +  W +L
Sbjct: 29  ILREKFENYARIVFQFNNSRQANGNFDIANEF------ISILSSANGTRNAQLLESWKIL 82
Query: 122 QTMMGEHATVQQTASRKMSLVIGARRHLEWGHEKYIMDTIQSHPAQAALGGVVGNLQRVR 181
           ++M           S+ +++V   +++LE    +Y  +  + +  +    G+  N+ +++
Sbjct: 83  ESM----------KSKDINIVEVGKQYLEQQFLQYTDNLYKKNMNE----GLATNVNKIK 128
Query: 182 AFLRIRLR----DYGVLDFDIGDTRRQPPVDTTWQQIYFCLRTGYYDEARNVALSSRAS- 236
           +F+  +L+     + + +  + +     P+   W  I++ LR G   EA  V + ++A+ 
Sbjct: 129 SFIDTKLKKADKSWKISNLTVING---VPI---WALIFYLLRAGLIKEALQVLVENKANI 182
Query: 237 ----NQFAPLLTEWINTGGM-VPPEIAAAASEECDKMLRMGDRVGRAAYDKKKLLLYAII 291
                 F      + ++    +P E +     E ++ ++          D  +L +Y +I
Sbjct: 183 KKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIK-----SSLDGDPYRLAVYKLI 237
Query: 292 SGSRRQIDRLLRDLPTLFSTIEDFLWFKLSAIRDVPSEAPSVVLSDGLAPYSLDDLQVYL 351
              R  + R  +++P +  +IED+LW  L  I++  +E   V        YSL+D Q  +
Sbjct: 238 G--RCDLSR--KNIPAVTLSIEDWLWMHLMLIKEKDAENDPVY-----ERYSLEDFQNII 288
Query: 352 NKFDPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKESGDEGYNIDAAHISIVLA 407
             + PS ++        Y   LLLS     A+ Y    S      +DA H++I LA
Sbjct: 289 ISYGPSRFSN------YYLQTLLLSGLYGLAIDYTYTFS-----EMDAVHLAIGLA 333
>pdb|2RFO|A Chain A, Crystral Structure Of The Nucleoporin Nic96 Length = 651 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query687
2qx5_A661 Nucleoporin NIC96; mRNA transport, nuclear pore co 1e-111
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A Length = 661 Back     alignment and structure
 Score =  349 bits (896), Expect = e-111
 Identities = 130/708 (18%), Positives = 257/708 (36%), Gaps = 109/708 (15%)

Query: 35  PGQMASMASSPQISSGPSGMELVPLANKPLLEKKATVYAEVVKNLNNARQQGLPFKPATA 94
           PG    + +    +   S    + +    +L +K   YA +V   NN+RQ    F  A  
Sbjct: 1   PGSEFELGNKGN-NILNSNESRLNVNENNILREKFENYARIVFQFNNSRQANGNFDIANE 59

Query: 95  FKGAYESLAIESSSGKSVNIQKIWHLLQTMMGEHATVQQTASRKMSLVIGARRHLEWGHE 154
           F     S    ++  ++  + + W +L++M  +           +++V   +++LE    
Sbjct: 60  FISILSS----ANGTRNAQLLESWKILESMKSK----------DINIVEVGKQYLEQQFL 105

Query: 155 KYIMDTIQSHPAQAALGGVVGNLQRVRAFLRIRL-RDYGVLDFDIGDTRRQPPVDTTWQQ 213
           +Y  +  + +       G+  N+ ++++F+  +L +                P+   W  
Sbjct: 106 QYTDNLYKKNMN----EGLATNVNKIKSFIDTKLKKADKSWKISNLTVINGVPI---WAL 158

Query: 214 IYFCLRTGYYDEARNVALSSRAS-----NQFAPLLTEWINTG-GMVPPEIAAAASEECDK 267
           I++ LR G   EA  V + ++A+       F      + ++    +P E +     E ++
Sbjct: 159 IFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQ 218

Query: 268 MLRMGDRVGRAAYDKKKLLLYAIISGSRRQIDRLLRDLPTLFSTIEDFLWFKLSAIRDVP 327
            ++          D  +L +Y +I       D   +++P +  +IED+LW  L  I++  
Sbjct: 219 HIK-----SSLDGDPYRLAVYKLIGR----CDLSRKNIPAVTLSIEDWLWMHLMLIKEKD 269

Query: 328 SEAPSVVLSDGLAPYSLDDLQVYLNKFDPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLS 387
           +E   V        YSL+D Q  +  + PS ++        Y   LLLS     A+ Y  
Sbjct: 270 AENDPV-----YERYSLEDFQNIIISYGPSRFSN------YYLQTLLLSGLYGLAIDYTY 318

