Citrus Sinensis ID: 039489

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
Protein Sequence
MVPPAGTPPPNPQQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYSQRRPSPSPNSSPNPNPSHNQSNPAVMSNYGPSPSPQARPQPARPFPPSPYGGRPQPQPQTEDQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDILE
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccccEEEccccccEEEEEEEEEEEEcccccccccEEEEEEcccccccccEEEEccccccccccccccccccccEEcccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccccccEEEEcccccEEEEEEccEEEEEEcccEEccEEEEEEcccccccccEEEEEccccEEEEccccccccccEEEcccHHccccccccHHHHHHHHHHHHcccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcc
Coil and Loop (DISEMBL)
mvppagtpppnpqQIQQFLSSVlsqrgpsalpyaedTKWLIRQHLLTLIstfpsldpktatfthndgrsvnllqadgtvpmpfqgvtynIPVIIWLMesyprhppcvyvnptrdmiikrphphvtpsglvsipylqnwiypssNLVDLVRELSacfsrepplysqrrpspspnsspnpnpshnqsnpavmsnygpspspqarpqparpfppspyggrpqpqpqtedqtEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDILE
Flexible Loop (DISEMBL)
mvppagtpppnpQQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYSQRRPSPSPNSSPNPNPSHNQSNPAVMSNYGPSPSPQARPQPARPFPPSPYGGRPQPQPQTEDQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDILE
Low Complexity Region (SEG)
MVppagtpppnpQQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYsqrrpspspnsspnpnpshnqsnpAVMSNYGpspspqarpqparpfppspYGGRpqpqpqTEDQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDILE
Disordered region (IsUnstruct)
******************************LPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACF****************************************************************************RNAVNKLVEMVHADITGMRKAREVEVEGLFSTQAL*************************************
Disordered Region (DISOPRED)
****************QFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPL************************************************************************************************************************************IVLM******
Disordered Region (DISEMBL)
************QQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREP***********************QSNPAVMSN**************RPFPPSP***************EVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDILE
Disordered Region (DISPRO)
*********PNPQQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYSQR************************************************************QTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVPPAGTPPPNPQQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYSQRRPSPSPNSSPNPNPSHNQSNPAVMSNYGPSPSPQARPQPARPFPPSPYGGRPQPQPQTEDQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRRxxxxxxxxxxxxxxxxxxxxxxxxxxxxSDILE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	304	2.2.26 [Sep-21-2011]
Q9LHG8	398	Protein ELC OS=Arabidopsi	yes	no	0.924	0.706	0.652	1e-104
Q9FFY6	368	Protein ELC-like OS=Arabi	no	no	0.858	0.709	0.641	1e-101
Q6IRE4	391	Tumor susceptibility gene	yes	no	0.828	0.644	0.282	5e-25
Q61187	391	Tumor susceptibility gene	yes	no	0.855	0.664	0.279	2e-24
Q99816	390	Tumor susceptibility gene	yes	no	0.861	0.671	0.275	2e-23
Q66KB7	476	Ubiquitin-conjugating enz	no	no	0.407	0.260	0.424	3e-23
Q3U1V6	471	Ubiquitin-conjugating enz	no	no	0.371	0.239	0.403	1e-19
Q8IX04	471	Ubiquitin-conjugating enz	no	no	0.368	0.237	0.398	5e-19
Q6DBY5	471	Ubiquitin-conjugating enz	no	no	0.375	0.242	0.365	2e-18
Q54LJ3	478	ESCRT-I complex subunit t	yes	no	0.407	0.259	0.338	1e-11

>sp|Q9LHG8|ELC_ARATH Protein ELC OS=Arabidopsis thaliana GN=ELC PE=1 SV=1

 Score =  379 bits (974), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/319 (65%), Positives = 243/319 (76%), Gaps = 38/319 (11%)

Query: 1   MVPPAGTPPPNPQQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTA 60
           MVPP    P NPQQ+QQFLSS LSQRGPS++PY E  KWLIRQHLL LIS++PSL+PKTA
Sbjct: 1   MVPP----PSNPQQVQQFLSSALSQRGPSSVPYEESNKWLIRQHLLNLISSYPSLEPKTA 56

Query: 61  TFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP 120
           +F HNDGRSVNLLQADGT+PMPF GVTYNIPVIIWL+ESYPRHPPCVYVNPT DMIIKRP
Sbjct: 57  SFMHNDGRSVNLLQADGTIPMPFHGVTYNIPVIIWLLESYPRHPPCVYVNPTADMIIKRP 116

Query: 121 HPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYSQRRPSPSP-------N 173
           H HVTPSGLVS+PYLQNW+YPSSNLVDLV +LSA F+R+PPLYS+RRP P P       +
Sbjct: 117 HAHVTPSGLVSLPYLQNWVYPSSNLVDLVSDLSAAFARDPPLYSRRRPQPPPPSPPTVYD 176

Query: 174 SSPNPNPSHNQSNPAVMSNYGPSPSPQARPQPARPFPPSPYGG--------RPQPQPQTE 225
           SS +  PS +QS P                   RPFPPSPYGG            Q Q++
Sbjct: 177 SSLSRPPSADQSLP-------------------RPFPPSPYGGGVSRVQVQHVHHQQQSD 217

Query: 226 DQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDE 285
           D  EVFKRNA+NK+VEMVH+D+  MR+ARE E E L S QA L+RRE+E++ GLKE+ +E
Sbjct: 218 DAAEVFKRNAINKMVEMVHSDLVSMRRAREAEAEELLSLQAGLKRREDELNIGLKEMVEE 277

Query: 286 REGLEQQLQIVLMNSDILE 304
           +E LEQQLQI+ MN+DIL+
Sbjct: 278 KETLEQQLQIISMNTDILD 296

Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs) Mediates the association to the ESCRT-0 complex. May control nuclear division through the microtubule cytoskeleton.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFY6|ELCL_ARATH Protein ELC-like OS=Arabidopsis thaliana GN=ELCL PE=1 SV=1

 Score =  367 bits (941), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/296 (64%), Positives = 224/296 (75%), Gaps = 35/296 (11%)

Query: 8   PPPNPQQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDG 67
           PP   Q+I QFLSS L+QRGPSALPYAE+TK LIRQHLL LIS++ SLDPKTATFTHNDG
Sbjct: 4   PPAKMQEIHQFLSSALTQRGPSALPYAENTKSLIRQHLLNLISSYTSLDPKTATFTHNDG 63

Query: 68  RSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPS 127
           RSV LLQADGT+PMPFQGV+YNIPV+IWL+ESYP++PPCVYVNPTRDMIIKRPH +V+PS
Sbjct: 64  RSVILLQADGTIPMPFQGVSYNIPVVIWLLESYPQYPPCVYVNPTRDMIIKRPHSNVSPS 123

Query: 128 GLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYSQRRPSPSPNSSPNPNPSHNQSNP 187
           GLVS+PYLQNWIYPSSNLVDL   LSA FSR+PPLYSQRRP P               +P
Sbjct: 124 GLVSLPYLQNWIYPSSNLVDLASHLSAAFSRDPPLYSQRRPPPQ-------------PSP 170

Query: 188 AVMSNYGPSPSPQARPQPARPFPPSPYGGRPQPQPQTEDQTEVFKRNAVNKLVEMVHADI 247
           ++ S Y            +RP PP           QT+D  EV+K+NA+N++VEMVH DI
Sbjct: 171 SIGSGY------------SRPLPPR----------QTDDAAEVYKKNAINRIVEMVHGDI 208

Query: 248 TGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDIL 303
             MR AREVE EGL S Q+ L+RREEEI+ G KE+  E+E LEQQLQ++ MN+D+L
Sbjct: 209 VLMRSAREVETEGLLSLQSDLKRREEEINNGFKEMVIEKETLEQQLQVIAMNTDVL 264

Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs). Mediates the association to the ESCRT-0 complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6IRE4|TS101_RAT Tumor susceptibility gene 101 protein OS=Rattus norvegicus GN=Tsg101 PE=1 SV=1

 Score =  115 bits (287), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 141/287 (49%), Gaps = 35/287 (12%)

Query: 40  LIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMES 99
           L  +  + +I+ +  L P   ++  NDG S  L+   GT+P+ ++G  YNIP+ +WL+++
Sbjct: 20  LTVRQTVNVIAMYKDLKPVLDSYVFNDGSSRELVNLTGTIPVRYRGNIYNIPICLWLLDT 79

Query: 100 YPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSRE 159
           YP +PP  +V PT  M IK    HV  +G + +PYL +W +P S L++L++ +   F  E
Sbjct: 80  YPYNPPICFVKPTSSMTIK-TGKHVDANGKIYLPYLHDWKHPRSELLELIQIMIVIFGEE 138

Query: 160 PPLYSQRRPSPSPNSSPN-----PNPSHNQSNPAVMSNY--GPSPSPQARPQPARPF--- 209
           PP++S  RP+ S +  P      PN S+  S P+ +S Y  G  P+P   P    P    
Sbjct: 139 PPVFS--RPTVSASYPPYTAAGPPNTSYLPSMPSGISAYPSGYPPNPSGYPGCPYPPAGP 196

Query: 210 ------------PPSPYGGRPQPQPQTEDQTEVFKRNAVNKLVEMVHADITGMRKAREVE 257
                       PP    G  +    +ED               ++ A    +R   + E
Sbjct: 197 YPATTSSQYPSQPPVTTAGPSRDGTISEDTIR----------ASLISAVSDKLRWRMKEE 246

Query: 258 VEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDILE 304
           ++G  +    L+R EE++ +G ++L++    L+Q++  V  N ++L+
Sbjct: 247 MDGAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 293

Component of the ESCRT-I complex, a regulator of vesicular trafficking process. Binds to ubiquitinated cargo proteins and is required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs). Mediates the association between the ESCRT-0 and ESCRT-I complex. Required for completion of cytokinesis; the function requires CEP55. May be involved in cell growth and differentiation. Acts as a negative growth regulator.

Rattus norvegicus (taxid: 10116)

>sp|Q61187|TS101_MOUSE Tumor susceptibility gene 101 protein OS=Mus musculus GN=Tsg101 PE=1 SV=2

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 140/279 (50%), Gaps = 19/279 (6%)

Query: 40  LIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMES 99
           L  +  + +I+ +  L P   ++  NDG S  L+   GT+P+ ++G  YNIP+ +WL+++
Sbjct: 20  LTVRQTVNVIAMYKDLKPVLDSYVFNDGSSRELVNLTGTIPVRYRGNIYNIPICLWLLDT 79

Query: 100 YPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSRE 159
           YP +PP  +V PT  M IK    HV  +G + +PYL +W +P S L++L++ +   F  E
Sbjct: 80  YPYNPPICFVKPTSSMTIK-TGKHVDANGKIYLPYLHDWKHPRSELLELIQIMIVIFGEE 138

Query: 160 PPLYSQRRPSPSPNSSPN-----PNPSHNQSNPAVMSNY--GPSPSPQARP-------QP 205
           PP++S  RP+ S +  P      PN S+    P+ +S Y  G  P+P   P        P
Sbjct: 139 PPVFS--RPTVSASYPPYTATGPPNTSYMPGMPSGISAYPSGYPPNPSGYPGCPYPPAGP 196

Query: 206 ARPFPPSPYGGRPQPQPQTEDQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ 265
                 S Y  +P        +      + +     ++ A    +R   + E++G  +  
Sbjct: 197 YPATTSSQYPSQPPVTTVGPSRDGTISEDTIR--ASLISAVSDKLRWRMKEEMDGAQAEL 254

Query: 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDILE 304
             L+R EE++ +G ++L++    L+Q++  V  N ++L+
Sbjct: 255 NALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 293

Component of the ESCRT-I complex, a regulator of vesicular trafficking process. Binds to ubiquitinated cargo proteins and is required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs). Mediates the association between the ESCRT-0 and ESCRT-I complex. Required for completion of cytokinesis; the function requires CEP55. May be involved in cell growth and differentiation. Acts as a negative growth regulator.

Mus musculus (taxid: 10090)

>sp|Q99816|TS101_HUMAN Tumor susceptibility gene 101 protein OS=Homo sapiens GN=TSG101 PE=1 SV=2

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 138/276 (50%), Gaps = 14/276 (5%)

Query: 40  LIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMES 99
           L  +  + +I+ +  L P   ++  NDG S  L+   GT+P+P++G TYNIP+ +WL+++
Sbjct: 20  LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDT 79

Query: 100 YPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSRE 159
           YP +PP  +V PT  M IK    HV  +G + +PYL  W +P S+L+ L++ +   F  E
Sbjct: 80  YPYNPPICFVKPTSSMTIKTGK-HVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDE 138

Query: 160 PPLYSQRRPSPSP--NSSPNPNPSHNQSNPAVM----SNYGPSPS-----PQARPQPARP 208
           PP++S+   +  P   ++  PN S+    P  +    S Y P+PS     P     P   
Sbjct: 139 PPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYPA 198

Query: 209 FPPSPYGGRPQPQPQTEDQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALL 268
              S Y  +P        +      + +     ++ A    +R   + E++   +    L
Sbjct: 199 TTSSQYPSQPPVTTVGPSRDGTISEDTIR--ASLISAVSDKLRWRMKEEMDRAQAELNAL 256

Query: 269 RRREEEIDRGLKELQDEREGLEQQLQIVLMNSDILE 304
           +R EE++ +G ++L++    L+Q++  V  N ++L+
Sbjct: 257 KRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 292

Component of the ESCRT-I complex, a regulator of vesicular trafficking process. Binds to ubiquitinated cargo proteins and is required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs). Mediates the association between the ESCRT-0 and ESCRT-I complex. Required for completion of cytokinesis; the function requires CEP55. May be involved in cell growth and differentiation. Acts as a negative growth regulator. Involved in the budding of many viruses through an interaction with viral proteins that contain a late-budding motif P-[ST]-A-P. This interaction is essential for viral particle budding of numerous retroviruses.

Homo sapiens (taxid: 9606)

>sp|Q66KB7|UEVLD_XENTR Ubiquitin-conjugating enzyme E2 variant 3 OS=Xenopus tropicalis GN=uevld PE=2 SV=1

 Score =  109 bits (272), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 74/125 (59%), Gaps = 1/125 (0%)

Query: 40  LIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMES 99
           L  + L  L  TFPS      T+T  DG   +LL   GTVPM  QG TYNIP+ +W+++S
Sbjct: 20  LTIEELKDLNRTFPSFIFSMETYTFRDGSQKDLLNLTGTVPMKHQGTTYNIPICLWILDS 79

Query: 100 YPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSRE 159
           +P  PP  ++ P+ +M I R   H+   G + +PYLQNW +P S +  L+RE++  F  E
Sbjct: 80  HPFAPPLCFLKPSGNMGI-RVGRHIDAQGRIYLPYLQNWSHPKSTVTGLIREMAVKFEEE 138

Query: 160 PPLYS 164
            PLYS
Sbjct: 139 LPLYS 143

Possible negative regulator of polyubiquitination.

Xenopus tropicalis (taxid: 8364)

>sp|Q3U1V6|UEVLD_MOUSE Ubiquitin-conjugating enzyme E2 variant 3 OS=Mus musculus GN=Uevld PE=2 SV=1

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 1/114 (0%)

Query: 51  TFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVN 110
           +FP       T+   D    +LL   GT+P+ +QG TYNIP+  W+++S+P  PP  ++ 
Sbjct: 31  SFPHFRYSVDTYVFKDTSQKDLLNFTGTIPVMYQGKTYNIPIRFWILDSHPFAPPICFLK 90

Query: 111 PTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYS 164
           PT +M I     HV   G + +PYLQNW +P S +V L++E+ A F  E PLYS
Sbjct: 91  PTANMEISVG-KHVDAKGRIYLPYLQNWSHPKSAIVGLIKEMIAKFQEELPLYS 143

Possible negative regulator of polyubiquitination.

Mus musculus (taxid: 10090)

>sp|Q8IX04|UEVLD_HUMAN Ubiquitin-conjugating enzyme E2 variant 3 OS=Homo sapiens GN=UEVLD PE=1 SV=2

 Score = 95.5 bits (236), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 1/113 (0%)

Query: 52  FPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNP 111
           FP       T+   D    +LL   GT+P+ +QG TYNIP+  W+++S+P  PP  ++ P
Sbjct: 32  FPHFKYSMDTYVFKDSSQKDLLNFTGTIPVMYQGNTYNIPIRFWILDSHPFAPPICFLKP 91

Query: 112 TRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYS 164
           T +M I     HV   G + +PYLQNW +P S +V L++E+ A F  E P+YS
Sbjct: 92  TANMGI-LVGKHVDAQGRIYLPYLQNWSHPKSVIVGLIKEMIAKFQEELPMYS 143

Possible negative regulator of polyubiquitination.

Homo sapiens (taxid: 9606)

>sp|Q6DBY5|UEVLD_DANRE Ubiquitin-conjugating enzyme E2 variant 3 OS=Danio rerio GN=uevld PE=2 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 69/115 (60%), Gaps = 1/115 (0%)

Query: 51  TFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVN 110
            +P +     T+T +D    +LL+  G +P+ +QG +YNIP+++WL++S+P  PP  Y+ 
Sbjct: 31  VYPDMKIMAGTYTSSDSLQKDLLKLVGNIPVVYQGRSYNIPILLWLLDSFPFTPPICYLR 90

Query: 111 PTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYSQ 165
           PT  M+I R   HV   G + +P L NW +P S++  L+ E+   F  EPPL ++
Sbjct: 91  PTSSMVI-REGKHVDSKGRIHLPALHNWDHPKSSVNALLAEMIGKFEEEPPLGTK 144

Possible negative regulator of polyubiquitination.

Danio rerio (taxid: 7955)

>sp|Q54LJ3|TS101_DICDI ESCRT-I complex subunit tsg101 OS=Dictyostelium discoideum GN=tsg101 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 15/139 (10%)

Query: 1   MVPPAGTPPPNPQQ-IQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKT 59
           MV P      N    +  FL+ + + R P  L  ++D K     HL      FP+L P  
Sbjct: 16  MVNPTLAIVDNKMHTLSTFLNYIRAYRDP--LRISKDLKETF--HL------FPNLSP-- 63

Query: 60  ATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR 119
             F  N    VNL+   GT+P+ F+G+ Y +P+I+W+  +YP+  P + ++PT +M I +
Sbjct: 64  --FYENIPNRVNLICIKGTIPICFKGINYYLPIIVWVPLNYPQEFPTMVLDPTPEMRIVK 121

Query: 120 PHPHVTPSGLVSIPYLQNW 138
            H HV   GLV  PY+ +W
Sbjct: 122 NHHHVNLQGLVYHPYISSW 140

Component of the ESCRT-I complex, a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies. May be involved in cell growth and differentiation. Acts as a negative growth regulator.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
449458704	422	PREDICTED: protein ELC-like [Cucumis sat	0.953	0.687	0.708	1e-117
255569189	419	protein with unknown function [Ricinus c	0.967	0.701	0.71	1e-117
118489418	403	unknown [Populus trichocarpa x Populus d	0.976	0.736	0.697	1e-112
224057212	380	predicted protein [Populus trichocarpa]	0.921	0.736	0.684	1e-112
225433571	425	PREDICTED: protein ELC [Vitis vinifera]	0.944	0.675	0.675	1e-107
357473965	411	Protein ELC [Medicago truncatula] gi|355	0.980	0.725	0.661	1e-103
297834038	397	ATELC [Arabidopsis lyrata subsp. lyrata]	0.927	0.710	0.665	1e-103
18399596	398	protein ELC [Arabidopsis thaliana] gi|75	0.924	0.706	0.652	1e-103
356538545	415	PREDICTED: protein ELC-like [Glycine max	0.953	0.698	0.634	1e-102
224073065	401	predicted protein [Populus trichocarpa]	0.967	0.733	0.632	1e-101

>gi|449458704|ref|XP_004147087.1| PREDICTED: protein ELC-like [Cucumis sativus] gi|449503309|ref|XP_004161938.1| PREDICTED: protein ELC-like [Cucumis sativus]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/305 (70%), Positives = 249/305 (81%), Gaps = 15/305 (4%)

Query: 13  QQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNL 72
           Q IQQFLSSVLSQRGPSALPY EDTKWLIRQHL+ L + FPSL P+TA+FTHNDGRSVNL
Sbjct: 16  QIIQQFLSSVLSQRGPSALPYTEDTKWLIRQHLVALTTAFPSLVPRTASFTHNDGRSVNL 75

Query: 73  LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSI 132
           LQ+DGTVPM FQG TYNIPV+IWLMESYPRHPPCVYVNPTRDMIIKRPHPHV PSG+VSI
Sbjct: 76  LQSDGTVPMSFQGATYNIPVVIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVNPSGMVSI 135

Query: 133 PYLQNWIYPSSNLVDLVRELSACFSREPPLYSQRRPSPSPNSSPNPNP------SHNQSN 186
           PYLQNWIYPSSNLV+LVR LS  F R+PPLYSQRRP+PSP+ SP+P+P        N  N
Sbjct: 136 PYLQNWIYPSSNLVELVRNLSVMFGRDPPLYSQRRPNPSPSPSPSPSPSPSSSFGRNSVN 195

Query: 187 PAVMSNYGPSPSPQARPQ-PARPFPPSPYGGR------PQPQPQTEDQTEVFKRNAVNKL 239
            ++ SN G +  P  RP  P R +PPSPYG         + QP TED  EVFKRNA+NKL
Sbjct: 196 SSIASNMGVAAFP--RPAIPPRAYPPSPYGSGNDIASIARMQPHTEDPNEVFKRNAINKL 253

Query: 240 VEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299
           VEMVH DI G+RK RE E+EGLFS Q +L++REE++++GLKE+QDE+E LEQQLQ+VLMN
Sbjct: 254 VEMVHNDIVGLRKTREAEMEGLFSAQGVLKQREEDLNKGLKEMQDEKEALEQQLQMVLMN 313

Query: 300 SDILE 304
           +D+LE
Sbjct: 314 TDVLE 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569189|ref|XP_002525563.1| protein with unknown function [Ricinus communis] gi|223535142|gb|EEF36822.1| protein with unknown function [Ricinus communis]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/300 (71%), Positives = 244/300 (81%), Gaps = 6/300 (2%)

Query: 11  NPQQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSV 70
           N Q  QQFLSSVLSQRGPS+LPY EDTKWLIRQHLL+LI+T+PSL+PKTATFTHNDGRSV
Sbjct: 13  NHQATQQFLSSVLSQRGPSSLPYIEDTKWLIRQHLLSLITTYPSLEPKTATFTHNDGRSV 72

Query: 71  NLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLV 130
           NLLQADGT+PMPFQGVTYNIP+I+WLMESYPRHPPCVYVNPTRDMIIKRPHPHV PSGLV
Sbjct: 73  NLLQADGTIPMPFQGVTYNIPIIMWLMESYPRHPPCVYVNPTRDMIIKRPHPHVNPSGLV 132

Query: 131 SIPYLQNWIYPSSNLVDLVRELSACFSREPPLYSQRRPSPSPNSSPNPNPSHNQSNPAVM 190
           S+PYLQNWIYPSSNLVDLVREL   F R+PPLYSQRRP  +PN +PNP+   N +N + +
Sbjct: 133 SVPYLQNWIYPSSNLVDLVRELGGVFGRDPPLYSQRRPQSNPNPNPNPSYVSNPANLSTL 192

Query: 191 SN------YGPSPSPQARPQPARPFPPSPYGGRPQPQPQTEDQTEVFKRNAVNKLVEMVH 244
           SN       GPS  P+  P       P    G       TED  EV+KRNA+NK+VE VH
Sbjct: 193 SNSSGFGSVGPSGYPRPPPPTMARPYPPSPYGGSGGGGGTEDAAEVYKRNAINKIVESVH 252

Query: 245 ADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDILE 304
            D+  +RKARE E+EGLFS QA+LRRREEEI++GLKE+QDE+EGLE QLQ+VLMN+D+LE
Sbjct: 253 GDVLQLRKAREAEMEGLFSAQAVLRRREEEINKGLKEMQDEKEGLEAQLQVVLMNTDVLE 312

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489418|gb|ABK96512.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/304 (69%), Positives = 245/304 (80%), Gaps = 7/304 (2%)

Query: 1   MVPPAGTPPPNPQQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTA 60
           MVPP    PPN Q IQQFLSSVLSQRGPSALPY EDTKWLIRQHL++L STFPSL+PKTA
Sbjct: 1   MVPP----PPNHQAIQQFLSSVLSQRGPSALPYTEDTKWLIRQHLVSLTSTFPSLEPKTA 56

Query: 61  TFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP 120
           TFTHNDGR+VNLLQADGTVPM F+ VTYNIPVIIWL+ESYPRHPPCVYVNPTRDM+IKR 
Sbjct: 57  TFTHNDGRTVNLLQADGTVPMTFESVTYNIPVIIWLIESYPRHPPCVYVNPTRDMVIKRS 116

Query: 121 HPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYSQRRPSPSPNSSPNPNP 180
           H  V PSGLV++PYLQNWIYPSSNLVDL RELS  F R+PPL+SQ RP PSPN S +PN 
Sbjct: 117 HSFVNPSGLVAVPYLQNWIYPSSNLVDLARELSMIFGRDPPLFSQ-RPRPSPNPSYHPNQ 175

Query: 181 SHNQSNPAVMSNYGPSPSPQARPQPARPFPPSPYGGRPQPQPQTEDQTEVFKRNAVNKLV 240
           S + +N +   + G S  P+   +P +  PPSP  G  + +  TED  EVFKRN +NKLV
Sbjct: 176 S-SLTNSSTFGSVG-SGYPRQMVRPPQYPPPSPPYGGGEGKAGTEDAAEVFKRNVINKLV 233

Query: 241 EMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS 300
           E VH D+  +RK RE E+E LFS QA+LRRREEEI++GLKE++DE EGLE QLQ+VLMN+
Sbjct: 234 ENVHGDMLLLRKTRESEMENLFSAQAVLRRREEEINKGLKEMRDEMEGLESQLQVVLMNT 293

Query: 301 DILE 304
           D+LE
Sbjct: 294 DVLE 297

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057212|ref|XP_002299175.1| predicted protein [Populus trichocarpa] gi|222846433|gb|EEE83980.1| predicted protein [Populus trichocarpa]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/304 (68%), Positives = 236/304 (77%), Gaps = 24/304 (7%)

Query: 1   MVPPAGTPPPNPQQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTA 60
           MVPP    PPN Q IQQFLSSVLSQRGPSALPY EDTKWLIRQHL++L STFPSL+PKTA
Sbjct: 1   MVPP----PPNHQAIQQFLSSVLSQRGPSALPYTEDTKWLIRQHLVSLTSTFPSLEPKTA 56

Query: 61  TFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP 120
           TFTHNDGR+VNLLQADGTVPM F+ VTYNIPVIIWL+ESYPRHPPCVYVNPTRDM+IKR 
Sbjct: 57  TFTHNDGRTVNLLQADGTVPMTFESVTYNIPVIIWLIESYPRHPPCVYVNPTRDMVIKRS 116

Query: 121 HPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYSQRRPSPSPNSSPNPNP 180
           H  V PSGLV++PYLQNWIYPSSNLVDL RELS  F R+PPL+SQ RP PSPN S +P  
Sbjct: 117 HSFVNPSGLVAVPYLQNWIYPSSNLVDLARELSMIFGRDPPLFSQ-RPRPSPNPSYHP-- 173

Query: 181 SHNQSNPAVMSNYGPSPSPQARPQPARPFPPSPYGGRPQPQPQTEDQTEVFKRNAVNKLV 240
             NQS+    S +G   S          +P      R   +  TED  EVFKRN +NKLV
Sbjct: 174 --NQSSLTNSSTFGSVGS---------GYP------RQMGKAGTEDAAEVFKRNVINKLV 216

Query: 241 EMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS 300
           E VH D+  +RK RE E+E LFS QA+LRRREEEI++GLKE++DE EGLE QLQ+VLMN+
Sbjct: 217 ENVHGDMLLLRKTRESEMENLFSAQAVLRRREEEINKGLKEMRDEMEGLESQLQVVLMNT 276

Query: 301 DILE 304
           D+LE
Sbjct: 277 DVLE 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433571|ref|XP_002271662.1| PREDICTED: protein ELC [Vitis vinifera]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/308 (67%), Positives = 244/308 (79%), Gaps = 21/308 (6%)

Query: 11  NPQQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSV 70
           NPQ  QQ+LSSVLSQRGPSALPYAED KWLIRQHLL+L   +PSL PKTAT+THNDGR+V
Sbjct: 19  NPQLTQQWLSSVLSQRGPSALPYAEDVKWLIRQHLLSLSENYPSLQPKTATYTHNDGRTV 78

Query: 71  NLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLV 130
           NLLQ+DGTVPM +  VTYNIP+IIWLMESYPRHPPCVYVNPTRDM+IKRPH HV PSG+V
Sbjct: 79  NLLQSDGTVPMLYLDVTYNIPIIIWLMESYPRHPPCVYVNPTRDMVIKRPHSHVNPSGMV 138

Query: 131 SIPYLQNWIYPSSNLVDLVRELSACFSREPPLYSQRRPSPSPNSSPNPNPSHNQSNPAVM 190
           SIPYL +W+YPSSNLVDL R LS  FSR+PPLYSQRRP+P+PN +PNPNP+ N       
Sbjct: 139 SIPYLHSWVYPSSNLVDLARNLSHVFSRDPPLYSQRRPNPNPNPNPNPNPNANY------ 192

Query: 191 SNYGPSP----SPQARPQ-PARPFPPSPYGGR---------PQPQPQTEDQTEVFKRNAV 236
            N+ P+P    +P  RP  P R +PPSPYG           P PQ  TED  EVF+RNAV
Sbjct: 193 -NFTPNPMMGAAPTVRPVIPPRAYPPSPYGSGSGTGGGRIPPSPQRHTEDPNEVFRRNAV 251

Query: 237 NKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296
           NKLVE +HAD+  +RK  E E+EG+F  Q +LR+REE++ RG+KELQDE+EGLEQQLQ+V
Sbjct: 252 NKLVESLHADVGVLRKTSEAEMEGMFGAQGVLRQREEQLSRGVKELQDEKEGLEQQLQMV 311

Query: 297 LMNSDILE 304
           LMN+D+LE
Sbjct: 312 LMNADVLE 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473965|ref|XP_003607267.1| Protein ELC [Medicago truncatula] gi|355508322|gb|AES89464.1| Protein ELC [Medicago truncatula]

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/313 (66%), Positives = 245/313 (78%), Gaps = 15/313 (4%)

Query: 1   MVPPAGTPPPNPQQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTA 60
           MVPP    PPNP+  QQFLSS+LSQRGPSALPY+EDTKWLIRQHLL+L++TFPSL+PKTA
Sbjct: 1   MVPP----PPNPE-TQQFLSSILSQRGPSALPYSEDTKWLIRQHLLSLLTTFPSLEPKTA 55

Query: 61  TFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP 120
           T+THNDGR+VNLLQADGT+PM +Q VTYNIP++IWLMESYPRHPP VYVNPTRDMIIK  
Sbjct: 56  TYTHNDGRAVNLLQADGTIPMTYQSVTYNIPIVIWLMESYPRHPPRVYVNPTRDMIIKHA 115

Query: 121 HPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYSQRRPSPSPNSSPNPNP 180
           HPHV PSGLVS+P+L NWIYPSSNLVDLV  LS  F R+PPLYSQRRP+P+PN   N N 
Sbjct: 116 HPHVNPSGLVSVPHLHNWIYPSSNLVDLVLALSLIFGRDPPLYSQRRPNPNPNPHQNHNH 175

Query: 181 SHNQSNPAVM-SNYGPSPSPQARPQPAR--------PFPPSPYGGRPQPQPQTEDQTEVF 231
           + N +      SN+G +P P     P R         +PPSPY   P     TED TEVF
Sbjct: 176 NPNPNPNTNQSSNFGTNP-PSGYSHPGRINSNININSYPPSPYSPAPSRPTHTEDPTEVF 234

Query: 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQ 291
           +RNA+NKLVEMVH D+T +RK RE E+EGLF  Q +L++REE ++ G+KE+ DE EGLEQ
Sbjct: 235 RRNAINKLVEMVHNDVTALRKTREGEMEGLFGLQGVLKQREEVLNNGVKEMPDEMEGLEQ 294

Query: 292 QLQIVLMNSDILE 304
           QLQ+VLMN+D+LE
Sbjct: 295 QLQMVLMNTDVLE 307

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834038|ref|XP_002884901.1| ATELC [Arabidopsis lyrata subsp. lyrata] gi|297330741|gb|EFH61160.1| ATELC [Arabidopsis lyrata subsp. lyrata]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/305 (66%), Positives = 238/305 (78%), Gaps = 23/305 (7%)

Query: 9   PPNPQQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGR 68
           P NPQQIQQFLSS LSQRGPS++PY E  KWLIRQHLL LIS++PSL+PKTA+F HNDGR
Sbjct: 5   PSNPQQIQQFLSSALSQRGPSSVPYEESNKWLIRQHLLNLISSYPSLEPKTASFMHNDGR 64

Query: 69  SVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSG 128
           SVNLLQADGT+PMPF GVTYNIPVIIWL+ESYPRHPPCVYVNPT DMIIKRPH HVTPSG
Sbjct: 65  SVNLLQADGTIPMPFHGVTYNIPVIIWLLESYPRHPPCVYVNPTADMIIKRPHAHVTPSG 124

Query: 129 LVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYSQRRPSPSPNSSPNPNPSHNQSNPA 188
           LVS+PYLQNW++PSSNLVDLV +LSA F+R+PPLYS+RRP P P S              
Sbjct: 125 LVSLPYLQNWVFPSSNLVDLVSDLSAAFARDPPLYSRRRPQPPPPSP------------- 171

Query: 189 VMSNYGPSPS--PQARPQPARPFPPSPYGGRPQ-------PQPQTEDQTEVFKRNAVNKL 239
             + Y  S +  P A    ARPFPPSPYGG  +        Q Q++D  EVFKRNA+NK+
Sbjct: 172 -PTGYDSSLTRPPSADQSLARPFPPSPYGGGGRVQVQHVHHQQQSDDAAEVFKRNAINKM 230

Query: 240 VEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299
           VEMVH D+  MR+ARE E E L S QA L+RREEE++RGL+E+ +E+E LEQQLQ++ MN
Sbjct: 231 VEMVHGDLVSMRRAREAEAEELLSLQAGLKRREEELNRGLREMVEEKETLEQQLQVISMN 290

Query: 300 SDILE 304
           +DIL+
Sbjct: 291 TDILD 295

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399596|ref|NP_566423.1| protein ELC [Arabidopsis thaliana] gi|75273254|sp|Q9LHG8.1|ELC_ARATH RecName: Full=Protein ELC; Short=AtELC; AltName: Full=ESCRT-I complex subunit VPS23 homolog 1; AltName: Full=Vacuolar protein-sorting-associated protein 23 homolog 1 gi|12321968|gb|AAG51025.1|AC069474_24 unknown protein; 81998-83194 [Arabidopsis thaliana] gi|15795159|dbj|BAB03147.1| mouse and human tumor susceptibility gene-like protein [Arabidopsis thaliana] gi|15810489|gb|AAL07132.1| unknown protein [Arabidopsis thaliana] gi|21593369|gb|AAM65318.1| unknown [Arabidopsis thaliana] gi|22136968|gb|AAM91713.1| unknown protein [Arabidopsis thaliana] gi|332641672|gb|AEE75193.1| protein ELC [Arabidopsis thaliana]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/319 (65%), Positives = 243/319 (76%), Gaps = 38/319 (11%)

Query: 1   MVPPAGTPPPNPQQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTA 60
           MVPP    P NPQQ+QQFLSS LSQRGPS++PY E  KWLIRQHLL LIS++PSL+PKTA
Sbjct: 1   MVPP----PSNPQQVQQFLSSALSQRGPSSVPYEESNKWLIRQHLLNLISSYPSLEPKTA 56

Query: 61  TFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP 120
           +F HNDGRSVNLLQADGT+PMPF GVTYNIPVIIWL+ESYPRHPPCVYVNPT DMIIKRP
Sbjct: 57  SFMHNDGRSVNLLQADGTIPMPFHGVTYNIPVIIWLLESYPRHPPCVYVNPTADMIIKRP 116

Query: 121 HPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYSQRRPSPSP-------N 173
           H HVTPSGLVS+PYLQNW+YPSSNLVDLV +LSA F+R+PPLYS+RRP P P       +
Sbjct: 117 HAHVTPSGLVSLPYLQNWVYPSSNLVDLVSDLSAAFARDPPLYSRRRPQPPPPSPPTVYD 176

Query: 174 SSPNPNPSHNQSNPAVMSNYGPSPSPQARPQPARPFPPSPYGG--------RPQPQPQTE 225
           SS +  PS +QS P                   RPFPPSPYGG            Q Q++
Sbjct: 177 SSLSRPPSADQSLP-------------------RPFPPSPYGGGVSRVQVQHVHHQQQSD 217

Query: 226 DQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDE 285
           D  EVFKRNA+NK+VEMVH+D+  MR+ARE E E L S QA L+RRE+E++ GLKE+ +E
Sbjct: 218 DAAEVFKRNAINKMVEMVHSDLVSMRRAREAEAEELLSLQAGLKRREDELNIGLKEMVEE 277

Query: 286 REGLEQQLQIVLMNSDILE 304
           +E LEQQLQI+ MN+DIL+
Sbjct: 278 KETLEQQLQIISMNTDILD 296

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538545|ref|XP_003537763.1| PREDICTED: protein ELC-like [Glycine max]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/304 (63%), Positives = 226/304 (74%), Gaps = 14/304 (4%)

Query: 15  IQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQ 74
           + QFL+SVLSQRGPSA+PY+EDTKWLIRQHL+ L + FPSL+PKTA+FTHNDGRSVNLLQ
Sbjct: 8   MTQFLNSVLSQRGPSAVPYSEDTKWLIRQHLVALTTAFPSLEPKTASFTHNDGRSVNLLQ 67

Query: 75  ADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPY 134
           ADGT+PM FQGVTYNIPV+IWLMESYPRHPPCVYVNPTRDMIIKRPHPHV PSGLVS+PY
Sbjct: 68  ADGTIPMTFQGVTYNIPVVIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVNPSGLVSVPY 127

Query: 135 LQNWIYPSSNLVDLVRELSACFSREPPLYSQRR---PSPSPNSSPNPNPSHNQSNPAVMS 191
           LQNW YPSSNLVDL+  LS  F R+PPLYSQRR    +    +       +   +P    
Sbjct: 128 LQNWTYPSSNLVDLILNLSLHFGRDPPLYSQRRPNPNTNPNPNPNPNPNPNPTPHPHPPP 187

Query: 192 NYGPSPS----------PQARPQPARPFPPSPYGGRPQPQPQ-TEDQTEVFKRNAVNKLV 240
           NYG S            P A   P     P      P  + Q TED +EVFKRNA+NKLV
Sbjct: 188 NYGNSSPSNLSSSSSGYPHAHAHPPPRTYPPSPYPAPSSRVQSTEDPSEVFKRNAINKLV 247

Query: 241 EMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS 300
           EMVH D+  +RK RE E+EGLFS Q +L++REE ++RG+KE+Q E E LEQQLQ+VLMN+
Sbjct: 248 EMVHGDVAALRKTREDEMEGLFSLQGVLKQREESLNRGVKEMQQEMEALEQQLQMVLMNT 307

Query: 301 DILE 304
           D+LE
Sbjct: 308 DVLE 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073065|ref|XP_002303959.1| predicted protein [Populus trichocarpa] gi|222841391|gb|EEE78938.1| predicted protein [Populus trichocarpa]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/305 (63%), Positives = 221/305 (72%), Gaps = 11/305 (3%)

Query: 1   MVPPAGTPPPNPQQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTA 60
           MVPP   P  N Q IQQFLSSVLSQ G SALPY+EDTKWLIRQHLL+L +T PSL+PKTA
Sbjct: 1   MVPP---PSSNHQAIQQFLSSVLSQSGTSALPYSEDTKWLIRQHLLSLTTTSPSLEPKTA 57

Query: 61  TFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP 120
           TFTHNDGR+VNLLQADGTVP+ F  VTYNIPVIIWL ESYPRHPPCVYVNPTRDMIIKR 
Sbjct: 58  TFTHNDGRTVNLLQADGTVPITFISVTYNIPVIIWLFESYPRHPPCVYVNPTRDMIIKRS 117

Query: 121 HPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYSQRRPSPSPNSSPNPNP 180
           HP V PSGLVSIPYLQNWIYPSSNLVDL RELS+ F R+PPL+SQR       +      
Sbjct: 118 HPFVNPSGLVSIPYLQNWIYPSSNLVDLARELSSVFGRDPPLFSQRPKPNPNPNYHPNQS 177

Query: 181 SHNQSNPAVMSNYGPSPSPQARPQPARPFPPSPYG-GRPQPQPQTEDQTEVFKRNAVNKL 239
           S               P P  RP P  P    PYG G    + + ED  EV+KRN ++KL
Sbjct: 178 SLGSVGNTGGGG--GYPRPIVRP-PQYP----PYGSGGAVGKVEAEDAAEVYKRNVIDKL 230

Query: 240 VEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299
           VE VH D+  + K RE E+E  FS Q++LR REEE ++GLKE++D+ EGLE  LQ+VLMN
Sbjct: 231 VENVHGDMLQLSKTREAEMESWFSAQSVLRGREEEFNKGLKEMRDKMEGLELHLQVVLMN 290

Query: 300 SDILE 304
           +D+LE
Sbjct: 291 TDVLE 295

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
TAIR|locus:2092477	398	ELC [Arabidopsis thaliana (tax	0.496	0.379	0.834	1.8e-95
TAIR|locus:2159113	368	ELC-Like "ELCH-like" [Arabidop	0.496	0.410	0.827	4.3e-92
TAIR|locus:2040394	331	AT2G38830 "AT2G38830" [Arabido	0.467	0.429	0.342	2.6e-30
UNIPROTKB|E1BWW2	393	UEVLD "Uncharacterized protein	0.394	0.305	0.388	1.1e-27
UNIPROTKB|A3KN51	391	TSG101 "TSG101 protein" [Bos t	0.384	0.299	0.389	4.5e-27
UNIPROTKB|F5H442	365	TSG101 "Tumor susceptibility g	0.384	0.320	0.381	9.4e-27
UNIPROTKB|Q99816	390	TSG101 "Tumor susceptibility g	0.384	0.3	0.381	9.4e-27
ZFIN|ZDB-GENE-030217-1	390	tsg101 "tumor susceptibility g	0.394	0.307	0.371	3e-26
MGI|MGI:106581	391	Tsg101 "tumor susceptibility g	0.398	0.309	0.365	4.6e-26
RGD|3909	391	Tsg101 "tumor susceptibility g	0.398	0.309	0.365	4.6e-26

TAIR|locus:2092477 ELC [Arabidopsis thaliana (taxid:3702)]

 Score = 708 (254.3 bits), Expect = 1.8e-95, Sum P(2) = 1.8e-95
 Identities = 126/151 (83%), Positives = 140/151 (92%)

Query:    13 QQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNL 72
             QQ+QQFLSS LSQRGPS++PY E  KWLIRQHLL LIS++PSL+PKTA+F HNDGRSVNL
Sbjct:     9 QQVQQFLSSALSQRGPSSVPYEESNKWLIRQHLLNLISSYPSLEPKTASFMHNDGRSVNL 68

Query:    73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSI 132
             LQADGT+PMPF GVTYNIPVIIWL+ESYPRHPPCVYVNPT DMIIKRPH HVTPSGLVS+
Sbjct:    69 LQADGTIPMPFHGVTYNIPVIIWLLESYPRHPPCVYVNPTADMIIKRPHAHVTPSGLVSL 128

Query:   133 PYLQNWIYPSSNLVDLVRELSACFSREPPLY 163
             PYLQNW+YPSSNLVDLV +LSA F+R+PPLY
Sbjct:   129 PYLQNWVYPSSNLVDLVSDLSAAFARDPPLY 159

GO:0005634 "nucleus" evidence=ISM

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0000813 "ESCRT I complex" evidence=ISS

GO:0005769 "early endosome" evidence=IDA

GO:0005770 "late endosome" evidence=IDA

GO:0010091 "trichome branching" evidence=IMP

GO:0043130 "ubiquitin binding" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0051301 "cell division" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2159113 ELC-Like "ELCH-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 4.3e-92, Sum P(2) = 4.3e-92
 Identities = 125/151 (82%), Positives = 140/151 (92%)

Query:    13 QQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNL 72
             Q+I QFLSS L+QRGPSALPYAE+TK LIRQHLL LIS++ SLDPKTATFTHNDGRSV L
Sbjct:     9 QEIHQFLSSALTQRGPSALPYAENTKSLIRQHLLNLISSYTSLDPKTATFTHNDGRSVIL 68

Query:    73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSI 132
             LQADGT+PMPFQGV+YNIPV+IWL+ESYP++PPCVYVNPTRDMIIKRPH +V+PSGLVS+
Sbjct:    69 LQADGTIPMPFQGVSYNIPVVIWLLESYPQYPPCVYVNPTRDMIIKRPHSNVSPSGLVSL 128

Query:   133 PYLQNWIYPSSNLVDLVRELSACFSREPPLY 163
             PYLQNWIYPSSNLVDL   LSA FSR+PPLY
Sbjct:   129 PYLQNWIYPSSNLVDLASHLSAAFSRDPPLY 159

GO:0005634 "nucleus" evidence=ISM

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0000813 "ESCRT I complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2040394 AT2G38830 "AT2G38830" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
 Identities = 51/149 (34%), Positives = 82/149 (55%)

Query:    17 QFLSSVLSQRGPSALPYAE-DTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQA 75
             +F+   L   G  AL Y + D KWLIR+HL +L+  +P+ +  T TF HN+G  V L   
Sbjct:    12 KFIEKALLATGSFALSYTDPDQKWLIRKHLTSLLQDYPNFELSTDTFNHNNGAKVQLFCL 71

Query:    76 DGTVPMPFQGVTYNIPVI---IWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSI 132
             +G++ +  +  T  +P +   IW+ E+YP  PP V++NP   + I+  HP +  SG    
Sbjct:    72 EGSLRI--RSSTTQLPTVQLTIWIHENYPLTPPLVFINPN-SIPIRNNHPFINSSGYTKS 128

