Citrus Sinensis ID: 039504

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
NCLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK
Secondary Structure (PSIPRED)
cccccHHHHccccccccccccccccEEEEEccccccccccEEEEccHHHHHHHHHHHHccccccccccccEEEEEccHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHccccEEEccHHHHHHHHccccccccccccccccEEccccccHHHHHHHHHHccccEEEEccccccccccHHccccccccccccccccccccccccEEEEEcccccccccccccccEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHcccccccccccccccEEEEEcccccccccccEEEEcHHHHHHHHHHHcccccccccccccEEEEEEcHHHHHHHHHHHHHHHHHccEEEEEccccHHHHHHHHHHcccEEcccccHHHHHHHcccccccccHHHHHHHHcccccccHHHHHHHHHHccccEEEEcccccccccEEEEcccccccccccccccccEEcccEEEEEEcccccccccccccEEEEEEcccccc
Coil and Loop (DISEMBL)
nclhftvlseadedqipevaiepddpvalpfssgttglpkgVVLTHKSLITSVAQqvdgenpnlyltngdVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALaknpmvadydlSSIRVVLSGAAPLGKELEDALRSRVpqailgqgygmteagpVLSMCLgfakqpfptksgscgtvvrnaelkvidpetgaslphnqpgeicirgpqimk
Flexible Loop (DISEMBL)
NCLHFTVLseadedqipeVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDpetgaslphnqpgeicirgpqimk
Low Complexity Region (SEG)
NCLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSvaavvpplvlalaKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK
Disordered region (IsUnstruct)
******************************F**GTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVI*************************
Disordered Region (DISOPRED)
NCLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK
Disordered Region (DISEMBL)
NCLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK
Disordered Region (DISPRO)
*CLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQI**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NCLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
P31687	562	4-coumarate--CoA ligase 2	yes	no	1.0	0.427	0.866	1e-121
O24146	542	4-coumarate--CoA ligase 2	N/A	no	0.995	0.440	0.740	1e-106
Q42982	569	Probable 4-coumarate--CoA	yes	no	0.995	0.420	0.775	1e-105
O24145	547	4-coumarate--CoA ligase 1	N/A	no	0.995	0.436	0.723	1e-104
P41636	537	4-coumarate--CoA ligase O	N/A	no	0.995	0.445	0.728	1e-104
P31684	545	4-coumarate--CoA ligase 1	N/A	no	0.995	0.438	0.715	1e-103
Q9S777	561	4-coumarate--CoA ligase 3	yes	no	1.0	0.427	0.785	1e-103
P31685	545	4-coumarate--CoA ligase 2	N/A	no	0.995	0.438	0.715	1e-103
O24540	553	4-coumarate--CoA ligase O	N/A	no	1.0	0.433	0.725	1e-103
P14913	544	4-coumarate--CoA ligase 1	N/A	no	1.0	0.441	0.704	1e-101

>sp|P31687|4CL2_SOYBN 4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2

 Score =  432 bits (1112), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/240 (86%), Positives = 225/240 (93%)

Query: 1   NCLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE 60
           NCLHF+VLSEA+E  +PEV I PDD VA+PFSSGTTGLPKGV+LTHKSL TSVAQQVDGE
Sbjct: 176 NCLHFSVLSEANESDVPEVEIHPDDAVAMPFSSGTTGLPKGVILTHKSLTTSVAQQVDGE 235

Query: 61  NPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSV 120
           NPNLYLT  DV+LCVLPLFHI+SLNSVLLC+LRAG+ VLLMQKFEIG LLELIQRHRVSV
Sbjct: 236 NPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLLMQKFEIGTLLELIQRHRVSV 295

Query: 121 AAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE 180
           A VVPPLVLALAKNPMVAD+DLSSIR+VLSGAAPLGKELE+ALR+R+PQA+LGQGYGMTE
Sbjct: 296 AMVVPPLVLALAKNPMVADFDLSSIRLVLSGAAPLGKELEEALRNRMPQAVLGQGYGMTE 355

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           AGPVLSMCLGFAKQPF TKSGSCGTVVRNAELKV+DPETG SL +NQPGEICIRG QIMK
Sbjct: 356 AGPVLSMCLGFAKQPFQTKSGSCGTVVRNAELKVVDPETGRSLGYNQPGEICIRGQQIMK 415

Glycine max (taxid: 3847)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 2

>sp|O24146|4CL2_TOBAC 4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1

 Score =  383 bits (984), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 177/239 (74%), Positives = 211/239 (88%)

Query: 2   CLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGEN 61
           CLHF+VL++A+E  IPEV I+PDD VALP+SSGTTGLPKGV+LTHK L+TSVAQQVDGEN
Sbjct: 159 CLHFSVLTQANEHDIPEVEIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN 218

Query: 62  PNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVA 121
           PNLY+ + DV+LCVLPLFHIYSLNSVLLC LR GA +L+MQKF+I + LELIQR++V++ 
Sbjct: 219 PNLYIHSEDVMLCVLPLFHIYSLNSVLLCGLRVGAAILIMQKFDIVSFLELIQRYKVTIG 278

Query: 122 AVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181
             VPP+VLA+AK+PMV DYDLSS+R V+SGAAPLGKELED +R++ P A LGQGYGMTEA
Sbjct: 279 PFVPPIVLAIAKSPMVDDYDLSSVRTVMSGAAPLGKELEDTVRAKFPNAKLGQGYGMTEA 338

Query: 182 GPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           GPVL+MCL FAK+PF  KSG+CGTVVRNAE+K++DP+TG SLP NQ GEICIRG QIMK
Sbjct: 339 GPVLAMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPKTGNSLPRNQSGEICIRGDQIMK 397

Nicotiana tabacum (taxid: 4097)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q42982|4CL2_ORYSJ Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa subsp. japonica GN=4CL2 PE=2 SV=2

 Score =  380 bits (977), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/240 (77%), Positives = 212/240 (88%), Gaps = 1/240 (0%)

Query: 2   CLHFT-VLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE 60
           CL F  ++++ADE  +PEVAI PDDPVALPFSSGTTGLPKGVVLTH+S+++ VAQQVDGE
Sbjct: 188 CLPFWDLIADADEGSVPEVAISPDDPVALPFSSGTTGLPKGVVLTHRSVVSGVAQQVDGE 247

Query: 61  NPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSV 120
           NPNL++  GDV LCVLPLFHI+SLNSVLLC++RAGA V LM +FE+GA+L  I+R RV+V
Sbjct: 248 NPNLHMGAGDVALCVLPLFHIFSLNSVLLCAVRAGAAVALMPRFEMGAMLGAIERWRVTV 307

Query: 121 AAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE 180
           AAVVPPLVLALAKNP V  +DLSSIR+VLSGAAPLGKELEDALR+R+PQAI GQGYGMTE
Sbjct: 308 AAVVPPLVLALAKNPFVERHDLSSIRIVLSGAAPLGKELEDALRARLPQAIFGQGYGMTE 367

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           AGPVLSMC  FAK+P P KSGSCGTVVRNAELKV+DP+TG SL  N PGEICIRGPQIMK
Sbjct: 368 AGPVLSMCPAFAKEPTPAKSGSCGTVVRNAELKVVDPDTGFSLGRNLPGEICIRGPQIMK 427

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O24145|4CL1_TOBAC 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1

 Score =  378 bits (971), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 173/239 (72%), Positives = 210/239 (87%)

Query: 2   CLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGEN 61
           CLHF+ L+++DE +IPEV I+PDD VALP+SSGTTGLPKGV+LTHK L+TSVAQQVDGEN
Sbjct: 164 CLHFSELTQSDEHEIPEVKIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN 223

Query: 62  PNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVA 121
            NLY+ + DV++CVLPLFHIYSLNS+LLC LR GA +L+MQKF+I   LELIQ+++VS+ 
Sbjct: 224 ANLYMHSEDVLMCVLPLFHIYSLNSILLCGLRVGAAILIMQKFDIAPFLELIQKYKVSIG 283

Query: 122 AVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181
             VPP+VLA+AK+P+V  YDLSS+R V+SGAAPLGKELEDA+R++ P A LGQGYGMTEA
Sbjct: 284 PFVPPIVLAIAKSPIVDSYDLSSVRTVMSGAAPLGKELEDAVRTKFPNAKLGQGYGMTEA 343

Query: 182 GPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           GPVL+MCL FAK+PF  KSG+CGTVVRNAE+K++DP+TG SLP NQPGEICIRG QIMK
Sbjct: 344 GPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMK 402

Nicotiana tabacum (taxid: 4097)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P41636|4CL_PINTA 4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1

 Score =  378 bits (970), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 174/239 (72%), Positives = 207/239 (86%)

Query: 2   CLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGEN 61
           C H +VL+EADE Q P V I PDD VALP+SSGTTGLPKGV+LTHK L++SVAQQVDGEN
Sbjct: 159 CQHISVLTEADETQCPAVKIHPDDVVALPYSSGTTGLPKGVMLTHKGLVSSVAQQVDGEN 218

Query: 62  PNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVA 121
           PNLY  + DV+LCVLPLFHIYSLNSVLLC+LRAGA  L+MQKF +   LELIQ+++V+VA
Sbjct: 219 PNLYFHSDDVILCVLPLFHIYSLNSVLLCALRAGAATLIMQKFNLTTCLELIQKYKVTVA 278

Query: 122 AVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181
            +VPP+VL + K+P+V+ YD+SS+R+++SGAAPLGKELEDALR R P+AI GQGYGMTEA
Sbjct: 279 PIVPPIVLDITKSPIVSQYDVSSVRIIMSGAAPLGKELEDALRERFPKAIFGQGYGMTEA 338

Query: 182 GPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           GPVL+M L FAK PFP KSGSCGTVVRNA++K++D ETG SLPHNQ GEICIRGP+IMK
Sbjct: 339 GPVLAMNLAFAKNPFPVKSGSCGTVVRNAQIKILDTETGESLPHNQAGEICIRGPEIMK 397

Pinus taeda (taxid: 3352)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P31684|4CL1_SOLTU 4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 171/239 (71%), Positives = 210/239 (87%)

Query: 2   CLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGEN 61
           C+HF+ L ++DE +IP+V I+PDD VALP+SSGTTGLPKGV+LTHK L+TSVAQQVDGEN
Sbjct: 162 CVHFSELIQSDEHEIPDVKIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN 221

Query: 62  PNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVA 121
            NLY+ + DV++CVLPLFHIYSLNSVLLC+LR GA +L+MQKF+I   LELI +H+V++ 
Sbjct: 222 ANLYMHSDDVLMCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIAQFLELIPKHKVTIG 281

Query: 122 AVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181
             VPP+VLA+AK+P+V +YDLSS+R V+SGAAPLGKELEDA+R++ P A LGQGYGMTEA
Sbjct: 282 PFVPPIVLAIAKSPLVDNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEA 341

Query: 182 GPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           GPVL+MCL FAK+PF  KSG+CGTVVRNAE+K++DP+TG SLP NQPGEICIRG QIMK
Sbjct: 342 GPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMK 400

Solanum tuberosum (taxid: 4113)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9S777|4CL3_ARATH 4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/242 (78%), Positives = 207/242 (85%), Gaps = 2/242 (0%)

Query: 1   NCLHFTVLSEADEDQ--IPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVD 58
           NCL F+ L   DE       V I  DD  ALPFSSGTTGLPKGVVLTHKSLITSVAQQVD
Sbjct: 180 NCLPFSTLITDDETNPFQETVDIGGDDAAALPFSSGTTGLPKGVVLTHKSLITSVAQQVD 239

Query: 59  GENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRV 118
           G+NPNLYL + DV+LCVLPLFHIYSLNSVLL SLR+GA VLLM KFEIGALL+LIQRHRV
Sbjct: 240 GDNPNLYLKSNDVILCVLPLFHIYSLNSVLLNSLRSGATVLLMHKFEIGALLDLIQRHRV 299

Query: 119 SVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM 178
           ++AA+VPPLV+ALAKNP V  YDLSS+R VLSGAAPLGKEL+D+LR R+PQAILGQGYGM
Sbjct: 300 TIAALVPPLVIALAKNPTVNSYDLSSVRFVLSGAAPLGKELQDSLRRRLPQAILGQGYGM 359

Query: 179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQI 238
           TEAGPVLSM LGFAK+P PTKSGSCGTVVRNAELKV+  ET  SL +NQPGEICIRG QI
Sbjct: 360 TEAGPVLSMSLGFAKEPIPTKSGSCGTVVRNAELKVVHLETRLSLGYNQPGEICIRGQQI 419

Query: 239 MK 240
           MK
Sbjct: 420 MK 421

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P31685|4CL2_SOLTU 4-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=4CL2 PE=3 SV=1

 Score =  375 bits (962), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 171/239 (71%), Positives = 210/239 (87%)

Query: 2   CLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGEN 61
           C+HF+ L ++DE +IP+V I+PDD VALP+SSGTTGLPKGV+LTHK L+TSVAQQVDGEN
Sbjct: 162 CVHFSELIQSDEHEIPDVKIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN 221

Query: 62  PNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVA 121
            NLY+ + DV++CVLPLFHIYSLNSVLLC+LR GA +L+MQKF+I   LELI +H+V++ 
Sbjct: 222 ANLYMHSDDVLMCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIAQFLELIPKHKVTIG 281

Query: 122 AVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181
             VPP+VLA+AK+P+V +YDLSS+R V+SGAAPLGKELEDA+R++ P A LGQGYGMTEA
Sbjct: 282 PFVPPIVLAIAKSPLVHNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEA 341

Query: 182 GPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           GPVL+MCL FAK+PF  KSG+CGTVVRNAE+K++DP+TG SLP NQPGEICIRG QIMK
Sbjct: 342 GPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMK 400

Solanum tuberosum (taxid: 4113)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O24540|4CL_VANPL 4-coumarate--CoA ligase OS=Vanilla planifolia GN=4CL PE=3 SV=1

 Score =  375 bits (962), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 174/240 (72%), Positives = 211/240 (87%)

Query: 1   NCLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE 60
           N LHF+ L+ ADE+++P+V I PD  VALP+SSGTTGLPKGV+LTHK L+TSVAQQVDGE
Sbjct: 167 NILHFSELTGADENEMPKVEISPDGVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGE 226

Query: 61  NPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSV 120
           NPNLY+ + DV+LCVLPLFHIYSLNSVLLC LRAG+G+L+MQKFEI   LELIQ+++V++
Sbjct: 227 NPNLYMHSDDVLLCVLPLFHIYSLNSVLLCGLRAGSGILIMQKFEIVPFLELIQKYKVTI 286

Query: 121 AAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE 180
              VPP+VLA+AK+ +V +YDLSS+R V+SGAAPLGKELEDA+R++ P A LGQGYGMTE
Sbjct: 287 GPFVPPIVLAIAKSTVVDNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTE 346

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           AGPVL+MCL FAK+PF  KSG+CGTVVRNAE+K++DPETG+SLP N PGEICIRG QIMK
Sbjct: 347 AGPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPETGSSLPRNHPGEICIRGDQIMK 406

Vanilla planifolia (taxid: 51239)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P14913|4CL2_PETCR 4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 169/240 (70%), Positives = 208/240 (86%)

Query: 1   NCLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE 60
           +CLHF+ L EADE ++PEV I+ DD VALP+SSGTTGLPKGV+LTHK L+TSVAQQVDG+
Sbjct: 159 DCLHFSKLMEADESEMPEVVIDSDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGD 218

Query: 61  NPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSV 120
           NPNLY+ + DV++C+LPLFHIYSLN+VL C LRAG  +L+MQKF+I   LELIQ+++V++
Sbjct: 219 NPNLYMHSEDVMICILPLFHIYSLNAVLCCGLRAGVTILIMQKFDIVPFLELIQKYKVTI 278

Query: 121 AAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE 180
              VPP+VLA+AK+P+V  YDLSS+R V+SGAAPLGKELEDA+R++ P A LGQGYGMTE
Sbjct: 279 GPFVPPIVLAIAKSPVVDKYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTE 338

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           AGPVL+MCL FAK+P+  KSG+CGTVVRNAE+K++DPET ASLP NQ GEICIRG QIMK
Sbjct: 339 AGPVLAMCLAFAKEPYEIKSGACGTVVRNAEMKIVDPETNASLPRNQRGEICIRGDQIMK 398

Petroselinum crispum (taxid: 4043)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
255557999	573	AMP dependent CoA ligase, putative [Rici	1.0	0.418	0.917	1e-122
268528133	574	4-coumarate:CoA ligase 2 [Gossypium hirs	1.0	0.418	0.9	1e-121
371534669	570	Coumaroyl-CoA ligase [Vitis vinifera]	1.0	0.421	0.891	1e-119
18266852	562	RecName: Full=4-coumarate--CoA ligase 2;	1.0	0.427	0.866	1e-119
351723189	570	4-coumarate:CoA ligase isoenzyme 3 [Glyc	1.0	0.421	0.870	1e-119
225454787	570	PREDICTED: 4-coumarate--CoA ligase 2 [Vi	1.0	0.421	0.887	1e-119
147805634	531	hypothetical protein VITISV_031171 [Viti	1.0	0.451	0.887	1e-119
76177061	588	4-coumaroyl CoA ligase [Camellia sinensi	1.0	0.408	0.879	1e-118
351722899	562	4-coumarate--CoA ligase 2 [Glycine max]	1.0	0.427	0.858	1e-118
14289346	579	4-coumarate:CoA ligase 4 [Populus tricho	1.0	0.414	0.875	1e-118

>gi|255557999|ref|XP_002520028.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223540792|gb|EEF42352.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/241 (91%), Positives = 229/241 (95%), Gaps = 1/241 (0%)

Query: 1   NCLHFTVLSEADEDQIPEV-AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDG 59
           NCLHFTVLSEA E +IPEV    PDDPVALPFSSGTTGLPKGV+LTHKSLITSVAQQVDG
Sbjct: 187 NCLHFTVLSEASETEIPEVINANPDDPVALPFSSGTTGLPKGVILTHKSLITSVAQQVDG 246

Query: 60  ENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVS 119
           ENPNLYL   DVVLCVLPLFHIYSLNSVLLCSLRAGA VLLMQKF+IGALLELIQ+H+VS
Sbjct: 247 ENPNLYLKEDDVVLCVLPLFHIYSLNSVLLCSLRAGAAVLLMQKFQIGALLELIQKHKVS 306

Query: 120 VAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT 179
           VAAVVPPLVLALAKNPMVA++DLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT
Sbjct: 307 VAAVVPPLVLALAKNPMVAEFDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT 366

Query: 180 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
           EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETG SL +NQPGEICIRGPQIM
Sbjct: 367 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGCSLGYNQPGEICIRGPQIM 426

Query: 240 K 240
           K
Sbjct: 427 K 427

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|268528133|gb|ACZ06243.1| 4-coumarate:CoA ligase 2 [Gossypium hirsutum]

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/240 (90%), Positives = 228/240 (95%)

Query: 1   NCLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE 60
           NCL F+VLSEA+E++IP+V I PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE
Sbjct: 186 NCLDFSVLSEANENEIPQVTIHPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE 245

Query: 61  NPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSV 120
           NPNLYLT+ DVVLCVLPLFHIYSLNSVLLCSLRAGA VLLMQKFEIG LLELIQRH+VSV
Sbjct: 246 NPNLYLTHEDVVLCVLPLFHIYSLNSVLLCSLRAGAAVLLMQKFEIGTLLELIQRHKVSV 305

Query: 121 AAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE 180
           AAVVPPLVL LAKNP+VA +DLSSIRVVLSGAAPLGKELE+ALR RVPQA+LGQGYGMTE
Sbjct: 306 AAVVPPLVLLLAKNPVVAQFDLSSIRVVLSGAAPLGKELEEALRGRVPQAVLGQGYGMTE 365

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETG SL +NQPGEICIRG QIMK
Sbjct: 366 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGCSLGYNQPGEICIRGSQIMK 425

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|371534669|gb|AEX32786.1| Coumaroyl-CoA ligase [Vitis vinifera]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/240 (89%), Positives = 226/240 (94%)

Query: 1   NCLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE 60
           NC+HF+V+SEA+E ++PEV+I  DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE
Sbjct: 184 NCMHFSVVSEANESELPEVSINSDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE 243

Query: 61  NPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSV 120
           NPNL+LT  DVVLCVLPLFHIYSLNSVLLCSLRAGA VLLMQKFEIG LLELIQR+RVSV
Sbjct: 244 NPNLHLTPDDVVLCVLPLFHIYSLNSVLLCSLRAGAAVLLMQKFEIGTLLELIQRYRVSV 303

Query: 121 AAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE 180
           AAVVPPLVLALAKNPMV  +DLSSIRVVLSGAAPLGKELE ALRSRVPQA+LGQGYGMTE
Sbjct: 304 AAVVPPLVLALAKNPMVESFDLSSIRVVLSGAAPLGKELEAALRSRVPQAVLGQGYGMTE 363

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKV+DPETG SL  NQPGEICIRG QIMK
Sbjct: 364 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVVDPETGCSLGRNQPGEICIRGQQIMK 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18266852|sp|P31687.2|4CL2_SOYBN RecName: Full=4-coumarate--CoA ligase 2; Short=4CL 2; AltName: Full=4-coumaroyl-CoA synthase 2; AltName: Full=Clone 4CL16 gi|13559169|emb|CAC36095.1| 4-coumarate:Coenzyme A ligase isoenzyme 4 [Glycine max]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/240 (86%), Positives = 225/240 (93%)

Query: 1   NCLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE 60
           NCLHF+VLSEA+E  +PEV I PDD VA+PFSSGTTGLPKGV+LTHKSL TSVAQQVDGE
Sbjct: 176 NCLHFSVLSEANESDVPEVEIHPDDAVAMPFSSGTTGLPKGVILTHKSLTTSVAQQVDGE 235

Query: 61  NPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSV 120
           NPNLYLT  DV+LCVLPLFHI+SLNSVLLC+LRAG+ VLLMQKFEIG LLELIQRHRVSV
Sbjct: 236 NPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLLMQKFEIGTLLELIQRHRVSV 295

Query: 121 AAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE 180
           A VVPPLVLALAKNPMVAD+DLSSIR+VLSGAAPLGKELE+ALR+R+PQA+LGQGYGMTE
Sbjct: 296 AMVVPPLVLALAKNPMVADFDLSSIRLVLSGAAPLGKELEEALRNRMPQAVLGQGYGMTE 355

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           AGPVLSMCLGFAKQPF TKSGSCGTVVRNAELKV+DPETG SL +NQPGEICIRG QIMK
Sbjct: 356 AGPVLSMCLGFAKQPFQTKSGSCGTVVRNAELKVVDPETGRSLGYNQPGEICIRGQQIMK 415

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723189|ref|NP_001237270.1| 4-coumarate:CoA ligase isoenzyme 3 [Glycine max] gi|4038971|gb|AAC97389.1| 4-coumarate:CoA ligase isoenzyme 3 [Glycine max] gi|4038973|gb|AAC97599.1| 4-coumarate:CoA ligase isoenzyme 3 [Glycine max]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/240 (87%), Positives = 225/240 (93%)

Query: 1   NCLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE 60
           NCLHF+VLSEA+E   PEV I+PDD VA+PFSSGTTGLPKGVVLTHKSL TSVAQQVDGE
Sbjct: 184 NCLHFSVLSEANESDAPEVDIQPDDAVAMPFSSGTTGLPKGVVLTHKSLTTSVAQQVDGE 243

Query: 61  NPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSV 120
           NPNLYLT  DV+LCVLPLFHI+SLNSVLLC+LRAG+ VLLMQKFEIG LLELIQRHRVSV
Sbjct: 244 NPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLLMQKFEIGTLLELIQRHRVSV 303

Query: 121 AAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE 180
           A VVPPLVLALAKNPMVAD+DLSSIR+VLSGAAPLGKEL +ALR+RVPQA+LGQGYGMTE
Sbjct: 304 AMVVPPLVLALAKNPMVADFDLSSIRLVLSGAAPLGKELVEALRNRVPQAVLGQGYGMTE 363

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAEL+V+DPETG SL +NQPGEICIRG QIMK
Sbjct: 364 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELRVVDPETGRSLGYNQPGEICIRGQQIMK 423

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454787|ref|XP_002274994.1| PREDICTED: 4-coumarate--CoA ligase 2 [Vitis vinifera]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/240 (88%), Positives = 225/240 (93%)

Query: 1   NCLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE 60
           NC+HF+V+SEA+E ++PEV+I  DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE
Sbjct: 184 NCMHFSVVSEANESELPEVSINSDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE 243

Query: 61  NPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSV 120
           NPNL+LT  DVVLCVLPLFHIYSLNSVLLCSLRAGA VLLMQKFEIG LLELIQR+RVSV
Sbjct: 244 NPNLHLTPDDVVLCVLPLFHIYSLNSVLLCSLRAGAAVLLMQKFEIGTLLELIQRYRVSV 303

Query: 121 AAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE 180
           AAVVPPLVLALAKNPMV  +DLSSIRVVLSGAAPLGKELE ALRSRVPQA+LGQGYGMTE
Sbjct: 304 AAVVPPLVLALAKNPMVESFDLSSIRVVLSGAAPLGKELEAALRSRVPQAVLGQGYGMTE 363

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           AGPVLSMCL FAKQPFPTKSGSCGTVVRNAELKV+DPETG SL  NQPGEICIRG QIMK
Sbjct: 364 AGPVLSMCLAFAKQPFPTKSGSCGTVVRNAELKVVDPETGCSLGRNQPGEICIRGQQIMK 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805634|emb|CAN73910.1| hypothetical protein VITISV_031171 [Vitis vinifera]

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/240 (88%), Positives = 224/240 (93%)

Query: 1   NCLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE 60
           NC+HF+V SEA+E ++PEV+I  DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE
Sbjct: 162 NCMHFSVXSEANESELPEVSINSDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE 221

Query: 61  NPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSV 120
           NPNL+LT  DVVLCVLPLFHIYSLNSVLLCSLRAGA VLLMQKFEIG LLELIQR+RVSV
Sbjct: 222 NPNLHLTPDDVVLCVLPLFHIYSLNSVLLCSLRAGAAVLLMQKFEIGTLLELIQRYRVSV 281

Query: 121 AAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE 180
           AAVVPPLVLALAKNPMV  +DLSSIRVVLSGAAPLGKELE ALRSRVPQA+LGQGYGMTE
Sbjct: 282 AAVVPPLVLALAKNPMVESFDLSSIRVVLSGAAPLGKELEAALRSRVPQAVLGQGYGMTE 341

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           AGPVLSMCL FAKQPFPTKSGSCGTVVRNAELKV+DPETG SL  NQPGEICIRG QIMK
Sbjct: 342 AGPVLSMCLAFAKQPFPTKSGSCGTVVRNAELKVVDPETGCSLGRNQPGEICIRGQQIMK 401

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|76177061|gb|ABA40922.1| 4-coumaroyl CoA ligase [Camellia sinensis]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/240 (87%), Positives = 223/240 (92%)

Query: 1   NCLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE 60
           NCLHF+VLSEA+E +IP V+I+PDDPVALPFSSGTTGLPKGV+LTHKSLI+SVAQQVDGE
Sbjct: 183 NCLHFSVLSEANESEIPTVSIDPDDPVALPFSSGTTGLPKGVILTHKSLISSVAQQVDGE 242

Query: 61  NPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSV 120
           NPNL L   D+VLCVLPLFHIYSLNSVLLCSLRAG GVLLM KFEIGALLELIQRHRVSV
Sbjct: 243 NPNLRLKGEDMVLCVLPLFHIYSLNSVLLCSLRAGTGVLLMHKFEIGALLELIQRHRVSV 302

Query: 121 AAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE 180
           AAVVPPLVLALAKNPMV  +DLSSIR+VLSGAAPLGKELE+ALR+RVPQAI GQGYGMTE
Sbjct: 303 AAVVPPLVLALAKNPMVVTFDLSSIRMVLSGAAPLGKELEEALRARVPQAIFGQGYGMTE 362

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           AGPVLSMCL FAKQPFPTKSGSCGTVVRNAELKVIDPETG SL  N  GEICIRGPQIMK
Sbjct: 363 AGPVLSMCLAFAKQPFPTKSGSCGTVVRNAELKVIDPETGCSLGPNHSGEICIRGPQIMK 422

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722899|ref|NP_001236236.1| 4-coumarate--CoA ligase 2 [Glycine max] gi|225194703|gb|ACN81820.1| 4-coumarate:CoA ligase [Glycine max]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/240 (85%), Positives = 225/240 (93%)

Query: 1   NCLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE 60
           NCLHF+VLSEA+E  +PEV I PDD VA+PFSSGTTGLPKGV+LTHKSL TSVAQ++DGE
Sbjct: 176 NCLHFSVLSEANESDVPEVEIHPDDAVAMPFSSGTTGLPKGVILTHKSLTTSVAQKIDGE 235

Query: 61  NPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSV 120
           NPNLYLT  DV+LCVLPLFHI+SLNSVLLC+LRAG+ VLLMQKFEIG LLELIQRHRVSV
Sbjct: 236 NPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLLMQKFEIGTLLELIQRHRVSV 295

Query: 121 AAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE 180
           A VVPPLVLALAKNPMVAD+DLSSIR+VLSGAAPLGKELE+ALR+R+PQA+LGQGYGMTE
Sbjct: 296 AMVVPPLVLALAKNPMVADFDLSSIRLVLSGAAPLGKELEEALRNRMPQAVLGQGYGMTE 355

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           AGPVLSMCLGFAKQPF TKSGSCGTVVRNAELKV+DPETG SL +NQPGEICIRG QIMK
Sbjct: 356 AGPVLSMCLGFAKQPFQTKSGSCGTVVRNAELKVVDPETGRSLGYNQPGEICIRGQQIMK 415

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14289346|gb|AAK58909.1| 4-coumarate:CoA ligase 4 [Populus trichocarpa x Populus deltoides]

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/240 (87%), Positives = 224/240 (93%)

Query: 1   NCLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE 60
           NCLHF VL EA+E ++P V+I PDDPVALPFSSGTTGLPKGV+LTHKSLITSVAQQVDGE
Sbjct: 185 NCLHFNVLVEANESEMPTVSIHPDDPVALPFSSGTTGLPKGVILTHKSLITSVAQQVDGE 244

Query: 61  NPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSV 120
            PNLYL   DVVLCVLPLFHI+SLNSVLLCSLRAG+ VLLMQKFEIG+LLELIQ+H VSV
Sbjct: 245 IPNLYLKQDDVVLCVLPLFHIFSLNSVLLCSLRAGSAVLLMQKFEIGSLLELIQKHNVSV 304

Query: 121 AAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE 180
           AAVVPPLVLALAKNPMVA++DLSSIRVVLSGAAPLGKELE+ALRSRVPQAILGQGYGMTE
Sbjct: 305 AAVVPPLVLALAKNPMVANFDLSSIRVVLSGAAPLGKELEEALRSRVPQAILGQGYGMTE 364

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           AGPVLSMCL F+KQP PTKSGSCGTVVRNAELKVIDPETG+SL  NQPGEICIRG QIMK
Sbjct: 365 AGPVLSMCLAFSKQPLPTKSGSCGTVVRNAELKVIDPETGSSLGRNQPGEICIRGSQIMK 424

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2015003	561	4CL3 "4-coumarate:CoA ligase 3	1.0	0.427	0.747	1.1e-87
TAIR|locus:2094716	556	4CL2 "4-coumarate:CoA ligase 2	0.995	0.429	0.670	3.4e-84
TAIR|locus:2017602	561	4CL1 "4-coumarate:CoA ligase 1	0.995	0.426	0.665	2.8e-82
TAIR|locus:2094771	570	4CL5 "4-coumarate:CoA ligase 5	0.991	0.417	0.569	2e-72
DICTYBASE|DDB_G0284745	551	4cl2 "4-coumarate-CoA ligase"	0.958	0.417	0.397	1.9e-37
DICTYBASE|DDB_G0284831	551	4cl1 "4-coumarate-CoA ligase"	0.958	0.417	0.393	3e-37
UNIPROTKB|Q5LVA1	535	fadD "4-coumarate:CoA ligase"	0.895	0.401	0.379	2.1e-36
TIGR_CMR|SPO_0801	535	SPO_0801 "4-coumarate:CoA liga	0.895	0.401	0.379	2.1e-36
DICTYBASE|DDB_G0284743	551	4cl3 "4-coumarate-CoA ligase"	0.958	0.417	0.376	3e-34
TAIR|locus:2158559	562	AT5G63380 [Arabidopsis thalian	0.937	0.400	0.357	2.4e-33

TAIR|locus:2015003 4CL3 "4-coumarate:CoA ligase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
 Identities = 181/242 (74%), Positives = 196/242 (80%)

Query:     1 NCLHFTVLSEADE-DQIPE-VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVD 58
             NCL F+ L   DE +   E V I  DD  ALPFSSGTTGLPKGVVLTHKSLITSVAQQVD
Sbjct:   180 NCLPFSTLITDDETNPFQETVDIGGDDAAALPFSSGTTGLPKGVVLTHKSLITSVAQQVD 239

Query:    59 GENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRV 118
             G+NPNLYL + DV+LCVLPLFHIYSLNSVLL SLR+GA VLLM KFEIGALL+LIQRHRV
Sbjct:   240 GDNPNLYLKSNDVILCVLPLFHIYSLNSVLLNSLRSGATVLLMHKFEIGALLDLIQRHRV 299

Query:   119 SXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM 178
             +             KNP V  YDLSS+R VLSGAAPLGKEL+D+LR R+PQAILGQGYGM
Sbjct:   300 TIAALVPPLVIALAKNPTVNSYDLSSVRFVLSGAAPLGKELQDSLRRRLPQAILGQGYGM 359

Query:   179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQI 238
             TEAGPVLSM LGFAK+P PTKSGSCGTVVRNAELKV+  ET  SL +NQPGEICIRG QI
Sbjct:   360 TEAGPVLSMSLGFAKEPIPTKSGSCGTVVRNAELKVVHLETRLSLGYNQPGEICIRGQQI 419

Query:   239 MK 240
             MK
Sbjct:   420 MK 421

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0010584 "pollen exine formation" evidence=IMP

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 163/243 (67%), Positives = 194/243 (79%)

Query:     1 NCLHFTVLSEADE---DQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQV 57
             NCL F+ L++++E   D IPE  I P+D VALPFSSGTTGLPKGV+LTHK L+TSVAQQV
Sbjct:   170 NCLRFSELTQSEEPRVDSIPE-KISPEDVVALPFSSGTTGLPKGVMLTHKGLVTSVAQQV 228

Query:    58 DGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHR 117
             DGENPNLY    DV+LCVLP+FHIY+LNS++LCSLR GA +L+M KFEI  LLE IQR +
Sbjct:   229 DGENPNLYFNRDDVILCVLPMFHIYALNSIMLCSLRVGATILIMPKFEITLLLEQIQRCK 288

Query:   118 VSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG 177
             V+             K+P    YDLSS+R+V SGAAPLGKELEDA+ ++ P A LGQGYG
Sbjct:   289 VTVAMVVPPIVLAIAKSPETEKYDLSSVRMVKSGAAPLGKELEDAISAKFPNAKLGQGYG 348

Query:   178 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQ 237
             MTEAGPVL+M LGFAK+PFP KSG+CGTVVRNAE+K++DP+TG SLP N+PGEICIRG Q
Sbjct:   349 MTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKILDPDTGDSLPRNKPGEICIRGNQ 408

Query:   238 IMK 240
             IMK
Sbjct:   409 IMK 411

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2017602 4CL1 "4-coumarate:CoA ligase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 161/242 (66%), Positives = 189/242 (78%)

Query:     2 CLHFTVLSEADEDQ---IPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVD 58
             CL FT L+++  +    I  V I PDD VALP+SSGTTGLPKGV+LTHK L+TSVAQQVD
Sbjct:   177 CLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVD 236

Query:    59 GENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRV 118
             GENPNLY  + DV+LCVLP+FHIY+LNS++LC LR GA +L+M KFEI  LLELIQR +V
Sbjct:   237 GENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKV 296

Query:   119 SXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM 178
             +             K+     YDLSSIRVV SGAAPLGKELEDA+ ++ P A LGQGYGM
Sbjct:   297 TVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGM 356

Query:   179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQI 238
             TEAGPVL+M LGFAK+PFP KSG+CGTVVRNAE+K++DP+TG SL  NQPGEICIRG QI
Sbjct:   357 TEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQI 416

Query:   239 MK 240
             MK
Sbjct:   417 MK 418

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA;TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2094771 4CL5 "4-coumarate:CoA ligase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 136/239 (56%), Positives = 184/239 (76%)

Query:     2 CLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGEN 61
             C+ FT L++ADE ++ +  I P+D VA+P+SSGTTGLPKGV++THK L+TS+AQ+VDGEN
Sbjct:   188 CVSFTELTQADETELLKPKISPEDTVAMPYSSGTTGLPKGVMITHKGLVTSIAQKVDGEN 247

Query:    62 PNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXX 121
             PNL  T  DV+LC LP+FHIY+L++++L ++R GA +L++ +FE+  ++ELIQR++V+  
Sbjct:   248 PNLNFTANDVILCFLPMFHIYALDALMLSAMRTGAALLIVPRFELNLVMELIQRYKVTVV 307

Query:   122 XXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181
                        K+P    YDLSS+R++LSGAA L KELEDA+R + P AI GQGYGMTE+
Sbjct:   308 PVAPPVVLAFIKSPETERYDLSSVRIMLSGAATLKKELEDAVRLKFPNAIFGQGYGMTES 367

Query:   182 GPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
             G V +  L FAK PF TKSG+CGTV+RNAE+KV+D ETG SLP N+ GEIC+RG Q+MK
Sbjct:   368 GTV-AKSLAFAKNPFKTKSGACGTVIRNAEMKVVDTETGISLPRNKSGEICVRGHQLMK 425

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009699 "phenylpropanoid biosynthetic process" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

DICTYBASE|DDB_G0284745 4cl2 "4-coumarate-CoA ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 95/239 (39%), Positives = 136/239 (56%)

Query:     3 LHFTVLSEADEDQIPEVAIE-PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGEN 61
             + F  L   +    P V I+   D   +PFSSGTTGL KGV L+H +L+++  Q    E 
Sbjct:   175 MSFNQLINNNGKDYPIVRIDLKKDTAIIPFSSGTTGLFKGVCLSHHNLVSNTHQTQTVET 234

Query:    62 PNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXX 121
              N Y  N D V+  LP FHIY L + L+  ++ G  V+++ KFE    L+LIQ+++V+  
Sbjct:   235 TN-YKKN-DTVMGQLPFFHIYGLMTYLILMVKQGHCVVILPKFEFVRFLDLIQKYKVAIS 292

Query:   122 XXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVP-QAILGQGYGMTE 180
                        K+P+V  +DLSS+R + SGAAPL +E+ED ++ R   + I+ QGYG TE
Sbjct:   293 FIVPPIAIMFAKSPIVDKFDLSSLRTLFSGAAPLSREVEDLIKERFKGKLIIKQGYGATE 352

Query:   181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
               P    C  F       KSGS G ++ N  +K+I PETG +L   + GEICI+GP +M
Sbjct:   353 LSPA---C--FVIPSGLIKSGSAGILLPNQLVKIISPETGENLGMGEKGEICIKGPNVM 406

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016874 "ligase activity" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

DICTYBASE|DDB_G0284831 4cl1 "4-coumarate-CoA ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 94/239 (39%), Positives = 135/239 (56%)

Query:     3 LHFTVLSEADEDQIPEVAIEPD-DPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGEN 61
             + F  L   +    P V I+P  D   +PFSSGTTGL KGV L+H +++++  Q    E 
Sbjct:   175 MSFNQLINNNGKDYPIVRIDPKKDTAIIPFSSGTTGLFKGVCLSHHNIVSNTYQTQTIET 234

Query:    62 PNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXX 121
              + Y  N D V+ +LP FHIY L   L+  ++ G  V+++ KFE    LELIQ+++V+  
Sbjct:   235 -STYKKN-DTVMGILPFFHIYGLMLFLMLMVKQGHRVVVLPKFEPVRFLELIQKYKVAIS 292

Query:   122 XXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVP-QAILGQGYGMTE 180
                        K+P+V  +DLSS+R + SGAAPL  E+ED ++ R   + ++ QGYG TE
Sbjct:   293 FIVPPVAIMFAKSPIVDKFDLSSLRTLFSGAAPLSSEVEDLIKERFKGRLVIKQGYGATE 352

Query:   181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
               P    C  F       KSGS G ++ N   K+I PETG +L   + GEICI+GP +M
Sbjct:   353 LSPA---C--FVIPSGLVKSGSAGILLPNQLAKIISPETGENLGMGEKGEICIKGPNVM 406

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016874 "ligase activity" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q5LVA1 fadD "4-coumarate:CoA ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 87/229 (37%), Positives = 132/229 (57%)

Query:    13 EDQIP-EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDV 71
             E Q P +VA   +  V LP+SSGTTG+PKGV+LTH++L+ ++ Q +   +    L  G++
Sbjct:   176 EHQAPVDVA---EHVVVLPYSSGTTGMPKGVMLTHRNLVVNIDQTLLPAD----LNPGEM 228

Query:    72 VLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXX 131
                 LP FHIY L  ++   L AG G++ + +F++   L+ + R+R              
Sbjct:   229 TTAFLPFFHIYGLQVLMNIYLTAGGGLVTLPRFDLEQYLDCVIRYRTPRLWIVPPVALAL 288

Query:   132 XKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGF 191
              K+P+VA+YDLS +  V   AAPLG+++ + L  R+  A + QGYGMTE  PV  +    
Sbjct:   289 AKHPVVANYDLSCVEQVFCAAAPLGRDVAEGLGERI-NARVNQGYGMTELSPVSHVSPHG 347

Query:   192 AKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
               +P     G+ G  + N E ++IDPETG  LP  + GE+ +RGPQ+MK
Sbjct:   348 EGKP-----GASGVAISNTECRIIDPETGTDLPLGEDGELWVRGPQVMK 391

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TIGR_CMR|SPO_0801 SPO_0801 "4-coumarate:CoA ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 87/229 (37%), Positives = 132/229 (57%)

Query:    13 EDQIP-EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDV 71
             E Q P +VA   +  V LP+SSGTTG+PKGV+LTH++L+ ++ Q +   +    L  G++
Sbjct:   176 EHQAPVDVA---EHVVVLPYSSGTTGMPKGVMLTHRNLVVNIDQTLLPAD----LNPGEM 228

Query:    72 VLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXX 131
                 LP FHIY L  ++   L AG G++ + +F++   L+ + R+R              
Sbjct:   229 TTAFLPFFHIYGLQVLMNIYLTAGGGLVTLPRFDLEQYLDCVIRYRTPRLWIVPPVALAL 288

Query:   132 XKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGF 191
              K+P+VA+YDLS +  V   AAPLG+++ + L  R+  A + QGYGMTE  PV  +    
Sbjct:   289 AKHPVVANYDLSCVEQVFCAAAPLGRDVAEGLGERI-NARVNQGYGMTELSPVSHVSPHG 347

Query:   192 AKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
               +P     G+ G  + N E ++IDPETG  LP  + GE+ +RGPQ+MK
Sbjct:   348 EGKP-----GASGVAISNTECRIIDPETGTDLPLGEDGELWVRGPQVMK 391

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

DICTYBASE|DDB_G0284743 4cl3 "4-coumarate-CoA ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 373 (136.4 bits), Expect = 3.0e-34, P = 3.0e-34
 Identities = 90/239 (37%), Positives = 133/239 (55%)

Query:     3 LHFTVLSEADEDQIPEVAIE-PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGEN 61
             + F  L+  +    P V I+   D   +PFSSGTTGL KGV L+H +L+++  Q    E 
Sbjct:   175 MSFNQLTNNNGKDYPIVRIDLTKDTAIIPFSSGTTGLFKGVCLSHYNLVSNTYQTQTIET 234

Query:    62 PNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXX 121
              + Y  N D V+ VLP FH + L   ++  ++ G  ++ + KFE    LELI++++V+  
Sbjct:   235 -STYKKN-DSVIGVLPFFHSFGLMLHIMLMVKQGYRIVTLPKFEPVRFLELIKKYKVAMS 292

Query:   122 XXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVP-QAILGQGYGMTE 180
                        K+P+V  +DLSS+R +  GAAPLG E+ED ++ R   + ++ QGYG TE
Sbjct:   293 FIVPPIAIMFAKSPIVDKFDLSSLRTLFCGAAPLGSEIEDLIKERFKGRLVIKQGYGATE 352

Query:   181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
               P    C  F       KSGS GT++ N   K+I  ETG +L   + GEICI+GP +M
Sbjct:   353 LSPC---C--FVTPNGLVKSGSSGTLLPNLLAKIISSETGENLGMGEKGEICIKGPNVM 406

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016874 "ligase activity" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TAIR|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 2.4e-33, P = 2.4e-33
 Identities = 85/238 (35%), Positives = 137/238 (57%)

Query:     8 LSEADEDQI-P-EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLI--TSVAQQVDGENPN 63
             L+ +D   + P +V +   DP A+ FSSGTTG  KGV+LTH++LI  T+V+ Q   ++P 
Sbjct:   186 LNRSDSSSVNPFQVQVNQSDPAAILFSSGTTGRVKGVLLTHRNLIASTAVSHQRTLQDPV 245

Query:    64 LYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXX 123
              Y   G   L  LPLFH++    +++ ++  G  ++L+ +FE+ A+ + +++++V+    
Sbjct:   246 NYDRVG---LFSLPLFHVFGF-MMMIRAISLGETLVLLGRFELEAMFKAVEKYKVTGMPV 301

Query:   124 XXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA-G 182
                      K+ +   YDL S+R +  G APLGK++ +  + + P   + QGYG+TE+ G
Sbjct:   302 SPPLIVALVKSELTKKYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDIVQGYGLTESSG 361

Query:   183 PVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
             P  S    F  +    K GS G +  N E K++DP TG SLP  + GE+ +RGP IMK
Sbjct:   362 PAAST---FGPEEM-VKYGSVGRISENMEAKIVDPSTGESLPPGKTGELWLRGPVIMK 415

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P31687	4CL2_SOYBN	6, ., 2, ., 1, ., 1, 2	0.8666	1.0	0.4270	yes	no
Q42982	4CL2_ORYSJ	6, ., 2, ., 1, ., 1, 2	0.775	0.9958	0.4200	yes	no
Q9S777	4CL3_ARATH	6, ., 2, ., 1, ., 1, 2	0.7851	1.0	0.4278	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	0.0
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	1e-111
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	2e-89
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	7e-65
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	4e-63
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	3e-62
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	4e-60
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	5e-58
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	7e-57
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	8e-52
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	1e-49
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	6e-48
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	2e-45
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	2e-41
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	9e-41
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	4e-40
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	5e-40
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	3e-39
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	4e-39
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	3e-38
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	6e-38
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	1e-37
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	1e-37
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	2e-36
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	3e-35
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	8e-35
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	2e-34
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	5e-34
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	6e-34
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	2e-33
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	1e-32
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	1e-31
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-31
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	3e-30
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	3e-29
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	5e-29
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	8e-29
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	5e-28
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	5e-28
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	2e-27
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	3e-27
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	3e-27
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	3e-27
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	5e-27
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	5e-27
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	6e-27
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-26
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	3e-26
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	5e-26
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	2e-25
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	3e-25
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	4e-25
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	8e-25
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	6e-24
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	1e-23
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	4e-23
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	6e-23
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	1e-22
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	2e-22
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	3e-22
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	4e-22
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	5e-22
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	7e-22
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	7e-22
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	7e-22
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	9e-22
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	1e-21
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	4e-21
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	8e-21
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	9e-21
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	1e-20
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	5e-20
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	7e-20
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	7e-20
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	7e-20
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	1e-19
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	4e-19
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	9e-19
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	2e-18
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	3e-18
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	3e-18
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	5e-18
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	4e-17
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	4e-17
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	2e-16
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	3e-16
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	3e-16
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	7e-16
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	1e-15
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	2e-15
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	4e-15
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	1e-14
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	2e-14
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	2e-14
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	2e-14
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	2e-14
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	2e-14
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	5e-14
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-13
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	1e-13
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	2e-13
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	2e-13
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	3e-13
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	4e-13
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	8e-13
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	1e-12
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-12
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-12
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	2e-12
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	3e-12
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	5e-12
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	8e-12
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	9e-12
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-11
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	1e-11
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	3e-11
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	3e-11
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	4e-11
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	5e-11
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	7e-11
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	1e-10
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	2e-10
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	2e-10
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	3e-10
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	4e-10
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	4e-10
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	5e-10
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	8e-10
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	2e-09
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	2e-09
COG1541	438	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme	3e-09
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	4e-09
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	6e-09
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	7e-09
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	7e-09
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-08
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	1e-08
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	2e-08
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	3e-08
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	3e-08
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	4e-08
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-07
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	2e-07
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	3e-07
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	3e-07
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	4e-07
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	4e-07
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	4e-07
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	6e-07
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	6e-07
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	8e-07
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	1e-06
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	6e-06
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	7e-06
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	1e-05
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	2e-05
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	2e-05
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	4e-05
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	6e-05
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	8e-05
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-04
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	2e-04
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	3e-04
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-04
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	4e-04
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	6e-04
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	9e-04
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	0.001

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  515 bits (1329), Expect = 0.0
 Identities = 188/240 (78%), Positives = 218/240 (90%)

Query: 1   NCLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE 60
            CLHF+ L++ADE+++PEV I PDD VALP+SSGTTGLPKGV+LTHK L+TSVAQQVDGE
Sbjct: 156 GCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGE 215

Query: 61  NPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSV 120
           NPNLY  + DV+LCVLP+FHIYSLNSVLLC LR GA +L+M KFEIGALLELIQRH+V++
Sbjct: 216 NPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTI 275

Query: 121 AAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE 180
           A  VPP+VLA+AK+P+V  YDLSSIR+VLSGAAPLGKELEDA R+++P A+LGQGYGMTE
Sbjct: 276 APFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTE 335

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           AGPVL+MCL FAK+PFP KSGSCGTVVRNAELK++DPETGASLP NQPGEICIRGPQIMK
Sbjct: 336 AGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMK 395

Length = 537

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  328 bits (842), Expect = e-111
 Identities = 130/240 (54%), Positives = 165/240 (68%), Gaps = 5/240 (2%)

Query: 1   NCLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE 60
                  L  ADE + P V I+ DD  ALP+SSGTTG  KGV+LTH++LI +VAQ V GE
Sbjct: 135 GSAAIDDLLFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAGE 194

Query: 61  NPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSV 120
            PN      DV LCVLP+FHIY L  +LL  LR GA V++M +F++   L  I++++V+ 
Sbjct: 195 GPNF--DREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRFDLEKFLAAIEKYKVTH 252

Query: 121 AAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE 180
             VVPP+VLAL K+P+V  YDLSS++ + SGAAPLGKEL +A R+R P   LGQGYGMTE
Sbjct: 253 LPVVPPIVLALVKHPIVDKYDLSSLKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTE 312

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           + PV +MC    K P   K GS G +V N E K++DPETG SLP NQPGE+ +RGPQ+MK
Sbjct: 313 SSPVTTMCPVPEKDP---KPGSVGRLVPNVEAKIVDPETGESLPPNQPGELWVRGPQVMK 369

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  272 bits (697), Expect = 2e-89
 Identities = 106/236 (44%), Positives = 151/236 (63%), Gaps = 7/236 (2%)

Query: 5   FTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNL 64
              L   DE +   +    DD  AL +SSGTTGLPKGV+L+HK++I +++Q  D    N 
Sbjct: 127 EPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKGN- 185

Query: 65  YLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVV 124
             ++ DVVL  LP +H Y L + L   L  GA V++M KF+    L+LI++++V+   +V
Sbjct: 186 PDSSNDVVLTFLPFYHAYGLTTTLASLLC-GATVIIMPKFDSETFLKLIEKYKVTSLFLV 244

Query: 125 PPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPV 184
           PP+ +ALAK+P+V  YDLSS+RV+ SGAAPL KEL++ LR R P   + QGYGMTE GP 
Sbjct: 245 PPIAVALAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPA 304

Query: 185 LSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
            ++     ++P     GS G +V N E K++D + G SL  N+ GE+C++GPQIMK
Sbjct: 305 TTLTPPGDEKP-----GSVGRLVPNVEAKIVDEDGGKSLGPNERGELCVKGPQIMK 355

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  204 bits (522), Expect = 7e-65
 Identities = 89/221 (40%), Positives = 134/221 (60%), Gaps = 13/221 (5%)

Query: 23  PDDPVALPFSSGTTGLPKGVVLTHKSLIT---SVAQQVDGENPNLYLTNGDVVLCVLPLF 79
           PDDP  + ++SGTTG PKG +LTH++++    S+A++       L LT GD  L  +PLF
Sbjct: 1   PDDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARR-------LGLTEGDRTLVPVPLF 53

Query: 80  HIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVAD 139
           H++ L   +L SL AGA ++LM+KF+ GA L LI+R R++    VP + +AL ++P    
Sbjct: 54  HVFGLVLGVLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPDFDK 113

Query: 140 YDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTK 199
           +DLSS+R  +SG AP+  EL   +R   P A +  GYGMTE   V +   G    P+  +
Sbjct: 114 FDLSSLRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDD--PYEDR 171

Query: 200 SGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
            G+ G  +   E+K++DP+ G  +P  + GEIC+RG  +MK
Sbjct: 172 PGTVGRPLPGVEVKIVDPDGGE-VPPGEVGEICVRGYSVMK 211

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  202 bits (515), Expect = 4e-63
 Identities = 91/240 (37%), Positives = 126/240 (52%), Gaps = 11/240 (4%)

Query: 3   LHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENP 62
           L    L      + P   ++PDD   + ++SGTTG PKGV+LTH++L+   A   +    
Sbjct: 110 LLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAE---- 165

Query: 63  NLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFE--IGALLELIQRHRVSV 120
              LT GD VL +LPL    S+   +   L AG  ++L+ KF      LL+LI++++V+V
Sbjct: 166 RFGLTPGDRVLLLLPLHFDGSV-WEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTV 224

Query: 121 AAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE 180
              VP L+  L K P    YDLSS+R+VLSG  PL  EL   LR R     L  GYG TE
Sbjct: 225 LYGVPTLLRLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTE 284

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
              V +  L         K GS G  +   E+KV+D E G  +P  + GE+CIRGP + +
Sbjct: 285 TTVVATANLPGDP---EVKPGSIGRPLPGVEVKVLDEE-GEPVPPGEVGELCIRGPGVAR 340

Length = 412

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  197 bits (504), Expect = 3e-62
 Identities = 87/217 (40%), Positives = 131/217 (60%), Gaps = 10/217 (4%)

Query: 24  DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS 83
           DDP  + ++SGTTG PKGV+LTH++L+ +    + G    + L+ GDV L   PL+H  +
Sbjct: 1   DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAG----VDLSPGDVYLLAAPLYHA-A 55

Query: 84  LNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLS 143
               LL +L AG  V+LM KF+  A+L+LI+RHRV+   +VP +   L + P  A YDLS
Sbjct: 56  GGLFLLPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARYDLS 115

Query: 144 SIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSC 203
           S+R+++ GAAP+  EL+ A+       +  QGYGMTE GP  ++    + + +  K GS 
Sbjct: 116 SLRLIIYGAAPMPAELKRAMI-EWFGPVFVQGYGMTETGPTTTLL---SPEDWLRKLGSV 171

Query: 204 GTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           G  V   E++++D + G  LP  + GEI +RGP +M 
Sbjct: 172 GRPVPGVEVRIVDED-GRELPPGEVGEIVVRGPAVMA 207

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  195 bits (499), Expect = 4e-60
 Identities = 85/239 (35%), Positives = 125/239 (52%), Gaps = 8/239 (3%)

Query: 2   CLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGEN 61
            + F     +       V + PDD   L ++ GTTG+PKG +LTH++L+ +  QQ+    
Sbjct: 103 AISFEDALASGAPLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLV-ANVQQIAAWV 161

Query: 62  PNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVA 121
            +L     D  L  LPLFHI+ L   +L  LR GA  +L+  F    +L+ I+R+R ++ 
Sbjct: 162 KDL-REGEDRFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIF 220

Query: 122 AVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181
             VP L  AL  +P    YD SS+R+ +SG APL  E+ +        A L +GYG+TE 
Sbjct: 221 PGVPTLYNALLNHPEFKKYDFSSLRLCISGGAPLPVEVAERFE-EKTGAPLVEGYGLTET 279

Query: 182 GPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
            PV +            K GS G  +   E+K++D E G  LP  + GE+ +RGPQ+MK
Sbjct: 280 SPVTT----VNPLDGERKPGSIGLPLPGTEVKIVDDE-GNELPPGEVGELVVRGPQVMK 333

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  191 bits (488), Expect = 5e-58
 Identities = 91/238 (38%), Positives = 133/238 (55%), Gaps = 9/238 (3%)

Query: 6   TVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLY 65
            + +E          ++PDD   L ++SGTTGLPKGVVLTH++L+ + A           
Sbjct: 153 ALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGG--G 210

Query: 66  LTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM--QKFEIGALLELIQRHRVSVAAV 123
           LT  DVVL  LPLFHI+ L   LL  L  G  ++L+  + F+   +L LI++++V+V + 
Sbjct: 211 LTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSG 270

Query: 124 VPPLVLALAKNPMVADYDLSS-IRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAG 182
           VP  +  L  NP   D DLSS +R+VLSG APL  EL +    R     + +GYG+TE  
Sbjct: 271 VPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETS 330

Query: 183 PVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           PV+++           K GS G  +   E++++DP+ G  LP  + GEI +RGP +MK
Sbjct: 331 PVVTINPPDDLL---AKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMK 384

Length = 534

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  184 bits (468), Expect = 7e-57
 Identities = 88/217 (40%), Positives = 123/217 (56%), Gaps = 11/217 (5%)

Query: 25  DPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSL 84
           DP  + ++SGTTG PKGVVL+H++L+ +           + LT GDV+L VLPLFH+   
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQ----AIGLTEGDVLLSVLPLFHVVGG 56

Query: 85  NSVLLCSLRAGAGVLLMQKFE-IGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLS 143
            S LL +L AG  V+L + F    + LELI+++RV+V   VP L  ALAK      YDLS
Sbjct: 57  GSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLS 116

Query: 144 SIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSC 203
           S+R+++SG  PL  EL +      P A + +GYG+TE   V S            K G+ 
Sbjct: 117 SLRLLISGGEPLSPELLERFE-ERPGAPILEGYGLTETSVVTSTNPDSE----LKKPGTV 171

Query: 204 GTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           G  V   E++V+D E    LP  + GE+ +RGP +MK
Sbjct: 172 GRPVPGVEVRVVDEEGKP-LPPGEVGELVVRGPWVMK 207

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  175 bits (445), Expect = 8e-52
 Identities = 72/234 (30%), Positives = 122/234 (52%), Gaps = 8/234 (3%)

Query: 7   VLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYL 66
            L+  D  +     ++PDD   + F+SGTTG PKG +LTH+ L+++ A   +     L L
Sbjct: 150 FLAAGDPAER-APEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAE----YLGL 204

Query: 67  TNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPP 126
           T GD  L   P FH++   + +   L  GA +L +  F+   +  LI+  R++V    P 
Sbjct: 205 TEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPT 264

Query: 127 LVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLS 186
           +  +L ++P  +  DLSS+R+ ++GAA +   L +   S +   I+  GYG++EA  V +
Sbjct: 265 MYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTT 324

Query: 187 MCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
                      T +G+ GT +   E K+++   G  +P  + GE+ +RGP +MK
Sbjct: 325 FNR--LDDDRKTVAGTIGTAIAGVENKIVNEL-GEEVPVGEVGELLVRGPNVMK 375

Length = 513

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  167 bits (426), Expect = 1e-49
 Identities = 75/222 (33%), Positives = 115/222 (51%), Gaps = 16/222 (7%)

Query: 22  EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 81
           E DD   +P++SGTTGLPKG + TH++++ + A           LT   V+L  LPLFH+
Sbjct: 82  ELDDVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSG----LTPDSVLLAFLPLFHV 137

Query: 82  YSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYD 141
             +   +   +  GA ++L+ +++  A    I+R+RV+    +  +V+ L  +P  ADYD
Sbjct: 138 AGMQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLAHPRFADYD 197

Query: 142 LSSIRVVLSGAAPLGKELEDALRSRVPQA---ILGQGYGMTEAGPVLSMCLGFAKQPFPT 198
           LSS++VV  G A L      A+  R+      +  +GYG+TE             +P   
Sbjct: 198 LSSLKVVGGGGAALPP----AVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPKP--- 250

Query: 199 KSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
                G  V   + +VIDPETG  LP  + GEI +RGPQ+ K
Sbjct: 251 --QCLGIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFK 290

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  164 bits (419), Expect = 6e-48
 Identities = 82/242 (33%), Positives = 124/242 (51%), Gaps = 12/242 (4%)

Query: 3   LHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENP 62
             +  L  A  D      I+ +D  A+ ++SGTTG PKGVVL+H++L             
Sbjct: 146 GEYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAW--- 202

Query: 63  NLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAA 122
            L L+  DV L ++P+FH+++     L +L AGA  ++ ++F+   LL+LI+  RV+   
Sbjct: 203 -LKLSRDDVYLVIVPMFHVHAWGLPYL-ALMAGAKQVIPRRFDPENLLDLIETERVTFFF 260

Query: 123 VVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAG 182
            VP +   L K P     D SS+R+V+ G A L   L    + +     L QGYGMTE  
Sbjct: 261 AVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKF-GIDLVQGYGMTETS 319

Query: 183 PVLSMCLGFAKQ--PFPTKSGSCGTVVRNAELKVIDPETGASLPHN--QPGEICIRGPQI 238
           PV+S  L    Q     TK  S G  +   E +++D + G  LP +  + GEI +RGP +
Sbjct: 320 PVVS-VLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDD-GDELPPDGGEVGEIIVRGPWL 377

Query: 239 MK 240
           M+
Sbjct: 378 MQ 379

Length = 521

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score =  158 bits (401), Expect = 2e-45
 Identities = 89/239 (37%), Positives = 134/239 (56%), Gaps = 8/239 (3%)

Query: 7   VLSEADE--DQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNL 64
           +L  AD   D      I   D  ALPFSSGTTG+ KGV+LTH++L+ ++   +    P +
Sbjct: 165 LLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEM 224

Query: 65  YLTNGDVV-LCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAV 123
               G VV L ++P FHIY +  +   +LR    V++M +FE+   L  +    VS A +
Sbjct: 225 I---GQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPI 281

Query: 124 VPPLVLALAKNPMVADYDLS--SIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181
           VPP++L L KNP+V ++DLS   ++ +++ AAPL  EL  A  ++ P   + + YG+TE 
Sbjct: 282 VPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEH 341

Query: 182 GPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
             +        K     K  S G ++ N E+K IDP+TG SLP N PGE+C+R   +M+
Sbjct: 342 SCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQ 400

Length = 546

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  147 bits (374), Expect = 2e-41
 Identities = 77/245 (31%), Positives = 115/245 (46%), Gaps = 52/245 (21%)

Query: 17  PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVL 76
           P     PDD   LP++SGTTG+PKG + TH++++ +    V   N     T   VVL VL
Sbjct: 183 PPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSN----STPESVVLAVL 238

Query: 77  PLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPM 136
           PLFH+  +   +   + AGA V+LM +++  A   LI+R+RV+    +P +V+    +P 
Sbjct: 239 PLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPG 298

Query: 137 VADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ------------GYGMTE-AGP 183
           +A+ DLSS+R +  G A +            P+A+  +            GYG+TE    
Sbjct: 299 LAERDLSSLRYIGGGGAAM------------PEAV-AERLKELTGLDYVEGYGLTETMAQ 345

Query: 184 VLS--------MCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRG 235
             S         CLG                    + +VIDPET   LP  + GEI + G
Sbjct: 346 THSNPPDRPKLQCLGIP--------------TFGVDARVIDPETLEELPPGEVGEIVVHG 391

Query: 236 PQIMK 240
           PQ+ K
Sbjct: 392 PQVFK 396

Length = 546

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  146 bits (369), Expect = 9e-41
 Identities = 85/236 (36%), Positives = 140/236 (59%), Gaps = 16/236 (6%)

Query: 10  EADEDQIPEVAIEPDDPVAL-PFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTN 68
           E + +   EV  +P++ +AL  ++ GTTG PKGV+LTHK+L+++    V       +L N
Sbjct: 191 EKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQ------WLYN 244

Query: 69  ----GDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVV 124
                +VVL VLP FH+Y + +V+  S+  G  ++L+ KF++  + E I++H+V++    
Sbjct: 245 CKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGA 304

Query: 125 PPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPV 184
           P + +AL  +P++ +YD+SSIR  +SG+APL  E+++     V    L +GYG+TE+ PV
Sbjct: 305 PTIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEKFE-TVTGGKLVEGYGLTESSPV 363

Query: 185 LSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
                 + K+      GS G    + E  ++  ETG +LP  + GEI ++GPQIMK
Sbjct: 364 THSNFLWEKR----VPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMK 415

Length = 563

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  143 bits (363), Expect = 4e-40
 Identities = 70/224 (31%), Positives = 99/224 (44%), Gaps = 18/224 (8%)

Query: 18  EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLP 77
           E+  E  D      S GTTGLPK +  TH   + S     +       L  G V L VLP
Sbjct: 133 ELLEELPDVALFQLSGGTTGLPKLIPRTHNDYLYSARASAE----ACGLDPGTVYLAVLP 188

Query: 78  LFHIYSLNSV-LLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPM 136
             H ++L+S  LL +L AG  V+L           LI+R +V+  A+VP L+    +   
Sbjct: 189 AAHNFTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWLEAAE 248

Query: 137 VADYDLSSIRVVLSGAAPLGKELEDALRSRVPQA---ILGQGYGMTEAGPVLSMCLGFAK 193
               DLSS+RV+  G AP    L   L  RV +     L Q +GM E    L        
Sbjct: 249 WDQADLSSLRVIQVGGAP----LSPELARRVEERLGCPLQQVFGMAEG---LVNYTRLDD 301

Query: 194 QPFPTKSGSCGTVVRNA-ELKVIDPETGASLPHNQPGEICIRGP 236
            P      + G  +  A E++++D + G  +P  + GE+  RGP
Sbjct: 302 PPDVIM-RTQGRPISPADEIRIVDDQ-GEPVPPGEVGELLTRGP 343

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  140 bits (355), Expect = 5e-40
 Identities = 78/221 (35%), Positives = 105/221 (47%), Gaps = 15/221 (6%)

Query: 23  PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIY 82
           PDDP  +  +SGTTG PKGV LTHK+L+ S             LT  D  L V+PLFHI+
Sbjct: 1   PDDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHK----LTPSDRCLNVMPLFHIH 56

Query: 83  SLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYD- 141
            L   LL +L AG  V+   KF      + I ++RV+  + VP +   L K         
Sbjct: 57  GLIVSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKP 116

Query: 142 LSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSG 201
              +R + S +APL   + D L  R    +L + YGMTEA   +      A  P P    
Sbjct: 117 PPRLRFIRSASAPLPPAVLDRLEKRFGVPVL-EAYGMTEAAHQI------ASNPLPPLVR 169

Query: 202 SCGTV--VRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
             G+V      E+ ++D + G  LP  Q GEI IRGP +  
Sbjct: 170 KPGSVGRPAGVEVAILDDD-GRPLPPGQEGEIVIRGPNVTA 209

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score =  141 bits (358), Expect = 3e-39
 Identities = 93/240 (38%), Positives = 141/240 (58%), Gaps = 9/240 (3%)

Query: 5   FTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNL 64
           F  L + D D +P+  I+ DD  A+ +SSGTTG  KGVVLTH++LI  V   V  E  + 
Sbjct: 179 FYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFE-ASQ 237

Query: 65  YLTNG--DVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAA 122
           Y   G  +V L  LP+FHIY L+  ++  L  G+ +++M++F+   ++++I R +V+   
Sbjct: 238 YEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFP 297

Query: 123 VVPPLVLALAKNPM-VADYDLSSIRVVLSGAAPL-GKELEDALRSRVPQAILGQGYGMTE 180
           VVPP+++AL K    V    L S++ V  GAAPL GK ++D +++ +P     QGYGMTE
Sbjct: 298 VVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQT-LPHVDFIQGYGMTE 356

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           +  V +   GF  +   +K  S G +  N + KV+D  TG  LP    GE+ I+GP +MK
Sbjct: 357 STAVGTR--GFNTEKL-SKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMK 413

Length = 560

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  139 bits (353), Expect = 4e-39
 Identities = 75/218 (34%), Positives = 109/218 (50%), Gaps = 9/218 (4%)

Query: 22  EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 81
            PDD   L ++SGTTG PKGV+ TH +L+  V   V+     L LT  DVVL   PL HI
Sbjct: 91  MPDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVE----RLGLTPDDVVLMPSPLAHI 146

Query: 82  YSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYD 141
                 L   L  GA V+L  +++    LELI+ H V+      P +  L      A  D
Sbjct: 147 TGFLYGLELPLLLGATVVLQDRWDPARALELIREHGVTFTMGATPFLADLLAAADAAGPD 206

Query: 142 LSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSG 201
           L S+RV L G AP+ +EL       +   ++ + YGMTE   V    +G    P   ++ 
Sbjct: 207 LPSLRVFLCGGAPVPRELARRAAEALGAKVV-RAYGMTEVPLV---TVGTPDDPDDKRAA 262

Query: 202 SCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
           + G  V   E++++D + G  +P  + GE+ +RGPQ+ 
Sbjct: 263 TDGRPVPGVEVRIVDDD-GNDVPPGEEGELQVRGPQLF 299

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  137 bits (347), Expect = 3e-38
 Identities = 70/219 (31%), Positives = 109/219 (49%), Gaps = 13/219 (5%)

Query: 25  DPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSL 84
           DP  + ++SGTTG PKGVVLTH +L  +    V+        T  DV+L  LPL H++ L
Sbjct: 89  DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWR----WTASDVLLHALPLHHVHGL 144

Query: 85  NSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNP---MVADYD 141
            + L C L AGA V  + +F+      L    R++V   VP +   L ++      A   
Sbjct: 145 FNALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRLLEHYEFDDAAAAA 204

Query: 142 LSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSG 201
             ++R+ +SG+A L   + +    R    +L + YGMTE G  LS  L   ++P     G
Sbjct: 205 ARNLRLFVSGSAALPVPVLERWEERTGHTLL-ERYGMTETGMALSNPLDGERRP-----G 258

Query: 202 SCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           + G  +   E++++D + G  L   + GEI +RGP +  
Sbjct: 259 TVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFS 297

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score =  138 bits (349), Expect = 6e-38
 Identities = 78/240 (32%), Positives = 121/240 (50%), Gaps = 12/240 (5%)

Query: 2   CLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITS-VAQQVDGE 60
            L F   +EA     P+V +  DD   + ++SGT  LPKG +LTH++LI   V+  V G+
Sbjct: 149 WLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGD 208

Query: 61  NPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSV 120
                ++  D+ L  LPL+H   L+  L   L  GA  +++   +   +L  I+  R++ 
Sbjct: 209 -----MSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIEAERIT- 262

Query: 121 AAVVPPLV-LALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT 179
           +   PP V ++L ++P     DLSS+R    GA+ +  E+   LR R+P       YG T
Sbjct: 263 SFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQT 322

Query: 180 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
           E  P L+  LG  +     + GS G  V N E +V+D + G  +   + GEI  R PQ+M
Sbjct: 323 EIAP-LATVLGPEEH--LRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHRSPQLM 378

Length = 523

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  136 bits (346), Expect = 1e-37
 Identities = 72/224 (32%), Positives = 114/224 (50%), Gaps = 21/224 (9%)