Query: 388 KESGDEGYNIDAAHISIVLADHGM---------------------ALEYY------AQAA 420
                    +DA H++I LA   +                      L  Y      +   
Sbjct: 319 -----TFSEMDAVHLAIGLASLKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDPR 373

Query: 421 AAVGGGQLSWTGRANVDQQRQKSLMLKQLLTELLLRDGGIYLLLG---SRGAGEEGELGR 477
            AV    L        D +     +  + L EL+L      +LLG     GA   G +  
Sbjct: 374 VAVEYLVLITLNEGPTDVE-----LCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEE 428

Query: 478 YITDLKAR------QQFLLEAAGQCQEAGLYDKSIELQKRVGAFSMALDTINKCLSEAIF 531
               L  R           +AA +  E G    SI L +    + + +  +N  LS+ + 
Sbjct: 429 RQPLLHVRDEKEFLHTITEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLS 488

Query: 532 AMSRGRLDGESQTASLIHSGNEILEMEKYYPEVSLHEREQVLEQQTVLRQLEAILSVHKM 591
           A    +        S  +       M   Y + +   R+  ++ + +   L  I S+ ++
Sbjct: 489 ASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIREL 548

Query: 592 ARSGHYLDALREVAKLPFLPF-DPRVPDAMVDVFQSLSPHVQACVPDLLRVALTCLDNV- 649
             +  + + L ++  L  LPF D          F +L  ++   +P+LL + L+C+ N+ 
Sbjct: 549 YFNKQWQETLSQMELLDLLPFSDELSARKKAQDFSNLDDNIVKNIPNLLIITLSCISNMI 608

Query: 650 ----------TDTDGSLRAMRAKIANFL--ANNMNQNWPRDLYERVAR 685
                     +     + +++      +  A  +    PR+ Y  +  
Sbjct: 609 HILNESKYQSSTKGQQIDSLKNVARQCMIYAGMIQYRMPRETYSTLIN 656
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query687
2qx5_A661 Nucleoporin NIC96; mRNA transport, nuclear pore co 100.0
3iko_C460 Nucleoporin NUP84; NPC, transport, WD repeat, auto 95.73
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A Back     alignment and structure
Probab=100.00  E-value=4.2e-128  Score=1109.37  Aligned_cols=572  Identities=21%  Similarity=0.330  Sum_probs=453.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhhhhccCCCCcccHHHHHHHHHHhhcCCcchhhhHHHHHH
Q 039467           61 NKPLLEKKATVYAEVVKNLNNARQQGLPFKPATAFKGAYESLAIESSSGKSVNIQKIWHLLQTMMGEHATVQQTASRKMS  140 (687)
Q Consensus        61 ~~~~l~~k~~~Ya~~V~~lN~~r~~~~~~~l~~~f~~a~~~~~~~~~~~~~~~i~~~W~~l~~~~~e~~~~~~~~~~~~~  140 (687)
                      .++.|++||++||++|++||++|++|.+||++++|++++++++    +.++.+|.|+|++|++|+          +++++
T Consensus        26 ~~~~l~~k~~~Ya~~I~~~N~~r~~~~~~~l~~~f~~~~~~~~----~~~~~~l~d~W~~l~~m~----------~~~~~   91 (661)
T 2qx5_A           26 ENNILREKFENYARIVFQFNNSRQANGNFDIANEFISILSSAN----GTRNAQLLESWKILESMK----------SKDIN   91 (661)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCC----SHHHHHHHHHHHHHHTTT----------TSCCC
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcC----CcchhHHHHHHHHHHHHH----------HHHHH
Confidence            4669999999999999999999999999999999999988653    445679999999999997          36779


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhhhhcCCCCCchHHHHHHHHHhhccCC-cccccCCcccCCCCCCCcHHHHHHHHh
Q 039467          141 LVIGARRHLEWGHEKYIMDTIQSHPAQAALGGVVGNLQRVRAFLRIRLRDYG-VLDFDIGDTRRQPPVDTTWQQIYFCLR  219 (687)
Q Consensus       141 iv~gsr~yLE~qf~~~v~~~I~~~p~~A~lGG~P~~~~~V~afl~v~~~~~g-~~~~~~~~~~~~~p~~~vWa~IyYlLR  219 (687)
                      +|+|||+|||+||++||+++|.+||.+    |+|+++++|+|||++++++++ .|+.+.++.+++.|   +||+||||||
T Consensus        92 ~v~gar~~LE~qf~~~~~~~i~~n~~~----G~p~~~~~V~afv~~~~~~~~~~~~~~~~~~v~g~p---~Wa~IyY~LR  164 (661)
T 2qx5_A           92 IVEVGKQYLEQQFLQYTDNLYKKNMNE----GLATNVNKIKSFIDTKLKKADKSWKISNLTVINGVP---IWALIFYLLR  164 (661)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCC----SCSCHHHHHHHHHHHSSBCSSSCBSSTTCCEETTEE---HHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcCc----CCCChHHHHHHHHHHHhcccCCccCCCcccccCCcc---cHHHHHHHHh
Confidence            999999999999999999999999988    999999999999999998776 46656666666666   9999999999