Query:   133 PYLQNWIYPSSNLVDLVRELSACFSREPP 161
              Y++ W +P  NL+D +R L    + + P
Sbjct:   129 RYIETWEHPRCNLLDFIRNLKKVLANDHP 157

GO:0003674 "molecular_function" evidence=ND

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|E1BWW2 UEVLD "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 273 (101.2 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
 Identities = 47/121 (38%), Positives = 75/121 (61%)

Query:    43 QHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPR 102
             Q   ++IS +  L P   ++  NDG S  L+   GT+P+P++G  YNIP+ +WL+++YP 
Sbjct:    23 QETNSVISQYKDLKPVMDSYVFNDGSSRELMSLSGTIPVPYRGNVYNIPICLWLLDTYPF 82

Query:   103 HPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPL 162
             +PP  +V PT  M IK    HV  +G + +PYL  W YP S+L++L++ +   F  EPP+
Sbjct:    83 NPPICFVKPTSSMTIKTGK-HVDANGKIYLPYLHEWKYPQSDLLELIQVMIVVFGEEPPV 141

Query:   163 Y 163
             +
Sbjct:   142 F 142

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0001558 "regulation of cell growth" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0030216 "keratinocyte differentiation" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0046755 "non-lytic virus budding" evidence=IEA

GO:0048306 "calcium-dependent protein binding" evidence=IEA

UNIPROTKB|A3KN51 TSG101 "TSG101 protein" [Bos taurus (taxid:9913)]

 Score = 267 (99.0 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
 Identities = 46/118 (38%), Positives = 74/118 (62%)

Query:    46 LTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPP 105
             + +IS +  L P   ++  NDG S  L+   GT+P+P++G TYNIP+ +WL+++YP +PP
Sbjct:    26 VNVISLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPP 85

Query:   106 CVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLY 163
               +V PT  M IK    HV  +G + +PYL  W +P S+L+ L++ +   F  EPP++
Sbjct:    86 ICFVKPTSSMTIKTGK-HVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVF 142

GO:0048306 "calcium-dependent protein binding" evidence=IEA

GO:0046755 "non-lytic virus budding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0030216 "keratinocyte differentiation" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0001558 "regulation of cell growth" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

UNIPROTKB|F5H442 TSG101 "Tumor susceptibility gene 101 protein" [Homo sapiens (taxid:9606)]

 Score = 264 (98.0 bits), Expect = 9.4e-27, Sum P(2) = 9.4e-27
 Identities = 45/118 (38%), Positives = 74/118 (62%)

Query:    46 LTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPP 105
             + +I+ +  L P   ++  NDG S  L+   GT+P+P++G TYNIP+ +WL+++YP +PP
Sbjct:    26 VNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPP 85

Query:   106 CVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLY 163
               +V PT  M IK    HV  +G + +PYL  W +P S+L+ L++ +   F  EPP++
Sbjct:    86 ICFVKPTSSMTIKTGK-HVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVF 142

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q99816 TSG101 "Tumor susceptibility gene 101 protein" [Homo sapiens (taxid:9606)]

 Score = 264 (98.0 bits), Expect = 9.4e-27, Sum P(2) = 9.4e-27
 Identities = 45/118 (38%), Positives = 74/118 (62%)

Query:    46 LTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPP 105
             + +I+ +  L P   ++  NDG S  L+   GT+P+P++G TYNIP+ +WL+++YP +PP
Sbjct:    26 VNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPP 85

Query:   106 CVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLY 163
               +V PT  M IK    HV  +G + +PYL  W +P S+L+ L++ +   F  EPP++
Sbjct:    86 ICFVKPTSSMTIKTGK-HVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVF 142

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0001558 "regulation of cell growth" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0030216 "keratinocyte differentiation" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0048306 "calcium-dependent protein binding" evidence=IPI

GO:0005769 "early endosome" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0046755 "non-lytic virus budding" evidence=ISS;IMP

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0003677 "DNA binding" evidence=TAS

GO:0005771 "multivesicular body" evidence=TAS

GO:0043130 "ubiquitin binding" evidence=TAS

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IDA

GO:0010008 "endosome membrane" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

GO:0046788 "egress of virus within host cell" evidence=TAS

GO:0005770 "late endosome" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-030217-1 tsg101 "tumor susceptibility gene 101" [Danio rerio (taxid:7955)]

 Score = 256 (95.2 bits), Expect = 3.0e-26, Sum P(2) = 3.0e-26
 Identities = 45/121 (37%), Positives = 73/121 (60%)

Query:    43 QHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPR 102
             + +  +IS +  L P    +  NDG S +L+   GTVP+ ++G  YNIPV +WL+++YP 
Sbjct:    24 REITNVISQYKDLKPVMDAYVFNDGSSRDLMSLTGTVPVSYRGNVYNIPVCLWLLDTYPY 83

Query:   103 HPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPL 162
             +PP  +V PT  M+IK    H+  +G + +PYL  W +P S+L  L++ +   F  EPP+
Sbjct:    84 NPPICFVKPTSAMMIKTGK-HIDANGKIYLPYLHEWKHPQSDLYGLIQVMIVVFGEEPPV 142

Query:   163 Y 163
             +
Sbjct:   143 F 143

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:106581 Tsg101 "tumor susceptibility gene 101" [Mus musculus (taxid:10090)]

 Score = 254 (94.5 bits), Expect = 4.6e-26, Sum P(2) = 4.6e-26
 Identities = 45/123 (36%), Positives = 76/123 (61%)

Query:    41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESY 100
             +RQ  + +I+ +  L P   ++  NDG S  L+   GT+P+ ++G  YNIP+ +WL+++Y
Sbjct:    22 VRQ-TVNVIAMYKDLKPVLDSYVFNDGSSRELVNLTGTIPVRYRGNIYNIPICLWLLDTY 80

Query:   101 PRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREP 160
             P +PP  +V PT  M IK    HV  +G + +PYL +W +P S L++L++ +   F  EP
Sbjct:    81 PYNPPICFVKPTSSMTIKTGK-HVDANGKIYLPYLHDWKHPRSELLELIQIMIVIFGEEP 139

Query:   161 PLY 163
             P++
Sbjct:   140 PVF 142

GO:0001558 "regulation of cell growth" evidence=IDA

GO:0003714 "transcription corepressor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IC

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005768 "endosome" evidence=IEA

GO:0005769 "early endosome" evidence=ISO

GO:0005770 "late endosome" evidence=ISO

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IDA

GO:0008285 "negative regulation of cell proliferation" evidence=IDA

GO:0008333 "endosome to lysosome transport" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0030154 "cell differentiation" evidence=IDA

GO:0030216 "keratinocyte differentiation" evidence=IDA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0040008 "regulation of growth" evidence=IEA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0046755 "non-lytic virus budding" evidence=ISO;IMP

GO:0048306 "calcium-dependent protein binding" evidence=ISO

GO:0051301 "cell division" evidence=IEA

RGD|3909 Tsg101 "tumor susceptibility gene 101" [Rattus norvegicus (taxid:10116)]

 Score = 254 (94.5 bits), Expect = 4.6e-26, Sum P(2) = 4.6e-26
 Identities = 45/123 (36%), Positives = 76/123 (61%)

Query:    41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESY 100
             +RQ  + +I+ +  L P   ++  NDG S  L+   GT+P+ ++G  YNIP+ +WL+++Y
Sbjct:    22 VRQ-TVNVIAMYKDLKPVLDSYVFNDGSSRELVNLTGTIPVRYRGNIYNIPICLWLLDTY 80

Query:   101 PRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREP 160
             P +PP  +V PT  M IK    HV  +G + +PYL +W +P S L++L++ +   F  EP
Sbjct:    81 PYNPPICFVKPTSSMTIKTGK-HVDANGKIYLPYLHDWKHPRSELLELIQIMIVIFGEEP 139

Query:   161 PLY 163
             P++
Sbjct:   140 PVF 142

GO:0001558 "regulation of cell growth" evidence=ISO

GO:0003714 "transcription corepressor activity" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005769 "early endosome" evidence=ISO

GO:0005770 "late endosome" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0008333 "endosome to lysosome transport" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0030154 "cell differentiation" evidence=ISO

GO:0030216 "keratinocyte differentiation" evidence=ISO

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0031902 "late endosome membrane" evidence=IEA

GO:0040008 "regulation of growth" evidence=IEA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0046755 "non-lytic virus budding" evidence=ISO;ISS

GO:0048306 "calcium-dependent protein binding" evidence=ISO

GO:0051301 "cell division" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LHG8	ELC_ARATH	No assigned EC number	0.6520	0.9243	0.7060	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	304
pfam05743	119	pfam05743, UEV, UEV domain	6e-52
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-04
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	0.004

>gnl|CDD|203324 pfam05743, UEV, UEV domain

 Score =  166 bits (422), Expect = 6e-52
 Identities = 61/120 (50%), Positives = 80/120 (66%), Gaps = 1/120 (0%)

Query: 41  IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESY 100
               L+ ++  FP+L P+T  FT NDG S  LL   GT+P+ ++G TYNIP++IWL ++Y
Sbjct: 1   TFHDLVNVLRKFPNLRPRTDVFTFNDGSSKLLLNLYGTIPVTYRGNTYNIPILIWLPDTY 60

Query: 101 PRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREP 160
           P  PP  +V PT DM+IK  H HV   G V +PYL NW +PSSNLVDLV+EL+  F  EP
Sbjct: 61  PFSPPICFVKPTPDMVIKVNH-HVDAQGRVYLPYLHNWNHPSSNLVDLVQELAQVFGEEP 119

This family includes the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other human malignancies. However, the involvement of this gene in neoplastic transformation and tumorigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but that this gene is not a tumour suppressor for sporadic forms of breast cancer. This family is related to the ubiquitin conjugating enzymes. Length = 119

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 18/72 (25%), Positives = 23/72 (31%)

Query: 157  SREPPLYSQRRPSPSPNSSPNPNPSHNQSNPAVMSNYGPSPSPQARPQPARPFPPSPYGG 216
               PP+    RP+ S ++     P      P       P       P P +P PP P   
Sbjct: 2878 PARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP 2937

Query: 217  RPQPQPQTEDQT 228
            RPQP        
Sbjct: 2938 RPQPPLAPTTDP 2949

Length = 3151

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 22/103 (21%)

Query: 82  PFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYL--QNWI 139
           P++G  +   + I   E YP  PP V        I K  HP+V  SG + +  L  + W 
Sbjct: 41  PYEGGVF--KLTIEFPEDYPFKPPKVK------FITKIYHPNVDSSGEICLDILKQEKW- 91

Query: 140 YPSSNLVDLVRELSACFSREPPLYSQRRPSPSPNSSPNPNPSH 182
            P+  L  ++  L +  S            P+P+S  N + + 
Sbjct: 92  SPALTLETVLLSLQSLLS-----------EPNPDSPLNADAAE 123

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	304
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	100.0
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	100.0
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	99.18
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	99.16
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	98.98
PLN00172	147	ubiquitin conjugating enzyme; Provisional	98.87
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	98.87
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	98.79
KOG0421	175	consensus Ubiquitin-protein ligase [Posttranslatio	98.72
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	98.68
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	98.67
KOG0419	152	consensus Ubiquitin-protein ligase [Posttranslatio	98.51
KOG0422	153	consensus Ubiquitin-protein ligase [Posttranslatio	98.42
KOG0424	158	consensus Ubiquitin-protein ligase [Posttranslatio	98.16
KOG0420	184	consensus Ubiquitin-protein ligase [Posttranslatio	97.98
KOG0416	189	consensus Ubiquitin-protein ligase [Posttranslatio	97.96
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	97.75
KOG0427	161	consensus Ubiquitin conjugating enzyme [Posttransl	97.52
KOG0425	171	consensus Ubiquitin-protein ligase [Posttranslatio	97.4
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	97.13
KOG0426	165	consensus Ubiquitin-protein ligase [Posttranslatio	96.67
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	96.48
KOG0423	223	consensus Ubiquitin-protein ligase [Posttranslatio	95.95
PRK10884	206	SH3 domain-containing protein; Provisional	95.56
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	95.3
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	94.5
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	93.57
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	93.44
KOG4571	294	consensus Activating transcription factor 4 [Trans	92.98
KOG0896	138	consensus Ubiquitin-conjugating enzyme E2 [Posttra	92.55
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	92.44
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	92.35
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	92.18
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	92.09
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	91.6
KOG0894	244	consensus Ubiquitin-protein ligase [Posttranslatio	91.47
PRK10884	206	SH3 domain-containing protein; Provisional	91.47
PF09798	654	LCD1: DNA damage checkpoint protein; InterPro: IPR	91.21
KOG1760	131	consensus Molecular chaperone Prefoldin, subunit 4	91.13
COG4026	290	Uncharacterized protein containing TOPRIM domain,	91.1
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	90.67
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	90.58
KOG4657	246	consensus Uncharacterized conserved protein [Funct	90.13
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	89.62
PRK15422	79	septal ring assembly protein ZapB; Provisional	89.13
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	89.0
COG4026	290	Uncharacterized protein containing TOPRIM domain,	88.72
PF00038	312	Filament: Intermediate filament protein; InterPro:	88.49
KOG0429	258	consensus Ubiquitin-conjugating enzyme-related pro	88.35
PRK12704	520	phosphodiesterase; Provisional	88.34
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	88.13
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	87.99
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	87.87
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	87.83
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	87.81
PF14712	92	Snapin_Pallidin: Snapin/Pallidin	87.77
PRK00106	535	hypothetical protein; Provisional	87.62
PF09177	97	Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP	87.17
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	87.14
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	87.07
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	87.04
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	86.92
PRK10132	108	hypothetical protein; Provisional	86.9
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	86.84
PRK00409	782	recombination and DNA strand exchange inhibitor pr	86.73
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	86.46
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	86.44
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	86.34
KOG0428	314	consensus Non-canonical ubiquitin conjugating enzy	86.32
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	86.08
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	85.85
KOG4571	294	consensus Activating transcription factor 4 [Trans	85.82
PF00038	312	Filament: Intermediate filament protein; InterPro:	85.58
PRK12705	508	hypothetical protein; Provisional	85.38
KOG1962	216	consensus B-cell receptor-associated protein and r	85.35
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	85.31
PRK11637	428	AmiB activator; Provisional	85.3
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	85.13
COG2433	652	Uncharacterized conserved protein [Function unknow	84.94
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	84.73
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	84.56
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	84.53
COG4942	420	Membrane-bound metallopeptidase [Cell division and	84.49
TIGR03495	135	phage_LysB phage lysis regulatory protein, LysB fa	84.36
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	84.19
COG4575	104	ElaB Uncharacterized conserved protein [Function u	84.02
PRK00888	105	ftsB cell division protein FtsB; Reviewed	83.95
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	83.8
PF03961	451	DUF342: Protein of unknown function (DUF342); Inte	83.76
PF06657	79	Cep57_MT_bd: Centrosome microtubule-binding domain	83.63
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	83.62
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	83.58
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	83.55
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	83.5
PRK11637	428	AmiB activator; Provisional	83.46
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	83.42
COG3937	108	Uncharacterized conserved protein [Function unknow	83.4
COG3416	233	Uncharacterized protein conserved in bacteria [Fun	83.37
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	83.34
PF09849	247	DUF2076: Uncharacterized protein conserved in bact	83.14
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	82.97
PF06595	201	BDV_P24: Borna disease virus P24 protein; InterPro	82.87
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	82.68
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	82.52
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	82.49
KOG2685	421	consensus Cystoskeletal protein Tektin [Cytoskelet	82.4
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	82.35
PF04799	171	Fzo_mitofusin: fzo-like conserved region; InterPro	82.15
TIGR00414	418	serS seryl-tRNA synthetase. This model represents	82.08
PF04799	171	Fzo_mitofusin: fzo-like conserved region; InterPro	81.96
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	81.92
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	81.9
PHA01750	75	hypothetical protein	81.78
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	81.71
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	81.35
KOG4603	201	consensus TBP-1 interacting protein [Signal transd	81.22
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	81.15
COG1422	201	Predicted membrane protein [Function unknown]	81.12
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	81.07
PF11172	201	DUF2959: Protein of unknown function (DUF2959); In	80.81
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	80.63
PF07795	214	DUF1635: Protein of unknown function (DUF1635); In	80.38
KOG3684	489	consensus Ca2+-activated K+ channel proteins (inte	80.28
KOG3088	313	consensus Secretory carrier membrane protein [Intr	80.23
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	80.2
PRK05431	425	seryl-tRNA synthetase; Provisional	80.18
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	80.14
COG5019	373	CDC3 Septin family protein [Cell division and chro	80.09
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	80.04

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-60  Score=447.08  Aligned_cols=263  Identities=41%  Similarity=0.672  Sum_probs=204.5

Q ss_pred             HHHHHHHHhcCCCCCCCCCCchhhHHHHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEE
Q 039489           15 IQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVII   94 (304)
Q Consensus        15 ~~~wL~~vl~~~~~~a~~Y~~~~k~~v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~I   94 (304)
                      +.||+++++.        |....+|++++|++++|..|++|+|+|++|+|+||++++||+++||||+.|+|++|||||+|
T Consensus         3 ~~q~~~~~~~--------~~~~~~~~~~~~~l~lls~~~sL~P~t~tf~~~Dg~s~~ll~~~GTIp~~~~G~tYnIPV~i   74 (365)
T KOG2391|consen    3 VSQRQPKVIP--------YIYNYKDLTRQDLLNLLSSFKSLRPKTDTFTHNDGRSRLLLQLDGTIPVPYQGVTYNIPVII   74 (365)
T ss_pred             ccccccceec--------ccccchhhHHHHHHHHHHhccccCcccceEEecCCCccchhhccCcccccccCCcccceEEE
Confidence            5677777775        44445899999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccccccCCCCCHHHHHHHHHHHhccCCCCCCCCC---CCCC
Q 039489           95 WLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYSQRR---PSPS  171 (304)
Q Consensus        95 wlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~~W~~~~s~L~~Lv~~l~~~F~~~pPl~~~~~---~~~~  171 (304)
                      ||+++||+.||+|||+||++|.||. |.|||+||+|||||||+|.+++|||++||++|+..|+++||+|+++.   ++||
T Consensus        75 WlldtyP~~pP~c~VnPT~~M~ik~-~~hVd~nG~V~LPYLh~W~~pssdLv~Liq~l~a~f~~~pP~ys~~~~~~p~p~  153 (365)
T KOG2391|consen   75 WLLDTYPYYPPICYVNPTSTMIIKV-HEHVDPNGKVYLPYLHNWDPPSSDLVGLIQELIAAFSEDPPVYSRSLPSPPPPY  153 (365)
T ss_pred             EecccCCCCCCeEEecCCchhhhHH-hhccCCCCeEechhhccCCCccchHHHHHHHHHHHhcCCCccccCCCCCCCCCC
Confidence            9999999999999999999999977 99999999999999999999999999999999999999999999765   4555


Q ss_pred             CCCCCCCCCCC--CCCCCCCCCCCCC-CC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 039489          172 PNSSPNPNPSH--NQSNPAVMSNYGP-SP---SPQARPQPARPFPPSPYGGRPQPQPQTEDQTEVFKRNAVNKLVEMVHA  245 (304)
Q Consensus       172 p~~~~~p~~~~--~~~~~~~~~~~~~-~~---~~~p~~~~~~~~pp~p~~~~~~~~~~~~~a~E~~r~s~lsal~dkl~~  245 (304)
                      |+..|++++..  .+..++|+|.+++ |+   .+|..-....+||+-+            +.--.||++.++++.|++++
T Consensus       154 p~~~~~~~p~~p~~~~~~~p~p~p~~~~gas~~~~~~~d~~~~yp~n~------------~~~~~irasvisa~~eklR~  221 (365)
T KOG2391|consen  154 PQTEYNTPPLKPKGSAYKPPLPPPPPPGGASALPYMTDDNAEPYPPNA------------SGKLVIRASVISAVREKLRR  221 (365)
T ss_pred             CcccCCCCCCCCCCcCcCCCCCCCCCCCccccCcccCCCCCCcCCCCc------------ccccchhHHHHHHHHHHHHH
Confidence            55555554431  1112223332211 11   1121111122233211            11122999999999999998


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489          246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~  298 (304)
                      ++++.+.+.++|+++++++++||+.++++|+.++++|+++..+|+++++.|..
T Consensus       222 r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~  274 (365)
T KOG2391|consen  222 RREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKS  274 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            88887777777777777777777777777777777777777777777766643

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=100.00  E-value=3.8e-45  Score=304.48  Aligned_cols=121  Identities=57%  Similarity=0.987  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP  120 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~  120 (304)
                      +++|+..+|++||+|+|++++||++||++++||||+|||||.|+|.+|||||+|||+++||++||+|||+|+.+|.|+..
T Consensus         1 ~~~d~~~~l~~y~~L~p~~~~ft~~~G~~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~   80 (121)
T PF05743_consen    1 TFNDVLSVLQNYPSLRPRTDTFTFNDGSSKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPS   80 (121)
T ss_dssp             HHHHHHHHHHHSTTEEEEEEEEESTTSTEEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGC
T ss_pred             CHHHHHHHHHHCCCCcEeeeeeEcCCCChheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCC
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999775


Q ss_pred             CCcccCCCceeccccccccCCCCCHHHHHHHHHHHhccCCCC
Q 039489          121 HPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPL  162 (304)
Q Consensus       121 ~~~Vd~~G~v~lpyL~~W~~~~s~L~~Lv~~l~~~F~~~pPl  162 (304)
                      | |||+||+|++|||++|+.++|||++||++|+++|+++|||
T Consensus        81 ~-~Vd~~G~v~~pyL~~W~~~~s~L~~lv~~l~~~F~~~pPl  121 (121)
T PF05743_consen   81 H-HVDSNGRVYLPYLQNWNPPSSNLVDLVQELQAVFSEEPPL  121 (121)
T ss_dssp             C-CB-TTSBB-SHHHHT--TTTS-HHHHHHHHHHCCCHS-SE
T ss_pred             C-eECCCCCEeCchhccCCCCCCCHHHHHHHHHHHHhHcCCC
Confidence            5 9999999999999999999999999999999999999996

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=2.5e-10  Score=108.79  Aligned_cols=190  Identities=28%  Similarity=0.347  Sum_probs=121.3

Q ss_pred             CCCCCCeEEEecCCCceecCCCCcccCCC--ce-eccccc--cccCC------CCCHHHHHHHHHHHhccCCCCCCCCCC
Q 039489          100 YPRHPPCVYVNPTRDMIIKRPHPHVTPSG--LV-SIPYLQ--NWIYP------SSNLVDLVRELSACFSREPPLYSQRRP  168 (304)
Q Consensus       100 YP~~pPivyV~pt~~m~I~~~~~~Vd~~G--~v-~lpyL~--~W~~~------~s~L~~Lv~~l~~~F~~~pPl~~~~~~  168 (304)
                      =+++=|+|+..+... -.+.+--+|++.-  .| .+-|++  -|.+=      ..-=.+|+..++..|..    |+...+
T Consensus        66 ~tYnIPV~iWlldty-P~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh~W~~pssdLv~Liq~l~a~----f~~~pP  140 (365)
T KOG2391|consen   66 VTYNIPVIIWLLDTY-PYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLHNWDPPSSDLVGLIQELIAA----FSEDPP  140 (365)
T ss_pred             CcccceEEEEecccC-CCCCCeEEecCCchhhhHHhhccCCCCeEechhhccCCCccchHHHHHHHHHHH----hcCCCc
Confidence            467889998876422 1112233444322  11 134444  34420      22448899999999988    665432


Q ss_pred             CCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCChHHHHHHHHHHHHH---HH
Q 039489          169 SPS--PNSSPNPNPSHNQSNPAVMSNYGPSPSPQARPQPARPFPPSPYGGRPQ-PQPQTEDQTEVFKRNAVNKLV---EM  242 (304)
Q Consensus       169 ~~~--p~~~~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~pp~p~~~~~~-~~~~~~~a~E~~r~s~lsal~---dk  242 (304)
                      --.  -++++.|++.+   .+.+.+..++|.+.++      |+|++|++++.+ ..-.+.++.+.+.+++.....   ..
T Consensus       141 ~ys~~~~~~p~p~p~~---~~~~~p~~p~~~~~~~------p~p~p~~~~gas~~~~~~~d~~~~yp~n~~~~~~irasv  211 (365)
T KOG2391|consen  141 VYSRSLPSPPPPYPQT---EYNTPPLKPKGSAYKP------PLPPPPPPGGASALPYMTDDNAEPYPPNASGKLVIRASV  211 (365)
T ss_pred             cccCCCCCCCCCCCcc---cCCCCCCCCCCcCcCC------CCCCCCCCCccccCcccCCCCCCcCCCCcccccchhHHH
Confidence            111  12233444321   1111111222221122      233322222222 222355778888888888887   88


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 039489          243 VHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDIL  303 (304)
Q Consensus       243 l~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~  303 (304)
                      +++..+.+|++.++||+.+.+.|+.|++++++|+++.++|+.++++||++.+.|.+|+|||
T Consensus       212 isa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL  272 (365)
T KOG2391|consen  212 ISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDIL  272 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            8889999999999999999999999999999999999999999999999999999999997

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=99.16  E-value=3.3e-10  Score=96.36  Aligned_cols=105  Identities=21%  Similarity=0.387  Sum_probs=79.3

Q ss_pred             HHHHHHHHHhCCCCccccceeecCCCceee-EEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489           42 RQHLLTLISTFPSLDPKTATFTHNDGRSVN-LLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP  120 (304)
Q Consensus        42 ~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~-LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~  120 (304)
                      .+|+..+...-+   +...++..+||.... -.++.|.-...|+|..|  .+.|+|+++||.+||.|++...      .-
T Consensus         4 ~~E~~~~~~~~~---~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f--~~~l~~p~~yP~~pP~v~f~~~------i~   72 (145)
T smart00212        4 LKELKELLKDPP---PGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIF--KLTIEFPPDYPFKPPKVKFITK------IY   72 (145)
T ss_pred             HHHHHHHHhCCC---CCeEEEECCCCChheEEEEEEcCCCCCcCCcEE--EEEEECCcccCCCCCEEEEeCC------ce
Confidence            366666655433   233345555542222 24456655677999887  5699999999999999999743      23


Q ss_pred             CCcccCCCceeccccc--cccCCCCCHHHHHHHHHHHhcc
Q 039489          121 HPHVTPSGLVSIPYLQ--NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       121 ~~~Vd~~G~v~lpyL~--~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      |++||.+|.||+++|.  +|++ ..+|.+++..|..+|.+
T Consensus        73 Hp~i~~~G~icl~~l~~~~W~p-~~~l~~il~~i~~~l~~  111 (145)
T smart00212       73 HPNVDSSGEICLDILKQEKWSP-ATTLETVLLSIQSLLSE  111 (145)
T ss_pred             EeeECCCCCEehhhcCCCCCCC-CCcHHHHHHHHHHHHhC
Confidence            9999999999999998  9996 79999999999999975

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=98.98  E-value=5.1e-09  Score=88.65  Aligned_cols=105  Identities=21%  Similarity=0.313  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP  120 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~  120 (304)
                      +.+|...+.+.-+   ....+...++.-.+-.++|.|.--..|+|..|.+  .|+++++||.+||.|.+. +   .  .-
T Consensus         4 l~~E~~~l~~~~~---~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~--~~~~p~~yP~~pP~v~f~-~---~--i~   72 (141)
T cd00195           4 LQKELKDLKKDPP---SGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKL--DIEFPEDYPFKPPKVRFV-T---K--IY   72 (141)
T ss_pred             HHHHHHHHHhCCC---CCeEEEECCCChhEEEEEEecCCCCCccCCEEEE--EEECCCccCCCCCeEEEe-C---C--cc
Confidence            4477777765433   1122223334333444555554445588888877  999999999999999996 2   1  24


Q ss_pred             CCcccCCCceecccccc--ccCCCCCHHHHHHHHHHHhc
Q 039489          121 HPHVTPSGLVSIPYLQN--WIYPSSNLVDLVRELSACFS  157 (304)
Q Consensus       121 ~~~Vd~~G~v~lpyL~~--W~~~~s~L~~Lv~~l~~~F~  157 (304)
                      |++||.+|.||+.+|..  |.+ ..+|.++|..|...|.
T Consensus        73 HpnV~~~G~icl~~l~~~~W~p-~~~l~~il~~i~~~l~  110 (141)
T cd00195          73 HPNVDENGKICLSILKTHGWSP-AYTLRTVLLSLQSLLN  110 (141)
T ss_pred             cCCCCCCCCCchhhcCCCCcCC-cCcHHHHHHHHHHHHh
Confidence            99999999999999985  886 7789999999999998

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=98.87  E-value=2.3e-08  Score=86.00  Aligned_cols=106  Identities=19%  Similarity=0.355  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP  120 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~  120 (304)
                      +.+|+..+...-+   +.....-.++.-..--..|.|---..|+|..|.+  .|.|+++||+.||.|.+. |.   |  -
T Consensus         6 l~kE~~~l~~~~~---~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~--~i~fp~~YP~~pP~v~f~-t~---i--~   74 (147)
T PLN00172          6 IQKEHKDLLKDPP---SNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFL--SILFPPDYPFKPPKVQFT-TK---I--Y   74 (147)
T ss_pred             HHHHHHHHHhCCC---CCeEEEECCCChheEEEEEECCCCCCCCCCEEEE--EEECCcccCCCCCEEEEe-cC---c--c
Confidence            5578888865422   1122222333323333455665456799988876  889999999999999885 53   2  3


Q ss_pred             CCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489          121 HPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       121 ~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      |++||.+|.||+.+|. +|++ ..+|.+++..|...|..
T Consensus        75 HPNv~~~G~iCl~il~~~W~p-~~ti~~il~~i~~ll~~  112 (147)
T PLN00172         75 HPNINSNGSICLDILRDQWSP-ALTVSKVLLSISSLLTD  112 (147)
T ss_pred             cceECCCCEEEcccCcCCCCC-cCcHHHHHHHHHHHHhC
Confidence            9999999999999995 8997 78999999999998854

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=98.87  E-value=2.2e-08  Score=86.59  Aligned_cols=106  Identities=22%  Similarity=0.372  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP  120 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~  120 (304)
                      +.+|+..+...-+ -.  ...+..+|.-..--+.|.|.--..|+|..|.+  .|.++.+||+.||.|.+. |.  +   -
T Consensus         7 l~~E~~~l~~~~~-~~--i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~--~i~~p~~YP~~pP~v~F~-t~--i---~   75 (152)
T PTZ00390          7 IEKETQNLANDPP-PG--IKAEPDPGNYRHFKILMEGPDGTPYEGGYYKL--ELFLPEQYPMEPPKVRFL-TK--I---Y   75 (152)
T ss_pred             HHHHHHHHHhCCC-CC--eEEEECCCCccEEEEEEEcCCCCCCcCcEEEE--EEECccccCCCCCEEEEe-cC--C---e
Confidence            4577777754322 22  22233233222223444554446688888776  899999999999999885 53  2   3


Q ss_pred             CCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489          121 HPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       121 ~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      |++||.+|.||+.+|. +|++ ..++.+++..|...|..
T Consensus        76 HPNV~~~G~iCl~iL~~~W~p-~~ti~~iL~~i~~ll~~  113 (152)
T PTZ00390         76 HPNIDKLGRICLDILKDKWSP-ALQIRTVLLSIQALLSA  113 (152)
T ss_pred             eceECCCCeEECccCcccCCC-CCcHHHHHHHHHHHHhC
Confidence            9999999999999995 8997 88999999999998863

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=3.6e-08  Score=85.47  Aligned_cols=106  Identities=25%  Similarity=0.391  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCC-CceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecC
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHND-GRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR  119 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~d-G~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~  119 (304)
                      +.+|+..+...-+   +.+...-.+| --..--..+.|----.|.|..|.+  .|-+|++||+.||.|.+. ++  +   
T Consensus        10 L~kE~~~l~~~~~---~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~--~l~fP~~YP~~PPkv~F~-t~--i---   78 (153)
T COG5078          10 LLKELKKLQKDPP---PGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKL--TLEFPEDYPFKPPKVRFT-TK--I---   78 (153)
T ss_pred             HHHHHHHHhcCCC---CceEEEECCCCcceeEEEEEECCCCCCcCCCEEEE--EEECCCCCCCCCCeeeec-cC--C---
Confidence            4477877766542   2222222222 222233445555567899999988  899999999999999885 33  2   


Q ss_pred             CCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489          120 PHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       120 ~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      -|++||.+|+||+.+|+ +|++ ..+|..++..|+..|.+
T Consensus        79 ~HPNV~~~G~vCLdIL~~~WsP-~~~l~sILlsl~slL~~  117 (153)
T COG5078          79 FHPNVDPSGNVCLDILKDRWSP-VYTLETILLSLQSLLLS  117 (153)
T ss_pred             cCCCcCCCCCChhHHHhCCCCc-cccHHHHHHHHHHHHcC
Confidence            39999999999999999 9996 99999999999998876

>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=1.6e-08  Score=85.93  Aligned_cols=100  Identities=22%  Similarity=0.482  Sum_probs=80.2

Q ss_pred             HHHHHHHHHh-CCCCccccceeecCCCceeeEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489           42 RQHLLTLIST-FPSLDPKTATFTHNDGRSVNLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI  116 (304)
Q Consensus        42 ~~dv~~vl~~-yp~L~p~~~~ft~~dG~~~~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~  116 (304)
                      .++++.++.. -++..      .|.++-  +|++-.|||    -..|.|.+|.+  .+-+|.+||+.||+|.+. |+  .
T Consensus        35 q~ELm~Lmms~~~gIS------AFP~~d--nlf~WvGtItGp~dTvyegl~ykl--Sl~Fp~~YPy~pP~vkFl-tp--c  101 (175)
T KOG0421|consen   35 QSELMGLMMSNTPGIS------AFPESD--NLFKWVGTITGPKDTVYEGLKYKL--SLSFPNNYPYKPPTVKFL-TP--C  101 (175)
T ss_pred             HHHHHHHHhcCCCCcc------cCcCcC--ceeEEeeEeeCCCCccccCcEEEE--EEecCCCCCCCCCeeEee-cc--c
Confidence            4677777653 33332      245553  899999988    57899999998  888999999999999774 43  2


Q ss_pred             ecCCCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489          117 IKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       117 I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      .   |++||-+|.||+.+|+ .|.. -+|+..++.+++.++|+
T Consensus       102 ~---HPNVD~~GnIcLDILkdKWSa-~YdVrTILLSiQSLLGE  140 (175)
T KOG0421|consen  102 F---HPNVDLSGNICLDILKDKWSA-VYDVRTILLSIQSLLGE  140 (175)
T ss_pred             c---CCCccccccchHHHHHHHHHH-HHhHHHHHHHHHHHhCC
Confidence            2   9999999999999999 8986 78999999999998885

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=3.8e-08  Score=84.31  Aligned_cols=78  Identities=23%  Similarity=0.458  Sum_probs=69.1

Q ss_pred             EEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCHHHHHH
Q 039489           72 LLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVR  150 (304)
Q Consensus        72 LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~  150 (304)
                      -..+.|.--..|.|.+|.+  .|.||++||+.||.|.+. |.  +.   |++||.+|+||+.+|. +|.+ ..+|..++.
T Consensus        34 ~a~I~GP~~SpYEgG~F~l--~I~~p~~YP~~PPkV~F~-Tk--Iy---HPNI~~~G~IclDILk~~WsP-Al~i~~Vll  104 (148)
T KOG0417|consen   34 QATILGPPGSPYEGGVFFL--EIHFPEDYPFKPPKVRFL-TK--IY---HPNIDSNGRICLDILKDQWSP-ALTISKVLL  104 (148)
T ss_pred             EEEEECCCCCCcCCCEEEE--EEECCCCCCCCCCceEee-cc--cc---cCCcCccccchHHhhhccCCh-hhHHHHHHH
Confidence            3567888889999999998  999999999999999885 65  33   9999999999999999 9997 999999999


Q ss_pred             HHHHHhcc
Q 039489          151 ELSACFSR  158 (304)
Q Consensus       151 ~l~~~F~~  158 (304)
                      .++.++++
T Consensus       105 sI~sLL~~  112 (148)
T KOG0417|consen  105 SICSLLSD  112 (148)
T ss_pred             HHHHHhcC
Confidence            99997764

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=98.67  E-value=1.1e-07  Score=80.26  Aligned_cols=102  Identities=20%  Similarity=0.327  Sum_probs=72.5

Q ss_pred             HHHHHHHHHh-CCCCccccceeecCC-CceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecC
Q 039489           42 RQHLLTLIST-FPSLDPKTATFTHND-GRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR  119 (304)
Q Consensus        42 ~~dv~~vl~~-yp~L~p~~~~ft~~d-G~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~  119 (304)
                      .+|+..+.+. -.++...    ..+| .-..--+.+.|----.|+|..|.+  .|.|+.+||++||.|.+. |.     .
T Consensus         3 ~~E~~~l~~~~~~~~~~~----~~~~~~~~~w~~~i~gp~~t~y~gg~f~~--~i~~p~~YP~~pP~v~f~-t~-----i   70 (140)
T PF00179_consen    3 QKELKELQKNPPPGISVQ----PSEDDNLFEWHVTIFGPPGTPYEGGIFKF--RISFPPDYPFSPPKVRFL-TP-----I   70 (140)
T ss_dssp             HHHHHHHHHSHTTTEEEE----EESTTETTEEEEEEEBETTSTTTTSEEEE--EEEETTTTTTS--EEEES-SS------
T ss_pred             HHHHHHHhhCCCCCEEEE----ECCCCChheEEEEEeccCccceecccccc--cccccccccccccccccc-cc-----c
Confidence            4666655443 2223222    2233 444455666776667789988866  999999999999999996 42     2


Q ss_pred             CCCcccCCCceeccccc--cccCCCCCHHHHHHHHHHHh
Q 039489          120 PHPHVTPSGLVSIPYLQ--NWIYPSSNLVDLVRELSACF  156 (304)
Q Consensus       120 ~~~~Vd~~G~v~lpyL~--~W~~~~s~L~~Lv~~l~~~F  156 (304)
                      -|++||.+|+||+..|+  +|++ ..+|..+|..|..+|
T Consensus        71 ~HPni~~~G~icl~~l~~~~W~p-~~~i~~il~~i~~ll  108 (140)
T PF00179_consen   71 FHPNIDENGRICLDILNPESWSP-SYTIESILLSIQSLL  108 (140)
T ss_dssp             SBTTB-TTSBBGHGGGTTTTC-T-TSHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhhhhcccCCc-ccccccHHHHHHHHH
Confidence            49999999999999999  4887 999999999999999

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=2.2e-07  Score=78.13  Aligned_cols=77  Identities=23%  Similarity=0.491  Sum_probs=66.2

Q ss_pred             EEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCHHHHHHH
Q 039489           73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRE  151 (304)
Q Consensus        73 L~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~  151 (304)
                      ..|.|.=-..|.|.+|.+  .|-+.++||..||.|.+. + .    .=|++|+++|.+|+.+|+ +|++ .+++..++-.
T Consensus        38 a~I~Gp~~tp~e~gtFkL--tl~FteeYpnkPP~VrFv-s-~----mFHPNvya~G~iClDiLqNrWsp-~Ydva~ILts  108 (152)
T KOG0419|consen   38 AVIFGPQDTPFEGGTFKL--TLEFTEEYPNKPPTVRFV-S-K----MFHPNVYADGSICLDILQNRWSP-TYDVASILTS  108 (152)
T ss_pred             eeEEcCCCCCcCCceEEE--EEEcccccCCCCCeeEee-e-e----ccCCCcCCCCcchHHHHhcCCCC-chhHHHHHHH
Confidence            467888888899999998  888999999999999875 2 1    239999999999999999 8986 9999999988


Q ss_pred             HHHHhcc
Q 039489          152 LSACFSR  158 (304)
Q Consensus       152 l~~~F~~  158 (304)
                      ++.+++.
T Consensus       109 iQslL~d  115 (152)
T KOG0419|consen  109 IQSLLND  115 (152)
T ss_pred             HHHHhcC
Confidence            8887753

>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=9.2e-07  Score=75.03  Aligned_cols=79  Identities=28%  Similarity=0.506  Sum_probs=64.7

Q ss_pred             eeEEEEEecc---cccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc--cccCCCCC
Q 039489           70 VNLLQADGTV---PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ--NWIYPSSN  144 (304)
Q Consensus        70 ~~LL~L~GtI---Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~--~W~~~~s~  144 (304)
                      .+|+.-+|-|   -..|+...|+|  .|-+|-+|||.||.+-+. |  |+.   |++||..|.||+|+|.  +|.+ ...
T Consensus        30 ~nll~wt~llipd~ppY~kgaF~l--~I~fp~eYPFKPP~i~f~-t--kiY---HpNVDe~gqvClPiis~EnWkP-~T~  100 (153)
T KOG0422|consen   30 ANLLKWTGLLIPDKPPYNKGAFRL--EIDFPVEYPFKPPKIKFK-T--KIY---HPNVDEKGQVCLPIISAENWKP-ATR  100 (153)
T ss_pred             ccceeEEeEecCCCCCccCcceEE--EeeCCCCCCCCCCeeeee-e--eec---cCCCCCCCceeeeeeecccccC-ccc
Confidence            4777777766   34566667776  899999999999999886 3  444   9999999999999998  9997 778


Q ss_pred             HHHHHHHHHHHhc
Q 039489          145 LVDLVRELSACFS  157 (304)
Q Consensus       145 L~~Lv~~l~~~F~  157 (304)
                      .-++++.|+.+..
T Consensus       101 teqVlqaLi~liN  113 (153)
T KOG0422|consen  101 TEQVLQALIALIN  113 (153)
T ss_pred             HHHHHHHHHHHhc
Confidence            8888888888654

>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=7.1e-06  Score=70.05  Aligned_cols=86  Identities=26%  Similarity=0.578  Sum_probs=69.4

Q ss_pred             eecCCCceeeEEEEEeccc----ccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-
Q 039489           62 FTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-  136 (304)
Q Consensus        62 ft~~dG~~~~LL~L~GtIP----i~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-  136 (304)
                      -.+.|| +.+|.+-..+||    -.|.|.-|.|  .+-++++||..||.|-+.+.-      -|++|+++|.|||.+|. 
T Consensus        29 ~~~~dg-~~nl~~Wec~IPG~~~t~wEGg~y~l--~v~F~~dyP~~PPkckF~~pl------~HPNVypsgtVcLsiL~e   99 (158)
T KOG0424|consen   29 VKNADG-TLNLMNWECGIPGKKGTPWEGGLYKL--TVNFPDDYPSSPPKCKFKPPL------FHPNVYPSGTVCLSILNE   99 (158)
T ss_pred             cCCCCC-cceeEEEEeecCCCCCCcCcCceEEE--EEeCCccCCCCCCccccCCCC------cCCCcCCCCcEehhhhcc
Confidence            345677 478888888887    4566666765  888999999999999997552      39999999999999998 


Q ss_pred             --cccCCCCCHHHHHHHHHHHhc
Q 039489          137 --NWIYPSSNLVDLVRELSACFS  157 (304)
Q Consensus       137 --~W~~~~s~L~~Lv~~l~~~F~  157 (304)
                        .|.+ .-+|-.++..+++++.
T Consensus       100 ~~~W~p-aitikqiL~gIqdLL~  121 (158)
T KOG0424|consen  100 EKDWRP-AITIKQILLGIQDLLD  121 (158)
T ss_pred             ccCCCc-hhhHHHHHHHHHHHhc
Confidence              3986 7788888888888664

>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=7.1e-06  Score=71.89  Aligned_cols=96  Identities=24%  Similarity=0.373  Sum_probs=70.3

Q ss_pred             CCccccceeecCCCceeeEEEEEecc---cccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCce
Q 039489           54 SLDPKTATFTHNDGRSVNLLQADGTV---PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLV  130 (304)
Q Consensus        54 ~L~p~~~~ft~~dG~~~~LL~L~GtI---Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v  130 (304)
                      +|.+.+..-..+.+-..+-++++=||   -=.|+|..+.+  .|-++..||+.||.|-+. |  ++.   |++||-+|.|
T Consensus        41 nLp~t~~~s~~~~~~d~~~~~~elti~PdEGyY~gGkf~F--~~~v~~~Yp~~PPKVkCl-t--kV~---HPNId~~GnV  112 (184)
T KOG0420|consen   41 NLPPTCSLSFPDSPDDLNNLEFELTITPDEGYYQGGKFRF--KFKVPNAYPHEPPKVKCL-T--KVY---HPNIDLDGNV  112 (184)
T ss_pred             cCCCccccccccCCcccccceEEEEEccCcceecCceEEE--EEECCCCCCCCCCeeeee-e--ccc---cCCcCCcchH
Confidence            35444433222223333333565555   12477777776  789999999999999774 4  243   9999999999


Q ss_pred             eccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489          131 SIPYLQ-NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       131 ~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      |+-+|+ +|.+ .-||-++|--|..+|-+
T Consensus       113 CLnILRedW~P-~lnL~sIi~GL~~LF~e  140 (184)
T KOG0420|consen  113 CLNILREDWRP-VLNLNSIIYGLQFLFLE  140 (184)
T ss_pred             HHHHHHhcCcc-ccchHHHHHHHHHHhcc
Confidence            999999 8997 88999999999999875

>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=1.5e-05  Score=69.74  Aligned_cols=97  Identities=22%  Similarity=0.430  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHh-CCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecC
Q 039489           41 IRQHLLTLIST-FPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR  119 (304)
Q Consensus        41 v~~dv~~vl~~-yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~  119 (304)
                      +-.||..++.. |.       +=+.|||-++-.+++.|.---.|.|..+.|  .+-||++||+..|-|=+. +   +|  
T Consensus         8 id~Dv~KL~~s~ye-------V~~ind~m~ef~V~f~GP~ds~YegGvWkv--~V~lPd~YP~KSPSIGFv-n---KI--   72 (189)
T KOG0416|consen    8 IDTDVMKLLMSDYE-------VTIINDGMQEFYVKFHGPKDSPYEGGVWKV--RVELPDNYPFKSPSIGFV-N---KI--   72 (189)
T ss_pred             hhhHHHHHHhcCCe-------EEEecCcccEEEEEeeCCCCCcccCceEEE--EEECCCCCCCCCCcccce-e---ec--
Confidence            55899999875 42       335678899999999999999999999998  789999999998877443 2   22  