Query: 22  EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 81
           +PDDP  + F+SG+ GLPKGVVL+H++L+ ++ Q     + N      DV+L  LPLFH 
Sbjct: 143 KPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLN----TEDVLLGALPLFHA 198

Query: 82  YSLNSVLLCSLRAGAGVL-----LMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPM 136
           + L   LL  L  G  V+     L  K     + ELI+ ++ ++    P  +   A+N  
Sbjct: 199 FGLTVTLLLPLLTGLRVVYYPNPLDAK----KIAELIRDYKATILCGTPTFLRGYARN-- 252

Query: 137 VADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPF 196
               D SS+R+V++GA  L +   +    +     + +GYG TE  PV+S        P 
Sbjct: 253 AHPEDFSSLRLVVAGAEKLPEATRELFEEKF-GIRILEGYGATECSPVIS-----VNTPM 306

Query: 197 PTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
             K G+ G  +   E++++ PET   LP  + G + +RGP +M 
Sbjct: 307 GNKPGTVGRPLPGIEVRIVSPETHEELPIGEGGLLLVRGPNVMS 350

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  133 bits (338), Expect = 1e-37
 Identities = 68/222 (30%), Positives = 105/222 (47%), Gaps = 17/222 (7%)

Query: 23  PDDPVALPFSSGTTGLPKGVVLTHKSLIT---SVAQQVDGENPNLYLTNGDVVLCVLPLF 79
            DD  A+ ++SG+TG PKGV+L+H++L     S+AQ        L LT  D +L VLP  
Sbjct: 1   DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQY-------LELTEDDRILAVLPFS 53

Query: 80  HIYSLNSVLLCSLRAGAGVLLMQKFEI-GALLELIQRHRVSVAAVVPPLVLALAKNPMVA 138
             Y L+  LL + R G  ++L  +F     +L+ + + R++  A VP     L +   +A
Sbjct: 54  FDYGLS-QLLTAFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLA 112

Query: 139 DYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPT 198
             D  S+R + +    L  +    LR   P A L   YG+TEA     +      +    
Sbjct: 113 REDFPSLRYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDR---- 168

Query: 199 KSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           +  S G  + N EL V+D + G      + GE+  RG  +MK
Sbjct: 169 RPDSIGKAIPNVELWVVDED-GNRCAPGEVGELVHRGANVMK 209

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score =  136 bits (344), Expect = 2e-36
 Identities = 75/230 (32%), Positives = 113/230 (49%), Gaps = 23/230 (10%)

Query: 23  PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQ--QVDGENPNLYLTNGDVVLCVLPLFH 80
           PDD   + FSSG+ G PKGV+L+H ++++++ Q   V        L N DV+L  LP FH
Sbjct: 781 PDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDV------FNLRNDDVILSSLPFFH 834

Query: 81  IYSLNSVLLCSLRAGAGVLL----MQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPM 136
            + L   L   L  G  V+          I     L+ +HR ++    P  +    +N  
Sbjct: 835 SFGLTVTLWLPLLEGIKVVYHPDPTDALGIAK---LVAKHRATILLGTPTFLRLYLRNKK 891

Query: 137 VADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLS------MCLG 190
           +     +S+R+V++GA  L  E+ DA   +    IL +GYG TE  PV S      +   
Sbjct: 892 LHPLMFASLRLVVAGAEKLKPEVADAFEEKFGIRIL-EGYGATETSPVASVNLPDVLAAD 950

Query: 191 FAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           F +Q   +K GS G  +    ++++DPET   LP  + G I I GPQ+MK
Sbjct: 951 FKRQTG-SKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMK 999

Length = 1146

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  130 bits (329), Expect = 3e-35
 Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 12/230 (5%)

Query: 13  EDQIPEVAIEP--DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGD 70
           ED+  +  +E        + ++SGTTG PKG VLT +++  +           + LT  D
Sbjct: 136 EDRKIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNT----FAIDLTMHD 191

Query: 71  VVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLA 130
             + +LPLFHI  +      +L AG  +++ +KFE    L +I++H+V+V   VP +  A
Sbjct: 192 RSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQA 251

Query: 131 LAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLG 190
           L         +L S+R   +G AP  +EL      R    + GQG+GMTE  P + M   
Sbjct: 252 LINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR--GFLFGQGFGMTETSPTVFM--- 306

Query: 191 FAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
            +++    K GS G  V   + ++ID      +   + GE+ IRGP +MK
Sbjct: 307 LSEEDARRKVGSIGKPVLFCDYELIDENKN-KVEVGEVGELLIRGPNVMK 355

Length = 496

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  128 bits (323), Expect = 8e-35
 Identities = 76/229 (33%), Positives = 114/229 (49%), Gaps = 23/229 (10%)

Query: 13  EDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVV 72
           + Q+ ++  + D P  + F+SG+TG PK VV T  + + S      G   NL LT  D  
Sbjct: 66  QQQLADLQPDLDRPATIIFTSGSTGKPKAVVHTWGNHLASAR----GSAENLGLTPDDNW 121

Query: 73  LCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALA 132
           L  LPLFH+  L ++++ SL AG  ++L  KF+  A+ E ++ H V+  ++VP  +  L 
Sbjct: 122 LLSLPLFHVSGL-AIVMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRLL 180

Query: 133 KNPMVADYDLSSIRVVLSGAAPLGKELEDALRSR-VPQAILGQGYGMTEAGPVLSMCLGF 191
           ++       LSS+R VL G AP+   L +  R R +P   L   YGMTE     S     
Sbjct: 181 ESL--GARWLSSLRAVLLGGAPIPPSLLEQARQRGIP---LYPTYGMTETA---SQVATL 232

Query: 192 AKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
               F  K GS G  +   EL++++P         Q GEI +RGP +  
Sbjct: 233 KPDDFLAKLGSVGKPLPGRELRIVNP---------QDGEILVRGPSLFL 272

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  128 bits (324), Expect = 2e-34
 Identities = 88/226 (38%), Positives = 121/226 (53%), Gaps = 13/226 (5%)

Query: 20  AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDV--VLCVLP 77
           A+ PDD   L ++ GTTGLPKG +LTH +L TS     D        T GDV  V+CVLP
Sbjct: 188 AVTPDDVALLQYTGGTTGLPKGAMLTHGNL-TSAVSIYDVWGKPSRATRGDVERVICVLP 246

Query: 78  LFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV 137
           LFHIY+L  +LL SLR G  + L Q+F++ A+   I+  R +V   VP + +ALA +P +
Sbjct: 247 LFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSL 306

Query: 138 ADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPF- 196
              DLSS+  + SG APL  E+ +    +     L  G+GMTE       C      P  
Sbjct: 307 EKRDLSSLATIGSGGAPLPVEVANFFERKTGLK-LKSGWGMTET------CSPGTGHPPE 359

Query: 197 -PTKSGSCGTVVRNAELKVID-PETGASLPHNQPGEICIRGPQIMK 240
            P K GS G ++   EL V+   +    LP  + GE+ IRGP + +
Sbjct: 360 GPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTR 405

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  126 bits (319), Expect = 5e-34
 Identities = 71/240 (29%), Positives = 106/240 (44%), Gaps = 54/240 (22%)

Query: 23  PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIY 82
           PDD   L ++SGTTG PKGV+LTH++L  + A  +    P   L+ GD VL  LPL H++
Sbjct: 87  PDDLATLIYTSGTTGNPKGVMLTHRNL-LAQAAALLEVIP---LSPGDRVLSFLPLAHVF 142

Query: 83  SLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVP----------------- 125
                    L +GA V   +      LLE ++  R +V   VP                 
Sbjct: 143 EQRLGEYLPLSSGARVNFAE--SPETLLEDLREVRPTVFFAVPRVWEKIYAGIEAKVAAA 200

Query: 126 -PLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILG----QGYGMTE 180
            PL   L +  +        +R  +SG APL  E+ +  R+      LG    +GYG+TE
Sbjct: 201 GPLKRKLFRWALG----GGRLRFAVSGGAPLPPEVLEFFRA------LGIPILEGYGLTE 250

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
              V ++      +P   + G+ G  +   E++ I  +          GEI +RGP +MK
Sbjct: 251 TSGVATV-----NRPGDIRIGTVGKPLPGVEVR-IAED----------GEILVRGPNVMK 294

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  127 bits (321), Expect = 6e-34
 Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 15/237 (6%)

Query: 3   LHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENP 62
           L +    E   ++     +  DDP+ L ++SGTTG PKG+V +H   +            
Sbjct: 150 LWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKF--- 206

Query: 63  NLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ---KFEIGALLELIQRHRVS 119
           +  L  GD          IY L   +   L +GA  +L      +    L E +++++V+
Sbjct: 207 HGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVT 266

Query: 120 VAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT 179
           +    P  +  L K  +   YDLSS+RV+ S   PL  E  +          +   YG T
Sbjct: 267 IFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFY-SALGVWILDIYGQT 325

Query: 180 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP 236
           E G      +GF     P K+GS G  +    ++ +D E G  +P    GE+ +R P
Sbjct: 326 ETG------MGFIAGRPPVKNGSSGLPLPGYAVRRVDDE-GNPVPPGV-GELVVRLP 374

Length = 528

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  125 bits (317), Expect = 2e-33
 Identities = 72/237 (30%), Positives = 118/237 (49%), Gaps = 20/237 (8%)

Query: 11  ADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQ---VDGENPNLYLT 67
            D   +      PDD   + ++SGTTG PKG  LTH++L  + AQ    V G      L 
Sbjct: 206 GDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPG------LG 259

Query: 68  NGD-VVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPP 126
           +G   VL  LP+FH Y L   L  ++  G  ++L+   +I  +L+ +++H  +    VPP
Sbjct: 260 DGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPP 319

Query: 127 LVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLS 186
           L   +A+       DLS +R   SGA  L       L  ++   +L +GYG+TE  P++ 
Sbjct: 320 LYEKIAEAAEERGVDLSGVRNAFSGAMALPVSTV-ELWEKLTGGLLVEGYGLTETSPII- 377

Query: 187 MC--LGFAKQPFPTKSGSCGTVVRNAELKVIDPET-GASLPHNQPGEICIRGPQIMK 240
           +   +   ++P     G  G    + E++++DPE    ++P  + GE+ +RGPQ+ K
Sbjct: 378 VGNPMSDDRRP-----GYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFK 429

Length = 573

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  123 bits (311), Expect = 1e-32
 Identities = 77/245 (31%), Positives = 120/245 (48%), Gaps = 33/245 (13%)

Query: 9   SEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLI--TSVAQQVDGENPNLYL 66
            E+ E + PE+  + +    L ++SGTTG PKGVV +H+SL+  T  +   D     L L
Sbjct: 149 EESPEYEWPEL--DENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPDS----LGL 202

Query: 67  TNGDVVLCVLPLFHI------YSLNSVLLCSLRAGAGVLLMQKFEIGA-LLELIQRHRVS 119
           +  D VL V+P+FH+      Y+       +   GA ++L  ++   A LL+LI+  +V+
Sbjct: 203 SESDTVLPVVPMFHVNAWGLPYA-------ATMVGAKLVLPGRYLDPASLLDLIEEEKVT 255

Query: 120 VAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT 179
           V+A VP + L L         DLSS+R V+ G + L + L + L  R  + I    +GMT
Sbjct: 256 VSAGVPTIWLGLLNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEERGVEVI--HAWGMT 313

Query: 180 EAGPVLSMCL---GFAKQPFPTK---SGSCGTVVRNAELKVIDPETGASLPHN--QPGEI 231
           E  P+ ++          P   K       G  V   EL+++D E    LP +    GE+
Sbjct: 314 ETSPLGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIVDDEGN-ELPWDGKTVGEL 372

Query: 232 CIRGP 236
            +RGP
Sbjct: 373 VVRGP 377

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score =  121 bits (305), Expect = 1e-31
 Identities = 70/238 (29%), Positives = 105/238 (44%), Gaps = 23/238 (9%)

Query: 15  QIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLI------TSVAQQVDGENPNLYLTN 68
            +P      D   AL ++ GTTG+PKG   T + ++       +VA              
Sbjct: 200 PVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGG---------E 250

Query: 69  GDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLV 128
             V L  LP F I   N  LL  L +GA ++L+ +++  A +  ++R+RV+   ++    
Sbjct: 251 DSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNA 310

Query: 129 LALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQA---ILGQG-YGMTEAGPV 184
           + L  +P  A+YDLSS+R V        K+L    R R       +L +  +GMTE    
Sbjct: 311 VELMDHPRFAEYDLSSLRQV--RVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTC 368

Query: 185 LSMCLGFAKQPFPTKSGS--CGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
            +   GF    F   S     G  V   E K+ D ETG  LP    GEI +R P ++K
Sbjct: 369 DTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLK 426

Length = 567

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  119 bits (300), Expect = 2e-31
 Identities = 65/213 (30%), Positives = 100/213 (46%), Gaps = 18/213 (8%)

Query: 25  DPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSL 84
           D  A+ ++SGTTG PKGV+LTH  L+ +           L L   DV+L  LPLFHI + 
Sbjct: 82  DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARL----LGLRPDDVLLTPLPLFHINAQ 137

Query: 85  NSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSS 144
              +  +L  GA ++L+ +F      + +++H  +V  ++  +   L K P   D     
Sbjct: 138 AYSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRDHP 197

Query: 145 IRVVLSGAAPLGKELEDALRSR--VPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGS 202
           +R V    APL   +  A   R  V    L +GYGMTE G      +       P   GS
Sbjct: 198 LRFVFG--APLPAAIWPAFEERFGVK---LVEGYGMTETG------VPIIAPGDPAPPGS 246

Query: 203 CGTVVRNAELKVIDPETGASLPHNQPGEICIRG 235
           CG      E++++D + G  +P  + GE+ +R 
Sbjct: 247 CGRPRPGVEVRIVDED-GREVPPGEVGELVVRP 278

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  114 bits (288), Expect = 3e-30
 Identities = 68/228 (29%), Positives = 111/228 (48%), Gaps = 24/228 (10%)

Query: 23  PDDPVALPFSSGTTGLPKGVVLTHKSLITS--VAQQVDGENPNLYLTNGDVVLCVLPLFH 80
           PDD  A   + GTTG PK    +H++ + +  +A  + G  P      GDV+L  LPLFH
Sbjct: 1   PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGP------GDVLLNGLPLFH 54

Query: 81  IYSLNSVLLCSLRAGAGVLLM------QKFEIGALLELIQRHRVSVAAVVPPLVLALAKN 134
           +       L  L  GA V+L           +    ++++R+RV++ + VP ++ AL + 
Sbjct: 55  VGGAIVTGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQV 114

Query: 135 PMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQ 194
           P+  D D+SS+R  L+GAAPL  E+     +     ++ +GYGMTE   V ++       
Sbjct: 115 PLG-DADISSLRYALTGAAPLPVEVARRFEAVTGVPVV-EGYGMTEGTGVSAINPRGG-- 170

Query: 195 PFPTKSGSCGTVVRNAELKVIDPETGASLPH----NQPGEICIRGPQI 238
             P + GS G  +    ++V   + G +L       + G + IRGP +
Sbjct: 171 --PRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNV 216

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score =  114 bits (287), Expect = 3e-29
 Identities = 68/222 (30%), Positives = 101/222 (45%), Gaps = 19/222 (8%)

Query: 23  PDDPVALPFSSGTTGLPKGVVLTHKSLITSV---AQQVDGENPNLYLTNGDVVLCVLPLF 79
            DD     +SSG+TG PKGVV  H  ++ +    A+ V      L +T  DVV     LF
Sbjct: 160 ADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKNV------LGITEDDVVFSAAKLF 213

Query: 80  HIYSLNSVLLCSLRAGAGVLLMQKF-EIGALLELIQRHRVSVAAVVPPLVLALAKNPMVA 138
             Y L + L   L  GA  +LM +     A+   I+R++ +V   VP L  A+   P   
Sbjct: 214 FAYGLGNGLYFPLSVGATTVLMPERPTPDAVFATIERYKPTVFFGVPTLYAAMLAAPEKP 273

Query: 139 DYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPV-LSMCLGFAKQPFP 197
           + DLSS+R+ +S    L  E+    +      IL  G G TE   + LS       +P  
Sbjct: 274 ERDLSSLRLCVSAGEALPAEIGYRWKELFGLEIL-DGIGSTEMLHIFLS------NRPGA 326

Query: 198 TKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
            K G+ G  V   E+K++D + G  +   + GE+ +RG    
Sbjct: 327 VKYGTSGKPVPGYEVKLVDED-GEEVADGEIGELWVRGDSSA 367

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score =  113 bits (285), Expect = 5e-29
 Identities = 71/240 (29%), Positives = 109/240 (45%), Gaps = 15/240 (6%)

Query: 5   FTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLIT-SVAQQVDGENPN 63
               +          A  P D   L ++ GTTG PKGV+ TH+S+ T +  Q  + E P 
Sbjct: 149 LLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPA 208

Query: 64  LYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAV 123
                    L   PL H        L +L  G  V+++ KF+   +L  I+  R++   +
Sbjct: 209 -----DPRFLMCTPLSHAGGA--FFLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFL 261

Query: 124 VPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGK-ELEDALRSRVPQAILGQGYGMTEAG 182
           VP ++ AL  +P +   DLSS+  V  GA+P+    L +A+    P  I  Q YG TEA 
Sbjct: 262 VPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERFGP--IFAQYYGQTEAP 319

Query: 183 PVLSMCLGFAKQPF--PTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
            V++  L         P +  SCG       + ++D + G  +   + GEIC+RGP +M 
Sbjct: 320 MVITY-LRKRDHDPDDPKRLTSCGRPTPGLRVALLDED-GREVAQGEVGEICVRGPLVMD 377

Length = 524

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  112 bits (284), Expect = 8e-29
 Identities = 72/246 (29%), Positives = 123/246 (50%), Gaps = 31/246 (12%)

Query: 9   SEADEDQIPEVAIE--PDDPVALPFSSGTTGLPKGVVLTHKSLIT---SVAQQVDGENPN 63
              D+ ++        PDDP+ + ++SGTTG PKG  LTH++++     + +        
Sbjct: 182 RAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGE-------A 234

Query: 64  LYLTNGD-VVLCVLPLFHIYSLNSVL--LCSLRAGAGVLLM-QKFEIGALLELIQRHRVS 119
           + LT  D + + V PL+H + +  VL  L  +  GA ++   + F+  A L  ++  R +
Sbjct: 235 MKLTEEDRLCIPV-PLYHCFGM--VLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCT 291

Query: 120 VAAVVPPLVLALAKNPMVADYDLSSIRV-VLSGA---APLGKELEDALR-SRVPQAILGQ 174
               VP + +A   +P  A +DLSS+R  +++G+     + K + D +  S V   I   
Sbjct: 292 ALYGVPTMFIAELDHPDFARFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEV--TI--- 346

Query: 175 GYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR 234
            YGMTE  PV          P   +  + G  + + E+K++DPETG ++P  + GE+C R
Sbjct: 347 AYGMTETSPV--STQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTR 404

Query: 235 GPQIMK 240
           G  +MK
Sbjct: 405 GYSVMK 410

Length = 559

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  110 bits (277), Expect = 5e-28
 Identities = 77/243 (31%), Positives = 118/243 (48%), Gaps = 26/243 (10%)

Query: 5   FTVLSEADEDQIPEVAIEPDDPVA-LPFSSGTTGLPKGVVLTHK----SLITSVAQQVDG 59
           F  L    +++         D VA + ++SGTTG PKGV+ T+     S + S       
Sbjct: 121 FAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSAL----- 175

Query: 60  ENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVS 119
              NL LT  D  L  +P+FHI  L S+L+ S+  G  V+L++KF+   + +L+Q   V+
Sbjct: 176 ---NLGLTEDDCWLAAVPIFHISGL-SILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVT 231

Query: 120 VAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKE-LEDALRSRVPQAILGQGYGM 178
           + +VV  ++  L +      Y  SS R +L G  P  K  LE      +P   + Q YGM
Sbjct: 232 IISVVSTMLQRLLERLGEGTYP-SSFRCMLLGGGPAPKPLLEQCKEKGIP---VYQSYGM 287

Query: 179 TE-AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQ 237
           TE A  ++++    A     TK GS G  +   ELK+     G  +P  + GEI ++GP 
Sbjct: 288 TETASQIVTLSPEDAL----TKLGSAGKPLFPCELKIEK--DGVVVPPFEEGEIVVKGPN 341

Query: 238 IMK 240
           + K
Sbjct: 342 VTK 344

Length = 483

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  111 bits (279), Expect = 5e-28
 Identities = 78/273 (28%), Positives = 107/273 (39%), Gaps = 83/273 (30%)

Query: 22  EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQ--QVDGENPNLYLTNGDVVLCVLPLF 79
           +PDD   + ++SGTTG PKGV+LTH++L+  VA   +V        +  GD VL  LPL 
Sbjct: 189 KPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPP-----IGPGDRVLSFLPLA 243

Query: 80  HIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVP-------------- 125
           HI+        +L    GV ++ K +   LLE ++  R +V   VP              
Sbjct: 244 HIFERAFEGGLAL--YGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKV 301

Query: 126 -------------PLVLALAKN-----PMVADYDLS----------------SIRVVLSG 151
                         L +A  K             L                  IR  LSG
Sbjct: 302 AKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSG 361

Query: 152 AAPLGKELEDALRSRVPQAILG----QGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVV 207
            APL  EL    RS      LG    +GYG+TE   V+S+       P     G+ G  +
Sbjct: 362 GAPLSPELLHFFRS------LGIPILEGYGLTETSAVVSVN-----PPDRFVLGTVGKPL 410

Query: 208 RNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
              E+K+ D            GEI +RGP +MK
Sbjct: 411 PGIEVKIAD-----------DGEILVRGPNVMK 432

Length = 613

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  109 bits (274), Expect = 2e-27
 Identities = 65/225 (28%), Positives = 121/225 (53%), Gaps = 16/225 (7%)

Query: 21  IEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNG-DVVLCVLPLF 79
           + P+D   L ++ GTTG+ KG +LTH++++ ++ Q      P   L  G ++V+  LPL+
Sbjct: 203 LVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGP--LLHPGKELVVTALPLY 260

Query: 80  HIYSL--NSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV 137
           HI++L  N +L   L  G  +L+    +I   ++ ++++  +    V  L  AL  N   
Sbjct: 261 HIFALTVNCLLFIEL-GGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEF 319

Query: 138 ADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFP 197
            + D SS+++ + G   + + + +       Q +L +GYG+TE  P++S+       P+ 
Sbjct: 320 QELDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLL-EGYGLTECSPLVSVN------PYD 372

Query: 198 TK--SGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
               SGS G  V + E+K++D + G  +P  +PGE+ ++GPQ+M 
Sbjct: 373 LDYYSGSIGLPVPSTEIKLVDDD-GNEVPPGEPGELWVKGPQVML 416

Length = 560

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  108 bits (273), Expect = 3e-27
 Identities = 78/294 (26%), Positives = 124/294 (42%), Gaps = 69/294 (23%)

Query: 2   CLHFTVLSEAD------EDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQ 55
           C    V S  +      ++++P    +P+D   + ++SGTTG PKGV+LTH +++  VA 
Sbjct: 83  CDAVKVYSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142

Query: 56  QVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQR 115
               +    ++   DV +  LPL HI+    V    L  G  +      +   L   I+ 
Sbjct: 143 IN--KIVPEFIGPTDVYISYLPLAHIFERV-VENVCLYIGGRIGYYSG-DTRGLKGDIKE 198

Query: 116 HRVSVAAVVPPL-------VLA-LAKNPMVA--------DYDLSSI-------------- 145
            + +V   VP +       +LA +     +         +Y L+++              
Sbjct: 199 LKPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGHGYASPLWDKL 258

Query: 146 -------------RVVLSGAAPLGKELEDALRSR--VPQAILGQGYGMTE--AGPVLSMC 188
                        R++LSG APL  + ++ LR     P   + QGYG+TE  AG  LS  
Sbjct: 259 VFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCP---VLQGYGLTETCAGGTLSD- 314

Query: 189 LGFAKQPFPTKSGSCGTVVRNAELKVID-PETG-ASLPHNQPGEICIRGPQIMK 240
                 P  T +G  G  +   E+K++D PE G  +      GEICIRGP + K
Sbjct: 315 ------PGDTTTGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFK 362

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score =  108 bits (272), Expect = 3e-27
 Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 11/244 (4%)

Query: 1   NCLHF-TVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDG 59
             + F   L+E        V + PDD   L ++ GTTG+ KG  L H++++ +V Q    
Sbjct: 180 GHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAW 239

Query: 60  ENPNLYLTNGD---VVLCVLPLFHIYSLNSVLLCSLRAGA-GVLLMQKFEIGALLELIQR 115
             P             +C LPL+HI++L    L  +R G   +L+    +I   ++ +++
Sbjct: 240 LQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKK 299

Query: 116 HRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG 175
           ++V +   V  L  AL  NP     D S + V   G   + + + +         I  +G
Sbjct: 300 YQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGMAVQRPVAERWLEMTGCPIT-EG 358

Query: 176 YGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRG 235
           YG++E  PV + C       F   SG+ G  + + E+ + D + G  LP  +PGEICIRG
Sbjct: 359 YGLSETSPVAT-CNPVDATEF---SGTIGLPLPSTEVSIRD-DDGNDLPLGEPGEICIRG 413

Query: 236 PQIM 239
           PQ+M
Sbjct: 414 PQVM 417

Length = 557

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  108 bits (272), Expect = 3e-27
 Identities = 73/243 (30%), Positives = 120/243 (49%), Gaps = 17/243 (6%)

Query: 7   VLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQ------QVDGE 60
            L +     +  V +  DD   L ++ GTTGL KG +LTH +L+ ++ Q      Q+  +
Sbjct: 190 ALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPD 249

Query: 61  NPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGA-GVLLMQKFEIGALLELIQRHRVS 119
              L     +V++  LPL+HIY+  +  +C + +G   VL+    +I   ++ + + R S
Sbjct: 250 GQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFS 309

Query: 120 VAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT 179
               +  L +AL  +P   D D S++++  SG   L K   +     +    + +GYG+T
Sbjct: 310 ALLGLNTLFVALMDHPGFKDLDFSALKLTNSGGTALVKATAERWEQ-LTGCTIVEGYGLT 368

Query: 180 EAGPVLSMCLGFAKQPFPTKS--GSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQ 237
           E  PV S        P+   +  G+ G  V    LKVID + G  LP  + GE+CI+GPQ
Sbjct: 369 ETSPVAS------TNPYGELARLGTVGIPVPGTALKVIDDD-GNELPLGERGELCIKGPQ 421

Query: 238 IMK 240
           +MK
Sbjct: 422 VMK 424

Length = 562

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  108 bits (271), Expect = 5e-27
 Identities = 69/228 (30%), Positives = 116/228 (50%), Gaps = 16/228 (7%)

Query: 18  EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITS---VAQQVDGENPNLYLTNGDVVLC 74
           + +++ DDP+ + ++SGTTG PKG  L+H +++ +   VA+        L LT  D  LC
Sbjct: 195 QASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAES-------LGLTEHD-RLC 246

Query: 75  V-LPLFHIYSL-NSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALA 132
           V +PL+H + +  + L C       V   + F+  A L+ ++  R +    VP + +A  
Sbjct: 247 VPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAEL 306

Query: 133 KNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFA 192
            +P   ++DLSS+R  +   AP   E+   +   +  A +   YGMTE  PV       A
Sbjct: 307 DHPQRGNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSL--QTTA 364

Query: 193 KQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
                 +  + G    + E+KV+DP+ GA++P  + GE+C RG  +MK
Sbjct: 365 ADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGEIGELCTRGYSVMK 411

Length = 558

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  108 bits (271), Expect = 5e-27
 Identities = 73/240 (30%), Positives = 124/240 (51%), Gaps = 17/240 (7%)

Query: 6   TVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQ--QVDGENPN 63
             L++     + E   + DD   L ++ GTTG+ KG +LTH++L+ ++ Q   + G N  
Sbjct: 189 DALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSN-- 246

Query: 64  LYLTNG-DVVLCVLPLFHIYSLNSVLLCSLRAGA-GVLLMQKFEIGALLELIQRHRVSVA 121
             L  G ++++  LPL+HIY+     +  +  G   +L+    ++ A+++ + + + S  
Sbjct: 247 --LNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGF 304

Query: 122 AVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALR-SRVPQAILGQGYGMTE 180
             +  L +AL  N      D S++++ LSG   L  +L  A R   V    + +GYGMTE
Sbjct: 305 VGLNTLFVALCNNEAFRKLDFSALKLTLSGGMAL--QLATAERWKEVTGCAICEGYGMTE 362

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
             PV+S+    A Q      G+ G  V +   KVID + G  LP  + GE+C++GPQ+MK
Sbjct: 363 TSPVVSVNPSQAIQV-----GTIGIPVPSTLCKVIDDD-GNELPLGEVGELCVKGPQVMK 416

Length = 562

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score =  108 bits (271), Expect = 6e-27
 Identities = 71/240 (29%), Positives = 111/240 (46%), Gaps = 24/240 (10%)

Query: 9   SEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITS--VAQQVDGENPNLYL 66
            +  +       I PDD  A   + GTTG+PK    TH + + +  +   + G  P    
Sbjct: 198 RQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGP---- 253

Query: 67  TNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM--QKFE----IGALLELIQRHRVSV 120
             GD V C LPLFH+ +L    L  L  GA V+L   Q +     I    ++++R+R++ 
Sbjct: 254 --GDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINF 311

Query: 121 AAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE 180
            + VP +  AL + P V  +D+SS+R  L GAAPL  E+     +     I+ +GYG+TE
Sbjct: 312 LSGVPTVYAALLQVP-VDGHDISSLRYALCGAAPLPVEVFRRFEAATGVRIV-EGYGLTE 369

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVI--DPETGAS--LPHNQPGEICIRGP 236
           A  V S+           + GS G  +    ++V+  D           ++ G +CI GP
Sbjct: 370 ATCVSSV--NPPDG--ERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGP 425

Length = 632

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  106 bits (266), Expect = 2e-26
 Identities = 78/236 (33%), Positives = 115/236 (48%), Gaps = 12/236 (5%)

Query: 6   TVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLY 65
            +L+EA     P V I  D P  + ++SGTTG PKG VLTH +L     Q +     N  
Sbjct: 157 DLLAEAGPAHAP-VDIPNDSPALIMYTSGTTGRPKGAVLTHANL---TGQAMTCLRTNGA 212

Query: 66  LTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLL--MQKFEIGALLELIQRHRVSVAAV 123
             N DV    +PLFHI  + S+ L  L  GA  ++  +  F+ G LL++++  +V+   +
Sbjct: 213 DINSDVGFVGVPLFHIAGIGSM-LPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFL 271

Query: 124 VPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGP 183
           VP    A+         DL ++RV+  GAAP    L   + +  P+A +   +G TE  P
Sbjct: 272 VPAQWQAVCAEQQARPRDL-ALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSP 330

Query: 184 VLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
           V  M LG   +    K GS G V+     +V+D E    +P  + GEI  R P +M
Sbjct: 331 VTCMLLG---EDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLM 382

Length = 542

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score =  105 bits (265), Expect = 3e-26
 Identities = 76/238 (31%), Positives = 116/238 (48%), Gaps = 16/238 (6%)

Query: 5   FTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNL 64
               + A  D    V    DD  A+ ++SGTTG  KG +L+H +L+++    VD      
Sbjct: 137 LLEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVD------ 190

Query: 65  Y--LTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAA 122
           Y   T  DV++  LP+FH + L      +L AGA ++ + KF+  A+L L+   R +V  
Sbjct: 191 YWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALMP--RATVMM 248

Query: 123 VVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAG 182
            VP     L + P +     + +R+ +SG+APL  E     + R   AIL + YGMTE  
Sbjct: 249 GVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTGHAIL-ERYGMTETN 307

Query: 183 PVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
              S      ++      G+ G  +    L+V DPETGA LP  + G I ++GP + K
Sbjct: 308 MNTSNPYDGERRA-----GTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFK 360

Length = 504

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score =  104 bits (261), Expect = 5e-26
 Identities = 67/230 (29%), Positives = 105/230 (45%), Gaps = 17/230 (7%)

Query: 11  ADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGD 70
            D+     +  E DD     ++SGTTG PKGV+  H+  +T  A+    E   L L  GD
Sbjct: 78  LDDSGAALLVTEADDIAYWLYTSGTTGKPKGVMHRHRDPLTF-AEAFARE--LLGLQPGD 134

Query: 71  VVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM-QKFEIGALLELIQRHRVSVAAVVPPLVL 129
            +     LF  Y L + LL  L +GA  +L+       A+L+L+ RHR +V   VP L  
Sbjct: 135 RIFSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYR 194

Query: 130 ALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ---GYGMTEAGPVLS 186
           AL ++   +     S+R+ +S     G+ L   L  R  +A   +   G G TE   +  
Sbjct: 195 ALLESGAGSAPLFRSVRLCVSA----GEALPAGLAERWAEATGIEILDGIGSTEVLHIF- 249

Query: 187 MCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP 236
                + +P   + G+ G  V   E +++D   G  +P    G++ +RGP
Sbjct: 250 ----ISNRPGAARPGTTGRPVPGYEARLVDES-GREVPAGTVGDLWVRGP 294

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score =  103 bits (258), Expect = 2e-25
 Identities = 67/235 (28%), Positives = 104/235 (44%), Gaps = 27/235 (11%)

Query: 14  DQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLIT---SVAQQVDGENPNLYLTNGD 70
           D  P   +   D  A+ ++SG+TG PKGVVL+H++L+    SVA  ++           D
Sbjct: 153 DADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLE-------NRPDD 205

Query: 71  VVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLA 130
            +L VLPL   Y  N  L  +   GA V+L        +L+ +++H ++  A VPPL   
Sbjct: 206 RLLAVLPLSFDYGFNQ-LTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQ 264

Query: 131 LAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLG 190
           LA      +    S+R + +    + +     LRS +P A L   YG+TEA         
Sbjct: 265 LA-QLDWPESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEA--------- 314

Query: 191 FAKQPFP-----TKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           F     P      +  S G  + NAE+ V+  +     P  + GE+  RG  +  
Sbjct: 315 FRSTYLPPEEVDRRPDSIGKAIPNAEVLVLREDGSECAP-GEEGELVHRGALVAM 368

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score =  103 bits (258), Expect = 3e-25
 Identities = 81/281 (28%), Positives = 114/281 (40%), Gaps = 68/281 (24%)

Query: 8   LSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLT 67
           L+            +PDD   L ++SG+TG PKGV++TH +L+ ++            L 
Sbjct: 132 LAALAAADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIARA----FGLD 187

Query: 68  NGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM--QKFEIGAL------LELIQRHRVS 119
             DV +  LPL+H   L   LL  L AG  V+LM    F    L      LE I R+R +
Sbjct: 188 PDDVGVSWLPLYHDMGLIGGLLQPLYAGFPVVLMSPLAF----LRRPLRWLEAISRYRAT 243

Query: 120 VAAVVPP----LVLALAKNPMVADYDLSSIRVVLSGA---------------APLGKELE 160
           V+   P     L +   ++  +A  DLSS RV  +GA               AP G    
Sbjct: 244 VSG-APNFAYDLCVRRVRDEQLAGLDLSSWRVAFNGAEPVRADTLERFAERFAPAG---- 298

Query: 161 DALRSRVPQAILGQGYGMTEAGPVLSMC---------------LGFAKQPFPTKSG---- 201
              R   P+A L   YG+ EA   +S                 L           G    
Sbjct: 299 --FR---PEAFLP-CYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAVAAADGAAAR 352

Query: 202 ---SCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
              SCG  +   E++++DPET   LP  + GEI +RGP + 
Sbjct: 353 ELVSCGRPLPGHEVRIVDPETRRPLPDGEVGEIWVRGPSVA 393

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score =  102 bits (256), Expect = 4e-25
 Identities = 76/239 (31%), Positives = 115/239 (48%), Gaps = 17/239 (7%)

Query: 6   TVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLY 65
            +++     ++   A++ DDP    F+SGTTG PK  VLTH  +   +   +    P   
Sbjct: 145 ALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGT- 203

Query: 66  LTNGDVVLCVLPLFH---IYSLNSVLLCSLRAGAGVLLM-QKFEIGALLELIQRHRVSVA 121
            T  D  L V PL H   I+ L  V     R  A VLL  ++F+   +  L++RHRV+  
Sbjct: 204 -TEQDASLVVAPLSHGAGIHQLCQVA----RGAATVLLPSERFDPAEVWALVERHRVTNL 258

Query: 122 AVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRS-RVPQAILGQGYGMTE 180
             VP ++  L ++P V  YD SS+R V+   AP+ +   D  R+      +L Q +G+ E
Sbjct: 259 FTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYR--ADQKRALAKLGKVLVQYFGLGE 316

Query: 181 AG---PVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP 236
                 VL   L  A+     + G+CG      E+++ D E G  LP  + GEIC+ GP
Sbjct: 317 VTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDE-GRELPPGETGEICVIGP 374

Length = 528

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score =  101 bits (253), Expect = 8e-25
 Identities = 73/241 (30%), Positives = 107/241 (44%), Gaps = 36/241 (14%)

Query: 17  PEVAI-EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLY-LTNGDVVLC 74
           P   + +PDD   + F+SG+TG PKGV ++H +L + +   V       + LT GDV   
Sbjct: 89  PAALVADPDDLAYILFTSGSTGKPKGVQISHANLASFLDWMV-----EDFDLTEGDVFSN 143

Query: 75  VLPLFHIYSLNSV--LLCSLRAGAGVLLMQKFEIG---ALLELIQRHRVSVAAVVPPLVL 129
             P F  + L SV  L  +L +GA + ++ K +I    AL E ++ H ++V   VP    
Sbjct: 144 QAP-FS-FDL-SVFDLFPALASGATLYVIPKEQIADPLALFEFLKEHGLTVWVSVPSFAS 200

Query: 130 ALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAG------- 182
            L  +  +    L S+R  L     L K+L  ALR R P A +   YG TEA        
Sbjct: 201 LLLLSRELNPESLPSLRTFLFCGEVLPKKLAKALRRRFPNARIINLYGPTEATVAVTAYE 260

Query: 183 ---PVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
                LS       +P P      G         ++D E G  +P  + GE+ I GPQ+ 
Sbjct: 261 VTPEPLS-----RNEPLPI-----GYPKPGLRALILD-EDGRPVPPGEEGELVIAGPQVS 309

Query: 240 K 240
            
Sbjct: 310 P 310

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 99.2 bits (247), Expect = 6e-24
 Identities = 68/237 (28%), Positives = 115/237 (48%), Gaps = 12/237 (5%)

Query: 6   TVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLY 65
             L++   +  P+ A+ P D V L ++SGTT  PKGV+ ++ +L       V      L 
Sbjct: 131 RRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIA----LG 186

Query: 66  LTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVP 125
           LT  + +L V PL+H+ + +   +  L  G  + + ++F+  A+L  I+RHR++ A + P
Sbjct: 187 LTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAP 246

Query: 126 PLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE--AGP 183
            ++  +   P    +DL S+   + G     +           +A     YG+TE  +G 
Sbjct: 247 VMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGD 306

Query: 184 VLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
            L M  G   +    K GS G  + + E+++ D   G  LP N  GEIC+RGP++ K
Sbjct: 307 TL-MEAGREIE----KIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGPKVTK 357

Length = 497

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 98.1 bits (245), Expect = 1e-23
 Identities = 68/265 (25%), Positives = 114/265 (43%), Gaps = 62/265 (23%)

Query: 8   LSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHK-----SLITSVAQQVDGENP 62
           L+  D D +P    +  DP++L ++SGTTG PKGVV TH+     +L   +   +     
Sbjct: 151 LAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNVIEWGMPDR-- 208

Query: 63  NLYLTNGDVVLCVLPLFH------IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRH 116
                   V L  LP+FH       +++ +V       G   + ++K +  A+ +LI++H
Sbjct: 209 -------PVYLWTLPMFHCNGWCFPWAITAV-------GGTHVCLRKVDAPAIYDLIEKH 254

Query: 117 RVSVAAVVPPLVLALAKNPMVADYDLSS-IRVVLSGAAP---LGKELEDALRSRVPQAIL 172
           +V+     P ++  LA  P      L   +RV+ +GA P   + K++E+           
Sbjct: 255 KVTHLCGAPTVLNMLANAPEADKLPLPRPVRVMTAGAPPPPAVIKKMEELGFEVT----- 309

Query: 173 GQGYGMTEAGPVLSMCLGF---------------AKQPFPTKSGSCGTVVRNAELKVIDP 217
              YG+TE    +++C                  A+Q            V   E+ V+DP
Sbjct: 310 -HVYGLTETYGPITVCEWKPEWDALPAEERARLKARQGVRY--------VGLEEVDVVDP 360

Query: 218 ETGASLPHN--QPGEICIRGPQIMK 240
           ET   +P +    GEI +RG  +MK
Sbjct: 361 ETMKDVPRDGKTIGEIVMRGNTVMK 385

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 96.9 bits (241), Expect = 4e-23
 Identities = 65/235 (27%), Positives = 118/235 (50%), Gaps = 8/235 (3%)

Query: 8   LSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLT 67
           L+   +  +P + IEPDD   L ++ GTTG+ KG +LTH++L+ ++ Q          L 
Sbjct: 192 LALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLE 251

Query: 68  NG-DVVLCVLPLFHIYSLNSVLLCSLR-AGAGVLLMQKFEIGALLELIQRHRVSVAAVVP 125
            G +VV+  LPL+HI++L +  L  ++  G   L+    ++   ++ +++ R +    V 
Sbjct: 252 EGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVN 311

Query: 126 PLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVL 185
            L   L   P     D SS+++ L G   + + + +  + +V    L + YG+TE  P  
Sbjct: 312 TLFNGLLNTPGFDQIDFSSLKMTLGGGMAVQRSVAERWK-QVTGLTLVEAYGLTETSP-- 368

Query: 186 SMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           + C+          +GS G  + + +  + D + G  L   + GE+CI+GPQ+MK
Sbjct: 369 AACIN--PLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGELCIKGPQVMK 420

Length = 560

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 95.4 bits (238), Expect = 6e-23
 Identities = 67/228 (29%), Positives = 101/228 (44%), Gaps = 13/228 (5%)

Query: 17  PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVL 76
           P+    PDD   + ++SG+TG PKGVV+TH+SL+  +A           L   D VL   
Sbjct: 113 PDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLA----WLARRYGLDPDDRVLQFA 168

Query: 77  PLFHIYSLNSVLLCSLRAGAGVLL----MQKFEIGALLELIQRHRVSVAAVVPPLVLALA 132
            L    S+  +   +L AGA +++     ++ +   L  LI  H V+V  + P L+  LA
Sbjct: 169 SLSFDASVEEIFG-ALLAGATLVVPPEDEERDDAALLAALIAEHPVTVLNLTPSLLALLA 227

Query: 133 KNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFA 192
                    L+S+R+V+ G   L   L D  R+R P A L   YG TE     +  L   
Sbjct: 228 ---AALPPALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDP 284

Query: 193 KQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
                      G  + N  L V+D +    +P    GE+ I GP + +
Sbjct: 285 DDAPRESPVPIGRPLANTRLYVLDDD-LRPVPVGVVGELYIGGPGVAR 331

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 95.1 bits (237), Expect = 1e-22
 Identities = 66/218 (30%), Positives = 95/218 (43%), Gaps = 14/218 (6%)

Query: 19  VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPL 78
           +    DDP  L F+SGTTGLPK V+ TH   +      V G    L L   D+   +   
Sbjct: 76  IVTSADDPALLYFTSGTTGLPKMVLHTHSYPL---GHLVTGAYW-LDLRPDDLHWTIADP 131

Query: 79  FHIYSLNSVLLCSLRAGAGVLL--MQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPM 136
                  S L      GA V +   ++F+    LEL++R+ V+     PP    +     
Sbjct: 132 GWAKGAWSSLFAPWLLGAAVFVYHGRRFDAERTLELLERYGVTTFC-APPTAYRMLLQQD 190

Query: 137 VADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPF 196
           ++ YD S +R V+S   PL  E+ D  R+     I   GYG TE G +++   G      
Sbjct: 191 LSSYDFSHLRHVVSAGEPLNPEVIDWWRAATGLPIR-DGYGQTETGLLVANFPG-----M 244

Query: 197 PTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR 234
             K GS G       + +ID E G  LP  + G+I +R
Sbjct: 245 EVKPGSMGRPAPGYRVAIIDDE-GNELPPGEEGDIAVR 281

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 94.8 bits (237), Expect = 2e-22
 Identities = 66/219 (30%), Positives = 98/219 (44%), Gaps = 12/219 (5%)

Query: 22  EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 81
           +PDD   + ++SG+TG PKGV++ H+ L+  +A   +       LT GD VL        
Sbjct: 91  DPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQE----RYGLTAGDRVLQFASFSFD 146

Query: 82  YSLNSVLLCSLRAGAGVLLM---QKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVA 138
            S+  +    L +GA ++L       +  AL EL++ HR++V  +VP L+ AL     + 
Sbjct: 147 ASVWEIFP-PLLSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALL--DALE 203

Query: 139 DYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPT 198
              L S+R+V+ G   L  EL    R   P A L   YG TE   V              
Sbjct: 204 PAALPSLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTET-TVDVTYHEVDPDDLDG 262

Query: 199 KSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQ 237
            S   G  + N  + V+D E    +P   PGE+ I G  
Sbjct: 263 GSVPIGRPIANTRVYVLD-EDLRPVPVGVPGELYIGGAG 300

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 94.4 bits (235), Expect = 3e-22
 Identities = 66/235 (28%), Positives = 99/235 (42%), Gaps = 15/235 (6%)

Query: 8   LSEADEDQIP---EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNL 64
           LS+   D  P    +    D+  A+ F+SGT GLPKGV+LTH +++ S           L
Sbjct: 168 LSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCAR----L 223

Query: 65  YLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVV 124
            LT  DV +   PL H       +      GA  +L+  F   A L L+++ R +     
Sbjct: 224 NLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGA 283

Query: 125 PPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKEL-EDALRSRVPQAILGQGYGMTEAGP 183
            P +  L         DLS++R  L G   + K++  +  +  +    L   YG TE+ P
Sbjct: 284 TPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQRGI---KLLSVYGSTESSP 340

Query: 184 VLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQI 238
              + L     P      + G      E+KV+D E   +LP    GE   RGP +
Sbjct: 341 HAVVNLD---DPLSRFMHTDGYAAAGVEIKVVD-EARKTLPPGCEGEEASRGPNV 391

Length = 547

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 94.1 bits (234), Expect = 4e-22
 Identities = 60/224 (26%), Positives = 96/224 (42%), Gaps = 17/224 (7%)

Query: 22  EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 81
           +P+D   + F+SGT  LPKGV LTH +L+ +    +   +P       DV++  LP FH 
Sbjct: 181 DPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPK----EDDVMMSFLPPFHA 236

Query: 82  YSLNSVLLCSLRAGAGVLL-MQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADY 140
           Y  NS  L  L +G  V+          ++E+I   +V+     P     + K     + 
Sbjct: 237 YGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQES 296

Query: 141 DLSSIRVVLSGAAPLGKELEDALRSRV----PQAILGQGYGMTEAGPVLSMCLGFAKQPF 196
            L S+R V+ G    G   +D+L        P   L QGYG TE  PV+++         
Sbjct: 297 CLPSLRFVVIG----GDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITI----NTVNS 348

Query: 197 PTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           P      G  +R  ++ ++  ET   +   + G +  RG  +  
Sbjct: 349 PKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFS 392

Length = 539

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 93.2 bits (232), Expect = 5e-22
 Identities = 70/228 (30%), Positives = 102/228 (44%), Gaps = 32/228 (14%)

Query: 22  EPDDPVALPFSSGTTGLPKGVVLTHKSLI-----TSVAQQVDGENPNLYLTNGDVVLCVL 76
             DDP  L ++SGTTG PKG +  H+ L+       +  ++     +++ T  D      
Sbjct: 86  GSDDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAPRPGDVFWTPADWAW--- 142

Query: 77  PLFHIYSLNSVLLCSLRAGAGVLL--MQKFEIGALLELIQRHRVSVAAVVPPLVLAL--A 132
               I  L  VLL +L  G  V+   MQ+F+      L++R+ V+  A +PP  L +   
Sbjct: 143 ----IGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTN-AFLPPTALKMMRR 197

Query: 133 KNPMVADYDLSSIRVVLSGAAPLGKEL----EDALRSRVPQAILGQGYGMTEAGPVLSMC 188
                A YDL  +R V SG   LG+EL     D L   V      + YG TEA  V+  C
Sbjct: 198 VGSERARYDL-RLRAVASGGESLGEELLEWARDELGLTV-----NEFYGQTEANLVVGNC 251

Query: 189 LGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP 236
                   P + GS G  V   E+ V+D   G  +P  + GEI ++ P
Sbjct: 252 ----AALGPARPGSMGKPVPGHEVAVVDDA-GRPVPPGEVGEIAVKRP 294

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 93.3 bits (232), Expect = 7e-22
 Identities = 77/248 (31%), Positives = 109/248 (43%), Gaps = 37/248 (14%)

Query: 15  QIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLIT-SVAQ-QVDGENPNLYLTNGDVV 72
              + A  PDD V + F+SGTTG PKGV ++H +LI  S+A+  + G   +      DV 
Sbjct: 163 TELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGED------DVY 216

Query: 73  LCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPL---VL 129
           L   PL HI  L+S  L  L  GA  +L+ KF+  A L+ I++H V+    VP +   ++
Sbjct: 217 LHTAPLCHIGGLSSA-LAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLI 275

Query: 130 ALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLS-MC 188
           +L +  M       S+R +L+G   L   L    +   P A L   YGMTEA   L+ M 
Sbjct: 276 SLTRKSM-TWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMT 334

Query: 189 LGFAKQ----------------PFPTKSGSC-GTVVRNAELKVIDPETGASLPHNQPGEI 231
           L                           G C G    + ELK+   E+         G I
Sbjct: 335 LHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRV------GRI 388

Query: 232 CIRGPQIM 239
             RGP +M
Sbjct: 389 LTRGPHVM 396

Length = 563

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 93.2 bits (232), Expect = 7e-22
 Identities = 70/216 (32%), Positives = 108/216 (50%), Gaps = 16/216 (7%)

Query: 26  PVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLY--LTNGDVVLCVLPLFHIYS 83
           P ++ ++SGTTG PKGV    ++  T        +   L   L  G   L   PL+H  +
Sbjct: 154 PQSMIYTSGTTGHPKGV---RRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYH-SA 209

Query: 84  LNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNP--MVADYD 141
            N+  L + R G  ++L  +F+   LL+LI+RHR++   +VP + + L K P  + A YD
Sbjct: 210 PNAYGLRAGRLGGVLVLQPRFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYD 269

Query: 142 LSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFA-KQPFPTKS 200
           +SS+R V+  AAP   +++ A+       I  + YG TE+G V      FA  +   +  
Sbjct: 270 VSSLRHVIHAAAPCPADVKRAMIEWWGPVIY-EYYGSTESGAVT-----FATSEDALSHP 323

Query: 201 GSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP 236
           G+ G     AEL+ +D E G  LP  + GEI  R  
Sbjct: 324 GTVGKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIA 358

Length = 509

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 93.2 bits (232), Expect = 7e-22
 Identities = 65/219 (29%), Positives = 99/219 (45%), Gaps = 19/219 (8%)

Query: 23  PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIY 82
           PDD   L ++SGTTG PKGV+ T  +L+ ++    +     L L   DV+L   P+ H  
Sbjct: 196 PDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAE----RLGLGADDVILMASPMAHQT 251

Query: 83  SLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDL 142
                L+  +  GA  +L   ++     ELI+   V+      P +  L +    +   +
Sbjct: 252 GFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPV 311

Query: 143 SSIRVVLSGAAPL-GKELEDALRSRVPQAILG----QGYGMTEAGPVLSMCLGFAKQPFP 197
           SS+R  L   AP+ G  +E A      +A LG      +GMTE G V    L     P  
Sbjct: 312 SSLRTFLCAGAPIPGALVERA------RAALGAKIVSAWGMTENGAVTLTKLD---DPDE 362

Query: 198 TKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP 236
             S + G  +   E++V+D + GA LP  Q G + +RG 
Sbjct: 363 RASTTDGCPLPGVEVRVVDAD-GAPLPAGQIGRLQVRGC 400

Length = 547

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 92.9 bits (231), Expect = 9e-22
 Identities = 66/223 (29%), Positives = 93/223 (41%), Gaps = 23/223 (10%)

Query: 16  IPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSL----ITSVAQQVDGENPNLYLTNGDV 71
            P  A++P D  A+ ++SGTTG  KGV   H         S           L +   DV
Sbjct: 172 APAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAED--------LEIGADDV 223

Query: 72  VLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLAL 131
           +   LPLFH  +LN+    +L AGA  +L  +F        ++RH  +V  ++  +V  L
Sbjct: 224 LYTTLPLFHTNALNA-FFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSIL 282

Query: 132 AKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGF 191
              P         +RV L    P    L  A R R    +L  GYG TE   V       
Sbjct: 283 LSQPARESDRAHRVRVALGPGVP--AALHAAFRERFGVDLL-DGYGSTETNFV------I 333

Query: 192 AKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR 234
           A      + GS G +    E +V+D E    LP  +PGE+ +R
Sbjct: 334 AVTHGSQRPGSMGRLAPGFEARVVD-EHDQELPDGEPGELLLR 375

Length = 542

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 92.7 bits (231), Expect = 1e-21
 Identities = 66/274 (24%), Positives = 108/274 (39%), Gaps = 54/274 (19%)

Query: 8   LSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLT 67
           L  A  D  P     PDDP  L  +SG+TG+PK VVLTH++++   A    G       T
Sbjct: 152 LRSAPPDA-PLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSA----GTVQVNGFT 206

Query: 68  NGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGA---------LLELIQRHRV 118
             DV L  +PL H+  +   ++  LR     L  Q+  +            L+LI R+RV
Sbjct: 207 PDDVSLNWMPLDHVGGI---VMLHLR--DVYLGCQQIHVPTDYILADPLRWLDLIDRYRV 261

Query: 119 SVAAVVPP-----LVLALAKNPMVADYDLSSIRVVLSGA----APLGKELEDAL-RSRVP 168
           ++     P     L+    +      +DLSS+R +++      A   +   + L    +P
Sbjct: 262 TITWA--PNFAFALLNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLP 319

Query: 169 QAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSG----------------------SCGTV 206
              +   +GM+E    ++   GF   P                              G  
Sbjct: 320 ADAIRPAFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRP 379

Query: 207 VRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           +    ++++D E GA LP  + G + +RGP +  
Sbjct: 380 IPGVAIRIVD-EDGALLPEGEVGRLQVRGPTVTS 412

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 90.8 bits (226), Expect = 4e-21
 Identities = 71/262 (27%), Positives = 115/262 (43%), Gaps = 47/262 (17%)

Query: 11  ADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGD 70
            D D +      PDD   + FSSG+TG PKGV+LTHK+L+T++   ++       +T+ D
Sbjct: 96  TDRDSLLS---LPDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEA----AEITSED 148

Query: 71  VVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM--QKFEIGALL--ELIQRHRVSVAAVVPP 126
           V L  +PL H   L    L     G    LM  + F    LL  +   +HR ++  +  P
Sbjct: 149 VFLSWMPLTHDMGLIGFHLTPTALGINQYLMPTRLFIRRPLLWLDKASQHRATI--LSSP 206

Query: 127 -----LVLALAKNPMVADYDLSSIRVVLSGAAP----LGKELEDAL-RSRVPQAILGQGY 176
                 +L   K   + D+DLSS+R++ +GA P    L +E  + +    +    +   Y
Sbjct: 207 NFGYKYLLKHFKTEKIIDWDLSSVRLIFNGAEPISADLCEEFLEKMAPFGLRPNAMYPVY 266

Query: 177 GMTEA----------GPVLSMCL--------GFAKQPFPTKSGS-----CGTVVRNAELK 213
           G+ EA           P  ++CL            +  P  S +      G+ +   E++
Sbjct: 267 GLAEATLAVSFPKPGEPFKTVCLDRNHLKVGVKIIEIDPKNSDAISFVEVGSPIDGCEIR 326

Query: 214 VIDPETGASLPHNQPGEICIRG 235
           ++D + G  LP    G I I+G
Sbjct: 327 IVD-DAGEVLPDRTIGHIQIKG 347

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 90.4 bits (225), Expect = 8e-21
 Identities = 66/233 (28%), Positives = 106/233 (45%), Gaps = 48/233 (20%)

Query: 23  PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQ---QVDGENPNLYLTNGDVVLCVLPLF 79
           PDDP  + F+SG+ G PKGVVL+H++L+ + AQ   ++D        +  D V   LP+F
Sbjct: 792 PDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARID-------FSPEDKVFNALPVF 844

Query: 80  HIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLA--------- 130
           H + L   L+  L +G  V L           L  R       ++P L+           
Sbjct: 845 HSFGLTGGLVLPLLSGVKVFLYPS-------PLHYR-------IIPELIYDTNATILFGT 890

Query: 131 ---LAKNPMVAD-YDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLS 186
              L      A  YD  S+R V +GA  + +E       +    IL +GYG+TE  PV++
Sbjct: 891 DTFLNGYARYAHPYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRIL-EGYGVTETAPVIA 949

Query: 187 MCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
           +       P   K+G+ G ++   E ++ +P  G     ++ G + +RGP +M
Sbjct: 950 L-----NTPMHNKAGTVGRLLPGIEYRL-EPVPGI----DEGGRLFVRGPNVM 992

Length = 1140

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 90.2 bits (224), Expect = 9e-21
 Identities = 79/280 (28%), Positives = 118/280 (42%), Gaps = 59/280 (21%)

Query: 7   VLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYL 66
           +L++      P    +P+D   + ++SGTTG PKGVVLTH +LI +VA    G + +   
Sbjct: 204 LLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVA----GSSLSTKF 259

Query: 67  TNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPP 126
              DV +  LPL HIY   + ++  L  G  V   Q  +   L++ +   R ++   VP 
Sbjct: 260 YPSDVHISYLPLAHIYERVNQIVM-LHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPR 317

Query: 127 L--------------------------------VLALAKNP----------MVADYDLSS 144
           L                                 L   KNP           +       
Sbjct: 318 LYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGR 377

Query: 145 IRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCG 204
           +R + SGA+PL  ++ + LR      +L +GYGMTE   V+S             SG  G
Sbjct: 378 VRFMSSGASPLSPDVMEFLRICFGGRVL-EGYGMTETSCVISGM-----DEGDNLSGHVG 431

Query: 205 TVVRNAELKVID-PE---TGASLPHNQPGEICIRGPQIMK 240
           +     E+K++D PE   T    P+ + GEIC+RGP I K
Sbjct: 432 SPNPACEVKLVDVPEMNYTSEDQPYPR-GEICVRGPIIFK 470

Length = 651

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 89.0 bits (221), Expect = 1e-20
 Identities = 63/218 (28%), Positives = 93/218 (42%), Gaps = 25/218 (11%)

Query: 24  DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS 83
           D    L F+SGTTG PK V  T ++   S      G   NL  T  D  L  LPL+HI  
Sbjct: 111 DQIATLMFTSGTTGKPKAVPHTFRNHYASAV----GSKENLGFTEDDNWLLSLPLYHISG 166

Query: 84  LNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLS 143
           L S+L   L  GA + ++ KF    LLE+I   RV+  ++VP  +  L            
Sbjct: 167 L-SILFRWLIEGATLRIVDKF--NQLLEMIANERVTHISLVPTQLNRLLD----EGGHNE 219

Query: 144 SIRVVLSGAAPLGKEL-EDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGS 202
           ++R +L G + +   L E+A +  +P   +   YGMTE     S       +    +   
Sbjct: 220 NLRKILLGGSAIPAPLIEEAQQYGLP---IYLSYGMTETC---SQVTTATPEMLHARPDV 273

Query: 203 CGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
            G  +   E+K+              GEI ++G  +MK
Sbjct: 274 -GRPLAGREIKIKVDNKEGH------GEIMVKGANLMK 304

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 87.7 bits (218), Expect = 5e-20
 Identities = 69/258 (26%), Positives = 102/258 (39%), Gaps = 57/258 (22%)

Query: 11  ADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGD 70
           A E        EP+D   + ++SGTTG PKGV+L+  +   +    +      + LT  D
Sbjct: 124 ATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAAQGTI----EIIGLTPND 179

Query: 71  VVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVP----- 125
            +L  LPL HI     V   SL +GA V  ++  +       +QR R +V   VP     
Sbjct: 180 RLLSYLPLAHIAERVIVEGGSLYSGAEVFFVESLD--TFAADLQRARPTVFFSVPRLWTK 237

Query: 126 --------------------PLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRS 165
                               P++ +L K  ++    L   R+  SGAAP+   L    R 
Sbjct: 238 FQQGILAKLPPEKLNLLLKIPILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYRK 297

Query: 166 RVPQAILG----QGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGA 221
                 LG    +GYGMTE     ++     ++      G+ G  +   ELK I  +   
Sbjct: 298 ------LGLPICEGYGMTENFAYSTLNYPGDRRI-----GTVGKPIPGVELK-ISED--- 342

Query: 222 SLPHNQPGEICIRGPQIM 239
                  GEI IR P +M
Sbjct: 343 -------GEILIRSPGLM 353

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 87.3 bits (217), Expect = 7e-20
 Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 20/221 (9%)

Query: 19  VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPL 78
           +   PDDP  + ++SG+TG PKGVV+TH+++       +  E   L +  GD VL    +
Sbjct: 94  LTSSPDDPAYVIYTSGSTGKPKGVVITHRNICNF----LRAEGAILGIRPGDRVLQFASI 149

Query: 79  FHIYSLNSVLLCSLRAGAGVLLMQKFEIGA-LLELIQRHRVSVAAVVPPLVLALAKNPMV 137
               S+  +   +L AG  +++  +      L E + R RV+VA + P    +L    ++
Sbjct: 150 AFDVSILEIFT-TLLAGGTLVIPPEELRLEDLAEFLNRLRVTVAHLTP----SLLA--LL 202

Query: 138 ADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFP 197
              D+ S+R ++ G     + L D   S+  + +    YG TEA    +       +  P
Sbjct: 203 DPEDVPSLRTLILGGEACPQALVDRW-SKPRRLL--NTYGPTEATVTATAS-----RLTP 254

Query: 198 TKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQI 238
            K  + G  + N    V+DP+    +P    GE+CI GP +
Sbjct: 255 GKPVNIGRPLPNYTCWVLDPDLEPLVPIGAVGELCIGGPGV 295

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 87.5 bits (217), Expect = 7e-20
 Identities = 67/236 (28%), Positives = 93/236 (39%), Gaps = 16/236 (6%)

Query: 5   FTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNL 64
              L        P    +  +      S GTTG PK +  TH     SV    +      
Sbjct: 170 EAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAE----IC 225

Query: 65  YLTNGDVVLCVLPLFHIYSLNSV-LLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAV 123
                 V LC LP  H + L+S   L    AG  V+L           LI+RH V+V A+
Sbjct: 226 GFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTAL 285

Query: 124 VPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAI---LGQGYGMTE 180
           VPPL     +       DLSS+R++  G    G  L   L  RVP  +   L Q +GM E
Sbjct: 286 VPPLASLWLQAAEWERADLSSLRLLQVG----GARLSATLARRVPAVLGCQLQQVFGMAE 341

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP 236
            G V    L    +      G    +  + E++V+D + G  +   + GE+  RGP
Sbjct: 342 -GLVNYTRLDDPPEIIIHTQGR--PLSPDDEVRVVDAD-GNPVAPGEVGELLTRGP 393

Length = 542

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 87.5 bits (217), Expect = 7e-20
 Identities = 61/217 (28%), Positives = 97/217 (44%), Gaps = 20/217 (9%)

Query: 24  DDPVALPFSSGTTGLPKGVVLTHKSLITSV---AQQVDGENPNLYLTNGDVVLCVLPLFH 80
           DD   + F+SGTTGLPKG +  H+ ++       + V    P+      DV +   PL  
Sbjct: 147 DDVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPD------DVFIGSPPLAF 200

Query: 81  IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADY 140
            + L  ++L  LR GA  +L+++     LL+ IQ HR ++    P    A+     V  +
Sbjct: 201 TFGLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTAYRAMLI--KVKAF 258

Query: 141 DLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFP-TK 199
           D+SS+R  +S    L  ++      R    I+  G G TE      M   F        K
Sbjct: 259 DISSLRKCVSAGETLPAKVWQDWYERTGLKII-DGIGATE------MLHIFISANEENAK 311

Query: 200 SGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP 236
            G+ G  V   E +++D + G  +P  + G + +RGP
Sbjct: 312 PGATGKPVPGYEARIVD-DQGNEVPRGEAGRLAVRGP 347

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 85.8 bits (213), Expect = 1e-19
 Identities = 54/231 (23%), Positives = 88/231 (38%), Gaps = 28/231 (12%)

Query: 25  DPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYL----------TNGDVVLC 74
           D + + ++ GTTG+PKGV+   + +   +    D       L            G   L 
Sbjct: 4   DDLYMLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRFLP 63

Query: 75  VLPLFHIYSLNSVLLCSLRAGAGVLLM--QKFEIGALLELIQRHRVSVAAVV-----PPL 127
             PL H       L  +L AG  V+L+   KF+   +   +++HRV+   +V      PL
Sbjct: 64  ACPLMHGAGQWLALS-ALFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFARPL 122

Query: 128 VLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSM 187
           + AL        YDLSS+R + S  A    E++  L   +P   L    G +E G     
Sbjct: 123 LEALEAA---GRYDLSSLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASETG---GG 176

Query: 188 CLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLP-HNQPGEICIRGPQ 237
               ++    + +   G      +  V+D +     P   + G I   G  
Sbjct: 177 GSSVSRAGGASAT---GKFELGPDTVVLDEDGSEVPPGSGEVGWIARGGRV 224

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 85.3 bits (211), Expect = 4e-19
 Identities = 63/238 (26%), Positives = 104/238 (43%), Gaps = 17/238 (7%)

Query: 3   LHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGEN- 61
           +    L   + +Q    A + DDP    +SSG+TG+PKGVV TH +           E  
Sbjct: 140 VQLAELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNP------YWTAELY 193

Query: 62  --PNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM-QKFEIGALLELIQRHRV 118
               L +   DVV     LF  Y L + L   +  GA  +LM ++    A+ + ++RH+ 
Sbjct: 194 ARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQP 253

Query: 119 SVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM 178
           ++   VP L  A+  +P +   D   +R+  S    L  E+    ++R    I+  G G 
Sbjct: 254 TIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIV-DGIGS 312

Query: 179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP 236
           TE   +       +  P   + G+ G  V    L+++  + G  +   +PGE+ I GP
Sbjct: 313 TEMLHIF-----LSNLPGDVRYGTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGP 364

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 84.2 bits (209), Expect = 9e-19
 Identities = 54/236 (22%), Positives = 83/236 (35%), Gaps = 35/236 (14%)

Query: 23  PDDPVALPFSSGTTGLPKGVVLTHKSL---------------ITSVAQQVDGENPNLYLT 67
           PDD + L ++ GTTG+PKGV+   + +               I    +            
Sbjct: 163 PDD-LYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGP--- 218

Query: 68  NGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLL-MQKFEIGALLELIQRHRVSVAAVV-- 124
            G       PL H     +           VLL   +F+   +   I+R +V+V  +V  
Sbjct: 219 -GMRRFPAPPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGD 277

Query: 125 ---PPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181
               PL+ AL        YDLSS+  + SG A     +++AL   +P  +L    G +E 
Sbjct: 278 AMARPLLDALEAR---GPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSET 334

Query: 182 GPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLP-HNQPGEICIRGP 236
           G       G         +G            V+D +     P   + G I  RG 
Sbjct: 335 G---FGGSGTVA-KGAVHTGG-PRFTIGPRTVVLDEDGNPVEPGSGEIGWIARRGH 385

Length = 533

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 83.6 bits (207), Expect = 2e-18
 Identities = 64/223 (28%), Positives = 102/223 (45%), Gaps = 23/223 (10%)

Query: 19  VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITS---VAQQVDGENPNLYLTNGDVVLCV 75
             +  DD   + F+SGTT  PKGVV+TH +L  +    A Q         L + DV L V
Sbjct: 168 PPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCA-------LRDDDVYLTV 220

Query: 76  LPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNP 135
           +P FHI    +  + +  AGA  +L++K+   A    + ++R ++   +P ++  L   P
Sbjct: 221 MPAFHIDCQCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQP 280

Query: 136 MVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLG---FA 192
             A+     +R V+     L  + +DA   R    +L   YGMTE    +   +G     
Sbjct: 281 PSANDRQHCLREVMF-YLNLSDQEKDAFEERFGVRLL-TSYGMTET---IVGIIGDRPGD 335

Query: 193 KQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRG 235
           K+ +P    S G      E ++ D +    LP  + GEICI+G
Sbjct: 336 KRRWP----SIGRPGFCYEAEIRD-DHNRPLPAGEIGEICIKG 373

Length = 517

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 83.1 bits (206), Expect = 3e-18
 Identities = 57/213 (26%), Positives = 92/213 (43%), Gaps = 27/213 (12%)

Query: 32  SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCS 91
           +SGTTG PKG      S +  +A  +    P      G+  L   P+FH     + L  +
Sbjct: 215 TSGTTGTPKGAPRPEPSPLAPLAGLLS-RVP---FRAGETTLLPAPMFHATGW-AHLTLA 269

Query: 92  LRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLV---LALAKNPMVADYDLSSIRVV 148
           +  G+ V+L ++F+  A LE I +H+ +   VVP ++   L L    ++A YD SS++++
Sbjct: 270 MALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPE-VLAKYDTSSLKII 328

Query: 149 LSGAAPLGKELEDALRSRVPQAILGQGYGMTE------AGPVLSMCLGFAKQPFPTKSGS 202
               + L  EL           +L   YG TE      A P        A+ P     G+
Sbjct: 329 FVSGSALSPELATRALEAFGP-VLYNLYGSTEVAFATIATPE-----DLAEAP-----GT 377

Query: 203 CGTVVRNAELKVIDPETGASLPHNQPGEICIRG 235
            G   +   +K++D E G  +P    G I +  
Sbjct: 378 VGRPPKGVTVKILD-ENGNEVPRGVVGRIFVGN 409

Length = 549

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 82.6 bits (205), Expect = 3e-18
 Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 41/236 (17%)

Query: 18  EVAIEPDDPVA-------LPFSSGTTGLPKGVV--LTHKSLITSVAQQVDGENPNLYLTN 68
            +A +PD P+A       + +SSGTTG PKG+   L       +    +      +Y   
Sbjct: 127 ALAAQPDTPIADETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGP 186

Query: 69  GDVVLCVLPLFH----IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVV 124
             V L   PL+H     + +++     L  G  V++M+KF+    L LI+R+RV+ + +V
Sbjct: 187 DSVYLSPAPLYHTAPLRFGMSA-----LALGGTVVVMEKFDAEEALALIERYRVTHSQLV 241

Query: 125 PPLVLALAKNP--MVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQA-------ILGQG 175
           P + + + K P  + A YD+SS+RV +  AAP   E        V +A       I+ + 
Sbjct: 242 PTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVE--------VKRAMIDWWGPIIHEY 293

Query: 176 YGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEI 231
           Y  +E G    + +  ++  +    GS G  V   E++++D E G  LP  + G +
Sbjct: 294 YASSEGG---GVTVITSED-WLAHPGSVGKAV-LGEVRILD-EDGNELPPGEIGTV 343

Length = 502

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 82.1 bits (203), Expect = 5e-18
 Identities = 66/227 (29%), Positives = 99/227 (43%), Gaps = 16/227 (7%)