Q ss_pred             cCCHHHHHHHHHhccC-----CccHHHHHHHHHhC-CCCCCHHHHHHhhHHHHHhhhhcccCCCCccchHHHHHHHHHhC
Q 039467          220 TGYYDEARNVALSSRA-----SNQFAPLLTEWINT-GGMVPPEIAAAASEECDKMLRMGDRVGRAAYDKKKLLLYAIISG  293 (687)
Q Consensus       220 ~G~~~eA~e~~~~~~~-----~~~F~~~l~~y~~s-~~~L~~~~~~~~~~e~~q~~r~~d~~~~~~~DPyK~AvY~iig~  293 (687)
                      ||+++||++++++++.     +++|++|+++|+++ +++||++++++++.||+|++|+     ....||||+|||||||+
T Consensus       165 ~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~-----~~~~DpyK~AvY~Iig~  239 (661)
T 2qx5_A          165 AGLIKEALQVLVENKANIKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKS-----SLDGDPYRLAVYKLIGR  239 (661)
T ss_dssp             TTCHHHHHHHHHHTGGGC-----CHHHHHHHC-----------------------------------CHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHhc
Confidence            9999999999999864     27999999999966 4799999999999999999884     23489999999999999


Q ss_pred             CccchhhhhcCchhhhcchhHHHHhhhhccccCCCCCCcccccCCCCcccHHHHHHHHHhcCccccccCCCCCcchHHHH
Q 039467          294 SRRQIDRLLRDLPTLFSTIEDFLWFKLSAIRDVPSEAPSVVLSDGLAPYSLDDLQVYLNKFDPSYYTKNGKDPLVYPYVL  373 (687)
Q Consensus       294 cd~~~~~~~~~~~~V~~tiEDwLWlqL~lvre~~~~~~~~~~~~~~~~ytL~~LQ~~i~~~Ge~~F~~~~~~p~~yf~vL  373 (687)
                      ||++    ++++|+|+.||||||||||+++|+++.++++     +.+.|||++||+.|.+|||+||++      +||++|
T Consensus       240 cD~~----~~~~~~v~~siED~LWl~L~lvre~~~~~~~-----~~e~ytL~~LQ~~I~~yGe~~F~~------lYf~vL  304 (661)
T 2qx5_A          240 CDLS----RKNIPAVTLSIEDWLWMHLMLIKEKDAENDP-----VYERYSLEDFQNIIISYGPSRFSN------YYLQTL  304 (661)
T ss_dssp             CCGG----GCCCGGGCCSHHHHHHHHHHTCCC---------------CCCHHHHHHHHHHHCGGGGTT------CHHHHH
T ss_pred             cccc----ccchHHHhccHHHHHHHHHHhccCCCccccc-----ccccccHHHHHHHHHHhhhhhhhh------HHHHHH
Confidence            9874    5778899999999999999999998764422     236899999999999999999975      799999


Q ss_pred             HHhhcHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhHH---------------------HHHH------HHHhhhcCC
Q 039467          374 LLSIQLLPAVLYLSKESGDEGYNIDAAHISIVLADHGMAL---------------------EYYA------QAAAAVGGG  426 (687)
Q Consensus       374 lLsgqFE~AI~~L~~~~~~~~~~vdAVH~AIaL~~~gla~---------------------~Y~~------~~~~~~~~~  426 (687)
                      +||||||+||+||+++     +++|||||||||+|||++-                     ..|+      ....|+.|.
T Consensus       305 lLtgqFE~AI~~L~~~-----~~vdAVH~AIaL~~~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~Al~Y~  379 (661)
T 2qx5_A          305 LLSGLYGLAIDYTYTF-----SEMDAVHLAIGLASLKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVAVEYL  379 (661)
T ss_dssp             HHTTCHHHHHHHHHTT-----CHHHHHHHHHHHHHTTC-----------------CHHHHHHHHHTTTTTTCHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHhc-----CchhHHHHHHHHHHcCCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCHHHHHHHH
Confidence            9999999999999997     9999999999999999521                     1111      111122221


Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHhhcCcceeecc---cCCCCCCccccccCCh-----HH-HHHHHHHHHHHHH
Q 039467          427 QLSWTGRANVDQQRQKSLMLKQLLTELLLRDGGIYLLLGS---RGAGEEGELGRYITDL-----KA-RQQFLLEAAGQCQ  497 (687)
Q Consensus       427 ~l~~~~r~~~d~~~~~~~~~~~~l~eLvletref~~LLG~---dG~r~~G~I~~~l~d~-----~~-~~~~i~~aA~~ae  497 (687)
                         |++|.+ ++..|.+ +||+||+|||+|||+|++|||+   ||+|++|+|++|.+++     ++ .++++.+||++|+
T Consensus       380 ---~li~l~-~g~~~~~-~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~aA~~ae  454 (661)
T 2qx5_A          380 ---VLITLN-EGPTDVE-LCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQAARRAD  454 (661)
T ss_dssp             ---HGGGGS-CCHHHHH-HHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHhcc-CCchHHH-HHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHHHHHHHH
Confidence               233333 2233566 8899999999999999999994   9999999999987632     22 4556678999999


Q ss_pred             HcCChhhHHHHHHHhhchHHHHHHHHHHHHHHHhhhc--CCCCCcc-ccchhHHHHHHHHHHHHhcCCCcchhhhHHHHh
Q 039467          498 EAGLYDKSIELQKRVGAFSMALDTINKCLSEAIFAMS--RGRLDGE-SQTASLIHSGNEILEMEKYYPEVSLHEREQVLE  574 (687)
Q Consensus       498 ~~Gr~~dAi~LY~La~~yd~vl~lln~~Ls~~ls~~~--~~~~~~~-~~~~~l~~~a~~i~~~y~~~~~~s~~~~~~~~~  574 (687)
                      ++|+++|||+||||||+||+||+++|++||++|++++  .+....+ ...++++.+|++|.++|..++.++.+.+.+.. 
T Consensus       455 ~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~-  533 (661)
T 2qx5_A          455 EDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHVKNK-  533 (661)
T ss_dssp             HTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCHHHH-
T ss_pred             HCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccHHHH-
Confidence            9999999999999999999999999999999999875  3322222 12467999999999999987654444444444 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhCCCcccCC-CCChHHHHHHhccCChhHHHhhhHHHHHHHHHhHhhhcc-
Q 039467          575 QQTVLRQLEAILSVHKMARSGHYLDALREVAKLPFLPFD-PRVPDAMVDVFQSLSPHVQACVPDLLRVALTCLDNVTDT-  652 (687)
Q Consensus       575 ~~~~l~~Ll~l~~f~~~~~~~~~~~AL~~i~~L~ilPl~-~~~v~~~a~~f~~l~~~V~~~iP~lLl~~m~cl~~~~~~-  652 (687)
                        .+|.+|++|++||++||+|+|++||++|++|+|||++ ..++++||++|+++|++|++|+|+||+|+|+||+++.++ 
T Consensus       534 --~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llPl~d~~~i~~~a~~f~~l~~~V~~~lP~lLl~aM~~l~~~~~~l  611 (661)
T 2qx5_A          534 --EICMLLLNISSIRELYFNKQWQETLSQMELLDLLPFSDELSARKKAQDFSNLDDNIVKNIPNLLIITLSCISNMIHIL  611 (661)
T ss_dssp             --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSCC-----CHHHHHHGGGSCHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCCCchHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              3556799999999999999999999999999999999 455679999999999999999999999999999998643 


Q ss_pred             ------ch----hHHHHHHHHHHH--HHhhcccCCChHHHHHHHhh
Q 039467          653 ------DG----SLRAMRAKIANF--LANNMNQNWPRDLYERVARS  686 (687)
Q Consensus       653 ------~~----~~~~l~~~~~~~--~ag~i~y~~P~~~~~~la~~  686 (687)
                            ++    .++.+|++++++  |||||+||||+++|++|+|+
T Consensus       612 ~~~~~~~~~~~~~~~~lr~~ak~l~~~Ag~i~yrmP~~~~~~L~~l  657 (661)
T 2qx5_A          612 NESKYQSSTKGQQIDSLKNVARQCMIYAGMIQYRMPRETYSTLINI  657 (661)
T ss_dssp             HSTTCCCTTHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHCC
T ss_pred             hcCCCccchhHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence                  22    356899999998  99999999999999999985
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00