Q ss_pred             CCCcccC-CCceeccccc-cccCCCCCHHHHHHHHH
Q 039489          120 PHPHVTP-SGLVSIPYLQ-NWIYPSSNLVDLVRELS  153 (304)
Q Consensus       120 ~~~~Vd~-~G~v~lpyL~-~W~~~~s~L~~Lv~~l~  153 (304)
                      -|++||. +|.||+..|+ .|.+ -.+|+.+++.+.
T Consensus        73 fHPNIDe~SGsVCLDViNQtWSp-~yDL~NIfetfL  107 (189)
T KOG0416|consen   73 FHPNIDEASGSVCLDVINQTWSP-LYDLVNIFETFL  107 (189)
T ss_pred             cCCCchhccCccHHHHHhhhhhH-HHHHHHHHHHHh
Confidence            4999986 9999999998 7885 556666555544

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=8e-05  Score=66.24  Aligned_cols=86  Identities=27%  Similarity=0.437  Sum_probs=65.7

Q ss_pred             CCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccC-CCceeccccc-cccCCC
Q 039489           65 NDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTP-SGLVSIPYLQ-NWIYPS  142 (304)
Q Consensus        65 ~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~-~G~v~lpyL~-~W~~~~  142 (304)
                      |+.-...--.+.|..-..|.|.+|-|  .|-+|++||+.||-|-+. |.  +   =|++|.+ .|.||+++|. +|.. +
T Consensus        32 n~~~~~ikG~I~GP~~TPYEGG~Fel--dI~iPe~YPF~pPkv~F~-Tk--I---wHPnVSs~tGaICLDilkd~Wa~-s  102 (200)
T KOG0418|consen   32 NENLKEIKGHIAGPEDTPYEGGVFEL--DIKIPENYPFKPPKVKFI-TK--I---WHPNVSSQTGAICLDILKDQWAA-S  102 (200)
T ss_pred             cCChhhceeEecCCCCCCCCCceEEE--EEecCCCCCCCCCceeee-ee--e---ecCCCCcccccchhhhhhcccch-h
Confidence            33333444556666678999999998  788999999999999775 32  2   3888866 8999999998 8986 7


Q ss_pred             CCHHHHHHHHHHHhccC
Q 039489          143 SNLVDLVRELSACFSRE  159 (304)
Q Consensus       143 s~L~~Lv~~l~~~F~~~  159 (304)
                      -+|..++-+|+..++.-
T Consensus       103 lTlrtvLislQalL~~p  119 (200)
T KOG0418|consen  103 LTLRTVLISLQALLCAP  119 (200)
T ss_pred             hhHHHHHHHHHHHHcCC
Confidence            78888887877766543

>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.0011  Score=56.14  Aligned_cols=103  Identities=17%  Similarity=0.325  Sum_probs=73.2

Q ss_pred             HHHHHHHHhCC-CCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCC
Q 039489           43 QHLLTLISTFP-SLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPH  121 (304)
Q Consensus        43 ~dv~~vl~~yp-~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~  121 (304)
                      +++..+-..=| +|+-++     .|.-.+=.+-+.|.-..-|.|.+|.+  .+-+++.||++.|-|.+.-.    | +.|
T Consensus        22 KEl~e~q~~pP~G~~~~v-----~dnlqqWii~v~Ga~GTLYa~e~~qL--q~~F~~~YP~esPqVmF~~~----~-P~H   89 (161)
T KOG0427|consen   22 KELSEWQNNPPTGFKHRV-----TDNLQQWIIEVTGAPGTLYANETYQL--QVEFPEHYPMESPQVMFVGP----A-PLH   89 (161)
T ss_pred             HHHHHHhcCCCCcceeec-----ccchheeEEEEecCCceeecCcEEEE--EEecCCCCCCCCCeEEEecC----C-CCC
Confidence            55555533332 354442     25555666777777777799999998  77899999999887655311    2 569


Q ss_pred             CcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489          122 PHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       122 ~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      +||.+||-|||.+|- +|.+ .-.+..++..+...++.
T Consensus        90 PHiYSNGHICL~iL~d~WsP-Amsv~SvClSIlSMLSS  126 (161)
T KOG0427|consen   90 PHIYSNGHICLDILYDSWSP-AMSVQSVCLSILSMLSS  126 (161)
T ss_pred             CceecCCeEEEEeecccCCc-chhhHHHHHHHHHHHcc
Confidence            999999999999997 9997 66666666666665553

>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.00044  Score=59.98  Aligned_cols=75  Identities=20%  Similarity=0.402  Sum_probs=57.5

Q ss_pred             EEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc--------------cc
Q 039489           73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ--------------NW  138 (304)
Q Consensus        73 L~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~--------------~W  138 (304)
                      +.+.|.=-.-|.|.-|+-  .+-+|.+||++||.+.+.  ..|-    |++|+.+|+||+-+||              +|
T Consensus        40 V~i~gppdTlYeGG~FkA--~m~FP~dYP~sPP~~rF~--s~mw----HPNvy~~G~vCISILH~pgdD~~gyE~~~erW  111 (171)
T KOG0425|consen   40 VAIIGPPDTLYEGGFFKA--HMKFPQDYPLSPPTFRFT--SKMW----HPNVYEDGDVCISILHPPGDDPSGYELPSERW  111 (171)
T ss_pred             EEEEcCCCccccCceeEE--EEeCcccCCCCCCceeee--hhhc----CCCcCCCCCEEEEeecCCCCCcccCCChhhcc
Confidence            456676667799988887  788999999999999884  3343    9999999999999987              35


Q ss_pred             cCCCCCHHHHHHHHHHHh
Q 039489          139 IYPSSNLVDLVRELSACF  156 (304)
Q Consensus       139 ~~~~s~L~~Lv~~l~~~F  156 (304)
                      .+ ..++-.++-+++..+
T Consensus       112 ~P-v~tvetIllSiIsmL  128 (171)
T KOG0425|consen  112 LP-VQTVETILLSIISML  128 (171)
T ss_pred             CC-ccchhHhHHHHHHHH
Confidence            54 556666666666544

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=97.13  E-value=0.0064  Score=66.04  Aligned_cols=86  Identities=21%  Similarity=0.450  Sum_probs=70.7

Q ss_pred             EEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccccccC-------CCCCHH
Q 039489           74 QADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIY-------PSSNLV  146 (304)
Q Consensus        74 ~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~~W~~-------~~s~L~  146 (304)
                      .|.|.--..|++.-|-+  .|.||.+||..||+|+.. +-+|.+   +++...+|+||+-.|..|.-       ++|+++
T Consensus       886 ~~~g~~~tpy~~~~f~f--d~~~~~~yp~~pp~~~~~-s~~~r~---npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~l  959 (1101)
T KOG0895|consen  886 VIVGAAGTPYQDGLFFF--DFQFPQDYPSSPPLVHYH-SGGVRL---NPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSIL  959 (1101)
T ss_pred             HhhCCCCCccccceEEE--EeecCCCCCCCCCceEee-cCceee---CcccccccceehhhhccccCCCccccCcchhHH
Confidence            45677666777776655  889999999999999997 555776   78899999999999998862       378899


Q ss_pred             HHHHHHHHHhccCCCCCCC
Q 039489          147 DLVRELSACFSREPPLYSQ  165 (304)
Q Consensus       147 ~Lv~~l~~~F~~~pPl~~~  165 (304)
                      .++-.++.+.-.+-|-|.-
T Consensus       960 q~l~s~q~l~l~~~py~ne  978 (1101)
T KOG0895|consen  960 QVLVSIQGLVLNEEPYFNE  978 (1101)
T ss_pred             HHHHHhhhhhcccccccCc
Confidence            9999999888888888774

>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.67  E-value=0.0037  Score=52.96  Aligned_cols=55  Identities=29%  Similarity=0.513  Sum_probs=45.7

Q ss_pred             EEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceecccccc
Q 039489           75 ADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQN  137 (304)
Q Consensus        75 L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~~  137 (304)
                      ++|.--..|.|..|+-  .+-+|.+||.+||...+  |.+|-    |++|.++|+||+-+||.
T Consensus        41 I~GP~~T~f~~GvfpA--~l~FP~DYPLsPPkm~F--tc~~f----HPNiy~dG~VCISILHa   95 (165)
T KOG0426|consen   41 IQGPEDTCFEGGVFPA--RLSFPLDYPLSPPKMRF--TCEMF----HPNIYPDGRVCISILHA   95 (165)
T ss_pred             eeCCCCCcccCCccce--eeecCCCCCCCCCceee--ecccc----cCcccCCCeEEEEEeeC
Confidence            5777777888887755  88999999999999877  44444    99999999999999873

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=96.48  E-value=0.0083  Score=50.59  Aligned_cols=67  Identities=19%  Similarity=0.391  Sum_probs=48.9

Q ss_pred             ccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceec---cc-cccccCCCCCHHHHHHHHHHHhc
Q 039489           87 TYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSI---PY-LQNWIYPSSNLVDLVRELSACFS  157 (304)
Q Consensus        87 ~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~l---py-L~~W~~~~s~L~~Lv~~l~~~F~  157 (304)
                      .-.++|.|-++..||..||.||+.-..  .+ .--+||+.+|.+|+   -+ ++.|++ ...+.++++....+..
T Consensus        35 ~~~~~l~l~~p~~FP~~pp~v~l~d~~--~~-~~~pHv~~~G~LCl~~~~~~~D~~~P-~~~~~~~l~~a~~lL~  105 (133)
T PF14461_consen   35 GGPFPLRLVFPDDFPYLPPRVYLEDPK--QF-PLLPHVESDGKLCLLDEELVLDPWDP-EGIIADCLERAIRLLE  105 (133)
T ss_pred             CeEEEEEEEECCcccCcCCEEEecCcc--cc-CccCeEcCCCeEEEecCCcccCccCH-HHHHHHHHHHHHHHHH
Confidence            446788999999999999999997322  11 13689999999886   33 446665 6677777777666655

>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.95  E-value=0.0056  Score=54.03  Aligned_cols=60  Identities=27%  Similarity=0.572  Sum_probs=51.1

Q ss_pred             EEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccC
Q 039489           73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIY  140 (304)
Q Consensus        73 L~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~  140 (304)
                      ..|+|.....|.|.-|.+  .+-|-++||.+||--|+. |.  +   -|++|.+||.||.--|. +|++
T Consensus        44 a~IeGP~GTPYa~GlFRm--KL~L~kDFP~sPPKgYFl-TK--I---FHPNVaaNGEICVNtLKkDW~p  104 (223)
T KOG0423|consen   44 ADIEGPVGTPYANGLFRM--KLALSKDFPHSPPKGYFL-TK--I---FHPNVAANGEICVNTLKKDWNP  104 (223)
T ss_pred             hhccCCCCCccccceeee--hhhhcCCCCCCCCcceee-ee--e---ccCCcccCceehhhhhhcccCc
Confidence            457888888898888887  778999999999999984 43  3   39999999999988888 9996

>PRK10884 SH3 domain-containing protein; Provisional

Probab=95.56  E-value=0.081  Score=48.22  Aligned_cols=63  Identities=10%  Similarity=0.115  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489          236 VNKLVEMVHADITGMRKAREVEVEGLFS-------TQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       236 lsal~dkl~~el~~l~~t~~ae~e~l~~-------~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~  298 (304)
                      +.+-.+.++.+++++..+.+++..++..       .-++|+++.++|++.+..++.|.++|+.+++.+..
T Consensus        98 le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~  167 (206)
T PRK10884         98 LENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR  167 (206)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555554443333332222       22456666666666666666666666666655544

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=95.30  E-value=0.28  Score=37.48  Aligned_cols=63  Identities=22%  Similarity=0.319  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489          238 KLVEMVHADITGMRKAREV---EVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS  300 (304)
Q Consensus       238 al~dkl~~el~~l~~t~~a---e~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~  300 (304)
                      +++++|..+++.+.+|...   |++.|..-..+|+.+.+.|......|+++++.+..+|..|..+-
T Consensus         4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl   69 (72)
T PF06005_consen    4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL   69 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5666777777666665544   45555555578888999999999999999999999999887664

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=94.50  E-value=0.55  Score=39.52  Aligned_cols=64  Identities=17%  Similarity=0.306  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489          235 AVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       235 ~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~  298 (304)
                      .+++-.+.++.++..++...+.-...|...+.....++..|++.|..++...++|..+...|-+
T Consensus        63 ~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~  126 (132)
T PF07926_consen   63 QLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHD  126 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444444445555555555555555555555554444433

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=93.57  E-value=1.4  Score=37.08  Aligned_cols=68  Identities=16%  Similarity=0.173  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 039489          236 VNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDIL  303 (304)
Q Consensus       236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~  303 (304)
                      ..+...+++.++..+.................|...+..++..-..|+++..++++++..|...+.+|
T Consensus        57 ~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lL  124 (132)
T PF07926_consen   57 DIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLL  124 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455678888888888888888888888899999999999999999999999999999998887765

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=93.44  E-value=0.57  Score=38.46  Aligned_cols=41  Identities=20%  Similarity=0.328  Sum_probs=15.6

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL  293 (304)
Q Consensus       253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l  293 (304)
                      +.+.++|+..--+.+|.+.++.|+..+..|+.+.+.+.+++
T Consensus        20 ~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~   60 (107)
T PF09304_consen   20 SLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRI   60 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=92.98  E-value=0.85  Score=43.58  Aligned_cols=69  Identities=23%  Similarity=0.277  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489          227 QTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS  300 (304)
Q Consensus       227 a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~  300 (304)
                      ..+-.+|.+.+...     -...-|++..+|+|++..--..|.+|.++|++-+.+|++|...|.+.|....++.
T Consensus       224 ~~~~~~rkr~qnk~-----AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~r  292 (294)
T KOG4571|consen  224 PEKKLRRKRQQNKA-----AATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYKKR  292 (294)
T ss_pred             chHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34444555444443     2233345566677777666677777777888888888888888888777665543

>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]

Probab=92.55  E-value=0.53  Score=40.14  Aligned_cols=101  Identities=24%  Similarity=0.340  Sum_probs=73.1

Q ss_pred             HHHHHHh-CCCCccccceeecCCCceeeEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCceecC
Q 039489           45 LLTLIST-FPSLDPKTATFTHNDGRSVNLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR  119 (304)
Q Consensus        45 v~~vl~~-yp~L~p~~~~ft~~dG~~~~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~  119 (304)
                      ++..|.. -+.+.+.+..|-.+|..--.|..=.|+|    .-.|.|..|++  .|---.+||..||.|++. +   .|  
T Consensus        10 lleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysL--KI~Cgp~YPe~PP~vrf~-t---ki--   81 (138)
T KOG0896|consen   10 LLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSL--KIECGPKYPELPPTVRFG-T---KI--   81 (138)
T ss_pred             hhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeE--EEecCCCCCCCCceeEEE-E---Ee--
Confidence            3334443 5678888888998888877888777777    78899999998  777889999999999974 2   22  


Q ss_pred             CCCcccCCC-ce---eccccccccCCCCCHHHHHHHHHH
Q 039489          120 PHPHVTPSG-LV---SIPYLQNWIYPSSNLVDLVRELSA  154 (304)
Q Consensus       120 ~~~~Vd~~G-~v---~lpyL~~W~~~~s~L~~Lv~~l~~  154 (304)
                      +=+.|+.++ .|   .+..|.+|.. .+++-.++..+..
T Consensus        82 nm~gvn~~~g~Vd~~~i~~L~~W~~-~y~~~~vl~~lr~  119 (138)
T KOG0896|consen   82 NMNGVNSSNGVVDPRDITVLARWQR-SYSIKMVLGQLRK  119 (138)
T ss_pred             eecccccCCCccCccccchhhcccc-cchhhHHHHhhhH
Confidence            223444444 33   3678999996 6777777777664

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=92.44  E-value=1.2  Score=41.56  Aligned_cols=45  Identities=27%  Similarity=0.274  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          250 MRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQ  294 (304)
Q Consensus       250 l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~  294 (304)
                      -.+..+.|.|.|++....|-...++++.-++.+.+|..+++++.+
T Consensus       105 en~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~  149 (292)
T KOG4005|consen  105 ENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQ  149 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHH
Confidence            334445555555555566666677777777778888888777665

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=92.35  E-value=1.3  Score=39.09  Aligned_cols=55  Identities=13%  Similarity=0.115  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          234 NAVNKLVEMVHADITGMRKAREVEVEGLFS-TQALLRRREEEIDRGLKELQDEREG  288 (304)
Q Consensus       234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~-~q~eL~~~~~~l~~~I~~L~~E~~e  288 (304)
                      +.+.+..++|++|++.++....+|++.+.. ++-++..++.++.+....++.+..+
T Consensus        76 ~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e  131 (177)
T PF07798_consen   76 AELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQE  131 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            345556666777777777766666666655 2233333333333333333333333

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=92.18  E-value=1.4  Score=38.39  Aligned_cols=64  Identities=20%  Similarity=0.294  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489          236 VNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD  301 (304)
Q Consensus       236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~  301 (304)
                      |+.-...++.++.++......+...|..+.+.+..  ++|...|..|+.|.++|+..|+.|...+.
T Consensus        77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~--~el~~~i~~l~~e~~~l~~kL~~l~~~~~  140 (169)
T PF07106_consen   77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTN--EELREEIEELEEEIEELEEKLEKLRSGSK  140 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            33334555555555555555555555555433322  24777777888888888888877776543

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=92.09  E-value=1.4  Score=44.41  Aligned_cols=62  Identities=13%  Similarity=0.161  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489          238 KLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN  299 (304)
Q Consensus       238 al~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~  299 (304)
                      ...++++.|+++++...+.+++++.--...|++.++..++.+..++.+..+|+++|.+|+.-
T Consensus       389 ~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~  450 (493)
T KOG0804|consen  389 TKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFF  450 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhee
Confidence            34444555666666566666666666668888888888888888888999999988887643

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=91.60  E-value=1.6  Score=32.37  Aligned_cols=45  Identities=22%  Similarity=0.312  Sum_probs=20.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 039489          252 KAREVEVEGLFSTQALLRRREE---EIDRGLKELQDEREGLEQQLQIV  296 (304)
Q Consensus       252 ~t~~ae~e~l~~~q~eL~~~~~---~l~~~I~~L~~E~~eLe~~l~~l  296 (304)
                      ...++||.+...++.||++-+.   ..++-|++-+....+|+..|..|
T Consensus         4 saL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L   51 (61)
T PF08826_consen    4 SALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERL   51 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555544332   33333444444444444444444

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.47  E-value=0.9  Score=41.77  Aligned_cols=79  Identities=16%  Similarity=0.196  Sum_probs=54.9

Q ss_pred             CCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc----cccCC
Q 039489           66 DGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ----NWIYP  141 (304)
Q Consensus        66 dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~----~W~~~  141 (304)
                      |..-+-=-||.|.--..|.|.-|+=  .|-+|.+||+.||-|+.. |+      ++++. .|-|+||-+-+    .|++.
T Consensus        32 ~nILEWHYvl~GpedTPy~GG~YhG--kl~FP~eyP~KPPaI~Mi-TP------NGRFk-tntRLCLSiSDfHPdsWNP~  101 (244)
T KOG0894|consen   32 NNILEWHYVLRGPEDTPYYGGYYHG--KLIFPPEYPFKPPAITMI-TP------NGRFK-TNTRLCLSISDFHPDSWNPG  101 (244)
T ss_pred             cceeeeEEEeeCCCCCCccCceeee--EEeCCCCCCCCCCeeEEE-CC------CCcee-cCceEEEeccccCcCcCCCc
Confidence            3333444689999999999999987  778999999999999874 43      35553 36677765543    89974


Q ss_pred             CC---CHHHHHHHHHH
Q 039489          142 SS---NLVDLVRELSA  154 (304)
Q Consensus       142 ~s---~L~~Lv~~l~~  154 (304)
                      -|   =|.+|+.-|.+
T Consensus       102 WsVStILtGLlSFM~e  117 (244)
T KOG0894|consen  102 WSVSTILTGLLSFMTE  117 (244)
T ss_pred             ccHHHHHHHHHHHHhc
Confidence            32   34555554443

>PRK10884 SH3 domain-containing protein; Provisional

Probab=91.47  E-value=1.6  Score=39.78  Aligned_cols=66  Identities=14%  Similarity=0.146  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 039489          238 KLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDIL  303 (304)
Q Consensus       238 al~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~  303 (304)
                      ....+++.++++++++..+.........++|.+.-++.++.+.+|+.|.++|.++++.+..+.|.|
T Consensus        93 ~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l  158 (206)
T PRK10884         93 TRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAA  158 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344667777777776666666666666677777777777777778888888888887777666554

>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases

Probab=91.21  E-value=0.82  Score=48.35  Aligned_cols=55  Identities=20%  Similarity=0.377  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 039489          242 MVHADITGMRKAREVEVEGLFSTQALLRRREE----EIDRGLKELQDEREGLEQQLQIV  296 (304)
Q Consensus       242 kl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~----~l~~~I~~L~~E~~eLe~~l~~l  296 (304)
                      +||++|+.|.++.++|.+.+....++|++.++    +|+..|++||||++=|.-++..+
T Consensus         1 mLRdkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~   59 (654)
T PF09798_consen    1 MLRDKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSL   59 (654)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37889999999999999999999988887765    78899999999999887776655

In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].

>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]

Probab=91.13  E-value=3.3  Score=34.96  Aligned_cols=65  Identities=18%  Similarity=0.263  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          234 NAVNKLVEMVHADITGMRKAREVEVEGLF--------------------------STQALLRRREEEIDRGLKELQDERE  287 (304)
Q Consensus       234 s~lsal~dkl~~el~~l~~t~~ae~e~l~--------------------------~~q~eL~~~~~~l~~~I~~L~~E~~  287 (304)
                      +++..-.+.+.+|++..+...+.+-|+..                          ++|..|++-++.+++.|+.|+.+.+
T Consensus        26 srl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e  105 (131)
T KOG1760|consen   26 SRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELE  105 (131)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555566778888888887777666544                          3668888888999999999999999


Q ss_pred             HHHHHHHHHhh
Q 039489          288 GLEQQLQIVLM  298 (304)
Q Consensus       288 eLe~~l~~l~~  298 (304)
                      ..+.+++.|..
T Consensus       106 ~I~~~m~~LK~  116 (131)
T KOG1760|consen  106 SISARMDELKK  116 (131)
T ss_pred             HHHHHHHHHHH
Confidence            88888887754

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=91.10  E-value=1.6  Score=40.51  Aligned_cols=14  Identities=29%  Similarity=0.458  Sum_probs=8.9

Q ss_pred             CcccceeEEEeecc
Q 039489           85 GVTYNIPVIIWLME   98 (304)
Q Consensus        85 g~~ynIPi~Iwlp~   98 (304)
                      |..|||-|.=.+|.
T Consensus        32 G~eYnITisSIiPT   45 (290)
T COG4026          32 GSEYNITISSIIPT   45 (290)
T ss_pred             cccceeEEEeeccC
Confidence            67888876644443

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=90.67  E-value=0.83  Score=50.28  Aligned_cols=89  Identities=19%  Similarity=0.360  Sum_probs=70.3

Q ss_pred             EEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccccccC--------CCCCH
Q 039489           74 QADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIY--------PSSNL  145 (304)
Q Consensus        74 ~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~~W~~--------~~s~L  145 (304)
                      .+.|+--..|.+..|-  +.|.+|..||..||.|-..-+.+-.+   .++-..+|+|++-.|-.|..        ..+.|
T Consensus       317 lIig~~gtPy~~glf~--Fdiq~P~~yPa~pp~v~~lt~~~~R~---nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl  391 (1101)
T KOG0895|consen  317 LIIGPDGTPYADGLFL--FDIQFPDTYPAVPPHVKYLTGGGVRL---NPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSL  391 (1101)
T ss_pred             EEecCCCCCCcCCcee--eEeecCCCCCCCCceeEEeeccceee---cCCcccCceEEeeeeeecccccccCCCccccch
Confidence            4667777777777766  69999999999999998874545555   45556699999988866653        35899


Q ss_pred             HHHHHHHHHHhccCCCCCCCCC
Q 039489          146 VDLVRELSACFSREPPLYSQRR  167 (304)
Q Consensus       146 ~~Lv~~l~~~F~~~pPl~~~~~  167 (304)
                      ..++..++.+-+.+.|-+..+.
T Consensus       392 ~qvL~sIQ~Li~~e~Py~ne~g  413 (1101)
T KOG0895|consen  392 LQVLESIQGLILNEEPYFNEPG  413 (1101)
T ss_pred             hhhhhhhhhhhcccCccccccc
Confidence            9999999999999988887653

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=90.58  E-value=2.4  Score=35.82  Aligned_cols=50  Identities=8%  Similarity=0.136  Sum_probs=28.9

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039489          253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDI  302 (304)
Q Consensus       253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~  302 (304)
                      ...+-+|...++++..+++-.++.+.+..+..+.+.++..++.|+.+-+-
T Consensus        72 ~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~  121 (126)
T PF07889_consen   72 RVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE  121 (126)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444445555555566666666667777777777666665443

The region featured in this family is approximately 100 amino acids long.

>KOG4657 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.13  E-value=3.6  Score=38.12  Aligned_cols=67  Identities=27%  Similarity=0.336  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489          232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQAL------LR----RREEEIDRGLKELQDEREGLEQQLQIVLMN  299 (304)
Q Consensus       232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~e------L~----~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~  299 (304)
                      +++.++.+.+.++ .+.......+.+.+.+.+++.|      |.    .++..++..|..++.|.+.|++++|.+...
T Consensus        39 r~~~~nS~~efar-~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE  115 (246)
T KOG4657|consen   39 RRRSMNSLVEFAR-ALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEE  115 (246)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555 3333333333333444444422      22    233355666677777777777777777543

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=89.62  E-value=5.6  Score=36.83  Aligned_cols=50  Identities=20%  Similarity=0.205  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489          248 TGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL  297 (304)
Q Consensus       248 ~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~  297 (304)
                      .+.+....++++.+.+--+.|+...+++++.+..++++.++|+++++.+.
T Consensus        48 ~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~   97 (251)
T PF11932_consen   48 DDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE   97 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444466666677777777777777777777776653

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=89.13  E-value=6.7  Score=30.56  Aligned_cols=36  Identities=22%  Similarity=0.439  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489          266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD  301 (304)
Q Consensus       266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~  301 (304)
                      ++++.+++.|..-...|++|...++.+|..|..+-|
T Consensus        42 ~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~   77 (79)
T PRK15422         42 QNAQHQREELERENNHLKEQQNGWQERLQALLGRME   77 (79)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            445556777888888899999999999988877654

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=89.00  E-value=2.8  Score=41.01  Aligned_cols=61  Identities=15%  Similarity=0.252  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          236 VNKLVEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIV  296 (304)
Q Consensus       236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l  296 (304)
                      |.+-.+.-+.|.++|+.+.+.++..|++.+   .+.+.+.++|+.-|..+++|...|+-.++.+
T Consensus        90 i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l  153 (401)
T PF06785_consen   90 IRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDAL  153 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            444455566788888888888888888877   4445556677777777777777766666655

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=88.72  E-value=6.5  Score=36.60  Aligned_cols=13  Identities=23%  Similarity=0.442  Sum_probs=6.3

Q ss_pred             hHHHHHHHHHHHH
Q 039489          227 QTEVFKRNAVNKL  239 (304)
Q Consensus       227 a~E~~r~s~lsal  239 (304)
                      ..|-+|+.+-+|+
T Consensus       104 D~elvrkEl~nAl  116 (290)
T COG4026         104 DVELVRKELKNAL  116 (290)
T ss_pred             CHHHHHHHHHHHH
Confidence            4455555544444

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=88.49  E-value=5.3  Score=37.72  Aligned_cols=57  Identities=18%  Similarity=0.304  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          238 KLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQ  294 (304)
Q Consensus       238 al~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~  294 (304)
                      ...+.++.++..+..+...+-+.+..++.++....+..+..|..|+.|..+|...++
T Consensus       223 ~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~  279 (312)
T PF00038_consen  223 RQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMA  279 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence            334455555555555666666666666666666666666666666666666665554

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]

Probab=88.35  E-value=0.83  Score=42.13  Aligned_cols=88  Identities=15%  Similarity=0.325  Sum_probs=59.2

Q ss_pred             ceeecCCCceeeEEEEEecccc---cccCcccceeEEEeecccCCCC---CCeEEEecCCCceecCCCCcccCCC-cee-
Q 039489           60 ATFTHNDGRSVNLLQADGTVPM---PFQGVTYNIPVIIWLMESYPRH---PPCVYVNPTRDMIIKRPHPHVTPSG-LVS-  131 (304)
Q Consensus        60 ~~ft~~dG~~~~LL~L~GtIPi---~y~g~~ynIPi~Iwlp~~YP~~---pPivyV~pt~~m~I~~~~~~Vd~~G-~v~-  131 (304)
                      ..|....-..+  |.-.|-|=|   -|.|..|.+  .|.||++||..   |-+||=.   + .+   |++|++.. ... 
T Consensus        38 gIyviPSyan~--l~WFGViFvr~GiyaggVFRF--tIliPdnfPdd~dlPrvvF~q---~-vf---HP~icp~skeLdl  106 (258)
T KOG0429|consen   38 GIYVIPSYANK--LLWFGVIFVRKGIYAGGVFRF--TILIPDNFPDDSDLPRVVFEQ---S-VF---HPLICPKSKELDL  106 (258)
T ss_pred             ceEEccccccc--ceEEEEEEEecccccCceEEE--EEEcCccCCCcCCCCeEEeec---c-cc---ccccCCCccceeH
Confidence            45655544333  334555533   267777777  88999999943   4444432   2 44   99998844 333 


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHhcc
Q 039489          132 IPYLQNWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       132 lpyL~~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      .-.+.+|......|..++..|+.+|..
T Consensus       107 ~raf~eWRk~ehhiwqvL~ylqriF~d  133 (258)
T KOG0429|consen  107 NRAFPEWRKEEHHIWQVLVYLQRIFYD  133 (258)
T ss_pred             hhhhhhhhccccHHHHHHHHHHHHhcC
Confidence            456778998899999999999999974

>PRK12704 phosphodiesterase; Provisional

Probab=88.34  E-value=3.9  Score=42.22  Aligned_cols=33  Identities=33%  Similarity=0.451  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          261 LFSTQALLRRREEEIDRGLKELQDEREGLEQQL  293 (304)
Q Consensus       261 l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l  293 (304)
                      +.+.+.+|.++.+.|++-.+.|++++++|++.-
T Consensus        84 L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re  116 (520)
T PRK12704         84 LQKLEKRLLQKEENLDRKLELLEKREEELEKKE  116 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444555555555555555555554444333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=88.13  E-value=6.2  Score=36.89  Aligned_cols=58  Identities=17%  Similarity=0.189  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489          243 VHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS  300 (304)
Q Consensus       243 l~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~  300 (304)
                      +..+++.+.+...++.+.+.+++..+..-++.++..+..++++..++.+....|..++
T Consensus       115 l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l  172 (239)
T COG1579         115 LMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKL  172 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3334444444444555555555555555555555555555555555555555554443

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=87.99  E-value=5.6  Score=35.06  Aligned_cols=19  Identities=16%  Similarity=0.239  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHhhc
Q 039489          281 ELQDEREGLEQQLQIVLMN  299 (304)
Q Consensus       281 ~L~~E~~eLe~~l~~l~~~  299 (304)
                      +++++..+++..|+.+..+
T Consensus       117 ~~r~e~~~~~~ki~e~~~k  135 (177)
T PF07798_consen  117 RIREEQAKQELKIQELNNK  135 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555433

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=87.87  E-value=6.4  Score=35.44  Aligned_cols=33  Identities=33%  Similarity=0.535  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          263 STQALLRRREEEIDRGLKELQDEREGLEQQLQI  295 (304)
Q Consensus       263 ~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~  295 (304)
                      +.+.+|.++++.|++-.+.|+++.++|+..-..
T Consensus        82 ~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~  114 (201)
T PF12072_consen   82 RLEKRLQQREEQLDRRLEQLEKREEELEKKEEE  114 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555566655555555555555555555444

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=87.83  E-value=0.86  Score=40.30  Aligned_cols=44  Identities=20%  Similarity=0.284  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          249 GMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL  293 (304)
Q Consensus       249 ~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l  293 (304)
                      .+-...+..||.--=++.|| ++++.|...+++|+||..+|..++
T Consensus         4 D~EsklN~AIERnalLE~EL-dEKE~L~~~~QRLkDE~RDLKqEl   47 (166)
T PF04880_consen    4 DFESKLNQAIERNALLESEL-DEKENLREEVQRLKDELRDLKQEL   47 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHCH--------------
T ss_pred             HHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555577777 557778888888888888887777

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=87.81  E-value=4.8  Score=38.86  Aligned_cols=32  Identities=22%  Similarity=0.379  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489          266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVL  297 (304)
Q Consensus       266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~  297 (304)
                      .+|+.+.+.++..|++++.++.++..+|+.+.
T Consensus       233 ~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~  264 (325)
T PF08317_consen  233 AELQEELEELEEKIEELEEQKQELLAEIAEAE  264 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555555555443

>PF14712 Snapin_Pallidin: Snapin/Pallidin

Probab=87.77  E-value=7.2  Score=30.29  Aligned_cols=70  Identities=14%  Similarity=0.251  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHH---------HHHHHHHHHHHHHHHHHHHHhhccc
Q 039489          233 RNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREE--EID---------RGLKELQDEREGLEQQLQIVLMNSD  301 (304)
Q Consensus       233 ~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~--~l~---------~~I~~L~~E~~eLe~~l~~l~~~~~  301 (304)
                      -+.+.-..+++...+++++..+.++.+.+.++..+|++-.+  .+.         .-|..++++...+.+.++.+..+++
T Consensus         9 ~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~   88 (92)
T PF14712_consen    9 LSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRAD   88 (92)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667888888888888888888888888888866555  222         2234566666666666666666554


Q ss_pred             c
Q 039489          302 I  302 (304)
Q Consensus       302 ~  302 (304)
                      -
T Consensus        89 ~   89 (92)
T PF14712_consen   89 K   89 (92)
T ss_pred             h
Confidence            3

>PRK00106 hypothetical protein; Provisional

Probab=87.62  E-value=4.7  Score=41.88  Aligned_cols=26  Identities=27%  Similarity=0.403  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          266 ALLRRREEEIDRGLKELQDEREGLEQ  291 (304)
Q Consensus       266 ~eL~~~~~~l~~~I~~L~~E~~eLe~  291 (304)
                      ..|.++++.|++-.+.|++++++|++
T Consensus       104 ~rL~qREE~LekRee~LekrE~eLe~  129 (535)
T PRK00106        104 SRLTERATSLDRKDENLSSKEKTLES  129 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444433333

>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle

Probab=87.17  E-value=7.2  Score=30.91  Aligned_cols=57  Identities=19%  Similarity=0.213  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489          243 VHADITGMRKAREVEVEGLFSTQ------ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN  299 (304)
Q Consensus       243 l~~el~~l~~t~~ae~e~l~~~q------~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~  299 (304)
                      ++.|++...+..+........+.      .+++.-+.+|...|+.++...++|++.|..++.+
T Consensus         6 v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~n   68 (97)
T PF09177_consen    6 VKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKN   68 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44555555555555555555443      5788888999999999999999999999988765

Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=87.14  E-value=2.6  Score=42.98  Aligned_cols=48  Identities=15%  Similarity=0.251  Sum_probs=32.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489          252 KAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN  299 (304)
Q Consensus       252 ~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~  299 (304)
                      +..|++++.+++.-++|.+..+++++.|++|+.|.++|+++++.+..+
T Consensus        79 sELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~  126 (475)
T PRK13729         79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN  126 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            333444444433334455888888889999999999999888655443

>TIGR01069 mutS2 MutS2 family protein

Probab=87.07  E-value=3.7  Score=44.40  Aligned_cols=40  Identities=18%  Similarity=0.290  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDE  285 (304)
Q Consensus       246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E  285 (304)
                      +|++.+...+++++.+.+...++++.++++++..++|+++
T Consensus       519 ~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~  558 (771)
T TIGR01069       519 KLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER  558 (771)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444444444444444444444443333

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.04  E-value=3.8  Score=44.16  Aligned_cols=48  Identities=27%  Similarity=0.367  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 039489          247 ITGMRKAREVEVEGLFSTQALLRRR-EEEIDRGLKELQDEREGLEQQLQ  294 (304)
Q Consensus       247 l~~l~~t~~ae~e~l~~~q~eL~~~-~~~l~~~I~~L~~E~~eLe~~l~  294 (304)
                      .++.-++.+.|++....-|.||++. +++-++.|++++..++|||++-+
T Consensus       362 rqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElEkqRq  410 (1118)
T KOG1029|consen  362 RQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELEKQRQ  410 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444555543 44667778888888888887643

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.92  E-value=11  Score=28.95  Aligned_cols=36  Identities=19%  Similarity=0.433  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489          266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD  301 (304)
Q Consensus       266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~  301 (304)
                      +++....+.|++.-+.|+.|...+..+|..|+.+-|
T Consensus        42 q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkme   77 (79)
T COG3074          42 QNAQHQREALERENEQLKEEQNGWQERLRALLGKME   77 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            444555556666666777777777777777766543

>PRK10132 hypothetical protein; Provisional

Probab=86.90  E-value=5  Score=33.02  Aligned_cols=61  Identities=16%  Similarity=0.147  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          236 VNKLVEMVHADITGMRKAREVEVEGLFS-TQALLRRREEEIDRGLKELQDEREGLEQQLQIV  296 (304)
Q Consensus       236 lsal~dkl~~el~~l~~t~~ae~e~l~~-~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l  296 (304)
                      +.+-.++|+.|++.|.++.++++..... ...++.+=+++++..++..++...+++...+..
T Consensus        10 ~~~q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~   71 (108)
T PRK10132         10 VDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTRVQQAA   71 (108)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            4556688999999999999888754443 336677777777777777777666665544333

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=86.84  E-value=5  Score=32.11  Aligned_cols=33  Identities=27%  Similarity=0.496  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489          266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~  298 (304)
                      ++|..+...+++.|..++.+..+++..+..+..
T Consensus        70 ~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~  102 (108)
T PF02403_consen   70 EELKAEVKELKEEIKELEEQLKELEEELNELLL  102 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678888888999999999999999988887754

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=86.73  E-value=3.7  Score=44.44  Aligned_cols=8  Identities=38%  Similarity=0.268  Sum_probs=3.5

Q ss_pred             eeEEEeec
Q 039489           90 IPVIIWLM   97 (304)
Q Consensus        90 IPi~Iwlp   97 (304)
                      ||..|-|.
T Consensus       317 Vpndi~l~  324 (782)
T PRK00409        317 VPKDISLG  324 (782)
T ss_pred             ECceeEEC
Confidence            44444443

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=86.46  E-value=4.6  Score=34.78  Aligned_cols=54  Identities=22%  Similarity=0.273  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          243 VHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIV  296 (304)
Q Consensus       243 l~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l  296 (304)
                      .++++..+....+.....+..+.   .-|+.++..|++++..++.+..+||.....+
T Consensus        50 ~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~  106 (140)
T PF10473_consen   50 SKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSL  106 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            34444444444444444444444   3334555566666666666666666655544

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=86.44  E-value=8.3  Score=37.35  Aligned_cols=24  Identities=21%  Similarity=0.279  Sum_probs=11.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          227 QTEVFKRNAVNKLVEMVHADITGM  250 (304)
Q Consensus       227 a~E~~r~s~lsal~dkl~~el~~l  250 (304)
                      .+|.+..+.|-+-.+.++.+-+.|
T Consensus        73 qEEE~isN~LlKkl~~l~keKe~L   96 (310)
T PF09755_consen   73 QEEEFISNTLLKKLQQLKKEKETL   96 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444454444444

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=86.34  E-value=6.8  Score=35.09  Aligned_cols=30  Identities=30%  Similarity=0.572  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489          272 EEEIDRGLKELQDEREGLEQQLQIVLMNSD  301 (304)
Q Consensus       272 ~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~  301 (304)
                      ...++.-|..|+.+.++|+..+..+..+.|
T Consensus       122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e  151 (189)
T PF10211_consen  122 KQELEEEIEELEEEKEELEKQVQELKNKCE  151 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555555555544433

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]

Probab=86.32  E-value=2.7  Score=39.46  Aligned_cols=74  Identities=19%  Similarity=0.263  Sum_probs=51.8

Q ss_pred             eeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceecccc----ccccCCCCCH
Q 039489           70 VNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYL----QNWIYPSSNL  145 (304)
Q Consensus        70 ~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL----~~W~~~~s~L  145 (304)
                      +--+.+.|+.-..|.|..|+=  .|.||-+||+.||-+.+. |++      +++ .-|-+|||-+-    ..|.+ +.++
T Consensus        41 EWhFtiRGp~dtdFeGGiYHG--RI~lPadYPmKPPs~iLL-TpN------GRF-E~nkKiCLSISgyHPEtWqP-SWSi  109 (314)
T KOG0428|consen   41 EWHFTIRGPPDTDFEGGIYHG--RIVLPADYPMKPPSIILL-TPN------GRF-EVNKKICLSISGYHPETWQP-SWSI  109 (314)
T ss_pred             eEEEEeeCCCCCCccCceeee--eEecCCCCCCCCCeEEEE-cCC------Cce-eeCceEEEEecCCCccccCc-chhH
Confidence            344789999999999999997  789999999999987663 543      332 44556665432    26775 5566


Q ss_pred             HHHHHHHHH
Q 039489          146 VDLVRELSA  154 (304)
Q Consensus       146 ~~Lv~~l~~  154 (304)
                      ...+-.|+.
T Consensus       110 RTALlAlIg  118 (314)
T KOG0428|consen  110 RTALLALIG  118 (314)
T ss_pred             HHHHHHHHc
Confidence            555555554

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=86.08  E-value=6.1  Score=40.31  Aligned_cols=32  Identities=16%  Similarity=0.395  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489          266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVL  297 (304)
Q Consensus       266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~  297 (304)
                      +.|...+.++++..+.|++|+..++..|+.|.
T Consensus       105 ~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~  136 (472)
T TIGR03752       105 QAVQSETQELTKEIEQLKSERQQLQGLIDQLQ  136 (472)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555555555553

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=85.85  E-value=11  Score=28.75  Aligned_cols=33  Identities=30%  Similarity=0.473  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489          266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~  298 (304)
                      ..|+....++++.+..|..+.++++..++.+..
T Consensus        36 KKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~   68 (74)
T PF12329_consen   36 KKLRAKIKELEKQIKELKKKLEELEKELESLEE   68 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445555555565666665555555544

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=85.82  E-value=13  Score=35.61  Aligned_cols=48  Identities=19%  Similarity=0.197  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          243 VHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLE  290 (304)
Q Consensus       243 l~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe  290 (304)
                      .|.+-++-+.....|.++|.+..++||.+-..+++.|+.|++-..|.-
T Consensus       242 YRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~  289 (294)
T KOG4571|consen  242 YRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY  289 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445555667888999999999999999999999998776654

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=85.58  E-value=6.7  Score=37.00  Aligned_cols=30  Identities=10%  Similarity=0.272  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039489          236 VNKLVEMVHADITGMRKAREVEVEGLFSTQ  265 (304)
Q Consensus       236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q  265 (304)
                      |++....++++-+.+.+...+++++.++.+
T Consensus       167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k  196 (312)
T PF00038_consen  167 LSAALREIRAQYEEIAQKNREELEEWYQSK  196 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhHHHHHHHHHhhhhhhhhhhcccc
Confidence            444444444444444444455555544444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK12705 hypothetical protein; Provisional

Probab=85.38  E-value=7.3  Score=40.24  Aligned_cols=33  Identities=21%  Similarity=0.372  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          264 TQALLRRREEEIDRGLKELQDEREGLEQQLQIV  296 (304)
Q Consensus       264 ~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l  296 (304)
                      .+.+|.++++.|++-.+.|+++.++|++.-+.+
T Consensus        82 ~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l  114 (508)
T PRK12705         82 EEERLVQKEEQLDARAEKLDNLENQLEEREKAL  114 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555666666666666666555555444433

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=85.35  E-value=7.5  Score=35.80  Aligned_cols=13  Identities=0%  Similarity=-0.194  Sum_probs=7.4

Q ss_pred             ChHHHHHHHHHHH
Q 039489          226 DQTEVFKRNAVNK  238 (304)
Q Consensus       226 ~a~E~~r~s~lsa  238 (304)
                      .+..|..+.+..+
T Consensus        84 ~a~~~~~~~l~ra   96 (216)
T KOG1962|consen   84 LARTHLLEALFRA   96 (216)
T ss_pred             HHHHHHHHHHHHH
Confidence            4556665555555

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=85.31  E-value=7.2  Score=41.90  Aligned_cols=72  Identities=19%  Similarity=0.308  Sum_probs=41.6

Q ss_pred             hHHHHHHHHHH---HHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489          227 QTEVFKRNAVN---KLVEMVHADITGMRKA---REVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       227 a~E~~r~s~ls---al~dkl~~el~~l~~t---~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~  298 (304)
                      +.+.+|..=+.   .+-+.++.+++.|...   +.++++.+......|++..++|.+-+++..++.+.|.++++.++.
T Consensus       544 a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~  621 (717)
T PF10168_consen  544 ATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQ  621 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555544222   2333344443333333   333444444444677777777888888888888888888887643

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK11637 AmiB activator; Provisional

Probab=85.30  E-value=11  Score=37.54  Aligned_cols=29  Identities=17%  Similarity=0.242  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          268 LRRREEEIDRGLKELQDEREGLEQQLQIV  296 (304)
Q Consensus       268 L~~~~~~l~~~I~~L~~E~~eLe~~l~~l  296 (304)
                      |+....+.+..|.+|+++.+.|++.|..+
T Consensus       224 L~~~~~~~~~~l~~l~~~~~~L~~~I~~l  252 (428)
T PRK11637        224 LESSLQKDQQQLSELRANESRLRDSIARA  252 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444444444444443