Query: 14  DQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVL 73
           + +     + D+      S G+TG PK +  TH     SV + V+      +LT     L
Sbjct: 172 EPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVE----ICWLTQQTRYL 227

Query: 74  CVLPLFHIYSLNSV-LLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALA 132
           C LP  H Y L+S   L    AG  V+L           LI+RH+V+V A+VPP V    
Sbjct: 228 CALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWM 287

Query: 133 KNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAI---LGQGYGMTEAGPVLSMCL 189
           +    +  DLSS++++  G    G +   A   RVP      L Q +GM E G V    L
Sbjct: 288 QAASKSRADLSSLKLLQVG----GAKFSAAAARRVPAVFGCQLQQVFGMAE-GLVNYTRL 342

Query: 190 GFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP 236
               +   T  G    +  + E++V+D + G  +   + G +  RGP
Sbjct: 343 DDPAEIIFTTQGR--PMSPDDEVRVVD-DHGNPVAPGETGMLLTRGP 386

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 79.7 bits (197), Expect = 4e-17
 Identities = 71/276 (25%), Positives = 116/276 (42%), Gaps = 50/276 (18%)

Query: 7   VLSEADEDQIPEVAIE-----PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQV-DGE 60
           VLS A    +PE  +      PDD   L +SSG+T  P+GV++TH++L+ ++     DG 
Sbjct: 154 VLSHAWFKALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDG- 212

Query: 61  NPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM--QKFEIGAL--LELIQRH 116
              L +  GD  +  LP +H   L   LL  +     V  +  + F    L  L+LI R+
Sbjct: 213 ---LKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRN 269

Query: 117 RVSVAAVVPPLVLALAKNPM----VADYDLSSIRVVLSGA----APLGKELEDALRSR-- 166
           R ++ +  PP    L    +    +A+ DLS  RV   GA      +  +  +A      
Sbjct: 270 RGTI-SYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGF 328

Query: 167 VPQAILGQGYGMTEAGPVLSM----------------------CLGFAKQPFPTKS-GSC 203
             +A +   YG+ EA   +S                        +    +    ++  +C
Sbjct: 329 DDKAFMPS-YGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNC 387

Query: 204 GTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
           G  +   E+++ + E G  LP    G IC+RGP +M
Sbjct: 388 GKALPGHEIEIRN-EAGMPLPERVVGHICVRGPSLM 422

Length = 579

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 79.5 bits (196), Expect = 4e-17
 Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 15/223 (6%)

Query: 20  AIEPDDPVALPFSSGTTGLPKGVVLTHKSLI-TSVAQQVDGENPNLYLTNGDVVLCVLPL 78
           +I P+    + F+SGT+G PKGV+L+ ++L  T+    V G      +      LC  P+
Sbjct: 131 SIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGR-----VDAHSSFLCDAPM 185

Query: 79  FHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVA--AVVPPLVLALAKNPM 136
           FHI  L + +   L  G  +L+   FE    L  +    + +     VP +  A    P 
Sbjct: 186 FHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG 245

Query: 137 VADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAI-LGQGYGMTEAGPVLSMCLGFAKQP 195
                L  +  + +G AP      + +   +   I +  G+GM+EAG V  M +      
Sbjct: 246 FDAAALRHLTALFTGGAP---HAAEDILGWLDDGIPMVDGFGMSEAGTVFGMSVDCDV-- 300

Query: 196 FPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQI 238
              K+G+ G      + +V+D + G   P   PGE+ +RGP +
Sbjct: 301 IRAKAGAAGIPTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNL 342

Length = 488

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 77.4 bits (191), Expect = 2e-16
 Identities = 65/236 (27%), Positives = 103/236 (43%), Gaps = 23/236 (9%)

Query: 5   FTVLSEADEDQIPEVAIEPDDP--VALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENP 62
           F   +EA     P   I  D+     + +SSGTTG PKG+              +     
Sbjct: 135 FVGYAEAVAGL-PATPI-ADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQ 192

Query: 63  NLY-LTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVA 121
            L+   +  V L   PL+H     +V+L  +R G  V++M+ F+    L LI+ + V+  
Sbjct: 193 RLWGFRSDMVYLSPAPLYHSAPQRAVML-VIRLGGTVIVMEHFDAEQYLALIEEYGVTHT 251

Query: 122 AVVPPLVLALAKNPMVA--DYDLSSIRVVLSGAAPLGKEL-EDALRSRVPQAILGQGYGM 178
            +VP +   + K P      YDLSS+ V +  AAP   ++ E  +    P  I+ + Y  
Sbjct: 252 QLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGP--IIHEYYAA 309

Query: 179 TEAGPVLSMCLGFA---KQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEI 231
           TE        LGF     + +    G+ G  +   +L ++D + GA LP  +PG I
Sbjct: 310 TEG-------LGFTACDSEEWLAHPGTVGRAMF-GDLHILD-DDGAELPPGEPGTI 356

Length = 511

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 76.9 bits (189), Expect = 3e-16
 Identities = 64/237 (27%), Positives = 98/237 (41%), Gaps = 16/237 (6%)

Query: 6   TVLSEADEDQIPEVA-------IEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVD 58
            VL   + D  P+ A         PDD   L ++SGTTG PKGV+ T  +L +++    +
Sbjct: 170 RVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAE 229

Query: 59  GENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRV 118
                L L  GDV+L   P+ H       L+  L   A  +L   +      ELI+   V
Sbjct: 230 ----RLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGV 285

Query: 119 SVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM 178
           +      P +  L +    +   + S+   L   AP+   L +     +   I+   +GM
Sbjct: 286 TFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGALIV-SAWGM 344

Query: 179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRG 235
           TE G V       A +     S + G  +   E+KVID   GA L   + G + +RG
Sbjct: 345 TENGAVTVTEPDDALE---KASTTDGRPLPGVEVKVIDAN-GAKLSQGETGRLLVRG 397

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 76.7 bits (189), Expect = 3e-16
 Identities = 63/226 (27%), Positives = 93/226 (41%), Gaps = 16/226 (7%)

Query: 18  EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLP 77
           E A +PD    L  +SGTT  PK V+    +L+                  G V+L  LP
Sbjct: 175 ERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARA----YGYDPGAVLLAALP 230

Query: 78  LFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVS-VAAVVPPLVLALAKNPM 136
              ++  ++ LL +L  GA ++    F+       ++RHRV+        L   L     
Sbjct: 231 FCGVFGFST-LLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAG- 288

Query: 137 VADYDLSSIRVVLSGA-APLGKELEDALRSR-VPQAILGQGYGMTEAGPVLSMCLGFAKQ 194
               D  S R+    + AP   EL    R+R VP   L   YG +E   +++  L  A  
Sbjct: 289 -ERADFPSARLFGFASFAPALGELAALARARGVPLTGL---YGSSEVQALVA--LQPATD 342

Query: 195 PFPTKSGSCGTVVR-NAELKVIDPETGASLPHNQPGEICIRGPQIM 239
           P   +    G      A ++  DP+ GA LP  + GEI IR P +M
Sbjct: 343 PVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLM 388

Length = 540

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 75.7 bits (187), Expect = 7e-16
 Identities = 66/232 (28%), Positives = 106/232 (45%), Gaps = 24/232 (10%)

Query: 17  PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVL 76
           P   ++PDD   + F+SG+TG PKGV++TH++ + +    +   N    +   D VL + 
Sbjct: 119 PPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNT----ILDVNRRFGVGPADRVLALS 174

Query: 77  PLFHIYSLNSV--LLCSLRAGAGVLLM---QKFEIGALLELIQRHRVSVAAVVPP----L 127
            L     L SV  +  +L AGA ++L    ++ +     EL+QRH V+V   VP     L
Sbjct: 175 ALHF--DL-SVYDIFGALSAGAALVLPDEARRRDPDHWAELVQRHGVTVWNSVPALMDML 231

Query: 128 VLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQA-ILGQGYGMTEAGPVLS 186
           +             L S+R+V+     +  +L   LR+  P A ++  G G TEA  + S
Sbjct: 232 LTYAEDAAR----LLPSLRLVMLSGDWIPLDLPRRLRALAPGARLVSLG-GATEAS-IWS 285

Query: 187 MCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQI 238
           +           +S   G  + N +  V+D E G   P   PGE+ I G  +
Sbjct: 286 IYYPIDDVDPDWRSIPYGKPLPNQKFYVLD-EDGRDCPDWVPGELYIGGVGV 336

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 68/239 (28%), Positives = 104/239 (43%), Gaps = 35/239 (14%)

Query: 24  DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS 83
           DDP A+ F+SG+TG PKGVV TH++     A Q+D       +  GD  L   P F   +
Sbjct: 85  DDPAAILFTSGSTGPPKGVVYTHRTF----AAQIDALRSLYGIREGDRDLAAFPPF---A 137

Query: 84  LNSVLL--------CSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNP 135
           L    L            A A +      +   L + I+    S     P L+  +A+  
Sbjct: 138 LFGPALGVTTVIPAMDPTAPAAL------DPAKLAQAIREIGASCVFGSPALLKNVARYC 191

Query: 136 MVADYDLSSIRVVLSGAAPLGKE-LEDALRSRVPQAILGQGYGMTEAGPVLSM----CLG 190
                 L S+R VLS  AP+  + L   + + +P+A +   YG TEA PV S+     L 
Sbjct: 192 EENGIQLPSLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATEALPVASIEGREVLA 251

Query: 191 FAKQPFPTKSGSC-GTVVRNAELKVIDPETGA--------SLPHNQPGEICIRGPQIMK 240
            + +P    +G C G  V   ++++I  + G          LP  + GEI + GP + +
Sbjct: 252 ESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTR 310

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 55/217 (25%), Positives = 93/217 (42%), Gaps = 25/217 (11%)

Query: 25  DPVALPFSSGTTGLPKGVVLTHKSLITS--VAQQVDGENPNLYLTNGDVVLCVLPLFHIY 82
           DP    ++SGTTGLPK  +++H+  + +  V   +    P+      DV+   LPL+H  
Sbjct: 82  DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPD------DVLYLCLPLYHSN 135

Query: 83  SLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDL 142
           +L      +L AGA + L +KF        ++R+  +    V  L   L   P   D   
Sbjct: 136 ALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGELCRYLLNQPEKPDDRD 195

Query: 143 SSIRVVL-SGAAP-LGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKS 200
             +R ++ +G  P +  E ++  R  VP+ +  + YG TE        +GF       K 
Sbjct: 196 HPLRKIIGNGLRPDIWDEFKE--RFGVPRIV--EFYGSTEGN------VGFIN--LFNKP 243

Query: 201 GSCGTVVRNAELKVIDPETGA-SLPHNQPGEICIRGP 236
           G+ G  +  A + V+  +        +  G  CI+ P
Sbjct: 244 GAVG-RLPPAAIAVVKYDVETEEPIRDANGF-CIKVP 278

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 73.6 bits (181), Expect = 4e-15
 Identities = 65/237 (27%), Positives = 98/237 (41%), Gaps = 37/237 (15%)

Query: 4   HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLIT---SVAQQVDGE 60
               L+   + + P    +PDD   L F+SGT+G PK V  TH+ + +    +AQ+    
Sbjct: 132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFG-- 189

Query: 61  NPNLYLTNGDVVLCVLPLFHIYSLNSVLLC---SLRAGAGVLLMQKFEIGALLELIQRHR 117
                L   DV    +PLFH    N+V+     +L AGA + L +KF     L  ++R+ 
Sbjct: 190 -----LGPDDVCYVSMPLFHS---NAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYG 241

Query: 118 VSVAAVV-PPLVLALAKNPMVADYDLSSIRVVL--SGAAPLGKELEDALRSRVPQAILGQ 174
            + A  V  PL   LA      D D + +R+V    GA              V       
Sbjct: 242 ATYANYVGKPLSYVLATPERPDDAD-NPLRIVYGNEGAPGDIARFARRFGCVVV-----D 295

Query: 175 GYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEI 231
           G+G TE G      +   + P  T  G+ G +     + ++DP+TG   P   P E 
Sbjct: 296 GFGSTEGG------VAITRTP-DTPPGALGPLP--PGVAIVDPDTGTECP---PAED 340

Length = 529

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 70/242 (28%), Positives = 106/242 (43%), Gaps = 54/242 (22%)

Query: 18  EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQ--QVDGENPNLYLTNGDVVLCV 75
           +V  +P+D   + F+SG+ G PKGVV +HKSL+ +V Q   +    PN      D  +  
Sbjct: 359 QVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPN------DRFMSA 412

Query: 76  LPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVL------ 129
           LPLFH + L   L   L  GA V L           L  R       +VP LV       
Sbjct: 413 LPLFHSFGLTVGLFTPLLTGAEVFLYPS-------PLHYR-------IVPELVYDRNCTV 458

Query: 130 -----------ALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM 178
                      A   NP    YD + +R V++GA  L +  +   + +    IL +GYG+
Sbjct: 459 LFGTSTFLGNYARFANP----YDFARLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGV 513

Query: 179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQI 238
           TE  PV+S+ +     P   K G+ G ++   + +++    G      Q G + ++GP I
Sbjct: 514 TECAPVVSINV-----PMAAKPGTVGRILPGMDARLL-SVPGIE----QGGRLQLKGPNI 563

Query: 239 MK 240
           M 
Sbjct: 564 MN 565

Length = 718

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 64/250 (25%), Positives = 100/250 (40%), Gaps = 51/250 (20%)

Query: 19  VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVD------GENPNLYLTNGDVV 72
             + PDD  A+ F+SG+TG PKGVV TH         Q++      G  P      G++ 
Sbjct: 169 ADLAPDDMAAILFTSGSTGTPKGVVYTHGMF----EAQIEALREDYGIEP------GEID 218

Query: 73  LCVLPLFHIYSLNSVLLCSLRAGAGVLLM----------QKFEIGALLELIQRHRVSVAA 122
           L   PLF ++        +L   + +  M           K     L   I+R+ V+   
Sbjct: 219 LPTFPLFALFGP------ALGMTSVIPDMDPTRPATVDPAK-----LFAAIERYGVTNLF 267

Query: 123 VVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQ-AILGQGYGMTEA 181
             P L+  L +        L S+R V+S  AP+   + +  R+ +P  A +   YG TEA
Sbjct: 268 GSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEA 327

Query: 182 GPVLSM----CLGFAKQPFPTKSGSC-GTVVRNAELKVIDPETGA--------SLPHNQP 228
            P+ S+     L   +      +G C G  V   E+++I               L   + 
Sbjct: 328 LPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEI 387

Query: 229 GEICIRGPQI 238
           GEI + GP +
Sbjct: 388 GEIVVAGPMV 397

Length = 552

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 25/189 (13%)

Query: 8   LSEADEDQIPEVA--------IEPDDPVALPFSSGTTGLPKGVVLTHKSLITSV---AQQ 56
           L +      PE A         EP+ P  + ++SGTTGLPKG V+  ++  + V   + Q
Sbjct: 128 LGDLVGLGEPESAGPPIEDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQ 187

Query: 57  VDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRH 116
                  L     +VVL ++PL+H+    +VL+ +L      +++++F+    L+LI++ 
Sbjct: 188 A-----GLRHGRHNVVLGLMPLYHVIGFFAVLVAALALDGTYVVVEEFDPADALKLIEQE 242

Query: 117 RVSVAAVVPPLVLALAKNPMVADYDLSSIR-VVLSGAAPLGKELEDALRSRVPQAILGQG 175
           RV+     P  + ALA     A   L S+  V  +GA      + DA+  RV Q + G+ 
Sbjct: 243 RVTSLFATPTHLDALAAAAEGAPLKLDSLEHVTFAGAT-----MPDAVLERVNQHLPGEK 297

Query: 176 ---YGMTEA 181
              YG TEA
Sbjct: 298 VNIYGTTEA 306

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 63/216 (29%), Positives = 103/216 (47%), Gaps = 15/216 (6%)

Query: 23  PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIY 82
           PD P  + ++SGTTG PKGVVL+ +    ++A  +D        T  DV++  LPLFH++
Sbjct: 127 PDAPALIVYTSGTTGPPKGVVLSRR----AIAADLDALAEAWQWTADDVLVHGLPLFHVH 182

Query: 83  SLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDL 142
            L   +L  LR G   +   +    A  + +     ++   VP +   +A +P  A   L
Sbjct: 183 GLVLGVLGPLRIGNRFVHTGRPTPEAYAQALSE-GGTLYFGVPTVWSRIAADPEAAR-AL 240

Query: 143 SSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGS 202
              R+++SG+A L   + D L +      + + YGMTE    LS      +     + G 
Sbjct: 241 RGARLLVSGSAALPVPVFDRLAALTGHRPV-ERYGMTETLITLS-----TRADGERRPGW 294

Query: 203 CGTVVRNAELKVIDPETGASLPHNQP--GEICIRGP 236
            G  +   E +++D E G  +PH+    GE+ +RGP
Sbjct: 295 VGLPLAGVETRLVD-EDGGPVPHDGETVGELQVRGP 329

Length = 471

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 71.3 bits (175), Expect = 2e-14
 Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 21/225 (9%)

Query: 28  ALPFSSGTTGLPKGVVLTHKS--LITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLN 85
            + ++SGTTG PKGV+ +H+S  L   +A   D     L  +  D +L V+PLFH  S  
Sbjct: 181 GMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDA----LGTSAADTMLPVVPLFHANSWG 236

Query: 86  SVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSI 145
                       V+   K +  ++ EL+   +V+  A VP + L L +        L  +
Sbjct: 237 IAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHL 296

Query: 146 RVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGT 205
           ++V+ G + + + +  A      +      +GMTE  P+ +  L   K PF    G    
Sbjct: 297 KMVVCGGSAMPRSMIKAFEDMGVEVR--HAWGMTEMSPLGT--LAALKPPFSKLPGDARL 352

Query: 206 VVR--------NAELKVIDPETGASLPH--NQPGEICIRGPQIMK 240
            V           E+K+ D   G  LP      G + +RGP +  
Sbjct: 353 DVLQKQGYPPFGVEMKITDDA-GKELPWDGKTFGRLKVRGPAVAA 396

Length = 542

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 71.5 bits (175), Expect = 2e-14
 Identities = 62/233 (26%), Positives = 94/233 (40%), Gaps = 13/233 (5%)

Query: 8   LSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLT 67
           LSE  +      A+  D    + ++SG+TG PKGV + H++L    A  ++       L 
Sbjct: 350 LSEIPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRAL----ANLLNDAGARFGLD 405

Query: 68  NGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFE--IGALLELIQRHRVSVAAVVP 125
             D VL +  L    S+  +    L     VL     +    ALLEL++   ++V  +VP
Sbjct: 406 ADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVP 465

Query: 126 PLVLALAKNPMVAD--YDLSSIRVVLSGAAPLGKEL-EDALRSRVPQAILGQGYGMTEAG 182
            L+  L    +  D       +R +LSG   L   L +  L+       L   YG TEA 
Sbjct: 466 LLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEAT 525

Query: 183 PVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRG 235
                    A+          G  V N +L ++D +    LP   PGE+ I G
Sbjct: 526 LDAPSFPISAE---LESRVPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAG 574

Length = 642

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 70.4 bits (173), Expect = 5e-14
 Identities = 74/263 (28%), Positives = 111/263 (42%), Gaps = 42/263 (15%)

Query: 12  DEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDV 71
             D I  V    DD   +  +SG+TG PK V +TH +L  +            +    DV
Sbjct: 140 AADPIDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAE---FDVETDV 196

Query: 72  VLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ--KFEIGALL--ELIQRHRVSVAAVVPPL 127
           ++  LPLFH   +   L   +  GA ++ +    F    LL  ELI ++R ++ A  P  
Sbjct: 197 MVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTA-APNF 255

Query: 128 ---VLA--LAKNPMVADYDLSSIRVVLSGAAPLGKE-LEDALRSRV-----PQAILGQGY 176
              +LA  L +      +DLSS+R  L+GA P+    +ED L +       P+AIL   Y
Sbjct: 256 AYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAIL-PAY 314

Query: 177 GMTEAGPVLSMC---------------LGFAKQPFPTKSG------SCGTVVRNAELKVI 215
           GM EA   +S                 L   ++  P   G      + G  +   E++V+
Sbjct: 315 GMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVV 374

Query: 216 DPETGASLPHNQPGEICIRGPQI 238
           D E G  LP    G I +RG  +
Sbjct: 375 D-EDGQVLPPRGVGVIELRGESV 396

Length = 545

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 68/256 (26%), Positives = 106/256 (41%), Gaps = 78/256 (30%)

Query: 25  DPVALPFSSGTTGLPKGVVLTHK-SLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS 83
           D +AL ++SGTTG PKGVV  H+ + + +++  +        +    V L  LP+FH   
Sbjct: 183 DAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWG-----MPKHPVYLWTLPMFH--- 234

Query: 84  LNSVLLC---------SLRAGAGVLLMQKFEIGALLELIQRHRVS--VAAVVPPLVL-AL 131
                 C         + RAG  V L +K +   + +LI+ H V+    A   P+VL AL
Sbjct: 235 ------CNGWCFPWTVAARAGTNVCL-RKVDPKLIFDLIREHGVTHYCGA---PIVLSAL 284

Query: 132 AKNPMVADYDLS-SIRVVLSGAAPLGKELEDALRSRVPQAI---LGQGYGMTEA-GPVLS 186
              P      +   +  +++GAAP    +         + I   L   YG+TE  GP  +
Sbjct: 285 INAPAEWRAGIDHPVHAMVAGAAPPAAVIAKM------EEIGFDLTHVYGLTETYGPA-T 337

Query: 187 MCLGFAKQP--------------------FPTKSGSCGTVVRNAELKVIDPETGASLPHN 226
           +C   A QP                    +P + G          + V+DP+T   +P +
Sbjct: 338 VC---AWQPEWDALPLDERAQLKARQGVRYPLQEG----------VTVLDPDTMQPVPAD 384

Query: 227 QP--GEICIRGPQIMK 240
               GEI  RG  +MK
Sbjct: 385 GETIGEIMFRGNIVMK 400

Length = 545

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 68/229 (29%), Positives = 94/229 (41%), Gaps = 35/229 (15%)

Query: 23  PDDPVA-LPFSSGTTGLPKGVVLTHKSLITSVAQQVD--GENPNLYLTNGDVVLCVLPLF 79
           P D VA    S G+TG PK +  TH     SV + V+  G  P          LC LP  
Sbjct: 180 PADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRY------LCALPAA 233

Query: 80  HIYSLNSV-LLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVA 138
           H Y ++S   L    AG  V+L           LI++H+V+V A+VPP V    +     
Sbjct: 234 HNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEG 293

Query: 139 DY--DLSSIRVVLSGAAPLGKELEDALRSRVPQAI---LGQGYGMTEAGPVLSMCLG--- 190
                L+S++++  G A L     + L  R+P  +   L Q +GM E G V    L    
Sbjct: 294 GSRAQLASLKLLQVGGARLS----ETLARRIPAELGCQLQQVFGMAE-GLVNYTRLDDSD 348

Query: 191 ---FAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP 236
              F  Q  P           + E+ V D   G  LP  + G +  RGP
Sbjct: 349 ERIFTTQGRPMSP--------DDEVWVAD-ADGNPLPQGEVGRLMTRGP 388

Length = 536

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 68.9 bits (168), Expect = 2e-13
 Identities = 79/289 (27%), Positives = 120/289 (41%), Gaps = 77/289 (26%)

Query: 5   FTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDG-ENPN 63
           F  L E  +  +P    +  D   + ++SGTTG PKGV+++++S++T +A  +   ++ N
Sbjct: 206 FLKLGEGKQYDLP--IKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSAN 263

Query: 64  LYLTNGDVVLCVLPLFHIY------------------------------SLNSVLLCSL- 92
             LT  DV L  LPL HI+                               L   + C++ 
Sbjct: 264 AALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVP 323

Query: 93  ----RAGAGVLLMQKFEIGALLELI----------------QRHRVSVAAVVPPLVLALA 132
               R  +G  L +K   G  L+                  Q H V  + +   LV    
Sbjct: 324 RVLDRVYSG--LQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSH-VEASPLCDKLVFNKV 380

Query: 133 KNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLG-F 191
           K  +  +     +R++LSGAAPL   +E  LR      +L QGYG+TE+      C G F
Sbjct: 381 KQGLGGN-----VRIILSGAAPLASHVESFLRVVACCHVL-QGYGLTES------CAGTF 428

Query: 192 AKQPFPTKSGSCGTV---VRNAELKVID-PETG-ASLPHNQPGEICIRG 235
                P +    GTV   V N ++++   PE    +L     GEICIRG
Sbjct: 429 VS--LPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRG 475

Length = 666

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 68.7 bits (169), Expect = 2e-13
 Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 34/239 (14%)

Query: 11  ADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGD 70
           A++   P  A++ DD   + ++SG+TG PKGV + H+  +  + +  +     + L   D
Sbjct: 114 AEDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRG-VVRLVRNTNY----IALDPDD 168

Query: 71  VVLCVLPL------FHIYS--LNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVS 119
             L + PL      F I+   LN         G  ++L+ K    +   L  LI    V+
Sbjct: 169 RFLQLSPLSFDASTFEIWGALLN---------GGRLVLIDKETLLDPDRLARLIAEQGVT 219

Query: 120 VAAVVPPLVLALAKNPMVADY--DLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG 177
           V  +   L      N +V +    L+ +R +L G   L       + +  P   L  GYG
Sbjct: 220 VLWLTAALF-----NQLVDEDPEALAGLRQLLVGGDVLSPAHVRRVLAACPGLRLINGYG 274

Query: 178 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP 236
            TE     S C    +      S   G  + N  + ++D E G  +P   PGE+ + G 
Sbjct: 275 PTENT-TFSTCHVITRLDEAADSIPIGRPIPNTTVYILD-EEGQPVPIGVPGELYVGGD 331

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 68.4 bits (167), Expect = 3e-13
 Identities = 62/243 (25%), Positives = 110/243 (45%), Gaps = 13/243 (5%)

Query: 4   HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPN 63
           H    +E          + PDD + + F+ GTTGLPK V  TH ++ +SV   + G    
Sbjct: 157 HLDAATEPTPATSTPEGLRPDDAMIM-FTGGTTGLPKMVPWTHANIASSVRAIITGYR-- 213

Query: 64  LYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLL--MQKFEIGALLELIQRHRVSVA 121
             L+  D  + V+PL+H + L + LL +L +G  VLL    +F      + I+    +  
Sbjct: 214 --LSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWY 271

Query: 122 AVVPPLVLALAKNPMV--ADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT 179
             VP +   L +      +    +++R + S +APL  E   AL++     ++   +GMT
Sbjct: 272 TAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVV-CAFGMT 330

Query: 180 EAGPVLSM--CLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQ 237
           EA   ++     G  +   P  S         A+++++  + G  LP    GE+ +RG  
Sbjct: 331 EATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVGSD-GLPLPAGAVGEVWLRGTT 389

Query: 238 IMK 240
           +++
Sbjct: 390 VVR 392

Length = 534

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 67.8 bits (166), Expect = 4e-13
 Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 22/224 (9%)

Query: 29  LPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPN-LYLTNGDVVLCVLPLFHIYSLNSV 87
           L ++SGTTG PKG + +H+S   +V        P+ + L+  D VL V+P+FH+ +    
Sbjct: 181 LCYTSGTTGNPKGALYSHRS---TVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLP 237

Query: 88  LLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSI-R 146
               L     VL     +  +L ELI+  RV+ +A VP + L L  +   A    S++ R
Sbjct: 238 YSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRR 297

Query: 147 VVLSGAA---PLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMC-LGFAKQPFPTKSG- 201
            V+ G+A    + +  ED     V  A     +GMTE  P+ ++C L +     P     
Sbjct: 298 TVIGGSACPPAMIRTFEDEYGVEVIHA-----WGMTEMSPLGTLCKLKWKHSQLPLDEQR 352

Query: 202 ----SCGTVVRNAELKVIDPETGASLPHNQP--GEICIRGPQIM 239
                 G V+   ++K++  + G  LP +    G++ +RGP ++
Sbjct: 353 KLLEKQGRVIYGVDMKIVGDD-GRELPWDGKAFGDLQVRGPWVI 395

Length = 539

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 66.9 bits (164), Expect = 8e-13
 Identities = 64/237 (27%), Positives = 97/237 (40%), Gaps = 48/237 (20%)

Query: 23  PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVL------ 76
            DDP  + ++SGTTG PKG V TH       A+ +        L  GD +L +       
Sbjct: 99  KDDPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDI---GFCFDLKPGDRLLWITDMGWMM 155

Query: 77  -PLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGA--------LLELIQRHRVSVAAVVPPL 127
            P         ++L  L  GA ++L   +E GA        L  +++RH+V+   + P L
Sbjct: 156 GPW--------LVLGGLLLGATIVL---YE-GAPDYPDPDRLWRIVERHKVTHLGLSPTL 203

Query: 128 VLALAKNP--MVADYDLSSIRVVLSGAAPLGKE-----LEDALRSRVPQAILGQGY-GMT 179
           + AL  +    V  +DLSS+RV+ S   P   E      E     R P  I+   Y G T
Sbjct: 204 IRALRAHGDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFERVGGGRAP--II--NYSGGT 259

Query: 180 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP 236
           E    +   +       P K  S        +  V+D + G  +   + GE+ +R P
Sbjct: 260 EISGGILGNVPIR----PIKPCSFNGPSPGMDADVVDED-GRPVR-GEVGELVVRAP 310

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 64/244 (26%), Positives = 104/244 (42%), Gaps = 33/244 (13%)

Query: 11  ADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLY-LTNG 69
           A    +  V +E  DP+ + ++SGTTG PKGVV        ++   +     N+Y +  G
Sbjct: 207 AKARPVDCVPVESTDPLYILYTSGTTGKPKGVVRDTGGYAVALKWSMR----NIYGIKPG 262

Query: 70  DVVLCVLPLF----HIYSLNSVLLCSLRAGAGVLLMQKFE--------IGALLELIQRHR 117
           DV      +     H Y +   LL     GA  +L   +E         GA   +I+ + 
Sbjct: 263 DVFWAASDVGWVVGHSYIVYGPLLH----GATTVL---YEGKPVGTPDAGAYWRVIEEYG 315

Query: 118 VSVAAVVPPLVLALAKNP----MVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILG 173
           V+     P  + A+ K       +  YDLSS+R +      L     + +   +   ++ 
Sbjct: 316 VNALFTAPTAIRAIRKQDPDGEYIKKYDLSSLRALFLAGERLDSPTLEWIEKTLGVPVID 375

Query: 174 QGYGMTEAG-PVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEIC 232
             +  TE G P+ + C+G   +  P K GS G  V   +++V+D ETG  L   + G I 
Sbjct: 376 H-WWQTETGWPITANCVGL--ELLPIKPGSPGKPVPGYDVQVLD-ETGEELGPGELGNIV 431

Query: 233 IRGP 236
           I+ P
Sbjct: 432 IKLP 435

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 66.5 bits (162), Expect = 1e-12
 Identities = 59/222 (26%), Positives = 90/222 (40%), Gaps = 11/222 (4%)

Query: 17   PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVL 76
            P V + PD+   + ++SG+TG PKGV ++H SL+  +     GE     LT  D VL  +
Sbjct: 4687 PAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLH--ATGERYE--LTPDDRVLQFM 4742

Query: 77   PL-FHIYSLNSVLLCSLRAGAGVLLM--QKFEIGALLELIQRHRVSVAAVVPPLVLALAK 133
               F        L   L  GA V++     ++   L   I  HRV+V    P  +  LA+
Sbjct: 4743 SFSFDGSHEG--LYHPLINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAE 4800

Query: 134  NPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAK 193
            +    D +  S+RV   G   + +   D     +    L  GYG TE    + +      
Sbjct: 4801 HA-ERDGEPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDG 4859

Query: 194  QPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRG 235
                      GT + N    V+D +    LP    GE+ + G
Sbjct: 4860 DACGAAYMPIGTPLGNRSGYVLDGQ-LNPLPVGVAGELYLGG 4900

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 66.1 bits (161), Expect = 2e-12
 Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 14/177 (7%)

Query: 10  EADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSV--AQQVDGENPNLYLT 67
           E   ++ P   + P++   + ++SG+TG PKG    H++L   +   QQ  G      L 
Sbjct: 641 EGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYG------LG 694

Query: 68  NGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM---QKFEIGALLELIQRHRVSVAAVV 124
            GD VL   P     S+       L +GA +++       +   L+ELI R  V     V
Sbjct: 695 VGDTVLQKTPFSFDVSVWE-FFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFV 753

Query: 125 PPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181
           P ++ A  ++  VA    +S+R ++     L  + ++ + +++PQA L   YG TEA
Sbjct: 754 PSMLQAFLQDEDVA--SCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEA 808

Length = 5163

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 58/218 (26%), Positives = 83/218 (38%), Gaps = 19/218 (8%)

Query: 23  PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIY 82
            DD  A  ++SGTTGLPKGV +   +L    A         + L + DV   +      Y
Sbjct: 87  DDDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYA----IDLRDDDVFWNIADPGWAY 142

Query: 83  SLNSVLLCSLRAG-AGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPM-VADY 140
            L   +   L  G   V L   F      ++++R  V+  A  P     L       A  
Sbjct: 143 GLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADAAAR 202

Query: 141 DLSSIRVVLSGAAPLGKELEDALRSRVPQAILG----QGYGMTEAGPVLSMCLGFAKQPF 196
               +RV  S   PL  E+      R  QA LG      YG TE G  +      A    
Sbjct: 203 IKLKLRVASSAGEPLNPEV-----VRWFQANLGVTIHDHYGQTETGMPVGNHHALAH--- 254

Query: 197 PTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR 234
             ++GS G  +    + V+D + G  L   +PG++ I 
Sbjct: 255 EVRAGSMGLPLPGYRIAVLD-DDGQPLADGEPGQLAID 291

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 65.1 bits (159), Expect = 3e-12
 Identities = 59/226 (26%), Positives = 100/226 (44%), Gaps = 29/226 (12%)

Query: 22  EPDDPVALPFSSGTTGLPKGVVLTHKSLIT--SVAQQVDGENPNLYLTNGDVVLCVLPLF 79
           +P+DP  L F+SGTTG PKGV+  H++++   + A+ V      L L   DV  C     
Sbjct: 87  DPEDPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYV------LDLRPDDVYWCTADPG 140

Query: 80  HIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVAAVVPPLVLALAK--NPM 136
            +   +  ++  L  G  +++ + +F+      +++  +V+V    P  +  L +    +
Sbjct: 141 WVTGTSYGIIAPLLNGVTLVVDEGEFDAERWYGILEEEKVTVWYTAPTALRMLMRAGPEL 200

Query: 137 VADYDLSSIRVVLSGAAPLGKEL----EDALRSRVPQAILGQGYGMTEAGPVLSMCLGFA 192
            A YDLSS+R + S   PL  E+    E  L   +        +  TE G ++      A
Sbjct: 201 AARYDLSSLRHIASVGEPLNPEVVVWGEKVLGMPIHDT-----WWQTETGAIM-----IA 250

Query: 193 KQP-FPTKSGSCGTVVRNAELKVIDPETGASLPHNQP---GEICIR 234
             P  P K GS G  +   E  VI+ +     P   P   GE+ ++
Sbjct: 251 NYPGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALK 296

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 65.2 bits (159), Expect = 5e-12
 Identities = 66/230 (28%), Positives = 104/230 (45%), Gaps = 24/230 (10%)

Query: 14   DQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVL 73
             Q P + +  D+   + ++SG+TG PKGV  TH +L    A+++        L + DV++
Sbjct: 1263 SQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAAL----AERLQWMQATYALDDSDVLM 1318

Query: 74   CVLPL-FHIYSLNSVLLC--SLRAGAGVLLMQKFE---IGALLELIQRHRVSVAAVVPPL 127
               P+ F +    SV  C   L  G  ++L    E      + EL+Q++ V+    VPPL
Sbjct: 1319 QKAPISFDV----SVWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPL 1374

Query: 128  VLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLS- 186
            +      P+ A    +S+R + SG   L  EL + +  R+PQ  L   YG TE    ++ 
Sbjct: 1375 LQLFIDEPLAAA--CTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTH 1432

Query: 187  -MCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRG 235
              C     +  P      G  + N   +V+D E    LP    GE+CI G
Sbjct: 1433 WQCQAEDGERSPI-----GRPLGNVLCRVLDAEL-NLLPPGVAGELCIGG 1476

Length = 4334

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 64.1 bits (157), Expect = 8e-12
 Identities = 63/257 (24%), Positives = 98/257 (38%), Gaps = 53/257 (20%)

Query: 1   NCLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLIT--SVAQQVD 58
             L F  L E   D+      + +D   L ++SG+TG PKGV+  H +++      + V 
Sbjct: 182 GTLDFNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYV- 240

Query: 59  GENPNLYLTNGDVVLC--------------VLPLFHIYSLNSVLLCSLRAGAGVLLMQKF 104
                L L   DV  C                P      LN                 +F
Sbjct: 241 -----LDLHEDDVYWCTADPGWVTGTSYGIFAPW-----LNGATNVIDGG--------RF 282

Query: 105 EIGALLELIQRHRVSVAAVVPPLVLAL--AKNPMVADYDLSSIRVVLSGAAPLGKELEDA 162
                  +++ ++V+V    P  +  L  A + +V  YDLSS+R +LS   PL  E+   
Sbjct: 283 SPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEV--- 339

Query: 163 LRSRVPQAILGQ----GYGMTEAGPVLSMCLGFAKQP-FPTKSGSCGTVVRNAELKVIDP 217
              R    + G      + MTE G ++      A  P    K GS G  +   E  ++D 
Sbjct: 340 --VRWGMKVFGLPIHDNWWMTETGGIM-----IANYPAMDIKPGSMGKPLPGIEAAIVDD 392

Query: 218 ETGASLPHNQPGEICIR 234
           + G  LP N+ G + I+
Sbjct: 393 Q-GNELPPNRMGNLAIK 408

Length = 570

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 63.8 bits (156), Expect = 9e-12
 Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 37/243 (15%)

Query: 13  EDQIPEVAIEPDDPVALPFSSGTTGLPKGV--------VLTHKSLITSVAQQVDGENPNL 64
             ++P   +E ++P  + ++SGTTG PKGV        V    +L TS+     G+    
Sbjct: 222 GARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAV----ALATSMDTIFGGKAGET 277

Query: 65  YLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEI----GALLELIQRHRVSV 120
           +    D+   V    H Y + + LL    AG   ++ +        G    ++++++V+ 
Sbjct: 278 FFCASDIGWVV---GHSYIVYAPLL----AGMATIMYEGLPTRPDAGIWWRIVEKYKVNR 330

Query: 121 AAVVPPLVLALAKNP--MVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ---- 174
               P  +  L K    ++  +DLSS+R +     PL     D   +      LG     
Sbjct: 331 MFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPL-----DEPTASWISEALGVPVID 385

Query: 175 GYGMTEAG-PVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICI 233
            Y  TE G P+L++  G   +P  T+ GS G  +    +K+++  TG     N+ G + I
Sbjct: 386 NYWQTETGWPILAIARGVEDRP--TRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVI 443

Query: 234 RGP 236
            GP
Sbjct: 444 EGP 446

Length = 629

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 64.0 bits (156), Expect = 1e-11
 Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 18/225 (8%)

Query: 17  PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVL 76
           PEVA++PD+   + ++SG+TG PKGV ++H +L    A  V      L L   D +L   
Sbjct: 649 PEVALDPDNLAYVIYTSGSTGQPKGVAISHGAL----ANYVCVIAERLQLAADDSML--- 701

Query: 77  PLFHIYSLN---SVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSVAAVVPPLVLA 130
            +   ++ +   + L  +L +GA + L+      +  A   L+    V+V  +VP  + A
Sbjct: 702 -MVSTFAFDLGVTELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQA 760

Query: 131 LAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLG 190
           L +   VA        +V  G A L  +L   +R+  P A L   YG TE   V      
Sbjct: 761 LLQASRVAL-PRPQRALVCGGEA-LQVDLLARVRALGPGARLINHYGPTET-TVGVSTYE 817

Query: 191 FAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRG 235
            + +     +   G  + N  L ++D      +P    GE+ I G
Sbjct: 818 LSDEERDFGNVPIGQPLANLGLYILDHYL-NPVPVGVVGELYIGG 861

Length = 3956

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 63.3 bits (154), Expect = 1e-11
 Identities = 70/268 (26%), Positives = 110/268 (41%), Gaps = 71/268 (26%)

Query: 24  DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDG--ENPNLYLTNGDVVLCVLPLFHI 81
            D   + ++SGTTG PKGV+LT++++I  V    D   +  +   T  D     LPL H+
Sbjct: 220 TDICTIMYTSGTTGEPKGVILTNRAIIAEVL-STDHLLKVTDRVATEEDSYFSYLPLAHV 278

Query: 82  YSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPL--------VLALAK 133
           Y       C +  GA +   Q  +I  L+E +Q  + ++   VP +        +  ++ 
Sbjct: 279 YDQVIETYC-ISKGASIGFWQG-DIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISS 336

Query: 134 NPMVA--------DYDLSSIR-----------------------------VVLSGAAPLG 156
             M+         +Y L ++R                             ++LSGAAPL 
Sbjct: 337 GGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLP 396

Query: 157 KELEDALRSRVPQAILGQGYGMTEA--------GPVLSMCLGFAKQPFPTKSGSCGTVVR 208
           + +E+ LR     ++L QGYG+TE+          V SM +G    P  T      +V  
Sbjct: 397 RHVEEFLRV-TSCSVLSQGYGLTESCGGCFTSIANVFSM-VGTVGVPMTTIEARLESV-- 452

Query: 209 NAELKVIDPETGASLPHNQP-GEICIRG 235
                   PE G     + P GEIC+RG
Sbjct: 453 --------PEMGYDALSDVPRGEICLRG 472

Length = 660

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 62/220 (28%), Positives = 100/220 (45%), Gaps = 28/220 (12%)

Query: 24  DDPVALPFSSGTTGLPKGVVLTHK----SLITSVAQQVDGENPNLYLTNGDVVLCVLPLF 79
           DD + + F+SGTTG+PK V   H      ++T+   Q + +   L+LT  D         
Sbjct: 185 DDILLVYFTSGTTGMPKMVEHDHTYPLGHIVTAKYWQ-NVKEGGLHLTVADTGWGKAVWG 243

Query: 80  HIYSLNSVLLCSLRAGAGVLL--MQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV 137
            +Y           AGA V +    KF+   LLE I+++ V+     P +   L K  + 
Sbjct: 244 KLYG-------QWIAGAAVFVYDYDKFDPKNLLEKIEKYGVTTFCAPPTIYRFLIKEDL- 295

Query: 138 ADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFP 197
           + YDLSS+R   +   PL  E+ +  + +    ++ +G+G TE     ++ +      FP
Sbjct: 296 SKYDLSSLRYCTTAGEPLNPEVFNTFKEKTGIKLM-EGFGQTE----TTLTIA----TFP 346

Query: 198 ---TKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR 234
               K GS G      ++ +IDP+ G S    + GEI IR
Sbjct: 347 WMEPKPGSMGKPSPGYDIDIIDPD-GKSCEVGEEGEIVIR 385

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 62.1 bits (151), Expect = 3e-11
 Identities = 62/235 (26%), Positives = 96/235 (40%), Gaps = 30/235 (12%)

Query: 19  VAIEPDDPVALPFSSGTTGLPKGVVLT-HKSLITSVAQQVDGENPNLYLTNGDVVLCVLP 77
           V ++PDDP AL ++SGTTGLPKG  ++  ++L+TS     D     L L   D     +P
Sbjct: 82  VIVDPDDPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHD-----LNLQFPDRTYTCMP 136

Query: 78  LFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV 137
           L+H  +    L   L +G  + L +KF      + ++    ++   V  L   L   P  
Sbjct: 137 LYHGTAAFLGLCYCLGSGGTLCLSRKFSASQFWKDVRDSEATIIQYVGELCRYLLATPPS 196

Query: 138 ADYDLSSIRVVL-SGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPF 196
                  +RV   +G  P   ++ +  R R     +G+ Y  TE    +         PF
Sbjct: 197 PYDRDHKVRVAYGNGLRP---DIWERFRERFNVPEIGEFYAATEG---VFAFTNHNVGPF 250

Query: 197 PTKS-GSCGTVVR----NAELKV-IDPETGASL-----------PHNQPGEICIR 234
              + G  G + R    N    V +DPET   +           P  +PGE+  R
Sbjct: 251 TAGAIGFSGLIRRWFLENQVFLVKMDPETDMPIRDPKTGFCVRAPVGEPGEMLGR 305

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 62.1 bits (151), Expect = 4e-11
 Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 17/179 (9%)

Query: 10   EADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNG 69
            E   D  P V + P +   + ++SG+TG PKG    H +L+     ++        L+  
Sbjct: 1704 EGYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALV----NRLCATQEAYQLSAA 1759

Query: 70   DVVLCVLPLFHIYSLN-SV--LLCSLRAGAGVLLMQKFEI----GALLELIQRHRVSVAA 122
            DVVL     F  ++ + SV  L   L  GA  L++           L++LI+R +V+   
Sbjct: 1760 DVVL----QFTSFAFDVSVWELFWPLINGAR-LVIAPPGAHRDPEQLIQLIERQQVTTLH 1814

Query: 123  VVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181
             VP ++  L +     ++ LS  RVV  G A L  E       R+P   L   YG TE 
Sbjct: 1815 FVPSMLQQLLQMDEQVEHPLSLRRVVCGGEA-LEVEALRPWLERLPDTGLFNLYGPTET 1872

Length = 3956

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 61.8 bits (151), Expect = 5e-11
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 8   LSEADEDQIPEV--AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLY 65
            +       P     +   D     ++SGTTGLPK  V++H   + ++          L 
Sbjct: 181 AAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGL----LR 236

Query: 66  LTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSV 120
           LT  DV+ C LPL+H           L AGA + L +KF      + ++R+R + 
Sbjct: 237 LTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATA 291

Length = 600

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 61.3 bits (149), Expect = 7e-11
 Identities = 52/232 (22%), Positives = 94/232 (40%), Gaps = 27/232 (11%)

Query: 19  VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLP- 77
           V +E   P+ + ++SGTTG  K VV ++   +  +            +   D+   V   
Sbjct: 249 VPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYY------WRSIIEKDIPTVVFSH 302

Query: 78  ------LFHIYSLNSVLL-CSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLA 130
                  FH +   S+ L  +     G ++  K     L   I++H+V+    +P  +  
Sbjct: 303 SSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRY 362

Query: 131 LAKNPMVAD-----YDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVL 185
           L K    A      YDLS+++ +  G   + + + + + +++ +    +GYG TE G   
Sbjct: 363 LIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKL-KIKSSRGYGQTEIGITY 421

Query: 186 SMCLGFAKQPFPTKSGSCGTVVRNAELK-VIDPETGASLPHNQPGEICIRGP 236
             C G    P+        T V +  +K  I  E G  L  N+ GE+  + P
Sbjct: 422 LYCYGHINIPYNA------TGVPSIFIKPSILSEDGKELNVNEIGEVAFKLP 467

Length = 647

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 60.2 bits (146), Expect = 1e-10
 Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 36/234 (15%)

Query: 21  IEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFH 80
           ++     A+ +S+GTTG PKGVV +H+SL    +  +   + +L +T+G+  LC +P++H
Sbjct: 178 LDETTAAAICYSTGTTGAPKGVVYSHRSLYLQ-SLSLRTTD-SLAVTHGESFLCCVPIYH 235

Query: 81  IYSLNSVLLCSLRAGAGVLLMQKFEIGA--LLELIQRHRVSVAAVVPPLVLAL----AKN 134
           + S   V L +  +G   L+    ++ A  L ++I      VA  VP L + L     KN
Sbjct: 236 VLSW-GVPLAAFMSGTP-LVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKN 293

Query: 135 P---MVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGF 191
           P   M       S++ +  G + +   L  A   R    ++   +GMTE  PV     G 
Sbjct: 294 PPERM-------SLQEIYVGGSAVPPILIKAWEERYGVDVV-HVWGMTETSPV-----GT 340

Query: 192 AKQPFPTKSG--------SCGTVVRNAELKVI-DPETGASLPHNQPGEICIRGP 236
             +P    SG        S G    + E +++ D +   S   N+ GEI +RG 
Sbjct: 341 VARPPSGVSGEARWAYRVSQGRFPASLEYRIVNDGQVMESTDRNE-GEIQVRGN 393

Length = 576

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 13/212 (6%)

Query: 25  DPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSL 84
           +P+A+ F+SGTTG PK    +H SL   +  +V+G    L LT  D++  +     I + 
Sbjct: 175 EPMAIYFTSGTTGFPKMAEHSHSSL--GLGLKVNGRYW-LDLTPSDIMWNMSDTGWIKAA 231

Query: 85  NSVLLCSLRAGAGVL--LMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDL 142
              L      GA V    + +F+   +L+ + ++ ++     P +   L +  +   Y  
Sbjct: 232 IWSLFSPWIQGACVFVHHLPRFDPKVILQTLSKYPITTFCSAPTVYRMLVQQDL-TSYKF 290

Query: 143 SSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGS 202
            S+R  ++G  PL  E+ +  +++    +  +GYG TE G +   C  F       K GS
Sbjct: 291 KSLRHCVTGGEPLNPEVLEQWKAQTGLDLY-EGYGQTETGLI---CANFKGMKI--KPGS 344

Query: 203 CGTVVRNAELKVIDPETGASLPHNQPGEICIR 234
            G      ++++ID + G  LP    G+I IR
Sbjct: 345 MGKASPPYDVQIID-DNGNVLPPGTEGDIGIR 375

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 15/202 (7%)

Query: 24  DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS 83
           + P  + F+SG+TG PK  +   +S + S    V     + ++   D VL    L H   
Sbjct: 143 NAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVH----DFHMKREDSVLIAGTLVHSLF 198

Query: 84  LNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLS 143
           L    + +L  G  V LM+KF    +L+ ++   +SV   VP ++ +L K   V +   +
Sbjct: 199 LYGA-ISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENRVIE---N 254

Query: 144 SIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGS- 202
            ++++ SGA     E ++ +++  P A L + YG +E   V ++    +++  P   G  
Sbjct: 255 KMKIISSGAK-WEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERR-PNSVGRP 312

Query: 203 CGTV---VRNAELKVIDP-ETG 220
              V   + N   + +   E G
Sbjct: 313 FHNVQVRICNEAGEEVQKGEIG 334

Length = 487

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 59.5 bits (144), Expect = 3e-10
 Identities = 57/233 (24%), Positives = 96/233 (41%), Gaps = 21/233 (9%)

Query: 15  QIPEVAIEPDDPVALPFSSGTTGLPKGVVLT----HKSLITSVAQQVDGENPNLYLTNGD 70
           Q+P   +E ++P  + ++SGTTG PKGV         +L  S+          +  +  D
Sbjct: 223 QVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASD 282

Query: 71  VVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEI----GALLELIQRHRVSVAAVVPP 126
           V   V   + +Y+        L AGA  +L +        G    +++R+ V      P 
Sbjct: 283 VGWVVGHSYIVYA-------PLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPT 335

Query: 127 LVLALAKNP--MVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAG-P 183
            +  L K     +  +DLSS+  +     PL +     +   + + ++   Y  TE G P
Sbjct: 336 AIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVI-DNYWQTETGWP 394

Query: 184 VLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP 236
           VL++  G      P K GS G  +    L+V+D  TG     N+ G + +  P
Sbjct: 395 VLAIMPGLD--LKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPP 445

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 58.7 bits (143), Expect = 4e-10
 Identities = 64/234 (27%), Positives = 101/234 (43%), Gaps = 32/234 (13%)

Query: 13  EDQIPEVAI-EPDDPVALPFSSGTTGLPKGVVLTHKSLI---TSVAQQVDGENPNLYLTN 68
           ED  P + + +PDD   + ++SG+TG PKGV ++H++L+    S+A++         L  
Sbjct: 81  EDAEPALLLTDPDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSMARR-------PGLGA 133

Query: 69  GDVVLCVLPL-FHIYSLNSVL--LCSLRAGAGVLLMQKFEIG---ALLELIQRHRVSVAA 122
            D +L V  + F I    SVL  L  L +GA V++     +     L  LI   R+++  
Sbjct: 134 SDRLLAVTTISFDI----SVLELLLPLLSGATVVIASAETVRDPERLARLIADERITIMQ 189

Query: 123 VVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAG 182
             P     L          L+     L G   L ++L + L S    A L   YG TE  
Sbjct: 190 ATPATWRMLLAAGWRGRESLT----ALCGGEALPRDLAERLLSTG--AELWNMYGPTET- 242

Query: 183 PVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP 236
            + S C        P    + G  + N ++ V+D +    +P   PGE+ I G 
Sbjct: 243 TIWSTCARVTAADGP---VTIGRPIANTQVYVLDED-LQPVPPGVPGELYIGGD 292

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 58.8 bits (143), Expect = 4e-10
 Identities = 58/237 (24%), Positives = 95/237 (40%), Gaps = 34/237 (14%)

Query: 20  AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLC-VLPL 78
           A+ PD      F+SG+TGLPK V+ TH+ ++ +    +    P  +LT    VL   LP 
Sbjct: 160 AVGPDTVAKYLFTSGSTGLPKAVINTHR-MLCANQAMIAQCWP--FLTEEPPVLVDWLPW 216

Query: 79  FHIYSLNSVLLCSLRAG------AGVLLMQKFE--IGALLELIQRHRVSVAAVVPPLVLA 130
            H +  N      L  G       G  +   FE  +  L E+      +V      LV A
Sbjct: 217 NHTFGGNHNFNMVLYNGGTLYIDDGKPVPGLFEETLRNLREVSPTVYFNVPKGFEMLVDA 276

Query: 131 LAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ------GYGMTEAGPV 184
           L ++  +       +R++    A L +++ D L+  +     G+      G G TE  P 
Sbjct: 277 LERDAALRRRFFKRLRLLFYAGAALPQDVWDRLQ-ALAVRTTGERIPMTSGLGATETAPT 335

Query: 185 LSMCLGFAKQPFPT-KSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
            +         +PT +SG  G      ELK++        P+    E+ ++GP +  
Sbjct: 336 ATFV------HWPTDRSGVIGLPAPGTELKLV--------PNGGKLEVRVKGPNVTP 378

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 58.4 bits (142), Expect = 5e-10
 Identities = 66/254 (25%), Positives = 102/254 (40%), Gaps = 79/254 (31%)

Query: 21  IEPDDPVALP-------FSSGTTGLPKGVVLTHKSLIT---SVAQQVDGENPNLYLTNGD 70
               +PV LP       ++SG+TG PKGV L+  +L T   S+A+ +    P  +     
Sbjct: 102 RPSANPVELPAGTAKITYTSGSTGQPKGVCLSAAALETVAQSLAEAIAILEPERH----- 156

Query: 71  VVLCVLPLFHIYSLNSVLL-------CSLRAGAGVLLMQKFEIG----------ALLELI 113
             LC+LPL       + LL         L  GA V+L+   E+G            +  +
Sbjct: 157 --LCLLPL-------ATLLENIAGVYAPLLMGATVILVPLAELGLSGSSGLDPAQFVAAL 207

Query: 114 QRHRVSVAAVVPPLVLAL----AKNPMVADYDLSSIRVVLSGAAPLGKELEDALRS-RVP 168
            R +     +VP L++AL     + P+  +    S+R V  G A +   L    R+  +P
Sbjct: 208 SRWQPHSLILVPQLLMALVAAVEQGPLPPE----SLRFVAVGGARVSPSLLQRARALGLP 263

Query: 169 QAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQ- 227
              + +GYG++E   V+S+       P   + GS G                  LPH Q 
Sbjct: 264 ---VYEGYGLSECASVVSL-----NTPGADRPGSVGKP----------------LPHVQV 299

Query: 228 ----PGEICIRGPQ 237
                GEI +RG  
Sbjct: 300 SIANDGEILVRGSL 313

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 58.1 bits (141), Expect = 8e-10
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 10/106 (9%)

Query: 17  PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVL 76
           P   ++  DP  L F+SGTTG PK V  +H  L  +     +       LT  DV    +
Sbjct: 143 PHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFG----LTRDDVCYVSM 198

Query: 77  PLFH---IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVS 119
           PLFH   + +  +    ++ +GA V L  KF     L+ ++R+  +
Sbjct: 199 PLFHSNAVMAGWAP---AVASGAAVALPAKFSASGFLDDVRRYGAT 241

Length = 540

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 57.0 bits (137), Expect = 2e-09
 Identities = 68/234 (29%), Positives = 101/234 (43%), Gaps = 34/234 (14%)

Query: 25  DPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSL 84
           DP++L ++SGTT  PKGVV++H+    S    + G           V L  LP+FH    
Sbjct: 187 DPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTC----PVYLWTLPMFHCNGW 242

Query: 85  NSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSS 144
                 + R G  V  M+      + + I+ H V+    VP +   L K   +     S 
Sbjct: 243 TFTWGTAARGGTSVC-MRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSG 301

Query: 145 IRVVLSGAAPLGKELEDALRSRVPQAILG----QGYGMTEA-GPVLSMCLGFAK------ 193
              VL+G +P       AL  +V +  LG      YG+TEA GPVL     F +      
Sbjct: 302 PVHVLTGGSPPPA----ALVKKVQR--LGFQVMHAYGLTEATGPVL-----FCEWQDEWN 350

Query: 194 -----QPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQP--GEICIRGPQIMK 240
                Q    K+    +++  A++ V + ET  S+P +    GEI I+G  IMK
Sbjct: 351 RLPENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIMK 404

Length = 579

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 56.9 bits (137), Expect = 2e-09
 Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 22/159 (13%)

Query: 17  PEVAIEPDDPVALPFSSGTTGLPKGVV--LTHKSL------ITSVAQQVDGENPNLYLTN 68
           P +  +P   V L +SSGTTG PKG+   L  + +      I ++A+          ++ 
Sbjct: 142 PRLTEQPCGAVML-YSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYD------ISE 194

Query: 69  GDVVLCVLPLFHIYSLNSVLLCSL--RAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPP 126
            D+     P++H   L     CS+    G  V+L ++F+  A L  ++R+R++V  +VP 
Sbjct: 195 SDIYYSSAPIYHAAPLR---WCSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPT 251

Query: 127 LVLALAK--NPMVADYDLSSIRVVLSGAAPLGKELEDAL 163
           + + L K    +   YD+SS+R V+  AAP   +++ A+
Sbjct: 252 MFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAM 290

Length = 501

>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism]

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 54/216 (25%), Positives = 80/216 (37%), Gaps = 36/216 (16%)

Query: 32  SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLC- 90
           SSGTTG P     T K +                   GD V       + Y L +  L  
Sbjct: 98  SSGTTGKPTVFGYTAKDIERWAELLARSLYSAGV-RKGDKVQ----NAYGYGLFTGGLGL 152

Query: 91  ---SLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAK--NPMVADYDLSSI 145
              + R GA V+ +        LEL++  + +V A  P  +L LA+       D D  S+
Sbjct: 153 HYGAERIGATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSL 212

Query: 146 RVVLSGAAPLGKELEDALRSRVPQ---AILGQGYGMTEA-GPVLSMCLGFAKQPFPTKSG 201
           +  + GA P  +E    +R  +           YG+TE  GP    C             
Sbjct: 213 KKGIFGAEPWSEE----MRKVIENRFGCKAFDIYGLTEGFGPGAGEC------------- 255

Query: 202 SCGTVVRNAE----LKVIDPETGASLPHNQPGEICI 233
           +    +   E     +++DPETG  LP  + GE+ I
Sbjct: 256 TERNGLHIWEDHFIFEIVDPETGEQLPDGERGELVI 291

Length = 438

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 68/258 (26%), Positives = 110/258 (42%), Gaps = 35/258 (13%)

Query: 11  ADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGD 70
           A+  Q P  A++PDD   L ++SG+T LPKGV ++H +L+ +  +Q+      + L   D
Sbjct: 155 AEAWQEP--ALQPDDIAFLQYTSGSTALPKGVQVSHGNLVAN--EQLIRHGFGIDLNPDD 210

Query: 71  VVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM--QKFEIGAL--LELIQRHRVSVAA---V 123
           V++  LPL+H   L   LL  + +G   +LM    F    L  LE I  +  +++     
Sbjct: 211 VIVSWLPLYHDMGLIGGLLQPIFSGVPCVLMSPAYFLERPLRWLEAISEYGGTISGGPDF 270

Query: 124 VPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRV------PQAILGQGYG 177
              L         +   DLS  RV  SG+ P+ ++  +    +       P +     YG
Sbjct: 271 AYRLCSERVSESALERLDLSRWRVAYSGSEPIRQDSLERFAEKFAACGFDPDSFFAS-YG 329

Query: 178 MTEAG------------PVLSM-CLGFAKQPFPTKSG----SCGTVVRNAELKVIDPETG 220
           + EA             P L +     A+      +G    SCG       + ++DP++ 
Sbjct: 330 LAEATLFVSGGRRGQGIPALELDAEALARNRAEPGTGSVLMSCGRSQPGHAVLIVDPQSL 389

Query: 221 ASLPHNQPGEICIRGPQI 238
             L  N+ GEI   GP I
Sbjct: 390 EVLGDNRVGEIWASGPSI 407

Length = 4334

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 55.3 bits (134), Expect = 6e-09
 Identities = 44/176 (25%), Positives = 67/176 (38%), Gaps = 42/176 (23%)

Query: 6   TVLSEADEDQIPEVAIEP---DDPVALPFSSGTTGLPK-------GVVLTH-KSLITSVA 54
           T+L     D+   +  E    D P+ + +SSGTTGLPK       G +L H K       
Sbjct: 215 TLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGLPKCIVHGAGGTLLQHLKEHGL--- 271

Query: 55  QQVDGENPNLYLTNGDVVLCVLPLFHIYSLNS-----VLLCSLRAGAGVLL-----MQKF 104
              D       L  GD           Y+         L+  L +GA ++L     +   
Sbjct: 272 -HCD-------LRPGDR-------LFYYTTTGWMMWNWLVSGLLSGATLVLYDGSPLYPD 316

Query: 105 EIGALLELIQRHRVSVAAVVPPLVLALAKNPMV--ADYDLSSIRVVLSGAAPLGKE 158
               L  L  +  +++       + AL K  +     +DLSS+R +LS  +PL  E
Sbjct: 317 PD-VLWRLAAKLGITIFGTSAKYLDALEKAGIEPGRTHDLSSLRTILSTGSPLPPE 371

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 55.2 bits (134), Expect = 7e-09
 Identities = 44/164 (26%), Positives = 65/164 (39%), Gaps = 46/164 (28%)

Query: 17  PEVAIEP---DDPVALPFSSGTTGLPK-------GVVLTH-KSLITSVAQQVDGENPNLY 65
            E+  EP   D P+ + +SSGTTGLPK       G++L H K L        D       
Sbjct: 253 AELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKEL----GLHCD------- 301

Query: 66  LTNGDVVLCVLPLFHIYSLNS-----VLLCSLRAGAGVLLMQKFE-------IGALLELI 113
           L  GD        F  Y+         L+  L  GA ++L   ++          L +L 
Sbjct: 302 LGPGDR-------FFWYTTCGWMMWNWLVSGLLVGATLVL---YDGSPFYPDPNVLWDLA 351

Query: 114 QRHRVSVAAVVPPLVLALAKNPMV--ADYDLSSIRVVLSGAAPL 155
               V+V       + A  K  +V    +DLS++R + S  +PL
Sbjct: 352 AEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPL 395

Length = 655

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 55.3 bits (134), Expect = 7e-09
 Identities = 61/246 (24%), Positives = 97/246 (39%), Gaps = 52/246 (21%)

Query: 20  AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQ------VDGENPNLYLTNGDVVL 73
           A+ PD      F+SG+TGLPK V+ TH+ L  +  Q          E P        V++
Sbjct: 205 AVGPDTIAKFLFTSGSTGLPKAVINTHRML-CANQQMLAQTFPFLAEEP-------PVLV 256

Query: 74  CVLPLFHIYSLNSVLLCSLRAG------AGVLLMQKFEIGALLELIQRHRVSVAAV---V 124
             LP  H +  N  L   L  G       G      F+     E ++  R     V   V
Sbjct: 257 DWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFD-----ETLRNLREISPTVYFNV 311

Query: 125 PP----LVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ------ 174
           P     LV AL ++  +     S ++++    A L +++ D L  RV +A  G+      
Sbjct: 312 PKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVWDRL-DRVAEATCGERIRMMT 370

Query: 175 GYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR 234
           G GMTE  P  +   G       +++G+ G      E+K++        P     E+ ++
Sbjct: 371 GLGMTETAPSATFTTGPL-----SRAGNIGLPAPGCEVKLV--------PVGGKLEVRVK 417

Query: 235 GPQIMK 240
           GP +  
Sbjct: 418 GPNVTP 423

Length = 614

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 55.0 bits (132), Expect = 1e-08
 Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 8/167 (4%)

Query: 17   PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVL 76
            P V +  ++   + ++SG+TGLPKGV ++H +L                L+  D  L  +
Sbjct: 2139 PAVQLAGENLAYVIYTSGSTGLPKGVAVSHGAL----VAHCQAAGERYELSPADCELQFM 2194

Query: 77   PLFHIYSLNSVLLCSLRAGAGVLLM--QKFEIGALLELIQRHRVSVAAVVPPLVLALAKN 134
              F     +      L  GA VL+   + ++   L + ++RH V++    P  +  LA++
Sbjct: 2195 S-FSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEH 2253

Query: 135  PMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181
                    +       G A     L  A  +  P  +   GYG TEA
Sbjct: 2254 AERDGRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLF-NGYGPTEA 2299

Length = 5163

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 65/270 (24%), Positives = 97/270 (35%), Gaps = 64/270 (23%)

Query: 18  EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLP 77
                 D    L ++SG+T +P GV +TH +L T+V Q +D     L    GD  +  LP
Sbjct: 174 PPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDA----LEGQEGDRGVSWLP 229

Query: 78  LFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQR-------------HRVSVAAVV 124
            FH   L +VLL +       LL       +    ++R                   +  
Sbjct: 230 FFHDMGLITVLLPA-------LLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAA 282

Query: 125 PPLVLALAKNPMV-----ADYDLSSIRVVLSGAAPLG----KELEDA-----LRSRVPQA 170
           P      A    +        DLS+++ +L+G+ P+     ++  +A     L    P A
Sbjct: 283 PNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLP---PTA 339

Query: 171 ILGQGYGMTEAGPVLS----------------------MCLGFAKQPFPTKSGSCGTVVR 208
           I    YGM EA   +S                           A  P      S G V  
Sbjct: 340 I-KPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGV 398

Query: 209 NAELKVIDPETGASLPHNQPGEICIRGPQI 238
           +    ++DPET + LP  Q GEI + G  I
Sbjct: 399 SEWAVIVDPETASELPDGQIGEIWLHGNNI 428

Length = 631

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 65/291 (22%), Positives = 107/291 (36%), Gaps = 83/291 (28%)

Query: 9   SEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTH-------KSLITSVAQQVDGEN 61
            +   D I E   +P+    L ++SGTTG+PKGV+L+H       K+ +  +  +  G+ 
Sbjct: 136 PDEQLDAIIES-QKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKAAVKHMDLRTVGQ- 193

Query: 62  PNLYLTNGDVVLCVLPLFH----IYSL-------NSVLLCSLRAGAGVL--LMQKFEIGA 108
                   + V+  LPL H    I  +         V      A  G L   +++    A
Sbjct: 194 --------ESVVSYLPLSHIAAQILDIWLPISVGGCVYFAQPDALKGTLVKTLREVRPTA 245

Query: 109 LL------ELIQRHRVSVAAVVPPL---VLALAKN----------------PM---VADY 140
            +      E IQ    +V A    L   + + AK                 PM   +A  
Sbjct: 246 FMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMGGESPPPMCFRLAKK 305

Query: 141 ----------DLSSIRVVLSGAAPLGKELEDALRS-RVPQAILGQGYGMTEAGPVLSMCL 189
                      L   +   +GAAP+ +E  +   S  +P   + + YGM+E     ++  
Sbjct: 306 LVFKKVRKALGLDRCQKFFTGAAPISRETLEFFLSLNIP---IMELYGMSETSGPHTVSN 362

Query: 190 GFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
                P   +  SCG  +   E K+ +P+       +  GEICI G  +  
Sbjct: 363 -----PQNYRLLSCGKALPGCETKIHNPDA------DGIGEICIWGRHVFM 402

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 19/179 (10%)

Query: 10   EADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLI--TSVAQQVDGENPNLYLT 67
                +  P   +  ++   + ++SG+TG PKGV + H +L        +         L 
Sbjct: 3223 NGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYE------LD 3276

Query: 68   NGDVVLCVLPLFHIYSLNSV---LLCSLRAGAGVLLM--QKFEIGALLELIQRHRVSVAA 122
              D VL    LF  +S +      L +L  G  +++     ++   L + I  HR+S+A 
Sbjct: 3277 ANDRVL----LFMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIAC 3332

Query: 123  VVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181
              P  +   A++   AD   S    V  G A      E  ++ ++    L  GYG TEA
Sbjct: 3333 FPPAYLQQFAEDAGGADCA-SLDIYVFGGEAVPPAAFE-QVKRKLKPRGLTNGYGPTEA 3389

Length = 3956

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 10/117 (8%)

Query: 8   LSEADEDQIPE---VAIEPDDPVALPFSSGTTGLPKGVVLTH-KSLITSVAQQVDGENPN 63
           +  A ++ +P      +         ++SGTTGLPK   ++H + L  S    + G    
Sbjct: 123 VDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRVLQCSGMLSLCG---- 178

Query: 64  LYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSV 120
             +T  DVV   LPL+H       ++  +  GA ++L  KF      +  +++ V+V
Sbjct: 179 --VTADDVVYTTLPLYHSSGALLGIVGCIGLGATLVLKPKFSASQFWDDCRKYNVTV 233

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 60/254 (23%), Positives = 100/254 (39%), Gaps = 55/254 (21%)

Query: 13  EDQIPEVAIEP---DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLT-- 67
                    EP   +DP+ + ++SG+TG PKGV+ T             G      +T  
Sbjct: 222 AKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHT-----------TGGYLLYAAMTMK 270

Query: 68  ------NGDVVLCVLPLF----HIYSLNSVLLCSLRAGAGVLLMQKFE-------IGALL 110
                 +GD+  C   +     H Y    ++   L  GA  ++   FE        G   
Sbjct: 271 YVFDIKDGDIFWCTADVGWITGHSY----IVYGPLANGATTVM---FEGTPTYPDPGRFW 323

Query: 111 ELIQRHRVSVAAVVPPLVLALAK--NPMVADYDLSSIRVVLSGAAPLGKEL-----EDAL 163
           E+I++H+V++    P  + AL +  +  V  +DLSS+R++ S   P+  E      +   
Sbjct: 324 EIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVG 383

Query: 164 RSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASL 223
           + R P   +   +  TE G    + +       PTK GS        E  V+D E G  +
Sbjct: 384 KERCP---IVDTWWQTETG---GIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPV 436

Query: 224 PH-NQPGEICIRGP 236
               + G + I+ P
Sbjct: 437 EGPGEGGYLVIKQP 450

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 37/244 (15%)

Query: 13   EDQIPEVAIEPDDP---VALP-------FSSGTTGLPKGVVLTHKSLITSVAQQVD--GE 60
            ED    +A   D P   ++LP       ++SG+TG PKGVV++H  +       ++  G 
Sbjct: 2312 EDDAAALAAYSDAPLPFLSLPQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGM 2371

Query: 61   NPNLYLTNGDVVLCVLPLFHIYSLN-----SVLLCSLRAGAGVLLMQKFEIGA--LLELI 113
              +      D   C L   H YS+N       LL  L  GA V+L  + + GA  + +LI
Sbjct: 2372 RAD------D---CEL---HFYSINFDAASERLLVPLLCGARVVLRAQGQWGAEEICQLI 2419

Query: 114  QRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILG 173
            +  +VS+    P     LA+  +    +   +R+ ++G   L  E    +R      +  
Sbjct: 2420 REQQVSILGFTPSYGSQLAQW-LAGQGEQLPVRMCITGGEALTGEHLQRIRQAFAPQLFF 2478

Query: 174  QGYGMTEAGPVLSMCLGFAKQPFPTKSGSC--GTVVRNAELKVIDPETGASLPHNQPGEI 231
              YG TE   +   CL  A +     + S   G VV  A +  I     A +P    GE+
Sbjct: 2479 NAYGPTETVVMPLACL--APEQLEEGAASVPIGRVV-GARVAYILDADLALVPQGATGEL 2535

Query: 232  CIRG 235
             + G
Sbjct: 2536 YVGG 2539

Length = 4334

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 72/251 (28%), Positives = 107/251 (42%), Gaps = 47/251 (18%)

Query: 17  PEVAIEPD----DPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLY-LTNGDV 71
           PE A +P       +AL ++SGTT  PKGVVL H+      A  +   N  ++ +  G V
Sbjct: 184 PEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRG-----AYLMALSNALIWGMNEGAV 238

Query: 72  VLCVLPLFH----IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVS--VAAVVP 125
            L  LP+FH     ++     LC    G  + L Q     A+   I  + V+   AA   
Sbjct: 239 YLWTLPMFHCNGWCFTWTLAALC----GTNICLRQ-VTAKAIYSAIANYGVTHFCAA--- 290

Query: 126 PLVLALAKNPMVADYDLSSIRVV---LSGAAP----LGKELEDALRSRVPQAILGQGYGM 178
           P+VL    N   ++  L   RVV    +GAAP    L    E   R       +   YG+
Sbjct: 291 PVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFAMSEKGFR-------VTHTYGL 343

Query: 179 TEA-GP--VLSMCLGFAKQPFPTKSG-SCGTVVRNAELK---VIDPETGASLPHNQP--G 229
           +E  GP  V +    +   P   ++  +    VR   L+   V+D +T   +P +    G
Sbjct: 344 SETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMG 403

Query: 230 EICIRGPQIMK 240
           EI +RG  +MK
Sbjct: 404 EIVMRGNMVMK 414

Length = 567

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 13/96 (13%)

Query: 145 IRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKS---G 201
           +R+++SG APL  E+E+ LR     A + QGYG+TE        LG     FP +    G
Sbjct: 385 LRLLISGGAPLSTEIEEFLRV-TSCAFVVQGYGLTET-------LGPTTLGFPDEMCMLG 436

Query: 202 SCGTVVRNAELKVID-PETGAS-LPHNQPGEICIRG 235
           + G      EL++ + PE G   L     GEIC+RG
Sbjct: 437 TVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRG 472

Length = 660

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 50.1 bits (119), Expect = 3e-07
 Identities = 60/243 (24%), Positives = 102/243 (41%), Gaps = 19/243 (7%)

Query: 8   LSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHK-SLITSVAQQVDGENPNLYL 66
             EA  ++   V +       + +++GTTGLPKGVV +H+  ++ S+A  +        L
Sbjct: 137 YEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDG---TAL 193

Query: 67  TNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPP 126
           +  DVVL V+P+FH+ +       +L     VL   + +  +L+EL     V+  A VP 
Sbjct: 194 SEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPT 253

Query: 127 LV--LALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPV 184
           +   LA               R+V+ G+A        A   R+   +  QGYG+TE  PV
Sbjct: 254 VWLALADYLESTGHRLKT-LRRLVVGGSAA--PRSLIARFERMGVEVR-QGYGLTETSPV 309

Query: 185 LSMCLGFAKQPFPTKSGSCGTVVRNA------ELKVIDPETGASLPHNQPG--EICIRGP 236
           +      +     ++        +         L+V D E    +P +     E+ ++GP
Sbjct: 310 VVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEG-RPVPKDGKALGEVQLKGP 368

Query: 237 QIM 239
            I 
Sbjct: 369 WIT 371

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 50.0 bits (119), Expect = 4e-07
 Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 18/182 (9%)

Query: 24  DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPN-LYLTNGDVVLCVLPLFHIY 82
           +DP+A+ F+SGTTG PK V+L +++   +V   +  E  N +    G+     LP  HI 
Sbjct: 169 EDPLAMIFTSGTTGEPKAVLLANRTFF-AVPDILQKEGLNWVTWVVGETTYSPLPATHIG 227

Query: 83  SLNSVLLCSLRAGAGVLLMQKFEIGA-LLELIQRHRVSVAAVVPPLVLALAKNPMVADYD 141
            L  +L C +  G   L +   E    LLE++  + V+   +VP L+  L      A+  
Sbjct: 228 GLWWILTCLMHGG---LCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANAT 284

Query: 142 LSSIR-VVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKS 200
           + S+R V   G+  +  ++     + V  A   Q YG++E G   ++CL       PT  
Sbjct: 285 VPSLRLVGYGGSRAIAADVRFIEATGVRTA---QVYGLSETG-CTALCL-------PTDD 333

Query: 201 GS 202
           GS
Sbjct: 334 GS 335

Length = 540

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 68/248 (27%), Positives = 104/248 (41%), Gaps = 41/248 (16%)

Query: 6   TVLSEAD-----EDQIPEVAI----EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQ 56
           T+L+ AD         P+  +      DDP+ L F+SGTTGLPK V+ TH S        
Sbjct: 57  TLLTPADLRDRFSRGKPKAIVADETRADDPILLYFTSGTTGLPKLVLHTHVSYPV----- 111

Query: 57  VDGENPNLY---LTNGDVVLCV-LPLFHIYSLNSVLLCSLRAGAGVLLMQ--KFEIGALL 110
             G    +Y   L  GD+ L +  P +  ++ +S       AGA V  +   +F+    L
Sbjct: 112 --GHLSTMYWIGLQPGDIHLNISSPGWAKHAWSS-FFAPWNAGATVFGINYPRFDARRYL 168

Query: 111 ELIQRHRV-SVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQ 169
             +++  V +  A  PP V  +     +A YD+  +R  +S   PL  E+ +    RV +
Sbjct: 169 GALEKFGVTTFCA--PPTVWRMFIQQDLAQYDV-RLREAVSAGEPLNPEVIE----RVKK 221

Query: 170 AI---LGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHN 226
           A    +  GYG TE     +M      Q    K GS G  +    + ++D E        
Sbjct: 222 AWGLTIRDGYGQTET---TAMIGNSPGQKV--KPGSMGRPLPGYRVVLLDDEGKE--IPV 274

Query: 227 QPGEICIR 234
             GEI + 
Sbjct: 275 TEGEIALD 282

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 76/277 (27%), Positives = 112/277 (40%), Gaps = 74/277 (26%)

Query: 23  PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIY 82
           P+D   + ++SG+TGLPKGV++TH +++ +VA  V    P   L   DV L  LPL HI 
Sbjct: 249 PNDIAVIMYTSGSTGLPKGVMMTHGNIVATVA-GVMTVVPK--LGKNDVYLAYLPLAHIL 305

Query: 83  SL--NSVLL---CSLRAGAGVLL------MQKFEIGALLELIQRHRVSVAAVVPPL---- 127
            L   SV+     ++  G+ + L      ++K   G    L    + ++   VP +    
Sbjct: 306 ELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASAL----KPTLMTAVPAILDRV 361

Query: 128 ---VL-------ALAKNPMVADYD--LSSIRVVLSGAAPLGKELEDALRSRVPQAILG-- 173
              V         LAK      Y   L++I     GA  L K L DAL  +  +A+LG  
Sbjct: 362 RDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGR 421

Query: 174 ----------------------------QGYGMTEAGPVLSMCLGFAKQPFPTKS-GSCG 204
                                       QGYG+TE       C G     +   S G  G
Sbjct: 422 IRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTET------CAGATFSEWDDTSVGRVG 475

Query: 205 TVVRNAELKVIDPETGASLPHNQP---GEICIRGPQI 238
             +    +K++  E G  L  ++P   GEI I GP +
Sbjct: 476 PPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSV 512

Length = 696

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 55/231 (23%), Positives = 89/231 (38%), Gaps = 25/231 (10%)

Query: 11  ADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKS---LITSVAQQVDGENPNLYLT 67
            ++     V  +PDD   + ++SG+TG PKGV + H++   L+   A     E     L 
Sbjct: 92  LEDAGARLVLTDPDDLAYVIYTSGSTGRPKGVAIEHRNAAALLQWAAAVFSAEELAGVLA 151

Query: 68  NGDVV--LCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVP 125
              +   L V  +F            L  G  V+L       AL +L  +  V++   VP
Sbjct: 152 ATSICFDLSVFEIF----------VPLSTGGRVVLAD--NALALPDLPAKAEVTLINTVP 199

Query: 126 PLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVL 185
                L +     D   SS+R V     PL +EL   L +      +   YG +E     
Sbjct: 200 SAARELLR----HDALPSSVRTVNLAGEPLPQELVQRLYALPQVERVYNLYGPSED---T 252

Query: 186 SMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP 236
           +       +P  +++ S G  +   +  V+D      +P   PGE+ I G 
Sbjct: 253 TYSTYAEVEPGASRTPSIGRPLAGTQAYVLD-AHLQPVPVGVPGELYIGGA 302

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 59/252 (23%), Positives = 97/252 (38%), Gaps = 46/252 (18%)

Query: 10  EADEDQIPEVAIEP---DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLY- 65
           +      P    EP   +DP+ + ++SG+TG PKGVV T    +   A          Y 
Sbjct: 208 DLMAKASPYCEPEPMDAEDPLFILYTSGSTGKPKGVVHTTGGYLVYAATTFK------YV 261

Query: 66  --LTNGDVVLCVLPL----FHIYSLNSVLLCSLRAGAGVLLMQKFEIGA--------LLE 111
             +   DV  C   +     H Y +   L      GA  ++   +E GA          E
Sbjct: 262 FDIHPDDVYWCTADIGWITGHSYIVYGPLAN----GATTVM---YE-GAPDYPDPGRWWE 313

Query: 112 LIQRHRVSVAAVVPPLVLALAKNP--MVADYDLSSIRVVLSGAAPLGKEL-----EDALR 164
           ++++++V++    P  +  L +        +DLSS+R++ S   P+  E      E   +
Sbjct: 314 IVEKYKVTIFYTAPTAIRMLMRFGDEWPKKHDLSSLRLLGSVGEPINPEAWMWYYEVIGK 373

Query: 165 SRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLP 224
            R P   +   +  TE G  +   L  A    P K GS        E  ++D E G  + 
Sbjct: 374 ERCP---IVDTWWQTETGGHMITPLPGA---TPLKPGSATRPFPGVEPAIVDEE-GNEVE 426

Query: 225 HNQPGEICIRGP 236
               G + I+ P
Sbjct: 427 GGVEGYLVIKRP 438

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 48.8 bits (117), Expect = 8e-07
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 14/100 (14%)

Query: 145 IRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCG 204
           +R +LSG  PL    ++ +   V   ++ QG+G+TE     ++C G  ++    +  + G
Sbjct: 430 VRAMLSGGGPLSAATQEFVN--VVFGMVIQGWGLTE-----TVCCGGIQRTGDLEPNAVG 482

Query: 205 TVVRNAELKVIDPE----TGASLPHNQPGEICIRGPQIMK 240
            +++  E+K++D E    T    P    GEI +RGP + K
Sbjct: 483 QLLKGVEMKLLDTEEYKHTDTPEPR---GEILLRGPFLFK 519

Length = 700

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 73/278 (26%), Positives = 115/278 (41%), Gaps = 66/278 (23%)

Query: 14  DQIPE--------VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQ---QVDGENP 62
           D IP+        V ++ DD   L ++SG+T  P GV +TH+++ T++ Q    +D  + 
Sbjct: 175 DAIPDSAGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDR 234

Query: 63  NLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFE--------IGALLELIQ 114
           N   T+G   +  LPL+H   L+ +   ++  G    LM            I AL E  +
Sbjct: 235 N---THG---VSWLPLYHDMGLSMIGFPAV-YGGHSTLMSPTAFVRRPQRWIKALSEGSR 287

Query: 115 RHRVSVAAVVPPLVLALAKN----PMVADYDLSSIRVVLSGAAPLGKELEDALRS----- 165
             RV  AA  P      A          D DLS++ V++ G+ P+     DA+ +     
Sbjct: 288 TGRVVTAA--PNFAYEWAAQRGLPAEGDDIDLSNV-VLIIGSEPVSI---DAVTTFNKAF 341

Query: 166 ---RVPQAILGQGYGMTEAGPVLS-----------------MCLGFA-----KQPFPTKS 200
               +P+      YG+ EA   ++                 +  G A       P     
Sbjct: 342 APYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAH 401

Query: 201 GSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQI 238
            SCG V R+    ++DP+TGA LP  + GEI + G  I
Sbjct: 402 VSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNI 439

Length = 612

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 46.0 bits (110), Expect = 6e-06
 Identities = 65/233 (27%), Positives = 101/233 (43%), Gaps = 37/233 (15%)

Query: 4   HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPN 63
             T L     +    VA +P     +  +SG+TGLPK  V T ++ + S A+ V    P 
Sbjct: 115 ALTSLHLQLVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLAS-AEGVLSLMP- 172

Query: 64  LYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAV 123
              T  D  L  LPLFH+ S   ++   L AGA +++  K     L + +     + A++
Sbjct: 173 --FTAQDSWLLSLPLFHV-SGQGIVWRWLYAGATLVVRDK---QPLEQALA--GCTHASL 224

Query: 124 VPPLVLALAKNPMVADYDLSSIRVVLSGAA-PLGKELEDALRSRVPQAILGQGYGMTEAG 182
           VP  +  L  N       LS   V+L GAA P+  EL +    +  +     GYG+TE  
Sbjct: 225 VPTQLWRLLDNRSEP---LSLKAVLLGGAAIPV--ELTEQAEQQGIRCWC--GYGLTEMA 277

Query: 183 PVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRG 235
             +      AK+     +G  G+ +   E+K++D            GEI +RG
Sbjct: 278 STV-----CAKRA-DGLAG-VGSPLPGREVKLVD------------GEIWLRG 311

Length = 458

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 46/181 (25%), Positives = 70/181 (38%), Gaps = 20/181 (11%)

Query: 20  AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLF 79
           AI PD      F+SG+TG+PK V+ T + +  +     +   P        V L  +P  
Sbjct: 216 AITPDTVAKYLFTSGSTGMPKAVINTQRMM-CANIAMQEQLRPREPDPPPPVSLDWMPWN 274

Query: 80  HIYSLNSVLLCSLRAG------AGVLLMQKFE--IGALLELIQRHRVSVAAVVPPLVLAL 131
           H    N+     L  G       G  L   FE  I  L E+      +V A    L  A+
Sbjct: 275 HTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAM 334

Query: 132 AKNPMVADYDLSSIRVVLSGAAPLGKELEDALR--------SRVPQAILGQGYGMTEAGP 183
            K+  +      ++R++  G A L  +L + ++         R+P      GYG TE  P
Sbjct: 335 EKDDALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIP---FYTGYGATETAP 391

Query: 184 V 184
            
Sbjct: 392 T 392

Length = 624

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 63/256 (24%), Positives = 99/256 (38%), Gaps = 46/256 (17%)

Query: 8   LSEADEDQIP---EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNL 64
           L +A+    P   + A++ DD   + ++SG+TG PKGV ++H +L++      +    + 
Sbjct: 122 LEQAETSGGPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSF----TNWMLADF 177

Query: 65  YLTNGDVVLCVLPLFHIYSLN-SV--LLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVA 121
            L+ G   L   P    +S + SV  L   L +G  +  + K        L +    +  
Sbjct: 178 PLSEGKQFLNQAP----FSFDLSVMDLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGL 233

Query: 122 AV---VPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM 178
            V    P  V     +P     +   +   L     L  +   AL  R P+A +   YG 
Sbjct: 234 NVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGP 293

Query: 179 TEA-GPVLSMC-------------LGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLP 224
           TEA   V S+              +GFAK                  L ++D E G  LP
Sbjct: 294 TEATVAVTSVKITQEILDQYPRLPIGFAKPDMN--------------LFIMD-EEGEPLP 338

Query: 225 HNQPGEICIRGPQIMK 240
             + GEI I GP + K
Sbjct: 339 EGEKGEIVIVGPSVSK 354

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 54/230 (23%), Positives = 93/230 (40%), Gaps = 15/230 (6%)

Query: 7   VLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYL 66
           VL  A   Q PE        + L  +SGTTG PKG   +    I    + +    P    
Sbjct: 181 VLIAAHAGQRPEPTGRKGRVILL--TSGTTGTPKGARRSGPGGI-GTLKAILDRTP---W 234

Query: 67  TNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPP 126
              +  + V P+FH +  + ++L +  A   ++  ++F+  A L+LI RHR +  AVVP 
Sbjct: 235 RAEEPTVIVAPMFHAWGFSQLVLAASLACT-IVTRRRFDPEATLDLIDRHRATGLAVVPV 293

Query: 127 LVLALAKNP--MVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPV 184
           +   +   P  +   Y   S+R   +  + +  ++  A   +    I    Y  TEAG  
Sbjct: 294 MFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNN-YNATEAG-- 350

Query: 185 LSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR 234
             M              + G      E++++D +    +P  + G I +R
Sbjct: 351 --MIATATPADLRAAPDTAGRPAEGTEIRILDQD-FREVPTGEVGTIFVR 397

Length = 537

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 48/218 (22%), Positives = 80/218 (36%), Gaps = 42/218 (19%)

Query: 26  PVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLN 85
           P  L +SSGTTG PK +  +   +   +    +  N     T   +V C  P+ H Y L 
Sbjct: 103 PSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDET--PIVAC--PVTHSYGLI 158

Query: 86  SVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSI 145
             +L +L  G+  +++        L +++     +   VP ++  L +            
Sbjct: 159 CGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLLPG---TFQFH 215

Query: 146 RVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGT 205
            V+ SG  PL +     LR R     + Q YG +EAG     C+                
Sbjct: 216 AVMTSG-TPLPEAWFYKLRER--TTYMMQQYGCSEAG-----CVSICPD----------- 256

Query: 206 VVRNAELKVIDPETGASLPH---------NQPGEICIR 234
            +++        + G  LPH         N P EI ++
Sbjct: 257 -MKSHL------DLGNPLPHVSVSAGSDENAPEEIVVK 287

Length = 414

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 43.9 bits (103), Expect = 4e-05
 Identities = 62/221 (28%), Positives = 89/221 (40%), Gaps = 36/221 (16%)

Query: 31  FSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSL-NSVLL 89
           ++SGTTG PK  +  H   +T V          L LT  D  LC   ++  Y L NSV  
Sbjct: 152 YTSGTTGPPKAAIHRHADPLTFVDAMCRKA---LRLTPEDTGLCSARMYFAYGLGNSVWF 208

Query: 90  CSLRAGAGVL--LMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRV 147
                G+ V+       E  A+L    R   SV   VP    A   +    D    S+R 
Sbjct: 209 PLATGGSAVINSAPVTPEAAAILS--ARFGPSVLYGVPNF-FARVIDSCSPD-SFRSLRC 264

Query: 148 VLSGAAPLGKELEDALRSRVPQAILG----QGYGMTEAGPVLSMCLGFAKQPFPTKS--- 200
           V+S     G+ LE  L  R+ +   G     G G TE G           Q F +     
Sbjct: 265 VVSA----GEALELGLAERLMEFFGGIPILDGIGSTEVG-----------QTFVSNRVDE 309

Query: 201 ---GSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQI 238
              G+ G V+   E++V+ P+   + P  + G++ +RGP I
Sbjct: 310 WRLGTLGRVLPPYEIRVVAPDGTTAGPGVE-GDLWVRGPAI 349

Length = 705

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 52/187 (27%), Positives = 77/187 (41%), Gaps = 33/187 (17%)

Query: 11  ADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLY----- 65
           A +   P    +P     + F+SG+TG PKGV++   +++          N  L+     
Sbjct: 585 APQGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIV----------NRLLWMQNHY 634

Query: 66  -LTNGDVVLCVLPL-FHIYSLNSV--LLCSLRAGAGVLLMQKFEI----GALLELIQRHR 117
            LT  DVVL   P  F +    SV        AGA  L+M + E      A+ +    + 
Sbjct: 635 PLTADDVVLQKTPCSFDV----SVWEFFWPFIAGA-KLVMAEPEAHRDPLAMQQFFAEYG 689

Query: 118 VSVAAVVPPLVLAL--AKNPMVADYDLSSIRVVL-SGAAPLGKELEDALRSRVPQAILGQ 174
           V+    VP ++ A   +  P  A    +S+R V  SG A L  +L    +     A L  
Sbjct: 690 VTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEA-LPADLCREWQQLT-GAPLHN 747

Query: 175 GYGMTEA 181
            YG TEA
Sbjct: 748 LYGPTEA 754

Length = 1296

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 43.1 bits (101), Expect = 8e-05
 Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 13/175 (7%)

Query: 13  EDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVV 72
           E+     A+     + L  +SGTTG PKGV    + L ++V   V   +    L  G  +
Sbjct: 164 EESGGRPAVAAPGRIVL-LTSGTTGKPKGVPRAPQ-LRSAVGVWVTILD-RTRLRTGSRI 220

Query: 73  LCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALA 132
              +P+FH   L  +L+ ++  G  VL  + F+  A L     HR      VP ++  + 
Sbjct: 221 SVAMPMFHGLGL-GMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARIL 279

Query: 133 KNP--MVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQA---ILGQGYGMTEAG 182
           + P  + A   L  +RVV+S     G  L+  L  R       IL  GYG TE G
Sbjct: 280 ELPPRVRARNPLPQLRVVMSS----GDRLDPTLGQRFMDTYGDILYNGYGSTEVG 330

Length = 516

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 58/239 (24%), Positives = 93/239 (38%), Gaps = 47/239 (19%)

Query: 17   PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVV---- 72
            P +   PD+   + ++SG+TGLPKGV++  + ++ +   +V    P L L+  DV+    
Sbjct: 3862 PGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKV----PYLALSEADVIAQTA 3917

Query: 73   ----------LCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVS 119
                          PLF               GA V ++      +   LL  +Q   ++
Sbjct: 3918 SQSFDISVWQFLAAPLF---------------GARVEIVPNAIAHDPQGLLAHVQAQGIT 3962

Query: 120  VAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT 179
            V   VP L+  +      A   L  +R +L     +  EL      R PQ  L   YG  
Sbjct: 3963 VLESVPSLIQGMLAEDRQA---LDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPA 4019

Query: 180  EAGPVLSMCLGFAKQPFPTKSGS---CGTVVRNAELKVIDPETGASLPHNQPGEICIRG 235
            E     S  + F +    +  GS    G+   N  L ++D E    +P    GE+C+ G
Sbjct: 4020 EC----SDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLD-EALELVPLGAVGELCVAG 4073

Length = 4334

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 10/69 (14%)

Query: 22  EPDDPVAL-PFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLY-----LTNGDVVLCV 75
           E +D +AL  ++SGTTG PKGV+ TH SL   +          L          +     
Sbjct: 261 ENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGIL----ALEDRLNDLIGPPEEDETYCSY 316

Query: 76  LPLFHIYSL 84
           LPL HI   
Sbjct: 317 LPLAHIMEF 325

Length = 700

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 51/167 (30%), Positives = 71/167 (42%), Gaps = 24/167 (14%)

Query: 24  DDPVALPFS-SGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIY 82
           DD VAL  + SGTTG PKG +LT  +L  S       +  +  L      L  LP  HI 
Sbjct: 34  DDDVALVVATSGTTGTPKGAMLTAAALTAS------ADATHDRLGGPGQWLLALPAHHIA 87

Query: 83  SLNSVLLCSLRAGAGVL---LMQKFEIGALLELIQR---HRVSVAAVVPPLVLALAKNPM 136
            L  VL+ S+ AG+  +   +   F+  AL   +      R   + V  P+ LA A +  
Sbjct: 88  GL-QVLVRSVIAGSEPVELDVSAGFDPTALPRAVAELGGGRRYTSLV--PMQLAKALDDP 144

Query: 137 VADYDLSSIRVVLSGAAPLGKELEDA---LRSRVPQAILGQGYGMTE 180
            A   L+ +  VL G  P    + DA       V +      YGM+E
Sbjct: 145 AATAALAELDAVLVGGGPAPAPVLDAAAAAGINVVRT-----YGMSE 186

Length = 358

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 13/168 (7%)

Query: 17   PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVL 76
            P +   P++   + ++SG+TG PKGV + H +L   +            L  GD VL   
Sbjct: 3189 PAIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQ----AYGLGVGDRVLQFT 3244

Query: 77   PLFHIYSLNSVLLCSLRAGAGVLLM---QKFEIGALLELIQRHRVSVAAVVPPLVLALAK 133
              F        L   L +GA V+L       +   L+ELI    V V    P ++ A  +
Sbjct: 3245 T-FSFDVFVEELFWPLMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLE 3303

Query: 134  NPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181
                     +S++ ++ G   L  +L+  + + +P   L   YG TEA
Sbjct: 3304 EEDAHRC--TSLKRIVCGGEALPADLQQQVFAGLP---LYNLYGPTEA 3346

Length = 5163

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 15/42 (35%), Positives = 25/42 (59%)

Query: 10  EADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLIT 51
                   + A++ DD   + F+SGTTG PKGV ++H +L++
Sbjct: 129 ATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVS 170

Length = 503

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 5   FTVLSEADEDQIPEVAIEPDDP---VALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGEN 61
             +  +  +++     I+ +DP    ++ ++SGT+G PKGV+L++K+L  +V   V    
Sbjct: 282 IILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTV---VPLCK 338

Query: 62  PNLYLT-NGDVVLCVLPLFHIYSLNSVLLCSLRAG 95
            +++   N    L  LP+ HIY      L  +  G
Sbjct: 339 HSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGG 373

Length = 746

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 39.9 bits (93), Expect = 9e-04
 Identities = 56/237 (23%), Positives = 98/237 (41%), Gaps = 43/237 (18%)

Query: 21  IEPDDPVALPFSSGTTGLPKGVVLTHKSLI----TSVAQQVDGENPNLYLTNGDVVLCVL 76
           ++ +DP+ L ++SG+TG PKGV+ T    +    T+     D +  ++Y    D   C  
Sbjct: 272 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTAD---CGW 328

Query: 77  PLFHIYSLNSVLLCSLRAGAGVLLMQKF----EIGALLELIQRHRVSVAAVVPPLVLALA 132
              H Y    V    +  GA VL+ +      + G   +++ +++V++    P LV +L 
Sbjct: 329 ITGHSY----VTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLM 384

Query: 133 KN--PMVADYDLSSIRVVLSGAAPLGKELEDALR--------SRVPQAILGQGYGMTEAG 182
           ++    V  +   S+RV+ S   P+      A R        SR P   +   +  TE G
Sbjct: 385 RDGDEYVTRHSRKSLRVLGSVGEPINPS---AWRWFFNVVGDSRCP---ISDTWWQTETG 438

Query: 183 PVLSMCLGFAKQP----FPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRG 235
                  GF   P    +P K GS        +  ++D E G  +     G +C++ 
Sbjct: 439 -------GFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEIEGECSGYLCVKK 487

Length = 666

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 56/266 (21%), Positives = 99/266 (37%), Gaps = 48/266 (18%)

Query: 12  DEDQIPEVAIEPDDPVA---LPFSSGTTGLPKGVVLTHKSLITSVAQQVDG--ENPNLYL 66
           D D        P D  +   L ++SG+T  P GV+++H+++I +  Q +     +     
Sbjct: 145 DLDSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVP 204

Query: 67  TNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLE-------LIQRHRVS 119
                V+  LP +H   L   +   +  G   +L       A L+       L+  +  +
Sbjct: 205 PPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPV---AFLQRPARWMQLLASNPHA 261

Query: 120 VAAVVPPLVLALA----KNPMVADYDLSSIRVVLSGA-----APLGKELEDALRSRVPQA 170
            +A  P     LA     +  +A  DL  +  ++SG+     A L +  +      + + 
Sbjct: 262 FSA-APNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRET 320

Query: 171 ILGQGYGMTEA-----------GPVL------SMCLGFAKQPFPTKSG----SCGTVVRN 209
            +   YG+ EA            P         +  G AK    T  G    S G   R+
Sbjct: 321 AIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAK-RCETGGGTPLVSYG-SPRS 378

Query: 210 AELKVIDPETGASLPHNQPGEICIRG 235
             ++++DP+T    P    GEI + G
Sbjct: 379 PTVRIVDPDTCIECPAGTVGEIWVHG 404

Length = 578

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK09274	552	peptide synthase; Provisional	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	99.98
PLN02430	660	long-chain-fatty-acid-CoA ligase	99.98
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	99.98
PRK06018	542	putative acyl-CoA synthetase; Provisional	99.98
PRK13383	516	acyl-CoA synthetase; Provisional	99.98
PRK05691	4334	peptide synthase; Validated	99.97
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.97
PRK12582	624	acyl-CoA synthetase; Provisional	99.97
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	99.97
PRK05691	4334	peptide synthase; Validated	99.97
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	99.97
PRK06164	540	acyl-CoA synthetase; Validated	99.97
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.97
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK07867	529	acyl-CoA synthetase; Validated	99.97
PRK13388	540	acyl-CoA synthetase; Provisional	99.97
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.97
PRK13390	501	acyl-CoA synthetase; Provisional	99.97
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	99.97
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.97
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.97
PRK09192	579	acyl-CoA synthetase; Validated	99.97
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.97
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.97
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.96
PLN02479	567	acetate-CoA ligase	99.96
PLN03102	579	acyl-activating enzyme; Provisional	99.96
PRK08308	414	acyl-CoA synthetase; Validated	99.96
PRK13391	511	acyl-CoA synthetase; Provisional	99.96
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	99.96
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.96
PRK05850	578	acyl-CoA synthetase; Validated	99.96
PRK08162	545	acyl-CoA synthetase; Validated	99.96
PRK07868	994	acyl-CoA synthetase; Validated	99.95
PRK07798	533	acyl-CoA synthetase; Validated	99.95
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.95
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.94
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.94
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.93
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	99.93
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.91
PTZ00297	1452	pantothenate kinase; Provisional	99.88
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.68
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	99.51
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.44
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.27
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	98.82
KOG3628	1363	consensus Predicted AMP-binding protein [General f	98.33
PLN02247	606	indole-3-acetic acid-amido synthetase	97.33
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	96.99
PLN02620	612	indole-3-acetic acid-amido synthetase	96.62
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	92.71
PLN03052	728	acetate--CoA ligase; Provisional	91.57
PLN02654	666	acetate-CoA ligase	91.21
PTZ00237	647	acetyl-CoA synthetase; Provisional	91.09
PLN02736	651	long-chain acyl-CoA synthetase	91.06
PRK06839	496	acyl-CoA synthetase; Validated	90.96
PRK09274	552	peptide synthase; Provisional	90.84
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	90.59
PLN02249	597	indole-3-acetic acid-amido synthetase	90.58
PRK00174	637	acetyl-CoA synthetase; Provisional	89.44
TIGR02370	197	pyl_corrinoid methyltransferase cognate corrinoid	89.35
PRK07788	549	acyl-CoA synthetase; Validated	89.16
PRK07529	632	AMP-binding domain protein; Validated	89.16
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	89.13
PRK08316	523	acyl-CoA synthetase; Validated	88.97
PLN02574	560	4-coumarate--CoA ligase-like	88.93
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	88.87
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	88.63
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	88.55
PLN03102	579	acyl-activating enzyme; Provisional	88.48
PTZ00342	746	acyl-CoA synthetase; Provisional	87.84
PLN02614	666	long-chain acyl-CoA synthetase	87.81
PLN02861	660	long-chain-fatty-acid-CoA ligase	87.78
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	87.73
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	87.64
cd02070	201	corrinoid_protein_B12-BD B12 binding domain of cor	87.62
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	87.53
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	87.52
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	87.37
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	87.2
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	87.19
PLN02246	537	4-coumarate--CoA ligase	87.16
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	87.12
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	86.71
cd02069	213	methionine_synthase_B12_BD B12 binding domain of m	86.7
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	86.58
PLN02330	546	4-coumarate--CoA ligase-like 1	86.47
PRK02261	137	methylaspartate mutase subunit S; Provisional	86.37
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	86.32
PRK13388	540	acyl-CoA synthetase; Provisional	86.25
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	86.24
PRK05857	540	acyl-CoA synthetase; Validated	86.09
PRK07798	533	acyl-CoA synthetase; Validated	85.97
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	85.52
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	85.48
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	85.48
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	85.44
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	85.32
PRK07514	504	malonyl-CoA synthase; Validated	85.22
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	85.15
PRK13383	516	acyl-CoA synthetase; Provisional	85.1
PRK04319	570	acetyl-CoA synthetase; Provisional	85.04
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	85.02
PRK05850	578	acyl-CoA synthetase; Validated	84.78
PRK09088	488	acyl-CoA synthetase; Validated	84.66
PRK13391	511	acyl-CoA synthetase; Provisional	84.27
PRK08315	559	AMP-binding domain protein; Validated	84.2
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	83.27
PLN02860	563	o-succinylbenzoate-CoA ligase	83.1
PRK08162	545	acyl-CoA synthetase; Validated	82.98
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	82.39
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	82.19
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	82.14
PRK12583	558	acyl-CoA synthetase; Provisional	81.89
PRK13390	501	acyl-CoA synthetase; Provisional	81.83
PRK07867	529	acyl-CoA synthetase; Validated	81.76
PLN02430	660	long-chain-fatty-acid-CoA ligase	81.53
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	81.06
PRK06178	567	acyl-CoA synthetase; Validated	80.66
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	80.62
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	80.38
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	80.19
PRK06018	542	putative acyl-CoA synthetase; Provisional	80.18

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=4e-39  Score=262.47  Aligned_cols=222  Identities=29%  Similarity=0.403  Sum_probs=192.0

Q ss_pred             cchhhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhh
Q 039504            3 LHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIY   82 (240)
Q Consensus         3 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~   82 (240)
                      +.|+++.+.++.......++++|+++++|||||||+||++.++|..+..........   .+.+.++|++++..++.|++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~---~~~~~~~Dv~w~~ad~GW~~  226 (528)
T COG0365         150 LWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKF---HGDLLPGDRFWNSSDPGWIY  226 (528)
T ss_pred             ccHHHHhhccCCCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHH---hhCCCCCCEEEeCCCchhhh
Confidence            457777777777777777999999999999999999999999999877766554432   34567999999999999999


Q ss_pred             hhHHHHHHHhhcCceEEEccC--C-CHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHH
Q 039504           83 SLNSVLLCSLRAGAGVLLMQK--F-EIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKEL  159 (240)
Q Consensus        83 g~~~~~~~~l~~G~~~v~~~~--~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~  159 (240)
                      |.+..++.++..|++.++...  + ++..++++++++++|++++.|+.++.|.+.....+.++++||.+.+.|||++++.
T Consensus       227 g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~SaGEPLnpe~  306 (528)
T COG0365         227 GLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEA  306 (528)
T ss_pred             CchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeeccCCCCCHHH
Confidence            999889999999999988753  3 4999999999999999999999999999987766678999999999999999999


Q ss_pred             HHHHHHhCCCCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCC
Q 039504          160 EDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP  236 (240)
Q Consensus       160 ~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~  236 (240)
                      ++++.+.+ ++.|.+.||+||++.+....     .. ...+++.|+|+|++++.|+|.+ +++++.|+ |+|+|+.|
T Consensus       307 ~~w~~~~~-g~~i~d~~gqTEtg~~~~~~-----~~-~~~~g~~g~p~pG~~~~vvdd~-g~~~~~~~-G~Lvi~~~  374 (528)
T COG0365         307 FEWFYSAL-GVWILDIYGQTETGMGFIAG-----RP-PVKNGSSGLPLPGYAVRRVDDE-GNPVPPGV-GELVVRLP  374 (528)
T ss_pred             HHHHHHHh-CCCEeccccccccCccccCC-----CC-CcCCCCCCCCCCCceeEEECCC-CCcCCCCc-eEEEEeCC
Confidence            99999999 79999999999999544432     11 3345566999999999999955 99999999 99999987

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.7e-38  Score=260.03  Aligned_cols=214  Identities=47%  Similarity=0.755  Sum_probs=189.6

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      ......+|++.++|||||||.||||.+||+++.........    .......|+.++.+|++|.+|+...+.+.+..|.+
T Consensus       178 ~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~----~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~  253 (537)
T KOG1176|consen  178 IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKI----GWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTT  253 (537)
T ss_pred             cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhh----cccCCCCceEEEechHHHHhHHHHHHHHHHhCCce
Confidence            55667799999999999999999999999998887665444    23456689999999999999999777778888999


Q ss_pred             EEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccc
Q 039504           98 VLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG  177 (240)
Q Consensus        98 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  177 (240)
                      ++..+.++++.+++.+++|++|++.++|.++..|++.+.....+++++|.+.+||+++++++.+++++.++...+.+.||
T Consensus       254 ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YG  333 (537)
T KOG1176|consen  254 IICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYG  333 (537)
T ss_pred             EEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeec
Confidence            99999999999999999999999999999999999998777789999999999999999999999999997799999999


Q ss_pred             ccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          178 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       178 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      +||+++..+.+...   +. ..++++|++++++.+.|.+ ++|+.+++++.||||++|+.+++
T Consensus       334 mTE~~~~~~~~~~~---~e-~k~~svG~~~~g~~~~v~~-e~g~~l~~~~~GEI~vrg~~imk  391 (537)
T KOG1176|consen  334 MTEAGGLITSNDWG---PE-RKPGSVGRLLPGVRVKVLD-ETGVSLGPNQTGEICVRGPQVMK  391 (537)
T ss_pred             cccccCceeecCCC---cc-CcccccCccccceEEEeeC-CCCCCCCCCCceEEEEECcccch
Confidence            99999776665221   11 4789999999988888888 99999999999999999999874

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.3e-37  Score=260.71  Aligned_cols=212  Identities=43%  Similarity=0.687  Sum_probs=185.8

Q ss_pred             CCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCcc--ccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           21 IEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLY--LTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        21 ~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~--~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ++++|+++++|||||||.||+|.+||+++..+......    .++  +.+.|++++.+|++|.+|+...++..++.|+++
T Consensus       168 ~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~----~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~  243 (534)
T COG0318         168 VDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAA----ALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTL  243 (534)
T ss_pred             CCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHH----HhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEE
Confidence            77999999999999999999999999999988776665    334  789999999999999999997777789999999


Q ss_pred             EEcc--CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccc-hhhhhccCCCCCHHHHHHHHHhCCCCccccc
Q 039504           99 LLMQ--KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSS-IRVVLSGAAPLGKELEDALRSRVPQAILGQG  175 (240)
Q Consensus        99 v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~-lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  175 (240)
                      ++.+  .++++.++..+.+++++++.++|.++..++.........+.+ +|.++.||+++++++.+++++.|+..++.+.
T Consensus       244 v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~  323 (534)
T COG0318         244 VLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEG  323 (534)
T ss_pred             EeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEe
Confidence            9988  599999999999999999999999999999998877766665 9999999999999999999999965789999


Q ss_pred             ccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          176 YGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       176 yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ||+||++..++.+.... .  ....+.+|+|.|+++++|+|+++++++| |++|||+|+||+|++
T Consensus       324 YG~TE~~~~~~~~~~~~-~--~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~  384 (534)
T COG0318         324 YGLTETSPVVTINPPDD-L--LAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMK  384 (534)
T ss_pred             ecccccCceeecCCCch-h--hhcCCcccccCCCcEEEEEeCCCCccCC-CCceEEEEECchhhh
Confidence            99999997766653221 0  2355677999999999999988776777 999999999999874

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.1e-37  Score=261.88  Aligned_cols=213  Identities=27%  Similarity=0.451  Sum_probs=184.1

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ...++|+++++|||||||.||+|.++|+++.........    .+++.++|+++..+|++|.+++...++.++..|++++
T Consensus       179 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv  254 (539)
T PRK06334        179 DKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLK----FFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVV  254 (539)
T ss_pred             CCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH----hcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEE
Confidence            456789999999999999999999999999887666554    3457889999999999999998766788899999988


Q ss_pred             Ecc-CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccc
Q 039504          100 LMQ-KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM  178 (240)
Q Consensus       100 ~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  178 (240)
                      +.. ++++..+++.|+++++|++.++|++++.|++........++++|.+++||+++++++.+++++.|+++.+++.||+
T Consensus       255 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~  334 (539)
T PRK06334        255 FAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGT  334 (539)
T ss_pred             EecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccc
Confidence            875 5899999999999999999999999999988765555677899999999999999999999999988899999999


Q ss_pred             cccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       179 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ||++.++....    ........++|+|+++++++|+|++++++++.|+.|||+|+|+.+++
T Consensus       335 TE~~~~~~~~~----~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~  392 (539)
T PRK06334        335 TECSPVITINT----VNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFS  392 (539)
T ss_pred             cccCceEEecc----CCCCCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCcccc
Confidence            99986654331    11122346799999999999999778899999999999999998874

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=1.6e-36  Score=255.16  Aligned_cols=223  Identities=80%  Similarity=1.323  Sum_probs=190.4

Q ss_pred             CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504           17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGA   96 (240)
Q Consensus        17 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~   96 (240)
                      +.....++++++++|||||||.||++.++|+++..............+.+.++|+++..+|++|.+++...++.++..|+
T Consensus       172 ~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~  251 (537)
T PLN02246        172 PEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGA  251 (537)
T ss_pred             CCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCC
Confidence            34456788999999999999999999999999988776554433334567899999999999999998766788999999


Q ss_pred             eEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccc
Q 039504           97 GVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGY  176 (240)
Q Consensus        97 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  176 (240)
                      ++++.+++++..+++.++++++|++.++|+++..|.+........++++|.+++||+++++++.+.+++.|++..+++.|
T Consensus       252 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~Y  331 (537)
T PLN02246        252 AILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGY  331 (537)
T ss_pred             EEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccc
Confidence            99999999999999999999999999999999999887665556678999999999999999999999999888899999


Q ss_pred             cccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          177 GMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       177 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      |+||++.++..+...........++++|+|.++++++|+|++++++++.|+.|||+|+|+.++
T Consensus       332 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~  394 (537)
T PLN02246        332 GMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIM  394 (537)
T ss_pred             cccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEEEECCchh
Confidence            999998765443221112223345789999999999999988899999999999999999876

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=4.1e-36  Score=253.65  Aligned_cols=219  Identities=36%  Similarity=0.550  Sum_probs=181.7

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCcc-ccCCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLY-LTNGDVVLCVLPLFHIYSLNSVLLCSLRAGA   96 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~-~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~   96 (240)
                      .....++++++++|||||||.||+|.++|+++......+......... ....++++..+|++|.+++...++.++..|+
T Consensus       192 ~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~  271 (560)
T PLN02574        192 KPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGS  271 (560)
T ss_pred             cCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCC
Confidence            344567899999999999999999999999998776654321111111 2356788899999999999866778888999


Q ss_pred             eEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCC-CCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccc
Q 039504           97 GVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV-ADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG  175 (240)
Q Consensus        97 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~-~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  175 (240)
                      ++++.+.+++..+++.++++++|++.++|++++.|.+.... ....++++|.++++|+++++++++++.+.|++.++++.
T Consensus       272 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~  351 (560)
T PLN02574        272 TIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQG  351 (560)
T ss_pred             EEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEec
Confidence            99999899999999999999999999999999999887543 34567899999999999999999999999988999999


Q ss_pred             ccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          176 YGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       176 yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      ||+||++.+.....   .........++|++.|+++++|+|++++++++.|+.|||+|+|+.++
T Consensus       352 YG~tE~~~~~~~~~---~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~  412 (560)
T PLN02574        352 YGMTESTAVGTRGF---NTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVM  412 (560)
T ss_pred             ccccccCceeecCC---CccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeEEEEECcchh
Confidence            99999986543221   11122345789999999999999988899999999999999999876

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=1.2e-36  Score=236.62  Aligned_cols=232  Identities=26%  Similarity=0.413  Sum_probs=197.8

Q ss_pred             CcchhhHhhcCCCCC------CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEe
Q 039504            2 CLHFTVLSEADEDQI------PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCV   75 (240)
Q Consensus         2 ~~~~~~l~~~~~~~~------~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~   75 (240)
                      ...++|++...+.+.      ......|+|++.|.|||||||.||++.+||.+++++......    ..++...+++...
T Consensus       206 a~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~----r~g~~e~~~i~~~  281 (596)
T KOG1177|consen  206 AFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGA----RAGYNEKHRICIP  281 (596)
T ss_pred             ceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHH----HhCcCcceEEEec
Confidence            345667776554321      234567899999999999999999999999999998877665    4577888899999


Q ss_pred             cchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCC
Q 039504           76 LPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAP  154 (240)
Q Consensus        76 ~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~  154 (240)
                      .|++|.+|.....++++..|+++|++. .+++.+.+++|.++++|.++++|.++..|+.....++.+++++|-++.+|++
T Consensus       282 ~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigGa~  361 (596)
T KOG1177|consen  282 NPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGGAP  361 (596)
T ss_pred             CchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeCCCC
Confidence            999999998888999999999999975 5999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhCCCCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEe
Q 039504          155 LGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR  234 (240)
Q Consensus       155 ~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~  234 (240)
                      +++++++.+.....--.+...||+||++...++..  ..++......++|+..++.+..|+| +.|..+|.|..|||++|
T Consensus       362 ~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~--~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~~~Gel~iR  438 (596)
T KOG1177|consen  362 VSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSL--LGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLGTKGELLIR  438 (596)
T ss_pred             CCHHHHHHHHHhhCceeeEEEeeccccCcceeeec--CCCCHHHHHhhhhhccccccccccc-CCCCccccCCCceEEEE
Confidence            99999999999763233667899999997766541  2233344557999999999999999 77999999999999999


Q ss_pred             CCCCCC
Q 039504          235 GPQIMK  240 (240)
Q Consensus       235 ~~~~~~  240 (240)
                      |+++|+
T Consensus       439 GY~tMl  444 (596)
T KOG1177|consen  439 GYSTML  444 (596)
T ss_pred             echhhe
Confidence            998763

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.4e-36  Score=251.38  Aligned_cols=207  Identities=25%  Similarity=0.378  Sum_probs=178.6

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .+++.++++|||||||.||+|.++|.++.........    .+.+.++|+++...|++|.+|+. .++.++..|+++++.
T Consensus       205 ~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~  279 (549)
T PRK07788        205 PPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLS----RVPFRAGETTLLPAPMFHATGWA-HLTLAMALGSTVVLR  279 (549)
T ss_pred             CCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHh----hCCCCcCCeEEEccchHHHHHHH-HHHHHHHhCCEEEEC
Confidence            4577899999999999999999999999887666554    44578899999999999999987 567789999999999


Q ss_pred             cCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCC--CCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccc
Q 039504          102 QKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV--ADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT  179 (240)
Q Consensus       102 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  179 (240)
                      ..+++..+++.++++++|++.++|++++.+.+....  ....++++|.+++||+++++++.+++++.| +.++++.||+|
T Consensus       280 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~T  358 (549)
T PRK07788        280 RRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAF-GPVLYNLYGST  358 (549)
T ss_pred             CCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHh-CccceeccCcc
Confidence            889999999999999999999999999999987654  445678999999999999999999999998 67899999999


Q ss_pred             ccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          180 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       180 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      |++..+....    ......++++|+|.++++++|+| +++++++.|+.|||+|+|+.++
T Consensus       359 E~~~~~~~~~----~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~  413 (549)
T PRK07788        359 EVAFATIATP----EDLAEAPGTVGRPPKGVTVKILD-ENGNEVPRGVVGRIFVGNGFPF  413 (549)
T ss_pred             hhchhhccCh----hhhhhcCCCcccCCCCcEEEEEC-CCcCCCCCCCeEEEEEeCCCcc
Confidence            9875543321    11223457899999999999999 6689999999999999999875

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1e-35  Score=255.43  Aligned_cols=213  Identities=24%  Similarity=0.304  Sum_probs=170.8

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      ....+|+|+++|+|||||||.||||.+||+++...+.......  .....+.|++++++|++|++++. ..+.+++.|++
T Consensus       298 ~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~--~~~~~~~d~~ls~LPL~Hi~~~~-~~~~~l~~G~~  374 (746)
T PTZ00342        298 IQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHS--IFKKYNPKTHLSYLPISHIYERV-IAYLSFMLGGT  374 (746)
T ss_pred             CCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcc--cccCCCCCeEEEeCcHHHHHHHH-HHHHHHHcCCE
Confidence            3456789999999999999999999999999988876543311  11123558999999999999987 56778999999


Q ss_pred             EEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCC-------C-CCC------------------------------
Q 039504           98 VLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNP-------M-VAD------------------------------  139 (240)
Q Consensus        98 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~-------~-~~~------------------------------  139 (240)
                      +++.+. ++..+++.|+++++|+++++|.+++.+.+..       . ..+                              
T Consensus       375 i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~  453 (746)
T PTZ00342        375 INIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHISS  453 (746)
T ss_pred             EEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence            988765 8999999999999999999999999887521       0 000                              


Q ss_pred             ----CCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccccccccchhhccCCCCCCCCCCCCcccccc-CCceEEE
Q 039504          140 ----YDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVV-RNAELKV  214 (240)
Q Consensus       140 ----~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~v~i  214 (240)
                          ....++|.+++||+++++++.++++..+ ++++++.||+||++..++...     ......+++|+|+ |+++++|
T Consensus       454 kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~-g~~i~~gYGlTEt~~~~~~~~-----~~~~~~gsvG~p~~pg~e~ki  527 (746)
T PTZ00342        454 KIKDKVNPNLEVILNGGGKLSPKIAEELSVLL-NVNYYQGYGLTETTGPIFVQH-----ADDNNTESIGGPISPNTKYKV  527 (746)
T ss_pred             HHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhc-CCCEEEeeccCcccceeeecc-----CCCCCcccccCcCCCcEEEEE
Confidence                0014789999999999999999999988 789999999999976554331     1234568999998 9999999


Q ss_pred             eeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          215 IDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       215 ~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      +|++++...+.++.|||+|+||.+|+
T Consensus       528 ~d~~~~~~~~~~~~GEl~vrGp~v~~  553 (746)
T PTZ00342        528 RTWETYKATDTLPKGELLIKSDSIFS  553 (746)
T ss_pred             ecccccccCCCCCceEEEEecCcccc
Confidence            99766666666678999999999874

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.5e-35  Score=245.51  Aligned_cols=211  Identities=34%  Similarity=0.518  Sum_probs=184.8

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ....++++++++|||||||.||+|.++|.++.........    .+.+.++|++++.+|++|.+|+...++.++..|+++
T Consensus       185 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i  260 (546)
T PRK08314        185 HTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVL----WSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATV  260 (546)
T ss_pred             CCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHH----hhCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeE
Confidence            3456789999999999999999999999999888776554    345788999999999999999887788999999999


Q ss_pred             EEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccc
Q 039504           99 LLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM  178 (240)
Q Consensus        99 v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  178 (240)
                      ++.+.+++..+++.++++++|++.++|+++..+..........++++|.+++||+++++++.+++.+.| +.++++.||+
T Consensus       261 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~  339 (546)
T PRK08314        261 VLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPEAVAERLKELT-GLDYVEGYGL  339 (546)
T ss_pred             EecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCCHHHHHHHHHHc-CCcEEecccc
Confidence            999999999999999999999999999999999876555556678899999999999999999999998 7899999999


Q ss_pred             cccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       179 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      ||++.......     .......++|+|.++++++|+|++++++++.|+.|||+|+|++++
T Consensus       340 tE~~~~~~~~~-----~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~  395 (546)
T PRK08314        340 TETMAQTHSNP-----PDRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVF  395 (546)
T ss_pred             cccccceecCC-----CcCCCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCchh
Confidence            99986554321     112345689999999999999988899999999999999999875

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=4e-35  Score=244.45  Aligned_cols=208  Identities=22%  Similarity=0.229  Sum_probs=170.2

Q ss_pred             CCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEE
Q 039504           21 IEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLL  100 (240)
Q Consensus        21 ~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~  100 (240)
                      .+++|+++|+|||||||.||+|.++|.++.........    .++++++|++++.+|++|..++. .++.++..|+++++
T Consensus       116 ~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~t~v~  190 (499)
T PLN03051        116 APVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWA----HMDIQPGDVVCWPTNLGWMMGPW-LLYSAFLNGATLAL  190 (499)
T ss_pred             CCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHH----hcCCCCCCEEEEccCcceeeehH-HHHHHHHcCCEEEe
Confidence            35689999999999999999999999998765543333    33578899999999999998876 67888999999988


Q ss_pred             ccC-CCHHHHHHHHHhccceeeeechHHHHHHHhCCC--CCCCCccchhhhhccCCCCCHHHHHHHHHhCC-CCcccccc
Q 039504          101 MQK-FEIGALLELIQRHRVSVAAVVPPLVLALAKNPM--VADYDLSSIRVVLSGAAPLGKELEDALRSRVP-QAILGQGY  176 (240)
Q Consensus       101 ~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~-~~~i~~~y  176 (240)
                      .+. +++..+++.|+++++|++.++|++++.|.+...  ....+++++|.+++||+++++++.+++++.++ +.++++.|
T Consensus       191 ~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~Y  270 (499)
T PLN03051        191 YGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYC  270 (499)
T ss_pred             cCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhheEEEecCCCCCHHHHHHHHHhccccceeEeee
Confidence            864 788999999999999999999999999887543  23456789999999999999999988877431 47899999


Q ss_pred             cccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCC--CCceEEEeCCCC
Q 039504          177 GMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHN--QPGEICIRGPQI  238 (240)
Q Consensus       177 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g--~~Gel~v~~~~~  238 (240)
                      |+||++..+....    .......+++|+|.++++++|+| +++++++.|  ++|||+|+||.+
T Consensus       271 G~TE~~~~~~~~~----~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~  329 (499)
T PLN03051        271 GGTELASGYISST----LLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPML  329 (499)
T ss_pred             ccccccceeeccc----ccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcC
Confidence            9999864332211    11123457899999999999999 678999998  479999999976

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=4.8e-35  Score=251.06  Aligned_cols=214  Identities=22%  Similarity=0.313  Sum_probs=177.3

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHH-hhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVA-QQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGA   96 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~   96 (240)
                      ...++++|+++|+|||||||.||+|+++|.++..... ....    .++++++|++++..|++|+.+....++.++..|+
T Consensus       269 ~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~  344 (666)
T PLN02654        269 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKY----AFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGA  344 (666)
T ss_pred             ceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHH----hcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCc
Confidence            3346789999999999999999999999998765432 2222    3467899999999999999998767889999999


Q ss_pred             eEEEccC----CCHHHHHHHHHhccceeeeechHHHHHHHhCCCC--CCCCccchhhhhccCCCCCHHHHHHHHHhCCC-
Q 039504           97 GVLLMQK----FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV--ADYDLSSIRVVLSGAAPLGKELEDALRSRVPQ-  169 (240)
Q Consensus        97 ~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~-  169 (240)
                      ++++.++    .++..++++|+++++|++.++|++++.|.+....  ...+++++|.++++|+++++++.+++.+.++. 
T Consensus       345 tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~  424 (666)
T PLN02654        345 TVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDS  424 (666)
T ss_pred             eEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEecCCCCHHHHHHHHHHhCCC
Confidence            9998753    5899999999999999999999999999886532  33567899999999999999999999999843 


Q ss_pred             -CcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeC--CCCC
Q 039504          170 -AILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRG--PQIM  239 (240)
Q Consensus       170 -~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~--~~~~  239 (240)
                       +.+.+.||+||+++......   .......++++|+|.|+++++|+| +++++++.++.|||+|++  |+++
T Consensus       425 ~~~i~~~yg~TE~g~~~~~~~---~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~~~~~~Gel~v~~~~p~~~  493 (666)
T PLN02654        425 RCPISDTWWQTETGGFMITPL---PGAWPQKPGSATFPFFGVQPVIVD-EKGKEIEGECSGYLCVKKSWPGAF  493 (666)
T ss_pred             CCceeccccccccCCeeeccC---CCCCCCCCCccCCCCCCceEEEEC-CCCCCCCCCCceEEEEcCCCchhh
Confidence             68999999999986554321   111234567899999999999999 668999999999999998  5554

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-34  Score=245.44  Aligned_cols=226  Identities=25%  Similarity=0.357  Sum_probs=185.1

Q ss_pred             chhhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhh
Q 039504            4 HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS   83 (240)
Q Consensus         4 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g   83 (240)
                      +++++.+...+........++|+++++|||||||.||+|.++|.++.........    .+.+.++|++++..|++|..|
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~g  260 (570)
T PRK04319        185 DFNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKY----VLDLHEDDVYWCTADPGWVTG  260 (570)
T ss_pred             CHHHHHhhcCCcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHH----hcCCCCCceEEecCChHHhhC
Confidence            4555544444333344567789999999999999999999999999877665544    446788999999999999998


Q ss_pred             hHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCC--CCCCccchhhhhccCCCCCHHHH
Q 039504           84 LNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV--ADYDLSSIRVVLSGAAPLGKELE  160 (240)
Q Consensus        84 ~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~lr~v~~~G~~~~~~~~  160 (240)
                      ....++.++..|+++++.. .+++..+++.++++++|++.++|++++.|.+....  ....++++|.++++|+++++++.
T Consensus       261 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~  340 (570)
T PRK04319        261 TSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVV  340 (570)
T ss_pred             chHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHH
Confidence            8767889999999988865 58999999999999999999999999999876432  23457789999999999999999


Q ss_pred             HHHHHhCCCCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeC--CCC
Q 039504          161 DALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRG--PQI  238 (240)
Q Consensus       161 ~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~--~~~  238 (240)
                      +++++.+ +.++++.||+||++..+....    ......++++|+|.|+++++|+| +++++++.|+.|||+|+|  |++
T Consensus       341 ~~~~~~~-g~~i~~~YG~tE~~~~~~~~~----~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~  414 (570)
T PRK04319        341 RWGMKVF-GLPIHDNWWMTETGGIMIANY----PAMDIKPGSMGKPLPGIEAAIVD-DQGNELPPNRMGNLAIKKGWPSM  414 (570)
T ss_pred             HHHHHHh-CCCeEeceeecccCCEEEecC----CCCCCCCCcCcCCCCCCEEEEEC-CCCCCCCCCCceEEEEcCCCChH
Confidence            9999988 789999999999986543221    11234567899999999999999 568889999999999997  655


Q ss_pred             C
Q 039504          239 M  239 (240)
Q Consensus       239 ~  239 (240)
                      +
T Consensus       415 ~  415 (570)
T PRK04319        415 M  415 (570)
T ss_pred             H
Confidence            4

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.7e-34  Score=241.58  Aligned_cols=228  Identities=32%  Similarity=0.526  Sum_probs=192.6

Q ss_pred             chhhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhh
Q 039504            4 HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS   83 (240)
Q Consensus         4 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g   83 (240)
                      +|+++..............++++++++|||||||.||+|.++|.++.........    .+++.++|++++.+|++|.++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  221 (513)
T PRK07656        146 TFTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAE----YLGLTEGDRYLAANPFFHVFG  221 (513)
T ss_pred             cHHHHHhcCCCCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHH----hhCCCCCCeEEEccchHHHHH
Confidence            4455554433323444567889999999999999999999999999887766555    456789999999999999999


Q ss_pred             hHHHHHHHhhcCceEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHH
Q 039504           84 LNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDAL  163 (240)
Q Consensus        84 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~  163 (240)
                      +...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+........++++|.++++|+++++++.+++
T Consensus       222 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~  301 (513)
T PRK07656        222 YKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERF  301 (513)
T ss_pred             HHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHH
Confidence            88778999999999999888999999999999999999999999999999877766778899999999999999999999


Q ss_pred             HHhCCCC-cccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          164 RSRVPQA-ILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       164 ~~~~~~~-~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      ++.+ +. .+++.||+||++.+...+....  .......++|+|.++++++|+| +++++++.|+.|||+|+|+.++
T Consensus       302 ~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~--~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~  374 (513)
T PRK07656        302 ESEL-GVDIVLTGYGLSEASGVTTFNRLDD--DRKTVAGTIGTAIAGVENKIVN-ELGEEVPVGEVGELLVRGPNVM  374 (513)
T ss_pred             HHHc-CCCceEeEEccccCCCceeecCccc--cccccCCCccccCCCcEEEEEC-CCCCCCCCCCceEEEEEcchhh
Confidence            9999 55 8999999999987766543211  1112257899999999999999 6689999999999999998765

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=1.6e-34  Score=246.95  Aligned_cols=228  Identities=24%  Similarity=0.339  Sum_probs=182.9

Q ss_pred             hhhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhh
Q 039504            5 FTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSL   84 (240)
Q Consensus         5 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~   84 (240)
                      ++++.+...........+++|+++|+|||||||.||+|.++|.++..........   .+++.++|++++..|++|+.+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~g~  293 (625)
T TIGR02188       217 WHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKY---VFDIKDGDIFWCTADVGWITGH  293 (625)
T ss_pred             HHHHHhhcCCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHh---ccCCCCCcEEEECCCchhhhcc
Confidence            4444444333334445678999999999999999999999999976554332221   3467889999999999999887


Q ss_pred             HHHHHHHhhcCceEEEccC----CCHHHHHHHHHhccceeeeechHHHHHHHhCCCC--CCCCccchhhhhccCCCCCHH
Q 039504           85 NSVLLCSLRAGAGVLLMQK----FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV--ADYDLSSIRVVLSGAAPLGKE  158 (240)
Q Consensus        85 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~lr~v~~~G~~~~~~  158 (240)
                      ...++.++..|+++++.+.    .++..+++.++++++|++.++|++++.|.+....  ....++++|.++++|++++++
T Consensus       294 ~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~  373 (625)
T TIGR02188       294 SYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPE  373 (625)
T ss_pred             HHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHH
Confidence            6568899999999998753    4899999999999999999999999999886543  234578999999999999999


Q ss_pred             HHHHHHHhCC--CCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCC-CCCCceEEEeC
Q 039504          159 LEDALRSRVP--QAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLP-HNQPGEICIRG  235 (240)
Q Consensus       159 ~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~-~g~~Gel~v~~  235 (240)
                      +.+++.+.++  ++++++.||+||++..+.....   ......++++|+|.++++++|+| +++++++ .|+.|||+|++
T Consensus       374 ~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~---~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~~~g~~GeL~v~~  449 (625)
T TIGR02188       374 AWMWYYKVVGKERCPIVDTWWQTETGGIMITPLP---GATPTKPGSATLPFFGIEPAVVD-EEGNPVEGPGEGGYLVIKQ  449 (625)
T ss_pred             HHHHHHHHcCCCCCceEecccccccCCceeecCC---CCCCcCCCcccCCcCCceEEEEC-CCCCCCCCCCCeEEEEEcc
Confidence            9999999884  3789999999999866443211   11234567899999999999999 7799999 99999999999


Q ss_pred             --CCCC
Q 039504          236 --PQIM  239 (240)
Q Consensus       236 --~~~~  239 (240)
                        |+++
T Consensus       450 p~p~~~  455 (625)
T TIGR02188       450 PWPGML  455 (625)
T ss_pred             CCCccc
Confidence              4554

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=2.3e-34  Score=242.48  Aligned_cols=211  Identities=29%  Similarity=0.430  Sum_probs=183.0

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ...++++++++|||||||.||+|.++|.++.........    .+++.++|+++...|++|..++...++.++..|++++
T Consensus       193 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~  268 (547)
T PRK13295        193 RPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAE----RLGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAV  268 (547)
T ss_pred             CCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHH----HhCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEE
Confidence            346689999999999999999999999999887776554    4467889999999999999988767889999999999


Q ss_pred             EccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccc
Q 039504          100 LMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT  179 (240)
Q Consensus       100 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  179 (240)
                      +.+.+++..+++.+++++++++.++|+++..+..........++++|.++++|+++++++.+++++.+ ++++++.||+|
T Consensus       269 ~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~~~~~YG~T  347 (547)
T PRK13295        269 LQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAAL-GAKIVSAWGMT  347 (547)
T ss_pred             eCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHHHHHHHHh-CCCeEEeccCC
Confidence            99889999999999999999999999999999987766666788999999999999999999999998 89999999999


Q ss_pred             ccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          180 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       180 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      |++.....+.   .........++|+|.++++++|+| +++++++.|+.|||+|+|+.++
T Consensus       348 E~~~~~~~~~---~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~  403 (547)
T PRK13295        348 ENGAVTLTKL---DDPDERASTTDGCPLPGVEVRVVD-ADGAPLPAGQIGRLQVRGCSNF  403 (547)
T ss_pred             CCCCeeeccC---CCcchhccCccccccCCcEEEEEC-CCCCCCCCCCCCeEEEEcCccc
Confidence            9986544331   111122346789999999999999 5689999999999999999875

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=1.3e-34  Score=247.45  Aligned_cols=213  Identities=23%  Similarity=0.291  Sum_probs=174.8

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      .+.++++++|+|||||||.||+|.++|.++..........   .++++++|++++..|++|+.++...++.++..|++++
T Consensus       228 ~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v  304 (628)
T TIGR02316       228 WLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWA---IFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATV  304 (628)
T ss_pred             ecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHH---hcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEE
Confidence            3578999999999999999999999999975443322221   3467889999999999999887667889999999999


Q ss_pred             EccC----CCHHHHHHHHHhccceeeeechHHHHHHHhCCCC--CCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccc
Q 039504          100 LMQK----FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV--ADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILG  173 (240)
Q Consensus       100 ~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~  173 (240)
                      +.+.    .++..++++++++++|++.++|++++.|.+....  ...+++++|.++++|+++++++.+++++.+ +..++
T Consensus       305 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~-~~~~~  383 (628)
T TIGR02316       305 LYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGL-GKPVI  383 (628)
T ss_pred             EeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHh-CCCEE
Confidence            8753    5789999999999999999999999998876432  345678999999999999999999999988 78899


Q ss_pred             ccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCC
Q 039504          174 QGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQ  237 (240)
Q Consensus       174 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~  237 (240)
                      +.||+||++..+..... .........+++|+|+|+++++|+|++++++++.|+.|||+|+||.
T Consensus       384 ~~yG~TE~~~~~~~~~~-~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~  446 (628)
T TIGR02316       384 DNYWQTETGWPVLAIMP-GLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPL  446 (628)
T ss_pred             ecccccccCceeecCCC-CCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCC
Confidence            99999999854332211 1111123457889999999999999768999999999999999983

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=2.7e-34  Score=245.48  Aligned_cols=227  Identities=30%  Similarity=0.436  Sum_probs=182.9

Q ss_pred             chhhHhhcCCCCC--CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHh
Q 039504            4 HFTVLSEADEDQI--PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI   81 (240)
Q Consensus         4 ~~~~l~~~~~~~~--~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~   81 (240)
                      +|++.++......  ......++++++++|||||||.||+|.++|.++.........    .+++.++|++++.+|++|.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~  266 (632)
T PRK07529        191 DFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGAL----LLGLGPGDTVFCGLPLFHV  266 (632)
T ss_pred             CHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHH----hcCCCCCCEEEEecCchhh
Confidence            4555544433221  223456799999999999999999999999999877655544    3456889999999999999


Q ss_pred             hhhHHHHHHHhhcCceEEEccC--C-C---HHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCC
Q 039504           82 YSLNSVLLCSLRAGAGVLLMQK--F-E---IGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPL  155 (240)
Q Consensus        82 ~g~~~~~~~~l~~G~~~v~~~~--~-~---~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~  155 (240)
                      .+....++.++..|+++++.++  + +   ...++++++++++|++.++|+++..|.+.... ..+++++|.+++||+++
T Consensus       267 ~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-~~~~~slr~v~~gg~~l  345 (632)
T PRK07529        267 NALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD-GHDISSLRYALCGAAPL  345 (632)
T ss_pred             hHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-CCCccceEEEEEcCCCC
Confidence            9988778999999999998753  2 1   36789999999999999999999999886533 34678999999999999


Q ss_pred             CHHHHHHHHHhCCCCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeC-CCC---CCCCCCCCceE
Q 039504          156 GKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDP-ETG---ASLPHNQPGEI  231 (240)
Q Consensus       156 ~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~-~~~---~~~~~g~~Gel  231 (240)
                      ++++.+++++.+ ++++++.||+||++.++..+.    .......+++|+|+|+++++|++. +++   ++++.|+.|||
T Consensus       346 ~~~l~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~----~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel  420 (632)
T PRK07529        346 PVEVFRRFEAAT-GVRIVEGYGLTEATCVSSVNP----PDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVL  420 (632)
T ss_pred             CHHHHHHHHHHh-CCcEeeeecccccCcccccCC----ccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEE
Confidence            999999999998 899999999999987655432    112335678999999999988532 345   78999999999


Q ss_pred             EEeCCCCCC
Q 039504          232 CIRGPQIMK  240 (240)
Q Consensus       232 ~v~~~~~~~  240 (240)
                      +|+||++++
T Consensus       421 ~v~gp~v~~  429 (632)
T PRK07529        421 CIAGPNVFS  429 (632)
T ss_pred             EEECCCccc
Confidence            999999873

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=7.8e-35  Score=249.48  Aligned_cols=230  Identities=27%  Similarity=0.401  Sum_probs=172.2

Q ss_pred             chhhHhhcCCC-CCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCC-CCccccCCcEEEEecchHHh
Q 039504            4 HFTVLSEADED-QIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGEN-PNLYLTNGDVVLCVLPLFHI   81 (240)
Q Consensus         4 ~~~~l~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~-~~~~~~~~d~~l~~~p~~~~   81 (240)
                      .|+++.+.... ........++|+++|+|||||||.||||.++|+++..........+. ....+.++|++++++|++|+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~  281 (666)
T PLN02614        202 AWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHI  281 (666)
T ss_pred             EHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHH
Confidence            45555543321 11223356899999999999999999999999999887655433211 01246789999999999999


Q ss_pred             hhhHHHHHHHhhcCceEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCC------------------------
Q 039504           82 YSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV------------------------  137 (240)
Q Consensus        82 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~------------------------  137 (240)
                      ++.. ..+.++..|+++++.+ +++..+++.++++++|+++++|.+++.+......                        
T Consensus       282 ~~~~-~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  359 (666)
T PLN02614        282 FDRV-IEECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNM  359 (666)
T ss_pred             HHHH-HHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            9886 4566778899988864 6899999999999999999999999987642100                        


Q ss_pred             -------CCC-------------Cc-cchhhhhccCCCCCHHHHHHHHHhCCCCcccccccccccccchhhccCCCCCCC
Q 039504          138 -------ADY-------------DL-SSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPF  196 (240)
Q Consensus       138 -------~~~-------------~~-~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~  196 (240)
                             ...             .+ +++|.+++||+++++++ +++.+.++++++++.||+||++...+...    ...
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~TE~~~~~~~~~----~~~  434 (666)
T PLN02614        360 KKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTFVSL----PDE  434 (666)
T ss_pred             HcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchHhhhhheeeec----ccc
Confidence                   000             01 47899999999999875 56666665689999999999875433221    111


Q ss_pred             CCCCCccccccCCceEEEeeC-C-CCCCCCCCCCceEEEeCCCCCC
Q 039504          197 PTKSGSCGTVVRNAELKVIDP-E-TGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       197 ~~~~~~~G~~~~~~~v~i~d~-~-~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ....+++|+|.|+++++|+|. + .+++++.|+.|||+|+||.+|+
T Consensus       435 ~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~  480 (666)
T PLN02614        435 LDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFS  480 (666)
T ss_pred             CCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccc
Confidence            224578999999999999983 3 2478999999999999999874