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=85.13  E-value=5.8  Score=42.24  Aligned_cols=64  Identities=20%  Similarity=0.366  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 039489          240 VEMVHADITGMRKAREVEVEGLFSTQ----ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDIL  303 (304)
Q Consensus       240 ~dkl~~el~~l~~t~~ae~e~l~~~q----~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~  303 (304)
                      ++-.+++|+++.+..++++..|....    +.|...-+.|++.++.|+.++....+.+......+|+|
T Consensus       135 EE~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L  202 (739)
T PF07111_consen  135 EEGSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLL  202 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567777777777888877776644    56677777788888888887777777777666655554

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=84.94  E-value=7.1  Score=40.98  Aligned_cols=42  Identities=21%  Similarity=0.132  Sum_probs=24.1

Q ss_pred             CeEEEecCCCceecCCCCcccCCCceecccc-ccccCCCCCHHHHHHHH
Q 039489          105 PCVYVNPTRDMIIKRPHPHVTPSGLVSIPYL-QNWIYPSSNLVDLVREL  152 (304)
Q Consensus       105 PivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL-~~W~~~~s~L~~Lv~~l  152 (304)
                      =||=|+|--+-.|    ..+|-+|.+.+-+= .+|.  .+.++.+|..+
T Consensus       245 lIVGIDPGiTtgi----AvldldGevl~~~S~r~~~--~~eVve~I~~l  287 (652)
T COG2433         245 LIVGIDPGITTGI----AVLDLDGEVLDLESRRGID--RSEVVEFISEL  287 (652)
T ss_pred             eEEEeCCCceeeE----EEEecCCcEEeeeccccCC--HHHHHHHHHHc
Confidence            4566666433333    34799998765332 2555  56666666554

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=84.73  E-value=8.7  Score=32.71  Aligned_cols=57  Identities=12%  Similarity=0.193  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489          245 ADITGMRKAREVEVEGLFSTQ--ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD  301 (304)
Q Consensus       245 ~el~~l~~t~~ae~e~l~~~q--~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~  301 (304)
                      .+-.+|+..--|.-=..++++  .||++.+..|...|+.|.+|..++..++..++.+-+
T Consensus        54 QrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e  112 (135)
T KOG4196|consen   54 QRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYE  112 (135)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334433334444444554  677777777877888887777777777776665543

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=84.56  E-value=5  Score=30.66  Aligned_cols=13  Identities=46%  Similarity=0.667  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHHHH
Q 039489          277 RGLKELQDEREGL  289 (304)
Q Consensus       277 ~~I~~L~~E~~eL  289 (304)
                      +-+++++.+.+.|
T Consensus        54 ~~~~~~e~~~~~l   66 (74)
T PF12329_consen   54 KKLEELEKELESL   66 (74)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=84.53  E-value=8.2  Score=39.85  Aligned_cols=25  Identities=40%  Similarity=0.617  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          266 ALLRRREEEIDRGLKELQDEREGLE  290 (304)
Q Consensus       266 ~eL~~~~~~l~~~I~~L~~E~~eLe  290 (304)
                      ..|.++.+.|++-.+.|++++++|+
T Consensus        83 ~rL~qRee~Lekr~e~Lekre~~Le  107 (514)
T TIGR03319        83 RRLLQREETLDRKMESLDKKEENLE  107 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444333333

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=84.49  E-value=4.6  Score=40.66  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 039489          274 EIDRGLKELQDEREGLEQQLQIV  296 (304)
Q Consensus       274 ~l~~~I~~L~~E~~eLe~~l~~l  296 (304)
                      .++..|.+.+.+.+++++.|..+
T Consensus        77 ~~~~ql~~s~~~l~~~~~~I~~~   99 (420)
T COG4942          77 SLEAQLIETADDLKKLRKQIADL   99 (420)
T ss_pred             HHHHHHHHHHhHHHHHHhhHHHH
Confidence            33333444444444444444433

>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family

Probab=84.36  E-value=17  Score=31.19  Aligned_cols=70  Identities=10%  Similarity=0.107  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489          232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALL---RRREEEIDRGLKELQDEREGLEQQLQIVLMNSD  301 (304)
Q Consensus       232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL---~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~  301 (304)
                      +.+.+++..++....++++..........|..++...   ++.+.+|...+.........-|+.|++|...++
T Consensus        20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe   92 (135)
T TIGR03495        20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENE   92 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence            3455666666666666666666555555555555443   334445555555555555555555555544443

Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=84.19  E-value=19  Score=28.49  Aligned_cols=71  Identities=15%  Similarity=0.225  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489          228 TEVFKRNAVNKLVEMVHADITGMRK--AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       228 ~E~~r~s~lsal~dkl~~el~~l~~--t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~  298 (304)
                      +-.-...+|+.++..+..++....+  ..+++++.+..-.++|.++=.+.+.-.++|+.-..|+.+.|.....
T Consensus         9 al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e   81 (89)
T PF13747_consen    9 ALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIE   81 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344667888888888888877766  5566666666666777777777777777777777777777765543

>COG4575 ElaB Uncharacterized conserved protein [Function unknown]

Probab=84.02  E-value=5.7  Score=32.54  Aligned_cols=50  Identities=14%  Similarity=0.098  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          241 EMVHADITGMRKAREVEVEGLFSTQ-ALLRRREEEIDRGLKELQDEREGLE  290 (304)
Q Consensus       241 dkl~~el~~l~~t~~ae~e~l~~~q-~eL~~~~~~l~~~I~~L~~E~~eLe  290 (304)
                      +++.+|+++|.++.++.+.+.-+.- .|+++=+++++..|++.++...+..
T Consensus        11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~   61 (104)
T COG4575          11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTG   61 (104)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            8899999999999999988877655 7777778888888888888777773

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=83.95  E-value=1.7  Score=35.50  Aligned_cols=36  Identities=22%  Similarity=0.369  Sum_probs=17.2

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          256 VEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQ  291 (304)
Q Consensus       256 ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~  291 (304)
                      ++++.+.+-.++|+++.++|++.|+.|++..+-+|+
T Consensus        34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe   69 (105)
T PRK00888         34 DQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEE   69 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHH
Confidence            333334444445555555555555555554344443

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=83.80  E-value=10  Score=32.91  Aligned_cols=38  Identities=32%  Similarity=0.437  Sum_probs=20.5

Q ss_pred             HHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          254 REVEVEGLFST--QALLRRREEEIDRGLKELQDEREGLEQ  291 (304)
Q Consensus       254 ~~ae~e~l~~~--q~eL~~~~~~l~~~I~~L~~E~~eLe~  291 (304)
                      .++|+..|.+.  ..+|...-+.+++.++.|+.+.+.|..
T Consensus        98 l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   98 LEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444442  255666666666666666666655544

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function

Probab=83.76  E-value=7.2  Score=39.24  Aligned_cols=63  Identities=17%  Similarity=0.292  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          234 NAVNKLVEMVHADITGMRKAREVEVE---------GLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV  296 (304)
Q Consensus       234 s~lsal~dkl~~el~~l~~t~~ae~e---------~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l  296 (304)
                      +.+.+...+++.+++++.+......+         ...+....|++...++.+.+++|+++.++|+..++..
T Consensus       337 ~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~  408 (451)
T PF03961_consen  337 EELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS  408 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44455555555555555554333322         1223346777777888888888888888888888877

The proteins are in the region of 500-600 amino acid residues in length.

>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein)

Probab=83.63  E-value=10  Score=29.32  Aligned_cols=64  Identities=14%  Similarity=0.268  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489          234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRR-REEEIDRGLKELQDEREGLEQQLQIVL  297 (304)
Q Consensus       234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~-~~~~l~~~I~~L~~E~~eLe~~l~~l~  297 (304)
                      .+|++|...++.|+..+.-..+++-+.+++++.-+.. .+..|...|+.|-++.+.=-.+|.+|.
T Consensus        13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~   77 (79)
T PF06657_consen   13 EALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKLY   77 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5677888888889999999999998888888844433 344566666555555555555555543

It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=83.62  E-value=6.9  Score=34.67  Aligned_cols=32  Identities=16%  Similarity=0.360  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489          270 RREEEIDRGLKELQDEREGLEQQLQIVLMNSD  301 (304)
Q Consensus       270 ~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~  301 (304)
                      ++.++.++.|++|++|.++.|..++.|.++.+
T Consensus       154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~  185 (192)
T PF05529_consen  154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSE  185 (192)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555555554443

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=83.58  E-value=16  Score=33.15  Aligned_cols=72  Identities=13%  Similarity=0.158  Sum_probs=41.7

Q ss_pred             hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489          227 QTEVFKRNAVNKLVEMVH---ADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       227 a~E~~r~s~lsal~dkl~---~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~  298 (304)
                      +..+|||-.|.+-...+.   ++-++--.+.+++++-...-+++...++....+....|+.|+.+...+|..|..
T Consensus       101 A~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~  175 (192)
T PF11180_consen  101 ADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQR  175 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566676655544443333   333444445555555555555666666666666666666666666666655543

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=83.55  E-value=15  Score=34.47  Aligned_cols=33  Identities=12%  Similarity=0.166  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039489          234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQA  266 (304)
Q Consensus       234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~  266 (304)
                      ++|..-.+.++.++.+|++...+.++.+.+++.
T Consensus        92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~  124 (239)
T COG1579          92 RALNIEIQIAKERINSLEDELAELMEEIEKLEK  124 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444443

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=83.50  E-value=19  Score=28.09  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489          264 TQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN  299 (304)
Q Consensus       264 ~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~  299 (304)
                      +...|+.+.+.+++-|+.|+.+.+.+++.+..+..+
T Consensus        63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~   98 (106)
T PF01920_consen   63 AIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK   98 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            447888899999999999999999999988887654

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>PRK11637 AmiB activator; Provisional

Probab=83.46  E-value=8  Score=38.58  Aligned_cols=29  Identities=3%  Similarity=0.018  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 039489          249 GMRKAREVEVEGLFSTQALLRRREEEIDR  277 (304)
Q Consensus       249 ~l~~t~~ae~e~l~~~q~eL~~~~~~l~~  277 (304)
                      +.++..+++++.+..+..+++..+.+|+.
T Consensus       184 ~~k~~le~~~~~l~~~~~e~~~~k~~L~~  212 (428)
T PRK11637        184 AQKAELEEKQSQQKTLLYEQQAQQQKLEQ  212 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444444444443333

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=83.42  E-value=16  Score=32.03  Aligned_cols=39  Identities=18%  Similarity=0.342  Sum_probs=25.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489          260 GLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       260 ~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~  298 (304)
                      .+..++..++++..+|...|+.|+.+...|+..+..+..
T Consensus        79 ~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~  117 (158)
T PF09744_consen   79 ELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSD  117 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            344445667777777777777777777777755554433

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>COG3937 Uncharacterized conserved protein [Function unknown]

Probab=83.40  E-value=8.5  Score=31.69  Aligned_cols=69  Identities=17%  Similarity=0.182  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHH-----------HHHHHHHHHHHHHHHHhh
Q 039489          231 FKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRR-EEEIDRGLK-----------ELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       231 ~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~-~~~l~~~I~-----------~L~~E~~eLe~~l~~l~~  298 (304)
                      +...++++++++-.--.++-++-.++.|.....-+.++... ..+++.++.           .|+.+.++|+++++.|.+
T Consensus        25 k~~klvDelVkkGeln~eEak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Len  104 (108)
T COG3937          25 KVQKLVDELVKKGELNAEEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLEN  104 (108)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555444444556666666666666555555443 335555554           444667777777777765


Q ss_pred             c
Q 039489          299 N  299 (304)
Q Consensus       299 ~  299 (304)
                      +
T Consensus       105 k  105 (108)
T COG3937         105 K  105 (108)
T ss_pred             H
Confidence            4

>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.37  E-value=4.2  Score=37.35  Aligned_cols=66  Identities=15%  Similarity=0.210  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489          233 RNAVNKLVEMVHA-DITGMRKAREVEVEGLFSTQ----ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       233 ~s~lsal~dkl~~-el~~l~~t~~ae~e~l~~~q----~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~  298 (304)
                      ..+|..+++||+. ++.+.-.+.+++|..+.+-|    =-|.++--.+|..|+++..+.+|||++|..|..
T Consensus         6 ~qlle~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~   76 (233)
T COG3416           6 KQLLENLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQA   76 (233)
T ss_pred             HHHHHHHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4567777777764 56666678888888888877    457777778899999999999999999998865

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=83.34  E-value=17  Score=30.77  Aligned_cols=24  Identities=8%  Similarity=-0.031  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHH
Q 039489          242 MVHADITGMRKAREVEVEGLFSTQ  265 (304)
Q Consensus       242 kl~~el~~l~~t~~ae~e~l~~~q  265 (304)
                      .|..+|+.+-+..++-+|-...++
T Consensus        65 hLsqRId~vd~klDe~~ei~~~i~   88 (126)
T PF07889_consen   65 HLSQRIDRVDDKLDEQKEISKQIK   88 (126)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHH
Confidence            333444444444444444333333

The region featured in this family is approximately 100 amino acids long.

>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins

Probab=83.14  E-value=3.6  Score=38.60  Aligned_cols=64  Identities=20%  Similarity=0.226  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          232 KRNAVNKLVEMVHA-DITGMRKAREVEVEGLFSTQ----ALLRRREEEIDRGLKELQDEREGLEQQLQI  295 (304)
Q Consensus       232 r~s~lsal~dkl~~-el~~l~~t~~ae~e~l~~~q----~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~  295 (304)
                      -+.+|..+++||+. +....-...+++|....+-|    =-|.+.--..|..|++++.+.++||.+|+.
T Consensus         5 E~qLI~~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q   73 (247)
T PF09849_consen    5 ERQLIDDLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ   73 (247)
T ss_pred             HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36788899998876 55555556777777777766    456666677888999999999999999865

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=82.97  E-value=12  Score=33.49  Aligned_cols=14  Identities=36%  Similarity=0.596  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHHHH
Q 039489          280 KELQDEREGLEQQL  293 (304)
Q Consensus       280 ~~L~~E~~eLe~~l  293 (304)
                      +.|+++.++|+..+
T Consensus       113 ~~l~~~~~~l~~el  126 (188)
T PF03962_consen  113 EELKKELKELKKEL  126 (188)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PF06595 BDV_P24: Borna disease virus P24 protein; InterPro: IPR009517 Borna disease virus (BDV) is a non-cytolytic, neurotropic RNA virus that has a broad host range in warm-blooded animals

Probab=82.87  E-value=9.4  Score=33.79  Aligned_cols=78  Identities=15%  Similarity=0.250  Sum_probs=50.2

Q ss_pred             ChHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
Q 039489          226 DQTEVFKRNAVNKLVEM-------VHADITGMRKAREVEVEGLFSTQALLRRREE---------EIDRGLKELQDEREGL  289 (304)
Q Consensus       226 ~a~E~~r~s~lsal~dk-------l~~el~~l~~t~~ae~e~l~~~q~eL~~~~~---------~l~~~I~~L~~E~~eL  289 (304)
                      .+-|+..+.++.++.|.       ++..|..+-.+.++-.|+|..+|.|+-+--+         .|-++|+.|++-.+.+
T Consensus        69 LSndeLikqLvtElae~~mieaE~l~~~L~~i~~r~e~g~ESLSsLQ~Etl~~iq~~Dya~SIk~lGEN~kvLDRS~Ktm  148 (201)
T PF06595_consen   69 LSNDELIKQLVTELAENSMIEAEGLKGSLDDIAQRMESGLESLSSLQIETLQAIQQSDYADSIKQLGENIKVLDRSMKTM  148 (201)
T ss_pred             hchHHHHHHHHHHHhhccchhHHHhhccHHHHHHHHHHhHHHHHHHHHHHHHHHHhhchhHHHHHHcchhhHHHHHHHHH
Confidence            35567777888888754       5666677777888889999999966655433         3334455555555555


Q ss_pred             HHHHHHHhhccccc
Q 039489          290 EQQLQIVLMNSDIL  303 (304)
Q Consensus       290 e~~l~~l~~~~~~~  303 (304)
                      -.-...+.++.|+|
T Consensus       149 ~eTmklMmEKiDLL  162 (201)
T PF06595_consen  149 METMKLMMEKIDLL  162 (201)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44455555666554

BDV is an enveloped virus, non-segmented, negative-stranded RNA genome and has an organisation characteristic of a member of Bornaviridae in the order of Mononegavirale. This family consists of several BDV P24 (phosphoprotein 24) proteins. They are essential components of the RNA polymerase transcription and replication complex. P24 is encoded by open reading frame II (ORF-II) and undergoes high rates of mutation in humans. They bind amphoterin-HMGB1, a multifunctional protein, directly may cause deleterious effects in cellular functions by its interference with HMGB1 []. Horse and human P24 have no species-specific amino acid residues, suggesting that the two viruses related [, ]. Numerous interactions of the immune system with the central nervous system have been described. Mood and psychotic disorders, such as severe depression and schizophrenia, are both heterogeneous disorders regarding clinical symptomatology, the acuity of symptoms, the clinical course and the treatment response []. BDV p24 RNA has been detected in the peripheral blood mononuclear cells (PBMCs) of psychiatric patients with such conditions []. Some studies find a significant difference in the prevalence of BDV p24 RNA in patients with mood disorders and schizophrenia [], whilst others find no difference between patients and control groups []. Consequently, debate about the role of BDV in psychiatric diseases remains alive.

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=82.68  E-value=14  Score=35.11  Aligned_cols=63  Identities=24%  Similarity=0.372  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Q 039489          234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQ----------DEREGLEQQLQIV  296 (304)
Q Consensus       234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~----------~E~~eLe~~l~~l  296 (304)
                      ..|.+....+..+++...+.....-..-..+++.+++++.+|++.=++|+          +|-+.||.+|+.+
T Consensus       165 ~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l  237 (267)
T PF10234_consen  165 KALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL  237 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            34445555566666666666666666666777777777777777766665          4666666666654

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=82.52  E-value=13  Score=36.61  Aligned_cols=67  Identities=16%  Similarity=0.156  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          230 VFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRR---EEEIDRGLKELQDEREGLEQQLQIV  296 (304)
Q Consensus       230 ~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~---~~~l~~~I~~L~~E~~eLe~~l~~l  296 (304)
                      .+...-+++..||+..+=+-+..+.+.+++.....+.+|.+-   -+....+|.++.++..++...|+.+
T Consensus       244 ~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~v  313 (359)
T PF10498_consen  244 DKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQV  313 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            345566777777888877888888888888877777444443   3355566666666666665555544

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=82.49  E-value=21  Score=30.29  Aligned_cols=34  Identities=18%  Similarity=0.224  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039489          232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ  265 (304)
Q Consensus       232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q  265 (304)
                      .+..+....-++.+++..+....+.+.+.+...+
T Consensus        53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~e   86 (151)
T PF11559_consen   53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELE   86 (151)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444443333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]

Probab=82.40  E-value=16  Score=36.67  Aligned_cols=72  Identities=22%  Similarity=0.214  Sum_probs=59.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489          226 DQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIVL  297 (304)
Q Consensus       226 ~a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~  297 (304)
                      +..+-++++....+.+.-..--+...++.+.+.+.+..++   .+|.++=++|...+..|..++..||+++..+.
T Consensus        44 ~~s~~ir~~sr~l~~e~~~~t~~~q~dtt~~L~~R~~di~~Wk~el~~ele~l~~E~~~L~~~k~rle~~L~~~~  118 (421)
T KOG2685|consen   44 DQSERIRRESRLLVNETNALTDKMQRDTTEKLGQRLDDVNFWKGELDRELEDLAAEIDDLLHEKRRLERALNALA  118 (421)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4556677777776766666666777888888888888887   99999999999999999999999999998764

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=82.35  E-value=12  Score=33.20  Aligned_cols=35  Identities=20%  Similarity=0.226  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489          266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS  300 (304)
Q Consensus       266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~  300 (304)
                      +.++++-+++++.|++.+.+.+.|.++.+.+...=
T Consensus       157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey  191 (192)
T PF05529_consen  157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY  191 (192)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            56666667777777778888888888888776543

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases

Probab=82.15  E-value=13  Score=33.12  Aligned_cols=29  Identities=10%  Similarity=0.143  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 039489          234 NAVNKLVEMVHADITGMRKAREVEVEGLF  262 (304)
Q Consensus       234 s~lsal~dkl~~el~~l~~t~~ae~e~l~  262 (304)
                      .-|+..+++|...++.-.+..++|++.|.
T Consensus       105 qeL~~tf~rL~~~Vd~~~~eL~~eI~~L~  133 (171)
T PF04799_consen  105 QELSSTFARLCQQVDQTKNELEDEIKQLE  133 (171)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444443333

Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.

>TIGR00414 serS seryl-tRNA synthetase

Probab=82.08  E-value=9.7  Score=38.19  Aligned_cols=32  Identities=28%  Similarity=0.377  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489          266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVL  297 (304)
Q Consensus       266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~  297 (304)
                      ++|+.+..++++.|..|+++.++++..+..+.
T Consensus        72 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  103 (418)
T TIGR00414        72 EEIKKELKELKEELTELSAALKALEAELQDKL  103 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46666777777777778888877777776654

This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.

>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases

Probab=81.96  E-value=10  Score=33.69  Aligned_cols=43  Identities=14%  Similarity=0.108  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039489          233 RNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEI  275 (304)
Q Consensus       233 ~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l  275 (304)
                      ..+|...+|..++||++-.++.+.+++.+..+|.+++.=+++.
T Consensus       111 f~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa  153 (171)
T PF04799_consen  111 FARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKA  153 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666666666666666666666666665554444433

Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=81.92  E-value=8.4  Score=40.08  Aligned_cols=60  Identities=20%  Similarity=0.223  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489          239 LVEMVHADITGMRKAREVEVEGLFSTQALLR--------------RREEEIDRGLKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       239 l~dkl~~el~~l~~t~~ae~e~l~~~q~eL~--------------~~~~~l~~~I~~L~~E~~eLe~~l~~l~~  298 (304)
                      ...+|.+|++.+-+..+++...-.+++.+|.              ++-.+++++++.++.|+++|..+-+.|+.
T Consensus       372 ~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~  445 (546)
T PF07888_consen  372 EIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLE  445 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555544444444443333              33335667777777777666666665543

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=81.90  E-value=20  Score=30.85  Aligned_cols=48  Identities=23%  Similarity=0.292  Sum_probs=27.2

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489          253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS  300 (304)
Q Consensus       253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~  300 (304)
                      +.++++++|..--..|..+.+.++..+..|..|++.|++.++....+.
T Consensus        49 n~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv   96 (140)
T PF10473_consen   49 NSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKV   96 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444455566666666666666666666666666554443

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PHA01750 hypothetical protein

Probab=81.78  E-value=8.4  Score=29.14  Aligned_cols=26  Identities=15%  Similarity=0.348  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          231 FKRNAVNKLVEMVHADITGMRKAREV  256 (304)
Q Consensus       231 ~r~s~lsal~dkl~~el~~l~~t~~a  256 (304)
                      ++.++-+|+.|.++.|+..|+.+.++
T Consensus        28 IKq~lkdAvkeIV~~ELdNL~~ei~~   53 (75)
T PHA01750         28 IKQALKDAVKEIVNSELDNLKTEIEE   53 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555666666666666655554433

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=81.71  E-value=13  Score=38.71  Aligned_cols=7  Identities=14%  Similarity=0.378  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q 039489          281 ELQDERE  287 (304)
Q Consensus       281 ~L~~E~~  287 (304)
                      .|..+.+
T Consensus       210 ~L~~q~~  216 (546)
T PF07888_consen  210 SLKEQLA  216 (546)
T ss_pred             HHHHHHH
Confidence            3333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=81.35  E-value=13  Score=35.98  Aligned_cols=43  Identities=21%  Similarity=0.481  Sum_probs=20.0

Q ss_pred             CCcccCCCceeccccc--cccCC-----CCCHHHHHHHHHH-HhccCCCCCC
Q 039489          121 HPHVTPSGLVSIPYLQ--NWIYP-----SSNLVDLVRELSA-CFSREPPLYS  164 (304)
Q Consensus       121 ~~~Vd~~G~v~lpyL~--~W~~~-----~s~L~~Lv~~l~~-~F~~~pPl~~  164 (304)
                      +.+|.+ |.|.+|.|.  .|.-.     -+..-.+++++.. ++...||||.
T Consensus        57 ~~~~~A-~~~~~P~Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~  107 (325)
T PF08317_consen   57 EDYVVA-GYCTVPMLELYQFSCRELKKYISEGRQIFEEIEEETYESNPPLFR  107 (325)
T ss_pred             HHHHHH-hccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH
Confidence            444443 555667776  33310     1133344444444 3344566664

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]

Probab=81.22  E-value=18  Score=32.36  Aligned_cols=68  Identities=22%  Similarity=0.257  Sum_probs=34.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489          226 DQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN  299 (304)
Q Consensus       226 ~a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~  299 (304)
                      +.+.....--+.++.+++|+-.++.+. .++|+..|.+.-   .  -+++++.|.+|+.|..+.+++|..+.+.
T Consensus        78 ~eel~~ld~~i~~l~ek~q~l~~t~s~-veaEik~L~s~L---t--~eemQe~i~~L~kev~~~~erl~~~k~g  145 (201)
T KOG4603|consen   78 DEELQVLDGKIVALTEKVQSLQQTCSY-VEAEIKELSSAL---T--TEEMQEEIQELKKEVAGYRERLKNIKAG  145 (201)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc---C--hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455555666666666666655444443 344444444322   1  1234455555555555555555555443

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=81.15  E-value=17  Score=37.07  Aligned_cols=22  Identities=14%  Similarity=0.261  Sum_probs=16.5

Q ss_pred             eeccccccccCCCCCHHHHHHH
Q 039489          130 VSIPYLQNWIYPSSNLVDLVRE  151 (304)
Q Consensus       130 v~lpyL~~W~~~~s~L~~Lv~~  151 (304)
                      +++..|..|..-++-+-.+++.
T Consensus       201 fh~~cl~~w~~~scpvcR~~q~  222 (493)
T KOG0804|consen  201 FHCSCLMKWWDSSCPVCRYCQS  222 (493)
T ss_pred             cchHHHhhcccCcChhhhhhcC
Confidence            4678899998777777666655

>COG1422 Predicted membrane protein [Function unknown]

Probab=81.12  E-value=17  Score=33.18  Aligned_cols=24  Identities=17%  Similarity=0.217  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Q 039489          275 IDRGLKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       275 l~~~I~~L~~E~~eLe~~l~~l~~  298 (304)
                      -++.+++|++|+.|+-+--.++.+
T Consensus        96 d~~~lkkLq~~qmem~~~Q~elmk  119 (201)
T COG1422          96 DMKKLKKLQEKQMEMMDDQRELMK  119 (201)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455788888888887655544443

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=81.07  E-value=4.3  Score=43.87  Aligned_cols=10  Identities=20%  Similarity=0.624  Sum_probs=5.2

Q ss_pred             CHHHHHHHHH
Q 039489          144 NLVDLVRELS  153 (304)
Q Consensus       144 ~L~~Lv~~l~  153 (304)
                      +|..||..|+
T Consensus       455 d~~~liD~~v  464 (1102)
T KOG1924|consen  455 DLTELIDKMV  464 (1102)
T ss_pred             cHHHHHHHHH
Confidence            5555555544

>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria

Probab=80.81  E-value=13  Score=33.95  Aligned_cols=72  Identities=17%  Similarity=0.167  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 039489          232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ----ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDIL  303 (304)
Q Consensus       232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q----~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~  303 (304)
                      ||-++-.-++..+.-.++.+.+...-++.+..+-    .+|+..=+.+++..+..++.-+++..+|..+++.+|+|
T Consensus        22 KRdilvdrVe~Ardsq~eaqeQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~AL   97 (201)
T PF11172_consen   22 KRDILVDRVEDARDSQQEAQEQFKSALEQFKSLVNFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADAL   97 (201)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344333344455555555555555555555543    89999999999999999999999999999999888765

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=80.63  E-value=21  Score=31.98  Aligned_cols=50  Identities=18%  Similarity=0.257  Sum_probs=40.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 039489          227 QTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEID  276 (304)
Q Consensus       227 a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~  276 (304)
                      -+|..|-.-|..|...|+..|+....+.+++.+.+.++.+++.+-.++|+
T Consensus        70 eEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~  119 (182)
T PF15035_consen   70 EEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE  119 (182)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777888899999999999999999999999999997755555444333

>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species

Probab=80.38  E-value=9.3  Score=35.14  Aligned_cols=37  Identities=35%  Similarity=0.505  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489          262 FSTQALLRRREE---EIDRGLKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       262 ~~~q~eL~~~~~---~l~~~I~~L~~E~~eLe~~l~~l~~  298 (304)
                      .+.++||+++++   +|.+.++.-.+|++|...+++.|.-
T Consensus        22 ~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~   61 (214)
T PF07795_consen   22 MEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLL   61 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567777665   4667777888888888888888873

The region in question is about 170 amino acids long.

>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]

Probab=80.28  E-value=5.6  Score=40.44  Aligned_cols=31  Identities=26%  Similarity=0.461  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          266 ALLRRREEEIDRGLKELQDEREGLEQQLQIV  296 (304)
Q Consensus       266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l  296 (304)
                      ++|.++++++++-|..|+++.++|.+.++.+
T Consensus       437 ~~l~~~q~~le~qI~~Le~kl~~l~~~l~s~  467 (489)
T KOG3684|consen  437 QELHSRQEELEKQIDTLESKLEALTASLSSL  467 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            7778888888888888888888887777644

>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.23  E-value=1.9  Score=41.22  Aligned_cols=31  Identities=32%  Similarity=0.437  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          261 LFSTQALLRRREEEIDRGLKELQDEREGLEQ  291 (304)
Q Consensus       261 l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~  291 (304)
                      +++.|+||.+++++|++-=++|++++.++.+
T Consensus        62 ~~~kq~eL~~rqeEL~Rke~ELdRREr~~a~   92 (313)
T KOG3088|consen   62 LAKKQAELLKKQEELRRKEQELDRRERALAR   92 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence            4445666666666666666666666666544

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=80.20  E-value=29  Score=33.48  Aligned_cols=64  Identities=25%  Similarity=0.312  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q 039489          234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREE-------EIDRGLKELQDEREGLEQQLQIVL  297 (304)
Q Consensus       234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~-------~l~~~I~~L~~E~~eLe~~l~~l~  297 (304)
                      +.+.+-++.+..+|+++.+..++..+.+.+++   .+|+++++       .++..+.++++|.+.|+.+++...
T Consensus        53 ~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~  126 (314)
T PF04111_consen   53 EKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYAS  126 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555554444444444443   22332222       333444444555555555554443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK05431 seryl-tRNA synthetase; Provisional

Probab=80.18  E-value=12  Score=37.60  Aligned_cols=33  Identities=27%  Similarity=0.419  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489          266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~  298 (304)
                      ++|+++..++++.|+.|+.+.++++..+..+..
T Consensus        69 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  101 (425)
T PRK05431         69 EALIAEVKELKEEIKALEAELDELEAELEELLL  101 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357777778888888888888888888876643

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=80.14  E-value=12  Score=33.38  Aligned_cols=17  Identities=35%  Similarity=0.649  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 039489          272 EEEIDRGLKELQDEREG  288 (304)
Q Consensus       272 ~~~l~~~I~~L~~E~~e  288 (304)
                      ++++++.+++|++|.++
T Consensus       155 ~~e~~~~l~~l~~ei~~  171 (176)
T PF12999_consen  155 REELEKKLEELEKEIQA  171 (176)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444444444333

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=80.09  E-value=13  Score=36.92  Aligned_cols=47  Identities=23%  Similarity=0.270  Sum_probs=31.6

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489          253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN  299 (304)
Q Consensus       253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~  299 (304)
                      +..++-+.+++.+++|.++..+++..+++.+.+.+++|.++..+..+
T Consensus       325 ki~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~~~~~  371 (373)
T COG5019         325 KIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKLKSN  371 (373)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            44555566666667777777777777777777777777777665543

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=80.04  E-value=22  Score=36.02  Aligned_cols=68  Identities=12%  Similarity=0.081  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Q 039489          231 FKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ----ALLRRREEEIDRGLKE---LQDEREGLEQQLQIVLM  298 (304)
Q Consensus       231 ~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q----~eL~~~~~~l~~~I~~---L~~E~~eLe~~l~~l~~  298 (304)
                      .....|++.++++|..+....+..++++..+.+-+    +|+.+.+.+|...+++   |++...|-|+.+++.++
T Consensus       253 ~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslemdee  327 (552)
T KOG2129|consen  253 LHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSLEMDEE  327 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            34455677778888888777777777776666544    5555555555555522   56666666666665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	304
2f0r_A	159	Crystallographic Structure Of Human Tsg101 Uev Doma		1e-22
1kpp_A	145	Structure Of The Tsg101 Uev Domain Length = 145		2e-22
1s1q_A	145	Tsg101(Uev) Domain In Complex With Ubiquitin Length		6e-21
3p9g_A	145	Crystal Structure Of The Tsg101 Uev Domain In Compl		2e-19
3obq_A	146	Crystal Structure Of The Tsg101 Uev Domain In Compl		1e-18
3r3q_A	162	Crystal Structure Of The Yeast Vps23 Uev Domain Len		1e-09
1uzx_A	169	A Complex Of The Vps23 Uev With Ubiquitin Length =		5e-09

>pdb|2F0R|A Chain A, Crystallographic Structure Of Human Tsg101 Uev Domain Length = 159

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 76/124 (61%), Gaps = 1/124 (0%)
Query: 40  LIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMES 99
           L  +  + +I+ +  L P   ++  NDG S  L+   GT+P+P++G TYNIP+ +WL+++
Sbjct: 34  LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDT 93
Query: 100 YPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSRE 159
           YP +PP  +V PT  M IK    HV  +G + +PYL  W +P S+L+ L++ +   F  E
Sbjct: 94  YPYNPPICFVKPTSSMTIKTGK-HVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDE 152
Query: 160 PPLY 163
           PP++
Sbjct: 153 PPVF 156

>pdb|1KPP|A Chain A, Structure Of The Tsg101 Uev Domain Length = 145

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 76/124 (61%), Gaps = 1/124 (0%)
Query: 40  LIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMES 99
           L  +  + +I+ +  L P   ++  NDG S  L+   GT+P+P++G TYNIP+ +WL+++
Sbjct: 20  LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDT 79
Query: 100 YPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSRE 159
           YP +PP  +V PT  M IK    HV  +G + +PYL  W +P S+L+ L++ +   F  E
Sbjct: 80  YPYNPPICFVKPTSSMTIKTGK-HVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDE 138
Query: 160 PPLY 163
           PP++
Sbjct: 139 PPVF 142

>pdb|1S1Q|A Chain A, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 145

Iteration: 1
 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 73/124 (58%), Gaps = 1/124 (0%)
Query: 40  LIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMES 99
           L  +  + +I+ +  L P   ++  NDG S  L    GT+P+P++G TYNIP+ +WL+++
Sbjct: 20  LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELXNLTGTIPVPYRGNTYNIPICLWLLDT 79
Query: 100 YPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSRE 159
           YP +PP  +V PT    IK    HV  +G + +PYL  W +P S+L+ L++     F  E
Sbjct: 80  YPYNPPICFVKPTSSXTIKTGK-HVDANGKIYLPYLHEWKHPQSDLLGLIQVXIVVFGDE 138
Query: 160 PPLY 163
           PP++
Sbjct: 139 PPVF 142

>pdb|3P9G|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex With Fa459 Peptide Length = 145

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 74/124 (59%), Gaps = 5/124 (4%)
Query: 40  LIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMES 99
           L  +  + +I+ +  L P   ++    G S  L+   GT+P+P++G TYNIP+ +WL+++
Sbjct: 24  LTVRETVNVITLYKDLKPVLDSY----GGSRELMNLTGTIPVPYRGNTYNIPICLWLLDT 79
Query: 100 YPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSRE 159
           YP +PP  +V PT  M IK    HV  +G + +PYL  W +P S+L+ L++ +   F  E
Sbjct: 80  YPYNPPICFVKPTSSMTIKTGK-HVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDE 138
Query: 160 PPLY 163
           PP++
Sbjct: 139 PPVF 142

>pdb|3OBQ|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex With A Human Hrs Psap Peptide Length = 146

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 69  SVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSG 128
           S  L+   GT+P+P++G TYNIP+ +WL+++YP +PP  +V PT  M IK    HV  +G
Sbjct: 50  SRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGK-HVDANG 108
Query: 129 LVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLY 163
            + +PYL  W +P S+L+ L++ +   F  EPP++
Sbjct: 109 KIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVF 143

>pdb|3R3Q|A Chain A, Crystal Structure Of The Yeast Vps23 Uev Domain Length = 162

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 7/122 (5%)
Query: 46  LTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVT-YNIPVIIWLMESYPRHP 104
           L L+  F SL P+T  FTH+DG    LL   GT+     G + ++IPVI+W+   YP  P
Sbjct: 38  LALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKP 97
Query: 105 PCVYVN-PTRDM-IIKRPHP---HVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSRE 159
           P + +N    DM  I    P   ++  +G +++P L  W   + NL+ +V+EL +    E
Sbjct: 98  PFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHAWDPAAMNLIMVVQELMSLL-HE 156
Query: 160 PP 161
           PP
Sbjct: 157 PP 158

>pdb|1UZX|A Chain A, A Complex Of The Vps23 Uev With Ubiquitin Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 13/125 (10%)
Query: 46  LTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVT-YNIPVIIWLMESYPRHP 104
           L L+  F SL P+T  FTH+DG    LL   GT+     G + ++IPVI W+   YP  P
Sbjct: 44  LALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIXWVPSXYPVKP 103
Query: 105 PCVYVN--------PTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACF 156
           P + +N         +  + I+    ++  +G +++P L  W   + NL+ +V+EL +  
Sbjct: 104 PFISINLENFDXNTISSSLPIQE---YIDSNGWIALPILHCWDPAAXNLIXVVQELXSLL 160
Query: 157 SREPP 161
             EPP
Sbjct: 161 -HEPP 164

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	304
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	1e-49
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	8e-47

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A Length = 146

 Score =  161 bits (408), Expect = 1e-49
 Identities = 45/147 (30%), Positives = 81/147 (55%), Gaps = 4/147 (2%)

Query: 19  LSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGT 78
           + S +S+     +      + L  +  + +I+ +  L P   ++         L+   GT
Sbjct: 3   MGSAVSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYGTGSR---ELMNLTGT 59

Query: 79  VPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNW 138
           +P+P++G TYNIP+ +WL+++YP +PP  +V PT  M IK    HV  +G + +PYL  W
Sbjct: 60  IPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIK-TGKHVDANGKIYLPYLHEW 118

Query: 139 IYPSSNLVDLVRELSACFSREPPLYSQ 165
            +P S+L+ L++ +   F  EPP++S+
Sbjct: 119 KHPQSDLLGLIQVMIVVFGDEPPVFSR 145

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} PDB: 3r42_A 1uzx_A* Length = 162

 Score =  154 bits (390), Expect = 8e-47
 Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 23/164 (14%)

Query: 21  SVLSQRGPSALPYAEDTKWL-------------IRQHLLTLISTFPSLDPKTATFTHNDG 67
             +S  G  ++P A    WL                  L L+  F SL P+T  FTH+DG
Sbjct: 1   GAMSANGKISVPEAV-VNWLFKVIQPIYNDGRTTFHDSLALLDNFHSLRPRTRVFTHSDG 59

Query: 68  RSVNLLQADGTVPMPFQGVT-YNIPVIIWLMESYPRHPPCVYVN------PTRDMIIKRP 120
               LL   GT+     G + ++IPVI+W+   YP  PP + +N       T    +   
Sbjct: 60  TPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSL-PI 118

Query: 121 HPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYS 164
             ++  +G +++P L  W   + NL+ +V+EL +    EPP   
Sbjct: 119 QEYIDSNGWIALPILHAWDPAAMNLIMVVQELMSLLH-EPPQDQ 161

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	304
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	100.0
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	100.0
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	99.48
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	99.17
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	98.99
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	98.97
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	98.88
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	98.87
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	98.86
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	98.83
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	98.82
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	98.82
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	98.81
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	98.81
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	98.77
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	98.77
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	98.76
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	98.76
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	98.76
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	98.75
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	98.74
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	98.73
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	98.71
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	98.71
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	98.71
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	98.7
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	98.7
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	98.69
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	98.69
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	98.67
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	98.64
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	98.64
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	98.63
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	98.62
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	98.61
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	98.6
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	98.59
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	98.59
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	98.58
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	98.58
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	98.57
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	98.55
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	98.55
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	98.54
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	98.54
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	98.54
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	98.53
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	98.51
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	98.51
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	98.5
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	98.48
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	98.44
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	98.38
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	98.37
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	98.35
2p22_A	174	Suppressor protein STP22 of temperature- sensitive	97.72
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	97.59
2p22_A	174	Suppressor protein STP22 of temperature- sensitive	97.24
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	96.16
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	95.82
3trt_A	77	Vimentin; cytoskeleton, intermediate filament, alp	95.7
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	92.77
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	92.57
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	92.44
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	92.17
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	91.86
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	91.55
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.49
3he5_B	52	Synzip2; heterodimeric coiled-coil, de novo protei	90.18
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	89.74
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	89.46
2pnv_A	43	Small conductance calcium-activated potassium chan	89.35
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	89.08
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	88.37
2q6q_A	74	Spindle POLE BODY component SPC42; SPC42P, budding	88.34
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	88.04
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	88.03
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	87.65
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	87.42
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	87.33
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	86.88
4dnd_A	130	Syntaxin-10, SYN10; structural genomics, protein s	86.87
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	86.75
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	86.63
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	86.54
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	86.36
3m0d_C	65	TNF receptor-associated factor 1; trimeric helix c	85.99
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	85.62
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	85.58
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	85.52
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	85.23
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	85.08
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	84.79
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	84.15
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	84.06
3u06_A	412	Protein claret segregational; motor domain, stalk	83.4
1t3j_A	96	Mitofusin 1; coiled coil antiparallel, dimer, memb	83.36
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	83.35
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	83.23
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	83.23
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	83.13
3swf_A	74	CGMP-gated cation channel alpha-1; coiled-coil, as	82.45
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	82.12
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	81.82
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	81.77
3ni0_A	99	Bone marrow stromal antigen 2; coiled-coil, antivi	81.44
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	81.29
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	81.03
2ke4_A	98	CDC42-interacting protein 4; CIP4, TC10, coiled-co	80.81
2xzr_A	114	Immunoglobulin-binding protein EIBD; cell adhesion	80.73
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	80.59
2dq0_A	455	Seryl-tRNA synthetase; coiled-coil, homodimer, str	80.41
2wt7_B	90	Transcription factor MAFB; transcription, transcri	80.03

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=100.00  E-value=3.9e-46  Score=318.11  Aligned_cols=139  Identities=33%  Similarity=0.732  Sum_probs=131.5

Q ss_pred             HHHHHHHHhcCCCCCCCCCCchhhHHHHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEE
Q 039489           15 IQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVII   94 (304)
Q Consensus        15 ~~~wL~~vl~~~~~~a~~Y~~~~k~~v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~I   94 (304)
                      ..+||.++|+       +|.+...  +.+|+.++|++||+|+|++++|+   |++++||||+|||||.|+|.+|||||+|
T Consensus         8 ~~~~l~~~l~-------~Y~~~d~--t~~dv~~vl~~yp~L~p~~~~y~---G~~~~LL~l~GtIpv~y~g~~y~iPi~I   75 (146)
T 3obq_A            8 SESQLKKMVS-------KYKYRDL--TVRETVNVITLYKDLKPVLDSYG---TGSRELMNLTGTIPVPYRGNTYNIPICL   75 (146)
T ss_dssp             CHHHHHHHTT-------TCSSHHH--HHHHHHHHHHHCTTEEEEEEESS---STTCEEEEEEEEEEEECSSCEEEEEEEE
T ss_pred             CHHHHHHHHh-------cCCCcch--hHHHHHHHHHhCCCCceEeeeee---CChheEEEEEEEeeeeecCccccceEEE
Confidence            4689999998       4876443  67999999999999999999998   9999999999999999999999999999


Q ss_pred             eecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccccccCCCCCHHHHHHHHHHHhccCCCCCCCC
Q 039489           95 WLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYSQR  166 (304)
Q Consensus        95 wlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~~W~~~~s~L~~Lv~~l~~~F~~~pPl~~~~  166 (304)
                      |||++||++||+|||+||.+|.|+ .|+|||++|+||+|||++|++++|||++||++|+++|+++||||+||
T Consensus        76 wlp~~YP~~pP~vfv~pt~~m~I~-~~~~Vd~~G~i~lpyL~~W~~~~snL~~ll~~l~~~F~~epPv~sk~  146 (146)
T 3obq_A           76 WLLDTYPYNPPICFVKPTSSMTIK-TGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFSRP  146 (146)
T ss_dssp             ECCTTTTTSCCEEEECCCTTEEEC-CBTTBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHHHSCSEEECC
T ss_pred             EeCccCCCCCCEEEEeCCCCCEEC-CCCCCCCCCCEecccccccCCCCCCHHHHHHHHHHHHhhCCCCccCC
Confidence            999999999999999999999995 59999999999999999999999999999999999999999999985

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=100.00  E-value=6.5e-44  Score=309.17  Aligned_cols=145  Identities=30%  Similarity=0.530  Sum_probs=132.5

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCchhhHHHHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcc-
Q 039489            9 PPNPQQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVT-   87 (304)
Q Consensus         9 ~~~~~~~~~wL~~vl~~~~~~a~~Y~~~~k~~v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~-   87 (304)
                      +++||+|++||++||++      .|.+. + .+++|+.++|++||+|+|++++|||+||++++||||+|||||.|+|.+ 
T Consensus         9 ~~~p~~v~~wl~~vl~p------~Y~~~-~-~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~   80 (162)
T 3r3q_A            9 ISVPEAVVNWLFKVIQP------IYNDG-R-TTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSP   80 (162)
T ss_dssp             -CCCHHHHHHHHHHHTT------TCTTH-H-HHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSC
T ss_pred             cCCCHHHHHHHHHhcCc------cccCh-h-HHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCccc
Confidence            37999999999999997      47653 3 366999999999999999999999999999999999999999999998 