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.4e-34  Score=245.32  Aligned_cols=228  Identities=25%  Similarity=0.386  Sum_probs=181.8

Q ss_pred             hhhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhh
Q 039504            5 FTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSL   84 (240)
Q Consensus         5 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~   84 (240)
                      ++++.+......+.....++|+++|+|||||||.||+|.++|.++..........   .++++++|++++..|++|+.+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~  302 (637)
T PRK00174        226 WHELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKY---VFDYKDGDVYWCTADVGWVTGH  302 (637)
T ss_pred             HHHHHhhcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHh---ccCCCCCcEEEEcCCchHhhhh
Confidence            4444443333333445678899999999999999999999999976554332221   3467889999999999999887


Q ss_pred             HHHHHHHhhcCceEEEccC----CCHHHHHHHHHhccceeeeechHHHHHHHhCCCC--CCCCccchhhhhccCCCCCHH
Q 039504           85 NSVLLCSLRAGAGVLLMQK----FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV--ADYDLSSIRVVLSGAAPLGKE  158 (240)
Q Consensus        85 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~lr~v~~~G~~~~~~  158 (240)
                      ...++.++..|+++++.+.    .++..+++.++++++|++.++|++++.|++....  ....++++|.++++|++++++
T Consensus       303 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~  382 (637)
T PRK00174        303 SYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPE  382 (637)
T ss_pred             HHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHH
Confidence            7678899999999988653    5799999999999999999999999999886543  234578899999999999999


Q ss_pred             HHHHHHHhCCC--CcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeC-
Q 039504          159 LEDALRSRVPQ--AILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRG-  235 (240)
Q Consensus       159 ~~~~~~~~~~~--~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~-  235 (240)
                      +.+++.+.++.  +++++.||+||++..+.....   .......+++|+|+++++++|+| +++++++.|+.|||+|+| 
T Consensus       383 ~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~---~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~  458 (637)
T PRK00174        383 AWEWYYKVVGGERCPIVDTWWQTETGGIMITPLP---GATPLKPGSATRPLPGIQPAVVD-EEGNPLEGGEGGNLVIKDP  458 (637)
T ss_pred             HHHHHHHHhCCCCCceEecccccccCCceEecCC---CCCCcCCCcccCCCCCceEEEEC-CCCCCCCCCCcEEEEEcCC
Confidence            99999998842  789999999999875543211   11223457899999999999999 678999999999999999 


Q ss_pred             -CCCC
Q 039504          236 -PQIM  239 (240)
Q Consensus       236 -~~~~  239 (240)
                       |+++
T Consensus       459 ~p~~~  463 (637)
T PRK00174        459 WPGMM  463 (637)
T ss_pred             CCccc
Confidence             4554

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=1.5e-35  Score=242.06  Aligned_cols=211  Identities=41%  Similarity=0.642  Sum_probs=174.6

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhh-cCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEE
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQV-DGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLL  100 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~-~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~  100 (240)
                      .++++++++|||||||.||+|.++|.++...+..+. ..   ..+++  |++++.+|++|.+|+...++.++..|+++++
T Consensus       153 ~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~---~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~  227 (417)
T PF00501_consen  153 SPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPE---YFGLG--DRILSFLPLSHIFGLISALLAALFSGATLVL  227 (417)
T ss_dssp             TTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHH---TTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEE
T ss_pred             CccceeEeecccccccccccccccccccccccccccccc---ccccC--ceEEeeccccccccccccccccccccccccc
Confidence            579999999999999999999999999988876653 10   11122  6999999999999996689999999999999


Q ss_pred             ccCCC---HHHHHHHHHhccceeeeechHHHHHHHhCCCC----CCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccc
Q 039504          101 MQKFE---IGALLELIQRHRVSVAAVVPPLVLALAKNPMV----ADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILG  173 (240)
Q Consensus       101 ~~~~~---~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~----~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~  173 (240)
                      .+...   ++.+++.+++++++++.++|++++.+.+..+.    ....++++|.++++|+++++++.+++++.++.++++
T Consensus       228 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~  307 (417)
T PF00501_consen  228 PSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPII  307 (417)
T ss_dssp             ESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEE
T ss_pred             cccccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhhccccccccccccce
Confidence            98754   47789999999999999999999999883222    134778899999999999999999999999656999


Q ss_pred             ccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          174 QGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       174 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      +.||+||++.++....   ........+++|.|+|+++++|+|+++++++++|+.|||+|+||.+++
T Consensus       308 ~~YG~tE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~  371 (417)
T PF00501_consen  308 NLYGSTETGSIATIRP---PEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFS  371 (417)
T ss_dssp             EEEEEGGGSSEEEEEE---TTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBS
T ss_pred             ecccccccceeeeccc---ccccccccccccccccccccccccccccccccccccccccccCCccce
Confidence            9999999998876432   111223567899999999999999888999999999999999998864

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=2.7e-34  Score=260.34  Aligned_cols=217  Identities=33%  Similarity=0.547  Sum_probs=185.6

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ...+++|+++++|||||||.||+|.++|+++.........    .++..++|++++.+|++|.+++...++.++..|+++
T Consensus       777 ~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~  852 (1146)
T PRK08633        777 PTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISD----VFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKV  852 (1146)
T ss_pred             CCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHH----hcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEE
Confidence            3456899999999999999999999999999888776655    445788999999999999999986678889999998


Q ss_pred             EEcc-CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccc
Q 039504           99 LLMQ-KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG  177 (240)
Q Consensus        99 v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  177 (240)
                      ++.+ .++++.+++.++++++|++.++|++++.+.+........++++|.+++||+++++++.+++++.+ ++++++.||
T Consensus       853 v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG  931 (1146)
T PRK08633        853 VYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKF-GIRILEGYG  931 (1146)
T ss_pred             EEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHh-CCCeecccc
Confidence            8865 58999999999999999999999999999886655566778999999999999999999999998 789999999


Q ss_pred             ccccccchhhccCCCC-----CCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          178 MTEAGPVLSMCLGFAK-----QPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       178 ~tE~~~~~~~~~~~~~-----~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      +||++.++........     .......+++|+|.|+++++|+|+++++++|.|+.|||+|+|+.+++
T Consensus       932 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~  999 (1146)
T PRK08633        932 ATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMK  999 (1146)
T ss_pred             cccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCccc
Confidence            9999876554321110     01123467899999999999999989999999999999999998763

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=6.8e-35  Score=238.77  Aligned_cols=231  Identities=28%  Similarity=0.404  Sum_probs=181.8

Q ss_pred             CcchhhHhhcCCCCC-CC-CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCC--CCccccCCcEEEEecc
Q 039504            2 CLHFTVLSEADEDQI-PE-VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGEN--PNLYLTNGDVVLCVLP   77 (240)
Q Consensus         2 ~~~~~~l~~~~~~~~-~~-~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~--~~~~~~~~d~~l~~~p   77 (240)
                      +.+|+|+++...... .. .+..|+|.+.|.|||||||+||||.+||+|+...+........  ........|++++++|
T Consensus       231 v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLP  310 (691)
T KOG1256|consen  231 VYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLP  310 (691)
T ss_pred             EEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCc
Confidence            357888888764332 23 4788999999999999999999999999999886543221111  1112334699999999


Q ss_pred             hHHhhhhHHHHHHHhhcCceEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCC--------------------
Q 039504           78 LFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV--------------------  137 (240)
Q Consensus        78 ~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--------------------  137 (240)
                      +.|++.... ....+..|+.+-+.+ .|+..+.+-+++.+||++.++|.+|+.+.+....                    
T Consensus       311 LAHi~er~~-~~~~~~~G~~IgF~~-gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k  388 (691)
T KOG1256|consen  311 LAHIFERVV-ELYTFYIGAKIGFAR-GDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYK  388 (691)
T ss_pred             HHHHHHHHH-HHhHhhcccEEEEec-CChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            999999984 445557888888776 6888888889999999999999999988651110                    


Q ss_pred             ------CCCCc-------------------cchhhhhccCCCCCHHHHHHHHHhCCCCcccccccccccccchhhccCCC
Q 039504          138 ------ADYDL-------------------SSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFA  192 (240)
Q Consensus       138 ------~~~~~-------------------~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~  192 (240)
                            .+...                   ..+|.+++|+.|+++++...++..+ +++|++.||+||+++.++..    
T Consensus       389 ~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~-g~~v~eGYGlTEts~g~~~~----  463 (691)
T KOG1256|consen  389 LEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAAL-GCRVLEGYGLTETSAGTTLT----  463 (691)
T ss_pred             HHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhc-CceeeecccccccCCceEec----
Confidence                  01110                   2588999999999999999999998 89999999999998544443    


Q ss_pred             CCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          193 KQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       193 ~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                       ...+...+++|.|+|+++++++|+++.+.-+.|..|||||+|+.||+
T Consensus       464 -~~~d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~  510 (691)
T KOG1256|consen  464 -LPGDNVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFM  510 (691)
T ss_pred             -cCCCCCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhce
Confidence             22233789999999999999999888888899999999999999985

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=1.2e-33  Score=238.15  Aligned_cols=219  Identities=37%  Similarity=0.648  Sum_probs=177.1

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ....++++++++|||||||.||+|.++|.++...........  .......++.+..+|++|.+++...++.++..|+++
T Consensus       179 ~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~  256 (546)
T PLN02330        179 EEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV--GPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKV  256 (546)
T ss_pred             ccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhcc--CccccCceEEEEecChHHHHHHHHHHHHHhhcCCEE
Confidence            345578999999999999999999999999887654322111  111234567889999999999877788899999999


Q ss_pred             EEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCcc--chhhhhccCCCCCHHHHHHHHHhCCCCcccccc
Q 039504           99 LLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLS--SIRVVLSGAAPLGKELEDALRSRVPQAILGQGY  176 (240)
Q Consensus        99 v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~--~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  176 (240)
                      ++.+++++..+++.++++++|++.++|+++..+.+........+.  ++|.++++|+++++++++++.+.|+++++++.|
T Consensus       257 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~Y  336 (546)
T PLN02330        257 VVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAY  336 (546)
T ss_pred             EEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecc
Confidence            999999999999999999999999999999999886544443343  478899999999999999999999889999999


Q ss_pred             cccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          177 GMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       177 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      |+||++.+...+.............++|+|.|+++++|+|+++++++|.|+.|||+|+|+.++
T Consensus       337 G~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~  399 (546)
T PLN02330        337 GLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVM  399 (546)
T ss_pred             cccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCceEEEEecchhh
Confidence            999997554332111111112334689999999999999988899999999999999999875

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=1.4e-34  Score=239.16  Aligned_cols=198  Identities=39%  Similarity=0.527  Sum_probs=164.7

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCcc-ccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLY-LTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~-~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      ....++|++.|+|||||||.||||.+||+|+.+++..+..    ... ++++|++++++|+.|++.........+..|.+
T Consensus       186 ~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~----~~~~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~  261 (613)
T COG1022         186 APPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDE----VLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVT  261 (613)
T ss_pred             CCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHh----hCCCCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceE
Confidence            4577999999999999999999999999999999988877    343 78999999999999999987434444444444


Q ss_pred             EEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCC----C------------------------C----------
Q 039504           98 VLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV----A------------------------D----------  139 (240)
Q Consensus        98 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~----~------------------------~----------  139 (240)
                      ...  ..+++.+++-+++++||+++++|.+|+.+.+....    .                        +          
T Consensus       262 ~~~--~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~  339 (613)
T COG1022         262 VLF--KEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVA  339 (613)
T ss_pred             EEe--cCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhh
Confidence            443  56899999999999999999999999988641100    0                        0          


Q ss_pred             ---------CCc-cchhhhhccCCCCCHHHHHHHHHhCCCCcccccccccccccchhhccCCCCCCCCCCCCccccccCC
Q 039504          140 ---------YDL-SSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRN  209 (240)
Q Consensus       140 ---------~~~-~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  209 (240)
                               ..+ .++|.+++||.++++++...++..  ++++.+.||+||++++.+.+     .+.+...+++|+|+|+
T Consensus       340 d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYGlTEts~~~~v~-----~~~~~~~gtvG~p~p~  412 (613)
T COG1022         340 DRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL--GIPILEGYGLTETSAVVSVN-----PPDRFVLGTVGKPLPG  412 (613)
T ss_pred             hHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEecccccccceEEc-----cccCcccCCcCCcCCC
Confidence                     001 267889999999999999999998  79999999999999888776     4456778999999999


Q ss_pred             ceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          210 AELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       210 ~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ++++|.| +          |||+||||.||+
T Consensus       413 ~evKI~d-~----------GEilVRG~~Vm~  432 (613)
T COG1022         413 IEVKIAD-D----------GEILVRGPNVMK  432 (613)
T ss_pred             ceEEEcc-C----------ceEEEecchhcc
Confidence            9999998 4          999999999985

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=2.5e-34  Score=246.52  Aligned_cols=225  Identities=31%  Similarity=0.411  Sum_probs=175.9

Q ss_pred             chhhHhhcCCCC-CCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhh
Q 039504            4 HFTVLSEADEDQ-IPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIY   82 (240)
Q Consensus         4 ~~~~l~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~   82 (240)
                      +|+++++..... .......++|+++|+|||||||.||+|.++|+++...+.....    .+++.++|++++.+|++|.+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~----~~~~~~~d~~l~~lPl~h~~  275 (651)
T PLN02736        200 TYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSL----STKFYPSDVHISYLPLAHIY  275 (651)
T ss_pred             EHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHh----ccCCCCCCEEEEeCCHHHHH
Confidence            455555433221 2233457899999999999999999999999999888776655    44678899999999999999


Q ss_pred             hhHHHHHHHhhcCceEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCC--------------------------
Q 039504           83 SLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPM--------------------------  136 (240)
Q Consensus        83 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--------------------------  136 (240)
                      ++. ..+.++..|+++++.+. ++..+++.++++++|++.++|.+++.+.+...                          
T Consensus       276 ~~~-~~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (651)
T PLN02736        276 ERV-NQIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALE  353 (651)
T ss_pred             HHH-HHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            997 57788999999988764 88899999999999999999999988765310                          


Q ss_pred             ---CCCC------------Cc-cchhhhhccCCCCCHHHHHHHHHhCCCCcccccccccccccchhhccCCCCCCCCCCC
Q 039504          137 ---VADY------------DL-SSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKS  200 (240)
Q Consensus       137 ---~~~~------------~~-~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~  200 (240)
                         ....            .+ +++|.+++||+++++++.+++++.+ +.++++.||+||++..+...     .......
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~-----~~~~~~~  427 (651)
T PLN02736        354 NGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICF-GGRVLEGYGMTETSCVISGM-----DEGDNLS  427 (651)
T ss_pred             cCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHh-CCCeEEEechHHhchheecc-----CCCCCCC
Confidence               0000            01 3789999999999999999999988 78899999999997655433     1123456


Q ss_pred             CccccccCCceEEEeeCCCCCC---CCCCCCceEEEeCCCCCC
Q 039504          201 GSCGTVVRNAELKVIDPETGAS---LPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       201 ~~~G~~~~~~~v~i~d~~~~~~---~~~g~~Gel~v~~~~~~~  240 (240)
                      +++|+|.|+++++|+|.+++..   ..+++.|||+|+||++|+
T Consensus       428 ~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~  470 (651)
T PLN02736        428 GHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFK  470 (651)
T ss_pred             CccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCcccc
Confidence            7899999999999999543332   233457999999999874

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.6e-34  Score=238.19  Aligned_cols=209  Identities=21%  Similarity=0.346  Sum_probs=176.8

Q ss_pred             CCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEE
Q 039504           21 IEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLL  100 (240)
Q Consensus        21 ~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~  100 (240)
                      ..+++.++++|||||||.||+|.++|.++.........    ...+.++++++...|++|.+++. .++.++..|+++++
T Consensus       193 ~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~----~~~~~~~~~~l~~~p~~~~~g~~-~~~~~l~~g~~~~~  267 (537)
T PRK13382        193 PTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILD----RTPWRAEEPTVIVAPMFHAWGFS-QLVLAASLACTIVT  267 (537)
T ss_pred             CCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHH----hhCCCCCCeEEEecChHhhhHHH-HHHHHHhcCcEEEE
Confidence            34678999999999999999999999888776665544    33567889999999999999986 67888899999999


Q ss_pred             ccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCC--CCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccc
Q 039504          101 MQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV--ADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM  178 (240)
Q Consensus       101 ~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  178 (240)
                      ...++++.+++.++++++|++.++|++++.|.+....  ...+++++|.+++||+++++++++.+.+.+ +.++++.||+
T Consensus       268 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~  346 (537)
T PRK13382        268 RRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQF-GDVIYNNYNA  346 (537)
T ss_pred             CCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHc-CCcEEecccc
Confidence            8889999999999999999999999999999876432  223456899999999999999999999999 6789999999


Q ss_pred             cccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       179 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ||++.++..+..    ......+++|+|.+++.++|+| +++++++.|+.|||+|+||++++
T Consensus       347 TE~~~~~~~~~~----~~~~~~~~vG~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~  403 (537)
T PRK13382        347 TEAGMIATATPA----DLRAAPDTAGRPAEGTEIRILD-QDFREVPTGEVGTIFVRNDTQFD  403 (537)
T ss_pred             cccCcceecChh----HhccCCCCccccCcCcEEEEEC-CCCCCCCCCCeeEEEEEcCCccc
Confidence            999876544321    1123457899999999999999 56899999999999999998863

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-33  Score=236.84  Aligned_cols=215  Identities=31%  Similarity=0.471  Sum_probs=185.7

Q ss_pred             CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504           17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGA   96 (240)
Q Consensus        17 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~   96 (240)
                      ......++++++++|||||||.||++.++|.++.........    .+++.++|+++..+|++|..++...++.++..|+
T Consensus       164 ~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~  239 (523)
T PRK08316        164 PDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIV----AGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGA  239 (523)
T ss_pred             CccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHH----HhCCCCCceEEEccCCchhhhHHHHHHHHHhcCc
Confidence            344567789999999999999999999999999887665544    3467889999999999999988756777889999


Q ss_pred             eEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccc
Q 039504           97 GVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGY  176 (240)
Q Consensus        97 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  176 (240)
                      ++++.+..+++.+++.++++++|++.++|+++..+.+........++++|.+++||++++.++.+.+++.+++.++++.|
T Consensus       240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~Y  319 (523)
T PRK08316        240 TNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCY  319 (523)
T ss_pred             eEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeee
Confidence            99999889999999999999999999999999999988766666778999999999999999999999999888999999


Q ss_pred             cccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          177 GMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       177 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      |+||++.+...+..   .......+++|+|.++++++|+| +++++++.|+.|||+|+|+.++
T Consensus       320 G~tE~~~~~~~~~~---~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gei~v~~~~~~  378 (523)
T PRK08316        320 GQTEIAPLATVLGP---EEHLRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHRSPQLM  378 (523)
T ss_pred             cccccCccccccCc---cccccccCCcccCCCCcEEEEEc-CCCCCCCCCCcceEEEECCchh
Confidence            99999876554321   11223457899999999999999 6689999999999999998765

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.7e-33  Score=235.89  Aligned_cols=229  Identities=34%  Similarity=0.517  Sum_probs=191.5

Q ss_pred             chhhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhh
Q 039504            4 HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS   83 (240)
Q Consensus         4 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g   83 (240)
                      ++++++.............++++++++|||||||.||++.++|.++.........    .+++.++|+++..+|++|.++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~  222 (521)
T PRK06187        147 EYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCA----WLKLSRDDVYLVIVPMFHVHA  222 (521)
T ss_pred             cHHHHhhcCCccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHH----hhCCCCCCEEEEeCCchHHhh
Confidence            4556655555444455667889999999999999999999999998877766555    456889999999999999988


Q ss_pred             hHHHHHHHhhcCceEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHH
Q 039504           84 LNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDAL  163 (240)
Q Consensus        84 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~  163 (240)
                      +. ..+.++..|+++++.+..++..+++.+++++++++.++|++++.+.+........++++|.++++|++++.++++.+
T Consensus       223 ~~-~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~  301 (521)
T PRK06187        223 WG-LPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREF  301 (521)
T ss_pred             HH-HHHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHH
Confidence            87 44559999999999988899999999999999999999999999999887767788899999999999999999999


Q ss_pred             HHhCCCCcccccccccccccchhhccCCCCC-CCCCCCCccccccCCceEEEeeCCCCCCCCC--CCCceEEEeCCCCC
Q 039504          164 RSRVPQAILGQGYGMTEAGPVLSMCLGFAKQ-PFPTKSGSCGTVVRNAELKVIDPETGASLPH--NQPGEICIRGPQIM  239 (240)
Q Consensus       164 ~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~--g~~Gel~v~~~~~~  239 (240)
                      .+.| ++++++.||+||++.+...+...... .......++|+|.+++.++|+| +++++++.  |+.|||+|+|+.++
T Consensus       302 ~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~  378 (521)
T PRK06187        302 KEKF-GIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLM  378 (521)
T ss_pred             HHHh-CcchheeeccCccCcccccCCcccccccccccCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchh
Confidence            9999 89999999999998765543211000 0012567899999999999999 55789998  99999999998764

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.5e-33  Score=238.16  Aligned_cols=214  Identities=29%  Similarity=0.536  Sum_probs=183.4

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ...++++++++|||||||.||+|.++|.++.........    .++++++|+++..+|++|..++...++.++..|++++
T Consensus       195 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~  270 (559)
T PRK08315        195 TLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGE----AMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMV  270 (559)
T ss_pred             cCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHH----hcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEE
Confidence            456788999999999999999999999999887776655    4568899999999999999998877889999999998


Q ss_pred             E-ccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccc
Q 039504          100 L-MQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM  178 (240)
Q Consensus       100 ~-~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  178 (240)
                      + ...+++..+++.++++++|+++++|+++..+..........++++|.++++|++++.++.+.+.+.++..++++.||+
T Consensus       271 ~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~  350 (559)
T PRK08315        271 YPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGM  350 (559)
T ss_pred             EecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcc
Confidence            4 456899999999999999999999999998887766555677899999999999999999999999966679999999


Q ss_pred             cccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       179 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      ||++.++..+...  ........++|+|.|++.++|+|++++++++.|+.|||+|+|+.++
T Consensus       351 tE~~~~~~~~~~~--~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~  409 (559)
T PRK08315        351 TETSPVSTQTRTD--DPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVM  409 (559)
T ss_pred             cccccceeecCcc--cchhhccCCCCccCCCcEEEEEcCccCCcCCCCCceEEEEECchhh
Confidence            9998765543211  1112346789999999999999987799999999999999998775

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.8e-34  Score=243.23  Aligned_cols=209  Identities=21%  Similarity=0.327  Sum_probs=168.8

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      ...++++|+++|+|||||||.||+|+++|.+.+.........   ......+|++++..|++|+.+.. .++.++..|++
T Consensus       248 ~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~---~~~~~~~d~~~~~~~~~w~~~~~-~~~~~l~~G~t  323 (647)
T PTZ00237        248 YVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRS---IIEKDIPTVVFSHSSIGWVSFHG-FLYGSLSLGNT  323 (647)
T ss_pred             ceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHH---hcCCCCCcEEEEcCCCceEeeHH-HHHHHHhCCcE
Confidence            345678999999999999999999999999843333222111   23457789999999999986654 67889999999


Q ss_pred             EEEccC--CC----HHHHHHHHHhccceeeeechHHHHHHHhCCCC-----CCCCccchhhhhccCCCCCHHHHHHHHHh
Q 039504           98 VLLMQK--FE----IGALLELIQRHRVSVAAVVPPLVLALAKNPMV-----ADYDLSSIRVVLSGAAPLGKELEDALRSR  166 (240)
Q Consensus        98 ~v~~~~--~~----~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~-----~~~~~~~lr~v~~~G~~~~~~~~~~~~~~  166 (240)
                      +++.++  +.    +..+++.++++++|++.++|++++.|.+....     ...+++++|.++++|+++++++.+++++.
T Consensus       324 ~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~  403 (647)
T PTZ00237        324 FVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENK  403 (647)
T ss_pred             EEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCcchheEEEecCccCCHHHHHHHHHh
Confidence            998753  22    68899999999999999999999999875322     23467899999999999999999999999


Q ss_pred             CCCCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCC
Q 039504          167 VPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP  236 (240)
Q Consensus       167 ~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~  236 (240)
                      + ++++++.||+||++..+....    .......+++|+|.|+++++|+| +++++++.|+.|||+|++|
T Consensus       404 ~-g~~i~~~yG~TE~~~~~~~~~----~~~~~~~~s~G~p~~g~~~~i~d-~~g~~~~~ge~GEl~v~~p  467 (647)
T PTZ00237        404 L-KIKSSRGYGQTEIGITYLYCY----GHINIPYNATGVPSIFIKPSILS-EDGKELNVNEIGEVAFKLP  467 (647)
T ss_pred             c-CCCEEeeechHHhChhhhccC----CCCCCCCCCCccCcCCceEEEEC-CCCCCCCCCCceEEEEecc
Confidence            8 789999999999986543321    11122347899999999999999 5799999999999999986

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.3e-33  Score=233.43  Aligned_cols=204  Identities=24%  Similarity=0.375  Sum_probs=174.3

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .++++++++|||||||.||+|.++|.++.........    .+++.++|+++...|++|..++. .++.++..|+++++.
T Consensus       141 ~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~----~~~~~~~d~~~~~~~l~~~~~l~-~~~~~l~~g~~~~~~  215 (487)
T PRK07638        141 VQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVH----DFHMKREDSVLIAGTLVHSLFLY-GAISTLYVGQTVHLM  215 (487)
T ss_pred             CCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHH----hcCcCCCCEEEEeecchHHHHHH-HHHHHHccCcEEEEc
Confidence            3467899999999999999999999999887766554    44678899999999999987765 678899999999999


Q ss_pred             cCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccccc
Q 039504          102 QKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA  181 (240)
Q Consensus       102 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~  181 (240)
                      +.+++.++++.++++++|++.++|++++.|.+...    ...+.+.++++|++++.++.+++.+.|++.++++.||+||+
T Consensus       216 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~  291 (487)
T PRK07638        216 RKFIPNQVLDKLETENISVMYTVPTMLESLYKENR----VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASEL  291 (487)
T ss_pred             CCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC----cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCcc
Confidence            99999999999999999999999999999988732    23355667789999999999999999988999999999999


Q ss_pred             ccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          182 GPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      +.++..+.    ........++|+|.+++.++|+| +++++++.|+.|||+|+|+.++
T Consensus       292 ~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~Gel~v~~~~~~  344 (487)
T PRK07638        292 SFVTALVD----EESERRPNSVGRPFHNVQVRICN-EAGEEVQKGEIGTVYVKSPQFF  344 (487)
T ss_pred             CceEEecc----cccCCCCCCCCcccCCcEEEEEC-CCCCCCCCCCCeEEEEecccce
Confidence            86654431    12234567899999999999999 6699999999999999999875

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=5.8e-34  Score=244.16  Aligned_cols=230  Identities=26%  Similarity=0.390  Sum_probs=169.3

Q ss_pred             chhhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCC-CccccCCcEEEEecchHHhh
Q 039504            4 HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENP-NLYLTNGDVVLCVLPLFHIY   82 (240)
Q Consensus         4 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~-~~~~~~~d~~l~~~p~~~~~   82 (240)
                      +|+++.+............++|+++|+|||||||.||||.++|.++..........+.. ...+.++|++++.+|++|++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~  279 (660)
T PLN02861        200 SWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVY  279 (660)
T ss_pred             EHHHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHH
Confidence            45555543322222334568999999999999999999999999998876554332110 01246789999999999999


Q ss_pred             hhHHHHHHHhhcCceEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCC---------------------------
Q 039504           83 SLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNP---------------------------  135 (240)
Q Consensus        83 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~---------------------------  135 (240)
                      +.. ..+.+++.|+++++. ++++..+++.++++++|++.++|.+++.+....                           
T Consensus       280 ~~~-~~~~~l~~G~~v~~~-~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~  357 (660)
T PLN02861        280 DQV-IETYCISKGASIGFW-QGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLR  357 (660)
T ss_pred             HHH-HHHHHHHhCCEEEEe-CCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Confidence            987 355678999998887 468999999999999999999999999886410                           


Q ss_pred             ----------CCCCC-------Cc-cchhhhhccCCCCCHHHHHHHHHhCCCCcccccccccccccchhhccCCCCCCCC
Q 039504          136 ----------MVADY-------DL-SSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFP  197 (240)
Q Consensus       136 ----------~~~~~-------~~-~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~  197 (240)
                                .....       .+ .++|.+++||+++++++.+ +.+.++...+++.||+||++..+....    ....
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~~~YG~TE~~~~~~~~~----~~~~  432 (660)
T PLN02861        358 KGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLRVTSCSVLSQGYGLTESCGGCFTSI----ANVF  432 (660)
T ss_pred             cCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHHHHcCCCeeEecchhhhhhceeecc----cccC
Confidence                      00000       01 3689999999999999855 556664457999999999875543321    1112


Q ss_pred             CCCCccccccCCceEEEee-CCCC-CCCCCCCCceEEEeCCCCCC
Q 039504          198 TKSGSCGTVVRNAELKVID-PETG-ASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       198 ~~~~~~G~~~~~~~v~i~d-~~~~-~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ...+++|+|.|+++++|+| ++.+ ..++.++.|||+|+||++|+
T Consensus       433 ~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~  477 (660)
T PLN02861        433 SMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFS  477 (660)
T ss_pred             CCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccc
Confidence            2457899999999999998 3434 44566778999999999874

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.7e-33  Score=232.68  Aligned_cols=210  Identities=32%  Similarity=0.488  Sum_probs=179.1

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ...++++++++|||||||.||++.++|.++.........    .+++.++|+++..+|++|.+++....+.++..|++++
T Consensus       145 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~  220 (496)
T PRK06839        145 EKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTF----AIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVII  220 (496)
T ss_pred             CCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHH----HcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEE
Confidence            455688999999999999999999999998665544333    3457889999999999999998867788999999999


Q ss_pred             EccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccc
Q 039504          100 LMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT  179 (240)
Q Consensus       100 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  179 (240)
                      +.+.++++.+++.++++++|++.++|++++.+.+........++++|.+++||+++++++.+.+++.  ++++++.||+|
T Consensus       221 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~~~~YG~t  298 (496)
T PRK06839        221 VPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR--GFLFGQGFGMT  298 (496)
T ss_pred             EccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh--CCeeEeeccCC
Confidence            9888999999999999999999999999999998876666678899999999999999999999886  78999999999


Q ss_pred             ccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          180 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       180 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      |++..+....   ........+++|+|.++++++|+|+ +++.++.|+.|||+|+|+.++
T Consensus       299 E~~~~~~~~~---~~~~~~~~~~~G~p~~~~~~~i~d~-~~~~~~~g~~Gel~v~~~~~~  354 (496)
T PRK06839        299 ETSPTVFMLS---EEDARRKVGSIGKPVLFCDYELIDE-NKNKVEVGEVGELLIRGPNVM  354 (496)
T ss_pred             CCCcceEecc---cccccccCCCCcccCCCceEEEECC-CcCCCCCCCceEEEEECCCcc
Confidence            9986543321   1122344678999999999999995 467799999999999999875

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.8e-33  Score=232.05  Aligned_cols=212  Identities=29%  Similarity=0.431  Sum_probs=181.0

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ...++++++++|||||||.||+|.++|.++.........    .+++..+++++...|++|.+++....+..+..|++++
T Consensus       145 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~  220 (497)
T PRK06145        145 AVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVI----ALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLR  220 (497)
T ss_pred             CCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHH----hhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEE
Confidence            456789999999999999999999999998765544433    3467889999999999999888756677889999999


Q ss_pred             EccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccc
Q 039504          100 LMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT  179 (240)
Q Consensus       100 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  179 (240)
                      +.+.+++..+++.++++++|++.++|++++.++.........++++|.+++||++++.++.+++.+.|++.++++.||+|
T Consensus       221 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~t  300 (497)
T PRK06145        221 IHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLT  300 (497)
T ss_pred             ECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCc
Confidence            98889999999999999999999999999999987666556678899999999999999999999999888999999999


Q ss_pred             ccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          180 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       180 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      |++..+.....   .......+++|+|.++++++++| +++++++.|+.|||+|+|++++
T Consensus       301 E~~~~~~~~~~---~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~  356 (497)
T PRK06145        301 ETCSGDTLMEA---GREIEKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGPKVT  356 (497)
T ss_pred             ccCCcceeccC---ccccccCCCcccCCCCceEEEEC-CCCCCCCCCCceEEEEECcchh
Confidence            99875443211   11123456899999999999999 5688999999999999999876

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=2.7e-33  Score=235.62  Aligned_cols=211  Identities=27%  Similarity=0.395  Sum_probs=181.0

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ...++++++++|||||||.||++.++|+++...+.....    .+++.++|+++..+|++|..++...++.++..|.+++
T Consensus       191 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~  266 (538)
T TIGR03208       191 RPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAE----RLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAV  266 (538)
T ss_pred             CCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHh----hcCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEE
Confidence            356789999999999999999999999999888776655    3457889999999999999888767889999999999


Q ss_pred             EccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccc
Q 039504          100 LMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT  179 (240)
Q Consensus       100 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  179 (240)
                      +.+.+++..+++.+++++++++..+|+++..+..........++++|.++++|+++++++.+++.+.+ ++++++.||+|
T Consensus       267 ~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~t  345 (538)
T TIGR03208       267 LQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELL-GALIVSAWGMT  345 (538)
T ss_pred             ecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHHHHHHc-CCeEEeeeccC
Confidence            98889999999999999999999999999998876554455678999999999999999999999988 78999999999


Q ss_pred             ccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          180 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       180 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      |++.+......   ........++|+|.|+++++|+| +++++++.|+.|||+|+|+.++
T Consensus       346 E~~~~~~~~~~---~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~~~g~~Gel~v~g~~~~  401 (538)
T TIGR03208       346 ENGAVTVTEPD---DALEKASTTDGRPLPGVEVKVID-ANGAKLSQGETGRLLVRGCSNF  401 (538)
T ss_pred             cCCCccccCcc---cchhhccCcccccCCCCEEEEEC-CCCCCCcCCCCcEEEEecCccc
Confidence            99866543311   11122345789999999999999 6689999999999999999875

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.8e-33  Score=236.36  Aligned_cols=212  Identities=31%  Similarity=0.512  Sum_probs=180.1

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccc-cCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYL-TNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ...++++++++|||||||.||+|.++|.++...........   .++ ..+++++..+|++|.+|+...+..++..|+++
T Consensus       215 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~  291 (573)
T PRK05605        215 RPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWV---PGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGEL  291 (573)
T ss_pred             CCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhc---cccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEE
Confidence            45678999999999999999999999999877665433211   112 34689999999999999876677889999999


Q ss_pred             EEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccc
Q 039504           99 LLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM  178 (240)
Q Consensus        99 v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  178 (240)
                      ++.+..+++.+++.++++++|++.++|++++.+.+........++++|.+++||+++++++.+++.+.+ +.++++.||+
T Consensus       292 ~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~-~~~i~~~YG~  370 (573)
T PRK05605        292 VLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGAMALPVSTVELWEKLT-GGLLVEGYGL  370 (573)
T ss_pred             EEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEECCCcCCHHHHHHHHHHh-CCCeeccccc
Confidence            998889999999999999999999999999999988777777788999999999999999999999987 7889999999


Q ss_pred             cccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCC-CCCCCCCCCceEEEeCCCCC
Q 039504          179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPET-GASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       179 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~-~~~~~~g~~Gel~v~~~~~~  239 (240)
                      ||++.++..+..    ......+++|+|.|++.++|+|+++ +++++.|+.|||+|+|+.++
T Consensus       371 TE~~~~~~~~~~----~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~~~~~  428 (573)
T PRK05605        371 TETSPIIVGNPM----SDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVF  428 (573)
T ss_pred             chhchhhhcCCc----ccCCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEEecCchh
Confidence            999876654321    1223457899999999999999776 68999999999999998765

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=4.3e-33  Score=232.69  Aligned_cols=210  Identities=33%  Similarity=0.507  Sum_probs=181.1

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      .....++++++++|||||||.||++.++|.++.........    .+++.++|+++..+|++|..++....+.++..|++
T Consensus       150 ~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~  225 (504)
T PRK07514        150 TVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVD----YWRFTPDDVLIHALPIFHTHGLFVATNVALLAGAS  225 (504)
T ss_pred             cccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHH----HhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcE
Confidence            34456789999999999999999999999999887765544    34578899999999999999987677899999999


Q ss_pred             EEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccc
Q 039504           98 VLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG  177 (240)
Q Consensus        98 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  177 (240)
                      +++.+..++..+++.+  .++|++.++|+++..+..........++++|.++.||+++++++.+.+.+.+ +.++++.||
T Consensus       226 ~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG  302 (504)
T PRK07514        226 MIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERT-GHAILERYG  302 (504)
T ss_pred             EEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHh-CCcceeecc
Confidence            9999889999999999  3799999999999999887665566778999999999999999999999998 788999999


Q ss_pred             ccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          178 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       178 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      +||++......     ........++|+|+++++++|+||+++++++.|+.|||+|+|+.++
T Consensus       303 ~tE~~~~~~~~-----~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~  359 (504)
T PRK07514        303 MTETNMNTSNP-----YDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVF  359 (504)
T ss_pred             cccccccccCC-----ccccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCcc
Confidence            99987554321     1122345688999999999999999999999999999999999875

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=2.9e-33  Score=236.49  Aligned_cols=210  Identities=32%  Similarity=0.440  Sum_probs=172.6

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ...++++++++|||||||.||+|.++|.++.........    .+++.++|+++...|++|..++. .++.++..|++++
T Consensus       168 ~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~~~v  242 (563)
T PLN02860        168 AWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIA----IVGYGEDDVYLHTAPLCHIGGLS-SALAMLMVGACHV  242 (563)
T ss_pred             CCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHh----hcCCCCCCEEEEecCchhhccHH-HHHHHHHcCceEE
Confidence            346789999999999999999999999998776655443    44678899999999999999986 5788999999999


Q ss_pred             EccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCC--CCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccc
Q 039504          100 LMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVA--DYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG  177 (240)
Q Consensus       100 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~--~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  177 (240)
                      +.+++++..+++.++++++|++.++|+++..|.+.....  ...++++|.+++||+++++++.+.+++.|++.++++.||
T Consensus       243 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG  322 (563)
T PLN02860        243 LLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYG  322 (563)
T ss_pred             ecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCC
Confidence            998999999999999999999999999999998764322  245678999999999999999999999998899999999


Q ss_pred             ccccccchhhccCCCCC-----------------C-CCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          178 MTEAGPVLSMCLGFAKQ-----------------P-FPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       178 ~tE~~~~~~~~~~~~~~-----------------~-~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      +||++..+.........                 . ......++|+|.|+++++|+|++      .|+.|||+|+||.++
T Consensus       323 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~------~g~~Gel~v~g~~~~  396 (563)
T PLN02860        323 MTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE------SSRVGRILTRGPHVM  396 (563)
T ss_pred             ccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC------CCceeEEEEecCccc
Confidence            99987554332111100                 0 01112368999999999999843      688999999999876


Q ss_pred             C
Q 039504          240 K  240 (240)
Q Consensus       240 ~  240 (240)
                      +
T Consensus       397 ~  397 (563)
T PLN02860        397 L  397 (563)
T ss_pred             c
Confidence            3

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=6.3e-33  Score=232.85  Aligned_cols=211  Identities=28%  Similarity=0.417  Sum_probs=179.1

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHH-HHHHHhhcCce
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNS-VLLCSLRAGAG   97 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~l~~G~~   97 (240)
                      ....++|+++++|||||||.||+|.++|.++.........    .+.+.++|+++..+|++|.+++.. .++.++..|++
T Consensus       178 ~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~----~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~  253 (527)
T TIGR02275       178 PPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVE----ICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGC  253 (527)
T ss_pred             CCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHh----hcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCe
Confidence            4567889999999999999999999999999887766554    345788999999999999988763 36788899999


Q ss_pred             EEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccc
Q 039504           98 VLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG  177 (240)
Q Consensus        98 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  177 (240)
                      +++.+.+++..+++.+++++++++.++|++++.+.+........++++|.+++||++++.++.+++.+.+ ++++++.||
T Consensus       254 ~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG  332 (527)
T TIGR02275       254 VVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVF-GCQLQQVFG  332 (527)
T ss_pred             EEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHh-CCeEEeeec
Confidence            9998889999999999999999999999999999888776667788999999999999999999999998 789999999


Q ss_pred             ccccccchhhccCCCCCCCCCCCCcccccc-CCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          178 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVV-RNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       178 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      +||+.......    .........++|+|+ ++..++|+| +++++++.|+.|||+|+|+.++
T Consensus       333 ~tE~~~~~~~~----~~~~~~~~~~~G~~~~~~~~v~i~d-~~g~~~~~g~~Gei~v~g~~~~  390 (527)
T TIGR02275       333 MAEGLVNYTRL----DDPAEIIFTTQGRPMSPDDEVRVVD-DHGNPVAPGETGMLLTRGPYTF  390 (527)
T ss_pred             cCccCccccCC----CCccccccccCCCCCCCCceEEEEC-CCCCCCCCCCceEEEecCCccc
Confidence            99965322111    111122346789999 488999999 6689999999999999999876

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.1e-33  Score=239.15  Aligned_cols=212  Identities=22%  Similarity=0.344  Sum_probs=173.3

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      .++++|+++++|||||||.||+|.++|.++..........   .++++++|++++..|+.|+.+....++.++..|++++
T Consensus       229 ~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v  305 (629)
T PRK10524        229 WLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDT---IFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATI  305 (629)
T ss_pred             eeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHH---hcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEE
Confidence            3567899999999999999999999999875544332221   3467889999999999999887667889999999998


Q ss_pred             Ecc----CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCC--CCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccc
Q 039504          100 LMQ----KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV--ADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILG  173 (240)
Q Consensus       100 ~~~----~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~  173 (240)
                      +.+    ..++..++++++++++|++.++|++++.|.+....  ...+++++|.++++|+++++++.+++.+.+ +.+++
T Consensus       306 ~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~-~~~v~  384 (629)
T PRK10524        306 MYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEAL-GVPVI  384 (629)
T ss_pred             EECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHHHHHHHHhc-CCCeE
Confidence            875    35789999999999999999999999998875432  334678999999999999999999999988 78999


Q ss_pred             ccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCC
Q 039504          174 QGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP  236 (240)
Q Consensus       174 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~  236 (240)
                      +.||+||++..+..... .........+++|+|+|+++++|+|++++++++.|+.|||+|+||
T Consensus       385 ~~YG~TE~~~~~~~~~~-~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp  446 (629)
T PRK10524        385 DNYWQTETGWPILAIAR-GVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGP  446 (629)
T ss_pred             eccccccccchhhcCCC-CcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCC
Confidence            99999999843322211 111123346789999999999999965899999999999999998

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=4.3e-33  Score=240.19  Aligned_cols=206  Identities=23%  Similarity=0.228  Sum_probs=171.1

Q ss_pred             CCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEE
Q 039504           21 IEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLL  100 (240)
Q Consensus        21 ~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~  100 (240)
                      ..++++++|+|||||||.||+|+++|.+++........    .++++++|+++..+++.|+.+.+ .++.++..|+++++
T Consensus       353 ~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~----~~~l~~~d~~~~~~~l~w~~g~~-~v~~~L~~Gat~vl  427 (728)
T PLN03052        353 QPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWA----HLDIRKGDIVCWPTNLGWMMGPW-LVYASLLNGATLAL  427 (728)
T ss_pred             cCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHH----hcCCCCCcEEEECCCcHHHhHHH-HHHHHHHhCCEEEE
Confidence            45689999999999999999999999987665544333    24678899999999999999886 67899999999998


Q ss_pred             ccC-CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccc
Q 039504          101 MQK-FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT  179 (240)
Q Consensus       101 ~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  179 (240)
                      .++ .++..++++++++++|++.++|++++.|.+.......+++++|.++++|++++++...++.+.++..++++.||+|
T Consensus       428 ~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~T  507 (728)
T PLN03052        428 YNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGT  507 (728)
T ss_pred             eCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccCh
Confidence            864 5667899999999999999999999999887544566788999999999999999999888877446789999999


Q ss_pred             ccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCC--CceEEEeCC
Q 039504          180 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQ--PGEICIRGP  236 (240)
Q Consensus       180 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~--~Gel~v~~~  236 (240)
                      |+++.+....    .......+++|.|.++++++|+| ++|++++.|+  .|||+|+++
T Consensus       508 E~~~~~~~~~----~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~  561 (728)
T PLN03052        508 ELGGGFVTGS----LLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPL  561 (728)
T ss_pred             hhCcccccCC----CCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCC
Confidence            9976443321    11123457899999999999999 7799999985  599999864

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.2e-33  Score=234.62  Aligned_cols=227  Identities=31%  Similarity=0.458  Sum_probs=183.3

Q ss_pred             cchhhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccc-cCCcEEEEecchHHh
Q 039504            3 LHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYL-TNGDVVLCVLPLFHI   81 (240)
Q Consensus         3 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~   81 (240)
                      .++++++..............+++++++|||||||.||++.++|.++..........    +++ ..+++++...|++|.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~  228 (542)
T PRK07786        153 LGYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRT----NGADINSDVGFVGVPLFHI  228 (542)
T ss_pred             cCHHHHhhccCCCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHh----cCCCCCCceEEEecchHHH
Confidence            345555544333333344566789999999999999999999999998777655442    233 567899999999999


Q ss_pred             hhhHHHHHHHhhcCceEEEcc--CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHH
Q 039504           82 YSLNSVLLCSLRAGAGVLLMQ--KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKEL  159 (240)
Q Consensus        82 ~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~  159 (240)
                      +|+. .++.++..|+++++.+  .+++..+++.++++++|++.++|++++.+.......... .++|.+++||+++++++
T Consensus       229 ~g~~-~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-~~lr~i~~gg~~~~~~~  306 (542)
T PRK07786        229 AGIG-SMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRD-LALRVLSWGAAPASDTL  306 (542)
T ss_pred             HHHH-HHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccC-cceEEEEECCCCCCHHH
Confidence            8886 6788999999998864  579999999999999999999999999998875543333 36899999999999999


Q ss_pred             HHHHHHhCCCCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          160 EDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       160 ~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      ++.+++.|++.++++.||+||++.+...+.   .........++|+|++++.++|+| +++++++.|+.|||+|+|+.++
T Consensus       307 ~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~  382 (542)
T PRK07786        307 LRQMAATFPEAQILAAFGQTEMSPVTCMLL---GEDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLM  382 (542)
T ss_pred             HHHHHHHcCCCeEEeeecccccccceEecC---cccccccCCCccccCCCceEEEEC-CCCCCCcCCCceEEEEEChhhh
Confidence            999999998899999999999986654331   112223457899999999999999 6689999999999999999875

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=8.2e-33  Score=233.17  Aligned_cols=212  Identities=30%  Similarity=0.429  Sum_probs=179.9

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ....++|+++++|||||||.||++.++|.++......+..    .+++.++|+++..+|++|.+++...++.++..|+++
T Consensus       182 ~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~  257 (547)
T PRK06087        182 ITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCA----RLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARS  257 (547)
T ss_pred             CCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHH----hcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEE
Confidence            3456789999999999999999999999999877665544    446788999999999999999887788899999999


Q ss_pred             EEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccc
Q 039504           99 LLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM  178 (240)
Q Consensus        99 v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  178 (240)
                      ++.+.+++..+++.+++++++++.++|+.+..+++........++++|.+++||+++++++.+.+.+.  ++++++.||+
T Consensus       258 ~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~--~~~l~~~YG~  335 (547)
T PRK06087        258 VLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR--GIKLLSVYGS  335 (547)
T ss_pred             EecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc--CCcEEEEecc
Confidence            99999999999999999999999999888888877766556677899999999999999999988774  8899999999


Q ss_pred             cccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       179 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ||++.+.....   .........++|+|++++.++|+| +++++++.|+.|||+|+|+.+++
T Consensus       336 TE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~  393 (547)
T PRK06087        336 TESSPHAVVNL---DDPLSRFMHTDGYAAAGVEIKVVD-EARKTLPPGCEGEEASRGPNVFM  393 (547)
T ss_pred             cccCCccccCC---CcchhhcCCcCCccCCCceEEEEc-CCCCCCcCCCcceEEEecccccc
Confidence            99987654431   111122345789999999999999 67899999999999999998763

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.9e-33  Score=274.19  Aligned_cols=215  Identities=20%  Similarity=0.303  Sum_probs=184.3

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      .....|+|+++|+|||||||.||||.++|+++.+.+.....    .+++.++|+++..+|+.|..+.. .++.++..|++
T Consensus      3231 ~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~fd~~~~-~~~~~L~~G~~ 3305 (3956)
T PRK12467       3231 STRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAE----AYELDANDRVLLFMSFSFDGAQE-RFLWTLICGGC 3305 (3956)
T ss_pred             cccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHH----hcCCCcCCEEEEecCccHhHHHH-HHHHHHhCCCE
Confidence            34567899999999999999999999999999998877766    45689999999999999998876 68899999999


Q ss_pred             EEEccC--CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccc
Q 039504           98 VLLMQK--FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG  175 (240)
Q Consensus        98 ~v~~~~--~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  175 (240)
                      +++.+.  +++..+++.++++++|++.++|++++.+.+...  ...++++|.+++|||++++++.+++.+.+++++++|.
T Consensus      3306 l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~ 3383 (3956)
T PRK12467       3306 LVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG--GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNG 3383 (3956)
T ss_pred             EEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc--ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeC
Confidence            998875  789999999999999999999999999987543  3356789999999999999999999999888899999


Q ss_pred             ccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          176 YGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       176 yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ||+||++..+................++|+|++++++.|+| ++++++|.|++|||+|+|+.|++
T Consensus      3384 YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~vp~G~~GEL~i~G~~v~~ 3447 (3956)
T PRK12467       3384 YGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLD-GQLNPVPVGVAGELYIGGVGLAR 3447 (3956)
T ss_pred             cccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEEC-CCCCCCCCCCCceEEEcchhhhh
Confidence            99999987655432211111223446899999999999999 67999999999999999999874

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=3.5e-33  Score=235.63  Aligned_cols=210  Identities=27%  Similarity=0.397  Sum_probs=169.7

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ....++++++++|||||||.||+|.++|.++.........    .+++.++|+.+..+|++|.+++        ..|.++
T Consensus       169 ~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~~pl~~~~~~--------~~g~~~  236 (552)
T PRK09274        169 ADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALRE----DYGIEPGEIDLPTFPLFALFGP--------ALGMTS  236 (552)
T ss_pred             CCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHH----HhCCCCCceeeeccCHHHhhhh--------hhCCeE
Confidence            3456789999999999999999999999999887766655    4467889999999998876443        346666


Q ss_pred             EEcc-------CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCC-CC
Q 039504           99 LLMQ-------KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVP-QA  170 (240)
Q Consensus        99 v~~~-------~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~-~~  170 (240)
                      ++..       .+++..+++.++++++|+++++|++++.|.+.......+++++|.+++||+++++++.+++++.|+ ++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~  316 (552)
T PRK09274        237 VIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDA  316 (552)
T ss_pred             EecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHHHHHHHHcCCCc
Confidence            6643       468999999999999999999999999999876656667889999999999999999999999996 37


Q ss_pred             cccccccccccccchhhccCCCC----CC-CCCCCCccccccCCceEEEeeCC--------CCCCCCCCCCceEEEeCCC
Q 039504          171 ILGQGYGMTEAGPVLSMCLGFAK----QP-FPTKSGSCGTVVRNAELKVIDPE--------TGASLPHNQPGEICIRGPQ  237 (240)
Q Consensus       171 ~i~~~yG~tE~~~~~~~~~~~~~----~~-~~~~~~~~G~~~~~~~v~i~d~~--------~~~~~~~g~~Gel~v~~~~  237 (240)
                      ++++.||+||++.++........    .. ......++|+|+|+++++|+|++        ++++++.|+.|||+|+||+
T Consensus       317 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~  396 (552)
T PRK09274        317 EILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPM  396 (552)
T ss_pred             eEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEEecCc
Confidence            99999999999865543211100    00 11123478999999999999953        4678999999999999998


Q ss_pred             CCC
Q 039504          238 IMK  240 (240)
Q Consensus       238 ~~~  240 (240)
                      +++
T Consensus       397 ~~~  399 (552)
T PRK09274        397 VTR  399 (552)
T ss_pred             ccc
Confidence            863

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=7.2e-33  Score=231.93  Aligned_cols=209  Identities=30%  Similarity=0.415  Sum_probs=178.5

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ...++++++++|||||||.||++.++|.++.........    .+.+.++|+++..+|++|.+++. .++.++..|++++
T Consensus       157 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~~  231 (515)
T TIGR03098       157 PVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVAT----YLENRPDDRLLAVLPLSFDYGFN-QLTTAFYVGATVV  231 (515)
T ss_pred             CCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHH----HhCCCcccEEEEECchhhHhHHH-HHHHHHHcCCEEE
Confidence            345678999999999999999999999999877766554    34578899999999999999987 6789999999999


Q ss_pred             EccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccc
Q 039504          100 LMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT  179 (240)
Q Consensus       100 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  179 (240)
                      +.+.++++.+++.++++++|++.++|+++..|.+.... ...+.++|.++++|+++++++.+.+++.+++..+++.||+|
T Consensus       232 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~t  310 (515)
T TIGR03098       232 LHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWP-ESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLT  310 (515)
T ss_pred             EcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccC-CCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccc
Confidence            99889999999999999999999999999998875322 23567899999999999999999999999888999999999


Q ss_pred             ccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          180 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       180 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      |++......    .......++++|+|+++++++|+| +++++++.|+.|||+++|+.++
T Consensus       311 E~~~~~~~~----~~~~~~~~~~vG~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~  365 (515)
T TIGR03098       311 EAFRSTYLP----PEEVDRRPDSIGKAIPNAEVLVLR-EDGSECAPGEEGELVHRGALVA  365 (515)
T ss_pred             cccceEecc----cccccCCCCCcceecCCCEEEEEC-CCCCCCCCCCceEEEEcCchhh
Confidence            987543221    111234567899999999999999 6689999999999999998765

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-33  Score=242.50  Aligned_cols=209  Identities=24%  Similarity=0.313  Sum_probs=175.5

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ...++++++++|||||||.||+|.++|.++......+...   .+.+.++|+++...|++|.+++...++.++..|++++
T Consensus       141 ~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~---~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v  217 (705)
T PRK06060        141 PMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRK---ALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAV  217 (705)
T ss_pred             CCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHH---hhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEE
Confidence            3567889999999999999999999999988776544321   2356888999999999998887656778899999998


Q ss_pred             Ecc-CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccc
Q 039504          100 LMQ-KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM  178 (240)
Q Consensus       100 ~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  178 (240)
                      +.+ .+++..++..++++++|+++++|+++..+.+....  ..++++|.+++||+++++++.+++.+.|++.++++.||+
T Consensus       218 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~  295 (705)
T PRK06060        218 INSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP--DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGS  295 (705)
T ss_pred             EeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc--ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeec
Confidence            876 58889999999999999999999999999875432  356789999999999999999999999977899999999


Q ss_pred             cccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       179 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      ||++..+..+.     ......+++|+|.++++++|+| +++++++.|+.|||+|+|++++
T Consensus       296 tE~~~~~~~~~-----~~~~~~~~iG~p~~~~~v~i~d-~~g~~~~~g~~GEl~i~g~~v~  350 (705)
T PRK06060        296 TEVGQTFVSNR-----VDEWRLGTLGRVLPPYEIRVVA-PDGTTAGPGVEGDLWVRGPAIA  350 (705)
T ss_pred             cccCceEEecc-----CCCCCcCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEccchhh
Confidence            99975543321     1123456899999999999999 5689999999999999999876

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=1.2e-32  Score=231.62  Aligned_cols=212  Identities=27%  Similarity=0.366  Sum_probs=177.7

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHH-HHHHHhhcCc
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNS-VLLCSLRAGA   96 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~l~~G~   96 (240)
                      .....++++++++|||||||.||+|.++|.++.........    .++++++|++++.+|++|.+++.. ..+.++..|+
T Consensus       176 ~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~----~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~  251 (536)
T PRK10946        176 ATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVE----ICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGG  251 (536)
T ss_pred             cCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHH----hcCCCCCceEEEecCccccccchhhhHHHHhhcCc
Confidence            34556789999999999999999999999999888876655    446788999999999999888753 4678899999


Q ss_pred             eEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCC--CCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccc
Q 039504           97 GVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNP--MVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ  174 (240)
Q Consensus        97 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~--~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  174 (240)
                      ++++.+.+++..+++++++++++++.++|.+++.+.+..  ......++++|.+++||+++++++.+++.+.+ ++++++
T Consensus       252 ~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~-g~~~~~  330 (536)
T PRK10946        252 TVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAEL-GCQLQQ  330 (536)
T ss_pred             EEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhc-CCeEEE
Confidence            999988899999999999999999999999999998763  22334567899999999999999999999988 899999


Q ss_pred             cccccccccchhhccCCCCCCCCCCCCcccccc-CCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          175 GYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVV-RNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       175 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      .||+||+..... ..   .........++|+|+ |++.++|+| +++++++.|+.|||+|+|+.++
T Consensus       331 ~YG~tE~~~~~~-~~---~~~~~~~~~~~G~p~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~  391 (536)
T PRK10946        331 VFGMAEGLVNYT-RL---DDSDERIFTTQGRPMSPDDEVWVAD-ADGNPLPQGEVGRLMTRGPYTF  391 (536)
T ss_pred             eecccccceeee-cC---CCccccccccCCcccCCCceEEEEC-CCCCCCCCCCccEEEEecCccc
Confidence            999999653322 11   111223457889998 799999999 6789999999999999999876

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=2e-32  Score=228.90  Aligned_cols=211  Identities=28%  Similarity=0.443  Sum_probs=176.5

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ....++++++++|||||||.||+|.++|.++.........   ..++++++|+++...|++|..++...++.++..|+++
T Consensus       156 ~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~  232 (508)
T TIGR02262       156 AATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYAR---NTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATT  232 (508)
T ss_pred             CCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhH---HhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceE
Confidence            3455789999999999999999999999999876654221   1346789999999999999999876677888899888


Q ss_pred             EEcc-CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccc
Q 039504           99 LLMQ-KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG  177 (240)
Q Consensus        99 v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  177 (240)
                      ++.+ .+++..+++.+++++++++.++|+++..+............++|.++++|+++++++++.|++.| ++++++.||
T Consensus       233 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~v~~~YG  311 (508)
T TIGR02262       233 VLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARF-GVDIVDGIG  311 (508)
T ss_pred             EEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHHHHHHHHh-CCchhhCcc
Confidence            8765 47899999999999999999999999888766443334556899999999999999999999998 789999999


Q ss_pred             ccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          178 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       178 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      +||++.+...+.     ......+.+|+|.+++.++|+| +++++++.|+.|||+|+|+.++
T Consensus       312 ~tE~~~~~~~~~-----~~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~g~~Gel~i~~~~~~  367 (508)
T TIGR02262       312 STEMLHIFLSNL-----PGDVRYGTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSA  367 (508)
T ss_pred             ccccCceeecCC-----ccCCCCCCcCCCCCCcEEEEEC-CCCCCCCCCCeeEEEEecCccc
Confidence            999986544331     1123356889999999999999 8899999999999999998764

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=2.6e-33  Score=235.01  Aligned_cols=216  Identities=22%  Similarity=0.322  Sum_probs=167.5

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCcccc-CCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLT-NGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~-~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ...++|+++++|||||||.||+|.++|.++.........    .+++. ++|++++.+|++|.+++. .++.++..|+++
T Consensus       148 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~----~~~~~~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~~~  222 (525)
T PRK05851        148 PPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNA----RVGLDAATDVGCSWLPLYHDMGLA-FLLTAALAGAPL  222 (525)
T ss_pred             CCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHH----HhCCCCCCCeEEEcCCCccCccHH-HHHHHHHcCCeE
Confidence            346789999999999999999999999999888776655    34566 899999999999999997 578899999999


Q ss_pred             EEccC--C--CHHHHHHHHHhccceeeeechHHHHHHHhCCC-CCCCCccchhhhhccCCCCCHHHHHHHHHh---C--C
Q 039504           99 LLMQK--F--EIGALLELIQRHRVSVAAVVPPLVLALAKNPM-VADYDLSSIRVVLSGAAPLGKELEDALRSR---V--P  168 (240)
Q Consensus        99 v~~~~--~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~-~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~---~--~  168 (240)
                      ++.+.  +  ++..+++.+++++++++...|.++..+.+... .....++++|.+++||+++++++.+++.+.   +  +
T Consensus       223 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~  302 (525)
T PRK05851        223 WLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFD  302 (525)
T ss_pred             EEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCC
Confidence            98763  3  67889999999999987554444444443322 223457889999999999999999998875   3  2


Q ss_pred             CCcccccccccccccchhhccCCC----------CCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCC
Q 039504          169 QAILGQGYGMTEAGPVLSMCLGFA----------KQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQI  238 (240)
Q Consensus       169 ~~~i~~~yG~tE~~~~~~~~~~~~----------~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~  238 (240)
                      ..++++.||+||++..+.......          .........++|+|+|+++++|+|++.+.+++.|+.|||+|+|+++
T Consensus       303 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~  382 (525)
T PRK05851        303 AGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASM  382 (525)
T ss_pred             hhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecCch
Confidence            246999999999976544321000          0001123457999999999999997666779999999999999988


Q ss_pred             CC
Q 039504          239 MK  240 (240)
Q Consensus       239 ~~  240 (240)
                      ++
T Consensus       383 ~~  384 (525)
T PRK05851        383 MS  384 (525)
T ss_pred             hh
Confidence            63

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.7e-32  Score=230.65  Aligned_cols=212  Identities=29%  Similarity=0.510  Sum_probs=173.1

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCcccc-CCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLT-NGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~-~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      ....++|+++++|||||||.||+|.++|.++..........+.  ..+. ..+++++.+|++|.+++...++..+..|..
T Consensus       202 ~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~  279 (562)
T PRK05677        202 ANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMG--SNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNH  279 (562)
T ss_pred             CCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhc--cCCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCe
Confidence            3456789999999999999999999999998776544332111  1223 346888999999999987567777888877


Q ss_pred             EEEcc-CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccc
Q 039504           98 VLLMQ-KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGY  176 (240)
Q Consensus        98 ~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  176 (240)
                      .++.+ +.++..+++.++++++|++.++|+++..+..........++++|.+++||+++++++.+++++.+ ++++++.|
T Consensus       280 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~-~~~v~~~Y  358 (562)
T PRK05677        280 NILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQLATAERWKEVT-GCAICEGY  358 (562)
T ss_pred             EEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcCccCCHHHHHHHHHHc-CCCeeccC
Confidence            66554 57899999999999999999999999999886654555667899999999999999999999988 78999999


Q ss_pred             cccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          177 GMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       177 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      |+||++.++....     .....++++|+|+|++.++|+| +++++++.|+.|||+|+||.++
T Consensus       359 G~tE~~~~~~~~~-----~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~  415 (562)
T PRK05677        359 GMTETSPVVSVNP-----SQAIQVGTIGIPVPSTLCKVID-DDGNELPLGEVGELCVKGPQVM  415 (562)
T ss_pred             CccccCcceeecC-----ccCCCCCccCccCCCCEEEEEC-CCCCCCCCCCCeEEEEecCccc
Confidence            9999886654431     1123456899999999999999 5689999999999999999876

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.2e-32  Score=231.05  Aligned_cols=212  Identities=29%  Similarity=0.518  Sum_probs=181.8

Q ss_pred             CCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEE
Q 039504           21 IEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLL  100 (240)
Q Consensus        21 ~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~  100 (240)
                      ..++++++++|||||||.||+|.++|.++.........    .+++.++|+++...|++|.+|....++.++..|+++++
T Consensus       198 ~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~  273 (558)
T PRK12583        198 LDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAE----SLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVY  273 (558)
T ss_pred             cCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHH----HhCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEe
Confidence            45788999999999999999999999999877766554    34678899999999999999998788899999999986


Q ss_pred             c-cCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccc
Q 039504          101 M-QKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT  179 (240)
Q Consensus       101 ~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  179 (240)
                      . ..+++..+++.++++++|++.++|+++..+..........++++|.++++|+++++++.+++.+.++...+++.||+|
T Consensus       274 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~t  353 (558)
T PRK12583        274 PNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMT  353 (558)
T ss_pred             ecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecCCCCCHHHHHHHHHHcCCcceecccccc
Confidence            5 458999999999999999999999999988877665566788999999999999999999999998667899999999


Q ss_pred             ccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          180 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       180 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      |++.++..+...  ........++|+|.|++.++|+|++ +++++.|+.|||+|+|+.++
T Consensus       354 E~~~~~~~~~~~--~~~~~~~~~vG~p~~~~~~~i~d~~-~~~~~~g~~Gel~v~g~~~~  410 (558)
T PRK12583        354 ETSPVSLQTTAA--DDLERRVETVGRTQPHLEVKVVDPD-GATVPRGEIGELCTRGYSVM  410 (558)
T ss_pred             ccccceeccCcc--cccccccCCCCccCCCCeEEEECCC-CCCCCCCCeeEEEEEeCccc
Confidence            999766543211  1122345789999999999999966 89999999999999998765

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.1e-32  Score=268.89  Aligned_cols=216  Identities=24%  Similarity=0.298  Sum_probs=182.4

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      .....++++++|+|||||||.||||.++|.++.+.+.....    .+++.++|+++...|+.|..+++ .++.++..|++
T Consensus      1712 ~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~fd~~~~-~~~~~L~~G~~ 1786 (3956)
T PRK12467       1712 AVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQE----AYQLSAADVVLQFTSFAFDVSVW-ELFWPLINGAR 1786 (3956)
T ss_pred             CCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHH----hcCCCcccEEEEecCccHHHHHH-HHHHHHhCCCE
Confidence            34567899999999999999999999999999888877665    45678999999999999998887 67889999999


Q ss_pred             EEEccC---CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccc
Q 039504           98 VLLMQK---FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ  174 (240)
Q Consensus        98 ~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  174 (240)
                      +++.++   .++..+++.++++++|++.++|++++.|.+... ....++++|.+++|||++++++.+.+.+.+++.+++|
T Consensus      1787 lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 1865 (3956)
T PRK12467       1787 LVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE-QVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFN 1865 (3956)
T ss_pred             EEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-ccccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEe
Confidence            988763   689999999999999999999999999987532 2345678999999999999999999999887788999


Q ss_pred             cccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          175 GYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       175 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      .||+||++..+................++|+|++++.+.|+| ++++++|.|++|||+|+|+++++
T Consensus      1866 ~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~GEl~i~G~~v~~ 1930 (3956)
T PRK12467       1866 LYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILD-ASLNPVPIGVAGELYLGGVGLAR 1930 (3956)
T ss_pred             CccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEeccccccc
Confidence            999999986554332211111222356899999999999999 77999999999999999999874

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=5.2e-32  Score=225.07  Aligned_cols=208  Identities=31%  Similarity=0.445  Sum_probs=175.0

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ....++++++++|||||||.||+|.++|.++...+.....    .++++++|+++..+|++|++++. .++.++..|+++
T Consensus       136 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~~  210 (483)
T PRK03640        136 EEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSAL----NLGLTEDDCWLAAVPIFHISGLS-ILMRSVIYGMRV  210 (483)
T ss_pred             CCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHH----hcCCCcCcEEEEecCHHHHHHHH-HHHHHHhcCCEE
Confidence            3456789999999999999999999999998776655444    34678999999999999999987 578888999999


Q ss_pred             EEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccc
Q 039504           99 LLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM  178 (240)
Q Consensus        99 v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  178 (240)
                      ++.+..++..+++.++++++|++.++|+++..|.+..... ....++|.++++|+++++.+.+.+++.  ++++++.||+
T Consensus       211 ~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~  287 (483)
T PRK03640        211 VLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSYGM  287 (483)
T ss_pred             EecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHHh--CCCeeeeecc
Confidence            9999999999999999999999999999999998765433 234689999999999999999988874  7899999999


Q ss_pred             cccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       179 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      ||.+..+....   ........+++|+|.++++++|+| + +++++.|+.|||+|+||.++
T Consensus       288 tE~~~~~~~~~---~~~~~~~~~~vG~p~~~~~~~i~~-~-~~~~~~g~~Gel~v~g~~~~  343 (483)
T PRK03640        288 TETASQIVTLS---PEDALTKLGSAGKPLFPCELKIEK-D-GVVVPPFEEGEIVVKGPNVT  343 (483)
T ss_pred             CcccccccccC---cccccccCCCcccccCCcEEEEec-C-CCcCCCCCceEEEEECcchh
Confidence            99875433321   111234567899999999999998 4 48899999999999999876

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.8e-32  Score=226.02  Aligned_cols=206  Identities=29%  Similarity=0.426  Sum_probs=175.6

Q ss_pred             CCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEE
Q 039504           21 IEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLL  100 (240)
Q Consensus        21 ~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~  100 (240)
                      ..++|+++++|||||||.||+|.++|.++.........    .+++.++|+++..+|++|..|+...++.++..|++++.
T Consensus       125 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~  200 (471)
T PRK07787        125 PDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAE----AWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVH  200 (471)
T ss_pred             CCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHH----hcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEe
Confidence            45789999999999999999999999999888766655    44578899999999999999998778999999999999


Q ss_pred             ccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccccc
Q 039504          101 MQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE  180 (240)
Q Consensus       101 ~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE  180 (240)
                      .+..++..+++.++ ++++++.++|+++..+.+.... ...++++|.++.||+++++++++++++.+ +.++++.||+||
T Consensus       201 ~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~-~~~l~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE  277 (471)
T PRK07787        201 TGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA-ARALRGARLLVSGSAALPVPVFDRLAALT-GHRPVERYGMTE  277 (471)
T ss_pred             cCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc-cccccceeEEEECCCCCCHHHHHHHHHHc-CCCeecccCccc
Confidence            98899999999999 9999999999999999875432 23567899999999999999999999988 789999999999


Q ss_pred             cccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCC-CCC-CceEEEeCCCCC
Q 039504          181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLP-HNQ-PGEICIRGPQIM  239 (240)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~-~g~-~Gel~v~~~~~~  239 (240)
                      ++......     ........++|+|.+++.++|+| +++++++ .|+ .|||+|+|+.++
T Consensus       278 ~~~~~~~~-----~~~~~~~~~vG~~~~g~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~  332 (471)
T PRK07787        278 TLITLSTR-----ADGERRPGWVGLPLAGVETRLVD-EDGGPVPHDGETVGELQVRGPTLF  332 (471)
T ss_pred             cCcceecC-----CCCcccCCcccccCCCcEEEEEC-CCCCCCCCCCCCceEEEEECcccc
Confidence            97644332     11233456899999999999999 4578887 454 899999999875

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=1.1e-32  Score=237.42  Aligned_cols=227  Identities=26%  Similarity=0.358  Sum_probs=167.2

Q ss_pred             chhhHhhcCCC-CCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhh
Q 039504            4 HFTVLSEADED-QIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIY   82 (240)
Q Consensus         4 ~~~~l~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~   82 (240)
                      +|+++.+.... ........++|+++|+|||||||.||||.++|+++...+.......   ..+.++|++++++|++|++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~---~~~~~~d~~l~~lPl~Hi~  305 (696)
T PLN02387        229 SFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVV---PKLGKNDVYLAYLPLAHIL  305 (696)
T ss_pred             EHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhc---CCCCCCCEEEEECcHHHHH
Confidence            45555543322 1122345689999999999999999999999999988776654321   2467899999999999999