Q ss_pred             cceeEEEeecccCCCCCCeEEEec-CCCceec----CCCCcccCCCceeccccccccCCCCCHHHHHHHHHHHhccCCC
Q 039489           88 YNIPVIIWLMESYPRHPPCVYVNP-TRDMIIK----RPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPP  161 (304)
Q Consensus        88 ynIPi~Iwlp~~YP~~pPivyV~p-t~~m~I~----~~~~~Vd~~G~v~lpyL~~W~~~~s~L~~Lv~~l~~~F~~~pP  161 (304)
                      |||||+||||++||++||+|||+| |.+|.++    ..|+|||++|+||+|||++|++++|+|.+||++|+.+|++-.|
T Consensus        81 Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~lpyL~~W~p~~s~L~~ll~~l~~lf~ep~~  159 (162)
T 3r3q_A           81 HSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHAWDPAAMNLIMVVQELMSLLHEPPQ  159 (162)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCTTSBBCCGGGGSCCGGGCCHHHHHHHHHHTTSCCCC
T ss_pred             ccccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCCCCcEeCcccccCCCCcCcHHHHHHHHHHHhcCCCC
Confidence            999999999999999999999998 8888632    3499999999999999999998889999999999999997654

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=99.48  E-value=1.7e-13  Score=104.37  Aligned_cols=68  Identities=9%  Similarity=0.246  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489          234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD  301 (304)
Q Consensus       234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~  301 (304)
                      |+++||+|||++++++.+.+.++|+++|.+|++||++|+.+|++||++|++|+++|+++|+.|..+..
T Consensus         3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~   70 (78)
T 3iv1_A            3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDE   70 (78)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999977643

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=99.17  E-value=6.6e-11  Score=90.10  Aligned_cols=71  Identities=15%  Similarity=0.231  Sum_probs=67.5

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          224 TEDQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQ  294 (304)
Q Consensus       224 ~~~a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~  294 (304)
                      ..+|+||++|+++.+.+++.++||++|++|.+++.+|..+++   ++|++++++|+++|+.|+++.+||++.++
T Consensus         4 llSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l~   77 (78)
T 3iv1_A            4 LISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSALE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            457999999999999999999999999999999999999999   99999999999999999999999998653

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=98.99  E-value=3.9e-09  Score=90.22  Aligned_cols=107  Identities=22%  Similarity=0.404  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEeccc----ccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI  116 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIP----i~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~  116 (304)
                      +.+++..+.+.-+ ...........|| ..+|+...|+|.    -.|.|..|.+  .|++|++||+.||.|++. |.   
T Consensus         9 L~kE~~~l~~~~~-~g~~~~p~~~~~~-~~nl~~w~~~I~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~---   80 (157)
T 2gjd_A            9 LQEERKKWRKDHP-FGFYAKPVKKADG-SMDLQKWEAGIPGKEGTNWAGGVYPI--TVEYPNEYPSKPPKVKFP-AG---   80 (157)
T ss_dssp             HHHHHHHHHHCCC-TTCEEEEEECTTS-CEEEEEEEEEEECCTTSTTTTBEEEE--EEECCTTTTTSCCEEECC-TT---
T ss_pred             HHHHHHHHHhCCC-CCEEEEeccccCC-CCcccEEEEEEECCCCCCcCCeEEEE--EEEcCCCCCCCCCeeecc-CC---
Confidence            4477777755422 2222222222344 247777777774    3688887775  999999999999999996 42   


Q ss_pred             ecCCCCcccCCCceecccccc---ccCCCCCHHHHHHHHHHHhcc
Q 039489          117 IKRPHPHVTPSGLVSIPYLQN---WIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       117 I~~~~~~Vd~~G~v~lpyL~~---W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                        .-|++||.+|+||+.+|+.   |++ ..+|..++..|..+|.+
T Consensus        81 --i~HPnv~~~G~iCl~iL~~~~~W~p-~~~i~~vl~~i~~ll~~  122 (157)
T 2gjd_A           81 --FYHPNVYPSGTICLSILNEDQDWRP-AITLKQIVLGVQDLLDS  122 (157)
T ss_dssp             --CCCTTBCTTSBBCCGGGCTTTTCCT-TCCHHHHHHHHHHHHTS
T ss_pred             --CccCCCCCCCcEeeecccCCCCCCC-CCcHHHHHHHHHHHHhC
Confidence              3499999999999999996   996 78999999999999954

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=98.97  E-value=5.7e-09  Score=89.55  Aligned_cols=107  Identities=21%  Similarity=0.445  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEeccc----ccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI  116 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIP----i~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~  116 (304)
                      +.+|+..+.+.-+ ...........|| ..+|+...|+|.    -.|.|..|.+  .|++|++||+.||.|++. |+   
T Consensus        12 L~kE~~~l~~~~~-~g~~~~p~~~~~~-~~nl~~w~~~i~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~---   83 (161)
T 2grr_A           12 LAQERKAWRKDHP-FGFVAVPTKNPDG-TMNLMNWECAIPGKKGTPWEGGLFKL--RMLFKDDYPSSPPKCKFE-PP---   83 (161)
T ss_dssp             HHHHHHHHHHSCC-TTCEEEEEECTTS-CEEEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC---
T ss_pred             HHHHHHHHHhCCC-CCEEEEeccccCC-CCCccEEEEEEECCCCCCccCCEEEE--EEEcCcccCCCCCEEEEe-cC---
Confidence            4477777765432 1112222222233 257888888874    3688888876  999999999999999996 43   


Q ss_pred             ecCCCCcccCCCceecccccc---ccCCCCCHHHHHHHHHHHhcc
Q 039489          117 IKRPHPHVTPSGLVSIPYLQN---WIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       117 I~~~~~~Vd~~G~v~lpyL~~---W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                        .-|++||.+|+||+.+|+.   |++ ..+|..++..|..+|.+
T Consensus        84 --i~HPnv~~~G~iCl~iL~~~~~W~p-~~~i~~vl~~i~~ll~~  125 (161)
T 2grr_A           84 --LFHPNVYPSGTVCLSILEEDKDWRP-AITIKQILLGIQELLNE  125 (161)
T ss_dssp             --CCSTTBCTTSBBCCGGGCTTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             --cccCCCCCCCeEeehhcCCCCCcCC-CCcHHHHHHHHHHHHhC
Confidence              3499999999999999985   996 78999999999999874

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=98.88  E-value=2e-08  Score=85.27  Aligned_cols=102  Identities=19%  Similarity=0.394  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEeccc----ccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI  116 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIP----i~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~  116 (304)
                      +.+|+..+.+.-+. ...  ..  .++  .+|+...|+|.    -.|.|..|.+  .|++|++||+.||.|++. |+   
T Consensus         9 L~~E~~~l~~~~~~-~i~--~~--~~~--~~l~~w~~~i~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~---   75 (152)
T 2aak_A            9 LMRDFKRLQQDPPA-GIS--GA--PQD--NNIMLWNAVIFGPDDTPWDGGTFKL--SLQFSEDYPNKPPTVRFV-SR---   75 (152)
T ss_dssp             HHHHHHHHHHSCCT-TEE--EE--EET--TEEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC---
T ss_pred             HHHHHHHHHhCCCC-CEE--EE--eCC--CCccEEEEEEeCCCCCCccCCEEEE--EEECCCCCCCCCCEEEEe-cC---
Confidence            44777777654321 111  11  111  25666666663    4688888776  999999999999999996 43   


Q ss_pred             ecCCCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489          117 IKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       117 I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                        .-|++||.+|+||+.+|. +|++ ..+|..++..|..+|.+
T Consensus        76 --i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~  115 (152)
T 2aak_A           76 --MFHPNIYADGSICLDILQNQWSP-IYDVAAILTSIQSLLCD  115 (152)
T ss_dssp             --CCCTTBCTTSBBCCGGGTTSCCT-TCCHHHHHHHHHHHHTS
T ss_pred             --cccCCCCCCCEEechhhcCCCCC-CCcHHHHHHHHHHHHhC
Confidence              349999999999999998 6997 78999999999999864

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=98.87  E-value=1.9e-08  Score=84.21  Aligned_cols=108  Identities=17%  Similarity=0.353  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHhCC-CCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecC
Q 039489           41 IRQHLLTLISTFP-SLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR  119 (304)
Q Consensus        41 v~~dv~~vl~~yp-~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~  119 (304)
                      +.+|+..+.+.-+ ++....  ...+|.-..--..|.|.---.|+|..|.+  .|.+|++||+.||.|.+. |+   |-+
T Consensus        27 L~kEl~~l~~~~~~gi~v~~--~~~~~nl~~W~~~I~GP~~TpYegG~f~l--~i~fp~~YP~~PP~v~F~-T~---i~~   98 (136)
T 2a7l_A           27 LQKELLALQNDPPPGMTLNE--KSVQNSITQWIVDMEGAPGTLYEGEKFQL--LFKFSSRYPFDSPQVMFT-GE---NIP   98 (136)
T ss_dssp             HHHHHHHHHHSCCTTCCCCT--TCCCCSCEEEEEEEECCTTSTTTTCEEEE--EEEECTTTTTSCCEEEEE-SS---CCC
T ss_pred             HHHHHHHHHhCCCCCEEEEE--eeCccccceeEEEEECCCCCccccEEEEE--EEECCCCCCCCCCEEEEe-CC---CcC
Confidence            4488888765422 222110  01112111222334444345788888877  889999999999999886 43   213


Q ss_pred             CCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhc
Q 039489          120 PHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFS  157 (304)
Q Consensus       120 ~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~  157 (304)
                      -|++||.+|+||+..|. +|++ ..+|..++..++..++
T Consensus        99 ~HPNV~~~G~ICL~iL~~~WsP-~~ti~~vL~sI~slL~  136 (136)
T 2a7l_A           99 VHPHVYSNGHICLSILTEDWSP-ALSVQSVCLSIISMLS  136 (136)
T ss_dssp             CBTTBCTTCBBCCGGGTTTCCT-TSCHHHHHHHHHHHTC
T ss_pred             CCccCCCCCeEEchhcCCCCCC-CCcHHHHHHHHHHHhC
Confidence            49999999999999995 8997 7789999999888763

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=98.86  E-value=2.1e-08  Score=84.89  Aligned_cols=102  Identities=23%  Similarity=0.402  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI  116 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~  116 (304)
                      +.+|+..+.+.-+ -....  .  .++  .+|+...++|    --.|.|..|.+  .|.+|++||+.||.|.+. |+   
T Consensus         9 L~kEl~~l~~~~~-~~~~~--~--~~~--~~l~~w~~~i~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~---   75 (150)
T 1z2u_A            9 IQKELQDLGRDPP-AQCSA--G--PVG--DDLFHWQATIMGPPESPYQGGVFFL--TIHFPTDYPFKPPKVAFT-TR---   75 (150)
T ss_dssp             HHHHHHHHHHSCC-SSEEE--E--EET--TEEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC---
T ss_pred             HHHHHHHHHhCCC-CCEEE--E--ECC--CcceEEEEEEECCCCCCcCCCEEEE--EEECCCCCCCCCcEEEEe-cC---
Confidence            4477877755422 11111  1  122  2455555555    46799988887  899999999999999985 43   


Q ss_pred             ecCCCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489          117 IKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       117 I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                        .-|++||.+|+||+.+|. +|++ ..+|..++..|..+|.+
T Consensus        76 --i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~  115 (150)
T 1z2u_A           76 --IYHPNINSNGSICLDILRSQWSP-ALTISKVLLSICSLLCD  115 (150)
T ss_dssp             --CCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             --cccCcCCCCCeEeeccccCCCCC-CCCHHHHHHHHHHHhhC
Confidence              249999999999999998 8997 78999999999999874

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=98.83  E-value=2.8e-08  Score=85.71  Aligned_cols=77  Identities=22%  Similarity=0.452  Sum_probs=65.8

Q ss_pred             EEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCHHHHHHH
Q 039489           73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRE  151 (304)
Q Consensus        73 L~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~  151 (304)
                      ..|.|.---.|.|..|.+  .|.+|++||+.||.|.+. |+     .-|++||.+|+||+..|. +|++ ..+|..++..
T Consensus        53 ~~I~GP~~TpYegg~f~l--~i~fp~~YP~~PP~v~F~-T~-----i~HPnV~~~G~ICl~iL~~~W~P-~~ti~~vL~s  123 (165)
T 2c4o_A           53 ATIMGPNDSPYQGGVFFL--TIHFPTDYPFKPPKVAFT-TR-----IYHPNINSNGSICLDILRSQWSP-ALTISKVLLS  123 (165)
T ss_dssp             EEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEEC-SC-----CCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHH
T ss_pred             EEEECCCCCCccCceEEE--EEECCCcCCCCCCEEEEe-cC-----CcCCcCCCCCeEeehhhcCCCCC-cCcHHHHHHH
Confidence            455665557799998887  899999999999999986 43     249999999999999998 8997 7899999999


Q ss_pred             HHHHhcc
Q 039489          152 LSACFSR  158 (304)
Q Consensus       152 l~~~F~~  158 (304)
                      |..+|.+
T Consensus       124 i~~ll~~  130 (165)
T 2c4o_A          124 ICSLLCD  130 (165)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHhC
Confidence            9999874

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=98.82  E-value=4.2e-08  Score=80.75  Aligned_cols=107  Identities=21%  Similarity=0.358  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP  120 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~  120 (304)
                      +.+|+..+.+.-+ -....  ...+|.-..--..+.|.---.|+|..|.+  .|.+|++||+.||.|.+. |.  +  .-
T Consensus        11 L~kEl~~l~~~~~-~~~~~--~~~~~~l~~w~~~i~GP~~tpYegg~f~~--~i~fp~~YP~~PP~v~f~-t~--i--~~   80 (125)
T 2fo3_A           11 IQKELHNFLNNPP-INCTL--DVHPNNIRIWIVKYVGLENTIYANEVYKL--KIIFPDDYPLKPPIVYFL-QK--P--PK   80 (125)
T ss_dssp             HHHHHHHHHHSCC-TTEEE--EECTTCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEEC-SS--C--CC
T ss_pred             HHHHHHHHHhCCC-CCEEE--EeCcchhhhhheEEeCCCCCCcCCCEEEE--EEEcCCCCCCCCCEEEEe-CC--C--CC
Confidence            4578888755422 11111  11222222223445665556799988877  889999999999999885 43  1  24


Q ss_pred             CCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489          121 HPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       121 ~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      |++||.+|+||+..|. +|++ ..+|..++..++..|..
T Consensus        81 HPnv~~~G~iCl~iL~~~W~P-~~~i~~vl~si~~ll~~  118 (125)
T 2fo3_A           81 HTHVYSNGDICLSLLGDDYNP-SLSISGLVLSIISMLSS  118 (125)
T ss_dssp             BTTBCTTSBBCCGGGTTTCCT-TCCHHHHHHHHHHHHC-
T ss_pred             CCcCCCCCEEEchhcCCCCCC-CCcHHHHHHHHHHHHhC
Confidence            9999999999999995 8997 78999999999998864

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=98.82  E-value=3.4e-08  Score=84.14  Aligned_cols=102  Identities=21%  Similarity=0.355  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEeccc----ccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI  116 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIP----i~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~  116 (304)
                      +.+|+..+.+. +.-...    ...++  .+|+...|+|.    -.|.|..|.+  .|.+|++||+.||.|.+. |+   
T Consensus        10 L~kE~~~l~~~-~~~~i~----~~~~~--~~l~~w~~~I~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~---   76 (155)
T 1jat_A           10 IIKETEKLVSD-PVPGIT----AEPHD--DNLRYFQVTIEGPEQSPYEDGIFEL--ELYLPDDYPMEAPKVRFL-TK---   76 (155)
T ss_dssp             HHHHHHHHHHS-CCTTEE----EEEET--TEEEEEEEEEECCTTSTTTTEEEEE--EEECCTTTTTSCCEEEEC-SC---
T ss_pred             HHHHHHHHHhC-CCCCEE----EEECC--CchhEEEEEEECCCCCCccCcEEEE--EEEcCCCCCCCCCcceee-cc---
Confidence            45788887654 211111    11122  26777777773    4688888776  899999999999999885 43   


Q ss_pred             ecCCCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489          117 IKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       117 I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                        .-|++||.+|+||+.+|. +|++ ..+|..++..|..+|..
T Consensus        77 --i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~  116 (155)
T 1jat_A           77 --IYHPNIDRLGRICLDVLKTNWSP-ALQIRTVLLSIQALLAS  116 (155)
T ss_dssp             --CCBTTBCTTCCBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             --cccCCCCCCCEEEchhhccCCCC-CCCHHHHHHHHHHHHhC
Confidence              249999999999999997 8997 88999999999999875

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=98.81  E-value=4.8e-08  Score=83.25  Aligned_cols=106  Identities=24%  Similarity=0.394  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP  120 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~  120 (304)
                      +.+|+..+.+.-+ ..  ...+-.+|.-..--..|.|.---.|.|..|.+  .|.+|++||+.||.|.+. |+     .-
T Consensus        14 L~kEl~~l~~~~~-~~--i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~   82 (156)
T 2e2c_A           14 LQQELRTLLMSGD-PG--ITAFPDGDNLFKWVATLDGPKDTVYESLKYKL--TLEFPSDYPYKPPVVKFT-TP-----CW   82 (156)
T ss_dssp             HHHHHHHHHHHCC-TT--EEEEESSSCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC-----CC
T ss_pred             HHHHHHHHHhCCC-CC--EEEEECCCCccEEEEEEECCCCCCcCCcEEEE--EEECCCCCCCCCCEEEEe-CC-----cc
Confidence            4477877765422 11  11122222211222334554345689988877  999999999999999996 43     24


Q ss_pred             CCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489          121 HPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       121 ~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      |++||.+|+||+.+|. +|++ ..+|..++..|..+|.+
T Consensus        83 HPnv~~~G~iCl~iL~~~W~p-~~~i~~vL~si~~ll~~  120 (156)
T 2e2c_A           83 HPNVDQSGNICLDILKENWTA-SYDVRTILLSLQSLLGE  120 (156)
T ss_dssp             BTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHTTS
T ss_pred             cCCCccCceEECccccccCCC-CCcHHHHHHHHHHHHhC
Confidence            9999999999999998 6987 78999999999998864

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=98.81  E-value=3.9e-08  Score=83.75  Aligned_cols=106  Identities=23%  Similarity=0.359  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP  120 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~  120 (304)
                      +.+|+..+.+. +.-....  .-.+|.-..--..|.|.---.|.|..|.+  .|.+|++||+.||.|.+. |+     .-
T Consensus        10 L~kEl~~l~~~-~~~~i~~--~~~~~~l~~w~~~i~GP~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~   78 (154)
T 2c2v_B           10 IIKETQRLLAE-PVPGIKA--EPDESNARYFHVVIAGPQDSPFEGGTFKL--ELFLPEEYPMAAPKVRFM-TK-----IY   78 (154)
T ss_dssp             HHHHHHHHHHS-CCTTEEE--EECSSCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEEC-SC-----CC
T ss_pred             HHHHHHHHHhC-CCCCEEE--EECCCchheEEEEEECCCCCCcCCCeEEE--EEEcCCCCCCCCCEEEee-cC-----cc
Confidence            45788887654 2222211  22223222222344454345789988887  899999999999999986 43     24


Q ss_pred             CCcccCCCceecccc-ccccCCCCCHHHHHHHHHHHhcc
Q 039489          121 HPHVTPSGLVSIPYL-QNWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       121 ~~~Vd~~G~v~lpyL-~~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      |++||.+|+||+..| ++|++ ..+|..++..|..+|.+
T Consensus        79 HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~  116 (154)
T 2c2v_B           79 HPNVDKLGRICLDILKDKWSP-ALQIRTVLLSIQALLSA  116 (154)
T ss_dssp             CTTBCTTCBBCCHHHHTSCCT-TCCHHHHHHHHHHHTTS
T ss_pred             cCcCccCCeEEchhccCCCCC-CCcHHHHHHHHHHHHhC
Confidence            999999999999999 58997 88999999999998864

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=98.77  E-value=7.3e-08  Score=80.52  Aligned_cols=107  Identities=21%  Similarity=0.353  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP  120 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~  120 (304)
                      +.+|+..+.+.-+ -....  ...+|.-..--..+.|.---.|.|..|.+  .|.+|++||+.||.|.+. |+   | .-
T Consensus        25 L~kEl~~l~~~~~-~~~~~--~~~~~nl~~W~~~I~GP~~tpYegg~f~~--~i~fp~~YP~~PP~v~f~-t~---i-~~   94 (136)
T 2h2y_A           25 IQKELNNFLKNPP-INCTI--DVHPSNIRIWIVQYVGLENTIYANEVYKI--KIIFPDNYPLKPPIVYFL-QK---P-PK   94 (136)
T ss_dssp             HHHHHHHHHHSCC-TTEEE--EECTTCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEEC-SS---C-CC
T ss_pred             HHHHHHHHHhCCC-CCeEE--EeccccccccEEEEECCCCCceeCCEEEE--EEEeCCCCCCCCCEEEEe-CC---C-CC
Confidence            4578887755422 11111  11222222222445665556799988887  899999999999999885 43   1 24


Q ss_pred             CCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489          121 HPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       121 ~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      |++|+.+|+||+..|. +|++ ..+|..++..++..|..
T Consensus        95 HPnv~~~G~ICl~iL~~~WsP-~~ti~~vL~si~sll~~  132 (136)
T 2h2y_A           95 HTHVYSNGDICLSVLGDDYNP-SLSISGLILSIISMLSS  132 (136)
T ss_dssp             CTTBCTTCCBCCGGGTTTCCT-TCCHHHHHHHHHHHHSS
T ss_pred             CCcCCCCCEEECccccCCCCC-CCcHHHHHHHHHHHHhC
Confidence            9999999999999997 8987 78999999999998864

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=98.77  E-value=4.9e-08  Score=83.46  Aligned_cols=77  Identities=19%  Similarity=0.455  Sum_probs=64.7

Q ss_pred             EEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCHHHHHHH
Q 039489           73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRE  151 (304)
Q Consensus        73 L~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~  151 (304)
                      ..|.|.---.|+|..|.+  .|.+|++||+.||.|.+. |+     .-|++||.+|+||+..|. +|.+ ..+|..++..
T Consensus        47 ~~i~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vL~~  117 (158)
T 1zdn_A           47 VTIEGPEGTPYAGGLFRM--KLLLGKDFPASPPKGYFL-TK-----IFHPNVGANGEICVNVLKRDWTA-ELGIRHVLLT  117 (158)
T ss_dssp             EEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC-----CCCTTBCTTSBBCHHHHTTTCCT-TCCHHHHHHH
T ss_pred             EEEECCCCCCccCcEEEE--EEEcCCCCCCCCCEEEec-cC-----cccCCCCCCCEEehhhcCCCCCC-CCcHHHHHHH
Confidence            345554445799988887  899999999999999996 43     249999999999999997 8997 7899999999


Q ss_pred             HHHHhcc
Q 039489          152 LSACFSR  158 (304)
Q Consensus       152 l~~~F~~  158 (304)
                      |..+|..
T Consensus       118 i~~ll~~  124 (158)
T 1zdn_A          118 IKCLLIH  124 (158)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHhC
Confidence            9998864

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=98.76  E-value=7.2e-08  Score=83.46  Aligned_cols=79  Identities=22%  Similarity=0.510  Sum_probs=66.1

Q ss_pred             eEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCH
Q 039489           71 NLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNL  145 (304)
Q Consensus        71 ~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L  145 (304)
                      +|+...|+|    --.|.|..|.+  .|.||.+||+.||.|.+. |+     .-|++|+.+|+||+.+|. +|++ ..+|
T Consensus        32 nl~~W~~~I~GP~~tpYegG~f~l--~i~fp~~YP~~PP~v~F~-t~-----i~HPNI~~~G~ICl~iL~~~WsP-~~~i  102 (169)
T 1ayz_A           32 NVMVWNAMIIGPADTPYEDGTFRL--LLEFDEEYPNKPPHVKFL-SE-----MFHPNVYANGEICLDILQNRWTP-TYDV  102 (169)
T ss_dssp             EEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC-----CCCTTBCTTSBBCCGGGTTTCCT-TCCH
T ss_pred             ccccceEEEECCCCCCcCCCEEEE--EEECcccCCCCCCccccc-cC-----CccCCCCCCCeEeehhhccCCCC-cCcH
Confidence            566655555    35688988887  899999999999999996 43     249999999999999998 6997 7899


Q ss_pred             HHHHHHHHHHhcc
Q 039489          146 VDLVRELSACFSR  158 (304)
Q Consensus       146 ~~Lv~~l~~~F~~  158 (304)
                      ..++..|+.+|..
T Consensus       103 ~~vL~si~~ll~~  115 (169)
T 1ayz_A          103 ASILTSIQSLFND  115 (169)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999998863

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=98.76  E-value=3.2e-08  Score=84.65  Aligned_cols=76  Identities=26%  Similarity=0.522  Sum_probs=63.3

Q ss_pred             EEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccC-CCceeccccc-cccCCCCCHHHHHHH
Q 039489           74 QADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTP-SGLVSIPYLQ-NWIYPSSNLVDLVRE  151 (304)
Q Consensus        74 ~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~-~G~v~lpyL~-~W~~~~s~L~~Lv~~  151 (304)
                      .|.|.---.|.|..|.+  .|.+|++||+.||.|.+. |+     .-|++||. +|+||+.+|. +|++ ..+|..++..
T Consensus        46 ~i~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~HPni~~~~G~iCl~iL~~~W~p-~~~i~~vl~~  116 (159)
T 2bep_A           46 EIAGPPDTPYEGGRYQL--EIKIPETYPFNPPKVRFI-TK-----IWHPNISSVTGAICLDILKDQWAA-AMTLRTVLLS  116 (159)
T ss_dssp             EEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC-----CCBTTBCTTTCBBCCGGGTTTCCT-TCCHHHHHHH
T ss_pred             EEECCCCCCccCCEEEE--EEeCCCcCCCCCCEEEee-CC-----CCccCCCCCCCEEeChhhhccCCC-CCcHHHHHHH
Confidence            44454445799988876  999999999999999996 43     24999994 9999999998 5997 8899999999


Q ss_pred             HHHHhcc
Q 039489          152 LSACFSR  158 (304)
Q Consensus       152 l~~~F~~  158 (304)
                      |..+|..
T Consensus       117 i~~ll~~  123 (159)
T 2bep_A          117 LQALLAA  123 (159)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHhC
Confidence            9999874

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=98.76  E-value=6.8e-08  Score=81.74  Aligned_cols=79  Identities=25%  Similarity=0.478  Sum_probs=66.0

Q ss_pred             eEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCH
Q 039489           71 NLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNL  145 (304)
Q Consensus        71 ~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L  145 (304)
                      +|+...++|    --.|.|..|.+  .|.+|++||+.||.|.+. |+     .-|++||.+|+||+..|. +|++ ..+|
T Consensus        29 ~l~~w~~~i~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~HPnv~~~G~iCl~iL~~~W~p-~~~i   99 (149)
T 2r0j_A           29 NYRHFNILINGPDGTPYEGGTYKL--ELFLPEQYPMEPPKVRFL-TK-----IYHPNIDKLGRICLDILKDKWSP-ALQI   99 (149)
T ss_dssp             EEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEEC-SC-----CCBTTBCTTCBBCCGGGTTTCCT-TSCH
T ss_pred             cccEEEEEEECCCCCCcCCCEEEE--EEeCCcccCCCCCeeEec-cC-----CccCCCCCCCEEechhcCCCCCC-CCcH
Confidence            566555555    35688888877  899999999999999986 43     249999999999999998 8997 7899


Q ss_pred             HHHHHHHHHHhcc
Q 039489          146 VDLVRELSACFSR  158 (304)
Q Consensus       146 ~~Lv~~l~~~F~~  158 (304)
                      ..++..|..+|.+
T Consensus       100 ~~vl~~i~~ll~~  112 (149)
T 2r0j_A          100 RTVLLSIQALLSS  112 (149)
T ss_dssp             HHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999998864

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=98.75  E-value=8.7e-08  Score=82.71  Aligned_cols=106  Identities=20%  Similarity=0.332  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP  120 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~  120 (304)
                      +.+|+..+.+. +.-....  .-.+|.-..--..|.|.---.|.|..|.+  .|.+|++||+.||.|.+. |+     .-
T Consensus        26 L~kEl~~l~~~-~~~gi~~--~~~~~nl~~W~~~I~GP~~TpYegG~f~l--~i~fp~~YP~~PP~V~F~-T~-----i~   94 (166)
T 2ayv_A           26 INKELNDLSKD-PPTNCSA--GPVGDDMFHWQATIMGPEDSPYSGGVFFL--NIHFPSDYPFKPPKVNFT-TK-----IY   94 (166)
T ss_dssp             HHHHHHHHHHS-CCTTEEE--EECSSCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEEC-SC-----CC
T ss_pred             HHHHHHHHHhC-CCCCEEE--EEcCCCcceeeEEEECCCCCCcCCCEEEE--EEeCCCcCCCCCceeeec-cC-----Cc
Confidence            45788877554 2111211  11222222223445554446799988877  899999999999999885 43     24


Q ss_pred             CCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489          121 HPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       121 ~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      |++||.+|+||+..|. +|++ ..+|..++..|..+|..
T Consensus        95 HPNI~~~G~ICL~iL~~~WsP-~~ti~~vL~sI~sll~~  132 (166)
T 2ayv_A           95 HPNINSQGAICLDILKDQWSP-ALTISKVLLSISSLLTD  132 (166)
T ss_dssp             BTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             CCcCCCCCeEEcccccccCCC-CCcHHHHHHHHHHHHhC
Confidence            9999999999999998 8997 78999999999999874

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=98.74  E-value=7.8e-08  Score=84.07  Aligned_cols=102  Identities=21%  Similarity=0.362  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI  116 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~  116 (304)
                      +.+|+..+...-+ ..+    +...++.  +|+...|+|    --.|.|..|.+  .|.||++||+.||.|.+. |+   
T Consensus        35 L~kEl~~l~~~~~-~gi----~~~p~~~--nl~~W~~~I~GP~~TpYegG~f~l--~i~fp~~YP~~PP~V~F~-T~---  101 (179)
T 1i7k_A           35 LQQELMTLMMSGD-KGI----SAFPESD--NLFKWVGTIHGAAGTVYEDLRYKL--SLEFPSGYPYNAPTVKFL-TP---  101 (179)
T ss_dssp             HHHHHHHHHHHCC-TTE----EEEEETT--EEEEEEEEEEBCTTSTTBTCEEEE--EEECCTTTTTSCCEEEES-SC---
T ss_pred             HHHHHHHHHhCCC-CCE----EEEEcCC--cccccEEEEECCCCCCcCCCEEEE--EEECCCcCCCCCceEEEe-cC---
Confidence            4478887766421 111    1222222  555555555    35688888877  899999999999999986 43   


Q ss_pred             ecCCCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489          117 IKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       117 I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                        .-|++||.+|+||+..|. +|.+ ..+|..++..|..+|.+
T Consensus       102 --i~HPNV~~~G~ICL~iL~~~WsP-~~ti~~vL~sI~sll~~  141 (179)
T 1i7k_A          102 --CYHPNVDTQGNISLDILKEKWSA-LYDVRTILLSIQSLLGE  141 (179)
T ss_dssp             --CCSTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             --CccCccccCCeEEcccCcCcCCC-CCCHHHHHHHHHHHHhC
Confidence              249999999999999998 6997 78999999999998864

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=98.73  E-value=1.2e-07  Score=80.47  Aligned_cols=106  Identities=19%  Similarity=0.294  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP  120 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~  120 (304)
                      +.+|+..+.+.-+ -....  .-.+|.-..--..|.|.---.|.|..|.+  .|.++++||+.||.|.+. |+     .-
T Consensus         9 L~kEl~~l~~~~~-~~i~~--~p~~~nl~~w~~~i~Gp~~tpyegg~f~~--~i~fp~~YP~~pP~v~f~-t~-----i~   77 (151)
T 4gpr_A            9 IQKELREIQQDPP-CNCSA--GPVGDDIFHWTATITGPDDSPYQGGLFFL--DVHFPVDYPFKAPRVTFM-TK-----VY   77 (151)
T ss_dssp             HHHHHHHHHHSCC-TTEEE--EESSSCTTEEEEEEECCSSSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC-----CC
T ss_pred             HHHHHHHHHhCCC-CCEEE--EEcCCCceEEEEEEeCCCCCCcCCCEEEE--EEECCCCCCCCcceeEEe-cC-----cc
Confidence            3477777755422 11111  11222222333445554446789988887  889999999999999885 43     23


Q ss_pred             CCcccCCCceecccc-ccccCCCCCHHHHHHHHHHHhcc
Q 039489          121 HPHVTPSGLVSIPYL-QNWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       121 ~~~Vd~~G~v~lpyL-~~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      |++|+.+|+||+..| .+|++ ..+|..++..|..+|..
T Consensus        78 HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~  115 (151)
T 4gpr_A           78 HPNINKNGVICLDILKDQWSP-ALTLSRVLLSISSLLTD  115 (151)
T ss_dssp             BTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHC
T ss_pred             cceECCCCEEEcccccCCCCC-CCcHHHHHHHHHHHhcC
Confidence            999999999999999 58997 78999999999999875

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=98.71  E-value=6.2e-08  Score=83.07  Aligned_cols=73  Identities=19%  Similarity=0.304  Sum_probs=61.6

Q ss_pred             ecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHH
Q 039489           77 GTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSAC  155 (304)
Q Consensus        77 GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~  155 (304)
                      |.---.|.|..|.+  .|.+|++||+.||.|.+. |+     .-|++||.+|+||+..|+ +|++ ..+|..++..|..+
T Consensus        42 gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vL~~i~~l  112 (160)
T 1y8x_A           42 CPDEGFYKSGKFVF--SFKVGQGYPHDPPKVKCE-TM-----VYHPNIDLEGNVCLNILREDWKP-VLTINSIIYGLQYL  112 (160)
T ss_dssp             CCSSSTTTTBCEEE--EEECCTTTTTSCCEEEEC-SC-----CCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCEEEE--EEeCCCcCCCCCCEEEEe-cC-----CccCcCCCCCeEEcccchhhccC-CCCHHHHHHHHHHH
Confidence            43334688888777  999999999999999986 43     249999999999999995 8997 78999999999998


Q ss_pred             hcc
Q 039489          156 FSR  158 (304)
Q Consensus       156 F~~  158 (304)
                      |.+
T Consensus       113 l~~  115 (160)
T 1y8x_A          113 FLE  115 (160)
T ss_dssp             HHS
T ss_pred             HhC
Confidence            875

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=98.71  E-value=1.3e-07  Score=80.98  Aligned_cols=106  Identities=17%  Similarity=0.195  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCC-CceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecC
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHND-GRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR  119 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~d-G~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~  119 (304)
                      +.+|+..+...-+ -....  .-.++ .-..--..|.|.---.|.|..|.+  .|.+|++||+.||.|.+. |+     .
T Consensus         8 L~kEl~~l~~~~~-~gi~~--~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i   76 (164)
T 3h8k_A            8 LMAEYKQLTLNPP-EGIVA--GPMNEENFFEWEALIMGPEDTCFEFGVFPA--ILSFPLDYPLSPPKMRFT-CE-----M   76 (164)
T ss_dssp             HHHHHHHHHHSCC-TTEEE--EESSTTCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEEC-SC-----C
T ss_pred             HHHHHHHHHhCCC-CCEEE--EECCCCCccEEEEEEeCCCCCCCCCCEEEE--EEECCCCCCCCCCEEEEc-CC-----C
Confidence            4477877765422 11111  11122 222233445554446799999886  889999999999999886 43     2


Q ss_pred             CCCcccCCCceecccc--------------ccccCCCCCHHHHHHHHHHHhcc
Q 039489          120 PHPHVTPSGLVSIPYL--------------QNWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       120 ~~~~Vd~~G~v~lpyL--------------~~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      -|++|+.+|+||+..|              .+|++ ..+|..++..|...|..
T Consensus        77 ~HPNV~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p-~~ti~~vL~~i~~ll~~  128 (164)
T 3h8k_A           77 FHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP-VQSVEKILLSVVSMLAE  128 (164)
T ss_dssp             CCTTBCTTSBBCCGGGSCSCSCCCSCCTTCCCCCT-TCCHHHHHHHHHHHHHS
T ss_pred             ccCCCCCCCcEeeecccCcccccccccccccCCCC-CCcHHHHHHHHHHHHcC
Confidence            3999999999999999              47987 78899999999998875

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=98.71  E-value=6.6e-08  Score=84.55  Aligned_cols=73  Identities=19%  Similarity=0.309  Sum_probs=61.7

Q ss_pred             ecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHH
Q 039489           77 GTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSAC  155 (304)
Q Consensus        77 GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~  155 (304)
                      |.---.|.|..|.+  .|.+|++||+.||.|.+. |+     .-|++||.+|+||+..|+ +|++ ..+|..++..|..+
T Consensus        62 gP~~tpYegg~f~~--~i~fp~~YP~~PP~v~F~-t~-----i~HPNV~~~G~iCl~iL~~~W~p-~~~i~~vL~si~~l  132 (180)
T 2nvu_C           62 CPDEGFYKSGKFVF--SFKVGQGYPHDPPKVKCE-TM-----VYHPNIDLEGNVALNILREDWKP-VLTINSIIYGLQYL  132 (180)
T ss_dssp             CCCSGGGTTBCEEE--EEECCTTTTTSCCEEEEC-SC-----CCBTTBCTTSBBCCGGGTTSCCT-TCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCEEEE--EEeCCCcCCCCCCcCcee-cc-----CccCCCCCCCcEEcccccccCCC-CCCHHHHHHHHHHH
Confidence            43345688888777  899999999999999996 43     249999999999999995 7997 78999999999998


Q ss_pred             hcc
Q 039489          156 FSR  158 (304)
Q Consensus       156 F~~  158 (304)
                      |.+
T Consensus       133 l~~  135 (180)
T 2nvu_C          133 FLE  135 (180)
T ss_dssp             HHS
T ss_pred             HhC
Confidence            874

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=98.70  E-value=1.3e-07  Score=83.56  Aligned_cols=76  Identities=20%  Similarity=0.378  Sum_probs=63.1

Q ss_pred             EEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCHHHHHHHH
Q 039489           74 QADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVREL  152 (304)
Q Consensus        74 ~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l  152 (304)
                      .|.|.---.|.|..|.+  .|.||++||+.||.|.+. |.     .-|++||.+|+||+.+|. +|.+ ..+|..+|..|
T Consensus        83 ~I~GP~~TpYegG~f~l--~i~fp~~YP~~PP~V~F~-T~-----i~HPNV~~~G~ICL~iL~~~WsP-~~ti~~vL~sI  153 (194)
T 3bzh_A           83 TILGPPGSVYEGGVFFL--DITFTPEYPFKPPKVTFR-TR-----IYHCNINSQGVICLDILKDNWSP-ALTISKVLLSI  153 (194)
T ss_dssp             EEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC-----CCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHH
T ss_pred             EEeCCCCCCccCCEEEE--EEECCCcCCCCCcccccc-CC-----CccceECCCCceechhhhccCCC-cCcHHHHHHHH
Confidence            34443334688988777  889999999999999986 43     249999999999999998 7997 78999999999


Q ss_pred             HHHhcc
Q 039489          153 SACFSR  158 (304)
Q Consensus       153 ~~~F~~  158 (304)
                      ..+|..
T Consensus       154 ~~ll~~  159 (194)
T 3bzh_A          154 CSLLTD  159 (194)
T ss_dssp             HHHHHS
T ss_pred             HHHHhC
Confidence            998864

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=98.70  E-value=1.8e-07  Score=80.53  Aligned_cols=107  Identities=20%  Similarity=0.397  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEeccc----ccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI  116 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIP----i~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~  116 (304)
                      +.+++..+.+.-+ -.........+||+ .+|+...|+|.    ..|.|..|.+  .|.++++||+.||.|.+. |.   
T Consensus        15 L~kEl~~l~~~~p-~gi~~~p~~~~d~~-~nl~~W~~~I~Gp~~Tpyegg~f~l--~i~fp~~YP~~pP~v~F~-t~---   86 (163)
T 3rcz_B           15 LQEERKQWRRDHP-FGFYAKPCKSSDGG-LDLMNWKVGIPGKPKTSWEGGLYKL--TMAFPEEYPTRPPKCRFT-PP---   86 (163)
T ss_dssp             HHHHHHHHHHSCC-TTCEEEEEECTTSS-EEEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC---
T ss_pred             HHHHHHHHHhCCC-CCEEEEEccCcCCC-CCccEEEEEEECCCCCCcCCCEEEE--EEECCCCCCCCCCEEEEe-CC---
Confidence            4478888766533 12222222333563 46777677663    4688988886  899999999999999986 43   


Q ss_pred             ecCCCCcccCCCceecccccc---ccCCCCCHHHHHHHHHHHhcc
Q 039489          117 IKRPHPHVTPSGLVSIPYLQN---WIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       117 I~~~~~~Vd~~G~v~lpyL~~---W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                        .-|++||.+|+||+..|..   |++ ..+|..++..|..+|.+
T Consensus        87 --i~HPnV~~~G~iCl~iL~~~~~W~p-~~ti~~vL~~i~~ll~~  128 (163)
T 3rcz_B           87 --LFHPNVYPSGTVCLSILNEEEGWKP-AITIKQILLGIQDLLDD  128 (163)
T ss_dssp             --CCSTTBCTTSBBCCGGGCTTTTCCT-TCCHHHHHHHHHHHHTS
T ss_pred             --CccCCCCCCCcEeccccCCCCCcCC-cCcHHHHHHHHHHHHhC
Confidence              3499999999999999974   997 78999999999998843

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=98.69  E-value=1.3e-07  Score=80.40  Aligned_cols=103  Identities=22%  Similarity=0.425  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEeccc---ccccCcccceeEEEeecccCCCCCCeEEEecCCCcee
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVP---MPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMII  117 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIP---i~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I  117 (304)
                      +.+|+..+.+.-+.   ..... ..++  .+|+...|+|.   -.|.|..|.+  .|.+|++||+.||.|.+. |+    
T Consensus         9 L~kEl~~l~~~~~~---~i~~~-~~~~--~~l~~w~~~I~P~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~----   75 (155)
T 1wzv_A            9 VVKELEDLQKKPPP---YLRNL-SSDD--ANVLVWHALLLPDQPPYHLKAFNL--RISFPPEYPFKPPMIKFT-TK----   75 (155)
T ss_dssp             HHHHHHHHHHSCCT---TEEEE-EECS--SCTTEEEEEECCCSTTGGGEEEEE--EEECCTTTTSSCCEEEES-SC----
T ss_pred             HHHHHHHHHhCCCC---CEEEE-ecCC--CchheEEEEEcCCCCCCCCCEEEE--EEECCCCCCCCCCcceee-CC----
Confidence            45778777654331   11110 1232  25666777764   2366666555  999999999999999986 43    


Q ss_pred             cCCCCcccCCCceecccc--ccccCCCCCHHHHHHHHHHHhcc
Q 039489          118 KRPHPHVTPSGLVSIPYL--QNWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       118 ~~~~~~Vd~~G~v~lpyL--~~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                       .-|++||.+|+||+..|  ++|++ ..+|..++..|..+|.+
T Consensus        76 -i~HPnV~~~G~iCl~iL~~~~W~p-~~~i~~vl~~i~~ll~~  116 (155)
T 1wzv_A           76 -IYHPNVDENGQICLPIISSENWKP-CTKTCQVLEALNVLVNR  116 (155)
T ss_dssp             -CCBTTBCTTCBCCCGGGCTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             -CccCcCCCCCeEeecCCCccCCCC-CCcHHHHHHHHHHHHhC
Confidence             24999999999999999  58996 78999999999999874

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=98.69  E-value=1.1e-07  Score=80.46  Aligned_cols=76  Identities=22%  Similarity=0.409  Sum_probs=63.0

Q ss_pred             EEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccC-CCceeccccc-cccCCCCCHHHHHHH
Q 039489           74 QADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTP-SGLVSIPYLQ-NWIYPSSNLVDLVRE  151 (304)
Q Consensus        74 ~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~-~G~v~lpyL~-~W~~~~s~L~~Lv~~  151 (304)
                      .|.|.---.|.|..|.+  .|.+|++||+.||.|.+. |.     .-|++||. +|+||+.+|. +|++ ..+|..++..
T Consensus        37 ~I~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~HPni~~~~G~iCl~iL~~~W~p-~~~i~~vl~~  107 (149)
T 1fxt_A           37 TFLGPPGTPYEGGKFVV--DIEVPMEYPFKPPKMQFD-TK-----VYHPNISSVTGAICLDILKNAWSP-VITLKSALIS  107 (149)
T ss_dssp             EEECCSSSTTCSSEEEE--EEECCTTTTSSCCEEEES-SC-----CCBTTBCSSSCCBCCHHHHTSCCT-TCCHHHHHHH
T ss_pred             EEECCCCCCcCCcEEEE--EEECCCCCCCCCCEEEEe-CC-----CccCCCcCCCCeEeCCcCCCCCCC-CCcHHHHHHH
Confidence            33443335688988876  999999999999999996 43     24999998 9999999997 6997 7899999999


Q ss_pred             HHHHhcc
Q 039489          152 LSACFSR  158 (304)
Q Consensus       152 l~~~F~~  158 (304)
                      |..+|..
T Consensus       108 i~~ll~~  114 (149)
T 1fxt_A          108 LQALLQS  114 (149)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHhC
Confidence            9999875

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=98.67  E-value=4.8e-08  Score=83.03  Aligned_cols=79  Identities=27%  Similarity=0.501  Sum_probs=65.6

Q ss_pred             eEEEEEeccc---ccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc--cccCCCCCH
Q 039489           71 NLLQADGTVP---MPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ--NWIYPSSNL  145 (304)
Q Consensus        71 ~LL~L~GtIP---i~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~--~W~~~~s~L  145 (304)
                      +|+...|+|.   -.|.|..|.+  .|.+|++||+.||.|.+. |+     .-|++|+.+|+||+..|+  +|++ ..+|
T Consensus        31 ~l~~w~~~i~P~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~HPnv~~~G~iCl~iL~~~~W~p-~~~i  101 (154)
T 1c4z_D           31 NLLTWQGLIVPDNPPYDKGAFRI--EINFPAEYPFKPPKITFK-TK-----IYHPNIDEKGQVCLPVISAENWKP-ATKT  101 (154)
T ss_dssp             SSSEEEEEECCCSSSCCSCCEEE--EEECCTTTTTSCCEEEES-SC-----CCCTTBCTTCBBCCTTTSSSSCCT-TCCH
T ss_pred             chheEEEEEeCCCCCccCCeEEE--EEEeCCCCCCCCCEEEEe-CC-----CccccCCCCCEEECCCCCCCCCCC-CCcH
Confidence            5666667663   3488888776  999999999999999996 43     249999999999999995  8997 7789


Q ss_pred             HHHHHHHHHHhcc
Q 039489          146 VDLVRELSACFSR  158 (304)
Q Consensus       146 ~~Lv~~l~~~F~~  158 (304)
                      ..++..+..+|.+
T Consensus       102 ~~vl~~i~~ll~~  114 (154)
T 1c4z_D          102 DQVIQSLIALVND  114 (154)
T ss_dssp             HHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999998864

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=98.64  E-value=7.9e-08  Score=82.56  Aligned_cols=76  Identities=21%  Similarity=0.428  Sum_probs=63.1

Q ss_pred             EEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceecccc--------------cccc
Q 039489           74 QADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYL--------------QNWI  139 (304)
Q Consensus        74 ~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL--------------~~W~  139 (304)
                      .|.|.---.|.|..|.+  .|.+|++||+.||.|.+. |.     .-|++|+.+|+||+..|              .+|+
T Consensus        40 ~i~GP~~tpYegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~HPNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~  111 (165)
T 2ucz_A           40 LIQGPPDTPYADGVFNA--KLEFPKDYPLSPPKLTFT-PS-----ILHPNIYPNGEVCISILHSPGDDPNMYELAEERWS  111 (165)
T ss_dssp             EEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC-----CSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCC
T ss_pred             EEECCCCCCccCcEEEE--EEECCccCCCCCCEEEEe-CC-----CccCCCCCCCcEeehhhCCccccccccCCCCCCCC
Confidence            44554445789988877  899999999999999986 43     24999999999999999              4798


Q ss_pred             CCCCCHHHHHHHHHHHhcc
Q 039489          140 YPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       140 ~~~s~L~~Lv~~l~~~F~~  158 (304)
                      + ..+|..++..|+.+|.+
T Consensus       112 p-~~~i~~vL~si~~ll~~  129 (165)
T 2ucz_A          112 P-VQSVEKILLSVMSMLSE  129 (165)
T ss_dssp             T-TCCHHHHHHHHHHHHHS
T ss_pred             C-cCcHHHHHHHHHHHHhC
Confidence            7 78999999999998864

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=98.64  E-value=2.8e-07  Score=79.61  Aligned_cols=76  Identities=22%  Similarity=0.439  Sum_probs=63.3

Q ss_pred             EEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-----cccCCCCCHHHH
Q 039489           74 QADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-----NWIYPSSNLVDL  148 (304)
Q Consensus        74 ~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-----~W~~~~s~L~~L  148 (304)
                      .|.|.---.|.|..|.+  .|.+|++||+.||.|.+. |+     .-|++||.+|+||+..|+     +|++ ..+|..+
T Consensus        39 ~I~GP~~tpYegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~HPNv~~~G~iCl~iL~~~~~~~W~p-~~~i~~v  109 (169)
T 1yh2_A           39 QILGGANTPYEKGVFKL--EVIIPERYPFEPPQIRFL-TP-----IYHPNIDSAGRICLDVLKLPPKGAWRP-SLNIATV  109 (169)
T ss_dssp             EEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC-----CCBTTBCTTCBBCCGGGSCTTTSCCCT-TSCHHHH
T ss_pred             EEECCCCCCccCCEEEE--EEEeCCCCCCCCcEEEee-cC-----CccccCCcCCeEecccccCCcccCCCC-CCcHHHH
Confidence            34454345789988887  889999999999999986 43     249999999999999995     8997 7899999


Q ss_pred             HHHHHHHhcc
Q 039489          149 VRELSACFSR  158 (304)
Q Consensus       149 v~~l~~~F~~  158 (304)
                      +..|..+|..
T Consensus       110 L~si~~ll~~  119 (169)
T 1yh2_A          110 LTSIQLLMSE  119 (169)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHhC
Confidence            9999998865

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=98.63  E-value=1.5e-07  Score=84.71  Aligned_cols=102  Identities=19%  Similarity=0.409  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI  116 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~  116 (304)
                      +.+|+..+...-+ -.+.  ....+|    +|+...|+|    --.|.|..|.+  .|.||++||+.||.|.+. |+  +
T Consensus        28 L~kEl~~l~~~~~-~gi~--~~p~~~----nl~~W~~~I~GP~~TpYegG~f~l--~i~fP~~YP~~PP~V~F~-T~--i   95 (216)
T 2pwq_A           28 LQKELKDIENENV-QEID--AHIKDS----NFFEWVGFIKGPEGTPYEGGHFTL--AITIPNDYPYNPPKIKFV-TK--I   95 (216)
T ss_dssp             HHHHHHHHHHSCT-TTEE--EEECSS----CTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC--C
T ss_pred             HHHHHHHHHhCCC-CCEE--EEEcCC----ccceeEEEEeCCCCCCccceEEEE--EEECCCcCCCCCCccccc-CC--C
Confidence            4578887755432 1111  122222    344445544    35799988877  899999999999999986 43  2


Q ss_pred             ecCCCCccc-CCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489          117 IKRPHPHVT-PSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       117 I~~~~~~Vd-~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                         -|++|| .+|.||+..|. +|++ ..+|..++..|..+|..
T Consensus        96 ---~HPNI~~~~G~ICL~iL~~~WsP-~~ti~~VL~sI~sLL~~  135 (216)
T 2pwq_A           96 ---WHPNISSQTGAICLDVLKNEWSP-ALTIRTALLSIQALLSD  135 (216)
T ss_dssp             ---CBTTBCTTTCBBCCHHHHHHCCT-TCCHHHHHHHHHHHHHS
T ss_pred             ---cCCCCcCCCCEEEchhhcccCCC-CCcHHHHHHHHHHHHhC
Confidence               399999 58999999998 5997 78999999999999875

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=98.62  E-value=1.1e-07  Score=83.85  Aligned_cols=76  Identities=22%  Similarity=0.315  Sum_probs=63.4

Q ss_pred             EEEeccc---ccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCHHHHH
Q 039489           74 QADGTVP---MPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLV  149 (304)
Q Consensus        74 ~L~GtIP---i~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv  149 (304)
                      ...|+|.   -.|.|..|.+  .|.+|++||+.||.|.+. |+     .-|++||.+|+||+..|. +|++ ..+|..++
T Consensus        65 ~w~~~I~p~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~HPnV~~~G~iCl~iL~~~W~p-~~~i~~vL  135 (190)
T 3o2u_A           65 KLEVIVRPDEGYYNYGSINF--NLDFNEVYPIEPPKVVCL-KK-----IFHPNIDLKGNVCLNILREDWSP-ALDLQSII  135 (190)
T ss_dssp             EEEEEECCSSSTTTTCCEEE--EEECCTTTTTSCCEEEEC-SC-----CCCTTBCTTSBBCCGGGTTTCCT-TCCHHHHH
T ss_pred             eEEEEEcCCCCCCCCCEEEE--EEECCCCCCCCCceeEEe-cC-----cccCCCCCCCeEechhccCCCCC-CCCHHHHH
Confidence            5555552   4688888876  889999999999999886 43     249999999999999995 8987 88999999


Q ss_pred             HHHHHHhcc
Q 039489          150 RELSACFSR  158 (304)
Q Consensus       150 ~~l~~~F~~  158 (304)
                      ..|...|.+
T Consensus       136 ~~i~~ll~~  144 (190)
T 3o2u_A          136 TGLLFLFLE  144 (190)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHhC
Confidence            999998875

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=98.61  E-value=7.1e-08  Score=82.57  Aligned_cols=76  Identities=22%  Similarity=0.382  Sum_probs=63.8

Q ss_pred             EEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCce---eccccccccCCCCCHHHHHH
Q 039489           74 QADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLV---SIPYLQNWIYPSSNLVDLVR  150 (304)
Q Consensus        74 ~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v---~lpyL~~W~~~~s~L~~Lv~  150 (304)
                      .|.|.---.|+|..|.+  .|.+|++||+.||.|.+. |+     .-|++||.+|+|   |+..|.+|++ ..+|..++.
T Consensus        60 ~I~GP~~TpYegG~f~l--~i~fp~~YP~~PP~v~F~-t~-----i~HPNV~~~G~icisCL~iL~~WsP-~~ti~~vL~  130 (156)
T 2q0v_A           60 TIFGQPGTVFENRIYSL--TIFCDDNYPDSPPTVKFD-TK-----IEMSCVDNCGRVIKNNLHILKNWNR-NYTIETILI  130 (156)
T ss_dssp             EEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-BC-----CCCTTBCTTSBBCGGGSHHHHTCCT-TCCHHHHHH
T ss_pred             EEECCCCCCcCCcEEEE--EEECCCcCCCCCCeEEEE-cc-----cccCCCccCCeEehhhcccccCCCC-cCcHHHHHH
Confidence            44443345699988876  899999999999999886 43     249999999999   8999999997 789999999


Q ss_pred             HHHHHhcc
Q 039489          151 ELSACFSR  158 (304)
Q Consensus       151 ~l~~~F~~  158 (304)
                      .|+.+|..
T Consensus       131 sI~~ll~~  138 (156)
T 2q0v_A          131 SLRQEMLS  138 (156)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHHhC
Confidence            99998875

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=98.60  E-value=3e-07  Score=79.59  Aligned_cols=105  Identities=19%  Similarity=0.314  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHhCC-CCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecC
Q 039489           41 IRQHLLTLISTFP-SLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR  119 (304)
Q Consensus        41 v~~dv~~vl~~yp-~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~  119 (304)
                      +.+|+..+.+.-+ ++.    ....+|.-..--..|.|.---.|+|..|.+  .|.+|++||+.||.|.+. |+     .
T Consensus        28 L~kEl~~l~~~~~~gi~----~~p~~~nl~~W~~~I~GP~~TpYegG~f~l--~i~fp~~YP~~PP~V~F~-T~-----i   95 (169)
T 1yrv_A           28 LHRDFCDLKENNYKGIT----AKPVSEDMMEWEVEIEGLQNSVWQGLVFQL--TIHFTSEYNYAPPVVKFI-TI-----P   95 (169)
T ss_dssp             HHHHHHHHHHHCCTTEE----EEECSTTSCEEEEEEECCTTSTTTTCEEEE--EEECCTTBTTBCCEEEES-SC-----C
T ss_pred             HHHHHHHHHhCCCCCEE----EEEcCCccccceeEEECCCCCCccceEEEE--EEECCccCCCCCCcceec-CC-----C
Confidence            4577777765422 222    222223222223344444345788988876  899999999999999986 43     2


Q ss_pred             CCCcc-cCCCceeccccc---cccCCCCCHHHHHHHHHHHhcc
Q 039489          120 PHPHV-TPSGLVSIPYLQ---NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       120 ~~~~V-d~~G~v~lpyL~---~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      -|++| +.+|+||+..|.   +|++ ..+|..++..|..+|.+
T Consensus        96 ~HPNI~~~~G~ICL~iL~~~~~WsP-~~ti~~vL~sI~sll~~  137 (169)
T 1yrv_A           96 FHPNVDPHTGQPCIDFLDNPEKWNT-NYTLSSILLALQVMLSN  137 (169)
T ss_dssp             CCTTBCTTTCCBCCHHHHCGGGCCT-TCCHHHHHHHHHHHHTS
T ss_pred             ccCcccCCCCeEeehhhcCCcCCCC-cCCHHHHHHHHHHHHhC
Confidence            49999 799999999996   8997 88999999999999864

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=98.59  E-value=4.1e-07  Score=78.82  Aligned_cols=78  Identities=21%  Similarity=0.384  Sum_probs=64.3

Q ss_pred             EEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCccc-CCCceeccccc--cccCCCCCHHHHH
Q 039489           73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVT-PSGLVSIPYLQ--NWIYPSSNLVDLV  149 (304)
Q Consensus        73 L~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd-~~G~v~lpyL~--~W~~~~s~L~~Lv  149 (304)
                      ..|.|.---.|.|..|.+  .|.+|++||+.||.|.+..+.     .-|++|| .+|+||+..|+  +|++ ..+|..++
T Consensus        52 ~~I~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~t~~-----i~HPni~~~~G~iCl~iL~~~~W~p-~~~i~~vL  123 (172)
T 2y9m_A           52 AIISGPSDTPYENHQFRI--LIEVPSSYPMNPPKISFMQNN-----ILHCNVKSATGEICLNILKPEEWTP-VWDLLHCV  123 (172)
T ss_dssp             EEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEECTTS-----CCCTTEETTTTEECCGGGSTTTCCT-TCCHHHHH
T ss_pred             EEEECCCCCcccCCEEEE--EEECCCcCCCCCCEEEEeeCC-----eecCCCcCCCCEEeccccCCCCCCC-cCcHHHHH
Confidence            344554446789988877  899999999999999996322     2499997 79999999996  8997 78999999


Q ss_pred             HHHHHHhcc
Q 039489          150 RELSACFSR  158 (304)
Q Consensus       150 ~~l~~~F~~  158 (304)
                      ..|..+|.+
T Consensus       124 ~si~~ll~~  132 (172)
T 2y9m_A          124 HAVWRLLRE  132 (172)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHhC
Confidence            999998875

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=98.59  E-value=2.9e-07  Score=81.37  Aligned_cols=79  Identities=20%  Similarity=0.470  Sum_probs=65.8

Q ss_pred             eEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCccc-CCCceeccccc-cccCCCCC
Q 039489           71 NLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVT-PSGLVSIPYLQ-NWIYPSSN  144 (304)
Q Consensus        71 ~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd-~~G~v~lpyL~-~W~~~~s~  144 (304)
                      +|+...|+|    --.|.|..|.+  .|.+|++||+.||.|.+. |+  +   -|++|+ .+|+||+..|. +|++ ..+
T Consensus        73 nl~~W~~~I~GP~~TpYegG~f~l--~i~fp~~YP~~PP~V~F~-T~--i---~HPNI~~~~G~ICL~iL~~~WsP-~~t  143 (193)
T 2f4z_A           73 DIHRWRGFIAGPLGTPYEGGHFTL--DIVIPPDYPYNPPKMKFV-TK--I---WHPNISSQTGAICLDILKHEWSP-ALT  143 (193)
T ss_dssp             EEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC--C---CBTTBCTTTCBBCCGGGTTTCCT-TSC
T ss_pred             CcceEEEEEeCCCCCCcCCCEEEE--EEECCCcCCCCCCeEEEe-cC--C---ccCCCcCCCCEEECccccccCCC-CCC
Confidence            566666666    24688888776  899999999999999986 43  2   399999 59999999998 5997 789


Q ss_pred             HHHHHHHHHHHhcc
Q 039489          145 LVDLVRELSACFSR  158 (304)
Q Consensus       145 L~~Lv~~l~~~F~~  158 (304)
                      |..++..|..+|..
T Consensus       144 i~~vL~sI~sll~~  157 (193)
T 2f4z_A          144 IRTALLSIQAMLAD  157 (193)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999998874

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=98.58  E-value=3.7e-07  Score=78.65  Aligned_cols=80  Identities=24%  Similarity=0.394  Sum_probs=62.0

Q ss_pred             eeEEEEEeccccccc--CcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCHH
Q 039489           70 VNLLQADGTVPMPFQ--GVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLV  146 (304)
Q Consensus        70 ~~LL~L~GtIPi~y~--g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~  146 (304)
                      .--+.|.|.--..|.  |..|.+  .|.++++||+.||.|.+. |+  +   -|++|+.+|+||+..|. +|++ ..++.
T Consensus        51 ~w~~~i~Gp~~tpye~~gg~f~~--~i~fp~~YP~~pP~v~f~-t~--i---~HPnv~~~G~iCl~il~~~W~p-~~~i~  121 (167)
T 4ds2_A           51 NWILKVKAPADSVYGGAGNTYQL--SVLFSDDYPHEPPTVRFV-TP--V---YSPLVTGEGGICDRMVNDFWTP-DQHAS  121 (167)
T ss_dssp             EEEEEEECCTTSGGGTTCCEEEE--EEECCTTTTTSCCEEEES-SC--C---CCSSCCTTSCCCTHHHHTTCCT-TSCHH
T ss_pred             EEEEEEECCCCCCccCCCCEEEE--EEECCCCCCCCCCEEEEe-CC--c---ccccCCCCCEEEcccCcCCCCC-CCChH
Confidence            334455664455788  777776  889999999999999986 43  2   39999999999999995 8987 77887


Q ss_pred             HH-HHHHHHHhcc
Q 039489          147 DL-VRELSACFSR  158 (304)
Q Consensus       147 ~L-v~~l~~~F~~  158 (304)
                      .+ +..|..+|..
T Consensus       122 ~vll~~l~~l~~~  134 (167)
T 4ds2_A          122 DVIKLVLDRVFSQ  134 (167)
T ss_dssp             HHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhc
Confidence            74 4567777775

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=98.58  E-value=3.2e-07  Score=78.91  Aligned_cols=73  Identities=25%  Similarity=0.396  Sum_probs=61.1

Q ss_pred             ecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-------cccCCCCCHHHHH
Q 039489           77 GTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-------NWIYPSSNLVDLV  149 (304)
Q Consensus        77 GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-------~W~~~~s~L~~Lv  149 (304)
                      |----.|.|..|.+  .|.||++||+.||.|.+. |+     .-|++|+.+|+||+..|.       +|++ ..+|..++
T Consensus        52 gp~~tpyegg~f~~--~i~fp~~YP~~pP~v~f~-t~-----i~HPnv~~~G~iCl~iL~~~~~~~~~W~p-~~~i~~vl  122 (167)
T 3fn1_B           52 TPDEGYYQGGKFQF--ETEVPDAYNMVPPKVKCL-TK-----IWHPNITETGEICLSLLREHSIDGTGWAP-TRTLKDVV  122 (167)
T ss_dssp             CCSSSTTTTCCEEE--EEECCTTBTTBCCEEEEC-SC-----CCCSSBCTTCCBCCGGGSBCSSSTTSBCT-TCCHHHHH
T ss_pred             CCCCCccCCCEEEE--EEECCCCCCCCCCeeEec-CC-----cccCCCCCCCEEechhhccCCCCCCCCCC-cCcHHHHH
Confidence            43334688988886  889999999999999885 43     249999999999999998       4886 78999999


Q ss_pred             HHHHHHhcc
Q 039489          150 RELSACFSR  158 (304)
Q Consensus       150 ~~l~~~F~~  158 (304)
                      ..|...|.+
T Consensus       123 ~~i~~ll~~  131 (167)
T 3fn1_B          123 WGLNSLFTD  131 (167)
T ss_dssp             HHHHHTTTT
T ss_pred             HHHHHHHcC
Confidence            999997765

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=98.57  E-value=1.7e-07  Score=81.27  Aligned_cols=106  Identities=18%  Similarity=0.250  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHhCCCCccccceeecC-CCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecC
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHN-DGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR  119 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~-dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~  119 (304)
                      +.+++..+.+. +.-....  ...+ |--..--..|.|.---.|.|..|.+  .|.+|++||+.||.|.+. |+     .
T Consensus        22 L~kEl~~l~~~-~~~gi~~--~p~~~~nl~~W~~~I~GP~~TpYegG~f~~--~i~fp~~YP~~PP~v~F~-T~-----i   90 (172)
T 2awf_A           22 LRRQLAELNKN-PVEGFSA--GLIDDNDLYRWEVLIIGPPDTLYEGGVFKA--HLTFPKDYPLRPPKMKFI-TE-----I   90 (172)
T ss_dssp             HHHHHHHHHHS-CCTTEEE--EESSTTCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEEC-SC-----C
T ss_pred             HHHHHHHHHhC-CCCCEEE--EECCCccccccEEEEeCCCCCCcCCcEEEE--EEECCcccCCCCCccccc-CC-----C
Confidence            45778877554 2111111  1112 1212222345554446799988887  899999999999999986 43     2


Q ss_pred             CCCcccCCCceeccccc--------------cccCCCCCHHHHHHHHHHHhcc
Q 039489          120 PHPHVTPSGLVSIPYLQ--------------NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       120 ~~~~Vd~~G~v~lpyL~--------------~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      -|++|+.+|+||+..|.              +|++ ..+|..++..|+.+|.+
T Consensus        91 ~HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP-~~ti~~vL~sI~sll~~  142 (172)
T 2awf_A           91 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLP-IHTVETIMISVISMLAD  142 (172)
T ss_dssp             CCTTBCTTCBBCCGGGSCC---------CTTSCCT-TCCHHHHHHHHHHHHSC
T ss_pred             ccCCCCCCCcEehhhcCCcccccccccccCCCCCC-cCcHHHHHHHHHHHHHC
Confidence            49999999999999995              6887 78999999999998864

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=98.55  E-value=2e-07  Score=81.61  Aligned_cols=106  Identities=16%  Similarity=0.226  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHhCC-CCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecC
Q 039489           41 IRQHLLTLISTFP-SLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR  119 (304)
Q Consensus        41 v~~dv~~vl~~yp-~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~  119 (304)
                      +.+++..+...-+ ++...   ....|.-..--+.|.|.---.|.|..|.+  .|.||++||+.||.|.+. |+  +   
T Consensus        12 L~kEl~~l~~~~~~gi~~~---~~~~~nl~~W~~~I~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~--i---   80 (183)
T 3rz3_A           12 LLLELKGLQEEPVEGFRVT---LVDEGDLYNWEVAIFGPPNTYYEGGYFKA--RLKFPIDYPYSPPAFRFL-TK--M---   80 (183)
T ss_dssp             HHHHHHHHHHSCCTTEEEE---ECTTCCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC--C---
T ss_pred             HHHHHHHHHhCCCCCEEEE---ecCccchhheeeeeeCCCCCCCCCCeEEE--EEECCCCCCCCCCeeEec-CC--C---
Confidence            3477777755422 22211   01122222233445554446789988886  889999999999999886 43  2   


Q ss_pred             CCCcccCCCceecccc--------------ccccCCCCCHHHHHHHHHHHhcc
Q 039489          120 PHPHVTPSGLVSIPYL--------------QNWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       120 ~~~~Vd~~G~v~lpyL--------------~~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      -|++|+.+|+||+..|              .+|++ ..+|..++..|+.+|.+
T Consensus        81 ~HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p-~~~i~~vL~si~~ll~~  132 (183)
T 3rz3_A           81 WHPNIYETGDVCISILHPPVDDPQSGELPSERWNP-TQNVRTILLSVISLLNE  132 (183)
T ss_dssp             CCTTBCTTSBBCCTTC--------------CCCCT-TCCHHHHHHHHHHHHHS
T ss_pred             ccCCCCCCCcEehhhcCcccccccccccccCCCCC-cCcHHHHHHHHHHHHhC
Confidence            3999999999999999              47987 77899999999998853

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=98.55  E-value=2.5e-07  Score=81.92  Aligned_cols=76  Identities=26%  Similarity=0.522  Sum_probs=62.9

Q ss_pred             EEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccC-CCceeccccc-cccCCCCCHHHHHHH
Q 039489           74 QADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTP-SGLVSIPYLQ-NWIYPSSNLVDLVRE  151 (304)
Q Consensus        74 ~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~-~G~v~lpyL~-~W~~~~s~L~~Lv~~  151 (304)
                      .|.|.---.|.|..|.+  .|.+|.+||+.||.|.+. |+     .-|++||. +|+||+.+|. +|++ ..+|..++..
T Consensus        43 ~i~Gp~~tpyegg~f~~--~i~fp~~YP~~pP~v~f~-t~-----i~HPnv~~~~G~iCl~iL~~~W~p-~~~i~~vL~~  113 (201)
T 3k9o_A           43 EIAGPPDTPYEGGRYQL--EIKIPETYPFNPPKVRFI-TK-----IWHPNISSVTGAICLDILKDQWAA-AMTLRTVLLS  113 (201)
T ss_dssp             EEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC-----CCBTTBCTTTCBBCCGGGTTTCCT-TCCHHHHHHH
T ss_pred             EEECCCCCCCCCCEEEE--EEECCCcCCCCCCccccc-cC-----cccCCCcCCCCeeeCcccccCCCC-CCCHHHHHHH
Confidence            34444446789988876  889999999999999985 43     24999995 9999999995 8987 8899999999


Q ss_pred             HHHHhcc
Q 039489          152 LSACFSR  158 (304)
Q Consensus       152 l~~~F~~  158 (304)
                      |...|..
T Consensus       114 i~~ll~~  120 (201)
T 3k9o_A          114 LQALLAA  120 (201)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhcC
Confidence            9998875

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=98.54  E-value=1.4e-07  Score=78.78  Aligned_cols=77  Identities=22%  Similarity=0.320  Sum_probs=64.1

Q ss_pred             EEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCC-Cce--eccccccccCCCCCHHHHH
Q 039489           73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPS-GLV--SIPYLQNWIYPSSNLVDLV  149 (304)
Q Consensus        73 L~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~-G~v--~lpyL~~W~~~~s~L~~Lv  149 (304)
                      ..+.|.---.|+|..|.+  .|.++++||+.||.|.+. |+     .-|++||.+ |+|  |+..|.+|++ ..+|..++
T Consensus        44 ~~i~GP~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~HPnv~~~~G~i~~cL~~l~~W~p-~~~i~~vl  114 (138)
T 1jat_B           44 GTILGPPHSNHENRIYSL--SIDCGPNYPDSPPKVTFI-SK-----INLPCVNPTTGEVQTDFHTLRDWKR-AYTMETLL  114 (138)
T ss_dssp             EEEECCSSSTTTTCEEEE--EEECCTTTTTSCCEEEES-BC-----CCCTTBCTTTCBBCTTSHHHHTCCT-TCCHHHHH
T ss_pred             EEEECCCCCCccceEEEE--EEECCCCCCCCCCceEEE-cc-----cccCCEeCCCCEEeeecccCCCCCC-cCcHHHHH
Confidence            345554455799988877  899999999999999885 43     249999997 999  8888899997 78999999


Q ss_pred             HHHHHHhcc
Q 039489          150 RELSACFSR  158 (304)
Q Consensus       150 ~~l~~~F~~  158 (304)
                      ..+...|.+
T Consensus       115 ~~i~~ll~~  123 (138)
T 1jat_B          115 LDLRKEMAT  123 (138)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHHcC
Confidence            999998864

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=98.54  E-value=2.1e-07  Score=79.96  Aligned_cols=77  Identities=21%  Similarity=0.273  Sum_probs=63.1

Q ss_pred             EEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCccc-CCCceeccccc---cccCCCCCHHHH
Q 039489           73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVT-PSGLVSIPYLQ---NWIYPSSNLVDL  148 (304)
Q Consensus        73 L~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd-~~G~v~lpyL~---~W~~~~s~L~~L  148 (304)
                      ..|.|.---.|+|..|.+  .|.++++||+.||.|.+. |+     .-|++|| .+|+||+.+|+   +|++ ..+|..+
T Consensus        63 ~~I~GP~~TpYegG~f~l--~i~fp~~YP~~PP~v~F~-T~-----i~HPNV~~~~G~ICl~iL~~~~~WsP-~~ti~~v  133 (160)
T 2a4d_A           63 GMIIGPPRTIYENRIYSL--KIECGPKYPEAPPFVRFV-TK-----INMNGVNSSNGVVDPRAISVLAKWQN-SYSIKVV  133 (160)
T ss_dssp             EEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-BC-----CCCTTBCTTTCBBCGGGSHHHHTCCT-TCCHHHH
T ss_pred             EEEECCCCCCccCeEEEE--EEECCCcCCCCCcEEEEe-cC-----ceeCCEECCCCEEehhhcCCccCCCc-cCcHHHH
Confidence            345554445799988876  899999999999999886 43     2499999 69999998884   8997 7899999


Q ss_pred             HHHHHHHhcc
Q 039489          149 VRELSACFSR  158 (304)
Q Consensus       149 v~~l~~~F~~  158 (304)
                      +..|+..|..
T Consensus       134 L~sI~~ll~~  143 (160)
T 2a4d_A          134 LQELRRLMMS  143 (160)
T ss_dssp             HHHHHHHHTS
T ss_pred             HHHHHHHHcc
Confidence            9999999864

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=98.54  E-value=5.6e-07  Score=79.07  Aligned_cols=100  Identities=16%  Similarity=0.273  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI  116 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~  116 (304)
                      +.+|+..+...-+   +.....-.+    .+|+...++|    --.|.|..|.+  .|.+|++||+.||.|.+. |+   
T Consensus        19 L~kEl~~l~~~~~---~~i~~~p~~----~nl~~W~~~I~GP~~TpYegG~f~l--~i~fP~~YP~~PP~v~f~-T~---   85 (187)
T 2f4w_A           19 LKQDYLRIKKDPV---PYICAEPLP----SNILEWHYVVRGPEMTPYEGGYYHG--KLIFPREFPFKPPSIYMI-TP---   85 (187)
T ss_dssp             HHHHHHHHHHSCC---TTEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEEC-SC---
T ss_pred             HHHHHHHHHhCCC---CCEEEEEcC----CccceeEEEEeCCCCCCCCCCEEEE--EEEcCCCCCCCCCccccc-CC---
Confidence            4478887765422   111111112    2566555555    35688988877  889999999999999885 42   


Q ss_pred             ecCCCCcccCCCceecccc----ccccCCCCCHHHHHHHHHHHhcc
Q 039489          117 IKRPHPHVTPSGLVSIPYL----QNWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       117 I~~~~~~Vd~~G~v~lpyL----~~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                          |++|+.+|+||+.+|    ++|++ ..+|..++..|...|..
T Consensus        86 ----~~~~~~~G~ICL~iL~~~~~~W~P-~~ti~~vL~si~sll~~  126 (187)
T 2f4w_A           86 ----NGRFKCNTRLCLSITDFHPDTWNP-AWSVSTILTGLLSFMVE  126 (187)
T ss_dssp             ----CSSBCTTSCBC----------CCT-TCCHHHHHHHHHHHHHS
T ss_pred             ----CceeccCCeEeeeccccCccCCCC-cCcHHHHHHHHHHHhcC
Confidence                778899999999999    58987 88999999999998875

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=98.53  E-value=2e-07  Score=80.84  Aligned_cols=77  Identities=21%  Similarity=0.271  Sum_probs=63.2

Q ss_pred             EEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCccc-CCCceecccc---ccccCCCCCHHHH
Q 039489           73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVT-PSGLVSIPYL---QNWIYPSSNLVDL  148 (304)
Q Consensus        73 L~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd-~~G~v~lpyL---~~W~~~~s~L~~L  148 (304)
                      ..|.|----.|.|..|.+  .|.++++||+.||.|.+. |+     .-|++|| .+|+||+.+|   .+|++ ..+|..+
T Consensus        73 ~~I~GP~~TpYegG~f~l--~i~fp~~YP~~PP~v~F~-T~-----i~HPNV~~~~G~ICl~iL~~~~~WsP-~~ti~~v  143 (170)
T 2hlw_A           73 GMIIGPPRTIYENRIYSL--KIECGPKYPEAPPFVRFV-TK-----INMNGVNSSNGVVDPRAISVLAKWQN-SYSIKVV  143 (170)
T ss_dssp             EEECCCSSSTTSSCCBCE--EEECCSSCTTSCCEEEEC-BC-----CCCSSBCSSSCBBCTTTCHHHHTCCS-SCCHHHH
T ss_pred             EEEeCCCCCCcCCcEEEE--EEECCCCCCCCCCeeEEe-cc-----cccCCEeCCCCEEEhhhcCCCCCCCc-cCcHHHH
Confidence            344554345799998887  899999999999999886 43     2499999 7999998888   58997 7899999


Q ss_pred             HHHHHHHhcc
Q 039489          149 VRELSACFSR  158 (304)
Q Consensus       149 v~~l~~~F~~  158 (304)
                      +..|..+|..
T Consensus       144 L~sI~~ll~~  153 (170)
T 2hlw_A          144 LQELRRLMMS  153 (170)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHcc
Confidence            9999998875

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=98.51  E-value=3.1e-07  Score=84.40  Aligned_cols=76  Identities=28%  Similarity=0.550  Sum_probs=62.8

Q ss_pred             EEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccC-CCceeccccc-cccCCCCCHHHHHHH
Q 039489           74 QADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTP-SGLVSIPYLQ-NWIYPSSNLVDLVRE  151 (304)
Q Consensus        74 ~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~-~G~v~lpyL~-~W~~~~s~L~~Lv~~  151 (304)
                      .|.|.---.|.|..|.+  .|.||.+||+.||.|.+. |+  +   -|++||. +|+||+.+|. +|.+ ..+|..++..
T Consensus        95 ~I~GP~~TpYegG~f~l--~i~fp~~YP~~PP~V~F~-T~--i---~HPNV~~~~G~ICL~iL~~~WsP-~~ti~~vL~s  165 (253)
T 3e46_A           95 EIAGPPDTPYEGGRYQL--EIKIPETYPFNPPKVRFI-TK--I---WHPNISSVTGAICLDILKDQWAA-AMTLRTVLLS  165 (253)
T ss_dssp             EEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC--C---CBTTBCTTTCBBCCGGGTTCCCT-TCCHHHHHHH
T ss_pred             EEECCCCCCcCCCEEEE--EEECCCCCCCCCCeeeec-CC--C---ccCCccCCCCeeecccccCCCCC-CCCHHHHHHH
Confidence            34444445788988877  889999999999999885 43  2   4999995 9999999995 8987 8999999999


Q ss_pred             HHHHhcc
Q 039489          152 LSACFSR  158 (304)
Q Consensus       152 l~~~F~~  158 (304)
                      |..+|..
T Consensus       166 I~~ll~~  172 (253)
T 3e46_A          166 LQALLAA  172 (253)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhcC
Confidence            9998875

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=98.51  E-value=8.3e-07  Score=84.19  Aligned_cols=117  Identities=18%  Similarity=0.402  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHhCCC-Cccccceee--cCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCcee
Q 039489           41 IRQHLLTLISTFPS-LDPKTATFT--HNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMII  117 (304)
Q Consensus        41 v~~dv~~vl~~yp~-L~p~~~~ft--~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I  117 (304)
                      +.+++..+...-+. ...  ..|.  ..|.-..--..|.|.---.|.|..|.+  .|.||.+||+.||.|.+.-..+-.+
T Consensus        81 L~kEl~~L~k~~p~g~~~--~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l--~I~fP~dYP~~PP~V~F~T~~g~~~  156 (323)
T 3ceg_A           81 LAQEAVTLSTSLPLSSSS--SVFVRCDEERLDIMKVLITGPADTPYANGCFEF--DVYFPQDYPSSPPLVNLETTGGHSV  156 (323)
T ss_dssp             HHHHHHHHHHHCCCCSSC--CEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEE--EEECCTTTTTSCCEEEECCSTTTTC
T ss_pred             HHHHHHHHHhCCCCCccc--ceeecccCCCccccEEEEeCCCCCCcCCCEEEE--EEeCCCCCCCCCCeEEEeccCCCcc
Confidence            34677777665432 211  2222  222222222345665556799988877  8899999999999999863222111


Q ss_pred             cCCCCcccCCCceeccccc--------cccCCCCCHHHHHHHHHHHhccCCCC
Q 039489          118 KRPHPHVTPSGLVSIPYLQ--------NWIYPSSNLVDLVRELSACFSREPPL  162 (304)
Q Consensus       118 ~~~~~~Vd~~G~v~lpyL~--------~W~~~~s~L~~Lv~~l~~~F~~~pPl  162 (304)
                       .-|++|+.+|+||+.+|.        +|++..++|..++..|+.+|...-|-
T Consensus       157 -ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn  208 (323)
T 3ceg_A          157 -RFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPY  208 (323)
T ss_dssp             -CCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGG
T ss_pred             -cccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCC
Confidence             239999999999999996        78874458999999999998644343

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=98.50  E-value=1.5e-07  Score=84.53  Aligned_cols=75  Identities=23%  Similarity=0.437  Sum_probs=62.6

Q ss_pred             EEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccC-CCceeccccc-cccCCCCCHHHHHHHH
Q 039489           75 ADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTP-SGLVSIPYLQ-NWIYPSSNLVDLVREL  152 (304)
Q Consensus        75 L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~-~G~v~lpyL~-~W~~~~s~L~~Lv~~l  152 (304)
                      |.|.---.|.|..|.+  .|.+|.+||+.||.|.+. |+  +   -|++||. +|+||+..|. +|++ ..+|..++..|
T Consensus        39 I~GP~~TpYegG~f~l--~i~fP~~YP~~PP~V~F~-T~--i---~HPNI~~~~G~ICL~iL~~~WsP-~~ti~~VL~sI  109 (215)
T 1tte_A           39 FLGPPGTPYEGGKFVV--DIEVPMEYPFKPPKMQFD-TK--V---YHPNISSVTGAICLDILRNAWSP-VITLKSALISL  109 (215)
T ss_dssp             CCEEEEETTEEECCEE--EEECCSCSSSCCCEEEET-TT--C---CCSSSCSSSSCCCSSTTTCCSCT-TCCHHHHHHHH
T ss_pred             EeCCCCCCcCCCEEEE--EEeCCccCCCCCCccccc-CC--C---ccCcCcCCCCEEECccCCCCCCC-cCcHHHHHHHH
Confidence            3343334688888876  899999999999999995 43  2   4999999 9999999998 6997 78999999999


Q ss_pred             HHHhcc
Q 039489          153 SACFSR  158 (304)
Q Consensus       153 ~~~F~~  158 (304)
                      ..+|..
T Consensus       110 ~sLL~~  115 (215)
T 1tte_A          110 QALLQS  115 (215)
T ss_dssp             HHHHTS
T ss_pred             HHHHhC
Confidence            999875

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=98.48  E-value=1.6e-07  Score=82.47  Aligned_cols=80  Identities=15%  Similarity=0.300  Sum_probs=63.7

Q ss_pred             eEEEEEeccc-----ccccC-----------cccceeEEEeecccCCCCCCeEEEecCCCceecCCCC-cccCCCceecc
Q 039489           71 NLLQADGTVP-----MPFQG-----------VTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHP-HVTPSGLVSIP  133 (304)
Q Consensus        71 ~LL~L~GtIP-----i~y~g-----------~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~-~Vd~~G~v~lp  133 (304)
                      +|+...++|-     -.|.|           ..|  -+.|.||++||+.||.|.+. |+  ++   |+ +||.+|.||+.
T Consensus        58 nl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f--~l~i~fp~~YP~~PP~V~f~-tp--i~---hPnnV~~~G~ICL~  129 (186)
T 1zuo_A           58 SLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYI--LLNFSFKDNFPFDPPFVRVV-LP--VL---SGGYVLGGGALCME  129 (186)
T ss_dssp             EEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSE--EEEEECCTTTTSSCCEEEEE-ES--CE---ESTTBCGGGBBCCG
T ss_pred             ccceeEEEEECCCCCCCccccchhhccccCceEE--EEEEECCCCCCCCCCeEEEe-CC--cc---CCCccCCCCcEEec
Confidence            6777777764     23554           344  45899999999999999886 33  33   77 79999999999


Q ss_pred             ccc--cccCCCCCHHHHHHHHHHHhccC
Q 039489          134 YLQ--NWIYPSSNLVDLVRELSACFSRE  159 (304)
Q Consensus       134 yL~--~W~~~~s~L~~Lv~~l~~~F~~~  159 (304)
                      .|.  +|++ ..+|..+|..|+.+|.+-
T Consensus       130 iL~~~~WsP-~~ti~~VL~sI~slL~~p  156 (186)
T 1zuo_A          130 LLTKQGWSS-AYSIESVIMQINATLVKG  156 (186)
T ss_dssp             GGSTTTCCT-TSCHHHHHHHHHHHHHHT
T ss_pred             cCCCCCCCC-cCcHHHHHHHHHHHHcCC
Confidence            996  7997 889999999999998764

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=98.44  E-value=7.6e-07  Score=75.66  Aligned_cols=78  Identities=21%  Similarity=0.376  Sum_probs=62.2

Q ss_pred             eEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCccc-CCCceeccccc-cccCCCCC
Q 039489           71 NLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVT-PSGLVSIPYLQ-NWIYPSSN  144 (304)
Q Consensus        71 ~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd-~~G~v~lpyL~-~W~~~~s~  144 (304)
                      +|....++|    --.|.|..|.+  .|.+|++||+.||.|.+. |.     .-|++|| .+|+||+..|. +|++ ..+
T Consensus        27 ~l~~w~~~i~Gp~~tpyegg~f~~--~i~fp~~YP~~pP~v~f~-t~-----i~HPni~~~~G~iCl~il~~~W~p-~~~   97 (152)
T 2onu_A           27 STQDFDVMFHGPNGTAYEGGIWKV--HVTLPDDYPFASPSIGFM-NK-----LLHPNVDEASGSVCLDVINQTWTP-LYS   97 (152)
T ss_dssp             EEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC-----CCCTTBCTTTCBBCHHHHHHHCCT-TCC
T ss_pred             ccceEEEEEECCCCCcccceEEEE--EEcCcccCCCCCCeEEEe-cC-----CccCcCcCcCCeEecccccccCCC-CCC
Confidence            566655555    35788888876  889999999999999886 43     2499999 59999999997 6997 788


Q ss_pred             HHHHHHH-HHHHhc
Q 039489          145 LVDLVRE-LSACFS  157 (304)
Q Consensus       145 L~~Lv~~-l~~~F~  157 (304)
                      |..++.. +..+|.
T Consensus        98 i~~vl~~ii~~Ll~  111 (152)
T 2onu_A           98 LVNVFEVFLPQLLT  111 (152)
T ss_dssp             HHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            9888877 456665

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=98.38  E-value=3.3e-07  Score=80.11  Aligned_cols=76  Identities=20%  Similarity=0.440  Sum_probs=61.8

Q ss_pred             EEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccC-CCceeccccc-cccCCCCCHHHHHH
Q 039489           73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTP-SGLVSIPYLQ-NWIYPSSNLVDLVR  150 (304)
Q Consensus        73 L~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~-~G~v~lpyL~-~W~~~~s~L~~Lv~  150 (304)
                      ..|.|.---.|.|..|.+  .|.+|++||+.||.|.+. |+     .-|++||. +|+||+..|. +|++ ..+|..++.
T Consensus        55 ~~I~GP~~tpYegG~f~l--~i~fp~~YP~~PP~V~F~-t~-----i~HPNV~~~~G~ICL~iL~~~WsP-~~ti~~iL~  125 (179)
T 2z5d_A           55 VKFYGPQGTPYEGGVWKV--RVDLPDKYPFKSPSIGFM-NK-----IFHPNIDEASGTVCLDVINQTWTA-LYDLTNIFE  125 (179)
T ss_dssp             EEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC-----CCBTTBCTTTCBBCHHHHHHHCCT-TCCTTHHHH
T ss_pred             EEEECCCCCCccCCEEEE--EeeCCCCCCCCCceEEEe-cC-----CccCcCCCCCCeEeccccccCCCC-CCCHHHHHH
Confidence            345554446789988877  889999999999999985 43     24999999 9999999995 8997 788888888


Q ss_pred             H-HHHHhc
Q 039489          151 E-LSACFS  157 (304)
Q Consensus       151 ~-l~~~F~  157 (304)
                      . |..+|.
T Consensus       126 s~I~~Ll~  133 (179)
T 2z5d_A          126 SFLPQLLA  133 (179)
T ss_dssp             THHHHHHH
T ss_pred             HHHHHHHh
Confidence            8 777775

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=98.37  E-value=3.1e-07  Score=79.64  Aligned_cols=101  Identities=18%  Similarity=0.316  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP  120 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~  120 (304)
                      +.+|+..+...-.+      +.. +|.-..--+.|.|.---.|.|..|.+  .|.++++||+.||.|.+. |.     .-
T Consensus        17 L~~El~~l~~~~~~------v~~-~~~l~~w~~~I~GP~~tpyegg~f~~--~i~fp~~YP~~PP~v~F~-t~-----i~   81 (171)
T 1yf9_A           17 REMDYMRLCNSTRK------VYP-SDTVAEFWVEFKGPEGTPYEDGTWML--HVQLPSDYPFKSPSIGFC-NR-----IL   81 (171)
T ss_dssp             HHHHHHHHHSSSSC------EEE-CSSTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC-----CC
T ss_pred             HHHHHHHHHhCCCC------CCC-CCCceEEEEEEECCCCCCccCceEEE--EEEcCCCCCCCCCeEEee-cC-----cc
Confidence            34788887654211      222 23222233445554445789988887  899999999999999985 43     24


Q ss_pred             CCccc-CCCceeccccc-cccCCCCCHHHHHHHH-HHHhc
Q 039489          121 HPHVT-PSGLVSIPYLQ-NWIYPSSNLVDLVREL-SACFS  157 (304)
Q Consensus       121 ~~~Vd-~~G~v~lpyL~-~W~~~~s~L~~Lv~~l-~~~F~  157 (304)
                      |++|| .+|+||+.+|. +|++ ..+|..++..+ ..+|.
T Consensus        82 HPNi~~~~G~iCl~iL~~~W~p-~~~i~~vL~sil~~ll~  120 (171)
T 1yf9_A           82 HPNVDERSGSVCLDVINQTWTP-MYQLENIFDVFLPQLLR  120 (171)
T ss_dssp             BTTBCTTTCBBCHHHHHHHCCT-TCCTHHHHHTHHHHHHH
T ss_pred             cccCcccCCeEeccccccCCCC-CCcHHHHHHHHHHHHHh
Confidence            99999 59999999998 8997 77888888876 46665

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=98.35  E-value=2.7e-06  Score=82.71  Aligned_cols=102  Identities=23%  Similarity=0.416  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI  116 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~  116 (304)
                      +.+|+..+.+.-+. ...  ..  .++  .+|+...|+|    -..|.|..|.+  .|.+|.+||+.||.|.+. |+   
T Consensus         8 L~kEl~~l~~~~~~-~~~--~~--p~~--~nl~~w~~~i~Gp~~tpyegg~f~~--~i~fp~~YP~~pP~v~f~-t~---   74 (399)
T 4ddg_A            8 IHKELNDLARDPPA-QCS--AG--PVG--DDMFHWQATIMGPNDSPYQGGVFFL--TIHFPTDYPFKPPKVAFT-TR---   74 (399)
T ss_dssp             HHHHHHHHHHSCCS-SEE--EE--EET--TEEEEEEEEEECCTTSSSTTCEEEE--EEECCSSTTTSCCEEEES-SC---
T ss_pred             HHHHHHHHHhCCCC-CEE--EE--EcC--CcceEEEEEEECCCCCCCCCCEEEE--EEECCcccCCCCcEEEee-cc---
Confidence            34777777654221 111  11  122  2566666666    35789998886  899999999999999886 43   