Q ss_pred             hhHHHHHHHhhcCceEEEccCCC--------HHHHHHHHHhccceeeeechHHHHHHHhCCCCC----------------
Q 039504           83 SLNSVLLCSLRAGAGVLLMQKFE--------IGALLELIQRHRVSVAAVVPPLVLALAKNPMVA----------------  138 (240)
Q Consensus        83 g~~~~~~~~l~~G~~~v~~~~~~--------~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~----------------  138 (240)
                      ++. ....++..|+.+.+.....        +..++..++++++|++.++|.+++.+.+.....                
T Consensus       306 ~~~-~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~  384 (696)
T PLN02387        306 ELA-AESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAY  384 (696)
T ss_pred             HHH-HHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            987 3444566777776643311        234567889999999999999999886531100                


Q ss_pred             --------CC----------------------Cc-cchhhhhccCCCCCHHHHHHHHHhCCCCcccccccccccccchhh
Q 039504          139 --------DY----------------------DL-SSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSM  187 (240)
Q Consensus       139 --------~~----------------------~~-~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~  187 (240)
                              +.                      .+ .++|.+++||+++++++.+.++..+ ++.+++.||+||++..++.
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~-g~~v~~~YG~TEt~~~~~~  463 (696)
T PLN02387        385 KRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICL-GAPIGQGYGLTETCAGATF  463 (696)
T ss_pred             HHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHc-CCCeeEeechhhcccceee
Confidence                    00                      01 4789999999999999998888888 7899999999999865544


Q ss_pred             ccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCC---CCCCCceEEEeCCCCCC
Q 039504          188 CLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASL---PHNQPGEICIRGPQIMK  240 (240)
Q Consensus       188 ~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~---~~g~~Gel~v~~~~~~~  240 (240)
                      ..     ..+...+++|+|.|+++++|+|++++...   ++++.|||+|+||.+|+
T Consensus       464 ~~-----~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~  514 (696)
T PLN02387        464 SE-----WDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTL  514 (696)
T ss_pred             cC-----cccCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccc
Confidence            31     12334678999999999999995444332   34457999999999874

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.9e-32  Score=227.11  Aligned_cols=231  Identities=24%  Similarity=0.392  Sum_probs=179.6

Q ss_pred             chhhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhh
Q 039504            4 HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS   83 (240)
Q Consensus         4 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g   83 (240)
                      .++++.....+........++++++++|||||||.||+|.++|.++........  ....++++++|+++...|++|..+
T Consensus       156 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~--~~~~~~~~~~d~~l~~~p~~h~~~  233 (539)
T PRK07008        156 CYETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAA--LPDAMGLSARDAVLPVVPMFHVNA  233 (539)
T ss_pred             cHHHHhcccCCCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhh--cccccCCCCCceEEecCchHHhhh
Confidence            344554443333333456678899999999999999999999999864332111  111456788999999999999887


Q ss_pred             hHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHH
Q 039504           84 LNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDA  162 (240)
Q Consensus        84 ~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~  162 (240)
                      +. ..+.++..|+++++.+ .+++..+++.++++++|++..+|+++..+.+........++++|.++++|+++++++.++
T Consensus       234 ~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~  312 (539)
T PRK07008        234 WG-LPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRT  312 (539)
T ss_pred             HH-HHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHH
Confidence            75 5677788999988864 589999999999999999999999999999877666667889999999999999999999


Q ss_pred             HHHhCCCCcccccccccccccchhhccCCCCC------CCCCCCCccccccCCceEEEeeCCCCCCCCCC--CCceEEEe
Q 039504          163 LRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQ------PFPTKSGSCGTVVRNAELKVIDPETGASLPHN--QPGEICIR  234 (240)
Q Consensus       163 ~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~------~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g--~~Gel~v~  234 (240)
                      +.+.+ +.++++.||+||++..+..+......      .......++|+|+|++.++|+| +++++++.+  +.|||+++
T Consensus       313 ~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~  390 (539)
T PRK07008        313 FEDEY-GVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVR  390 (539)
T ss_pred             HHHHh-CCceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEe
Confidence            99988 78999999999998654433111000      0011245789999999999999 568888754  57999999


Q ss_pred             CCCCC
Q 039504          235 GPQIM  239 (240)
Q Consensus       235 ~~~~~  239 (240)
                      |+.++
T Consensus       391 g~~~~  395 (539)
T PRK07008        391 GPWVI  395 (539)
T ss_pred             CCccc
Confidence            98865

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.3e-32  Score=235.38  Aligned_cols=216  Identities=27%  Similarity=0.373  Sum_probs=170.0

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ...++|+++++|||||||.||+|.++|+++.........    .+++.++|+++..+|++|.+|+.. .+.+++.|++++
T Consensus       176 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~Pl~h~~gl~~-~~~~~~~G~~~~  250 (631)
T PRK07769        176 EANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVID----ALEGQEGDRGVSWLPFFHDMGLIT-VLLPALLGHYIT  250 (631)
T ss_pred             CCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHH----HcCCCCcceEEEeCCCcCchhhHH-HHHHHhhCCeEE
Confidence            356789999999999999999999999999877766554    345788999999999999999974 455566788887


Q ss_pred             EccC--C--CHHHHHHHHHhccc---eeeeechHHHHHHHhCC--CC---CCCCccchhhhhccCCCCCHHHHHHHHHhC
Q 039504          100 LMQK--F--EIGALLELIQRHRV---SVAAVVPPLVLALAKNP--MV---ADYDLSSIRVVLSGAAPLGKELEDALRSRV  167 (240)
Q Consensus       100 ~~~~--~--~~~~~~~~i~~~~~---t~l~~~p~~~~~l~~~~--~~---~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~  167 (240)
                      +..+  +  ++..+++.+.++++   +++..+|.++..+....  ..   ...+++++|.+++||+++++++.+++.+.|
T Consensus       251 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~  330 (631)
T PRK07769        251 FMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAF  330 (631)
T ss_pred             EEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccCCCCHHHHHHHHHHH
Confidence            7643  4  89999999999886   78899999887766421  11   134678999999999999999999999987


Q ss_pred             C-----CCcccccccccccccchhhccCCCCC----------------------CCCCCCCccccccCCceEEEeeCCCC
Q 039504          168 P-----QAILGQGYGMTEAGPVLSMCLGFAKQ----------------------PFPTKSGSCGTVVRNAELKVIDPETG  220 (240)
Q Consensus       168 ~-----~~~i~~~yG~tE~~~~~~~~~~~~~~----------------------~~~~~~~~~G~~~~~~~v~i~d~~~~  220 (240)
                      +     ...+++.||+||++..+.........                      .......++|+|.++..++|+|++++
T Consensus       331 ~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g  410 (631)
T PRK07769        331 APYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETA  410 (631)
T ss_pred             hhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCC
Confidence            2     24699999999987655432110000                      00011247899999999999998889


Q ss_pred             CCCCCCCCceEEEeCCCCCC
Q 039504          221 ASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       221 ~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ++++.|+.|||+|+||++++
T Consensus       411 ~~~~~ge~GEl~v~gp~v~~  430 (631)
T PRK07769        411 SELPDGQIGEIWLHGNNIGT  430 (631)
T ss_pred             cCCCCCCEEEEEecCCCccc
Confidence            99999999999999999874

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.5e-31  Score=226.25  Aligned_cols=210  Identities=36%  Similarity=0.623  Sum_probs=174.1

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccc-cCCcEEEEecchHHhhhhHHHHHHHhhcCceEEE
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYL-TNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLL  100 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~  100 (240)
                      .++++++++|||||||.||+|.++|.++..........   .... ...+++++.+|++|.+++...+..++..|..+++
T Consensus       204 ~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~  280 (563)
T PRK06710        204 PENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQW---LYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVL  280 (563)
T ss_pred             CCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhh---ccCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEE
Confidence            35789999999999999999999999987554332221   1123 3346788999999999887566778899999999


Q ss_pred             ccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccccc
Q 039504          101 MQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE  180 (240)
Q Consensus       101 ~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE  180 (240)
                      .+++++..+++.++++++|++.++|++++.+..........++++|.+++||+++++++.+++.+.+ +.++++.||+||
T Consensus       281 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE  359 (563)
T PRK06710        281 IPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEKFETVT-GGKLVEGYGLTE  359 (563)
T ss_pred             cCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCCcCCHHHHHHHHHhh-CCCEeccccccc
Confidence            8889999999999999999999999999999886555555678999999999999999999999988 788999999999


Q ss_pred             cccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      ++........    .....++++|++.+++.++|+|++++++++.|+.|||+|+|+.++
T Consensus       360 ~~~~~~~~~~----~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~  414 (563)
T PRK06710        360 SSPVTHSNFL----WEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIM  414 (563)
T ss_pred             CccccccCcc----cccccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCccc
Confidence            9865433211    112335689999999999999988899999999999999999875

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=2.4e-32  Score=270.13  Aligned_cols=216  Identities=25%  Similarity=0.323  Sum_probs=184.8

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      .....|+++++++|||||||.||||.++|+++.........    .+++.++|+++..+|++|..+.+ .++.++..|++
T Consensus      4688 ~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~fd~~~~-~~~~~L~~G~~ 4762 (5163)
T PRK12316       4688 AVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGE----RYELTPDDRVLQFMSFSFDGSHE-GLYHPLINGAS 4762 (5163)
T ss_pred             ccCCCCCceEEEEECCCCCCCCCEeeeccHHHHHHHHHHHH----hcCCCcCCeEEEecCcchhhHHH-HHHHHHhCCCE
Confidence            34567899999999999999999999999999888877665    45688999999999999998877 68889999999


Q ss_pred             EEEccC--CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccc
Q 039504           98 VLLMQK--FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG  175 (240)
Q Consensus        98 ~v~~~~--~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  175 (240)
                      +++.+.  +++..+++.++++++|++.++|++++.|.+...... .++++|.+++|||++++++.+++.+.+++++++|.
T Consensus      4763 lvi~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~-~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 4841 (5163)
T PRK12316       4763 VVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDG-EPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNG 4841 (5163)
T ss_pred             EEEcCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhhhcccc-CCCCccEEEEecccCCHHHHHHHHHhCCCCEEEec
Confidence            998764  389999999999999999999999999987654433 67899999999999999999999888878999999


Q ss_pred             ccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          176 YGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       176 yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ||+||++..+................++|+|++++.++|+| ++++++|.|++|||+|+||++++
T Consensus      4842 YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~g~~GEl~i~G~~v~~ 4905 (5163)
T PRK12316       4842 YGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLD-GQLNPLPVGVAGELYLGGEGVAR 4905 (5163)
T ss_pred             ccCccceEEEEEEEcccccccCCCCCcccccccCCEEEEEC-CCCCcCCCCCCceEEECCcccch
Confidence            99999987655443222122234557899999999999999 77999999999999999999874

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.2e-32  Score=234.79  Aligned_cols=216  Identities=25%  Similarity=0.409  Sum_probs=165.0

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCcc-ccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLY-LTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~-~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ...++|+++++|||||||.||+|.++|+++.........    .+. +.+++++++.+|++|..|+...++.++..|.++
T Consensus       189 ~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~  264 (612)
T PRK12476        189 ELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMIL----SIDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHST  264 (612)
T ss_pred             CCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHH----HhccCCCCceEEEeCCcccccchHHHHHHHhcCCeEE
Confidence            456789999999999999999999999999876655443    234 577899999999999999875555556555555


Q ss_pred             EEcc-CC--CHHHHHHHHH--hccceeeeechHHHHHHHhCCC----CCCCCccchhhhhccCCCCCHHHHHHHHHhCC-
Q 039504           99 LLMQ-KF--EIGALLELIQ--RHRVSVAAVVPPLVLALAKNPM----VADYDLSSIRVVLSGAAPLGKELEDALRSRVP-  168 (240)
Q Consensus        99 v~~~-~~--~~~~~~~~i~--~~~~t~l~~~p~~~~~l~~~~~----~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~-  168 (240)
                      ++.+ .+  ++..+++.++  +++++++..+|+++..+.....    ....+++++| +++||+++++++.+++++.|+ 
T Consensus       265 ~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~  343 (612)
T PRK12476        265 LMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAP  343 (612)
T ss_pred             EECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecccCCCHHHHHHHHHHHHh
Confidence            5543 23  8899999995  4899999999998887766421    1234677899 999999999999999999872 


Q ss_pred             ----CCcccccccccccccchhhccCCCC----------------------CCCCCCCCccccccCCceEEEeeCCCCCC
Q 039504          169 ----QAILGQGYGMTEAGPVLSMCLGFAK----------------------QPFPTKSGSCGTVVRNAELKVIDPETGAS  222 (240)
Q Consensus       169 ----~~~i~~~yG~tE~~~~~~~~~~~~~----------------------~~~~~~~~~~G~~~~~~~v~i~d~~~~~~  222 (240)
                          ..++++.||+||++..+........                      ........++|+|.|+++++|+|++++++
T Consensus       344 ~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~  423 (612)
T PRK12476        344 YGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAE  423 (612)
T ss_pred             cCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcC
Confidence                3469999999998755432210000                      00001124789999999999999766999


Q ss_pred             CCCCCCceEEEeCCCCCC
Q 039504          223 LPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       223 ~~~g~~Gel~v~~~~~~~  240 (240)
                      +|.|+.|||+|+|+++++
T Consensus       424 ~~~g~~GEl~v~g~~v~~  441 (612)
T PRK12476        424 LPDGEVGEIWLHGDNIGR  441 (612)
T ss_pred             CCCCCEEEEEEcCCcccc
Confidence            999999999999999874

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=3.8e-32  Score=248.76  Aligned_cols=213  Identities=23%  Similarity=0.322  Sum_probs=179.2

Q ss_pred             CCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEE
Q 039504           21 IEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLL  100 (240)
Q Consensus        21 ~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~  100 (240)
                      ..++++++++|||||||.||+|.++|+++.+...+...    .+++.++|+++...|++|..+++ .++.++..|+++++
T Consensus       595 ~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~~  669 (1296)
T PRK10252        595 SQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQN----HYPLTADDVVLQKTPCSFDVSVW-EFFWPFIAGAKLVM  669 (1296)
T ss_pred             CCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHH----hcCCCCCCEEEEeCCcchhhhHH-HHHHHHhCCCEEEE
Confidence            36789999999999999999999999999988877665    45688999999999999988877 67889999999998


Q ss_pred             cc---CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCC--CCccchhhhhccCCCCCHHHHHHHHHhCCCCccccc
Q 039504          101 MQ---KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVAD--YDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG  175 (240)
Q Consensus       101 ~~---~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~--~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  175 (240)
                      .+   ..++..+++.++++++|++.++|+++..+.+......  ..+.++|.+++|||++++++.+++.+.+ +++++|.
T Consensus       670 ~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-~~~l~n~  748 (1296)
T PRK10252        670 AEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLT-GAPLHNL  748 (1296)
T ss_pred             CChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcC-CCEEEeC
Confidence            75   3689999999999999999999999998887643322  3457899999999999999999999987 7899999


Q ss_pred             ccccccccchhhccCCCCC--CCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          176 YGMTEAGPVLSMCLGFAKQ--PFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       176 yG~tE~~~~~~~~~~~~~~--~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ||+||++..+.........  .......++|+|.+++.+.|+| +.++++|.|+.|||+|+|+.+++
T Consensus       749 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~g~~Gel~i~g~~~~~  814 (1296)
T PRK10252        749 YGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILD-ARMRPVPPGVAGDLYLTGIQLAQ  814 (1296)
T ss_pred             CCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEecccccch
Confidence            9999998655543221111  0123346799999999999999 77999999999999999998864

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=8e-32  Score=224.99  Aligned_cols=214  Identities=25%  Similarity=0.322  Sum_probs=178.8

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ...+++.++++|||||||.||++.++|.++.........    .++...+++++...|++|..++. .++.++..|++++
T Consensus       137 ~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~----~~~~~~~~~~l~~~p~~~~~~~~-~~~~~l~~G~~~~  211 (502)
T TIGR01734       137 AVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLA----DFPLSEGKQFLNQAPFSFDLSVM-DLYPCLASGGTLH  211 (502)
T ss_pred             cCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHH----hCCCCCCceEEeecCceechhHH-HHHHHHHCCCEEE
Confidence            356788999999999999999999999999887776655    34678899999999999988886 6788999999998


Q ss_pred             EccC---CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccc
Q 039504          100 LMQK---FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGY  176 (240)
Q Consensus       100 ~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  176 (240)
                      +.++   .++..+++.+++++++.+..+|+++..+..........++++|.++++|+++++++.+++.+.+++.++++.|
T Consensus       212 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~y  291 (502)
T TIGR01734       212 CLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTY  291 (502)
T ss_pred             EcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCc
Confidence            8764   6889999999999999999999999887765444455678999999999999999999999999889999999


Q ss_pred             cccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          177 GMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       177 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      |+||++..+................++|++.|+++++|+| +++++++.|+.|||+|+|+.++
T Consensus       292 G~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~~~~  353 (502)
T TIGR01734       292 GPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEPLPEGEKGEIVIVGPSVS  353 (502)
T ss_pred             cCCcceEEEEEEEccccccccCCccccccccCCCEEEEEC-CCCCCCCCCCeeEEEEcccccc
Confidence            9999875433321111111233445799999999999999 5589999999999999999876

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=4.3e-32  Score=235.01  Aligned_cols=204  Identities=30%  Similarity=0.527  Sum_probs=171.2

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ...++|+++++|||||||.||+|.++|.++.........    .+++.++|++++.+|++|.+++...++.++..|++++
T Consensus       361 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv  436 (718)
T PRK08043        361 KQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKT----IADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVF  436 (718)
T ss_pred             CCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH----hhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEE
Confidence            346789999999999999999999999999887766554    3467899999999999999998767889999999999


Q ss_pred             EccC-CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccc
Q 039504          100 LMQK-FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM  178 (240)
Q Consensus       100 ~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  178 (240)
                      +.+. +++..+++.+.++++|++.++|+++..+.+..  ...+++++|.+++||+++++++.+.+++.| ++++++.||+
T Consensus       437 ~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~-g~~l~~~YG~  513 (718)
T PRK08043        437 LYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTKQLWQDKF-GLRILEGYGV  513 (718)
T ss_pred             EeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHHHHHHHHc-CCCeecccCc
Confidence            8764 67788899999999999999999998876642  234567899999999999999999999998 7899999999


Q ss_pred             cccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       179 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ||++..+....     ......+++|+|.|+++++|+|.+ +    .++.|||+|+|+++++
T Consensus       514 TE~~~~~~~~~-----~~~~~~~svG~p~pg~~~~i~d~~-~----~~~~Gel~v~g~~v~~  565 (718)
T PRK08043        514 TECAPVVSINV-----PMAAKPGTVGRILPGMDARLLSVP-G----IEQGGRLQLKGPNIMN  565 (718)
T ss_pred             ccccceEEecC-----CcccCCCCCCCcCCCCeeEEecCC-C----CCCceEEEEecCCccc
Confidence            99976554321     122356899999999999999843 3    2567999999998863

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=5.6e-32  Score=230.66  Aligned_cols=204  Identities=23%  Similarity=0.280  Sum_probs=163.3

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCcccc--CCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLT--NGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~--~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      ...++|+++|+|||||||.||+|.++|.++..........    +...  ..+++++.+|++|.+++...++.++..|++
T Consensus       205 ~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~  280 (614)
T PRK08180        205 AVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQT----FPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGT  280 (614)
T ss_pred             CCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhh----ccccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCE
Confidence            4567899999999999999999999999998877665442    2232  568999999999999987677889999999


Q ss_pred             EEEccC-CCH---HHHHHHHHhccceeeeechHHHHHHHhCCCC----CCCCccchhhhhccCCCCCHHHHHHHHHh---
Q 039504           98 VLLMQK-FEI---GALLELIQRHRVSVAAVVPPLVLALAKNPMV----ADYDLSSIRVVLSGAAPLGKELEDALRSR---  166 (240)
Q Consensus        98 ~v~~~~-~~~---~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~----~~~~~~~lr~v~~~G~~~~~~~~~~~~~~---  166 (240)
                      +++.+. +++   ..+++.++++++|++.++|.++..|.+....    ....++++|.+++||+++++++.+++++.   
T Consensus       281 v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~  360 (614)
T PRK08180        281 LYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEA  360 (614)
T ss_pred             EEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHHHHHHHHHHHHh
Confidence            988653 443   5678889999999999999999988774322    12346789999999999999999999875   


Q ss_pred             -CC-CCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          167 -VP-QAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       167 -~~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                       ++ +.++++.||+||++.++....     ......+++|+|.|+++++|+|+        |+.|||+|+||.+++
T Consensus       361 ~~g~~~~l~~~YG~TE~~~~~~~~~-----~~~~~~~svG~p~pg~~v~i~d~--------~~~GEi~vrg~~v~~  423 (614)
T PRK08180        361 TCGERIRMMTGLGMTETAPSATFTT-----GPLSRAGNIGLPAPGCEVKLVPV--------GGKLEVRVKGPNVTP  423 (614)
T ss_pred             hcCCCceeeeeecccccCCceEecc-----cccCCCCcccCccCCcEEEEecC--------CCCcEEEEecCccch
Confidence             32 367999999999986654431     12235679999999999999983        456999999998863

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=4.6e-32  Score=249.36  Aligned_cols=212  Identities=21%  Similarity=0.229  Sum_probs=176.5

Q ss_pred             CCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEE
Q 039504           21 IEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLL  100 (240)
Q Consensus        21 ~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~  100 (240)
                      ..++|+++++|||||||.||||.++|+++...+.+...    .+++.++|+++...|++|..++. .++.+++.|+++++
T Consensus       412 ~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~~~~~~~~~d~~~~-~i~~~L~~G~~l~~  486 (1389)
T TIGR03443       412 VGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAK----RFGLSENDKFTMLSGIAHDPIQR-DMFTPLFLGAQLLV  486 (1389)
T ss_pred             CCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHH----hcCCCCCCEEEEecCceecchHH-HHHHHHhCCCEEEE
Confidence            46789999999999999999999999999888776655    44678899999999999988776 67889999999998


Q ss_pred             ccC---CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccc
Q 039504          101 MQK---FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG  177 (240)
Q Consensus       101 ~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  177 (240)
                      .+.   .++..+++.++++++|++.++|++++.|....   ...++++|.+++||+++++.+.+++.+.+++++++|.||
T Consensus       487 ~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG  563 (1389)
T TIGR03443       487 PTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---TTPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYG  563 (1389)
T ss_pred             cChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---cccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECcc
Confidence            764   46889999999999999999999999987543   235678999999999999999999999888899999999


Q ss_pred             ccccccchhhccCCCCCC------CCCCCCccccccCCceEEEeeCC-CCCCCCCCCCceEEEeCCCCCC
Q 039504          178 MTEAGPVLSMCLGFAKQP------FPTKSGSCGTVVRNAELKVIDPE-TGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       178 ~tE~~~~~~~~~~~~~~~------~~~~~~~~G~~~~~~~v~i~d~~-~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      +||++..+..........      ......++|+|++++++.|+|++ .+++++.|++|||+|+||++++
T Consensus       564 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~  633 (1389)
T TIGR03443       564 TTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAE  633 (1389)
T ss_pred             CCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCCceEEEecccccch
Confidence            999986555432111100      01134578999999999999964 3578999999999999999874

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.7e-32  Score=234.46  Aligned_cols=226  Identities=25%  Similarity=0.327  Sum_probs=165.5

Q ss_pred             chhhHhhcCC---CCC-CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCcc-ccCCcEEEEecch
Q 039504            4 HFTVLSEADE---DQI-PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLY-LTNGDVVLCVLPL   78 (240)
Q Consensus         4 ~~~~l~~~~~---~~~-~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~-~~~~d~~l~~~p~   78 (240)
                      +|+++++...   ... ......++|+++++|||||||.||||.++|+++...+......+...+. +.++|++++++|+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl  319 (700)
T PTZ00216        240 AWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPL  319 (700)
T ss_pred             EHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChH
Confidence            5666655431   111 1234568999999999999999999999999998877665442211122 3678999999999


Q ss_pred             HHhhhhHHHHHHHhhcCceEEEccCCCHHHHHH-------HHHhccceeeeechHHHHHHHhCCCC--------------
Q 039504           79 FHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLE-------LIQRHRVSVAAVVPPLVLALAKNPMV--------------  137 (240)
Q Consensus        79 ~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~-------~i~~~~~t~l~~~p~~~~~l~~~~~~--------------  137 (240)
                      +|+++.. .....+..|+.+.+.   ++..+.+       .++++++|++.++|.+++.+.+....              
T Consensus       320 ~H~~~~~-~~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~  395 (700)
T PTZ00216        320 AHIMEFG-VTNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFD  395 (700)
T ss_pred             HHHHHHH-HHHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            9999876 445567788877663   3444444       57889999999999999887642110              


Q ss_pred             -----------CCCC---------------c-cchhhhhccCCCCCHHHHHHHHHhCCCCcccccccccccccchhhccC
Q 039504          138 -----------ADYD---------------L-SSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLG  190 (240)
Q Consensus       138 -----------~~~~---------------~-~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~  190 (240)
                                 .+..               + .++|.+++||+++++++.++++..+ + ++++.||+||++......  
T Consensus       396 ~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~-~-~l~~~YG~TEt~~~~~~~--  471 (700)
T PTZ00216        396 HAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVF-G-MVIQGWGLTETVCCGGIQ--  471 (700)
T ss_pred             HHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHh-h-hHhhccCccccccccccc--
Confidence                       0000               0 4689999999999999998888877 5 899999999997654432  


Q ss_pred             CCCCCCCCCCCccccccCCceEEEeeCCCC-CCCCCCCCceEEEeCCCCCC
Q 039504          191 FAKQPFPTKSGSCGTVVRNAELKVIDPETG-ASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       191 ~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~-~~~~~g~~Gel~v~~~~~~~  240 (240)
                         .......+++|+|.|+++++|+|.++. ...++++.|||+|+||++++
T Consensus       472 ---~~~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~  519 (700)
T PTZ00216        472 ---RTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFK  519 (700)
T ss_pred             ---CCCCCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccc
Confidence               112345689999999999999995432 23456778999999999874

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-31  Score=224.59  Aligned_cols=210  Identities=31%  Similarity=0.487  Sum_probs=178.9

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .++|+++++|||||||.||++.++|.++.........    .+++..+|+++..+|++|.+++.  ++.++..|+++++.
T Consensus       166 ~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~----~~~~~~~~~~l~~~pl~~~~g~~--~~~~l~~G~~~~~~  239 (524)
T PRK06188        166 LPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLA----EWEWPADPRFLMCTPLSHAGGAF--FLPTLLRGGTVIVL  239 (524)
T ss_pred             CCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHh----hcCCCcCcEEEEecCchhhhhHH--HHHHHHcCCEEEEc
Confidence            4567999999999999999999999999887776665    45678899999999999988865  57788999999999


Q ss_pred             cCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccccc
Q 039504          102 QKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA  181 (240)
Q Consensus       102 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~  181 (240)
                      +.+++..+++.+++++++++..+|++++.+++........++++|.+++||++++++..+.+.+.+ +..+++.||+||+
T Consensus       240 ~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~  318 (524)
T PRK06188        240 AKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERF-GPIFAQYYGQTEA  318 (524)
T ss_pred             CCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHh-CchhhheeCcccc
Confidence            999999999999999999999999999999988766666788999999999999999999998888 6779999999999


Q ss_pred             ccchhhccCCCC-CCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          182 GPVLSMCLGFAK-QPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       182 ~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      +..+........ ........++|+|.|++.++|+| +++++++.|+.|||+|+|+.++
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~-~~~~~~~~g~~Gel~v~~~~~~  376 (524)
T PRK06188        319 PMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD-EDGREVAQGEVGEICVRGPLVM  376 (524)
T ss_pred             CCceeecCchhccccccccCCccccccCCcEEEEEc-CCCCCCCCCCeeEEEEECcchh
Confidence            765544321111 01123456789999999999999 5589999999999999998765

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=4.8e-32  Score=268.04  Aligned_cols=216  Identities=21%  Similarity=0.282  Sum_probs=181.2

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      .....|+|+++|+|||||||.||||.++|.++.+.+.....    .+++.++|+++.+.|++|..+.. .++.++..|++
T Consensus      2140 ~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~fd~~~~-~~~~~L~~G~~ 2214 (5163)
T PRK12316       2140 AVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGE----RYELSPADCELQFMSFSFDGAHE-QWFHPLLNGAR 2214 (5163)
T ss_pred             CCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHH----hcCCCCcceEEEecCchHHHHHH-HHHHHHhCCCE
Confidence            34567899999999999999999999999999988877766    45678999999999999987776 68899999999


Q ss_pred             EEEccC--CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccc
Q 039504           98 VLLMQK--FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG  175 (240)
Q Consensus        98 ~v~~~~--~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  175 (240)
                      +++.+.  +++..+++.++++++|++.++|++++.|........ ...++|.+++|||++++++.++|.+.+++.+++|.
T Consensus      2215 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~ 2293 (5163)
T PRK12316       2215 VLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDG-RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNG 2293 (5163)
T ss_pred             EEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhccc-CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEEC
Confidence            977653  689999999999999999999999999987654333 33489999999999999999999998888999999


Q ss_pred             ccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          176 YGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       176 yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ||+||++..+................++|+|++++++.|+| ++++++|.|++|||+|+|+++++
T Consensus      2294 YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~g~~GEl~i~G~~v~~ 2357 (5163)
T PRK12316       2294 YGPTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILD-ADLNLLAPGMAGELYLGGEGLAR 2357 (5163)
T ss_pred             ccchhheeeeeeeecccccccCCCcCCcccccCCCEEEEEC-CCCCCCCCCCeeEEEecchhhcc
Confidence            99999986554332111111112235799999999999999 66899999999999999999874

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.6e-31  Score=224.68  Aligned_cols=215  Identities=32%  Similarity=0.549  Sum_probs=173.9

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCC-----CccccCC-cEEEEecchHHhhhhHHHHHHHh
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENP-----NLYLTNG-DVVLCVLPLFHIYSLNSVLLCSL   92 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~-----~~~~~~~-d~~l~~~p~~~~~g~~~~~~~~l   92 (240)
                      ....++++++++|||||||.||+|.++|+++..........+..     ...+..+ ++++..+|++|.+++....+..+
T Consensus       202 ~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~  281 (562)
T PRK12492        202 VPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMM  281 (562)
T ss_pred             CCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHh
Confidence            34567899999999999999999999999987665543321110     0112333 56788999999999876677778


Q ss_pred             hcCceEEEc-cCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCc
Q 039504           93 RAGAGVLLM-QKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAI  171 (240)
Q Consensus        93 ~~G~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~  171 (240)
                      ..|...+.. .+.++..+++.++++++|++.++|+++..+.+.....+..++++|.+++||+++++++.+++.+.+ +++
T Consensus       282 ~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~  360 (562)
T PRK12492        282 VSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNSGGTALVKATAERWEQLT-GCT  360 (562)
T ss_pred             hcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeEEEeccccCCHHHHHHHHHHh-CCc
Confidence            888876655 457899999999999999999999999999887766666778999999999999999999999987 799


Q ss_pred             ccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          172 LGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       172 i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      +++.||+||++.++..+..    ......+++|+|.+++.++|+| +++++++.|+.|||+|+|+.++
T Consensus       361 ~~~~YG~tE~~~~~~~~~~----~~~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g~~Gel~v~g~~~~  423 (562)
T PRK12492        361 IVEGYGLTETSPVASTNPY----GELARLGTVGIPVPGTALKVID-DDGNELPLGERGELCIKGPQVM  423 (562)
T ss_pred             eeeccCccccCceeeecCC----cccccCCccceecCCCEEEEEC-CCCCCCCCCCceEEEEeCCccc
Confidence            9999999999876554321    1123456899999999999999 5689999999999999999876

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.1e-31  Score=219.99  Aligned_cols=211  Identities=27%  Similarity=0.435  Sum_probs=175.2

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ...++++++++|||||||.||++.++|+++......+..    .....++|++++.+|++|.+++...++.++..|++++
T Consensus       131 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~  206 (488)
T PRK09088        131 SIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGV----LGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSIL  206 (488)
T ss_pred             CCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHH----hhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEE
Confidence            445688999999999999999999999998776655443    2345788999999999999999877888999999999


Q ss_pred             EccCCCHHHHHHHHHh--ccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccc
Q 039504          100 LMQKFEIGALLELIQR--HRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG  177 (240)
Q Consensus       100 ~~~~~~~~~~~~~i~~--~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  177 (240)
                      +.+.+++..++..+.+  +++|+++++|+++..+..........++++|.+++||++++.+..+.+.+.  ++++++.||
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v~~~YG  284 (488)
T PRK09088        207 VSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGFG  284 (488)
T ss_pred             EcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh--CCceeeeec
Confidence            9888999999988864  899999999999999987655445567789999999999999888888764  788999999


Q ss_pred             ccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          178 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       178 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      +||++.+.....  .........+++|.|.|+++++|+| +++++++.|+.|||+|+||.++
T Consensus       285 ~TE~~~~~~~~~--~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~  343 (488)
T PRK09088        285 MSEAGTVFGMSV--DCDVIRAKAGAAGIPTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNLS  343 (488)
T ss_pred             ccccccccccCC--CcccccccCCccccCCCCcEEEEEC-CCCCCCcCCCceEEEEECCccc
Confidence            999986543221  1111123457899999999999999 6689999999999999999875

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.2e-31  Score=228.69  Aligned_cols=207  Identities=23%  Similarity=0.225  Sum_probs=166.9

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHH-HHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITS-VAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGA   96 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~-~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~   96 (240)
                      ....+++|+++|+|||||||.||+|.++|.+++.. ......    .+++.++|+++.+.++.|+.+.  .++.++..|+
T Consensus       257 ~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~--~~~~~L~~G~  330 (655)
T PRK03584        257 FEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGL----HCDLGPGDRFFWYTTCGWMMWN--WLVSGLLVGA  330 (655)
T ss_pred             ceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHH----hcCCCCCCEEEEcCCchHHhHH--HHHHHHHcCC
Confidence            34567799999999999999999999999987543 333322    3467889999999998887543  4678899999


Q ss_pred             eEEEccC----CCHHHHHHHHHhccceeeeechHHHHHHHhCCC--CCCCCccchhhhhccCCCCCHHHHHHHHHhCC-C
Q 039504           97 GVLLMQK----FEIGALLELIQRHRVSVAAVVPPLVLALAKNPM--VADYDLSSIRVVLSGAAPLGKELEDALRSRVP-Q  169 (240)
Q Consensus        97 ~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~-~  169 (240)
                      ++++.++    .++..++++++++++|++..+|++++.+.+...  ....+++++|.++++|+++++++.+++.+.++ +
T Consensus       331 t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~  410 (655)
T PRK03584        331 TLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKAD  410 (655)
T ss_pred             EEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEecCCCCHHHHHHHHHHhCCC
Confidence            9998752    589999999999999999999999999876532  23356789999999999999999999999883 5


Q ss_pred             CcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCC
Q 039504          170 AILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP  236 (240)
Q Consensus       170 ~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~  236 (240)
                      ..+.+.||+||++.......    .......+++|.|.++++++|+| ++++++ .|+.|||+|+||
T Consensus       411 ~~~~~~yG~TE~~~~~~~~~----~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~-~g~~GeL~v~gp  471 (655)
T PRK03584        411 VWLASISGGTDICSCFVGGN----PLLPVYRGEIQCRGLGMAVEAWD-EDGRPV-VGEVGELVCTKP  471 (655)
T ss_pred             ceEEeccChHhhhcccccCC----CCCCcCCCccCCCcCCceeEEEC-CCCCCC-CCCceEEEEccC
Confidence            78999999999864332211    11233457899999999999999 668888 799999999996

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=6.3e-31  Score=221.46  Aligned_cols=216  Identities=38%  Similarity=0.586  Sum_probs=173.4

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhc-CCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVD-GENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~-~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      ....++++++++|||||||.||+|.++|.++......... ...........+++++..|++|.+++...++.++..|.+
T Consensus       187 ~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~  266 (541)
T TIGR03205       187 PAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDL  266 (541)
T ss_pred             CCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccHHHHHHHHHHHHHHHhcCCE
Confidence            3456789999999999999999999999998765432211 000011123457889999999998887677889999999


Q ss_pred             EEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccc
Q 039504           98 VLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG  177 (240)
Q Consensus        98 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  177 (240)
                      ++....+++..+++.+++++++++.++|+++..+.+........++++|.++.||+++++++.+++.+.+ +.++++.||
T Consensus       267 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~-~~~~~~~YG  345 (541)
T TIGR03205       267 ISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFFERKT-GLKLKSGWG  345 (541)
T ss_pred             EEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHHHHHHHh-CCCeecccc
Confidence            9888889999999999999999999999999998875444445667899999999999999999999888 789999999


Q ss_pred             ccccccchhhccCCCCCCCCCCCCccccccCCceEEEee-CCCCCCCCCCCCceEEEeCCCCC
Q 039504          178 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVID-PETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       178 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      +||++..+..+..    .....++++|+|.+++.++|++ .+.+++++.|+.|||+|+|+.++
T Consensus       346 ~TE~~~~~~~~~~----~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~  404 (541)
T TIGR03205       346 MTETCSPGTGHPP----EGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVT  404 (541)
T ss_pred             cccCCcccccCCC----CCCCCCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecCCcc
Confidence            9999876554311    1123456899999999988764 26678999999999999998865

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-31  Score=223.45  Aligned_cols=215  Identities=30%  Similarity=0.495  Sum_probs=171.5

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ....++++++++|||||||.||+|.++|.++...........  ..+..++|+++..+|++|..++. .++ .+..|++.
T Consensus       158 ~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~--~~~~~~~d~~l~~~p~~~~~~~~-~~~-~~~~g~~~  233 (528)
T PRK07470        158 AAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADL--MPGTTEQDASLVVAPLSHGAGIH-QLC-QVARGAAT  233 (528)
T ss_pred             ccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHh--ccCCCcccEEEEeccchhHHHHH-HHH-HHhcCceE
Confidence            456778999999999999999999999999865543322211  12457889999999999998886 344 45566665


Q ss_pred             EEcc--CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccc
Q 039504           99 LLMQ--KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGY  176 (240)
Q Consensus        99 v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  176 (240)
                      ++.+  .++++.+++.++++++|++.++|++++.+.+........++++|.++++|+++++++.+++.+.+ +.++++.|
T Consensus       234 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~Y  312 (528)
T PRK07470        234 VLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKL-GKVLVQYF  312 (528)
T ss_pred             EEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHh-CcHHHHhC
Confidence            5543  58999999999999999999999999999987766666778999999999999999999999988 68899999


Q ss_pred             cccccccchhhccCCC--CCC-CCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          177 GMTEAGPVLSMCLGFA--KQP-FPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       177 G~tE~~~~~~~~~~~~--~~~-~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      |+||++..+..+....  ... .....+++|+|.++++++|+| +++++++.|+.|||+|+|+.++
T Consensus       313 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~  377 (528)
T PRK07470        313 GLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGRELPPGETGEICVIGPAVF  377 (528)
T ss_pred             CCcccCCceeecchhhccccccccceeeccCcccCCcEEEEEC-CCCCCCCCCCceEEEEeCCccc
Confidence            9999876554331110  000 122346889999999999999 5689999999999999999875

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=2.7e-31  Score=221.78  Aligned_cols=215  Identities=26%  Similarity=0.347  Sum_probs=179.2

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ....++++++++|||||||.||++.++|.++.........    .+.+..+++++...|++|..++. .++.++..|+++
T Consensus       138 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~-~~~~~l~~g~~~  212 (503)
T PRK04813        138 HAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLE----DFALPEGPQFLNQAPYSFDLSVM-DLYPTLASGGTL  212 (503)
T ss_pred             ccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHH----HcCCCcCceeeecCCcchhHhHH-HHHHHHhcCCEE
Confidence            4466788999999999999999999999999887766655    34568899999999999988876 677889999999


Q ss_pred             EEccC---CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccc
Q 039504           99 LLMQK---FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG  175 (240)
Q Consensus        99 v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  175 (240)
                      +..++   .++..+++.+++++++++..+|++++.+..........++++|.++++|+++++.+.+++.+.|++..+++.
T Consensus       213 v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~  292 (503)
T PRK04813        213 VALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNT  292 (503)
T ss_pred             EEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeC
Confidence            88764   588999999999999999999999988766544445567899999999999999999999999988899999


Q ss_pred             ccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          176 YGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       176 yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      ||+||++..+................++|++.++++++|+| +++++++.|+.|||+|+|+.++
T Consensus       293 yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~  355 (503)
T PRK04813        293 YGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISGPSVS  355 (503)
T ss_pred             cccchheeEEEEEEecccccccCCCCcccccCCCCEEEEEC-CCCCCCCCCCceEEEEeccccc
Confidence            99999875544332211111223445799999999999999 7799999999999999998765

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-31  Score=224.28  Aligned_cols=211  Identities=27%  Similarity=0.412  Sum_probs=172.8

Q ss_pred             CCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc
Q 039504           23 PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ  102 (240)
Q Consensus        23 ~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~  102 (240)
                      ++|.++++|||||||.||+|.++|.++.........    .+.+.++|++++.+|++|.+++...++.++..|.++++..
T Consensus       175 ~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~  250 (534)
T PRK05852        175 RPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIIT----GYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPA  250 (534)
T ss_pred             CCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHH----HhCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCC
Confidence            467899999999999999999999999887776655    3457889999999999999999877889999999988864


Q ss_pred             --CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCC--CCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccc
Q 039504          103 --KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVA--DYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM  178 (240)
Q Consensus       103 --~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~--~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  178 (240)
                        .+++..+++.++++++|++.++|+++..|.+.....  ...++++|.++++|+++++++++.+.+.| +.++++.||+
T Consensus       251 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~-~~~v~~~YG~  329 (534)
T PRK05852        251 RGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEF-AAPVVCAFGM  329 (534)
T ss_pred             CcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHHh-CCChhhccCc
Confidence              478999999999999999999999999998765432  23467899999999999999999999998 7899999999


Q ss_pred             cccccchhhccCCCC---CCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          179 TEAGPVLSMCLGFAK---QPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       179 tE~~~~~~~~~~~~~---~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ||++..+........   .......+..|+ .++++++|+| +++++++.|+.|||+|+|+.+++
T Consensus       330 tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~v~~  392 (534)
T PRK05852        330 TEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIRIVG-SDGLPLPAGAVGEVWLRGTTVVR  392 (534)
T ss_pred             cccchhhhcCCccccccccCcccccccCCC-CCCCeEEEEC-CCCCCCCCCCceEEEEecCcccc
Confidence            999876554321100   001112233344 7999999999 55899999999999999998763

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-31  Score=225.50  Aligned_cols=216  Identities=22%  Similarity=0.257  Sum_probs=167.2

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ...++++++++|||||||.||+|.++|.++..............+.+..+++.+..+|++|..++. ..+.++..|++++
T Consensus       165 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~-~~~~~l~~G~~~v  243 (540)
T PRK05857        165 DQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLW-WILTCLMHGGLCV  243 (540)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHH-HHHHHhhcceeEE
Confidence            356789999999999999999999999998765443221111123566788999999999999887 5677888888877


Q ss_pred             EccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccc
Q 039504          100 LMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT  179 (240)
Q Consensus       100 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  179 (240)
                      + .+.++..+++.+++++++++.++|++++.+.+........++++|.+++||++++....++ .+.+ +.++++.||+|
T Consensus       244 ~-~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~-~~~~-g~~i~~~YG~T  320 (540)
T PRK05857        244 T-GGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVRF-IEAT-GVRTAQVYGLS  320 (540)
T ss_pred             e-cCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHHH-HHHh-CCeeecccCCC
Confidence            6 4568899999999999999999999999999877666667889999999999998877754 4566 78999999999


Q ss_pred             ccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCC-----CCCCCceEEEeCCCCC
Q 039504          180 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASL-----PHNQPGEICIRGPQIM  239 (240)
Q Consensus       180 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~-----~~g~~Gel~v~~~~~~  239 (240)
                      |++..................+++|+|.++++++|+|++...++     +.|+.|||+|+||.++
T Consensus       321 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~  385 (540)
T PRK05857        321 ETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANM  385 (540)
T ss_pred             cCCceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchh
Confidence            99754332211110101224578999999999999996544333     4578999999999865

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=1.7e-31  Score=217.44  Aligned_cols=209  Identities=33%  Similarity=0.395  Sum_probs=177.8

Q ss_pred             CCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEE
Q 039504           21 IEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLL  100 (240)
Q Consensus        21 ~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~  100 (240)
                      ..++++++++|||||||.||++.++|+++.........    .+.++++|+++...|++|..++. .++.++..|+++++
T Consensus       117 ~~~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~-~~~~~l~~g~~~~~  191 (408)
T TIGR01733       117 SGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLAR----RYGLDPDDRVLQFASLSFDASVE-EIFGTLLAGATLVV  191 (408)
T ss_pred             CCCCCcEEEEEcCCCCCCCCEEEeccHHHHHHHHHHHH----hcCCCCCceEEEecCCccchhHH-HHHHHHhCCCEEEE
Confidence            34788999999999999999999999999888877766    44577899999999999998886 68899999999988


Q ss_pred             ccCC---CHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccc
Q 039504          101 MQKF---EIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG  177 (240)
Q Consensus       101 ~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  177 (240)
                      .++.   .+..+.+.+++++++.+.++|.+++.+.+...   ..++++|.++++|+++++++++.+.+.++++.+++.||
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~---~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG  268 (408)
T TIGR01733       192 PPEDEERDAALLAALIAEHPVTVLNLTPSLLALLAAALP---PALASLRLVILGGEALTPALVDRWRARGPGARLINLYG  268 (408)
T ss_pred             cChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhh---hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEeccc
Confidence            7653   36899999999999999999999999998754   46778999999999999999999999996689999999


Q ss_pred             ccccccchhhccCCCCCCCCC-CCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          178 MTEAGPVLSMCLGFAKQPFPT-KSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       178 ~tE~~~~~~~~~~~~~~~~~~-~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      +||++.++....... ..... .+.++|+|.++++++|+|++ +++++.|+.|||+|+|+.++
T Consensus       269 ~tE~g~~~~~~~~~~-~~~~~~~~~~~G~~~~~~~~~i~~~~-~~~~~~g~~Gel~v~~~~~~  329 (408)
T TIGR01733       269 PTETTVWSTATLVDA-DDAPRESPVPIGRPLANTRLYVLDDD-LRPVPVGVVGELYIGGPGVA  329 (408)
T ss_pred             CCceEEEEEEEEcCc-cccCCccccccCcccCCceEEEECCC-CCCCCCCCceEEEecCcccc
Confidence            999987664321111 11111 26789999999999999966 89999999999999998876

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=5.9e-31  Score=221.51  Aligned_cols=202  Identities=31%  Similarity=0.487  Sum_probs=173.2

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ...++++++++|||||||.||+|.++|.++.........    .+++++++++++.+|++|..++. .++.++..|++++
T Consensus       176 ~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~----~~~~~~~~~~l~~~pl~~~~~~~-~~~~~l~~G~~~~  250 (542)
T PRK06155        176 AVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAE----DLEIGADDVLYTTLPLFHTNALN-AFFQALLAGATYV  250 (542)
T ss_pred             CCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHH----hcCCCCCCEEEEecCHHHHHHHH-HHHHHHHcCceEE
Confidence            456789999999999999999999999999776655444    44678899999999999999987 5689999999999


Q ss_pred             EccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccc
Q 039504          100 LMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT  179 (240)
Q Consensus       100 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  179 (240)
                      +.+++++..+++.+++++++++..+|+++..|.+..........++|.++.+|  +++++.+++++.+ +.++++.||+|
T Consensus       251 ~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~-~~~v~~~YG~t  327 (542)
T PRK06155        251 LEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPG--VPAALHAAFRERF-GVDLLDGYGST  327 (542)
T ss_pred             eeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcC--CCHHHHHHHHHHc-CCCEEeeeccc
Confidence            99889999999999999999999999999999987766655667788766544  6789999999988 78999999999


Q ss_pred             ccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCC
Q 039504          180 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP  236 (240)
Q Consensus       180 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~  236 (240)
                      |++.++..+      ......+++|.+.++++++|+| +++++++.|+.|||+|+|+
T Consensus       328 E~~~~~~~~------~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gei~v~~~  377 (542)
T PRK06155        328 ETNFVIAVT------HGSQRPGSMGRLAPGFEARVVD-EHDQELPDGEPGELLLRAD  377 (542)
T ss_pred             ccCccccCC------CCCCCCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEEecC
Confidence            998765442      1234567899999999999999 5689999999999999998

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-30  Score=221.14  Aligned_cols=218  Identities=28%  Similarity=0.417  Sum_probs=174.9

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ....++++++++|||||||.||+|.++|.++..........   .....++|+++..+|++|++|+...++.++..|+++
T Consensus       204 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~  280 (567)
T PRK06178        204 PPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAV---AVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATL  280 (567)
T ss_pred             CCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHH---hccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceE
Confidence            34567899999999999999999999999988765443321   134678899999999999999865678889999999


Q ss_pred             EEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhc--cCCCCCHHHHHHHHHhCCCCcccccc
Q 039504           99 LLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLS--GAAPLGKELEDALRSRVPQAILGQGY  176 (240)
Q Consensus        99 v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~--~G~~~~~~~~~~~~~~~~~~~i~~~y  176 (240)
                      ++.+++++..+++.+++++++++..+|..+..+..........++++|.+..  .++++++++.+.+++.++...+.+.|
T Consensus       281 ~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~Y  360 (567)
T PRK06178        281 VLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAW  360 (567)
T ss_pred             EEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchheeeeeccccccCCHHHHHHHHHHhCCccccccc
Confidence            9999999999999999999999999999999988765555556667776543  45899999999999998433344579


Q ss_pred             cccccccchhhccCCCCCC--CCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          177 GMTEAGPVLSMCLGFAKQP--FPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       177 G~tE~~~~~~~~~~~~~~~--~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      |+||++..+..........  ....+.++|+|.|+++++|+|++++++++.|+.|||+|+|+.++
T Consensus       361 G~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~  425 (567)
T PRK06178        361 GMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLL  425 (567)
T ss_pred             ccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEEECCccc
Confidence            9999876544321111111  12345679999999999999988899999999999999999876

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=99.98  E-value=3e-32  Score=215.58  Aligned_cols=228  Identities=27%  Similarity=0.434  Sum_probs=182.0

Q ss_pred             CcchhhHhhcCCCC-CCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHH
Q 039504            2 CLHFTVLSEADEDQ-IPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFH   80 (240)
Q Consensus         2 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~   80 (240)
                      +++|+++++..... .++++..|+|+++|+|||||||.||||+++|.|+.+.+........   .+.+.|+++.++|+.|
T Consensus       214 i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~---~lg~~D~yi~yLPLAH  290 (678)
T KOG1180|consen  214 IISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVP---ELGPKDRYIAYLPLAH  290 (678)
T ss_pred             EEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCc---ccCCCceEEEechHHH
Confidence            35788888876544 4455568999999999999999999999999999999887766432   5789999999999999


Q ss_pred             hhhhHHHHHHHhhcCceEEEccCCCHHHHHHHH--------HhccceeeeechHHHHHHHhCCCCC--------------
Q 039504           81 IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELI--------QRHRVSVAAVVPPLVLALAKNPMVA--------------  138 (240)
Q Consensus        81 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i--------~~~~~t~l~~~p~~~~~l~~~~~~~--------------  138 (240)
                      ++.+. .-+.++.-|+.+=+.++.+..+...-|        ..++||++.++|..+.++.+....+              
T Consensus       291 IlEl~-aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~  369 (678)
T KOG1180|consen  291 ILELT-AELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWT  369 (678)
T ss_pred             HHHHH-HHHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence            99998 778999999999887654333222222        3478999999999998876511100              


Q ss_pred             ------------CC---Cc-------------cchhhhhccCCCCCHHHHHHHHHhCCCCcccccccccccccchhhccC
Q 039504          139 ------------DY---DL-------------SSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLG  190 (240)
Q Consensus       139 ------------~~---~~-------------~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~  190 (240)
                                  ..   .+             ..+|.+++||.|++++..+.+...+ .+++...||.||++...+..  
T Consensus       370 aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~-C~Pv~qGYGLTEtca~~tv~--  446 (678)
T KOG1180|consen  370 AYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICF-CCPVLQGYGLTETCAAATVL--  446 (678)
T ss_pred             HHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhc-cccccccccccchhcccEec--
Confidence                        00   00             2589999999999999999999998 78999999999998665553  


Q ss_pred             CCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCC--CceEEEeCCCCC
Q 039504          191 FAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQ--PGEICIRGPQIM  239 (240)
Q Consensus       191 ~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~--~Gel~v~~~~~~  239 (240)
                         +..+...+.+|-|++.++++++|.+++...+.+.  .|||+|+|+.|.
T Consensus       447 ---e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt  494 (678)
T KOG1180|consen  447 ---EPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVT  494 (678)
T ss_pred             ---ChhhcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccC
Confidence               3445566799999999999999998888777666  799999999986

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=99.98  E-value=2.3e-31  Score=227.93  Aligned_cols=230  Identities=29%  Similarity=0.383  Sum_probs=169.4

Q ss_pred             chhhHhhcCCCC-CCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCC-CccccCCcEEEEecchHHh
Q 039504            4 HFTVLSEADEDQ-IPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENP-NLYLTNGDVVLCVLPLFHI   81 (240)
Q Consensus         4 ~~~~l~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~-~~~~~~~d~~l~~~p~~~~   81 (240)
                      +|+++++..... .......|+|+++++|||||||.||||.++|+++............. ...+.++|++++++|++|.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~  278 (660)
T PLN02430        199 SWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHI  278 (660)
T ss_pred             EHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHH
Confidence            466666543221 12233568999999999999999999999999998876654321110 1246789999999999999


Q ss_pred             hhhHHHHHHHhhcCceEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCC------------------------
Q 039504           82 YSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV------------------------  137 (240)
Q Consensus        82 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~------------------------  137 (240)
                      ++... .+.++..|+++.+... ++..+++.++++++|++.++|.+++.+.+....                        
T Consensus       279 ~~~~~-~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
T PLN02430        279 LDRMI-EEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWM  356 (660)
T ss_pred             HHHHH-HHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            99874 4567888998877653 788899999999999999999999877642100                        


Q ss_pred             -------CCCC-------------c-cchhhhhccCCCCCHHHHHHHHHhCCCCcccccccccccccchhhccCCCCCCC
Q 039504          138 -------ADYD-------------L-SSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPF  196 (240)
Q Consensus       138 -------~~~~-------------~-~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~  196 (240)
                             ....             + .++|.+++||+++++++.+.++. +++..+++.||+||++.......    ...
T Consensus       357 ~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~-~~~~~i~~~YG~TE~~~~~~~~~----~~~  431 (660)
T PLN02430        357 NRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRV-TSCAFVVQGYGLTETLGPTTLGF----PDE  431 (660)
T ss_pred             hcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHH-hcCCCeeeecchhhhhhceEeec----ccc
Confidence                   0000             1 47899999999999998766654 43578999999999876554321    111


Q ss_pred             CCCCCccccccCCceEEEee-CCCC-CCCCCCCCceEEEeCCCCCC
Q 039504          197 PTKSGSCGTVVRNAELKVID-PETG-ASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       197 ~~~~~~~G~~~~~~~v~i~d-~~~~-~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ....+++|+|.|+++++|+| ++.+ .+++.+..|||+|+||.+++
T Consensus       432 ~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~  477 (660)
T PLN02430        432 MCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFS  477 (660)
T ss_pred             CCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccc
Confidence            23468899999999999987 3333 55666778999999999874

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=99.98  E-value=1.3e-30  Score=220.31  Aligned_cols=216  Identities=30%  Similarity=0.525  Sum_probs=172.7

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccc---cCCcEEEEecchHHhhhhHHHHHHHhhc
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYL---TNGDVVLCVLPLFHIYSLNSVLLCSLRA   94 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~---~~~d~~l~~~p~~~~~g~~~~~~~~l~~   94 (240)
                      .....++++++++|||||||.||+|.++|.++.................   ...+.+++.+|++|.+++....+.++..
T Consensus       198 ~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~  277 (557)
T PRK07059        198 PVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRT  277 (557)
T ss_pred             CCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhh
Confidence            3456788999999999999999999999999876654332211101111   1245677889999998876556677777


Q ss_pred             CceEEEcc-CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccc
Q 039504           95 GAGVLLMQ-KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILG  173 (240)
Q Consensus        95 G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~  173 (240)
                      |+..++.+ ..++..+++.+++++++++..+|.++..+..........++++|.++.||+++++.+.+++.+.+ +++++
T Consensus       278 g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~  356 (557)
T PRK07059        278 GGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGMAVQRPVAERWLEMT-GCPIT  356 (557)
T ss_pred             cceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEeccccCCHHHHHHHHHHh-CCCee
Confidence            77766554 46899999999999999999999999999987766666778999999999999999999999988 79999


Q ss_pred             ccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          174 QGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       174 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      +.||+||++.++..+..    .......++|+|++++.++|+| +++++++.|+.|||+|+|+.++
T Consensus       357 ~~YG~tE~~~~~~~~~~----~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~  417 (557)
T PRK07059        357 EGYGLSETSPVATCNPV----DATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGEICIRGPQVM  417 (557)
T ss_pred             eccccccccchhhcCCC----CCCCcCCcccCccCCcEEEEEC-CCCCCCCCCCceEEEEeCCccc
Confidence            99999999876554321    1123457899999999999999 6789999999999999998775

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=99.98  E-value=1.3e-30  Score=219.48  Aligned_cols=213  Identities=24%  Similarity=0.406  Sum_probs=170.5

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHH-HHH-hhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLIT-SVA-QQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGA   96 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~-~~~-~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~   96 (240)
                      ....++++++++|||||||.||+|.++|.++.. ... ....    .++++.+|+++...|++|.+++. ..+.++..|+
T Consensus       172 ~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~p~~h~~~~~-~~~~~~~~g~  246 (542)
T PRK06018        172 KTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGD----ALGTSAADTMLPVVPLFHANSWG-IAFSAPSMGT  246 (542)
T ss_pred             ccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhh----hcCCCCCCEEEEecCHHHHhhhH-HHHhhhhcCc
Confidence            345677899999999999999999999987432 221 1111    44678899999999999998886 4567788999


Q ss_pred             eEEEcc-CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccc
Q 039504           97 GVLLMQ-KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG  175 (240)
Q Consensus        97 ~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  175 (240)
                      ++++.. .+++..+++.++++++|++.++|++++.+.+.......+++++|.++++|+++++++++++++ + +.++++.
T Consensus       247 ~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~-~-~~~~~~~  324 (542)
T PRK06018        247 KLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFED-M-GVEVRHA  324 (542)
T ss_pred             eEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHH-h-CCCeEee
Confidence            988864 588999999999999999999999999998877666667789999999999999999999999 7 8999999


Q ss_pred             ccccccccchhhccCCCCCC------CCCCCCccccccCCceEEEeeCCCCCCCCCC--CCceEEEeCCCCC
Q 039504          176 YGMTEAGPVLSMCLGFAKQP------FPTKSGSCGTVVRNAELKVIDPETGASLPHN--QPGEICIRGPQIM  239 (240)
Q Consensus       176 yG~tE~~~~~~~~~~~~~~~------~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g--~~Gel~v~~~~~~  239 (240)
                      ||+||++.+...+.......      ......++|+|.++++++|+| +++++++.+  +.|||+|+|+.++
T Consensus       325 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~  395 (542)
T PRK06018        325 WGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVA  395 (542)
T ss_pred             ecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcc
Confidence            99999987654431111000      011235789999999999999 568888764  6799999998875

>PRK13383 acyl-CoA synthetase; Provisional

Probab=99.98  E-value=7.7e-31  Score=219.72  Aligned_cols=209  Identities=24%  Similarity=0.326  Sum_probs=169.4

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .+++.++++|||||||.||+|.++|... +......... ...++.++|+++..+|++|.+++. ..+.++..|++++..
T Consensus       172 ~~~~~~~il~TSGTTG~PK~v~~s~~~~-~~~~~~~~~~-~~~~~~~~d~~~~~~pl~h~~g~~-~~~~~l~~G~~~~~~  248 (516)
T PRK13383        172 VAAPGRIVLLTSGTTGKPKGVPRAPQLR-SAVGVWVTIL-DRTRLRTGSRISVAMPMFHGLGLG-MLMLTIALGGTVLTH  248 (516)
T ss_pred             CCCCCcEEEECCCCCCCCCeeeecchhh-hhhhhHHhHH-hhhccCCCCeEEEecCCcchhhHH-HHHHHHhcCCEEEEC
Confidence            3456779999999999999999998743 2111111100 134578899999999999999986 567788999999998


Q ss_pred             cCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCC--CCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccc
Q 039504          102 QKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV--ADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT  179 (240)
Q Consensus       102 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  179 (240)
                      ..+++..+++.+++++++.+.++|+++..+......  ....++++|.+++||+++++++++++.+.| +..+++.||+|
T Consensus       249 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~t  327 (516)
T PRK13383        249 RHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTY-GDILYNGYGST  327 (516)
T ss_pred             CCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHc-Cchhhhccccc
Confidence            889999999999999999999999999999876432  123567899999999999999999999999 78899999999


Q ss_pred             ccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          180 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       180 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      |++..+..+.    .......+++|+|.|+++++|+| +++++++.|+.|||+|+|+.++
T Consensus       328 E~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~  382 (516)
T PRK13383        328 EVGIGALATP----ADLRDAPETVGKPVAGCPVRILD-RNNRPVGPRVTGRIFVGGELAG  382 (516)
T ss_pred             ccccceeccc----cccccCCCcccCCCCCcEEEEEC-CCCCCCCCCCceEEEEecCccc
Confidence            9985543321    11223457899999999999999 6689999999999999998875

>PRK05691 peptide synthase; Validated

Probab=99.97  E-value=4.6e-31  Score=259.44  Aligned_cols=210  Identities=27%  Similarity=0.383  Sum_probs=180.4

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ...++++++++|||||||.||||.++|+++...+.+...    .+++.++|+++...|+.|..+.. .++.++..|++++
T Consensus      1269 ~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~fd~s~~-~~~~~L~~G~~l~ 1343 (4334)
T PRK05691       1269 HLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQA----TYALDDSDVLMQKAPISFDVSVW-ECFWPLITGCRLV 1343 (4334)
T ss_pred             CCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHH----hcCCCCCCEEEEeCCccHHHHHH-HHHHHHhCCCEEE
Confidence            456789999999999999999999999999888877665    45678999999999999888877 6788999999999


Q ss_pred             Ecc---CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccc
Q 039504          100 LMQ---KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGY  176 (240)
Q Consensus       100 ~~~---~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  176 (240)
                      +.+   ..++..+++.++++++|++.++|++++.+.....  ...++++|.+++|||++++++.+++.+.+++.+++|.|
T Consensus      1344 i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 1421 (4334)
T PRK05691       1344 LAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL--AAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRY 1421 (4334)
T ss_pred             EcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc--cccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCC
Confidence            875   4789999999999999999999999999987533  23567899999999999999999999999889999999


Q ss_pred             cccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          177 GMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       177 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      |+||++..+.....   ........++|+|++++.++|+| +.++++|.|++|||+|+|+++++
T Consensus      1422 G~TE~~~~~~~~~~---~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~G~~GEL~i~G~~v~~ 1481 (4334)
T PRK05691       1422 GPTETAINVTHWQC---QAEDGERSPIGRPLGNVLCRVLD-AELNLLPPGVAGELCIGGAGLAR 1481 (4334)
T ss_pred             CcChheeeeeeeec---ccccCCCCcccceeCCCEEEEEC-CCCCCCCCCCceEEEecCcccch
Confidence            99999865543211   11223456899999999999999 66899999999999999999874

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=99.97  E-value=3.5e-30  Score=215.86  Aligned_cols=206  Identities=29%  Similarity=0.375  Sum_probs=169.9

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ....++++++++|||||||.||++.++|.++.........    ...+.+++++++.+|++|..+....++.++..|+++
T Consensus       168 ~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~  243 (517)
T PRK08008        168 PPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAW----QCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATF  243 (517)
T ss_pred             CCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhh----hcCCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEE
Confidence            3456789999999999999999999999998765432222    224678999999999999887776788899999999


Q ss_pred             EEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccc
Q 039504           99 LLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM  178 (240)
Q Consensus        99 v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  178 (240)
                      ++.+.+++..+++.+++++++++.++|++++.+.............+|.+..+ .++++++++.+.+.+ ++++++.||+
T Consensus       244 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~YG~  321 (517)
T PRK08008        244 VLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFY-LNLSDQEKDAFEERF-GVRLLTSYGM  321 (517)
T ss_pred             EEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEe-cCCCHHHHHHHHHHh-CCeEEeeccc
Confidence            99999999999999999999999999999999887655444445677877665 478999999999988 7999999999


Q ss_pred             cccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeC
Q 039504          179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRG  235 (240)
Q Consensus       179 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~  235 (240)
                      ||++..+....    ........++|+|.++++++|+| +++++++.|+.|||+|+|
T Consensus       322 tE~~~~~~~~~----~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~v~g  373 (517)
T PRK08008        322 TETIVGIIGDR----PGDKRRWPSIGRPGFCYEAEIRD-DHNRPLPAGEIGEICIKG  373 (517)
T ss_pred             cccccccccCC----ccccccCCccccCCCCcEEEEEC-CCCCCCCCCCcceEEEeC
Confidence            99975444321    11223456899999999999999 678999999999999998

>PRK12582 acyl-CoA synthetase; Provisional

Probab=99.97  E-value=6.5e-31  Score=224.53  Aligned_cols=204  Identities=23%  Similarity=0.274  Sum_probs=160.2

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCcccc---CCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLT---NGDVVLCVLPLFHIYSLNSVLLCSLRAGA   96 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~---~~d~~l~~~p~~~~~g~~~~~~~~l~~G~   96 (240)
                      ...++|+++++|||||||.||+|.++|.++...........    ...   ..++++..+|++|.+++...++.++..|+
T Consensus       216 ~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~----~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~  291 (624)
T PRK12582        216 AITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLR----PREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGG  291 (624)
T ss_pred             cCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhc----cccCCCCCceEEEechHHHHHhHHHHHHHHHhCce
Confidence            35678999999999999999999999999987765543311    222   35789999999999998766778899999


Q ss_pred             eEEEccC-CCH---HHHHHHHHhccceeeeechHHHHHHHhCCCCC----CCCccchhhhhccCCCCCHHHHHHHHHhC-
Q 039504           97 GVLLMQK-FEI---GALLELIQRHRVSVAAVVPPLVLALAKNPMVA----DYDLSSIRVVLSGAAPLGKELEDALRSRV-  167 (240)
Q Consensus        97 ~~v~~~~-~~~---~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~----~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-  167 (240)
                      ++++.++ +++   ..+++.++++++|++.++|.+++.|.+.....    ...++++|.+++||+++++++.+++++.+ 
T Consensus       292 tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~  371 (624)
T PRK12582        292 TLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLYERMQALAV  371 (624)
T ss_pred             EEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCCCCCHHHHHHHHHHHH
Confidence            9988753 333   45677788999999999999999887643322    12457899999999999999999998863 


Q ss_pred             ---C-CCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          168 ---P-QAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       168 ---~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                         + ++++++.||+||++.++....     ......+++|+|+|+++++|+        +.|+.|||+|+||.+++
T Consensus       372 ~~~g~~~~l~~~YG~TE~~~~~~~~~-----~~~~~~~svG~p~pg~~v~i~--------~~G~~GEl~vrg~~v~~  435 (624)
T PRK12582        372 RTTGHRIPFYTGYGATETAPTTTGTH-----WDTERVGLIGLPLPGVELKLA--------PVGDKYEVRVKGPNVTP  435 (624)
T ss_pred             hhcCCCceEEeccccccccceeeccc-----CCCCCCCCCCcCCCCcEEEEc--------cCCCceEEEEECCcccc
Confidence               2 367999999999986554221     112446789999999999986        35888999999998863

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=2.1e-30  Score=219.71  Aligned_cols=230  Identities=23%  Similarity=0.353  Sum_probs=176.2

Q ss_pred             chhhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhh
Q 039504            4 HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS   83 (240)
Q Consensus         4 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g   83 (240)
                      .|+++.+............++++++++|||||||.||+|.++|.++.........  ...+++.+++++++.+|++|.++
T Consensus       161 ~~~~l~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~--~~~~~~~~~~~~l~~~pl~h~~g  238 (576)
T PRK05620        161 SYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRT--TDSLAVTHGESFLCCVPIYHVLS  238 (576)
T ss_pred             cHHHHhhcCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhh--hhhcCCCCCCeEEEeCChHHhhh
Confidence            3566665443333334466789999999999999999999999998654432211  11346788999999999999999


Q ss_pred             hHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHH
Q 039504           84 LNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDA  162 (240)
Q Consensus        84 ~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~  162 (240)
                      +. ..+.++..|.++++.. .+++..+++.++++++++++++|+++..+............++|.++++|+++++++.++
T Consensus       239 ~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~  317 (576)
T PRK05620        239 WG-VPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKA  317 (576)
T ss_pred             hH-HHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHH
Confidence            87 5678888999988875 589999999999999999999999999887654333333457999999999999999999


Q ss_pred             HHHhCCCCcccccccccccccchhhccCCCC---CCCCCCCCccccccCCceEEEeeCCCCCCCC--CCCCceEEEeCCC
Q 039504          163 LRSRVPQAILGQGYGMTEAGPVLSMCLGFAK---QPFPTKSGSCGTVVRNAELKVIDPETGASLP--HNQPGEICIRGPQ  237 (240)
Q Consensus       163 ~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~---~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~--~g~~Gel~v~~~~  237 (240)
                      +++.+ ++++++.||+||++..+........   ........++|++.++++++|+| + +++++  +++.|||+|+|+.
T Consensus       318 ~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~  394 (576)
T PRK05620        318 WEERY-GVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNW  394 (576)
T ss_pred             HHHHh-CCceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCc
Confidence            99988 7899999999999865543311000   00011234789999999999999 4 66664  5789999999998


Q ss_pred             CC
Q 039504          238 IM  239 (240)
Q Consensus       238 ~~  239 (240)
                      ++
T Consensus       395 ~~  396 (576)
T PRK05620        395 VT  396 (576)
T ss_pred             cc
Confidence            76

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.97  E-value=3.5e-30  Score=215.45  Aligned_cols=208  Identities=31%  Similarity=0.412  Sum_probs=169.9

Q ss_pred             CCCCCcEEEecCCCCCCCCceeeeehHHHHHHH---HhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           21 IEPDDPVALPFSSGTTGLPKGVVLTHKSLITSV---AQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        21 ~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~---~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      ..++++++++|||||||.||+|.++|.......   .....    .+++.++++++...|++|..+.. ..+.++..|++
T Consensus       149 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~p~~~~~~~~-~~~~~~~~g~~  223 (509)
T PRK12406        149 PPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRAL----IYGLKPGIRALLTGPLYHSAPNA-YGLRAGRLGGV  223 (509)
T ss_pred             CCCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhh----hcCCCCCceEEEEeCCcccchHH-HHHHHHhhheE
Confidence            356899999999999999999998766543322   22222    45678999999999999987765 44556788999


Q ss_pred             EEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCC--CCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccc
Q 039504           98 VLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV--ADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG  175 (240)
Q Consensus        98 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  175 (240)
                      +++.+.+++..+++.+++++++++.++|++++.|+.....  ...+++++|.++.||+++++++++++.+.+ ++.+++.
T Consensus       224 ~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~-~~~~~~~  302 (509)
T PRK12406        224 LVLQPRFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWW-GPVIYEY  302 (509)
T ss_pred             EEEccCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHc-CCcEEee
Confidence            9988889999999999999999999999999999875432  234567899999999999999999999988 7889999


Q ss_pred             ccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          176 YGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       176 yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      ||+||++.++..+.    ......++++|++.+++.++|+| +++++++.|+.|||+++|+.++
T Consensus       303 YG~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~  361 (509)
T PRK12406        303 YGSTESGAVTFATS----EDALSHPGTVGKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGNP  361 (509)
T ss_pred             ccccccCceEecCc----ccccccCCCcCccCCCcEEEEEC-CCCCCCCCCCceEEEEECCccc
Confidence            99999987554331    12223457899999999999999 6689999999999999998764

>PRK05691 peptide synthase; Validated

Probab=99.97  E-value=1.4e-30  Score=256.16  Aligned_cols=212  Identities=24%  Similarity=0.335  Sum_probs=180.9

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ....|++++||+|||||||.||||.++|+++.+...+...    .+++++.|+++...++.+..+.+ .++.++..|+++
T Consensus      3864 ~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~fd~s~~-~~~~~l~~G~~l 3938 (4334)
T PRK05691       3864 IYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVP----YLALSEADVIAQTASQSFDISVW-QFLAAPLFGARV 3938 (4334)
T ss_pred             CCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHH----hcCCCccceEEEecCCchhHHHH-HHHHHHhCCCEE
Confidence            3467899999999999999999999999999998877665    45789999999999999998887 678888899988


Q ss_pred             EEccC---CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccc
Q 039504           99 LLMQK---FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG  175 (240)
Q Consensus        99 v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  175 (240)
                      ++.+.   .++..+++.++++++|++.++|++++.+....   ...++++|.+++|||++++++.++|.+.+++++++|.
T Consensus      3939 ~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~ 4015 (4334)
T PRK05691       3939 EIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED---RQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNA 4015 (4334)
T ss_pred             EEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc---cccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeC
Confidence            88753   68899999999999999999999999887643   2346789999999999999999999998889999999


Q ss_pred             ccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          176 YGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       176 yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ||+||++..+....... ........++|+|++++.+.|+| +.++++|.|.+|||+|+|+.|++
T Consensus      4016 YG~TE~t~~~~~~~~~~-~~~~~~~~~iG~p~~~~~~~v~d-~~~~~~p~g~~GEL~i~G~~v~~ 4078 (4334)
T PRK05691       4016 YGPAECSDDVAFFRVDL-ASTRGSYLPIGSPTDNNRLYLLD-EALELVPLGAVGELCVAGTGVGR 4078 (4334)
T ss_pred             ccCccceeEEEEEEccc-ccccCCcCCCCCccCCCEEEEEC-CCCCCCCCCCceEEEEecccccc
Confidence            99999987655432211 11122345799999999999999 77999999999999999999875

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=99.97  E-value=5.8e-30  Score=216.47  Aligned_cols=215  Identities=27%  Similarity=0.491  Sum_probs=170.9

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCC-cEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNG-DVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~-d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      ....++++++++|||||||.||++.++|.++..........+...-.+.++ ++++...|++|.+++....+.++..|+.
T Consensus       203 ~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  282 (560)
T PRK08751        203 LQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGC  282 (560)
T ss_pred             CCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEecChHHHHHHHHhhhhHhhccce
Confidence            345678999999999999999999999999987765544322111113344 5677889999998876444555555555


Q ss_pred             EE-EccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccc
Q 039504           98 VL-LMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGY  176 (240)
Q Consensus        98 ~v-~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  176 (240)
                      .+ .....++..+++.++++++|++..+|.++..+.+........++++|.+++||+++++++.+.+++.+ ++.+++.|
T Consensus       283 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~-~~~~~~~Y  361 (560)
T PRK08751        283 NHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGGMAVQRSVAERWKQVT-GLTLVEAY  361 (560)
T ss_pred             EEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeeeCCCCCCHHHHHHHHHHh-CCeEEEee
Confidence            44 44568899999999999999999999999999987655556678999999999999999999999988 78899999


Q ss_pred             cccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          177 GMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       177 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      |+||++..+..+..    ......+++|.|.+++.++|+| +++++++.|+.|||+|+|+.++
T Consensus       362 G~tE~~~~~~~~~~----~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~~~~~~  419 (560)
T PRK08751        362 GLTETSPAACINPL----TLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGELCIKGPQVM  419 (560)
T ss_pred             ccccCCCceecccc----cccccCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEEecCccc
Confidence            99999876544321    1123456789999999999999 6789999999999999999775

>PRK06164 acyl-CoA synthetase; Validated

Probab=99.97  E-value=2.4e-30  Score=217.95  Aligned_cols=209  Identities=26%  Similarity=0.378  Sum_probs=171.7

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .++++++++|||||||.||+|.++|.++.........    .+++.+++++++.+|++|.+|+. .++.++..|+++++.
T Consensus       179 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~~  253 (540)
T PRK06164        179 DPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIAR----AYGYDPGAVLLAALPFCGVFGFS-TLLGALAGGAPLVCE  253 (540)
T ss_pred             CCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHH----hcCCCCCCEEEEcCCchhHHHHH-HHHHHHhcCceEEec
Confidence            4578999999999999999999999999888776665    44678999999999999999997 688999999999999


Q ss_pred             cCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccC-CCCCHHHHHHHHHhCCCCcccccccccc
Q 039504          102 QKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGA-APLGKELEDALRSRVPQAILGQGYGMTE  180 (240)
Q Consensus       102 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G-~~~~~~~~~~~~~~~~~~~i~~~yG~tE  180 (240)
                      +.+++..+++.++++++|+++++|+++..|.+. ......++++|.+.++| .+...++.+++.+.  ++++++.||+||
T Consensus       254 ~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~YG~tE  330 (540)
T PRK06164        254 PVFDAARTARALRRHRVTHTFGNDEMLRRILDT-AGERADFPSARLFGFASFAPALGELAALARAR--GVPLTGLYGSSE  330 (540)
T ss_pred             CCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHh-hcccCCCcceeeeeeccCCcchHHHHHHHhhc--CCceecceeecc
Confidence            889999999999999999999999999999887 23345677888876665 45566777777665  788999999999


Q ss_pred             cccchhhccCCCCCCCCCCCCcccccc-CCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          181 AGPVLSMCLGFAKQPFPTKSGSCGTVV-RNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ++..+......  ..........|++. +++.++|+|++++++++.|+.|||||+|++++.
T Consensus       331 ~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~  389 (540)
T PRK06164        331 VQALVALQPAT--DPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMR  389 (540)
T ss_pred             ccceeeccCCC--CCCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEecccccc
Confidence            98765443211  11122234567775 899999999999999999999999999998763

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=99.97  E-value=3.4e-30  Score=220.85  Aligned_cols=221  Identities=20%  Similarity=0.244  Sum_probs=166.0

Q ss_pred             chhhHhhcCC-CCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHH-HhhhcCCCCCccccCCcEEEEecchHHh
Q 039504            4 HFTVLSEADE-DQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSV-AQQVDGENPNLYLTNGDVVLCVLPLFHI   81 (240)
Q Consensus         4 ~~~~l~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~-~~~~~~~~~~~~~~~~d~~l~~~p~~~~   81 (240)
                      .|+++.+... .........++|+++|+|||||||.||+|+++|.+++... .....    .++++++|+++...|+.|+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~  318 (652)
T TIGR01217       243 DLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGL----HCDLGPGDRLFYYTTTGWM  318 (652)
T ss_pred             cHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHh----ccCCCCCcEEEEeCCcchh
Confidence            3555544321 1222334567899999999999999999999999865432 22222    3467899999999999987


Q ss_pred             hhhHHHHHHHhhcCceEEEccC----CCHHHHHHHHHhccceeeeechHHHHHHHhCCC--CCCCCccchhhhhccCCCC
Q 039504           82 YSLNSVLLCSLRAGAGVLLMQK----FEIGALLELIQRHRVSVAAVVPPLVLALAKNPM--VADYDLSSIRVVLSGAAPL  155 (240)
Q Consensus        82 ~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~~~~lr~v~~~G~~~  155 (240)
                      ...  .++.++..|+++++.++    .++..++++++++++|++...|.+++.+.+...  ....++++||.++++|+++
T Consensus       319 ~~~--~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l  396 (652)
T TIGR01217       319 MWN--WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPL  396 (652)
T ss_pred             hhH--HHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEeecCCC
Confidence            532  34588999999998752    378899999999999999888888777765321  2345678999999999999


Q ss_pred             CHHHHHHHHHhCC-CCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEe
Q 039504          156 GKELEDALRSRVP-QAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR  234 (240)
Q Consensus       156 ~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~  234 (240)
                      ++++.+++.+.++ +..+.+.||+||.+......    ........+++|.|.++++++|+| ++++++ .|+.|||+|+
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~----~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~-~g~~GEl~v~  470 (652)
T TIGR01217       397 PPDGFRWVYDEIKADVWLASISGGTDICSCFAGA----NPTLPVHIGEIQAPGLGTAVQSWD-PEGKPV-TGEVGELVCT  470 (652)
T ss_pred             CHHHHHHHHHHhCCCceEEeccCHHHHhccccCC----CCCCCCcCCccCCCcCCCceEEEC-CCCCCC-CCCccEEEEe
Confidence            9999999999874 34577899999975332211    011123456889999999999999 568888 5999999999


Q ss_pred             CC
Q 039504          235 GP  236 (240)
Q Consensus       235 ~~  236 (240)
                      ||
T Consensus       471 gp  472 (652)
T TIGR01217       471 NP  472 (652)
T ss_pred             cC
Confidence            96

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=8.9e-30  Score=215.32  Aligned_cols=212  Identities=28%  Similarity=0.511  Sum_probs=173.0

Q ss_pred             CCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEE
Q 039504           21 IEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLL  100 (240)
Q Consensus        21 ~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~  100 (240)
                      ..++++++++|||||||.||+|.++|.++..........+. ......++.++..+|++|.+++....+..+..|++.++
T Consensus       203 ~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~  281 (560)
T PRK08974        203 LVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYG-PLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLL  281 (560)
T ss_pred             CCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhc-cccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEE
Confidence            56789999999999999999999999999876544332211 11234567788899999998876556667778877655


Q ss_pred             c-cCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccc
Q 039504          101 M-QKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT  179 (240)
Q Consensus       101 ~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  179 (240)
                      . +..++..+++.+++++++++.++|++++.+..........++++|.+++||+++++.+.++|++.+ +.++++.||+|
T Consensus       282 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~t  360 (560)
T PRK08974        282 ITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQQAVAERWVKLT-GQYLLEGYGLT  360 (560)
T ss_pred             ecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecCccCCHHHHHHHHHHh-CCcEEeeeccc
Confidence            4 457889999999999999999999999999887655556678999999999999999999999987 88999999999


Q ss_pred             ccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          180 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       180 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      |++..+..+...    .....+++|+|.|++.++|+| +++++++.|+.|||+|+|+.++
T Consensus       361 E~~~~~~~~~~~----~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~~~~  415 (560)
T PRK08974        361 ECSPLVSVNPYD----LDYYSGSIGLPVPSTEIKLVD-DDGNEVPPGEPGELWVKGPQVM  415 (560)
T ss_pred             ccCceeeccCCC----CcccCCccccCcCCCEEEEEC-CCCCCCCCCCceEEEEecCCcc
Confidence            998766554211    123356899999999999999 5689999999999999999875

>PRK07867 acyl-CoA synthetase; Validated

Probab=99.97  E-value=1.1e-29  Score=213.13  Aligned_cols=205  Identities=26%  Similarity=0.410  Sum_probs=168.1

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ....++++++++|||||||.||++.++|+++.........    .+++.++|+++..+|++|.+++...++.++..|+++
T Consensus       147 ~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~  222 (529)
T PRK07867        147 RVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQ----RFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASI  222 (529)
T ss_pred             ccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHH----hhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceE
Confidence            3456789999999999999999999999999877766555    446788999999999999999876677889999999


Q ss_pred             EEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccc
Q 039504           99 LLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM  178 (240)
Q Consensus        99 v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  178 (240)
                      ++.+++++..+++.++++++|++..+|+.+..+....+.......++|. ++||+++++.. +++.+.+ ++++++.||+
T Consensus       223 ~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~-~~gg~~~~~~~-~~~~~~~-g~~l~~~YG~  299 (529)
T PRK07867        223 ALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRI-VYGNEGAPGDI-ARFARRF-GCVVVDGFGS  299 (529)
T ss_pred             EecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccccceEE-EecCCCChHHH-HHHHHHh-CCcEEEeecc
Confidence            9988899999999999999999999999999888765433333356774 56888877664 6777778 7899999999


Q ss_pred             cccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCC------------CceEEE-eCCCCC
Q 039504          179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQ------------PGEICI-RGPQIM  239 (240)
Q Consensus       179 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~------------~Gel~v-~~~~~~  239 (240)
                      ||++......       .....+++|.|.++  ++|+|++++++++.|+            .|||++ +|+.++
T Consensus       300 TE~~~~~~~~-------~~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~  364 (529)
T PRK07867        300 TEGGVAITRT-------PDTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGF  364 (529)
T ss_pred             cccccccccC-------CCCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCccc
Confidence            9987544321       11234678999998  7888988899999998            999999 998775

>PRK13388 acyl-CoA synthetase; Provisional

Probab=99.97  E-value=1e-29  Score=213.96  Aligned_cols=205  Identities=25%  Similarity=0.313  Sum_probs=163.2

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ...++++++++|||||||.||+|.++|.++.........    .+++.++|+++..+|++|..++...++.++..|++++
T Consensus       146 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v  221 (540)
T PRK13388        146 EVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTE----RFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVA  221 (540)
T ss_pred             CCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHH----HhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEE
Confidence            466799999999999999999999999999877665554    4467899999999999999988766677899999999


Q ss_pred             EccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccc
Q 039504          100 LMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT  179 (240)
Q Consensus       100 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  179 (240)
                      +.+.+++..+++.+++++++++..+|+.+..+............++|. . .|+++.++..+++.+.+ +.++++.||+|
T Consensus       222 ~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~-~-~G~~~~~~~~~~~~~~~-~~~l~~~YG~t  298 (540)
T PRK13388        222 LPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRV-A-FGNEASPRDIAEFSRRF-GCQVEDGYGSS  298 (540)
T ss_pred             ECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccccccceEE-E-ECCCCCHHHHHHHHHHh-CCceecccccc
Confidence            988899999999999999999999999999888765433222335553 2 36667888889999988 78999999999


Q ss_pred             ccccchhhccCCCCCCCCCCCCccccccCCceEE-----------EeeCCCCCCC-CCCCCceEEEe-CCCCC
Q 039504          180 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELK-----------VIDPETGASL-PHNQPGEICIR-GPQIM  239 (240)
Q Consensus       180 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~-----------i~d~~~~~~~-~~g~~Gel~v~-~~~~~  239 (240)
                      |++.++...       .....+++|+|.+++++.           ++| ++++++ +.++.|||+++ |+.++
T Consensus       299 E~~~~~~~~-------~~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~~~~~~GEl~v~~g~~~~  363 (540)
T PRK13388        299 EGAVIVVRE-------PGTPPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALLNADEAIGELVNTAGAGFF  363 (540)
T ss_pred             cccceeecC-------CCCCCCCCCCCCCCcEEEcCCCCccccceecc-CccccccCCCcceEEEEecCCccc
Confidence            998655432       123457899999997642           444 445555 45678999998 88876

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.97  E-value=1.2e-29  Score=229.86  Aligned_cols=204  Identities=29%  Similarity=0.544  Sum_probs=171.9

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ...++|+++++|||||||.||+|.++|+++.........    .++..++|++++.+|++|.+++...++.++..|.+++
T Consensus       789 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~  864 (1140)
T PRK06814        789 NRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAA----RIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVF  864 (1140)
T ss_pred             CCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHH----hhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEE
Confidence            357899999999999999999999999999887776655    4467889999999999999998667888999999998


Q ss_pred             EccC-CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccc
Q 039504          100 LMQK-FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM  178 (240)
Q Consensus       100 ~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  178 (240)
                      +.++ .+.+.+.+.++++++|++..+|++++.+.+..  ...+++++|.+++||+++++++++.+.+.+ +.++++.||+
T Consensus       865 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~  941 (1140)
T PRK06814        865 LYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDFRSLRYVFAGAEKVKEETRQTWMEKF-GIRILEGYGV  941 (1140)
T ss_pred             EecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccccceeEEEEcCCcCCHHHHHHHHHHh-CCcEEecccc
Confidence            8764 67788899999999999999999999887753  234567899999999999999999999998 7899999999


Q ss_pred             cccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       179 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ||++..+..+.     ......+++|+|.|++++++++.+ +    .|+.|||+|+|+.+++
T Consensus       942 TE~~~~~~~~~-----~~~~~~~~vG~p~~g~~~~~~~~~-~----~~~~Gel~v~g~~~~~  993 (1140)
T PRK06814        942 TETAPVIALNT-----PMHNKAGTVGRLLPGIEYRLEPVP-G----IDEGGRLFVRGPNVML  993 (1140)
T ss_pred             ccccceEEecC-----CCCCCCCcCCccCCCCeEEEeecC-C----CCCceEEEEeCCCcch
Confidence            99987654431     122346789999999999998732 2    4678999999998763

>PRK13390 acyl-CoA synthetase; Provisional

Probab=99.97  E-value=5.1e-30  Score=214.08  Aligned_cols=207  Identities=25%  Similarity=0.379  Sum_probs=161.9

Q ss_pred             CcEEEecCCCCCCCCceeeee--hHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc
Q 039504           25 DPVALPFSSGTTGLPKGVVLT--HKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ  102 (240)
Q Consensus        25 ~~~~i~~TSGtTG~pk~v~~s--~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~  102 (240)
                      +.++++|||||||.||+|.++  |.++..............+.+..+|+++..+|++|.+++.. ....+..|+++++.+
T Consensus       149 ~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~-~~~~~~~g~~~~~~~  227 (501)
T PRK13390        149 CGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRW-CSMVHALGGTVVLAK  227 (501)
T ss_pred             ccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHH-HHHHHhcCceEEEcC
Confidence            569999999999999999964  44443221110000001335688999999999999988752 334567899999988


Q ss_pred             CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCC--CCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccccc
Q 039504          103 KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV--ADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE  180 (240)
Q Consensus       103 ~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE  180 (240)
                      .+++..+++.+++++++++.++|+++..+......  ....++++|.++.+|+++++++.+.+++.+ +..+++.||+||
T Consensus       228 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~-~~~~~~~YG~tE  306 (501)
T PRK13390        228 RFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWL-GPIVYEYYSSTE  306 (501)
T ss_pred             CcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhc-CCceeeeecccc
Confidence            89999999999999999999999999998875432  234567899999999999999999999988 678999999999


Q ss_pred             cccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      ++.++....    .......+++|+|.++ .++|+| +++++++.|++|||+|+|+.++
T Consensus       307 ~~~~~~~~~----~~~~~~~~~~G~~~~g-~~~i~d-~~~~~~~~g~~Gel~v~~~~~~  359 (501)
T PRK13390        307 AHGMTFIDS----PDWLAHPGSVGRSVLG-DLHICD-DDGNELPAGRIGTVYFERDRLP  359 (501)
T ss_pred             cCceEEecc----hhhccCCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecCCcc
Confidence            986443221    1112345689999999 799999 7789999999999999999875

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.97  E-value=5.9e-31  Score=201.11  Aligned_cols=215  Identities=28%  Similarity=0.381  Sum_probs=188.5

Q ss_pred             CCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhH-HHHHHHhhc
Q 039504           16 IPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLN-SVLLCSLRA   94 (240)
Q Consensus        16 ~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~-~~~~~~l~~   94 (240)
                      .+..+.+++++++...+.||||.||.++.+|.....+++....    .+++.+.+++++.+|..|-+.+. -..+..+..
T Consensus       181 ~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaE----iC~~~~~tvyL~~LP~AHNfplssPG~LGv~~a  256 (542)
T COG1021         181 TPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAE----ICGFDQQTVYLCALPAAHNFPLSSPGALGVFLA  256 (542)
T ss_pred             CcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhh----hhCcCccceEEEecccccCCCCCCcchhheeee
Confidence            3456778889999999999999999999999998887766555    88999999999999999987765 346788999


Q ss_pred             CceEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccc
Q 039504           95 GAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ  174 (240)
Q Consensus        95 G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  174 (240)
                      |+++|+.++.+++..+.+|+++++|+...+|.....+++.++.....+++||++-+||..+++.+.+++...+ ++.+-.
T Consensus       257 gG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~l-gC~LQQ  335 (542)
T COG1021         257 GGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVL-GCQLQQ  335 (542)
T ss_pred             ccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhh-CchHHH
Confidence            9999999999999999999999999999999999999999999899999999999999999999999999999 999999


Q ss_pred             cccccccccchhhccCCCCCCCCCCCCcccccc-CCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          175 GYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVV-RNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       175 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      .|||+|.-.    |....+++........|+|+ |.-+++|+| ++|++|++||+|+|.++||-.++
T Consensus       336 VFGMAEGLv----nyTRLDDp~E~i~~TQGrPlsP~DEvrvvD-~dg~pv~pGE~G~LltRGPYTir  397 (542)
T COG1021         336 VFGMAEGLV----NYTRLDDPPEIIIHTQGRPLSPDDEVRVVD-ADGNPVAPGEVGELLTRGPYTIR  397 (542)
T ss_pred             Hhhhhhhhh----cccccCCchHheeecCCCcCCCcceeEEec-CCCCCCCCCCcceeeecCCeeee
Confidence            999999853    21123333444557889999 788899999 77999999999999999997553

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=5e-29  Score=208.18  Aligned_cols=210  Identities=30%  Similarity=0.434  Sum_probs=167.5

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHH--hhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVA--QQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~--~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ..++.++++|||||||.||+|.+++.++.....  ..............++++++..|++|..++. ..+.++..|++++
T Consensus       138 ~~~~~a~i~~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~~~~g~~~~  216 (502)
T PRK08276        138 DETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLR-FGMSALALGGTVV  216 (502)
T ss_pred             CCCcceEEEECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHH-HHHHHHhccceEE
Confidence            456789999999999999999988766543221  1111000011235678999999999998876 4567899999999


Q ss_pred             EccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCC--CCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccc
Q 039504          100 LMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV--ADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG  177 (240)
Q Consensus       100 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  177 (240)
                      +.+.+++..+++.++++++|++.++|+++..+.+....  ...+++++|.++++|++++.++.+++.+.+ +..+++.||
T Consensus       217 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~-~~~~~~~yG  295 (502)
T PRK08276        217 VMEKFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWW-GPIIHEYYA  295 (502)
T ss_pred             EcCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHh-CcHhhhhcc
Confidence            98889999999999999999999999999999886543  234578999999999999999999999988 788999999


Q ss_pred             ccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          178 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       178 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      +||++.++....    .......+++|+|+ +..++|+| +++++++.|+.|||+|+|+.++
T Consensus       296 ~tE~~~~~~~~~----~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~  351 (502)
T PRK08276        296 SSEGGGVTVITS----EDWLAHPGSVGKAV-LGEVRILD-EDGNELPPGEIGTVYFEMDGYP  351 (502)
T ss_pred             cccccceeEecC----ccccccCCCcceec-ccEEEEEC-CCCCCCcCCCceEEEEECCCcc
Confidence            999987554431    12223456889999 88999999 5689999999999999998765

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=2.7e-29  Score=211.74  Aligned_cols=216  Identities=27%  Similarity=0.350  Sum_probs=169.3

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCC-cEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNG-DVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~-d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      ....++++++++|||||||.||++.++|.++.........    ..++.++ |++++.+|++|..++...++.++..|++
T Consensus       147 ~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~----~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~  222 (545)
T PRK07768        147 VETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFV----AAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAE  222 (545)
T ss_pred             CCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHH----hcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCce
Confidence            3456789999999999999999999999999887766555    3345665 8999999999999988667788999999


Q ss_pred             EEEccC----CCHHHHHHHHHhccceeeeechHHHHHHHhCC----CCCCCCccchhhhhccCCCCCHHHHHHHHHh---
Q 039504           98 VLLMQK----FEIGALLELIQRHRVSVAAVVPPLVLALAKNP----MVADYDLSSIRVVLSGAAPLGKELEDALRSR---  166 (240)
Q Consensus        98 ~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~----~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~---  166 (240)
                      ++..++    .++..+++.+++++++++.+.|..+..+....    .....+++++|.++.+|+++++++.+++.+.   
T Consensus       223 ~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~  302 (545)
T PRK07768        223 LVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGAR  302 (545)
T ss_pred             EEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHHHHHHHHHh
Confidence            888754    37888999999999999877777766655432    1223567789999999999999999999874   


Q ss_pred             C--CCCcccccccccccccchhhccCCCC---------------------CCCCCCCCccccccCCceEEEeeCCCCCCC
Q 039504          167 V--PQAILGQGYGMTEAGPVLSMCLGFAK---------------------QPFPTKSGSCGTVVRNAELKVIDPETGASL  223 (240)
Q Consensus       167 ~--~~~~i~~~yG~tE~~~~~~~~~~~~~---------------------~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~  223 (240)
                      |  +...+++.||+||++..+........                     ........++|+|.++++++|+| ++++++
T Consensus       303 ~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~  381 (545)
T PRK07768        303 FGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVL  381 (545)
T ss_pred             cCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCC
Confidence            4  12359999999999865543211100                     00012345799999999999999 678999


Q ss_pred             CCCCCceEEEeCCCCC
Q 039504          224 PHNQPGEICIRGPQIM  239 (240)
Q Consensus       224 ~~g~~Gel~v~~~~~~  239 (240)
                      ++|+.|||+|+|+.++
T Consensus       382 ~~g~~Gel~v~~~~~~  397 (545)
T PRK07768        382 PPRGVGVIELRGESVT  397 (545)
T ss_pred             CCCCEEEEEEccCccc
Confidence            9999999999998876

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.97  E-value=1.3e-29  Score=207.14  Aligned_cols=206  Identities=22%  Similarity=0.254  Sum_probs=157.5

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ..++++++.+++||||||.||++.++|.++..........+. .++++++|++++..++.+..+.+...+.++..|++++
T Consensus        71 ~~~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~-~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  149 (422)
T TIGR02155        71 AVPREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIR-AAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVV  149 (422)
T ss_pred             CCChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHH-HcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEE
Confidence            345677889999999999999999999998665433222111 3477899999887665544444434567788899998


Q ss_pred             EccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCC--ccchhhhhccCCCCCHHHHHHHHHhCCCCccccccc
Q 039504          100 LMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYD--LSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG  177 (240)
Q Consensus       100 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~--~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  177 (240)
                      ..+..+++.+++.|++++++++.++|+++..|++.....+..  ..++|.++++||++++++++.+++.| ++++++.||
T Consensus       150 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~-g~~v~~~YG  228 (422)
T TIGR02155       150 PISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARL-GMKATDIYG  228 (422)
T ss_pred             ecCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHh-CCceEeccc
Confidence            887778899999999999999999999999988754433322  34799999999999999999999999 789999999


Q ss_pred             cccccc--chhhccCCCCCCCCCCCCcccccc--CCceEEEeeCCCCCCCCCCCCceEEEeCCC
Q 039504          178 MTEAGP--VLSMCLGFAKQPFPTKSGSCGTVV--RNAELKVIDPETGASLPHNQPGEICIRGPQ  237 (240)
Q Consensus       178 ~tE~~~--~~~~~~~~~~~~~~~~~~~~G~~~--~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~  237 (240)
                      +||++.  +...|.       .   ...|.+.  +.+.++|+|+++++++++|+.|||++++..
T Consensus       229 ~tE~~~~~~~~~~~-------~---~~~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~~  282 (422)
T TIGR02155       229 LSEVIGPGVAMECV-------E---TQDGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTLT  282 (422)
T ss_pred             chhhcCCceeeccc-------c---cCCCceEecCeeEEEEECCCCCCCCCCCCeeEEEEecCC
Confidence            999852  222220       0   0112333  357788999889999999999999999743

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.97  E-value=3e-29  Score=212.77  Aligned_cols=218  Identities=27%  Similarity=0.396  Sum_probs=167.9

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ....++++++++|||||||.||+|.++|.++..........   .+++.++|+++..+|++|.+++...++.++..|.++
T Consensus       171 ~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~  247 (579)
T PRK09192        171 PRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHD---GLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSV  247 (579)
T ss_pred             CCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhh---cccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCee
Confidence            34567899999999999999999999999998877655431   346788999999999999999887778888999888


Q ss_pred             EEccC----CCHHHHHHHHHhccceeeeechHHHHHHHhCCC---CCCCCccchhhhhccCCCCCHHHHHHHHHhCCC--
Q 039504           99 LLMQK----FEIGALLELIQRHRVSVAAVVPPLVLALAKNPM---VADYDLSSIRVVLSGAAPLGKELEDALRSRVPQ--  169 (240)
Q Consensus        99 v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~---~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~--  169 (240)
                      ++...    .++..+++.+.+++++++...|..+..+.....   ....+++++|.+++||+++++++.+.+.+.++.  
T Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g  327 (579)
T PRK09192        248 DYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAG  327 (579)
T ss_pred             EeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHHHHHHHHhcC
Confidence            77642    378899999999999977765554544443221   123467789999999999999999999987731  


Q ss_pred             ---CcccccccccccccchhhccCCCCC---------------------CC--CCCCCccccccCCceEEEeeCCCCCCC
Q 039504          170 ---AILGQGYGMTEAGPVLSMCLGFAKQ---------------------PF--PTKSGSCGTVVRNAELKVIDPETGASL  223 (240)
Q Consensus       170 ---~~i~~~yG~tE~~~~~~~~~~~~~~---------------------~~--~~~~~~~G~~~~~~~v~i~d~~~~~~~  223 (240)
                         ..+++.||+||++..+.........                     ..  .....++|++.|+++++|+| ++++++
T Consensus       328 ~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~  406 (579)
T PRK09192        328 FDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPL  406 (579)
T ss_pred             CChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCC
Confidence               3589999999997655433110000                     00  01124789999999999999 568999


Q ss_pred             CCCCCceEEEeCCCCCC
Q 039504          224 PHNQPGEICIRGPQIMK  240 (240)
Q Consensus       224 ~~g~~Gel~v~~~~~~~  240 (240)
                      +.|+.|||+|+|+.+++
T Consensus       407 ~~g~~Gel~i~g~~~~~  423 (579)
T PRK09192        407 PERVVGHICVRGPSLMS  423 (579)
T ss_pred             CCCCEEEEEecCCchhh
Confidence            99999999999998763

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.97  E-value=1.1e-28  Score=210.12  Aligned_cols=207  Identities=23%  Similarity=0.282  Sum_probs=163.4

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ....++++++++|||||||.||+|.++|.++.........    .+.++++|+++..+|++|.+++...++.++..|+++
T Consensus       194 ~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~  269 (600)
T PRK08279        194 SGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGG----LLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATL  269 (600)
T ss_pred             cCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHH----hcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEE
Confidence            3456789999999999999999999999999988877665    456789999999999999999987778889999999


Q ss_pred             EEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccc
Q 039504           99 LLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM  178 (240)
Q Consensus        99 v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  178 (240)
                      ++.+.+++..+++.++++++|++.++|++++.+............++|.  ++|+++++++.+++.+.|+..++++.||+
T Consensus       270 v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~--~~g~~l~~~~~~~~~~~~~~~~l~~~YG~  347 (600)
T PRK08279        270 ALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRL--MIGNGLRPDIWDEFQQRFGIPRILEFYAA  347 (600)
T ss_pred             EEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeE--EecCCCCHHHHHHHHHHhCcceeeeeecc
Confidence            9999999999999999999999999999999998865544444455664  45778999999999999966679999999


Q ss_pred             cccccchhhccCCCCCCCCCCCCccccccC----CceEEEeeCCCC----------CCCCCCCCceEE--EeCCCCC
Q 039504          179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVR----NAELKVIDPETG----------ASLPHNQPGEIC--IRGPQIM  239 (240)
Q Consensus       179 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~----~~~v~i~d~~~~----------~~~~~g~~Gel~--v~~~~~~  239 (240)
                      ||++..+...        ....+++|++.+    ...+...|++.+          .+++.|+.|||+  |.++.++
T Consensus       348 tE~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~  416 (600)
T PRK08279        348 SEGNVGFINV--------FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPF  416 (600)
T ss_pred             cccceeeccc--------CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCcccc
Confidence            9987533211        123456676666    333332232222          357889999998  6677665

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=99.97  E-value=2.6e-29  Score=206.85  Aligned_cols=196  Identities=23%  Similarity=0.309  Sum_probs=152.0

Q ss_pred             CCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEE
Q 039504           21 IEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLL  100 (240)
Q Consensus        21 ~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~  100 (240)
                      ..++++++++|||||||.||+|.++|+++..........    +++.+ ++.++.+|++|.+|+. .++.++..|+++++
T Consensus       117 ~~~~~~~~i~~TSGTTG~PKgV~~t~~~l~~~~~~~~~~----~~~~~-~~~~~~~Pl~h~~g~~-~~~~~l~~G~t~v~  190 (452)
T PRK07445        117 PNLETGWIMIPTGGSSGQIRFAIHTWETLTASVQGFQRY----FQLQQ-VNSFCVLPLYHVSGLM-QFMRSFLTGGKLVI  190 (452)
T ss_pred             CCCCCcEEEEeCCCCCCCCcEEEechHHHHHHHHHHHHH----hcCCC-CceEeccCchhhhhHH-HHHHHHHcCCeEEE
Confidence            456889999999999999999999999988777655542    23444 4577889999999986 67788999999988


Q ss_pred             ccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccccc
Q 039504          101 MQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE  180 (240)
Q Consensus       101 ~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE  180 (240)
                      .+..+.........+++++++..+|++++.+.+..   ...++++|.+++||+++++++.+++++ + ++++++.||+||
T Consensus       191 ~~~~~~~~~~~~~~~~~~t~~~~vP~~l~~l~~~~---~~~l~~l~~i~~gG~~l~~~~~~~~~~-~-~~~l~~~YG~TE  265 (452)
T PRK07445        191 LPYKRLKSGQELPPNPSDFFLSLVPTQLQRLLQLR---PQWLAQFRTILLGGAPAWPSLLEQARQ-L-QLRLAPTYGMTE  265 (452)
T ss_pred             cChHhccchhhhhhhcCceEEEehHHHHHHHHhhC---hhhhhcceEEEECCccCCHHHHHHHHh-c-CCeEecCcchhh
Confidence            76433332334445788999999999999988632   234678999999999999999998876 4 789999999999


Q ss_pred             cccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      ++..+....   .........++|+|.|+++++|+         .|+.|||+|+||.++
T Consensus       266 ~~~~~~~~~---~~~~~~~~~~~G~~~p~~~v~i~---------~g~~Gel~v~g~~~~  312 (452)
T PRK07445        266 TASQIATLK---PDDFLAGNNSSGQVLPHAQITIP---------ANQTGNITIQAQSLA  312 (452)
T ss_pred             hcccccccC---chhhccCCCcCCccCCCCeEEEc---------CCCcceEEEeCCccc
Confidence            875543321   11112235678999999999997         367899999999876

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.96  E-value=2.9e-29  Score=205.63  Aligned_cols=205  Identities=20%  Similarity=0.182  Sum_probs=156.8

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      ...++.++++.+++||||||.||++.++|.++........+.+. ..+++++|+++...+..+..+.....++++..|++
T Consensus        80 ~~~~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~-~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~  158 (445)
T TIGR03335        80 FKSADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFV-SQGFTAGDRMVICASYGMNVGANTMTLAAREVGMS  158 (445)
T ss_pred             cccCCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHH-HcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCE
Confidence            33455678889999999999999999999998766544332211 34788999999988877766655456777888988


Q ss_pred             EEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCC--CccchhhhhccCCCCCHHHHHHHHHhCCCCccccc
Q 039504           98 VLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADY--DLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG  175 (240)
Q Consensus        98 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~--~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  175 (240)
                      ++....  ....++++++++++.+.++|+.+..|++.....+.  ...++|.++++||++++++++++.+.| ++++++.
T Consensus       159 vi~~~~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~-g~~v~~~  235 (445)
T TIGR03335       159 IIPEGK--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELW-GCEVYNT  235 (445)
T ss_pred             EEcCCc--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEec
Confidence            765443  34678999999999999999998888765443332  235899999999999999999999999 7999999


Q ss_pred             ccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCC
Q 039504          176 YGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP  236 (240)
Q Consensus       176 yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~  236 (240)
                      ||+||++ ++..|.         .......+.+++.++|+|+++++++|+|+.|||+|+.-
T Consensus       236 YG~TE~~-~~~~c~---------~~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L  286 (445)
T TIGR03335       236 YGSTEGT-MCGECQ---------AVAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTL  286 (445)
T ss_pred             CChhhhh-heEEec---------CCCCccccCCceEEEEEcCCCCCCCcCCCceEEEEEec
Confidence            9999986 323331         01112233356889999999899999999999999864

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>PLN02479 acetate-CoA ligase

Probab=99.96  E-value=2.4e-28  Score=206.76  Aligned_cols=211  Identities=22%  Similarity=0.311  Sum_probs=160.2

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .+++.++++|||||||.||+|.++|+++.........    .+++.++++++..+|++|.+++...+...+..|.++ ..
T Consensus       193 ~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~-~~  267 (567)
T PLN02479        193 DEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNAL----IWGMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNI-CL  267 (567)
T ss_pred             CcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHh----hcCCCCCCEEEEecchhhhhhHHHHHHHHhhcCceE-ec
Confidence            3456788999999999999999999998665443332    335678899999999999988764444556666555 44


Q ss_pred             cCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCC-CCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccccc
Q 039504          102 QKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVAD-YDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE  180 (240)
Q Consensus       102 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~-~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE  180 (240)
                      ..+++..+++.++++++|++..+|++++.|.+...... ..++++|.++.+|+++++++.+++.+.  +.++++.||+||
T Consensus       268 ~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~yG~tE  345 (567)
T PLN02479        268 RQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFAMSEK--GFRVTHTYGLSE  345 (567)
T ss_pred             cCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHHHHhc--CCceeccccccc
Confidence            67899999999999999999999999999987654332 256788999999999999999999875  788999999999


Q ss_pred             cccchhhccCCC---C---CCCCCCCCccccccCCce-EEEeeCCCCCCCCCC--CCceEEEeCCCCC
Q 039504          181 AGPVLSMCLGFA---K---QPFPTKSGSCGTVVRNAE-LKVIDPETGASLPHN--QPGEICIRGPQIM  239 (240)
Q Consensus       181 ~~~~~~~~~~~~---~---~~~~~~~~~~G~~~~~~~-v~i~d~~~~~~~~~g--~~Gel~v~~~~~~  239 (240)
                      ++..+..+....   .   ..........|.+.++.. ++|+|++++++++.+  ++|||+|+|+.++
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~  413 (567)
T PLN02479        346 TYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVM  413 (567)
T ss_pred             ccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchh
Confidence            864433221000   0   000011235678888876 899998888888764  6799999998765

>PLN03102 acyl-activating enzyme; Provisional

Probab=99.96  E-value=3.2e-28  Score=206.34  Aligned_cols=211  Identities=27%  Similarity=0.365  Sum_probs=157.7

Q ss_pred             CCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEE
Q 039504           21 IEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLL  100 (240)
Q Consensus        21 ~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~  100 (240)
                      ..++|+++++|||||||.||+|.++|.++.........    ...+...++++..+|++|..++. ..+.++..|+++++
T Consensus       183 ~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~----~~~~~~~~~~l~~~pl~h~~g~~-~~~~~~~~g~~~v~  257 (579)
T PLN03102        183 QDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAII----GWEMGTCPVYLWTLPMFHCNGWT-FTWGTAARGGTSVC  257 (579)
T ss_pred             CCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHh----hcCCCCCCeEEecCChhhhcchh-HHHHHHHhcCcEEe
Confidence            45689999999999999999999999997544333222    22345677888999999998887 45667888889888


Q ss_pred             ccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccccc
Q 039504          101 MQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE  180 (240)
Q Consensus       101 ~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE  180 (240)
                      .+++++..+++.|+++++|++.++|+++..|.+.........++++.+++||+++++.+.+++++ + +.++++.||+||
T Consensus       258 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~-g~~i~~~YG~tE  335 (579)
T PLN03102        258 MRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR-L-GFQVMHAYGLTE  335 (579)
T ss_pred             eccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHHH-c-CCeEEeecCccc
Confidence            88889999999999999999999999999998865443334456788999999999999999876 5 789999999999


Q ss_pred             cccchhhccCCC-----CCC-C---CCCCCccccccCCceEEEeeCCCCCCCCC--CCCceEEEeCCCCCC
Q 039504          181 AGPVLSMCLGFA-----KQP-F---PTKSGSCGTVVRNAELKVIDPETGASLPH--NQPGEICIRGPQIMK  240 (240)
Q Consensus       181 ~~~~~~~~~~~~-----~~~-~---~~~~~~~G~~~~~~~v~i~d~~~~~~~~~--g~~Gel~v~~~~~~~  240 (240)
                      ++..+..+....     ... .   ....+..+.+.  ..++++|++++++++.  ++.|||+|+||.+++
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~  404 (579)
T PLN03102        336 ATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGL--ADVDVKNKETQESVPRDGKTMGEIVIKGSSIMK  404 (579)
T ss_pred             cCccccccccccccccCCcccccccccCCCcccccc--cceEEeccccccccCCCCCCceEEEEECcchhh
Confidence            986543321000     000 0   00112222233  3567777777888875  368999999998763

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.96  E-value=3.6e-28  Score=198.41  Aligned_cols=193  Identities=21%  Similarity=0.271  Sum_probs=161.8

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ...++++++++|||||||.||+|.++|.++......+..    .+....+|+.+..+|++|.+++...++.++..|++++
T Consensus        97 ~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~  172 (414)
T PRK08308         97 NYLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNE----ALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPV  172 (414)
T ss_pred             CCCCCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHHH----hhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEE
Confidence            346789999999999999999999999999887776655    3456788999999999999998767889999999999


Q ss_pred             EccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccc
Q 039504          100 LMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT  179 (240)
Q Consensus       100 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  179 (240)
                      +.+..++..+++.+++++++++.++|+++..+.+.....    .+++.++.+|+++++++.+++++.  ..++++.||+|
T Consensus       173 ~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~----~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~t  246 (414)
T PRK08308        173 IITNKNPKFALNILRNTPQHILYAVPLMLHILGRLLPGT----FQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCS  246 (414)
T ss_pred             ecCCCCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCcc----ccccEEEEccCCCCHHHHHHHHHh--CChhhhccCcc
Confidence            998899999999999999999999999999998765321    367889999999999999999987  46899999999


Q ss_pred             ccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCC
Q 039504          180 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP  236 (240)
Q Consensus       180 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~  236 (240)
                      |++.+....       .......+|+|+|++++++.+ +      .+++|||++++.
T Consensus       247 E~~~~~~~~-------~~~~~~~~G~p~~~~~~~~~~-~------~~~~gel~v~~~  289 (414)
T PRK08308        247 EAGCVSICP-------DMKSHLDLGNPLPHVSVSAGS-D------ENAPEEIVVKMG  289 (414)
T ss_pred             ccCCeeecC-------CCCCCCccCccCCCeEEEEec-C------CCCCceEEEEcC
Confidence            998543211       122456799999999999876 2      367799998754

>PRK13391 acyl-CoA synthetase; Provisional

Probab=99.96  E-value=4.4e-28  Score=202.95  Aligned_cols=202  Identities=27%  Similarity=0.411  Sum_probs=162.9

Q ss_pred             CCCcEEEecCCCCCCCCceeeee--hHHHHHHH---HhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           23 PDDPVALPFSSGTTGLPKGVVLT--HKSLITSV---AQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        23 ~~~~~~i~~TSGtTG~pk~v~~s--~~~l~~~~---~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      ..+.+.++|||||||.||+|.++  |.++....   .....    .+.+.++++++...|++|..++. ..+.++..|++
T Consensus       153 ~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~p~~h~~~~~-~~~~~~~~g~~  227 (511)
T PRK13391        153 ESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQR----LWGFRSDMVYLSPAPLYHSAPQR-AVMLVIRLGGT  227 (511)
T ss_pred             cccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHH----hcCCCCCCeEEEcCCHHHHHHHH-HHHHHHHcCce
Confidence            34578999999999999999954  55543222   11122    34567889999999999998886 56778899999


Q ss_pred             EEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCC--CCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccc
Q 039504           98 VLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV--ADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG  175 (240)
Q Consensus        98 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  175 (240)
                      +++.+.+++..+++.++++++|++..+|+++..+.+....  ....++++|.+++||+++++++.+++++.+ +..+++.
T Consensus       228 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~-g~~v~~~  306 (511)
T PRK13391        228 VIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWW-GPIIHEY  306 (511)
T ss_pred             EEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHc-CCceeee
Confidence            9999889999999999999999999999999988765432  223467899999999999999999999988 6889999


Q ss_pred             ccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCC
Q 039504          176 YGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP  236 (240)
Q Consensus       176 yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~  236 (240)
                      ||+||++.+.....    ......++++|+|.++ .++|+| +++++++.|+.|||+++|+
T Consensus       307 YG~tE~~~~~~~~~----~~~~~~~~~vG~~~~g-~~~i~d-~~~~~~~~g~~Gel~~~g~  361 (511)
T PRK13391        307 YAATEGLGFTACDS----EEWLAHPGTVGRAMFG-DLHILD-DDGAELPPGEPGTIWFEGG  361 (511)
T ss_pred             eccccccceEEecC----ccccccCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecC
Confidence            99999986544321    1122345789999999 689999 6799999999999999998

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=99.96  E-value=1.5e-28  Score=201.85  Aligned_cols=227  Identities=26%  Similarity=0.379  Sum_probs=192.0

Q ss_pred             chhhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhh
Q 039504            4 HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS   83 (240)
Q Consensus         4 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g   83 (240)
                      .+++..+...+..++..++.+|+.+|+|||||||.||++.+++...........+   ..++..++|++++.....|+.+
T Consensus       219 ~~~~~~~~a~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~---~~~d~q~~dv~~~~~d~GWi~g  295 (626)
T KOG1175|consen  219 FWSLELKKASPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSR---YHFDLQPSDVLWCASDLGWITG  295 (626)
T ss_pred             cHHHHhhhcCCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcc---eeccCCCcceEEEecccCeeec
Confidence            4566666667777788999999999999999999999999999876554433332   2567899999999999999999


Q ss_pred             hHHHHHHHhhcCceEEEcc--CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCC--CCccchhhhhccCCCCCHHH
Q 039504           84 LNSVLLCSLRAGAGVLLMQ--KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVAD--YDLSSIRVVLSGAAPLGKEL  159 (240)
Q Consensus        84 ~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~--~~~~~lr~v~~~G~~~~~~~  159 (240)
                      .+..++.++..|+++++..  ++++..+++.+.++++|++.+.|+.++.+.+......  .++++||.+.+.||++.++.
T Consensus       296 ~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~  375 (626)
T KOG1175|consen  296 HSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEA  375 (626)
T ss_pred             cchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcch
Confidence            9988899999999999975  4699999999999999999999999998877655433  44467999999999999999


Q ss_pred             HHHHHHhCCCCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCC-CCceEEEeCCC
Q 039504          160 EDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHN-QPGEICIRGPQ  237 (240)
Q Consensus       160 ~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g-~~Gel~v~~~~  237 (240)
                      .+++.+.+....|++.||+||++..++.+.....   +..+++.+.|.+++++.|+| ++|++++.+ +.|+|+++.|.
T Consensus       376 ~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~---p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~~~G~l~~~~~~  450 (626)
T KOG1175|consen  376 WEWWKRVTGLDPIYETYGQTETGGICITPKPGKL---PIKPGSAGKPFPGYDVQILD-ENGNELPPSTGNGELRLKPPW  450 (626)
T ss_pred             HHHHHHhcCccchhhceeeeccCceeeeccCCCC---CcCccccCCCCCCcceEEEC-CCCCCcCCCCceeEEEEeCCC
Confidence            9999999943369999999999998887633221   57789999999999999999 579999877 89999999764

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.96  E-value=8.2e-28  Score=197.51  Aligned_cols=197  Identities=28%  Similarity=0.408  Sum_probs=162.0

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ....+++++++|||||||.||++.++|.++.........    .++++++|+++..+|++|.+++. .++.++..|++++
T Consensus       107 ~~~~~~~~~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~-~~~~~l~~g~~~~  181 (436)
T TIGR01923       107 SFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKE----NLGFTEDDNWLLSLPLYHISGLS-ILFRWLIEGATLR  181 (436)
T ss_pred             cCCcCceEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHh----hcCCCCCceEEEccCcHhHHHHH-HHHHHHhcCceEE
Confidence            455688999999999999999999999999887776665    45688999999999999998886 6789999999999


Q ss_pred             EccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccc
Q 039504          100 LMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT  179 (240)
Q Consensus       100 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  179 (240)
                      +.+.++  .+++.+++++++++.++|+++..+.+.....    +++|.++++|+++++++.+.+++.  +..+++.||+|
T Consensus       182 ~~~~~~--~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~----~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~t  253 (436)
T TIGR01923       182 IVDKFN--QLLEMIANERVTHISLVPTQLNRLLDEGGHN----ENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMT  253 (436)
T ss_pred             ecchHH--HHHHHHHHhCCeEEEeHHHHHHHHHhCcCCC----CceEEEEECCCCCCHHHHHHHHHh--CCceeeEecCC
Confidence            987654  8999999999999999999999998875432    679999999999999999988764  88999999999


Q ss_pred             ccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          180 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       180 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      |++..+.....   .... ...++|+|+++++++|.+.+.      ++.|||+|+|+.++
T Consensus       254 E~~~~~~~~~~---~~~~-~~~~~G~~~~~~~~~i~~~~~------~~~Gel~v~~~~~~  303 (436)
T TIGR01923       254 ETCSQVTTATP---EMLH-ARPDVGRPLAGREIKIKVDNK------EGHGEIMVKGANLM  303 (436)
T ss_pred             ccchhccCcCc---cccc-cccCCCccCCCcEEEEEeCCC------CCceEEEEECCccc
Confidence            99876554321   1111 122489999999999844121      37899999998765

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.96  E-value=3.7e-28  Score=206.18  Aligned_cols=219  Identities=19%  Similarity=0.307  Sum_probs=160.3

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCc--cccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNL--YLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      ...++|+++++|||||||.||+|.++|.++..........+....  ....++++++.+|++|..|+...++.+++.|++
T Consensus       156 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~  235 (578)
T PRK05850        156 PRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCP  235 (578)
T ss_pred             CCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHHHHHhcCCc
Confidence            356789999999999999999999999999877655433211110  135678999999999999988678999999999


Q ss_pred             EEEccC----CCHHHHHHHHHhccceeeeechHHHHHHH-hCCC---CCCCCccchhhhhccCCCCCHHHHHHHHHhCC-
Q 039504           98 VLLMQK----FEIGALLELIQRHRVSVAAVVPPLVLALA-KNPM---VADYDLSSIRVVLSGAAPLGKELEDALRSRVP-  168 (240)
Q Consensus        98 ~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~-~~~~---~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~-  168 (240)
                      +++.++    .++..+++.++++++++. .+|.++..+. ....   .....++++|.++.||+++++++.+++.+.|+ 
T Consensus       236 ~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~  314 (578)
T PRK05850        236 AVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERVHPATLKRFADRFAP  314 (578)
T ss_pred             EEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCCCCHHHHHHHHHHHHh
Confidence            988764    378999999999999854 6666544333 2211   12335678999999999999999999998773 


Q ss_pred             ----CCcccccccccccccchhhccCCCCC-----------CC---------CCCCCccccccCCceEEEeeCCCCCCCC
Q 039504          169 ----QAILGQGYGMTEAGPVLSMCLGFAKQ-----------PF---------PTKSGSCGTVVRNAELKVIDPETGASLP  224 (240)
Q Consensus       169 ----~~~i~~~yG~tE~~~~~~~~~~~~~~-----------~~---------~~~~~~~G~~~~~~~v~i~d~~~~~~~~  224 (240)
                          +..+++.||+||++..+.........           ..         .......|.|. +.+++|+|++++++++
T Consensus       315 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~  393 (578)
T PRK05850        315 FNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIECP  393 (578)
T ss_pred             cCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcCCC
Confidence                34689999999987543322100000           00         00011334443 5789999988889999


Q ss_pred             CCCCceEEEeCCCCCC
Q 039504          225 HNQPGEICIRGPQIMK  240 (240)
Q Consensus       225 ~g~~Gel~v~~~~~~~  240 (240)
                      .|+.|||+|+|+.+++
T Consensus       394 ~g~~Gel~v~g~~~~~  409 (578)
T PRK05850        394 AGTVGEIWVHGDNVAA  409 (578)
T ss_pred             CCCEEEEEEecCcccc
Confidence            9999999999998874

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.96  E-value=4.5e-27  Score=198.27  Aligned_cols=211  Identities=23%  Similarity=0.293  Sum_probs=157.0

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      +..+.++++|||||||.||++.++|.++.........    .+.+..+++++..+|++|..++...++..+ .|+..+..
T Consensus       180 ~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~----~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~-~~g~~~~~  254 (545)
T PRK08162        180 DEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNIL----AWGMPKHPVYLWTLPMFHCNGWCFPWTVAA-RAGTNVCL  254 (545)
T ss_pred             CCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHH----hcCCCCCCeeEeccCcHhhhhHHHHHHHHH-HccEEEEe
Confidence            3457899999999999999999999987665544333    234677889999999999988864444444 45555555


Q ss_pred             cCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccccc
Q 039504          102 QKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA  181 (240)
Q Consensus       102 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~  181 (240)
                      ..+++..+++.++++++|++.++|++++.|.+........+...+.++++|+++++++.+.+++.  ++++++.||+||+
T Consensus       255 ~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~  332 (545)
T PRK08162        255 RKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEI--GFDLTHVYGLTET  332 (545)
T ss_pred             CCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHh--CCceeeccccccc
Confidence            67899999999999999999999999999998655444444556667889999999999998774  7899999999998


Q ss_pred             ccchhhccCCCC-C-----CCCCCCCccccccCC-ceEEEeeCCCCCCCCCC--CCceEEEeCCCCC
Q 039504          182 GPVLSMCLGFAK-Q-----PFPTKSGSCGTVVRN-AELKVIDPETGASLPHN--QPGEICIRGPQIM  239 (240)
Q Consensus       182 ~~~~~~~~~~~~-~-----~~~~~~~~~G~~~~~-~~v~i~d~~~~~~~~~g--~~Gel~v~~~~~~  239 (240)
                      +..+..+..... .     .......+.|.+.+. ..++|+|++++++++.+  +.|||+|+|+.++
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~  399 (545)
T PRK08162        333 YGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVM  399 (545)
T ss_pred             CcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcch
Confidence            654443321100 0     001122455666553 35789998888999763  4699999998875

>PRK07868 acyl-CoA synthetase; Validated

Probab=99.95  E-value=3.8e-27  Score=209.45  Aligned_cols=203  Identities=18%  Similarity=0.221  Sum_probs=158.3

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .++|+++|+|| ||||.||++.++|.+..........    .+.+.++|++++.+|++|.+++...++.++..|.++++.
T Consensus       604 ~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~----~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~  678 (994)
T PRK07868        604 LARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTAS----AAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALS  678 (994)
T ss_pred             CCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhh----hcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEec
Confidence            36889999998 5777777777787665443332222    346788999999999999999986667778888888888


Q ss_pred             cCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccccc
Q 039504          102 QKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA  181 (240)
Q Consensus       102 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~  181 (240)
                      +.++++.+++.|+++++|++.++|++++.|.+........++++|.++  |+.+++++.+++.+.|+++++++.||+||+
T Consensus       679 ~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~  756 (994)
T PRK07868        679 RGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDG  756 (994)
T ss_pred             CCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeecccc
Confidence            889999999999999999999999999999886544444567888765  345999999999999977899999999998


Q ss_pred             ccchhhccCCCCCCCCCCCCccccccCCc-eEEEe--eC--------CCC--CCCCCCCCceEEEeCCCC
Q 039504          182 GPVLSMCLGFAKQPFPTKSGSCGTVVRNA-ELKVI--DP--------ETG--ASLPHNQPGEICIRGPQI  238 (240)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~v~i~--d~--------~~~--~~~~~g~~Gel~v~~~~~  238 (240)
                      +......       .....+++|+|+|++ +++|.  |+        ++|  ++++.|+.|||+++++..
T Consensus       757 ~~~~~~~-------~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~  819 (994)
T PRK07868        757 QAVLANV-------SGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP  819 (994)
T ss_pred             ccccccc-------CCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC
Confidence            7543211       123457899999997 56653  21        344  567899999999999854

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.95  E-value=2.8e-26  Score=192.87  Aligned_cols=222  Identities=23%  Similarity=0.296  Sum_probs=162.7

Q ss_pred             chhhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCC-----CCc------cccCCcEE
Q 039504            4 HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGEN-----PNL------YLTNGDVV   72 (240)
Q Consensus         4 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~-----~~~------~~~~~d~~   72 (240)
                      +++++.+...+....... ..|.++++|||||||.||+|.++|.++............     ...      ....++++
T Consensus       144 ~~~~~~~~~~~~~~~~~~-~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (533)
T PRK07798        144 DYEDALAAGSPERDFGER-SPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRR  222 (533)
T ss_pred             cHHHHHhccCCcCCCCCC-CCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceE
Confidence            455555443322222222 345578999999999999999999998765433211100     011      11567899


Q ss_pred             EEecchHHhhhhHHHHHHHhhcCceEEEcc--CCCHHHHHHHHHhccceeeeechHHHH-HHHhCCC-CCCCCccchhhh
Q 039504           73 LCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ--KFEIGALLELIQRHRVSVAAVVPPLVL-ALAKNPM-VADYDLSSIRVV  148 (240)
Q Consensus        73 l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~-~l~~~~~-~~~~~~~~lr~v  148 (240)
                      +..+|++|..+++ ..+.++..|+++++.+  .+++..+++.+++++++++.++|+.+. .+..... .....++++|.+
T Consensus       223 ~~~~pl~~~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i  301 (533)
T PRK07798        223 FPAPPLMHGAGQW-AAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAI  301 (533)
T ss_pred             EEecchhhhhhHH-HHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEE
Confidence            9999999999997 6789999999999998  789999999999999999999986553 3333322 233456789999


Q ss_pred             hccCCCCCHHHHHHHHHhCCCCcccccccccccccchhhccCCCCCCCCCCCCccc--cccCCceEEEeeCCCCCCCCCC
Q 039504          149 LSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCG--TVVRNAELKVIDPETGASLPHN  226 (240)
Q Consensus       149 ~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G--~~~~~~~v~i~d~~~~~~~~~g  226 (240)
                      ++||+++++++.+++++.+++..+++.||+||++.......    .   ......|  ++.++..++|+| +++++++.|
T Consensus       302 ~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~----~---~~~~~~g~~~~~~~~~~~i~~-~~~~~~~~g  373 (533)
T PRK07798        302 ASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTV----A---KGAVHTGGPRFTIGPRTVVLD-EDGNPVEPG  373 (533)
T ss_pred             EECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCC----C---CCCccCCCCccCCCceEEEEC-CCCCCCCCC
Confidence            99999999999999999998889999999999965443321    0   1112233  788899999999 557799999


Q ss_pred             CC--ceEEEeC
Q 039504          227 QP--GEICIRG  235 (240)
Q Consensus       227 ~~--Gel~v~~  235 (240)
                      +.  |+|++.+
T Consensus       374 ~~~~g~l~~~~  384 (533)
T PRK07798        374 SGEIGWIARRG  384 (533)
T ss_pred             CCCeeEEEeec
Confidence            88  7777544

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.95  E-value=4.6e-26  Score=188.34  Aligned_cols=186  Identities=28%  Similarity=0.420  Sum_probs=152.7

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ....++++++++|||||||.||+|.++|+++.........    .+++.++|+++..+|++|.+++. .++.++..|+++
T Consensus       130 ~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~----~~~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~G~~v  204 (458)
T PRK09029        130 VAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLS----LMPFTAQDSWLLSLPLFHVSGQG-IVWRWLYAGATL  204 (458)
T ss_pred             ccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhh----cCCCCccceEEEecCcHhhhhhH-HHHHHHhCCceE
Confidence            3456788999999999999999999999999988776655    45678899999999999999986 667789999999


Q ss_pred             EEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccc
Q 039504           99 LLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM  178 (240)
Q Consensus        99 v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  178 (240)
                      ++.+.   ..+++.+.  +++.+..+|+++..+......    ..++|.+++||+++++.+.+.+.+.  +.++++.||+
T Consensus       205 ~~~~~---~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~YG~  273 (458)
T PRK09029        205 VVRDK---QPLEQALA--GCTHASLVPTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGYGL  273 (458)
T ss_pred             EeCCh---HHHHHHHh--hceeeecChHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHHc--CCcEeccccc
Confidence            98764   45666663  789999999999998876543    3479999999999999999998864  7899999999


Q ss_pred             cccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       179 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      ||++......     .  .....++|+|++++.++|+|            |||+|+|+.++
T Consensus       274 tE~~~~~~~~-----~--~~~~~~~G~~~~~~~~~i~~------------gel~v~g~~~~  315 (458)
T PRK09029        274 TEMASTVCAK-----R--ADGLAGVGSPLPGREVKLVD------------GEIWLRGASLA  315 (458)
T ss_pred             cccCcceecc-----C--CCCCCCCCCCCCCCEEEEeC------------CEEEEecCcee
Confidence            9998644321     1  11234689999999999987            89999998765

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.94  E-value=1.3e-25  Score=180.02  Aligned_cols=183  Identities=28%  Similarity=0.355  Sum_probs=147.5

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ...++|+++++|||||||.||+|.++|.++..........      +...++++..+|++|..++. .++.++..|++.+
T Consensus        31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~------~~~~~~~~~~~p~~~~~g~~-~~~~~l~~g~~~v  103 (358)
T PRK07824         31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR------LGGPGQWLLALPAHHIAGLQ-VLVRSVIAGSEPV  103 (358)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc------cCCCCeEEEECChHHHHHHH-HHHHHHHcCCeEE
Confidence            3456899999999999999999999999998877655442      23456788899999999987 5677888888877


Q ss_pred             E---ccCCCHHHHHHHHHhcc--ceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccc
Q 039504          100 L---MQKFEIGALLELIQRHR--VSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ  174 (240)
Q Consensus       100 ~---~~~~~~~~~~~~i~~~~--~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  174 (240)
                      .   ...+++..+++.+++++  .++...+|..+..+...... ...++++|.+++||+++++++.+++.+ + +.++++
T Consensus       104 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-~~~~~~l~~i~~gG~~l~~~~~~~~~~-~-~~~v~~  180 (358)
T PRK07824        104 ELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-TAALAELDAVLVGGGPAPAPVLDAAAA-A-GINVVR  180 (358)
T ss_pred             ecCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-cCCcccceEEEECCCCCCHHHHHHHHh-c-CCcEEe
Confidence            6   34589999999999998  45666788888777665432 245778999999999999999999886 4 789999


Q ss_pred             cccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          175 GYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       175 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      .||+||++..+.               ..|+|.++++++|.|            |||+++|+.++
T Consensus       181 ~YG~TE~~~~~~---------------~~G~~~~g~~v~i~~------------Gei~v~g~~~~  218 (358)
T PRK07824        181 TYGMSETSGGCV---------------YDGVPLDGVRVRVED------------GRIALGGPTLA  218 (358)
T ss_pred             cccCCccCCCcC---------------cCceeCCCCEEEecC------------CEEEEecCccc
Confidence            999999874321               248899999999854            89999998875

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.94  E-value=2.9e-26  Score=180.81  Aligned_cols=207  Identities=24%  Similarity=0.255  Sum_probs=166.3

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      ...+.-++...|..||||||.|+.+.+++..+......+.+.+. ..+...+|++..+....--.|.....+++-..|++
T Consensus        84 ~~~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~-~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~  162 (438)
T COG1541          84 DFAVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLY-SAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGAT  162 (438)
T ss_pred             cccccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHH-HccCCCCCEEEEEeeeccccCCchhHHHHHhhCEE
Confidence            34555677777999999999999999999998877766655443 45788999888766532222222356777778998


Q ss_pred             EEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCC--CCccchhhhhccCCCCCHHHHHHHHHhCCCCccccc
Q 039504           98 VLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVAD--YDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG  175 (240)
Q Consensus        98 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~--~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  175 (240)
                      ++...+.+.+..++++++++++++.++|+.+..|++.+++.+  ..-.++|.+++|+|++++++++.+.+.| ++.+++.
T Consensus       163 vip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~-g~~~~di  241 (438)
T COG1541         163 VIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRF-GCKAFDI  241 (438)
T ss_pred             EEccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHh-CCceeec
Confidence            888888889999999999999999999999999999888875  3334799999999999999999999999 8999999


Q ss_pred             ccccccccch-hhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeC
Q 039504          176 YGMTEAGPVL-SMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRG  235 (240)
Q Consensus       176 yG~tE~~~~~-~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~  235 (240)
                      ||+||..+.. ..|..         ........+...++|+||++++.+++|+.|||+++.
T Consensus       242 YGltE~~g~g~~eC~~---------~~glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~  293 (438)
T COG1541         242 YGLTEGFGPGAGECTE---------RNGLHIWEDHFIFEIVDPETGEQLPDGERGELVITT  293 (438)
T ss_pred             cccccccCCccccccc---------ccCCCcchhhceeeeecCCcCccCCCCCeeEEEEEe
Confidence            9999997663 33411         112233446788999999999999999999999984

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.93  E-value=7.8e-25  Score=175.76  Aligned_cols=169  Identities=19%  Similarity=0.139  Sum_probs=132.4

Q ss_pred             CCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCcccc--CCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           24 DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLT--NGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        24 ~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~--~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      +..++++|||||||.||+|.++|.++..........    ++++  +.|++++++|++|++|+...++.++..|++++..
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~  170 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKI----LGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQL  170 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHH----hCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEec
Confidence            346789999999999999999999998877665552    2343  3468999999999999876678888899999998


Q ss_pred             cCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccccc
Q 039504          102 QKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA  181 (240)
Q Consensus       102 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~  181 (240)
                      ..+++..+++.++.+  +++.++|++++.+.+..    ..++++|. +++|+++++++++.+++. +..++++.||+||+
T Consensus       171 ~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt  242 (386)
T TIGR02372       171 AAAPASGIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATET  242 (386)
T ss_pred             CCCChHHHHHhhccC--CEEEECcHHHHHHHhhC----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccc
Confidence            888988888888754  78999999999997753    24566775 678999999999999885 23579999999999


Q ss_pred             ccchhhccCCCCCCCCCCCCccccccCCceEEE
Q 039504          182 GPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKV  214 (240)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i  214 (240)
                      +++....          .+...|++.|++++.+
T Consensus       243 ~~i~~~~----------~~~~~~~~~p~~~~~~  265 (386)
T TIGR02372       243 GGIGLRE----------APDDPFRLLPDLACFA  265 (386)
T ss_pred             ccccccc----------CCCCCcccCCCccccC
Confidence            8654331          1223467778777654

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=99.93  E-value=1e-24  Score=173.66  Aligned_cols=201  Identities=27%  Similarity=0.372  Sum_probs=164.8

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ...+-.+++..+|||||||.||..+++|.-..........    .++++++|+++..+|++|+.|....+-.++..|+++
T Consensus       237 ~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~----~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~  312 (649)
T KOG1179|consen  237 SGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYY----VFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATV  312 (649)
T ss_pred             CCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHH----HhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceE
Confidence            4456678999999999999999999999988776664544    568999999999999999999988899999999999


Q ss_pred             EEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccc
Q 039504           99 LLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM  178 (240)
Q Consensus        99 v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  178 (240)
                      ++-..|+...+|+-..+|++|++.-.-.+.++|..++..+.++-.++|+.+  |..+-++.++.+.++|+..+|.+.||+
T Consensus       313 VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~Yga  390 (649)
T KOG1179|consen  313 VLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGA  390 (649)
T ss_pred             EEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEecc
Confidence            999999999999999999999999999999999999988877777888765  445999999999999966779999999


Q ss_pred             cccccchhhccCCCCCCCCCCCCcccc------ccCCceEEEeeCCCCCC----------CCCCCCceEEE
Q 039504          179 TEAGPVLSMCLGFAKQPFPTKSGSCGT------VVRNAELKVIDPETGAS----------LPHNQPGEICI  233 (240)
Q Consensus       179 tE~~~~~~~~~~~~~~~~~~~~~~~G~------~~~~~~v~i~d~~~~~~----------~~~g~~Gel~v  233 (240)
                      ||........        +..-+.+|.      -+--+++.-+|++++++          |++||+|.++=
T Consensus       391 TEgn~~~~N~--------d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~  453 (649)
T KOG1179|consen  391 TEGNSNLVNY--------DGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVG  453 (649)
T ss_pred             ccCcceeeee--------cCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEE
Confidence            9997544332        112222222      22234555567788875          57899997653

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.91  E-value=8.8e-23  Score=175.40  Aligned_cols=211  Identities=27%  Similarity=0.322  Sum_probs=170.8

Q ss_pred             CCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEE
Q 039504           21 IEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLL  100 (240)
Q Consensus        21 ~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~  100 (240)
                      ..+++.+|++|||||||.||||..+|.++.+...+...    .+.+..+|+++...++.+....+ .++.++..|+++++
T Consensus       363 ~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~----~~~~~~~d~~l~~~s~~fD~~~~-~~f~~l~~G~~l~~  437 (642)
T COG1020         363 LLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGA----RFGLDADDRVLALASLSFDASVF-EIFGALLEGARLVL  437 (642)
T ss_pred             CCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHH----hcCCCcccEEeecCCcccchhHH-HHHHHHhCCCEEEe
Confidence            45589999999999999999999999999886666655    35678899999988887766666 68899999999999


Q ss_pred             ccC---CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCC--CCccchhhhhccCCCCCHHHHHHHHHhCC-CCcccc
Q 039504          101 MQK---FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVAD--YDLSSIRVVLSGAAPLGKELEDALRSRVP-QAILGQ  174 (240)
Q Consensus       101 ~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~--~~~~~lr~v~~~G~~~~~~~~~~~~~~~~-~~~i~~  174 (240)
                      ...   .++..+.+.+.+++++++..+|..+..+........  .....+|.+++||+.++..+..++....+ ...+++
T Consensus       438 ~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~  517 (642)
T COG1020         438 APALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLN  517 (642)
T ss_pred             cCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEee
Confidence            864   789999999999999999999999999988732222  22234899999999999999999988754 467999


Q ss_pred             cccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          175 GYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       175 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      .||.||+........... .. .. ...+|+|.++..+.|+| +..+++|.|..||+++.|.++++
T Consensus       518 ~ygpTe~~~~~~~~~~~~-~~-~~-~~piG~p~~n~~~~ild-~~~~~~p~gv~gel~i~g~~~a~  579 (642)
T COG1020         518 LYGPTEATLDAPSFPISA-EL-ES-RVPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAGLGLAL  579 (642)
T ss_pred             ccCccHHhhheeeEEccc-cc-CC-CCCcceeeCCCeEEEEC-CCCCcCCCCCCeeeEECCcchhh
Confidence            999999654333321111 11 11 56899999999999999 88999999999999999988764