Q ss_pred             ecCCCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489          117 IKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       117 I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                        .-|++||.+|+||+..|. +|++ ..++..++..|...|..
T Consensus        75 --i~HPnv~~~G~iCl~il~~~W~p-~~~i~~vL~~i~~ll~~  114 (399)
T 4ddg_A           75 --IYHPNINSNGSISLDILRSQWSP-ALTISKVLLSICSLLCD  114 (399)
T ss_dssp             --CCCTTBCTTCBBCCGGGTTSCCT-TCCHHHHHHHHHHHHHS
T ss_pred             --ccccccCCCCeEeCcccccCCCc-cccHHHHHHHHHHHHcC
Confidence              249999999999999995 8987 78999999999998875

>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A

Probab=97.72  E-value=5.7e-05  Score=65.66  Aligned_cols=71  Identities=11%  Similarity=0.139  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489          230 VFKRNAVNKLVEMVHADITGMRKAREVEV-EGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS  300 (304)
Q Consensus       230 ~~r~s~lsal~dkl~~el~~l~~t~~ae~-e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~  300 (304)
                      +.+.+.|+++.++.+.++.+...+.++++ .++.+.+.+|+.+.++|+.+++.|++++++|+++++.+..+.
T Consensus        15 ~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~   86 (174)
T 2p22_A           15 QNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANR   86 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45889999999999988888888888888 777889999999999999999999999999999999887743

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=97.59  E-value=3.5e-05  Score=66.61  Aligned_cols=59  Identities=20%  Similarity=0.372  Sum_probs=46.9

Q ss_pred             cccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceecccccc--ccC--CCCCHHHHH
Q 039489           86 VTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQN--WIY--PSSNLVDLV  149 (304)
Q Consensus        86 ~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~~--W~~--~~s~L~~Lv  149 (304)
                      ..|.+.+.|-||++||..||.|.+ ++.++.    |++|+.+|+|||..|.+  |..  +..++..++
T Consensus        81 ~~y~F~L~~~fPe~YP~~PPeV~F-~~~~~~----hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL  143 (172)
T 2z6o_A           81 LKYEFDIEFDIPITYPTTAPEIAV-PELDGK----TAKMYRGGKICLTDHFKPLWARNVPKFGLAHLM  143 (172)
T ss_dssp             EEEEEEEEEECCTTTTTSCCCCBC-GGGTTT----CSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHH
T ss_pred             cceEEEEEEECCCCCCCCCCeeee-CCCCCC----CCCCCCCCcEechhhccccccccCCccCHHHHH
Confidence            467888899999999999999988 454443    89999999999999943  662  366766555

>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A

Probab=97.24  E-value=0.00047  Score=59.89  Aligned_cols=68  Identities=13%  Similarity=0.251  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 039489          236 VNKLVEMVHADITGMRKARE-VEVEGLFSTQALL----RRREEEIDRGLKELQDEREGLEQQLQIVLMNSDIL  303 (304)
Q Consensus       236 lsal~dkl~~el~~l~~t~~-ae~e~l~~~q~eL----~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~  303 (304)
                      -+++.++|+.-|.++.++.. .++|.++..|.+|    +++++.++++.++|++++++||++.+.|.+++++|
T Consensus        10 ~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l   82 (174)
T 2p22_A           10 HHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVL   82 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566778888888888665 8888998887655    99999999999999999999999999999999876

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=96.16  E-value=0.0014  Score=55.79  Aligned_cols=58  Identities=16%  Similarity=0.273  Sum_probs=44.9

Q ss_pred             EecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccccccC
Q 039489           76 DGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIY  140 (304)
Q Consensus        76 ~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~~W~~  140 (304)
                      .|.-=..|+-.+|-+-+.|-+|.+||..||.|.+ |+.++    .|+.+..+|+|||..+  |.+
T Consensus        73 ~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~F-p~ldg----kt~kmYr~GkICLdIh--wkP  130 (168)
T 3kpa_A           73 YGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIAL-PELEG----KTVKMYRGGKICMTTH--FFP  130 (168)
T ss_dssp             EEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC-GGGTT----TCSSEETTTEECCCTT--HHH
T ss_pred             cCccceeeccceeEEEEEEeCCccCCCCCCEeec-ccccC----cCccccCCCcEEeccc--cch
Confidence            3433333455589999999999999999999988 56543    3889999999999885  763

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=95.82  E-value=0.097  Score=39.86  Aligned_cols=36  Identities=22%  Similarity=0.439  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489          266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD  301 (304)
Q Consensus       266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~  301 (304)
                      ++++.+++.+++.++.|++|...++.+|..|..+.|
T Consensus        44 ~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e   79 (81)
T 2jee_A           44 QNAQHQREELERENNHLKEQQNGWQERLQALLGRME   79 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            677777888999999999999999999999988765

>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*

Probab=95.70  E-value=0.073  Score=39.50  Aligned_cols=65  Identities=17%  Similarity=0.228  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489          237 NKLVEMVHADITGMRKAREVEVEGLFSTQ-ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD  301 (304)
Q Consensus       237 sal~dkl~~el~~l~~t~~ae~e~l~~~q-~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~  301 (304)
                      +.+...+|+.-+++-....+|+|..++.+ ++|...-..=.+.++..+.|..||.+.|+.|....+
T Consensus         8 ~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~   73 (77)
T 3trt_A            8 TAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVD   73 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556777888888888888888888887 677777666666677777777777777777765543

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=92.77  E-value=1.7  Score=35.34  Aligned_cols=61  Identities=11%  Similarity=0.172  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          236 VNKLVEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIV  296 (304)
Q Consensus       236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l  296 (304)
                      +.+...++..+...|..+.++|.+.+...+   ..|..++.+|+..|..|....++.+.....|
T Consensus        39 le~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L  102 (129)
T 2fxo_A           39 LEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAEL  102 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444455555555555555554444   4555555555666655555555544444444

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=92.57  E-value=1  Score=37.36  Aligned_cols=25  Identities=16%  Similarity=0.243  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489          274 EIDRGLKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       274 ~l~~~I~~L~~E~~eLe~~l~~l~~  298 (304)
                      .+++.+++|++|..+|++++.+|..
T Consensus       107 ~~~~e~~~l~~~~~~l~~~~~~le~  131 (138)
T 3hnw_A          107 SSAKEIKELKSEINKYQKNIVKLET  131 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666666666666666643

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=92.44  E-value=0.98  Score=43.51  Aligned_cols=60  Identities=13%  Similarity=0.156  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489          240 VEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN  299 (304)
Q Consensus       240 ~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~  299 (304)
                      .+++|..+..++++...-..+...+|+.|++...+-++-|++|+.|..+|+..|+.++..
T Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (471)
T 3mq9_A          406 LTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAE  465 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444444455667777776666677777777777777777766543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.17  E-value=0.87  Score=44.95  Aligned_cols=22  Identities=18%  Similarity=0.140  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Q 039489          278 GLKELQDEREGLEQQLQIVLMN  299 (304)
Q Consensus       278 ~I~~L~~E~~eLe~~l~~l~~~  299 (304)
                      .+.+|++|.+.+++.+..++.+
T Consensus       559 ~~~~l~~e~~~~~~~~~~l~~~  580 (597)
T 3oja_B          559 KQAELRQETSLKRQKVKQLEAK  580 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444443

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=91.86  E-value=2.5  Score=34.16  Aligned_cols=54  Identities=9%  Similarity=0.131  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489          248 TGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD  301 (304)
Q Consensus       248 ~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~  301 (304)
                      .+-+.|...++++|.+.++.-.++-++|+..|+.|.++..+.+..++.|+..+.
T Consensus        49 aTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~  102 (121)
T 3mq7_A           49 ATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQ  102 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence            344556666777777655443444556666666666666666666666655443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=91.55  E-value=1.1  Score=48.53  Aligned_cols=36  Identities=11%  Similarity=0.152  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489          262 FSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL  297 (304)
Q Consensus       262 ~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~  297 (304)
                      ..+++++.+-+++|++.|..|++|++.|++++..|+
T Consensus      1008 ~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A         1008 KTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444555555556666666665555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.49  E-value=1.7  Score=42.85  Aligned_cols=9  Identities=44%  Similarity=0.534  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q 039489          284 DEREGLEQQ  292 (304)
Q Consensus       284 ~E~~eLe~~  292 (304)
                      +|+++||+.
T Consensus       544 ~~~~~le~~  552 (597)
T 3oja_B          544 QENIALEKQ  552 (597)
T ss_dssp             HHHHHHHHH
T ss_pred             hhhHHHHHH
Confidence            333333333

>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=90.18  E-value=1.3  Score=29.69  Aligned_cols=37  Identities=24%  Similarity=0.405  Sum_probs=29.7

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          258 VEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQ  294 (304)
Q Consensus       258 ~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~  294 (304)
                      +..|.+-.-+|++.++.|+++|..|++|.+.||.++.
T Consensus        12 iarlkkdnlqlerdeqnlekiianlrdeiarleneva   48 (52)
T 3he5_B           12 IARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVA   48 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence            3344555567888899999999999999999998764

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=89.74  E-value=1.4  Score=35.32  Aligned_cols=64  Identities=11%  Similarity=0.214  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          231 FKRNAVNKLVEMVHADITGMRKAREVEVEG----LFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQ  294 (304)
Q Consensus       231 ~r~s~lsal~dkl~~el~~l~~t~~ae~e~----l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~  294 (304)
                      ++-+-|....++|+.|+++.+...+.....    ...+|   +.|+..++.+..-|++|+.+.+.||++--
T Consensus         3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R   73 (111)
T 2v66_B            3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR   73 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence            566677777888888887777755554332    33344   66777777888888888888888877643

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=89.46  E-value=6.1  Score=31.57  Aligned_cols=30  Identities=13%  Similarity=0.203  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489          272 EEEIDRGLKELQDEREGLEQQLQIVLMNSD  301 (304)
Q Consensus       272 ~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~  301 (304)
                      ...|++-|..|+++++.|...|..|+.++|
T Consensus        37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~ND   66 (111)
T 2v66_B           37 VSVLEDDLSQTRAIKEQLHKYVRELEQAND   66 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            333444444444444444444444443333

>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}

Probab=89.35  E-value=0.53  Score=31.59  Aligned_cols=33  Identities=18%  Similarity=0.287  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          263 STQALLRRREEEIDRGLKELQDEREGLEQQLQI  295 (304)
Q Consensus       263 ~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~  295 (304)
                      .+..+|..|++.|++-|..|+.|.+.|.+.++.
T Consensus         9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a   41 (43)
T 2pnv_A            9 DMISDLNERSEDFEKRIVTLETKLETLIGSIHA   41 (43)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            466899999999999999999999999888864

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=89.08  E-value=3.8  Score=33.83  Aligned_cols=56  Identities=18%  Similarity=0.152  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          240 VEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQI  295 (304)
Q Consensus       240 ~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~  295 (304)
                      .+.+..+++++.+...++.+.+.+++   .++++.-+++.+-+..|+.+..+||..+..
T Consensus        77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~  135 (138)
T 3hnw_A           77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND  135 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44556666666666666666666666   555666667777777777777777766643

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=88.37  E-value=0.45  Score=35.73  Aligned_cols=70  Identities=14%  Similarity=0.279  Sum_probs=43.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          227 QTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIV  296 (304)
Q Consensus       227 a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l  296 (304)
                      ..|-.|+..|+..++.|+.-+=......-.-.+-|...-   ..|.++.+.++..+++|+++.++|+..|+.|
T Consensus         8 ~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L   80 (83)
T 1nkp_B            8 ALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL   80 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            356677777888888777665433211111111122211   6667777777888888888888888888654

>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}

Probab=88.34  E-value=4  Score=29.93  Aligned_cols=55  Identities=16%  Similarity=0.143  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489          245 ADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN  299 (304)
Q Consensus       245 ~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~  299 (304)
                      .||....+..++|++.|..+=..|+..=.+..++=++|+++...++..+..|..+
T Consensus         6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~   60 (74)
T 2q6q_A            6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKK   60 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Confidence            3666777788999999999999999999999999999999999999998888643

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=88.04  E-value=3  Score=36.39  Aligned_cols=12  Identities=17%  Similarity=0.254  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHHh
Q 039489          286 REGLEQQLQIVL  297 (304)
Q Consensus       286 ~~eLe~~l~~l~  297 (304)
                      +..|...|-.|.
T Consensus       104 ~~~l~~~ireLE  115 (189)
T 2v71_A          104 KEQLHKYVRELE  115 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=88.03  E-value=5.1  Score=32.46  Aligned_cols=54  Identities=7%  Similarity=0.104  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          237 NKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLE  290 (304)
Q Consensus       237 sal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe  290 (304)
                      +.....|+.+++.++.+...+-..+..++......-..++..|..|+.+...+.
T Consensus        44 rr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r   97 (131)
T 3tnu_A           44 RRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLR   97 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556777777777777777667766665555555555555555555544433

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=87.65  E-value=6.4  Score=31.75  Aligned_cols=53  Identities=13%  Similarity=0.193  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          237 NKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGL  289 (304)
Q Consensus       237 sal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eL  289 (304)
                      +.....|+.+++.++.+...+-..+..++......-..++..|..|+.+...+
T Consensus        42 rr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~   94 (129)
T 3tnu_B           42 NRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKA   94 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            34456777788888887777777777766555555555555555555444433

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=87.42  E-value=3.4  Score=31.22  Aligned_cols=8  Identities=25%  Similarity=0.185  Sum_probs=3.3

Q ss_pred             HHHHHHHH
Q 039489          234 NAVNKLVE  241 (304)
Q Consensus       234 s~lsal~d  241 (304)
                      ++.+++..
T Consensus        14 eLQSALea   21 (81)
T 1wt6_A           14 ELQEALEE   21 (81)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444333

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=87.33  E-value=7.4  Score=30.14  Aligned_cols=36  Identities=19%  Similarity=0.331  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489          264 TQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN  299 (304)
Q Consensus       264 ~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~  299 (304)
                      +...|+++.+.+++.|++|+.+.+.+++.+..+..+
T Consensus        71 a~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~  106 (117)
T 2zqm_A           71 AVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQ  106 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            447888888888888888888888888888777653

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=86.88  E-value=6.6  Score=31.64  Aligned_cols=21  Identities=29%  Similarity=0.406  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 039489          276 DRGLKELQDEREGLEQQLQIV  296 (304)
Q Consensus       276 ~~~I~~L~~E~~eLe~~l~~l  296 (304)
                      .+-|++|++|.+.|++.|++.
T Consensus        70 q~~vqeLqgEI~~Lnq~Lq~a   90 (121)
T 3mq7_A           70 QKKVEELEGEITTLNHKLQDA   90 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444433

>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A

Probab=86.87  E-value=3.4  Score=33.78  Aligned_cols=58  Identities=19%  Similarity=0.254  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489          242 MVHADITGMRKAREVEVEGLFST--------QALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN  299 (304)
Q Consensus       242 kl~~el~~l~~t~~ae~e~l~~~--------q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~  299 (304)
                      .++.|+++..++.+.......++        ..|+..-..+|+..|+.++...++|++.|..++.+
T Consensus        31 ~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~n   96 (130)
T 4dnd_A           31 VVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEAN   96 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34444444444444444443321        24777778888888888888888888888877654

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=86.75  E-value=3.3  Score=32.57  Aligned_cols=61  Identities=18%  Similarity=0.164  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----H--------------------HHHHHHHHHHHHHHHHHHHHHH
Q 039489          238 KLVEMVHADITGMRKAREVEVEGLFSTQALLRR----R--------------------EEEIDRGLKELQDEREGLEQQL  293 (304)
Q Consensus       238 al~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~----~--------------------~~~l~~~I~~L~~E~~eLe~~l  293 (304)
                      +-.++++.++++|....+.+.+.+..++.+|.+    |                    .+..++.++.|+.|.+.|...+
T Consensus        12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v   91 (100)
T 1go4_E           12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL   91 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356777888888888888888877777777766    1                    1245667777777777777766


Q ss_pred             HHHhh
Q 039489          294 QIVLM  298 (304)
Q Consensus       294 ~~l~~  298 (304)
                      ..|..
T Consensus        92 ~~lEe   96 (100)
T 1go4_E           92 RAMER   96 (100)
T ss_dssp             TTCC-
T ss_pred             HHHhc
Confidence            65543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=86.63  E-value=4.1  Score=39.30  Aligned_cols=49  Identities=8%  Similarity=0.026  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQ  294 (304)
Q Consensus       246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~  294 (304)
                      +++..+.....+++...+..+.|+++.+++++-+++++.+.++....++
T Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (487)
T 3oja_A          425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQ  473 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence            3333444444444444444445555555555555444444444444333

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=86.54  E-value=6.1  Score=31.65  Aligned_cols=56  Identities=9%  Similarity=0.109  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          241 EMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV  296 (304)
Q Consensus       241 dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l  296 (304)
                      ++|+.++..++++.+.+++....++..+.+-.++-.+-|..|....+.-|..|..|
T Consensus         9 ~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~L   64 (112)
T 1x79_B            9 KKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEEL   64 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444444444444444444333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=86.36  E-value=7.3  Score=34.82  Aligned_cols=36  Identities=8%  Similarity=0.197  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          261 LFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV  296 (304)
Q Consensus       261 l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l  296 (304)
                      +..++++|...+..++..+.+++.+.++|......+
T Consensus       134 l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l  169 (256)
T 3na7_A          134 MLELEKLALELESLVENEVKNIKETQQIIFKKKEDL  169 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444555555544444444443

>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}

Probab=85.99  E-value=7  Score=28.00  Aligned_cols=61  Identities=16%  Similarity=0.119  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL  293 (304)
Q Consensus       232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l  293 (304)
                      |..+|.++..++.. ++.+......+++.+...=+.+.++...-.+.|+.|+.+..++|+.|
T Consensus         4 ~~~~~~~le~kl~~-lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~~l   64 (65)
T 3m0d_C            4 KEKLLAELEGKLRV-FENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQTL   64 (65)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Confidence            44566666555433 66666654445555444444443444444777888888888887644

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=85.62  E-value=4.3  Score=28.96  Aligned_cols=44  Identities=20%  Similarity=0.315  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGL  289 (304)
Q Consensus       246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eL  289 (304)
                      |++....+.+|-+..|.+....|.++-..+.+.|.+|+.|...|
T Consensus        17 evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L   60 (63)
T 2w6a_A           17 ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence            34444555666666666666666666566666777777766655

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=85.58  E-value=10  Score=28.88  Aligned_cols=36  Identities=19%  Similarity=0.253  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489          264 TQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN  299 (304)
Q Consensus       264 ~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~  299 (304)
                      +...|+++.+.+++.|++|+.+.+.+++.+..+..+
T Consensus        66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~  101 (107)
T 1fxk_A           66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQVN  101 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            458899999999999999999999999999888754

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=85.52  E-value=7.5  Score=30.19  Aligned_cols=11  Identities=27%  Similarity=0.546  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHH
Q 039489          286 REGLEQQLQIV  296 (304)
Q Consensus       286 ~~eLe~~l~~l  296 (304)
                      .+.|.++|+-|
T Consensus        88 v~~L~Rriqll   98 (101)
T 3u1c_A           88 VASLNRRIQLV   98 (101)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33344444433

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=85.23  E-value=3.3  Score=44.84  Aligned_cols=13  Identities=15%  Similarity=0.174  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHHHH
Q 039489          284 DEREGLEQQLQIV  296 (304)
Q Consensus       284 ~E~~eLe~~l~~l  296 (304)
                      ++...|+++.++|
T Consensus      1023 ~kv~~L~~e~~~L 1035 (1080)
T 2dfs_A         1023 QLVSELKEQNTLL 1035 (1080)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=85.08  E-value=6.4  Score=30.76  Aligned_cols=59  Identities=14%  Similarity=0.077  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Q 039489          239 LVEMVHADITGMRKAREVEVEGLFSTQALLRRREE----EIDRGLKELQDEREGLEQQLQIVL  297 (304)
Q Consensus       239 l~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~----~l~~~I~~L~~E~~eLe~~l~~l~  297 (304)
                      -..+|+.++.+-+..+.+--..+.+++.||+.=..    +.++||..-+.+...++.....|.
T Consensus        27 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~   89 (97)
T 2eqb_B           27 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLT   89 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444445555544433    556777777777777777766664

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=84.79  E-value=5.8  Score=35.47  Aligned_cols=47  Identities=11%  Similarity=0.018  Sum_probs=23.1

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489          253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN  299 (304)
Q Consensus       253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~  299 (304)
                      ..++..+.+..+++++...+.+++....+++.+.++++..+..+..+
T Consensus       119 ~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~  165 (256)
T 3na7_A          119 EIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKK  165 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444455555555555555555555555555555433

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=84.15  E-value=1.3  Score=40.33  Aligned_cols=41  Identities=17%  Similarity=0.179  Sum_probs=31.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489          258 VEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       258 ~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~  298 (304)
                      ++.+.+.-..|..+.++|...++++++|...|+++|+.|.+
T Consensus        56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s   96 (251)
T 3m9b_A           56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ   96 (251)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44455555777777788888999999999999999988853

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=84.06  E-value=11  Score=28.24  Aligned_cols=23  Identities=4%  Similarity=-0.005  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHH
Q 039489          243 VHADITGMRKAREVEVEGLFSTQ  265 (304)
Q Consensus       243 l~~el~~l~~t~~ae~e~l~~~q  265 (304)
                      ..++++.|.....++.++..++.
T Consensus         7 mgkevEnLi~EN~eLl~TKNaLn   29 (77)
T 2w83_C            7 MGREVENLILENTQLLETKNALN   29 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666666655554

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=83.40  E-value=3.7  Score=39.70  Aligned_cols=58  Identities=16%  Similarity=0.137  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039489          241 EMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDI  302 (304)
Q Consensus       241 dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~  302 (304)
                      +.|..|+++++++.+++.+...+++++++..+++|    .+.+.++..|...++.+..+..|
T Consensus         6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l----~~~~~~rr~l~n~~~~l~gnIrV   63 (412)
T 3u06_A            6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL----FQSNMERKELHNTVMDLRDNIRV   63 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCEEE
Confidence            56778888888888888888888888887777665    44678888899999998877654

>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1

Probab=83.36  E-value=7.3  Score=30.36  Aligned_cols=43  Identities=12%  Similarity=0.047  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 039489          234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEID  276 (304)
Q Consensus       234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~  276 (304)
                      .+|...+|..+.+|++-.++.+.+++.|..++.+++.=+++..
T Consensus        39 arLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~   81 (96)
T 1t3j_A           39 ARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAV   81 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            4455555555555555555555555555555544444444333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=83.35  E-value=11  Score=29.17  Aligned_cols=12  Identities=33%  Similarity=0.601  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHH
Q 039489          285 EREGLEQQLQIV  296 (304)
Q Consensus       285 E~~eLe~~l~~l  296 (304)
                      +.+.|.++|+-|
T Consensus        87 evasLnRriqll   98 (101)
T 3u59_A           87 EVASLNRRIQLV   98 (101)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            334444444443

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=83.23  E-value=11  Score=28.04  Aligned_cols=11  Identities=18%  Similarity=0.184  Sum_probs=4.1

Q ss_pred             HHHHHHHHHHH
Q 039489          242 MVHADITGMRK  252 (304)
Q Consensus       242 kl~~el~~l~~  252 (304)
                      .++.+.+....
T Consensus        10 ~lk~e~d~a~~   20 (81)
T 1ic2_A           10 MLKLDKENALD   20 (81)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=83.23  E-value=8.3  Score=29.15  Aligned_cols=61  Identities=18%  Similarity=0.187  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489          238 KLVEMVHADITGMRKARE---VEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       238 al~dkl~~el~~l~~t~~---ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~  298 (304)
                      +++++|.++++.+.++-.   -|++.|+.-...|.+..+.+..+.+.|++|.+.|......-.+
T Consensus         6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~   69 (81)
T 2jee_A            6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE   69 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            455566666555555433   3555565555666666666666666666666666666554433

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=83.13  E-value=2.9  Score=31.03  Aligned_cols=20  Identities=20%  Similarity=0.308  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 039489          279 LKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       279 I~~L~~E~~eLe~~l~~l~~  298 (304)
                      |++|+.+..+.|..|+.|..
T Consensus        42 I~eLEk~L~ekd~eI~~Lqs   61 (72)
T 3nmd_A           42 IDELELELDQKDELIQMLQN   61 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444433

>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}

Probab=82.45  E-value=10  Score=28.22  Aligned_cols=50  Identities=18%  Similarity=0.183  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          237 NKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDER  286 (304)
Q Consensus       237 sal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~  286 (304)
                      -+.+++|..-|+.|.....-++....+.|..|++|-.+|+..+..+..+.
T Consensus         6 EEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~~~~   55 (74)
T 3swf_A            6 EEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPLIDTE   55 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence            34455566666666666666677778899999999999988887755443

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=82.12  E-value=11  Score=35.99  Aligned_cols=10  Identities=30%  Similarity=0.378  Sum_probs=4.0

Q ss_pred             HHHHHHHHHH
Q 039489          286 REGLEQQLQI  295 (304)
Q Consensus       286 ~~eLe~~l~~  295 (304)
                      .+|||.+|..
T Consensus       445 ~~~~~~~~~~  454 (471)
T 3mq9_A          445 VEELEGEITT  454 (471)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3344444433

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=81.82  E-value=2.8  Score=32.54  Aligned_cols=59  Identities=24%  Similarity=0.308  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489          239 LVEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIVL  297 (304)
Q Consensus       239 l~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~  297 (304)
                      -..++..+|+++-+...+.-..+..++   ..|....++.=+.-+.++.+.-+++..+..+.
T Consensus        19 eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~   80 (96)
T 3q8t_A           19 EEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVE   80 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444443333333333333   23333333333444444444444444444443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=81.77  E-value=18  Score=31.43  Aligned_cols=68  Identities=10%  Similarity=0.189  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          229 EVFKRNAVNKLVEMVHADITGMRKAREVEVEG----LFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIV  296 (304)
Q Consensus       229 E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~----l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l  296 (304)
                      -.++-+-+.....+++.+++..+...+.....    +.++|   +.|+...+.+..-|++|+...+.||++.-..
T Consensus        54 ~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~  128 (189)
T 2v71_A           54 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT  128 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34555666666777777777766555444333    33333   5666666677777777777777777665443

>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}

Probab=81.44  E-value=17  Score=28.25  Aligned_cols=47  Identities=21%  Similarity=0.169  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489          249 GMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN  299 (304)
Q Consensus       249 ~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~  299 (304)
                      .-+.|...++++|.+-++.    ..+-.+-+++|++|.+.|++.|++....
T Consensus        43 TCNqTV~tL~~SL~kekaq----~q~qq~~v~elqgEI~~Lnq~Lqda~~~   89 (99)
T 3ni0_A           43 SCNLTVVTLQESLEKKVSQ----ALEQQARIKELENEVTKLNQELENLRIQ   89 (99)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555555444322    2222345788888888888888776543

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}

Probab=81.29  E-value=11  Score=37.48  Aligned_cols=32  Identities=31%  Similarity=0.361  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489          266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVL  297 (304)
Q Consensus       266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~  297 (304)
                      ++|+++..+|++.|..|+.+..++++.+..+.
T Consensus       119 ~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l  150 (501)
T 1wle_A          119 QSLRARGREIRKQLTLLYPKEAQLEEQFYLRA  150 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36666677777777778878778777776654

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=81.03  E-value=14  Score=29.37  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccc
Q 039489          280 KELQDEREGLEQQLQIVLMNSDI  302 (304)
Q Consensus       280 ~~L~~E~~eLe~~l~~l~~~~~~  302 (304)
                      +++..|+++|+..+..|.....-
T Consensus        86 Ekl~~eKe~L~~ql~~Lq~q~~~  108 (110)
T 2v4h_A           86 EKLVEKKEYLQEQLEQLQREFNK  108 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHh
Confidence            45777788888877777665443

>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}

Probab=80.81  E-value=12  Score=29.11  Aligned_cols=69  Identities=16%  Similarity=0.036  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489          230 VFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ--------ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       230 ~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q--------~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~  298 (304)
                      .-|++.|....+.++.+++...+.+++.+.-+..-.        ..+...-.++...|+.|+.+...++.-|..+..
T Consensus        14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~   90 (98)
T 2ke4_A           14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAES   90 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456667777777788888777766544443332211        233444456666777777777776666666543

>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}

Probab=80.73  E-value=18  Score=28.22  Aligned_cols=38  Identities=21%  Similarity=0.330  Sum_probs=26.1

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          256 VEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL  293 (304)
Q Consensus       256 ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l  293 (304)
                      +.-++|++..++|...+.+++++.++|++-.+..+..+
T Consensus        52 anTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLl   89 (114)
T 2xzr_A           52 ANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEIL   89 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666778888888888888887776555444433

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=80.59  E-value=19  Score=28.32  Aligned_cols=45  Identities=11%  Similarity=0.087  Sum_probs=24.4

Q ss_pred             HHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489          254 REVEVEGLFSTQALLRRREE---EIDRGLKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       254 ~~ae~e~l~~~q~eL~~~~~---~l~~~I~~L~~E~~eLe~~l~~l~~  298 (304)
                      .++.++.+-+++.+|..+.+   .+++.++.++.+..+|...+..+..
T Consensus        49 ~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~   96 (107)
T 2no2_A           49 TQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEK   96 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555566666544   3445555666666666666555543

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A

Probab=80.41  E-value=11  Score=36.91  Aligned_cols=33  Identities=27%  Similarity=0.390  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489          266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~  298 (304)
                      ++|+++..+|++.|+.|+.+..++++.+..+..
T Consensus        72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (455)
T 2dq0_A           72 DELLAKSREIVKRIGELENEVEELKKKIDYYLW  104 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577788888888888888888888888887654

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=80.03  E-value=18  Score=27.75  Aligned_cols=33  Identities=12%  Similarity=0.205  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489          266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~  298 (304)
                      .+|+.+...|...++.|.+|.+++.+++..+..
T Consensus        51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~   83 (90)
T 2wt7_B           51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKV   83 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	304
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	5e-38
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	2e-35

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (326), Expect = 5e-38
 Identities = 46/127 (36%), Positives = 78/127 (61%), Gaps = 1/127 (0%)

Query: 38  KWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLM 97
           + L  +  + +I+ +  L P   ++  NDG S  L+   GT+P+P++G TYNIP+ +WL+
Sbjct: 16  RDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLL 75

Query: 98  ESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFS 157
           ++YP +PP  +V PT  M I +   HV  +G + +PYL  W +P S+L+ L++ +   F 
Sbjct: 76  DTYPYNPPICFVKPTSSMTI-KTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFG 134

Query: 158 REPPLYS 164
            EPP++S
Sbjct: 135 DEPPVFS 141

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  123 bits (309), Expect = 2e-35
 Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 14/156 (8%)

Query: 12  PQQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVN 71
           P+ +  +L  V+         Y +          L L+  F SL P+T  FTH+DG    
Sbjct: 3   PEAVVNWLFKVIQPI------YND--GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQL 54

Query: 72  LLQADGTVPMPFQGVT-YNIPVIIWLMESYPRHPPCVYVNPTRDMIIK-----RPHPHVT 125
           LL   GT+     G + ++IPVI+W+   YP  PP + +N     +           ++ 
Sbjct: 55  LLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYID 114

Query: 126 PSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPP 161
            +G +++P L  W   + NL+ +V+EL +     P 
Sbjct: 115 SNGWIALPILHCWDPAAMNLIMVVQELMSLLHEPPQ 150

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	304
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	100.0
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	100.0
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	98.99
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	98.78
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.73
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.72
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	98.7
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.69
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.68
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.68
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	98.68
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.67
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.67
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	98.65
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	98.65
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	98.62
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	98.61
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	98.6
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	98.59
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.57
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.56
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	98.53
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.48
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	98.46
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.41
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	98.36
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	98.3
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	98.23
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.19
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.15
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	97.89
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	85.65
d1k4ta1	72	Eukaryotic DNA topoisomerase I, dispensable insert	85.09
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	83.16
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	82.4

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-43  Score=299.92  Aligned_cols=142  Identities=29%  Similarity=0.529  Sum_probs=124.6

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCchhhHHHHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcc-cc
Q 039489           11 NPQQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVT-YN   89 (304)
Q Consensus        11 ~~~~~~~wL~~vl~~~~~~a~~Y~~~~k~~v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~-yn   89 (304)
                      +|++|++||++||++      .|.+  +..+++|+.++|+.|++|+|++++|+|+||++++||||+|||||.|+|++ ||
T Consensus         2 ~~~~~~~wL~~vlq~------~Y~~--~~~v~~dv~~~l~~y~~L~p~~~~~~~~dg~~~~Ll~l~Gtipi~y~g~~~y~   73 (152)
T d1uzxa_           2 VPEAVVNWLFKVIQP------IYND--GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHS   73 (152)
T ss_dssp             CCHHHHHHHHHHHHH------HCTT--HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEECCC-------C
T ss_pred             ccHHHHHHHHHHhhh------hcCC--cchHHHHHHHHHHhCCCCCcccceeecCCCCcceEEEEEcccccccCCCceeE
Confidence            789999999999997      5876  34589999999999999999999999999999999999999999999996 99


Q ss_pred             eeEEEeecccCCCCCCeEEEecCC------CceecCCCCcccCCCceeccccccccCCCCCHHHHHHHHHHHhccCCC
Q 039489           90 IPVIIWLMESYPRHPPCVYVNPTR------DMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPP  161 (304)
Q Consensus        90 IPi~Iwlp~~YP~~pPivyV~pt~------~m~I~~~~~~Vd~~G~v~lpyL~~W~~~~s~L~~Lv~~l~~~F~~~pP  161 (304)
                      |||+||||++||+.||+|||+++.      +|.| +.|+|||++|+||+|||++|..++|+|++||++|+.+|+++|+
T Consensus        74 ipi~I~lP~~YP~~pP~v~~~~~~~~~~~~~~~i-~~hp~Vd~~G~V~lp~L~~W~~~~s~L~~ll~~l~~~f~~~P~  150 (152)
T d1uzxa_          74 IPVIMWVPSMYPVKPPFISINLENFDMNTISSSL-PIQEYIDSNGWIALPILHCWDPAAMNLIMVVQELMSLLHEPPQ  150 (152)
T ss_dssp             EEEEEECCTTTTTSCCEEEECCTTCCSCC----C-GGGGGBCTTSCBCCHHHHSCCTTTCCHHHHHHHHHTGGGSCCC
T ss_pred             EEEEEEcCCCCCCCCCEEEEecCcccccCCCccc-ccCCCCCCCCcEehHHhcCCCCccCcHHHHHHHHHHHhcCCCC
Confidence            999999999999999999998754      5666 5599999999999999999999899999999999999998765

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-39  Score=270.90  Aligned_cols=139  Identities=35%  Similarity=0.786  Sum_probs=132.0

Q ss_pred             HHHHHHHhcCCCCCCCCCCchhhHHHHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEe
Q 039489           16 QQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIW   95 (304)
Q Consensus        16 ~~wL~~vl~~~~~~a~~Y~~~~k~~v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iw   95 (304)
                      ..||.++|+       +|.+  +.++++|+..+++.|++|+|++++|+++||..+.||||+|++|+.|+|.+|+|||.||
T Consensus         3 e~~l~~~l~-------~Y~~--~~~~~~d~~~~l~~~~~l~p~~~~f~~~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~   73 (141)
T d1s1qa_           3 ESQLKKMVS-------KYKY--RDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLW   73 (141)
T ss_dssp             HHHHHHHTT-------TCTT--HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             HHHHHHHHH-------ccCc--hhhHHHHHHHHHHhCCCCCCccceEEeCCCCceEEEEEECCCCcccCCCEEEEEEEEE
Confidence            478999998       4776  4458899999999999999999999999999999999999999999999999999999


Q ss_pred             ecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccccccCCCCCHHHHHHHHHHHhccCCCCCC
Q 039489           96 LMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYS  164 (304)
Q Consensus        96 lp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~~W~~~~s~L~~Lv~~l~~~F~~~pPl~~  164 (304)
                      ||++||++||+|||.||.+|.| +.|++||.+|+||+|||++|..+.++|++|++.|+.+|+++||||+
T Consensus        74 ~p~~YP~~pP~v~~~pt~~~~~-~~h~~V~~~G~V~lp~L~~W~~~~s~L~~ll~~L~~~f~~e~Pl~s  141 (141)
T d1s1qa_          74 LLDTYPYNPPICFVKPTSSMTI-KTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFS  141 (141)
T ss_dssp             ECTTTTSSCCEEEECCCTTCEE-CCSSSBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHHHSCSEEC
T ss_pred             CCccCCCCCCEEEEecCCCccc-cCCCeECCCCCCcchhhcCCCcccccHHHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999999999 5699999999999999999998899999999999999999999986

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2e-09  Score=85.68  Aligned_cols=108  Identities=17%  Similarity=0.369  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHhCC-CCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecC
Q 039489           41 IRQHLLTLISTFP-SLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR  119 (304)
Q Consensus        41 v~~dv~~vl~~yp-~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~  119 (304)
                      +.+|+.++.+.-+ ++....  ...+|.-..--+.+.|.---.|+|..|.+  .|.++++||+.||.|.+. |..   ..
T Consensus         8 L~kEl~~l~~~~~~~~~~~~--~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~F~-t~~---~~   79 (117)
T d2a7la1           8 LQKELLALQNDPPPGMTLNE--KSVQNSITQWIVDMEGAPGTLYEGEKFQL--LFKFSSRYPFDSPQVMFT-GEN---IP   79 (117)
T ss_dssp             HHHHHHHHHHSCCTTCCCCT--TCCCCSCEEEEEEEECCTTSTTTTCEEEE--EEEECTTTTTSCCEEEEE-SSC---CC
T ss_pred             HHHHHHHHhhCCCCCeEEEE--ecCCCCceEEEEEEeCCCCccccCCeeeE--EEecCcccccCCCEEEEe-CCC---cc
Confidence            3588888765422 222111  11112222233456665556799999886  999999999999999875 431   13


Q ss_pred             CCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhc
Q 039489          120 PHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFS  157 (304)
Q Consensus       120 ~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~  157 (304)
                      -|++||.+|+||+..|. +|++ ..+|.+++..+...++
T Consensus        80 ~Hpnv~~~G~iCl~~l~~~Wsp-~~ti~~vl~~i~~lLs  117 (117)
T d2a7la1          80 VHPHVYSNGHICLSILTEDWSP-ALSVQSVCLSIISMLS  117 (117)
T ss_dssp             CBTTBCTTCBBCCGGGTTTCCT-TSCHHHHHHHHHHHTC
T ss_pred             ccccCcCCCeEEeecCcCCCCC-cCcHHHHHHHHHHHhC
Confidence            49999999999999998 6987 8899999999887653

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=98.78  E-value=3.8e-08  Score=77.37  Aligned_cols=106  Identities=21%  Similarity=0.380  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP  120 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~  120 (304)
                      +.+|+..+.+. +.-  ...+...+|.-.+-.+.+.|.---.|+|..|.+  .|-+|++||+.||.|.+. |.   + ..
T Consensus         3 l~kEl~~l~~~-~~~--g~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~F~-t~---~-~~   72 (109)
T d2fo3a1           3 IQKELHNFLNN-PPI--NCTLDVHPNNIRIWIVKYVGLENTIYANEVYKL--KIIFPDDYPLKPPIVYFL-QK---P-PK   72 (109)
T ss_dssp             HHHHHHHHHHS-CCT--TEEEEECTTCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEEC-SS---C-CC
T ss_pred             HHHHHHHHHhC-CCC--CEEEEEcCCcccEEEEEEecCchhhhcCCCceE--EEEeccccCCCCCeEEEE-ec---c-cc
Confidence            45788777554 322  223334445555566777886666799998886  889999999999999774 32   1 24


Q ss_pred             CCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhc
Q 039489          121 HPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFS  157 (304)
Q Consensus       121 ~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~  157 (304)
                      |++|+.+|+||+..|. +|++ ..++..++..++..++
T Consensus        73 hpni~~~G~iCl~il~~~Wsp-~~ti~~vl~~i~~lls  109 (109)
T d2fo3a1          73 HTHVYSNGDICLSLLGDDYNP-SLSISGLVLSIISMLS  109 (109)
T ss_dssp             BTTBCTTSBBCCGGGTTTCCT-TCCHHHHHHHHHHHHC
T ss_pred             CceECCCCeEEeecccCCCCc-cCCHHHHHHHHHHHhC
Confidence            9999999999999998 9986 8899999999988764

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=98.73  E-value=6.2e-08  Score=79.82  Aligned_cols=100  Identities=21%  Similarity=0.394  Sum_probs=75.3

Q ss_pred             HHHHHHHHHh-CCCCccccceeecCCCceeeEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489           42 RQHLLTLIST-FPSLDPKTATFTHNDGRSVNLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI  116 (304)
Q Consensus        42 ~~dv~~vl~~-yp~L~p~~~~ft~~dG~~~~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~  116 (304)
                      .+|+..+.+. -+++.      ...++  .+++...|+|    -..|.|..|.+  .|.|+.+||+.||.|++. |.  +
T Consensus         7 ~~El~~l~~~~~~~i~------~~~~~--~d~~~w~~~i~gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~-t~--i   73 (146)
T d1i7ka_           7 QQELMTLMMSGDKGIS------AFPES--DNLFKWVGTIHGAAGTVYEDLRYKL--SLEFPSGYPYNAPTVKFL-TP--C   73 (146)
T ss_dssp             HHHHHHHHHHCCTTEE------EEEET--TEEEEEEEEEEBCTTSTTBTCEEEE--EEECCTTTTTSCCEEEES-SC--C
T ss_pred             HHHHHHHhhCCCCCEE------EEEcC--CcccEEEEEEecCccccccCCEEEE--EEEecCCCCcCCceeeec-CC--C
Confidence            3788888665 22222      12222  2566766666    33588888866  999999999999999996 43  2


Q ss_pred             ecCCCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489          117 IKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       117 I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                         -|++||.+|+||+..|. +|++ ..+|.+++..+...|.+
T Consensus        74 ---~HPnV~~~G~icl~~l~~~W~p-~~~i~~il~~i~~ll~~  112 (146)
T d1i7ka_          74 ---YHPNVDTQGNISLDILKEKWSA-LYDVRTILLSIQSLLGE  112 (146)
T ss_dssp             ---CSTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             ---CcccCCCCCccccccccccCCC-CcCHHHHHHHHHHHHhC
Confidence               39999999999999888 7775 78899999999999874

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=98.72  E-value=5.8e-08  Score=79.85  Aligned_cols=106  Identities=18%  Similarity=0.260  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHhC-CCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecC
Q 039489           41 IRQHLLTLISTF-PSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR  119 (304)
Q Consensus        41 v~~dv~~vl~~y-p~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~  119 (304)
                      +.+|+..+.+.= .++..    .-.+|.-..--+++.|--.-.|+|..|.+  .|-+|++||..||.|++. |.  +   
T Consensus         7 i~~E~~~l~~~~~~gi~~----~~~~~n~~~w~~~i~gp~~t~y~gg~f~~--~i~~p~~YP~~pP~v~f~-t~--i---   74 (148)
T d1y6la_           7 IQKELAEITLDPPPNCSA----GPKGDNIYEWRSTILGPPGSVYEGGVFFL--DITFSPDYPFKPPKVTFR-TR--I---   74 (148)
T ss_dssp             HHHHHHHHHHSCCTTEEE----EESSSCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC--C---
T ss_pred             HHHHHHHHhhCCCCCEEE----EECCcccceeceEEECCCCCCcCCCeEEE--EEecCcccCCCCcEEEEe-CC--C---
Confidence            458888886642 22332    22334444455667776677899998877  888999999999999996 43  2   


Q ss_pred             CCCcccCCCceeccccccccCCCCCHHHHHHHHHHHhcc
Q 039489          120 PHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       120 ~~~~Vd~~G~v~lpyL~~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      -|++||.+|.||+.+|.+|..+..+|.+++..+..+|.+
T Consensus        75 ~HPnv~~~G~iCl~~l~~~W~p~~~l~~il~~i~~ll~~  113 (148)
T d1y6la_          75 YHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTD  113 (148)
T ss_dssp             CBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred             cCceECCCCeEEEEecCCcCCCcEeHHHHHHHHHHHHhC
Confidence            399999999999999985444588999999999998864

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=98.70  E-value=4.5e-08  Score=81.11  Aligned_cols=106  Identities=19%  Similarity=0.404  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP  120 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~  120 (304)
                      +.+|+..+...-+.   ...++-..|--.+--+.|.|.=-..|+|..|.+  .|.|+++||+.||.|++. |.  +   -
T Consensus        11 l~kEl~~l~~~~~~---gi~v~p~~~dl~~w~~~i~gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~-t~--i---~   79 (151)
T d1zdna1          11 VYKEVTTLTADPPD---GIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRM--KLLLGKDFPASPPKGYFL-TK--I---F   79 (151)
T ss_dssp             HHHHHHHHHHSCCT---TEEEEECSSCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC--C---C
T ss_pred             HHHHHHHHHhCCCC---CeEEEEcCcchheeEEEEecCCCcCccCCceee--eeecCCCCCCCCceeecC-CC--C---C
Confidence            45788887654221   222232222222333345554445699988886  999999999999999996 43  2   3


Q ss_pred             CCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489          121 HPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       121 ~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      |++||.+|+|++.+|. +|++ ..+|..++..+...|.+
T Consensus        80 HPnI~~~G~ic~~~l~~~W~p-~~~l~~il~~i~~~l~~  117 (151)
T d1zdna1          80 HPNVGANGEICVNVLKRDWTA-ELGIRHVLLTIKCLLIH  117 (151)
T ss_dssp             CTTBCTTSBBCHHHHTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             CceecCCCCcccccccccCCc-cccHHHHHHHHHHHHhC
Confidence            9999999999999987 8986 78999999999998864

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=98.69  E-value=8.8e-08  Score=79.08  Aligned_cols=106  Identities=20%  Similarity=0.348  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP  120 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~  120 (304)
                      +.+|+..+.+.=+ ...  .+.-..|--..-...+.|--...|+|..|.+  .|.||++||+.||.|++. |.     .-
T Consensus         7 l~kE~~~l~~~~~-~gi--~~~p~~~~~~~w~~~I~Gp~~TpY~gg~f~~--~i~~p~~YP~~pP~v~f~-t~-----i~   75 (154)
T d1yh2a1           7 LKRELHMLATEPP-PGI--TCWQDKDQMDDLRAQILGGANTPYEKGVFKL--EVIIPERYPFEPPQIRFL-TP-----IY   75 (154)
T ss_dssp             HHHHHHHHHHSCC-TTE--EEEESSSCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC-----CC
T ss_pred             HHHHHHHHHHCcC-CCE--EEEECCcchhhhhceEeCCCCCCCCCCEEEE--EEecCccccCCCceeecc-CC-----CC
Confidence            3467777755422 222  2222333334455556665456799999888  999999999999999995 43     24


Q ss_pred             CCcccCCCceeccccc-----cccCCCCCHHHHHHHHHHHhcc
Q 039489          121 HPHVTPSGLVSIPYLQ-----NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       121 ~~~Vd~~G~v~lpyL~-----~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      |++||.+|+||++.|.     .|++ ..+|..++..|..+|..
T Consensus        76 HPnV~~~g~icl~~l~~~~~~~w~p-~~~i~~il~~i~~ll~~  117 (154)
T d1yh2a1          76 HPNIDSAGRICLDVLKLPPKGAWRP-SLNIATVLTSIQLLMSE  117 (154)
T ss_dssp             BTTBCTTCBBCCGGGSCTTTSCCCT-TSCHHHHHHHHHHHHHS
T ss_pred             cCCcCCCCCcccccccCCccccCCc-cccHHHHHHHHHHHhcc
Confidence            9999999999999996     5775 77899999999998853

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=98.68  E-value=7.1e-08  Score=79.53  Aligned_cols=106  Identities=21%  Similarity=0.315  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHhCC-CCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecC
Q 039489           41 IRQHLLTLISTFP-SLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR  119 (304)
Q Consensus        41 v~~dv~~vl~~yp-~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~  119 (304)
                      +.+|+..+.+.-+ ++..    ...+|.-..--+.|.|.---.|+|..|.+  .|.||.+||+.||.|++. |.     .
T Consensus         7 l~kEl~~l~~~~~~gi~~----~p~~~n~~~w~~~i~gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~-t~-----i   74 (149)
T d1j7db_           7 IIKETQRLLAEPVPGIKA----EPDESNARYFHVVIAGPQDSPFEGGTFKL--ELFLPEEYPMAAPKVRFM-TK-----I   74 (149)
T ss_dssp             HHHHHHHHTTSCCTTEEE----EECSSCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEEC-SC-----C
T ss_pred             HHHHHHHHHhCCCCCEEE----EECCCcccEeeeEEECCcccccCCCEEEE--EEecCCcccCCCceeeec-CC-----C
Confidence            3478888755422 2222    12222222223344453345689998866  899999999999999995 43     2


Q ss_pred             CCCcccCCCceeccccccccCCCCCHHHHHHHHHHHhcc
Q 039489          120 PHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       120 ~~~~Vd~~G~v~lpyL~~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      -|++||.+|+||+..|..|..+..++.+++..|...|..
T Consensus        75 ~HPni~~~G~icl~~l~~~w~p~~~i~~il~~i~~ll~~  113 (149)
T d1j7db_          75 YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA  113 (149)
T ss_dssp             CBTTBCTTCBBCCGGGTTSCCTTSCHHHHHHHHHHHHHS
T ss_pred             CCceECCCCcEehHHhcCCCCCCccHHHHHHHHHHHHhC
Confidence            499999999999999985433488999999999998854

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=98.68  E-value=6.3e-08  Score=79.77  Aligned_cols=105  Identities=20%  Similarity=0.367  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP  120 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~  120 (304)
                      +.+|+..+-+.=+   +.......+|+....-.++.|.---.|+|..|.+  .|.|+++||+.||.|++. |+     .-
T Consensus         5 l~kE~~~l~~~~p---~gi~~~~~~~~~~~~w~~iigp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~-t~-----i~   73 (150)
T d1wzva1           5 VVKELEDLQKKPP---PYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNL--RISFPPEYPFKPPMIKFT-TK-----IY   73 (150)
T ss_dssp             HHHHHHHHHHSCC---TTEEEEEECSSCTTEEEEEECCCSTTGGGEEEEE--EEECCTTTTSSCCEEEES-SC-----CC
T ss_pred             HHHHHHHHHHCCC---CCEEEEecCCCceEEEEEEECCCCCCccCceeeE--EEecCcCCccCCceeecc-CC-----CC
Confidence            4477877755322   1222222334333334455676666799999877  999999999999999995 43     24


Q ss_pred             CCcccCCCceeccccc--cccCCCCCHHHHHHHHHHHhc
Q 039489          121 HPHVTPSGLVSIPYLQ--NWIYPSSNLVDLVRELSACFS  157 (304)
Q Consensus       121 ~~~Vd~~G~v~lpyL~--~W~~~~s~L~~Lv~~l~~~F~  157 (304)
                      |++||.+|.||++.|+  .|.+ ..+|.+++..|..+|.
T Consensus        74 HpnI~~~G~icl~~l~~~~W~p-~~~i~~il~~i~~ll~  111 (150)
T d1wzva1          74 HPNVDENGQICLPIISSENWKP-CTKTCQVLEALNVLVN  111 (150)
T ss_dssp             BTTBCTTCBCCCGGGCTTTCCT-TCCHHHHHHHHHHHHH
T ss_pred             cceECCCCCcccccccccCCCc-hhHHHHHHHHHHHHHh
Confidence            9999999999999996  4664 8899999999999985

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=98.68  E-value=7.6e-08  Score=79.28  Aligned_cols=102  Identities=21%  Similarity=0.377  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI  116 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~  116 (304)
                      +.+|+..+.+.-+ -..    +...+.  .+++...|+|    ...|+|..|.+  .|.+|.+||+.||.|++. |.   
T Consensus         8 l~~E~~~l~~~~~-~gi----~~~p~~--~n~~~w~~~i~gp~~tpy~gg~f~~--~i~~p~~YP~~pP~v~f~-t~---   74 (149)
T d1z3da1           8 LMRDFKKLQEDPP-AGV----SGAPTE--DNILTWEAIIFGPQETPFEDGTFKL--SLEFTEEYPNKPPTVKFI-SK---   74 (149)
T ss_dssp             HHHHHHHHHHSCC-TTE----EEEEET--TEEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC---
T ss_pred             HHHHHHHHhhCCC-CCE----EEEECC--CchhhhceeEECCCCccccCCEEEE--EEEecCcCCCCCcEEEec-Cc---
Confidence            4588888754321 111    111221  2566666665    44677777665  999999999999999995 43   


Q ss_pred             ecCCCCcccCCCceeccccccccCCCCCHHHHHHHHHHHhc
Q 039489          117 IKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFS  157 (304)
Q Consensus       117 I~~~~~~Vd~~G~v~lpyL~~W~~~~s~L~~Lv~~l~~~F~  157 (304)
                        .-|++||.+|.||+..|..|-.+..+|.+++..|..+|.
T Consensus        75 --i~HPnI~~~G~iCl~~l~~~w~p~~~i~~il~~i~~ll~  113 (149)
T d1z3da1          75 --MFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLD  113 (149)
T ss_dssp             --CCCTTBCTTCBBCCGGGTTSCCTTCCHHHHHHHHHHTTS
T ss_pred             --ccceeEcCCCCEEeccccccCCCCCCHHHHHHHHHHHhC
Confidence              249999999999999998554458899999999999774

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=98.67  E-value=4e-08  Score=81.86  Aligned_cols=104  Identities=21%  Similarity=0.431  Sum_probs=75.5

Q ss_pred             HHHHHHHHHhCC-CCccccceeecCCCceeeEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489           42 RQHLLTLISTFP-SLDPKTATFTHNDGRSVNLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI  116 (304)
Q Consensus        42 ~~dv~~vl~~yp-~L~p~~~~ft~~dG~~~~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~  116 (304)
                      .++...+-+.-+ ++...  .--..|| ..+++...++|    ...|.|..|.+  .|.++++||+.||.|++. |.   
T Consensus         8 ~~E~~~~~~~~~~g~~~~--p~~~~~~-~~n~~~W~~~i~gp~gtpY~gg~f~~--~i~fp~~YP~~pP~v~f~-t~---   78 (156)
T d2uyza1           8 AQERKAWRKDHPFGFVAV--PTKNPDG-TMNLMNWECAIPGKKGTPWEGGLFKL--RMLFKDDYPSSPPKCKFE-PP---   78 (156)
T ss_dssp             HHHHHHHHHSCCTTCEEE--EEECTTS-CEEEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC---
T ss_pred             HHHHHHHHHCCCCCeEEE--ecCCCCC-CCcccEEEEEEEcCCCCCccCCEEEE--EEeCCccccCCCceeeec-cc---
Confidence            366666555433 22211  1112245 34666555555    34589989876  889999999999999996 42   


Q ss_pred             ecCCCCcccCCCceeccccc---cccCCCCCHHHHHHHHHHHhc
Q 039489          117 IKRPHPHVTPSGLVSIPYLQ---NWIYPSSNLVDLVRELSACFS  157 (304)
Q Consensus       117 I~~~~~~Vd~~G~v~lpyL~---~W~~~~s~L~~Lv~~l~~~F~  157 (304)
                        .-|++|+.+|+||+..|+   +|++ .++|.++|..|..+|.
T Consensus        79 --i~HPnV~~~G~icl~~l~~~~~W~p-~~ti~~il~~i~~ll~  119 (156)
T d2uyza1          79 --LFHPNVYPSGTVSLSILEEDKDWRP-AITIKQILLGIQELLN  119 (156)
T ss_dssp             --CCSTTBCTTSBBCCGGGCTTTTCCT-TCCHHHHHHHHHHHHH
T ss_pred             --cccccccccceeeecccCcccccCC-cccHHHHHHHHHHHhc
Confidence              239999999999999996   6987 7899999999999994

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=98.67  E-value=1.3e-07  Score=75.70  Aligned_cols=106  Identities=19%  Similarity=0.303  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHhCC-CCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceec
Q 039489           40 LIRQHLLTLISTFP-SLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIK  118 (304)
Q Consensus        40 ~v~~dv~~vl~~yp-~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~  118 (304)
                      ++.+|+..+.+.-+ +++..   +..++.-..--+.+.|-=--.|+|..|.+  .|-++++||+.||.|.+. |+  +  
T Consensus         3 ~L~kEl~~l~~~~~~gi~~~---~~~~~dl~~w~~~i~Gp~~tpyegg~f~~--~i~fp~~YP~~pP~v~f~-t~--i--   72 (125)
T d2awfa1           3 LLRRQLAELNKNPVEGFSAG---LIDDNDLYRWEVLIIGPPDTLYEGGVFKA--HLTFPKDYPLRPPKMKFI-TE--I--   72 (125)
T ss_dssp             HHHHHHHHHHHSCCTTEEEE---ESSTTCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEEC-SC--C--
T ss_pred             hHHHHHHHHHhCCCCCEEEE---eCCCCCceEEEEEEeCCCCcccCCCeeEE--EEecCCCcCCCCCeEEec-CC--C--
Confidence            35688888866533 23221   22222233344567776666799999988  899999999999999986 43  2  


Q ss_pred             CCCCcccCCCceeccccc--------------cccCCCCCHHHHHHHHHHHhc
Q 039489          119 RPHPHVTPSGLVSIPYLQ--------------NWIYPSSNLVDLVRELSACFS  157 (304)
Q Consensus       119 ~~~~~Vd~~G~v~lpyL~--------------~W~~~~s~L~~Lv~~l~~~F~  157 (304)
                       -|++||.+|+||+..|+              +|++ ..++..++..|+..|.
T Consensus        73 -~Hpni~~~G~iCl~iL~~~~~~~~~~~~~~~~Wsp-~~ti~~iL~~i~~ll~  123 (125)
T d2awfa1          73 -WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLP-IHTVETIMISVISMLA  123 (125)
T ss_dssp             -CCTTBCTTCBBCCGGGSCC---------CTTSCCT-TCCHHHHHHHHHHHHS
T ss_pred             -CccccCCCCEEEeccccCccccccccccccCCcCc-cCcHHHHHHHHHHHhh
Confidence             39999999999999995              4886 8899999999998874

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=98.65  E-value=1.3e-07  Score=78.78  Aligned_cols=106  Identities=24%  Similarity=0.389  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP  120 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~  120 (304)
                      +.+|+..+...-+ -...  ..-.+|--..--+.|.|.=-..|+|..|.+  .|.|+++||+.||.|++. |.  +   -
T Consensus        14 l~kEl~~l~~~~~-~gi~--~~p~~~dl~~W~~~i~Gp~~t~yegg~f~~--~i~fp~~YP~~pP~v~f~-t~--i---~   82 (156)
T d2e2ca_          14 LQQELRTLLMSGD-PGIT--AFPDGDNLFKWVATLDGPKDTVYESLKYKL--TLEFPSDYPYKPPVVKFT-TP--C---W   82 (156)
T ss_dssp             HHHHHHHHHHHCC-TTEE--EEESSSCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC--C---C
T ss_pred             HHHHHHHHhHCCC-CCEE--EEECCCcccEEEEEEEcCCccccCCCEEEE--EEEecCCCCCCCceeecc-cc--C---c
Confidence            4588888866522 2221  222223333344556665556799998876  999999999999999995 43  2   3


Q ss_pred             CCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489          121 HPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       121 ~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      |++||.+|+||+.+|. .|++ ..+|.+++..+..+|..
T Consensus        83 Hpnv~~~G~icl~~l~~~Wsp-~~~i~~vl~~i~~ll~~  120 (156)
T d2e2ca_          83 HPNVDQSGNICLDILKENWTA-SYDVRTILLSLQSLLGE  120 (156)
T ss_dssp             BTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHTTS
T ss_pred             CCCCCCCCCccccccCCCCCC-cccHHHHHHHHHHHHhC
Confidence            9999999999999998 5765 88999999999998753

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=98.65  E-value=1e-07  Score=77.97  Aligned_cols=103  Identities=22%  Similarity=0.400  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI  116 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~  116 (304)
                      +.+|+..+.+. +.-..  .+...+|    +++...++|    --.|+|..|.+  .|-+|++||+.||.|++. |.   
T Consensus         6 L~~E~~~l~~~-~~~~i--~~~~~~~----n~~~w~~~i~gp~~t~y~gg~f~~--~i~fp~~YP~~pP~v~f~-t~---   72 (147)
T d1z2ua1           6 IQKELQDLGRD-PPAQC--SAGPVGD----DLFHWQATIMGPPESPYQGGVFFL--TIHFPTDYPFKPPKVAFT-TR---   72 (147)
T ss_dssp             HHHHHHHHHHS-CCSSE--EEEEETT----EEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC---
T ss_pred             HHHHHHHHHhC-CCCCe--EEEECCC----chhhhhheecCCCCCCcCCCceEE--EEecCcCCCCCCceEEEe-cC---
Confidence            44777777654 21111  1122222    455555555    35688877766  889999999999999996 42   


Q ss_pred             ecCCCCcccCCCceeccccccccCCCCCHHHHHHHHHHHhcc
Q 039489          117 IKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       117 I~~~~~~Vd~~G~v~lpyL~~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                        .-|++||.+|+||+..|.+|..+..++.+++..|...|..
T Consensus        73 --i~HPnV~~~G~iCl~~l~~~w~p~~~i~~Il~~i~~ll~~  112 (147)
T d1z2ua1          73 --IYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD  112 (147)
T ss_dssp             --CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred             --CceeeECCCCCEeeehhcccCCCCCCHHHHHHHHHHHhcc
Confidence              2399999999999999996655688999999999998855

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.62  E-value=6.1e-08  Score=80.35  Aligned_cols=79  Identities=25%  Similarity=0.462  Sum_probs=63.9

Q ss_pred             eEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccC-CCceeccccc-cccCCCCCHHHH
Q 039489           71 NLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTP-SGLVSIPYLQ-NWIYPSSNLVDL  148 (304)
Q Consensus        71 ~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~-~G~v~lpyL~-~W~~~~s~L~~L  148 (304)
                      --.+|.|---..|+|..|.+  .|.|+++||+.||.|++. |+     .-|++||. +|.||+..+. .|++ ..+|.++
T Consensus        39 w~~~i~gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~-t~-----i~Hpni~~~~g~ic~~~~~~~W~p-~~~i~~i  109 (154)
T d2bepa1          39 LRGEIAGPPDTPYEGGRYQL--EIKIPETYPFNPPKVRFI-TK-----IWHPNISSVTGAICLDILKDQWAA-AMTLRTV  109 (154)
T ss_dssp             EEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC-----CCBTTBCTTTCBBCCGGGTTTCCT-TCCHHHH
T ss_pred             eEeeEecCccccccCCeeEE--EEeccccccCCCCcceec-cc-----CCCCCeeCCCCccccccccccCCC-cCCHHHH
Confidence            33445665455788888865  999999999999999996 43     24999997 7999999888 6765 7899999


Q ss_pred             HHHHHHHhcc
Q 039489          149 VRELSACFSR  158 (304)
Q Consensus       149 v~~l~~~F~~  158 (304)
                      +..|..+|..
T Consensus       110 l~~i~~ll~~  119 (154)
T d2bepa1         110 LLSLQALLAA  119 (154)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHcC
Confidence            9999999974

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=98.61  E-value=1.2e-07  Score=79.10  Aligned_cols=106  Identities=17%  Similarity=0.315  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHhC-CCCccccceeecCCC-ceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCcee
Q 039489           40 LIRQHLLTLISTF-PSLDPKTATFTHNDG-RSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMII  117 (304)
Q Consensus        40 ~v~~dv~~vl~~y-p~L~p~~~~ft~~dG-~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I  117 (304)
                      ++++++..+.+.- +++...    ..+|+ -..--+.+.|.---.|+|..|.+  .|.||.+||+.||.|++. |.  + 
T Consensus         4 ~L~kE~~~l~~~~~~g~~v~----~~~~~dl~~W~~~i~gp~~tpY~gg~f~~--~i~fp~~YP~~pP~v~f~-t~--i-   73 (161)
T d1pzva_           4 LLKKQLADMRRVPVDGFSAG----LVDDNDIYKWEVLVIGPPDTLYEGGFFKA--ILDFPRDYPQKPPKMKFI-SE--I-   73 (161)
T ss_dssp             HHHHHHHHHHHSCCTTEEEE----ESSTTCTTEEEEEEECCTTSSCSSCEEEE--EEECCTTGGGSCCEEEEC-SC--C-
T ss_pred             HHHHHHHHHHhCCCCCEEEE----ECCCCCceEEEEEEECCcchhhcCCEEEE--EEeCCCCCCCCCCeEEec-CC--C-
Confidence            4567777776542 233332    12232 23333456776666889988877  999999999999999996 43  2 


Q ss_pred             cCCCCcccCCCceecccccc--------------ccCCCCCHHHHHHHHHHHhcc
Q 039489          118 KRPHPHVTPSGLVSIPYLQN--------------WIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       118 ~~~~~~Vd~~G~v~lpyL~~--------------W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                        -|++|+.+|+||++.|+.              |++ ..+|..++..+...|..
T Consensus        74 --~HPnI~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p-~~~i~~iL~~i~~ll~~  125 (161)
T d1pzva_          74 --WHPNIDKEGNVCISILHDPGDDKWGYERPEERWLP-VHTVETILLSVISMLTD  125 (161)
T ss_dssp             --CCTTBCTTSBBCCGGGCCC---------CCSSCCT-TCCHHHHHHHHHHHHHS
T ss_pred             --CCcccCCCCccchhhcCCcccccccccccccccCc-cccHHHHHHHHHHHHhC
Confidence              399999999999999964              776 67999999999998864

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=98.60  E-value=2.4e-07  Score=76.20  Aligned_cols=101  Identities=20%  Similarity=0.445  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEeccc----ccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI  116 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIP----i~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~  116 (304)
                      +.+|+..+.+.-+ -...  ..-..|    +++..+++|.    ..|+|..|.+  .|.||.+||+.||.|++. |.   
T Consensus         8 l~~El~~l~~~~~-~gi~--~~p~~~----n~~~w~~~i~gp~~tpy~gg~f~~--~i~~p~~YP~~pP~v~f~-t~---   74 (153)
T d1ayza_           8 LMRDFKRMKEDAP-PGVS--ASPLPD----NVMVWNAMIIGPADTPYEDGTFRL--LLEFDEEYPNKPPHVKFL-SE---   74 (153)
T ss_dssp             HHHHHHHHHHSCC-TTEE--EEEETT----EEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC---
T ss_pred             HHHHHHHHhHCCC-CCEE--EEECCC----cHHhHhheeeCCCCCccCCCEEEE--EEecCccccCCCCeeeec-cC---
Confidence            4578887766532 1111  121122    4555555553    5788888766  999999999999999995 32   


Q ss_pred             ecCCCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhc
Q 039489          117 IKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFS  157 (304)
Q Consensus       117 I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~  157 (304)
                        .-|++|+.+|.||+.+|. .|+ +..+|.++|..|..+|.
T Consensus        75 --i~HPnI~~~G~icl~~l~~~W~-p~~~i~~il~~i~~ll~  113 (153)
T d1ayza_          75 --MFHPNVYANGEICLDILQNRWT-PTYDVASILTSIQSLFN  113 (153)
T ss_dssp             --CCCTTBCTTSBBCCGGGTTTCC-TTCCHHHHHHHHHHHHT
T ss_pred             --CCccCCCCCCccccccccccCC-CcCcHHHHHHHHHHHHc
Confidence              249999999999999998 555 48899999999999885

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=98.59  E-value=1.9e-07  Score=77.30  Aligned_cols=102  Identities=22%  Similarity=0.370  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHhC-CCCccccceeecCCCceeeEEEEEeccc----ccccCcccceeEEEeecccCCCCCCeEEEecCCCc
Q 039489           41 IRQHLLTLISTF-PSLDPKTATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDM  115 (304)
Q Consensus        41 v~~dv~~vl~~y-p~L~p~~~~ft~~dG~~~~LL~L~GtIP----i~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m  115 (304)
                      +.+|+..+.+.- +++..    .-.+|    +++...++|.    -.|.|..|.+  .|.||.+||..||.|++. |.  
T Consensus         8 l~~E~~~l~~~~~~g~~~----~p~~~----n~~~w~~~i~gp~~t~y~gg~f~~--~i~fp~~YP~~pP~v~F~-t~--   74 (152)
T d1jata_           8 IIKETEKLVSDPVPGITA----EPHDD----NLRYFQVTIEGPEQSPYEDGIFEL--ELYLPDDYPMEAPKVRFL-TK--   74 (152)
T ss_dssp             HHHHHHHHHHSCCTTEEE----EEETT----EEEEEEEEEECCTTSTTTTEEEEE--EEECCTTTTTSCCEEEEC-SC--
T ss_pred             HHHHHHHHHhCCCCCEEE----EEcCC----ccchhheeeeCCchhhhcCCEEEE--EEecCccCCCCCcEEEec-CC--
Confidence            448888887642 22221    22222    4555555553    3688887776  999999999999999886 43  


Q ss_pred             eecCCCCcccCCCceeccccccccCCCCCHHHHHHHHHHHhcc
Q 039489          116 IIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       116 ~I~~~~~~Vd~~G~v~lpyL~~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                         .-|++||.+|.|++..+..|..+..+|.+++..|...|..
T Consensus        75 ---i~HPnI~~~G~icl~~~~~~W~p~~~i~~il~~i~~ll~~  114 (152)
T d1jata_          75 ---IYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLAS  114 (152)
T ss_dssp             ---CCBTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred             ---CCCCcCCCCCCeeeccccccCCchhHHHHHHHHHHHHHcC
Confidence               2499999999999999985444588999999999999865

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=98.57  E-value=2.5e-07  Score=76.28  Aligned_cols=106  Identities=20%  Similarity=0.358  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHh-CCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceec
Q 039489           40 LIRQHLLTLIST-FPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIK  118 (304)
Q Consensus        40 ~v~~dv~~vl~~-yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~  118 (304)
                      ++.+|+..+.+. .+++    .+.-.+|--..--+++.|----.|+|..|.+  .|-++++||..||.|++. |.     
T Consensus         8 ~L~kE~~~l~~~~~~gi----~v~p~~~n~~~W~~~i~Gp~~t~yegg~f~~--~i~fp~~YP~~pP~v~f~-t~-----   75 (148)
T d1yrva1           8 LLHRDFCDLKENNYKGI----TAKPVSEDMMEWEVEIEGLQNSVWQGLVFQL--TIHFTSEYNYAPPVVKFI-TI-----   75 (148)
T ss_dssp             HHHHHHHHHHHHCCTTE----EEEECSTTSCEEEEEEECCTTSTTTTCEEEE--EEECCTTBTTBCCEEEES-SC-----
T ss_pred             HHHHHHHHHHHCCCCCE----EEEECCCcccEEEEEEEeCCCCccCCCceEE--EEEeccccccCCceeeec-cc-----
Confidence            467888888776 3333    2233334333344555554445799999877  889999999999999996 43     


Q ss_pred             CCCCccc-CCCceeccccc---cccCCCCCHHHHHHHHHHHhcc
Q 039489          119 RPHPHVT-PSGLVSIPYLQ---NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       119 ~~~~~Vd-~~G~v~lpyL~---~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      .-|++|| .+|+||+.+|.   +|++ ..+|.+++..+.+.|..
T Consensus        76 i~HpnV~~~~G~iC~~~l~~~~~W~p-~~tl~~vL~~I~~ll~~  118 (148)
T d1yrva1          76 PFHPNVDPHTGQPCIDFLDNPEKWNT-NYTLSSILLALQVMLSN  118 (148)
T ss_dssp             CCCTTBCTTTCCBCCHHHHCGGGCCT-TCCHHHHHHHHHHHHTS
T ss_pred             cccCceecCcccccccccCchhhcCc-cccHHHHHHHHHHHHhC
Confidence            2499999 58999999984   8987 78899999999999863

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=98.56  E-value=1.2e-07  Score=77.54  Aligned_cols=73  Identities=25%  Similarity=0.498  Sum_probs=60.5

Q ss_pred             ecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceecccccc--ccCCCCCHHHHHHHHHH
Q 039489           77 GTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQN--WIYPSSNLVDLVRELSA  154 (304)
Q Consensus        77 GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~~--W~~~~s~L~~Lv~~l~~  154 (304)
                      |--.-.|+|..|.+  .|.||++||+.||.|++. |.  +   -|++|+.+|.||++.|+.  |. +..+|.+++..|..
T Consensus        37 gp~~tpY~gg~f~~--~i~fp~~YP~~pP~v~f~-t~--i---~HPnV~~~G~icl~~l~~~~w~-p~~~i~~il~~i~~  107 (144)
T d1c4zd_          37 VPDNPPYDKGAFRI--EINFPAEYPFKPPKITFK-TK--I---YHPNIDEKGQVCLPVISAENWK-PATKTDQVIQSLIA  107 (144)
T ss_dssp             CCCSSSCCSCCEEE--EEECCTTTTTSCCEEEES-SC--C---CCTTBCTTCBBCCTTTSSSSCC-TTCCHHHHHHHHHH
T ss_pred             CCCCcCccCCEEEE--EEEecCcccCCCceeecc-CC--C---CCcCCccCCccccccccCCCCC-CcccHHHHHHHHHH
Confidence            43355688888865  999999999999999995 43  3   399999999999999994  44 47899999999999


Q ss_pred             Hhcc
Q 039489          155 CFSR  158 (304)
Q Consensus       155 ~F~~  158 (304)
                      .|..
T Consensus       108 ll~~  111 (144)
T d1c4zd_         108 LVND  111 (144)
T ss_dssp             HHHS
T ss_pred             HHhC
Confidence            9864

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=98.53  E-value=9.9e-08  Score=79.68  Aligned_cols=106  Identities=21%  Similarity=0.368  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCC-ceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecC
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDG-RSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR  119 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG-~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~  119 (304)
                      +.+|+..+.+.=+   +...+.-.+++ -..-.+.+.|--...|+|..|.+  .|.+|++||+.||.|++. |.  +   
T Consensus         8 L~~E~~~l~~~~~---~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~-t~--i---   76 (164)
T d2ucza_           8 LLKELQQLIKDSP---PGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNA--KLEFPKDYPLSPPKLTFT-PS--I---   76 (164)
T ss_dssp             HHHHHHHHHHSCC---TTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC--C---
T ss_pred             HHHHHHHHhhCCC---CCEEEEECCccchhhhheeeeCCCcccccCCeeEE--EEecCCCCCCCCCeEEee-cC--c---
Confidence            3477777765321   11111211222 12223445554444689988877  899999999999999985 33  2   


Q ss_pred             CCCcccCCCceecccccc--------------ccCCCCCHHHHHHHHHHHhcc
Q 039489          120 PHPHVTPSGLVSIPYLQN--------------WIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       120 ~~~~Vd~~G~v~lpyL~~--------------W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      -|++|+.+|+||+..|..              |++ ..+|..++..|...|.+
T Consensus        77 ~HPnv~~~G~vCl~il~~~~~~~~~~~~~~~~w~p-~~ti~~il~~i~~ll~~  128 (164)
T d2ucza_          77 LHPNIYPNGEVCISILHSPGDDPNMYELAEERWSP-VQSVEKILLSVMSMLSE  128 (164)
T ss_dssp             SCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCT-TCCHHHHHHHHHHHHHS
T ss_pred             eeceEcCCCCeeeccccCccccccccccccccCCc-cccHHHHHHHHHHHHhC
Confidence            299999999999999963              665 77899999999988874

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=98.48  E-value=2.3e-07  Score=77.21  Aligned_cols=70  Identities=20%  Similarity=0.364  Sum_probs=59.6

Q ss_pred             cccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489           80 PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus        80 Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                      --.|+|..|.+  .|.|+++||+.||.|++. +.  +   -|++||.+|+||+..+. +|++ ..+|.+++..+..+|.+
T Consensus        42 ~t~Y~gg~f~~--~i~fp~~YP~~pP~V~f~-t~--i---~HPnv~~~G~ic~~~~~~~W~p-~~~i~~il~~I~~ll~~  112 (157)
T d1y8xa1          42 EGFYKSGKFVF--SFKVGQGYPHDPPKVKCE-TM--V---YHPNIDLEGNVCLNILREDWKP-VLTINSIIYGLQYLFLE  112 (157)
T ss_dssp             SSTTTTBCEEE--EEECCTTTTTSCCEEEEC-SC--C---CBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             CCCcCCCeEEE--EEEecCCCCCCCceeeec-cc--C---CCccccccceeeeeecccCCCC-CCcHHHHHHHHHHHHcC
Confidence            35688888877  889999999999999985 32  2   39999999999999887 6765 88999999999999964

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=98.46  E-value=2e-07  Score=77.72  Aligned_cols=104  Identities=20%  Similarity=0.340  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489           41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP  120 (304)
Q Consensus        41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~  120 (304)
                      +.+|+..++..-..      +|.. |-..+--+.+.|---..|+|..|.+  .|.||++||..||.|++. |.  +   -
T Consensus         5 ~~~e~~~l~~~~~~------~~~~-d~~~~w~v~i~Gp~~TpY~gg~f~~--~i~fp~~YP~~pP~v~F~-t~--i---~   69 (158)
T d1yf9a1           5 REMDYMRLCNSTRK------VYPS-DTVAEFWVEFKGPEGTPYEDGTWML--HVQLPSDYPFKSPSIGFC-NR--I---L   69 (158)
T ss_dssp             HHHHHHHHHSSSSC------EEEC-SSTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC--C---C
T ss_pred             HHHHHHHHhcCCCc------CCCC-CCceEEEEEEECCCCCCccCcEEEE--EEECcccchhhceeEEec-CC--C---C
Confidence            34788888765432      3442 4445566889998888899999975  999999999999999985 43  2   4


Q ss_pred             CCcccC-CCceeccccc-cccCCCCCHHHHHHHHHHHhccCC
Q 039489          121 HPHVTP-SGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSREP  160 (304)
Q Consensus       121 ~~~Vd~-~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~~p  160 (304)
                      |++||. +|+||+..|. +|++ ..++..+|..++..|-.+|
T Consensus        70 HPnI~~~~G~vcl~il~~~W~p-~~~i~~il~~~i~~ll~~P  110 (158)
T d1yf9a1          70 HPNVDERSGSVCLDVINQTWTP-MYQLENIFDVFLPQLLRYP  110 (158)
T ss_dssp             BTTBCTTTCBBCHHHHHHHCCT-TCCTHHHHHTHHHHHHHSC
T ss_pred             CCCCccCcccccccccccccCc-hHhhhhHHHHHHHHHhcCC
Confidence            999987 7999999988 8986 6778888866554333344

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.36  E-value=5.3e-07  Score=75.30  Aligned_cols=80  Identities=19%  Similarity=0.401  Sum_probs=63.7

Q ss_pred             eEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccC-CCceeccccccccCCCCCH
Q 039489           71 NLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTP-SGLVSIPYLQNWIYPSSNL  145 (304)
Q Consensus        71 ~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~-~G~v~lpyL~~W~~~~s~L  145 (304)
                      +|+.-.|+|    ...|.|..|.+  .|.||.+||+.||.|++. |.     .-|++|+. +|.||+..|..|..+..+|
T Consensus        42 nl~~W~~~I~Gp~~TpY~gg~f~~--~i~fp~~YP~~pP~V~F~-t~-----i~HPni~~~~G~icl~~l~~~W~p~~si  113 (161)
T d2f4za1          42 DIHRWRGFIAGPLGTPYEGGHFTL--DIVIPPDYPYNPPKMKFV-TK-----IWHPNISSQTGAICLDILKHEWSPALTI  113 (161)
T ss_dssp             EEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC-----CCBTTBCTTTCBBCCGGGTTTCCTTSCH
T ss_pred             ccceeEEEEeCCCCCccCCCEEEE--EEeccCCCCCCCcEEEec-CC-----CCCCceECCCCCeecCcccccCCCcccH
Confidence            566666666    34788988876  899999999999999996 43     23888755 7999999998544448899


Q ss_pred             HHHHHHHHHHhcc
Q 039489          146 VDLVRELSACFSR  158 (304)
Q Consensus       146 ~~Lv~~l~~~F~~  158 (304)
                      .+++..+..+|..
T Consensus       114 ~~iL~~I~~ll~~  126 (161)
T d2f4za1         114 RTALLSIQAMLAD  126 (161)
T ss_dssp             HHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999853

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=98.30  E-value=8.3e-07  Score=72.32  Aligned_cols=76  Identities=21%  Similarity=0.316  Sum_probs=62.6

Q ss_pred             EEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCC-Cceeccccc--cccCCCCCHHHHH
Q 039489           73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPS-GLVSIPYLQ--NWIYPSSNLVDLV  149 (304)
Q Consensus        73 L~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~-G~v~lpyL~--~W~~~~s~L~~Lv  149 (304)
                      ..|.|.---.|+|..|.+  .|-++.+||+.||.|++. |+     .-|++|+.+ |.||+.+|.  +|++ ..+|..++
T Consensus        42 ~~i~Gp~~tpy~gg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~HpnV~~~~G~icl~~l~~~~Wsp-~~ti~~IL  112 (136)
T d1jatb_          42 GTILGPPHSNHENRIYSL--SIDCGPNYPDSPPKVTFI-SK-----INLPCVNPTTGEVQTDFHTLRDWKR-AYTMETLL  112 (136)
T ss_dssp             EEEECCSSSTTTTCEEEE--EEECCTTTTTSCCEEEES-BC-----CCCTTBCTTTCBBCTTSHHHHTCCT-TCCHHHHH
T ss_pred             EEEECCCCChhhcCEEEE--EEEecCCCCCCCCEEEEe-cc-----ccccccccCCCeEECCCCcccCcCc-cCcHHHHH
Confidence            345565555788988875  999999999999999995 32     349999965 999999875  8997 78999999


Q ss_pred             HHHHHHhc
Q 039489          150 RELSACFS  157 (304)
Q Consensus       150 ~~l~~~F~  157 (304)
                      ..|...|.
T Consensus       113 ~~i~~lL~  120 (136)
T d1jatb_         113 LDLRKEMA  120 (136)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            99999885

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=98.23  E-value=2.5e-06  Score=69.81  Aligned_cols=78  Identities=23%  Similarity=0.359  Sum_probs=61.1

Q ss_pred             EEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccC-CCceeccccccccCCCCCHHHHHHH
Q 039489           73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTP-SGLVSIPYLQNWIYPSSNLVDLVRE  151 (304)
Q Consensus        73 L~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~-~G~v~lpyL~~W~~~~s~L~~Lv~~  151 (304)
                      +.|.|-=-..|+|..|.+  .|.||++||+.||.|++. |.     .-|++||. .|.|++..+.+|..+..+|.+++..
T Consensus        36 ~~I~gp~~t~y~gg~f~~--~i~fp~~YP~~pP~v~f~-t~-----i~HpnI~~~~~~~~~~~~~~~W~p~~ti~~il~~  107 (149)
T d1fzya_          36 GTFLGPPGTPYEGGKFVV--DIEVPMEYPFKPPKMQFD-TK-----VYHPNISSVTGAICLDILKNAWSPVITLKSALIS  107 (149)
T ss_dssp             EEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC-----CCBTTBCTTTCCBCCGGGTTTCCTTCCHHHHHHH
T ss_pred             EEEEcCCCCCCCCCceeE--EEEecCCcccCCcEEEec-CC-----CcCCcccCCcceeechhhcccCCCcCCHHHHHHH
Confidence            344443334689988876  999999999999999996 32     24999998 6678888888654458999999999


Q ss_pred             HHHHhcc
Q 039489          152 LSACFSR  158 (304)
Q Consensus       152 l~~~F~~  158 (304)
                      +..+|..
T Consensus       108 i~~ll~~  114 (149)
T d1fzya_         108 LQALLQS  114 (149)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHhC
Confidence            9999864

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=98.19  E-value=4.5e-06  Score=67.97  Aligned_cols=78  Identities=23%  Similarity=0.258  Sum_probs=61.8

Q ss_pred             EEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCce-e---ccccccccCCCCCHHH
Q 039489           72 LLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLV-S---IPYLQNWIYPSSNLVD  147 (304)
Q Consensus        72 LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v-~---lpyL~~W~~~~s~L~~  147 (304)
                      -..|.|----.|+|..|.+  .|-++++||++||.|.+. |+     ..|++|+.+|.+ +   +..|.+|++ ..+|..
T Consensus        42 ~~~I~Gp~~TpYegg~f~~--~i~fp~~YP~~pP~v~F~-t~-----i~HpnV~~~~g~~~~~~l~~l~~Wsp-~~ti~~  112 (139)
T d2a4da1          42 TGMIIGPPRTIYENRIYSL--KIECGPKYPEAPPFVRFV-TK-----INMNGVNSSNGVVDPRAISVLAKWQN-SYSIKV  112 (139)
T ss_dssp             EEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-BC-----CCCTTBCTTTCBBCGGGSHHHHTCCT-TCCHHH
T ss_pred             EEEEECCCCCchhcCEEEE--EEECCCCCCCCCCEEEEe-cC-----cccccCcCCCCEEcceecCcccCCCc-cCcHHH
Confidence            3556666566788988887  889999999999999985 43     349999988654 3   445579997 789999


Q ss_pred             HHHHHHHHhcc
Q 039489          148 LVRELSACFSR  158 (304)
Q Consensus       148 Lv~~l~~~F~~  158 (304)
                      ++..|...|..
T Consensus       113 iL~~i~slL~~  123 (139)
T d2a4da1         113 VLQELRRLMMS  123 (139)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHHCC
Confidence            99999998864

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=98.15  E-value=8.9e-06  Score=67.14  Aligned_cols=99  Identities=16%  Similarity=0.283  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHhCC-CCccccceeecCCCceeeEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCc
Q 039489           41 IRQHLLTLISTFP-SLDPKTATFTHNDGRSVNLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDM  115 (304)
Q Consensus        41 v~~dv~~vl~~yp-~L~p~~~~ft~~dG~~~~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m  115 (304)
                      +.+|+..+.+.=+ ++..    .-.+|    +++...++|    -..|+|..|.+  .|.||++||+.||.|++. |   
T Consensus         6 l~kE~~~l~~~p~~g~~~----~p~~~----n~~~w~~~i~Gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~-t---   71 (157)
T d2f4wa1           6 LKQDYLRIKKDPVPYICA----EPLPS----NILEWHYVVRGPEMTPYEGGYYHG--KLIFPREFPFKPPSIYMI-T---   71 (157)
T ss_dssp             HHHHHHHHHHSCCTTEEE----EEETT----EEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEEC-S---
T ss_pred             HHHHHHHHHhCCCCCEEE----EEcCc----ccceeeeEEECCCCccccCCEEEE--EEeccCCcCCCCCEEEee-C---
Confidence            4488888765422 2211    11122    444444444    45788888776  999999999999999985 3   


Q ss_pred             eecCCCCcccCCCceecccc----ccccCCCCCHHHHHHHHHHHhcc
Q 039489          116 IIKRPHPHVTPSGLVSIPYL----QNWIYPSSNLVDLVRELSACFSR  158 (304)
Q Consensus       116 ~I~~~~~~Vd~~G~v~lpyL----~~W~~~~s~L~~Lv~~l~~~F~~  158 (304)
                          +|.|++.+|++++-.|    ++|++ ..+|..++..+...|..
T Consensus        72 ----~~~~~~~~g~~~~~~l~~~~~~Wsp-~~ti~~il~~i~~ll~~  113 (157)
T d2f4wa1          72 ----PNGRFKCNTRLCLSITDFHPDTWNP-AWSVSTILTGLLSFMVE  113 (157)
T ss_dssp             ----CCSSBCTTSCBC----------CCT-TCCHHHHHHHHHHHHHS
T ss_pred             ----CCcccCCCCCeeeeeccccCCCCCc-cCcHHHHHHHHHHHccC
Confidence                2555566676665444    36987 78999999999998864

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=8.6e-06  Score=67.61  Aligned_cols=66  Identities=17%  Similarity=0.346  Sum_probs=54.0

Q ss_pred             eeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc--cccCCCCCHHHHHHHHHHHhccCCC
Q 039489           90 IPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ--NWIYPSSNLVDLVRELSACFSREPP  161 (304)
Q Consensus        90 IPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~--~W~~~~s~L~~Lv~~l~~~F~~~pP  161 (304)
                      +-+.|.++++||+.||.|++. |+  +.  .+++|+.+|.||+..|+  .|++ ..+|..+|..|...|.+..|
T Consensus        68 ~~l~i~fp~~YP~~PP~v~f~-t~--i~--hpn~~~~~G~iCl~iL~~~~WsP-~~ti~~IL~~i~~ll~~~~p  135 (162)
T d1zuoa1          68 ILLNFSFKDNFPFDPPFVRVV-LP--VL--SGGYVLGGGALCMELLTKQGWSS-AYSIESVIMQINATLVKGKA  135 (162)
T ss_dssp             EEEEEECCTTTTSSCCEEEEE-ES--CE--ESTTBCGGGBBCCGGGSTTTCCT-TSCHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEECCCchhhhcceEEEE-EE--ee--ccccccCCceeecccccCCCCCC-cccHHHHHHHHHHHHcCCCC
Confidence            556899999999999999996 33  22  24558889999999996  5997 88999999999998876544

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=85.65  E-value=2  Score=31.68  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489          266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM  298 (304)
Q Consensus       266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~  298 (304)
                      ++|.++...|.+.|..|+.+..+++..+..+..
T Consensus        67 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll   99 (110)
T d1seta1          67 EALIARGKALGEEAKRLEEALREKEARLEALLL   99 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667778888888999999999999988887754

>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Eukaryotic DNA topoisomerase I, dispensable insert domain
family: Eukaryotic DNA topoisomerase I, dispensable insert domain
domain: Eukaryotic DNA topoisomerase I, dispensable insert domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.09  E-value=2.4  Score=29.61  Aligned_cols=58  Identities=14%  Similarity=0.143  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489          240 VEMVHADITGMRKAREVEVEGLFSTQALLR-RREEEIDRGLKELQDEREGLEQQLQIVL  297 (304)
Q Consensus       240 ~dkl~~el~~l~~t~~ae~e~l~~~q~eL~-~~~~~l~~~I~~L~~E~~eLe~~l~~l~  297 (304)
                      ++.|+..|.+.+.+..+-...+..+..+.+ ++.++....++..+...+.|+.+|-.|.
T Consensus         4 MenLq~KI~~Kk~qi~~a~~e~K~ak~d~k~~~~~k~k~~~ekKkK~leRL~EQL~KLe   62 (72)
T d1k4ta1           4 MMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLE   62 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666676777766666666777777777 5666777777888888888888887774

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.16  E-value=3.8  Score=28.92  Aligned_cols=71  Identities=17%  Similarity=0.172  Sum_probs=37.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489          227 QTEVFKRNAVNKLVEMVHADITGMRKAR-EVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIVL  297 (304)
Q Consensus       227 a~E~~r~s~lsal~dkl~~el~~l~~t~-~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~  297 (304)
                      ..|-.||..|++.++.|+.-+=.+.... ..-.+-|.+.-   ..|+++.++++..++.|+.+.++|.++++.|.
T Consensus        12 ~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~   86 (88)
T d1nkpa_          12 VLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG   86 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4566677777777777765442111000 00111111111   45555556666667777777777777776653

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.40  E-value=0.55  Score=33.32  Aligned_cols=70  Identities=14%  Similarity=0.270  Sum_probs=42.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489          227 QTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFST---QALLRRREEEIDRGLKELQDEREGLEQQLQIV  296 (304)
Q Consensus       227 a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~---q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l  296 (304)
                      ..|-.|+..|++.++.|+.-|=......-.-.+-|...   =..|.++...++..++.|+++.+.|++.|+.|
T Consensus         8 ~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L   80 (83)
T d1nkpb_           8 ALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL   80 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45777888888888888776633221111111111111   15666666777777888888888888887654