>PTZ00297 pantothenate kinase; Provisional

Probab=99.88  E-value=1.2e-21  Score=176.37  Aligned_cols=209  Identities=10%  Similarity=0.039  Sum_probs=142.0

Q ss_pred             cchhhHhhcCCC--CCCCCCCCCCCcEEEec---CCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecc
Q 039504            3 LHFTVLSEADED--QIPEVAIEPDDPVALPF---SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLP   77 (240)
Q Consensus         3 ~~~~~l~~~~~~--~~~~~~~~~~~~~~i~~---TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p   77 (240)
                      ++|+++++....  .......+++|++.++|   ||||||.||||.+||+++...+........ .....++|++++++|
T Consensus       575 ~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~-~~~~~~~D~~Ls~LP  653 (1452)
T PTZ00297        575 IPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGV-LPSSFKKHLMVHFTP  653 (1452)
T ss_pred             eeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhcc-ccCCCCCCEEEEech
Confidence            468888876532  11223457889998885   999999999999999999998876543110 113467899999999


Q ss_pred             hHHhhhhHHHHHHHhhcCceEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCc---------------
Q 039504           78 LFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDL---------------  142 (240)
Q Consensus        78 ~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~---------------  142 (240)
                      ++|+++.. ..+.++..|+++.+   ++++.+++.+++++||++.++|.+++.+.+.........               
T Consensus       654 LaHI~er~-~~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k  729 (1452)
T PTZ00297        654 FAMLFNRV-FVLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLR  729 (1452)
T ss_pred             HHHHHHHH-HHHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            99999965 56778899988864   478999999999999999999999997765322110000               


Q ss_pred             ---------------------------cchhhhhccCC--CCCHHHHHHHHHhCCCCcccccccccccccchhhccCCCC
Q 039504          143 ---------------------------SSIRVVLSGAA--PLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAK  193 (240)
Q Consensus       143 ---------------------------~~lr~v~~~G~--~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~  193 (240)
                                                 .++|.+++||.  +++..+..       ..++...||+||+..  ...     
T Consensus       730 ~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~-------~i~i~~g~glTE~~~--~~~-----  795 (1452)
T PTZ00297        730 SRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE-------HISVCYVPCLREVFF--LPS-----  795 (1452)
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC-------CceEEEecceEEeee--ecC-----
Confidence                                       13555555542  33322211       345666789999531  111     


Q ss_pred             CCCCCCCCccccccCCceEEEeeC-CCCCCCCCCCCceEEEeCC
Q 039504          194 QPFPTKSGSCGTVVRNAELKVIDP-ETGASLPHNQPGEICIRGP  236 (240)
Q Consensus       194 ~~~~~~~~~~G~~~~~~~v~i~d~-~~~~~~~~g~~Gel~v~~~  236 (240)
                       ....  ...|.|+|+++++|.|. |.+.   .+..|||++++.
T Consensus       796 -~~~~--~~~G~PlpgvEvKI~~~~E~~~---~~~~GEIlvr~~  833 (1452)
T PTZ00297        796 -EGVF--CVDGTPAPSLQVDLEPFDEPSD---GAGIGQLVLAKK  833 (1452)
T ss_pred             -CCCc--ccCCeecCceEEEEcccccccC---CCCCCeEEEEEC
Confidence             1111  12399999999999873 3222   124699999864

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.68  E-value=8.6e-16  Score=124.27  Aligned_cols=153  Identities=19%  Similarity=0.149  Sum_probs=107.4

Q ss_pred             cEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce-EEEcc-C
Q 039504           26 PVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG-VLLMQ-K  103 (240)
Q Consensus        26 ~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~-~v~~~-~  103 (240)
                      -..+..||||||.|-.+.++................ ..++..++++....   +..+   .++..+.+... +-..+ .
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~-~~g~~~g~r~a~~~---~~~~---~ly~~~~~~~~~~~~~~l~  173 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVL-PDGLFAKHRIAFFL---RADN---NLYQSVNNRWISLDFFDLL  173 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhC-ccccccCCcEEEEE---ccCh---hHHHHHHhccceeeecCCC
Confidence            456778999999999999999876544333222222 23556666555442   1111   12222222211 12221 2


Q ss_pred             CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccccccc
Q 039504          104 FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGP  183 (240)
Q Consensus       104 ~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~  183 (240)
                      .+.+.+++.|++++|+++.++|+.+..|++..+..+.. ..+|.++++||.+++++++.+++.| ++++++.||+|| +.
T Consensus       174 ~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~f-g~~V~~~YG~tE-g~  250 (430)
T TIGR02304       174 APFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVF-KNTVHQIYQATE-GF  250 (430)
T ss_pred             cCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHh-CCCeeEccCCch-hh
Confidence            56789999999999999999999999999976655443 4789999999999999999999999 899999999999 55


Q ss_pred             chhhc
Q 039504          184 VLSMC  188 (240)
Q Consensus       184 ~~~~~  188 (240)
                      +...|
T Consensus       251 la~eC  255 (430)
T TIGR02304       251 LASTC  255 (430)
T ss_pred             eEEec
Confidence            54444

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=99.51  E-value=9.5e-13  Score=104.43  Aligned_cols=205  Identities=18%  Similarity=0.139  Sum_probs=124.2

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCc-EEEEecchHHh---hhh-HHHHHHHhhc
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGD-VVLCVLPLFHI---YSL-NSVLLCSLRA   94 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d-~~l~~~p~~~~---~g~-~~~~~~~l~~   94 (240)
                      +..++++..++.||||||.|-.+.+++..+......+...+..+.+..... .++...|....   .+. ....+..+..
T Consensus        85 S~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~  164 (365)
T PF04443_consen   85 SVPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFF  164 (365)
T ss_pred             ecChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhccc
Confidence            444567788899999999998788887766655543333222122222222 23333342211   111 1112223344


Q ss_pred             CceEEEc-cCCCHHHHHHHHH----hccceeeeechHHHHHHHhCCCCCCCCc--c-chhhhhccC------CCCC-HHH
Q 039504           95 GAGVLLM-QKFEIGALLELIQ----RHRVSVAAVVPPLVLALAKNPMVADYDL--S-SIRVVLSGA------APLG-KEL  159 (240)
Q Consensus        95 G~~~v~~-~~~~~~~~~~~i~----~~~~t~l~~~p~~~~~l~~~~~~~~~~~--~-~lr~v~~~G------~~~~-~~~  159 (240)
                      +....+- ..+|.+.+.+.+.    +.++..+++.|.++..+....++.+..+  + ..+++..||      +.++ +++
T Consensus       165 ~~~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef  244 (365)
T PF04443_consen  165 GSRFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEF  244 (365)
T ss_pred             CceeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHH
Confidence            5553332 2367777766664    4567888998887776665555444333  2 344555555      4575 688


Q ss_pred             HHHHHHhCCC---CcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCC
Q 039504          160 EDALRSRVPQ---AILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP  236 (240)
Q Consensus       160 ~~~~~~~~~~---~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~  236 (240)
                      .+.+++.|+-   .++++.||+||..+....+.       ...    -...|+  |.|.||++.++++.|++|-|.|-.+
T Consensus       245 ~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~-------~~~----~~~p~w--V~iRDp~tl~~~~~Ge~Gli~vidl  311 (365)
T PF04443_consen  245 YARLQEVFGVIPIENIYDMYGMTELNSQAYECG-------HGH----FHVPPW--VIIRDPETLEPLPPGETGLIQVIDL  311 (365)
T ss_pred             HHHHHHHHCCCCHHHeeeeeeccccchhheeCC-------CCc----ccCCCe--EEEECCCCCcCCCCCCeeEEEEEcc
Confidence            8899998832   47999999999876554431       101    123455  7788999999999999999998766


Q ss_pred             C
Q 039504          237 Q  237 (240)
Q Consensus       237 ~  237 (240)
                      .
T Consensus       312 ~  312 (365)
T PF04443_consen  312 A  312 (365)
T ss_pred             c
Confidence            4

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.44  E-value=8.6e-13  Score=98.84  Aligned_cols=98  Identities=22%  Similarity=0.284  Sum_probs=76.5

Q ss_pred             chhhHhhcCCCCCCCC-CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhh
Q 039504            4 HFTVLSEADEDQIPEV-AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIY   82 (240)
Q Consensus         4 ~~~~l~~~~~~~~~~~-~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~   82 (240)
                      +|.+..+.......+. ...++|++.++||||+         +|.++....    .    ..++.++|+++ .+|++|.+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~----~~~l~~~D~~l-~~Pl~H~~  190 (227)
T TIGR03089       129 DFAPEVRVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----R----AAGLPPGDRVL-VLAWTDLE  190 (227)
T ss_pred             chhhhhhccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----h----hcCCCCCCeEE-ecCCCchH
Confidence            4444444333332223 4567999999999986         455554443    1    44678999999 99999999


Q ss_pred             hhHHHHHHHhhcCceEEEccCCCHHHHHHHHHhccce
Q 039504           83 SLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVS  119 (240)
Q Consensus        83 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t  119 (240)
                      |+...++.++..|+++++.++|++..+++.|+++|+|
T Consensus       191 gl~~~~~~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       191 DFLATLLAPLAAGGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             HHHHHHHHHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence            9987899999999999999999999999999999986

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.27  E-value=2.7e-10  Score=98.19  Aligned_cols=216  Identities=15%  Similarity=0.140  Sum_probs=155.2

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ....+..++++-+.--++|+--++.++|..+++.+.....    .+.+.+..-++.+.+++...|+.+..+..+++|...
T Consensus       938 g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe----~~~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T 1013 (1363)
T KOG3628|consen  938 GLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKE----TCQLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPT 1013 (1363)
T ss_pred             cccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHH----HHccccCCceEEEecCccchhHHHHHHHHHHcCCce
Confidence            3455677999999999999999999999999999988776    667788888888888888888888889999999987


Q ss_pred             EEccC----CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhh------hccCCCCCHHHHHHHHHhCC
Q 039504           99 LLMQK----FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVV------LSGAAPLGKELEDALRSRVP  168 (240)
Q Consensus        99 v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v------~~~G~~~~~~~~~~~~~~~~  168 (240)
                      .+.++    .++..+++.++++++.-++.+-+.++.+.+..+.+..+++....-      +..-|.....+.+.+.+.|-
T Consensus      1014 ~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~s~vv~~~~RPr~ali~sf~klfa 1093 (1363)
T KOG3628|consen 1014 LLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSSSIVVPAEERPRIALIASFKKLFA 1093 (1363)
T ss_pred             eecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhcccccceeeecCCccHHHHHHHHHHHHH
Confidence            77764    678999999999999999999999999988777666555433222      22234444556666666551


Q ss_pred             -----CCcccccccccccccchhhccCCCCCC-----------------------CCCCCCccccccCCceEEEeeCCCC
Q 039504          169 -----QAILGQGYGMTEAGPVLSMCLGFAKQP-----------------------FPTKSGSCGTVVRNAELKVIDPETG  220 (240)
Q Consensus       169 -----~~~i~~~yG~tE~~~~~~~~~~~~~~~-----------------------~~~~~~~~G~~~~~~~v~i~d~~~~  220 (240)
                           ...+--.|++.=--.++... ....++                       .....-..|+..+++++.|++||+.
T Consensus      1094 ~igLsp~avStsys~r~Np~Ic~r~-~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk 1172 (1363)
T KOG3628|consen 1094 AIGLSPRAVSTSYSSRVNPFICLRS-YSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETK 1172 (1363)
T ss_pred             HcCCChhhhcccccccCChHhhhcc-ccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeCCccc
Confidence                 12233345444322222221 000000                       0000113388889999999999999


Q ss_pred             CCCCCCCCceEEEeCCCCC
Q 039504          221 ASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       221 ~~~~~g~~Gel~v~~~~~~  239 (240)
                      .+|.+|+.||||+.|++-+
T Consensus      1173 ~pc~dge~GEIW~~S~hnA 1191 (1363)
T KOG3628|consen 1173 GPCRDGELGEIWVNSAHNA 1191 (1363)
T ss_pred             cccccCCcceEEecccccc
Confidence            9999999999999998654

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.82  E-value=4.6e-08  Score=86.11  Aligned_cols=164  Identities=22%  Similarity=0.254  Sum_probs=114.4

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecch-HHhhhhHHHHHHHhhcCceE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPL-FHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ...++..+.+.||||+||.||++.-+|..+.+...+....    +.....+.+ .+.+. ..+........+.+..|..+
T Consensus       192 ~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~----f~~t~s~~~-~~~~~~~~~d~i~~~~~~~L~~~~~l  266 (1032)
T KOG1178|consen  192 VGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTT----FPPTGSDRF-TFKTSVYFDDTIQKFIGALLFNGNNL  266 (1032)
T ss_pred             eecccccceEeecccccccccccchhHHHHHhhhhhcccc----CCcCccchh-hhhheeecccchHHHHhhHhhcCcee
Confidence            3456678899999999999999999999998888776653    334555554 32221 12222222345666667766


Q ss_pred             EEccCC---CHHHHHHHHHhccceeeeechHHHHHHHhCCCCC-------------CCCccchhhhhccCCCCCHHHHHH
Q 039504           99 LLMQKF---EIGALLELIQRHRVSVAAVVPPLVLALAKNPMVA-------------DYDLSSIRVVLSGAAPLGKELEDA  162 (240)
Q Consensus        99 v~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~-------------~~~~~~lr~v~~~G~~~~~~~~~~  162 (240)
                      +.+...   .+.++.+.+.+++++..+.+|++.+.++......             ....+.+|...++||+....+...
T Consensus       267 ~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s  346 (1032)
T KOG1178|consen  267 LVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTS  346 (1032)
T ss_pred             ecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCccchhhhhh
Confidence            666443   3689999999999999999999988887754431             112246899999999999999887


Q ss_pred             HHHhCCCCcccccccccccccchhhc
Q 039504          163 LRSRVPQAILGQGYGMTEAGPVLSMC  188 (240)
Q Consensus       163 ~~~~~~~~~i~~~yG~tE~~~~~~~~  188 (240)
                      +.+.+...-...-|+.++......+.
T Consensus       347 ~~~~~~~~~~~~~y~s~~~~~~~s~~  372 (1032)
T KOG1178|consen  347 TFDLLAEIFFGLPYLSTDPTGLVSYD  372 (1032)
T ss_pred             hhhcccceeeeecccCCCCccceeHH
Confidence            77765332233448888887666553

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=98.33  E-value=3.4e-06  Score=73.83  Aligned_cols=212  Identities=18%  Similarity=0.134  Sum_probs=137.4

Q ss_pred             cEEEecCCCCCCCCceeeeehHHHHHHHHhhhc-----------CC-----CCCccccCCcEEEEecchHHhhhhHHHHH
Q 039504           26 PVALPFSSGTTGLPKGVVLTHKSLITSVAQQVD-----------GE-----NPNLYLTNGDVVLCVLPLFHIYSLNSVLL   89 (240)
Q Consensus        26 ~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~-----------~~-----~~~~~~~~~d~~l~~~p~~~~~g~~~~~~   89 (240)
                      ..+|.||.+++|.--+++++|. +..+.+-+..           ++     ...+.....+.++.......-.|+.+.++
T Consensus       252 ~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~  330 (1363)
T KOG3628|consen  252 YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVL  330 (1363)
T ss_pred             eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCcccccchhhhhh
Confidence            7899999999999999999998 5444332211           11     11334456677777777777788888899


Q ss_pred             HHhhcCceEEEccC---CCHHHHHHHHHhccceeeeechHHHHHHHhCCC-----------CCCCCccchhhhhccCCCC
Q 039504           90 CSLRAGAGVLLMQK---FEIGALLELIQRHRVSVAAVVPPLVLALAKNPM-----------VADYDLSSIRVVLSGAAPL  155 (240)
Q Consensus        90 ~~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~-----------~~~~~~~~lr~v~~~G~~~  155 (240)
                      .++++|.+.+.++.   ..|-.+.+++.+++++++..--..+.+....-.           ..-.+++++|.+++.=+.+
T Consensus       331 ~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~sslk~C~Vtc~~v  410 (1363)
T KOG3628|consen  331 VALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLSSLKGCMVTCTAV  410 (1363)
T ss_pred             hhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCCCccceeeeEEeeeec
Confidence            99999999888876   677889999999999998775444433322111           1114567899888888888


Q ss_pred             CHHHHHHHHHhCCC---------------------CcccccccccccccchhhccCCCCCCCC-----------------
Q 039504          156 GKELEDALRSRVPQ---------------------AILGQGYGMTEAGPVLSMCLGFAKQPFP-----------------  197 (240)
Q Consensus       156 ~~~~~~~~~~~~~~---------------------~~i~~~yG~tE~~~~~~~~~~~~~~~~~-----------------  197 (240)
                      +.+..+...+.|-.                     .-.+..=++.|.+......+. ......                 
T Consensus       411 d~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~-~~~~~~~~e~ll~~~~L~~~~V~  489 (1363)
T KOG3628|consen  411 DTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPE-QMADTLPGEGLLSKEALKLNEVE  489 (1363)
T ss_pred             chHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcc-cccccCccceeeeccccccceEE
Confidence            88877766665511                     111112222444433332221 000000                 


Q ss_pred             ---------CCCCccccccCC-ceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          198 ---------TKSGSCGTVVRN-AELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       198 ---------~~~~~~G~~~~~-~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                               .....+|...|+ ..+.|+++++.+.|.++++|||||.++++.
T Consensus       490 v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~  541 (1363)
T KOG3628|consen  490 VDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLG  541 (1363)
T ss_pred             EcchhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEecCCcc
Confidence                     001133555554 557899999999999999999999998864

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.33  E-value=0.021  Score=48.88  Aligned_cols=42  Identities=10%  Similarity=-0.162  Sum_probs=29.3

Q ss_pred             cchhhhhccCCCCCHHHHHHHHHhCCCCcccc-cccccccccc
Q 039504          143 SSIRVVLSGAAPLGKELEDALRSRVPQAILGQ-GYGMTEAGPV  184 (240)
Q Consensus       143 ~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~-~yG~tE~~~~  184 (240)
                      +.+|.|-+.-..-...-...++..+++.++.. .|++||+..-
T Consensus       293 P~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~g  335 (606)
T PLN02247        293 PRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFG  335 (606)
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEE
Confidence            56777666444455666677877777877665 6999997643

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=96.99  E-value=0.0012  Score=55.84  Aligned_cols=32  Identities=31%  Similarity=0.458  Sum_probs=25.8

Q ss_pred             CCCCCCcEEEecCCCCCCC-CceeeeehHHHHH
Q 039504           20 AIEPDDPVALPFSSGTTGL-PKGVVLTHKSLIT   51 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~-pk~v~~s~~~l~~   51 (240)
                      .+.++.+.+...||||||. +|.+++|...+..
T Consensus        76 vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~  108 (528)
T PF03321_consen   76 VLTPGPPIYFALTSGTTGGKSKLIPYTKEFLKE  108 (528)
T ss_dssp             CTSSS--SEEEEEEEEETTEEEEEEESHHHHHH
T ss_pred             CCCCCCCCeEEeCCCCCCCCCceeeccHHHHHH
Confidence            4556678888899999999 9999999998765

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=96.62  E-value=0.076  Score=45.54  Aligned_cols=31  Identities=23%  Similarity=0.105  Sum_probs=25.2

Q ss_pred             CCCCCcEEEecCCCCCC-CCceeeeehHHHHH
Q 039504           21 IEPDDPVALPFSSGTTG-LPKGVVLTHKSLIT   51 (240)
Q Consensus        21 ~~~~~~~~i~~TSGtTG-~pk~v~~s~~~l~~   51 (240)
                      ..+..+.+...|||||| .+|.+++++..+..
T Consensus        98 L~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~  129 (612)
T PLN02620         98 LCSKPISEFLTSSGTSGGERKLMPTIEEELGR  129 (612)
T ss_pred             cCCCChhhhhhcCCCCCCceeeeecCHHHHHH
Confidence            44566667888999997 69999999998765

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=92.71  E-value=0.67  Score=38.02  Aligned_cols=90  Identities=24%  Similarity=0.287  Sum_probs=67.8

Q ss_pred             CCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc
Q 039504           23 PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ  102 (240)
Q Consensus        23 ~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~  102 (240)
                      |+.++++.        -....+|..++...+..+...+. ..++.++|++..+.+...  .+....++++..|...+..+
T Consensus         9 pd~~a~~~--------~~~~~~Ty~~l~~~v~~la~~L~-~~g~~~~~~V~i~~~n~~--~~~~~~~A~~~~G~~~v~l~   77 (417)
T PF00501_consen    9 PDRIALID--------DEGRSLTYKQLYERVRKLAAALR-KLGVKKGDRVAILLPNSI--EFVVAFLACLRAGAIPVPLD   77 (417)
T ss_dssp             TTSEEEEE--------TTTEEEEHHHHHHHHHHHHHHHH-HTTSSTTSEEEEEESSSH--HHHHHHHHHHHTT-EEEEEE
T ss_pred             CCceEEEE--------CCCEEEEHHHHHHHHHHHhhHHH-HhCCCccccccccCCccc--eeeeeecccccccccccccc
Confidence            56666665        22356888888888877766555 568899999888887643  33346789999999988885


Q ss_pred             -CCCHHHHHHHHHhccceeeee
Q 039504          103 -KFEIGALLELIQRHRVSVAAV  123 (240)
Q Consensus       103 -~~~~~~~~~~i~~~~~t~l~~  123 (240)
                       ....+.+...+++.+++++++
T Consensus        78 ~~~~~~~~~~~l~~~~~~~ii~   99 (417)
T PF00501_consen   78 PSLSEDELRHILRQSGPKVIIT   99 (417)
T ss_dssp             TTSSHHHHHHHHHHHTESEEEE
T ss_pred             cccccccccccccccceeEEEE
Confidence             478899999999999999996

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PLN03052 acetate--CoA ligase; Provisional

Probab=91.57  E-value=2.1  Score=38.39  Aligned_cols=101  Identities=16%  Similarity=0.183  Sum_probs=72.0

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .|+.++.+....+..+.+ ...+|...|...+..+...+. ..++.++|++..++|..-..-  ..+++++..|+..+..
T Consensus       188 ~pd~~Ai~~~~e~~~~~~-~~~~Ty~eL~~~v~~lA~~L~-~~Gv~~GdrVai~~pn~~e~v--ia~LA~~~~Gav~vpi  263 (728)
T PLN03052        188 TDDSIAIIWRDEGSDDLP-VNRMTLSELRSQVSRVANALD-ALGFEKGDAIAIDMPMNVHAV--IIYLAIILAGCVVVSI  263 (728)
T ss_pred             CCCCeEEEEECCCCCCCc-eEEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHHHH--HHHHHHHHcCCEEEee
Confidence            355666554333221222 245788898888877666554 468999999999998644322  3578888899888877


Q ss_pred             c-CCCHHHHHHHHHhccceeeeechH
Q 039504          102 Q-KFEIGALLELIQRHRVSVAAVVPP  126 (240)
Q Consensus       102 ~-~~~~~~~~~~i~~~~~t~l~~~p~  126 (240)
                      . .+.++++...+++.+++++++...
T Consensus       264 ~p~~~~~~l~~rl~~~~~k~lit~d~  289 (728)
T PLN03052        264 ADSFAPSEIATRLKISKAKAIFTQDV  289 (728)
T ss_pred             CCCCCHHHHHHHHHhcCceEEEEcCc
Confidence            4 588999999999999999887654

>PLN02654 acetate-CoA ligase

Probab=91.21  E-value=2.2  Score=37.77  Aligned_cols=82  Identities=23%  Similarity=0.274  Sum_probs=64.9

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  120 (240)
                      ..+|...|...+..+...+. ..+++++|++..++|..-.  +...+++++..|+..+... .+..+.+...+++.++.+
T Consensus       119 ~~~Ty~eL~~~v~~lA~~L~-~~Gv~~GdrV~i~~pn~~e--~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~  195 (666)
T PLN02654        119 ASLTYSELLDRVCQLANYLK-DVGVKKGDAVVIYLPMLME--LPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKV  195 (666)
T ss_pred             EEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceE
Confidence            46889999888877666554 5689999999999986543  3335788999998888764 588999999999999999


Q ss_pred             eeechH
Q 039504          121 AAVVPP  126 (240)
Q Consensus       121 l~~~p~  126 (240)
                      +++...
T Consensus       196 li~~~~  201 (666)
T PLN02654        196 VITCNA  201 (666)
T ss_pred             EEEcCc
Confidence            887654

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=91.09  E-value=2.2  Score=37.64  Aligned_cols=81  Identities=19%  Similarity=0.169  Sum_probs=64.8

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc-cCCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM-QKFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~  120 (240)
                      ..+|...+...+..+...+. ..++.++|++..++|..-..-  ..+++++..|+..+.. +.+.++.+...+++.++++
T Consensus        91 ~~~Ty~eL~~~v~~lA~~L~-~~Gv~~GDrV~i~~~n~~e~~--~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~  167 (647)
T PTZ00237         91 IKLTYYQLYEKVCEFSRVLL-NLNISKNDNVLIYMANTLEPL--IAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKL  167 (647)
T ss_pred             EEEEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHHH--HHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCE
Confidence            56899999888877766554 468999999999998654433  3578888999888776 4689999999999999999


Q ss_pred             eeech
Q 039504          121 AAVVP  125 (240)
Q Consensus       121 l~~~p  125 (240)
                      +++..
T Consensus       168 li~~~  172 (647)
T PTZ00237        168 IITTN  172 (647)
T ss_pred             EEEcc
Confidence            88754

>PLN02736 long-chain acyl-CoA synthetase

Probab=91.06  E-value=3.1  Score=36.66  Aligned_cols=89  Identities=12%  Similarity=-0.068  Sum_probs=68.4

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  120 (240)
                      ..+|..++...+..+...+. ..++.++|++..+++....  +....++++..|+..+... ...++++..++++.++++
T Consensus        77 ~~lTy~el~~~v~~lA~~L~-~~Gv~~gd~Vai~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~  153 (651)
T PLN02736         77 KWMTYGEAGTARTAIGSGLV-QHGIPKGACVGLYFINRPE--WLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAA  153 (651)
T ss_pred             EEEEHHHHHHHHHHHHHHHH-HhCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCE
Confidence            34788888887776665544 4688999999988875543  3335788899998888764 588999999999999999


Q ss_pred             eeechHHHHHHHh
Q 039504          121 AAVVPPLVLALAK  133 (240)
Q Consensus       121 l~~~p~~~~~l~~  133 (240)
                      +++.+..+..+..
T Consensus       154 l~~~~~~~~~~~~  166 (651)
T PLN02736        154 IFCVPQTLNTLLS  166 (651)
T ss_pred             EEECHHHHHHHHH
Confidence            9998877665543

>PRK06839 acyl-CoA synthetase; Validated

Probab=90.96  E-value=3.1  Score=35.01  Aligned_cols=88  Identities=11%  Similarity=0.019  Sum_probs=67.5

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  120 (240)
                      ..+|..++...+..+...+...+++.+++++...++-...  +...+++++..|+..+..+ ...++++...+++.+++.
T Consensus        26 ~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~--~~~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~  103 (496)
T PRK06839         26 EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLE--YIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTV  103 (496)
T ss_pred             ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHH--HHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhcCceE
Confidence            4688899988887776655333578899999888875543  3346789999999888876 478888999999999999


Q ss_pred             eeechHHHHHH
Q 039504          121 AAVVPPLVLAL  131 (240)
Q Consensus       121 l~~~p~~~~~l  131 (240)
                      ++..+.....+
T Consensus       104 i~~~~~~~~~~  114 (496)
T PRK06839        104 LFVEKTFQNMA  114 (496)
T ss_pred             EEEcHHHHHHH
Confidence            98887765543

>PRK09274 peptide synthase; Provisional

Probab=90.84  E-value=2  Score=36.81  Aligned_cols=100  Identities=15%  Similarity=0.107  Sum_probs=69.1

Q ss_pred             CCCcEEEecCCCCC-CCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           23 PDDPVALPFSSGTT-GLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        23 ~~~~~~i~~TSGtT-G~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      |+.++.+....++. ...+...+|..++...+..+...+. ..++.++|++..+++....  +...+++++..|+..+..
T Consensus        20 p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~-~~g~~~gd~V~~~~~n~~~--~~~~~la~~~~G~~~v~l   96 (552)
T PRK09274         20 PDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLN-AAGIGRGMRAVLMVTPSLE--FFALTFALFKAGAVPVLV   96 (552)
T ss_pred             CCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCcHH--HHHHHHHHHHcCeEEEEc
Confidence            45555554332221 1223335788888887776665544 4578999999988875543  333578999999998887


Q ss_pred             cC-CCHHHHHHHHHhccceeeeech
Q 039504          102 QK-FEIGALLELIQRHRVSVAAVVP  125 (240)
Q Consensus       102 ~~-~~~~~~~~~i~~~~~t~l~~~p  125 (240)
                      .+ ...+++...+++.++..++..+
T Consensus        97 ~~~~~~~~l~~~l~~~~~~~~i~~~  121 (552)
T PRK09274         97 DPGMGIKNLKQCLAEAQPDAFIGIP  121 (552)
T ss_pred             CCCccHHHHHHHHHhcCCCEEEecc
Confidence            54 6778888999999999887754

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=90.59  E-value=2.5  Score=36.95  Aligned_cols=99  Identities=19%  Similarity=0.195  Sum_probs=71.4

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .|+.++.+.... .+|  ....+|..++...+..+...+. ..++.++|++..++|....+  ...+++++..|+..+..
T Consensus        70 ~p~~~Al~~~~~-~~~--~~~~~Ty~eL~~~v~~lA~~L~-~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~v~i  143 (625)
T TIGR02188        70 RPDKVAIIWEGD-EPG--EVRKITYRELHREVCRFANVLK-SLGVKKGDRVAIYMPMIPEA--AIAMLACARIGAIHSVV  143 (625)
T ss_pred             CCCCeEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHH--HHHHHHHHHhCCEEecc
Confidence            456666654322 122  2346889998888777666554 46889999999998865433  33578899999888876


Q ss_pred             c-CCCHHHHHHHHHhccceeeeechH
Q 039504          102 Q-KFEIGALLELIQRHRVSVAAVVPP  126 (240)
Q Consensus       102 ~-~~~~~~~~~~i~~~~~t~l~~~p~  126 (240)
                      . .+.++.+...+++.+++++++...
T Consensus       144 ~~~~~~~~l~~~l~~~~~~~li~~~~  169 (625)
T TIGR02188       144 FGGFSAEALADRINDAGAKLVITADE  169 (625)
T ss_pred             CCCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            4 588899999999999998887653

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=90.58  E-value=0.16  Score=43.86  Aligned_cols=30  Identities=20%  Similarity=0.154  Sum_probs=25.0

Q ss_pred             CCCCCcEEEecCCCCC-CCCceeeeehHHHH
Q 039504           21 IEPDDPVALPFSSGTT-GLPKGVVLTHKSLI   50 (240)
Q Consensus        21 ~~~~~~~~i~~TSGtT-G~pk~v~~s~~~l~   50 (240)
                      ..++.+.+...||||| |.+|.+++|.+.+.
T Consensus        97 L~~~pi~~f~~SSGTT~g~~K~IP~T~~~l~  127 (597)
T PLN02249         97 LSSHPITEFLTSSGTSAGERKLMPTIEEDID  127 (597)
T ss_pred             eCCCchhhhcccCCCCCCceeEEeccHHHHH
Confidence            4566677888899999 89999999997765

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=89.44  E-value=3.7  Score=36.07  Aligned_cols=98  Identities=17%  Similarity=0.153  Sum_probs=70.7

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .|+.++.+.....   ......+|..++...+..+...+. ..++.++|++..+++....+  ...+++++..|+..+..
T Consensus        80 ~p~~~Al~~~~~~---~~~~~~lTy~eL~~~v~~lA~~L~-~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~v~l  153 (637)
T PRK00174         80 RGDKVAIIWEGDD---PGDSRKITYRELHREVCRFANALK-SLGVKKGDRVAIYMPMIPEA--AVAMLACARIGAVHSVV  153 (637)
T ss_pred             CCCCeEEEEECCC---CCceEEEEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCCEEEec
Confidence            3566666542211   012456899999888877766554 46889999999888755433  23578899999888877


Q ss_pred             c-CCCHHHHHHHHHhccceeeeech
Q 039504          102 Q-KFEIGALLELIQRHRVSVAAVVP  125 (240)
Q Consensus       102 ~-~~~~~~~~~~i~~~~~t~l~~~p  125 (240)
                      . .+.++++...+++.++.++++..
T Consensus       154 ~~~~~~~~l~~~l~~~~~~~li~~~  178 (637)
T PRK00174        154 FGGFSAEALADRIIDAGAKLVITAD  178 (637)
T ss_pred             CCCCCHHHHHHHHHhcCCcEEEEcC
Confidence            5 58889999999999999888754

>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family

Probab=89.35  E-value=4.5  Score=29.71  Aligned_cols=91  Identities=19%  Similarity=0.201  Sum_probs=56.6

Q ss_pred             CcEEEEecch-HHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceeeeechH------HHHHHHhCCCCCCC
Q 039504           69 GDVVLCVLPL-FHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVAAVVPP------LVLALAKNPMVADY  140 (240)
Q Consensus        69 ~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~------~~~~l~~~~~~~~~  140 (240)
                      +.+++.+.+- .|..|..+.....-..|..++... ...++++.+.+++.++.++..+-+      .++.+.+..+....
T Consensus        85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~  164 (197)
T TIGR02370        85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEGY  164 (197)
T ss_pred             CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcCC
Confidence            3444444442 777788755555667788888765 578899999999999998776542      22333333222211


Q ss_pred             CccchhhhhccCCCCCHHHHH
Q 039504          141 DLSSIRVVLSGAAPLGKELED  161 (240)
Q Consensus       141 ~~~~lr~v~~~G~~~~~~~~~  161 (240)
                       .+++ .+++||.++.++..+
T Consensus       165 -~~~v-~i~vGG~~~~~~~~~  183 (197)
T TIGR02370       165 -RDSV-KFMVGGAPVTQDWAD  183 (197)
T ss_pred             -CCCC-EEEEEChhcCHHHHH
Confidence             1122 377899888765444

This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.

>PRK07788 acyl-CoA synthetase; Validated

Probab=89.16  E-value=2.5  Score=36.28  Aligned_cols=86  Identities=21%  Similarity=0.174  Sum_probs=66.1

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+. ..++.++|++...++..-  .+...+++++..|+..+..+. ...+++...+++.+++.+
T Consensus        74 ~~Ty~el~~~~~~la~~L~-~~gi~~gd~V~i~~~n~~--~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i  150 (549)
T PRK07788         74 TLTYAELDEQSNALARGLL-ALGVRAGDGVAVLARNHR--GFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKAL  150 (549)
T ss_pred             ceeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCH--HHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEE
Confidence            5788888877766655443 457889999998876543  333467899999999988764 788999999999999999


Q ss_pred             eechHHHHHH
Q 039504          122 AVVPPLVLAL  131 (240)
Q Consensus       122 ~~~p~~~~~l  131 (240)
                      +..+.+...+
T Consensus       151 i~~~~~~~~~  160 (549)
T PRK07788        151 VYDDEFTDLL  160 (549)
T ss_pred             EECchhHHHH
Confidence            9887766554

>PRK07529 AMP-binding domain protein; Validated

Probab=89.16  E-value=2.9  Score=36.66  Aligned_cols=98  Identities=20%  Similarity=0.210  Sum_probs=68.1

Q ss_pred             CCCCcEEEecCCC-CCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEE
Q 039504           22 EPDDPVALPFSSG-TTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLL  100 (240)
Q Consensus        22 ~~~~~~~i~~TSG-tTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~  100 (240)
                      .|+.++.+....+ ...  +...+|...+...+..+...+. ..++.++|++..++|....+  ...+++++..|..+.+
T Consensus        38 ~p~~~Al~~~~~~~~~~--~~~~~Ty~eL~~~v~~~A~~L~-~~Gi~~gd~V~i~~~n~~e~--~~~~lA~~~~Gi~~pi  112 (632)
T PRK07529         38 HPDAPALSFLLDADPLD--RPETWTYAELLADVTRTANLLH-SLGVGPGDVVAFLLPNLPET--HFALWGGEAAGIANPI  112 (632)
T ss_pred             CCCCceEEeecccCCCC--CCceeEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHH--HHHHHHHHHhCEEEeC
Confidence            4566776655332 222  3456888888887776665444 45889999999999865443  2356777788854333


Q ss_pred             ccCCCHHHHHHHHHhccceeeeec
Q 039504          101 MQKFEIGALLELIQRHRVSVAAVV  124 (240)
Q Consensus       101 ~~~~~~~~~~~~i~~~~~t~l~~~  124 (240)
                      .+...++++..++++.++.+++..
T Consensus       113 ~~~~~~~~i~~~l~~~~~~~li~~  136 (632)
T PRK07529        113 NPLLEPEQIAELLRAAGAKVLVTL  136 (632)
T ss_pred             CCcCCHHHHHHHHHhcCCcEEEEe
Confidence            356888999999999999988875

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=89.13  E-value=3.8  Score=36.18  Aligned_cols=81  Identities=21%  Similarity=0.145  Sum_probs=63.9

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  120 (240)
                      ..+|...+...+..+...+. ..++.++|++..++|..-..-  ..+++++..|+..+... .+..+.+...+++.++.+
T Consensus       113 ~~~Ty~eL~~~v~~lA~~L~-~~Gv~~GdrV~i~~~n~~e~~--~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~  189 (652)
T TIGR01217       113 APVTWAELRRQVASLAAALR-ALGVRPGDRVSGYLPNIPQAV--VAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKL  189 (652)
T ss_pred             eEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHHHH--HHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcE
Confidence            45889999888877776554 458999999999998654433  35778888898887765 588899999999999998


Q ss_pred             eeech
Q 039504          121 AAVVP  125 (240)
Q Consensus       121 l~~~p  125 (240)
                      +++..
T Consensus       190 li~~~  194 (652)
T TIGR01217       190 LFTVD  194 (652)
T ss_pred             EEEcc
Confidence            88754

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK08316 acyl-CoA synthetase; Validated

Probab=88.97  E-value=3.9  Score=34.62  Aligned_cols=88  Identities=19%  Similarity=0.105  Sum_probs=66.1

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  120 (240)
                      ..+|..++...+..+...+. ..++.++|++..+.+....  +...+++++..|...+... ....+++..++++.++..
T Consensus        35 ~~~Ty~~l~~~~~~~a~~L~-~~gi~~~~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~  111 (523)
T PRK08316         35 RSWTYAELDAAVNRVAAALL-DLGLKKGDRVAALGHNSDA--YALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARA  111 (523)
T ss_pred             ceeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHH--HHHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCE
Confidence            45788888777766655444 3478899999988876554  2335789999998888876 477889999999999999


Q ss_pred             eeechHHHHHHH
Q 039504          121 AAVVPPLVLALA  132 (240)
Q Consensus       121 l~~~p~~~~~l~  132 (240)
                      ++........+.
T Consensus       112 ii~~~~~~~~~~  123 (523)
T PRK08316        112 FLVDPALAPTAE  123 (523)
T ss_pred             EEEccchHHHHH
Confidence            988776655443

>PLN02574 4-coumarate--CoA ligase-like

Probab=88.93  E-value=4.1  Score=35.10  Aligned_cols=87  Identities=24%  Similarity=0.256  Sum_probs=64.8

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++......+...+....++.++|++..+.+...  .+...+++++..|+..+...+ ...+++...+++.++..+
T Consensus        66 ~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~--~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~  143 (560)
T PLN02574         66 SISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSV--YFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLA  143 (560)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcc--hHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEE
Confidence            36778887777666665542267899999998887553  333357889999988887754 778899999999999988


Q ss_pred             eechHHHHHH
Q 039504          122 AVVPPLVLAL  131 (240)
Q Consensus       122 ~~~p~~~~~l  131 (240)
                      +..+.....+
T Consensus       144 ~~~~~~~~~~  153 (560)
T PLN02574        144 FTSPENVEKL  153 (560)
T ss_pred             EECHHHHHHH
Confidence            8877665544

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=88.87  E-value=4.3  Score=35.76  Aligned_cols=98  Identities=20%  Similarity=0.162  Sum_probs=69.7

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .|+.++.+....  .|  ....+|..++...+..+...+. ..++.++|++..++|.....  ...+++++..|+..+..
T Consensus        97 ~~~~~Al~~~~~--~~--~~~~~Ty~eL~~~v~~lA~~L~-~~Gv~~gd~V~i~~~n~~e~--v~~~lA~~~~Gav~v~l  169 (655)
T PRK03584         97 RDDRPAIIFRGE--DG--PRRELSWAELRRQVAALAAALR-ALGVGPGDRVAAYLPNIPET--VVAMLATASLGAIWSSC  169 (655)
T ss_pred             CCCCeEEEEECC--CC--ceEEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCcEEEee
Confidence            355565554322  11  1346888888888777665554 45889999999998855432  33578899999888776


Q ss_pred             c-CCCHHHHHHHHHhccceeeeechH
Q 039504          102 Q-KFEIGALLELIQRHRVSVAAVVPP  126 (240)
Q Consensus       102 ~-~~~~~~~~~~i~~~~~t~l~~~p~  126 (240)
                      . .+..+.+...+++.++.++++...
T Consensus       170 ~~~~~~~~l~~~l~~~~~~~li~~~~  195 (655)
T PRK03584        170 SPDFGVQGVLDRFGQIEPKVLIAVDG  195 (655)
T ss_pred             CCCCCHHHHHHHHHHcCCcEEEEccc
Confidence            5 578899999999999998887653

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=88.63  E-value=3  Score=35.71  Aligned_cols=87  Identities=20%  Similarity=0.045  Sum_probs=66.9

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc-cCCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM-QKFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~  120 (240)
                      -.+|...|...+..+...+....++ +||+++.++|..-...  ..++++...|+..... +.+.++.+..-+.+-++.+
T Consensus        39 ~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~--~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~  115 (528)
T COG0365          39 RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAV--IALLATARIGAIPAVVSPGLSAEAVADRIADLGPKV  115 (528)
T ss_pred             eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHH--HHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCE
Confidence            5788888888887776655434567 9999999999765533  3578888888776665 5699999999999999999


Q ss_pred             eeechHHHHHH
Q 039504          121 AAVVPPLVLAL  131 (240)
Q Consensus       121 l~~~p~~~~~l  131 (240)
                      +++....++..
T Consensus       116 vit~d~~~~~g  126 (528)
T COG0365         116 LIADDGTFRNG  126 (528)
T ss_pred             EEEeccccccc
Confidence            99876666543

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=88.55  E-value=4.7  Score=34.09  Aligned_cols=85  Identities=16%  Similarity=0.088  Sum_probs=64.4

Q ss_pred             eehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceeee
Q 039504           44 LTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVAA  122 (240)
Q Consensus        44 ~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~  122 (240)
                      +|..++...+..+...+. ..++++++++..+.|....  +...+++++..|+..+..+ ......+...+++.++..+.
T Consensus        32 ~Ty~~l~~~~~~~a~~L~-~~g~~~~~~V~l~~~~~~~--~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~  108 (521)
T PRK06187         32 TTYAELDERVNRLANALR-ALGVKKGDRVAVFDWNSHE--YLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVL  108 (521)
T ss_pred             EcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHH--HHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEE
Confidence            788888777766655443 3578899999988886553  3335789999999888876 47788899999999999888


Q ss_pred             echHHHHHH
Q 039504          123 VVPPLVLAL  131 (240)
Q Consensus       123 ~~p~~~~~l  131 (240)
                      ........+
T Consensus       109 ~~~~~~~~~  117 (521)
T PRK06187        109 VDSEFVPLL  117 (521)
T ss_pred             EcchHHHHH
Confidence            877665544

>PLN03102 acyl-activating enzyme; Provisional

Probab=88.48  E-value=2.5  Score=36.58  Aligned_cols=83  Identities=13%  Similarity=0.158  Sum_probs=64.6

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+. ..++.++|++..++|..-  .+...+++++..|+.++... ....+++...+++.+++.+
T Consensus        39 ~~Ty~eL~~~~~~~a~~L~-~~Gl~~gd~Vai~~~n~~--e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~i  115 (579)
T PLN03102         39 RFTWPQTYDRCCRLAASLI-SLNITKNDVVSVLAPNTP--AMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKIL  115 (579)
T ss_pred             EEEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcH--HHHHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEE
Confidence            5788888887777666544 457899999998888543  33345788999998888775 4788999999999999999


Q ss_pred             eechHHH
Q 039504          122 AVVPPLV  128 (240)
Q Consensus       122 ~~~p~~~  128 (240)
                      +..+...
T Consensus       116 i~~~~~~  122 (579)
T PLN03102        116 FVDRSFE  122 (579)
T ss_pred             EEChhhH
Confidence            8876544

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=87.84  E-value=2.6  Score=37.82  Aligned_cols=103  Identities=14%  Similarity=0.148  Sum_probs=74.3

Q ss_pred             eeeehHHHHHHHHhhhcCCCCC--ccccCC-----------cEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHH
Q 039504           42 VVLTHKSLITSVAQQVDGENPN--LYLTNG-----------DVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIG  107 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~--~~~~~~-----------d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~  107 (240)
                      ..+|...+...+..+..++...  .|+.++           |++..+++...  .+....++++..|+..+... .+.++
T Consensus        90 ~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~--ew~~~~lA~~~~Gav~Vpl~~~~~~~  167 (746)
T PTZ00342         90 NYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSI--NWLVADLACMLSGVTTLVMHSKFSID  167 (746)
T ss_pred             eeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCH--HHHHHHHHHHHcCCeEEEecCCCCHH
Confidence            3578888888887776655422  478887           88888776543  34446788999998888874 58899


Q ss_pred             HHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhc
Q 039504          108 ALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLS  150 (240)
Q Consensus       108 ~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~  150 (240)
                      ++..++++.++.++++....+..+.....    .++.++.+++
T Consensus       168 el~~il~~s~~~~lv~~~~~~~~l~~~~~----~~~~l~~ii~  206 (746)
T PTZ00342        168 VIVDILNETKLEWLCLDLDLVEGLLERKN----ELPHLKKLII  206 (746)
T ss_pred             HHHHHHhcCCCCEEEEcHHHHHHHHHhhc----cCCCceEEEE
Confidence            99999999999999998777777655322    2344555444

>PLN02614 long-chain acyl-CoA synthetase

Probab=87.81  E-value=3.5  Score=36.49  Aligned_cols=88  Identities=13%  Similarity=-0.031  Sum_probs=67.8

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|...+...+..+...+. ..++.++|++...++....  +....++++..|+..+... ...++++..++++.++.++
T Consensus        79 ~~Ty~el~~~v~~lA~~L~-~~Gv~~Gd~Vai~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~v  155 (666)
T PLN02614         79 WQTYQEVYDIVIKLGNSLR-SVGVKDEAKCGIYGANSPE--WIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIV  155 (666)
T ss_pred             EeEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEE
Confidence            4688888887776665544 4688999999988885543  4446789999999888875 5788999999999999999


Q ss_pred             eechHHHHHHHh
Q 039504          122 AVVPPLVLALAK  133 (240)
Q Consensus       122 ~~~p~~~~~l~~  133 (240)
                      ++....+..+..
T Consensus       156 i~~~~~~~~~~~  167 (666)
T PLN02614        156 FVEEKKISELFK  167 (666)
T ss_pred             EECHHHHHHHHH
Confidence            988776655543

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=87.78  E-value=4.1  Score=36.05  Aligned_cols=88  Identities=15%  Similarity=0.027  Sum_probs=67.5

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  120 (240)
                      ..+|...+...+..+...+. ..++.++|++..+++....  +....++++..|+..+... ....+++..++++.++++
T Consensus        76 ~~~Ty~el~~~v~~lA~~L~-~~Gv~~gd~Vai~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~  152 (660)
T PLN02861         76 VWLTYKEVYDAAIRIGSAIR-SRGVNPGDRCGIYGSNCPE--WIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSI  152 (660)
T ss_pred             eEEEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCE
Confidence            35788888888777666544 4588999999988875543  3345788999998888775 578899999999999999


Q ss_pred             eeechHHHHHHH
Q 039504          121 AAVVPPLVLALA  132 (240)
Q Consensus       121 l~~~p~~~~~l~  132 (240)
                      +++....+..+.
T Consensus       153 v~~~~~~~~~~~  164 (660)
T PLN02861        153 AFVQESKISSIL  164 (660)
T ss_pred             EEECHHHHHHHH
Confidence            998776655543

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=87.73  E-value=5.3  Score=33.77  Aligned_cols=84  Identities=20%  Similarity=0.174  Sum_probs=62.7

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+. ..++.++|++..+.+....+  ...+++++..|+..+..+ ......+.+.+++.+++.+
T Consensus        30 ~~Ty~~l~~~~~~~a~~L~-~~gv~~g~~V~l~~~~~~~~--~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i  106 (513)
T PRK07656         30 RLTYAELNARVRRAAAALA-ALGIGKGDRVAIWAPNSPHW--VIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKAL  106 (513)
T ss_pred             ceeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCChHH--HHHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCceEE
Confidence            4788888777666554433 34788999999888765432  235788999999888775 4778889999999999998


Q ss_pred             eechHHHH
Q 039504          122 AVVPPLVL  129 (240)
Q Consensus       122 ~~~p~~~~  129 (240)
                      ........
T Consensus       107 i~~~~~~~  114 (513)
T PRK07656        107 FVLGLFLG  114 (513)
T ss_pred             EEchhhHH
Confidence            88766544

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=87.64  E-value=6  Score=33.56  Aligned_cols=84  Identities=12%  Similarity=0.045  Sum_probs=63.5

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+. ..++.++|++..+.+....+-  ..+++++..|+..+... ...++++...+++.+++.+
T Consensus        37 ~~ty~~l~~~v~~la~~L~-~~g~~~~~~v~i~~~n~~~~~--~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l  113 (517)
T PRK08008         37 RYSYLELNEEINRTANLFY-SLGIRKGDKVALHLDNCPEFI--FCWFGLAKIGAIMVPINARLLREESAWILQNSQASLL  113 (517)
T ss_pred             eeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHHHH--HHHHHHHHcCeEEEEcCcccCHHHHHHHHHhcCceEE
Confidence            4677888777766655443 357889999998887654433  35778999998888775 5788999999999999998


Q ss_pred             eechHHHH
Q 039504          122 AVVPPLVL  129 (240)
Q Consensus       122 ~~~p~~~~  129 (240)
                      +..+....
T Consensus       114 ~~~~~~~~  121 (517)
T PRK08008        114 VTSAQFYP  121 (517)
T ss_pred             EEecchhH
Confidence            88776543

>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins

Probab=87.62  E-value=6.6  Score=28.91  Aligned_cols=89  Identities=18%  Similarity=0.218  Sum_probs=54.0

Q ss_pred             CcEEEEecch-HHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceeeeechH------HHHHHHhCCCCCCC
Q 039504           69 GDVVLCVLPL-FHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVAAVVPP------LVLALAKNPMVADY  140 (240)
Q Consensus        69 ~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~------~~~~l~~~~~~~~~  140 (240)
                      +.+++.+.+- .|..|..+.-...-..|..++... ...++++.+.+.+.++.++..+-+      .+..+.+..+....
T Consensus        83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~  162 (201)
T cd02070          83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGL  162 (201)
T ss_pred             CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCC
Confidence            3445555553 677777644444557788887664 578899999999999998766442      22333333222211


Q ss_pred             CccchhhhhccCCCCCHHH
Q 039504          141 DLSSIRVVLSGAAPLGKEL  159 (240)
Q Consensus       141 ~~~~lr~v~~~G~~~~~~~  159 (240)
                       ...+ .|++||.+++.+.
T Consensus       163 -~~~~-~i~vGG~~~~~~~  179 (201)
T cd02070         163 -RDKV-KVMVGGAPVNQEF  179 (201)
T ss_pred             -CcCC-eEEEECCcCCHHH
Confidence             0122 3778888888754

A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=87.53  E-value=3.4  Score=36.84  Aligned_cols=89  Identities=13%  Similarity=0.029  Sum_probs=69.3

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  120 (240)
                      ..+|...+...+..+..++. ..++.++|++..+++....  +....++++..|+..+... ...++++...+++.++.+
T Consensus       105 ~~~Ty~el~~~v~~lA~~L~-~lG~~~gd~Vai~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~  181 (696)
T PLN02387        105 EWITYGQVFERVCNFASGLV-ALGHNKEERVAIFADTRAE--WLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTT  181 (696)
T ss_pred             EEEEHHHHHHHHHHHHHHHH-HhCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCE
Confidence            45788888887777666544 4688999999888875443  3346788999999888764 588899999999999999


Q ss_pred             eeechHHHHHHHh
Q 039504          121 AAVVPPLVLALAK  133 (240)
Q Consensus       121 l~~~p~~~~~l~~  133 (240)
                      +++....+..+.+
T Consensus       182 li~~~~~~~~l~~  194 (696)
T PLN02387        182 VICDSKQLKKLID  194 (696)
T ss_pred             EEECHHHHHHHHH
Confidence            9998877776654

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=87.52  E-value=2.2  Score=34.79  Aligned_cols=66  Identities=20%  Similarity=0.185  Sum_probs=52.3

Q ss_pred             ccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceeeeechHHHHHH
Q 039504           64 LYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVAAVVPPLVLAL  131 (240)
Q Consensus        64 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l  131 (240)
                      .++.++|++..++|....  +...+++++..|..++... ......+..++++.+++.+...+.....+
T Consensus        20 ~g~~~gd~v~l~~~n~~~--~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~   86 (408)
T TIGR01733        20 GGVGPGDRVAVLLERSAE--LVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDSALASRL   86 (408)
T ss_pred             hCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcCchhhhc
Confidence            468899999988886643  3335789999999988875 47788899999999999998887765544

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=87.37  E-value=4.9  Score=34.48  Aligned_cols=98  Identities=23%  Similarity=0.265  Sum_probs=68.7

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .|+.++++..-.+   .++...+|..++......+...+. ..++.++|++..+++....+  ...+++++..|+..+..
T Consensus        37 ~p~~~A~~~~~~~---~~~~~~~Ty~el~~~~~~~a~~L~-~~g~~~g~~Val~~~n~~e~--~~~~la~~~~G~~~vpl  110 (547)
T PRK13295         37 CPDKTAVTAVRLG---TGAPRRFTYRELAALVDRVAVGLA-RLGVGRGDVVSCQLPNWWEF--TVLYLACSRIGAVLNPL  110 (547)
T ss_pred             CCCceEEEecCCC---ccccceeeHHHHHHHHHHHHHHHH-HhCCCCCCEEEEECCCChHH--HHHHHHHHhcCcEEecc
Confidence            3556666543322   233346888888777766655443 45789999999888865543  33578899999998877


Q ss_pred             c-CCCHHHHHHHHHhccceeeeech
Q 039504          102 Q-KFEIGALLELIQRHRVSVAAVVP  125 (240)
Q Consensus       102 ~-~~~~~~~~~~i~~~~~t~l~~~p  125 (240)
                      . ....+++...+++.+++.+....
T Consensus       111 ~~~~~~~~l~~~l~~~~~~~li~~~  135 (547)
T PRK13295        111 MPIFRERELSFMLKHAESKVLVVPK  135 (547)
T ss_pred             ccccCHHHHHHHHHhcCceEEEEec
Confidence            5 47788899999999999887654

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=87.20  E-value=3.4  Score=35.58  Aligned_cols=85  Identities=14%  Similarity=0.102  Sum_probs=64.9

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+....++.++|++..+++....  +...+++++..|+..+... .+..+++...+++.++..+
T Consensus        49 ~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~--~~~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~i  126 (562)
T PRK05677         49 TLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQ--YPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKAL  126 (562)
T ss_pred             eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHH--HHHHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEE
Confidence            578999888877776655323478999999998886543  3335789999999988875 4778899999999999998


Q ss_pred             eechHHHH
Q 039504          122 AVVPPLVL  129 (240)
Q Consensus       122 ~~~p~~~~  129 (240)
                      +.......
T Consensus       127 i~~~~~~~  134 (562)
T PRK05677        127 VCLANMAH  134 (562)
T ss_pred             EEecchhh
Confidence            87665443

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=87.19  E-value=3.2  Score=35.65  Aligned_cols=93  Identities=16%  Similarity=0.152  Sum_probs=72.5

Q ss_pred             eeeeehHHHHHHHHhhhcCCCC-CccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccc
Q 039504           41 GVVLTHKSLITSVAQQVDGENP-NLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRV  118 (240)
Q Consensus        41 ~v~~s~~~l~~~~~~~~~~~~~-~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~  118 (240)
                      +..+|+.++...+..++..+.. .++++.+|++...+|....+..  ..++++..|+.+.... .++...+...++..++
T Consensus        43 g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~--~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~  120 (537)
T KOG1176|consen   43 GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVE--LALAVPMAGAVLNPLNPRLTASEIAKQLKDSKP  120 (537)
T ss_pred             CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHH--HHHHHHHcCccccccCcccCHHHHHHHHHhcCC
Confidence            6788999998888776654432 2347899999999997665444  4678888888877764 5899999999999999


Q ss_pred             eeeeechHHHHHHHhCC
Q 039504          119 SVAAVVPPLVLALAKNP  135 (240)
Q Consensus       119 t~l~~~p~~~~~l~~~~  135 (240)
                      +++++....+..+....
T Consensus       121 kiif~d~~~~~~i~~~~  137 (537)
T KOG1176|consen  121 KLIFVDEDFYDKISEAT  137 (537)
T ss_pred             eEEEEcCchHHHHHHHH
Confidence            99999888877775543

>PLN02246 4-coumarate--CoA ligase

Probab=87.16  E-value=5.8  Score=33.92  Aligned_cols=85  Identities=18%  Similarity=0.150  Sum_probs=63.4

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|+.++......+...+. ..++.++|++..+++-..  .+...+++++..|...+... .....++..++++.++..+
T Consensus        50 ~~ty~el~~~~~~la~~L~-~~g~~~gd~V~i~~~~~~--~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l  126 (537)
T PLN02246         50 VYTYADVELLSRRVAAGLH-KLGIRQGDVVMLLLPNCP--EFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLI  126 (537)
T ss_pred             eeeHHHHHHHHHHHHHHHH-HhCCCCCCEEEEECCCCh--HHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEE
Confidence            5888888887766655443 357899999998877543  33346788889998888775 4778889999999999988


Q ss_pred             eechHHHHH
Q 039504          122 AVVPPLVLA  130 (240)
Q Consensus       122 ~~~p~~~~~  130 (240)
                      +........
T Consensus       127 i~~~~~~~~  135 (537)
T PLN02246        127 ITQSCYVDK  135 (537)
T ss_pred             EEccchHHH
Confidence            876655443

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=87.12  E-value=3.3  Score=35.02  Aligned_cols=86  Identities=16%  Similarity=0.125  Sum_probs=64.3

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+. ..++.++|++..+++....+-  ..+++++..|...+... ....+++...+++.+++.+
T Consensus        25 ~~ty~~l~~~v~~~a~~l~-~~g~~~~~~V~i~~~n~~~~~--~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~  101 (515)
T TIGR03098        25 TLTYAALSERVLALASGLR-GLGLARGERVAIYLDKRLETV--TAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLL  101 (515)
T ss_pred             eeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHHHH--HHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEE
Confidence            5788888777766555443 357788999998887654433  35788999999888775 4788999999999999998


Q ss_pred             eechHHHHHH
Q 039504          122 AVVPPLVLAL  131 (240)
Q Consensus       122 ~~~p~~~~~l  131 (240)
                      +..+.....+
T Consensus       102 i~~~~~~~~~  111 (515)
T TIGR03098       102 VTSSERLDLL  111 (515)
T ss_pred             EEccchhhhh
Confidence            8876554433

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=86.71  E-value=3.5  Score=35.30  Aligned_cols=88  Identities=18%  Similarity=0.131  Sum_probs=66.3

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+...+++.++|++..+++...  .+...+++++..|+..+..+ .....++...+++.+++.+
T Consensus        35 ~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i  112 (546)
T PRK08314         35 AISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSP--QFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVA  112 (546)
T ss_pred             eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCh--HHHHHHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEE
Confidence            47888888777666655443348899999998887543  34446789999999988875 4778899999999999998


Q ss_pred             eechHHHHHHH
Q 039504          122 AVVPPLVLALA  132 (240)
Q Consensus       122 ~~~p~~~~~l~  132 (240)
                      .........+.
T Consensus       113 i~~~~~~~~~~  123 (546)
T PRK08314        113 IVGSELAPKVA  123 (546)
T ss_pred             EEccchhhhHH
Confidence            88776655443

>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase

Probab=86.70  E-value=6.8  Score=29.20  Aligned_cols=92  Identities=20%  Similarity=0.227  Sum_probs=60.1

Q ss_pred             CCcEEEEecch-HHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceeeeechHH------HHHHHhCCCCCC
Q 039504           68 NGDVVLCVLPL-FHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVAAVVPPL------VLALAKNPMVAD  139 (240)
Q Consensus        68 ~~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~------~~~l~~~~~~~~  139 (240)
                      .+.+++.+.+- .|..|....-...-..|..++... +..++++.+.+.+.++.++..+..+      ++.+.+..+..+
T Consensus        88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~  167 (213)
T cd02069          88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRG  167 (213)
T ss_pred             CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHhcC
Confidence            34555555553 677787755556667888888886 5889999999999999987665432      222232222221


Q ss_pred             CCccchhhhhccCCCCCHHHHHHH
Q 039504          140 YDLSSIRVVLSGAAPLGKELEDAL  163 (240)
Q Consensus       140 ~~~~~lr~v~~~G~~~~~~~~~~~  163 (240)
                      .   .++ +++||.+++++..+..
T Consensus       168 ~---~~~-i~vGG~~~~~~~~~~~  187 (213)
T cd02069         168 I---KIP-LLIGGAATSRKHTAVK  187 (213)
T ss_pred             C---CCe-EEEEChhcCHHHHhhh
Confidence            1   223 6788889998877653

This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=86.58  E-value=6.5  Score=34.44  Aligned_cols=98  Identities=19%  Similarity=0.206  Sum_probs=69.4

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .|+.++.+.. +..+|  ..-.+|..++...+..+...+. ..++.++|++..++|..-..  ...+++++..|+..+..
T Consensus        66 ~p~~~A~~~~-~~~~~--~~~~~Ty~eL~~~v~~lA~~L~-~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~v~~  139 (629)
T PRK10524         66 RPEQLALIAV-STETD--EERTYTFRQLHDEVNRMAAMLR-SLGVQRGDRVLIYMPMIAEA--AFAMLACARIGAIHSVV  139 (629)
T ss_pred             CCCCeEEEEE-cCCCC--ceEEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHH--HHHHHHHHHhCcEEEee
Confidence            3556655442 21122  1345788888888777666554 45899999999998865432  23578889999888776


Q ss_pred             c-CCCHHHHHHHHHhccceeeeech
Q 039504          102 Q-KFEIGALLELIQRHRVSVAAVVP  125 (240)
Q Consensus       102 ~-~~~~~~~~~~i~~~~~t~l~~~p  125 (240)
                      . .+..+++...+++.++.++++..
T Consensus       140 ~~~~~~~~l~~~l~~~~~~~li~~~  164 (629)
T PRK10524        140 FGGFASHSLAARIDDAKPVLIVSAD  164 (629)
T ss_pred             CCCCCHHHHHHHHHhcCCcEEEEcc
Confidence            4 58889999999999999888754

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=86.47  E-value=5  Score=34.39  Aligned_cols=84  Identities=17%  Similarity=0.105  Sum_probs=62.1

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++......+...+. ..++.++|++..+++....+-  ..+++++..|+..+... ....+++...+++.++.++
T Consensus        55 ~~Ty~~l~~~~~~la~~L~-~~g~~~g~~V~i~~~~~~~~~--~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~  131 (546)
T PLN02330         55 AVTYGEVVRDTRRFAKALR-SLGLRKGQVVVVVLPNVAEYG--IVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLI  131 (546)
T ss_pred             cccHHHHHHHHHHHHHHHH-HhCCCCCCEEEEECCCchHHH--HHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEE
Confidence            5788888777766655444 347889999998887655433  35788999999888765 4677889999999999988


Q ss_pred             eechHHHH
Q 039504          122 AVVPPLVL  129 (240)
Q Consensus       122 ~~~p~~~~  129 (240)
                      ........
T Consensus       132 i~~~~~~~  139 (546)
T PLN02330        132 VTNDTNYG  139 (546)
T ss_pred             EEccchhh
Confidence            77655443

>PRK02261 methylaspartate mutase subunit S; Provisional

Probab=86.37  E-value=8.5  Score=26.41  Aligned_cols=94  Identities=17%  Similarity=0.136  Sum_probs=58.3

Q ss_pred             cEEEEecch-HHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceeeeech------HHHHHHHhCCCCCCCC
Q 039504           70 DVVLCVLPL-FHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVAAVVP------PLVLALAKNPMVADYD  141 (240)
Q Consensus        70 d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p------~~~~~l~~~~~~~~~~  141 (240)
                      .+++.+.+- .|..|........-..|..+++.. ...++++.+.+.++++.++..+.      ..++.+.+..+..  .
T Consensus         5 ~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~--~   82 (137)
T PRK02261          5 TVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEA--G   82 (137)
T ss_pred             EEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhc--C
Confidence            344444443 677787755566668899888886 47789999999999999876653      1233333333222  2


Q ss_pred             ccchhhhhccCCCC-----CHHHHHHHHHh
Q 039504          142 LSSIRVVLSGAAPL-----GKELEDALRSR  166 (240)
Q Consensus       142 ~~~lr~v~~~G~~~-----~~~~~~~~~~~  166 (240)
                      ++.+ .+++||...     +++..+.+++.
T Consensus        83 ~~~~-~i~vGG~~~~~~~~~~~~~~~l~~~  111 (137)
T PRK02261         83 LGDI-LLYVGGNLVVGKHDFEEVEKKFKEM  111 (137)
T ss_pred             CCCC-eEEEECCCCCCccChHHHHHHHHHc
Confidence            2333 366677542     34566667664

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=86.32  E-value=3.2  Score=36.37  Aligned_cols=98  Identities=20%  Similarity=0.168  Sum_probs=69.8

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .|+.++.+... ..+|.  .-.+|..++...+..+...+. ..++.++|++..++|..-.  +...+++++..|+..+..
T Consensus        65 ~p~~~Al~~~~-~~~~~--~~~~Ty~eL~~~v~~lA~~L~-~~Gv~~Gd~V~i~~~n~~e--~v~~~lA~~~~Gav~vpl  138 (628)
T TIGR02316        65 RGEQLALVTVS-SETGQ--ERTLTYRQLHREVNVFASALR-ALGVGRGDRVLIYMPMIAE--AVFAMLACARIGAIHSVV  138 (628)
T ss_pred             CCCCeEEEEEc-CCCCc--eEEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHH--HHHHHHHHHHhCCEEEec
Confidence            35556554422 12221  235788998888877666554 4589999999999986543  333578899999888776


Q ss_pred             c-CCCHHHHHHHHHhccceeeeech
Q 039504          102 Q-KFEIGALLELIQRHRVSVAAVVP  125 (240)
Q Consensus       102 ~-~~~~~~~~~~i~~~~~t~l~~~p  125 (240)
                      . .+..+++...+++.+++++++..
T Consensus       139 ~~~~~~~~l~~~l~~~~~~~li~~~  163 (628)
T TIGR02316       139 FGGFASHSLALRIDDATPKLIVSAD  163 (628)
T ss_pred             CCCCCHHHHHHHHHhcCceEEEECC
Confidence            4 58889999999999999888754

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK13388 acyl-CoA synthetase; Provisional

Probab=86.25  E-value=6.9  Score=33.57  Aligned_cols=85  Identities=13%  Similarity=-0.053  Sum_probs=62.9

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccc-cCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYL-TNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV  120 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  120 (240)
                      .+|...+......+...+. ..++ .++|++...++....  +...+++++..|+..+..+ ....+++...+++.+++.
T Consensus        26 ~lTy~el~~~~~~la~~L~-~~g~~~~~~~V~i~~~n~~~--~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~  102 (540)
T PRK13388         26 TWTWREVLAEAAARAAALI-ALADPDRPLHVGVLLGNTPE--MLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQL  102 (540)
T ss_pred             eeeHHHHHHHHHHHHHHHH-HhcCCCCCCEEEEECCCCcH--HHHHHHHHHhCCCEEEEecccCChHHHHHHHHhcCCCE
Confidence            6788888887776665443 3466 688998888875443  3335788999999888775 477889999999999998


Q ss_pred             eeechHHHHH
Q 039504          121 AAVVPPLVLA  130 (240)
Q Consensus       121 l~~~p~~~~~  130 (240)
                      ++........
T Consensus       103 ~i~~~~~~~~  112 (540)
T PRK13388        103 LVTDAEHRPL  112 (540)
T ss_pred             EEEChhhhHH
Confidence            8886655443

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=86.24  E-value=2.9  Score=35.03  Aligned_cols=107  Identities=18%  Similarity=0.120  Sum_probs=72.7

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      ..|-..+...+..++.++. .+|+.+||++..+.|.+..  |....+++...|..++... .+-.+++.=.+++.++.++
T Consensus        77 R~Tf~~~~~ev~slAaGll-~lGL~kGDrVgvwgpN~~~--w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l  153 (596)
T KOG1177|consen   77 RLTFSEFVSEVESLAAGLL-SLGLKKGDRVGVWGPNSYE--WVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKAL  153 (596)
T ss_pred             hhhHHHHHHHHHHHHhhHH-hhcCCCCCEEEEecCChHH--HHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEE
Confidence            3556667777777777665 6799999999998886543  3344567777777777654 4666777778899999999


Q ss_pred             eechHHH-----HHHHhCCC---------CCCCCccchhhhhccC
Q 039504          122 AVVPPLV-----LALAKNPM---------VADYDLSSIRVVLSGA  152 (240)
Q Consensus       122 ~~~p~~~-----~~l~~~~~---------~~~~~~~~lr~v~~~G  152 (240)
                      +..|.+.     +.+.+.+.         .+.+.++.++.++..+
T Consensus       154 ~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~  198 (596)
T KOG1177|consen  154 FAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILAD  198 (596)
T ss_pred             EccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecC
Confidence            9888653     22333111         1235667777777766

>PRK05857 acyl-CoA synthetase; Validated

Probab=86.09  E-value=5.4  Score=34.21  Aligned_cols=83  Identities=18%  Similarity=0.155  Sum_probs=62.9

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  120 (240)
                      ..+|..++...+..+...+. ..++.++|++..+++....+-  ..+++++..|+..+..+ ....+++.+.++..++..
T Consensus        40 ~~~Ty~el~~~~~~~a~~L~-~~g~~~g~~V~i~~~~~~e~~--~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~  116 (540)
T PRK05857         40 SALRYRELVAEVGGLAADLR-AQSVSRGSRVLVISDNGPETY--LSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAA  116 (540)
T ss_pred             ceeeHHHHHHHHHHHHHHHH-HhCcCCCCEEEEEcCCCHHHH--HHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCce
Confidence            35888998887776665544 357889999998887654433  35789999999998875 477888899999888888


Q ss_pred             eeechHH
Q 039504          121 AAVVPPL  127 (240)
Q Consensus       121 l~~~p~~  127 (240)
                      ++..+..
T Consensus       117 ii~~~~~  123 (540)
T PRK05857        117 ALVAPGS  123 (540)
T ss_pred             EEEeccc
Confidence            8776643

>PRK07798 acyl-CoA synthetase; Validated

Probab=85.97  E-value=8.3  Score=32.74  Aligned_cols=88  Identities=15%  Similarity=-0.003  Sum_probs=64.7

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  120 (240)
                      -.+|..++...+..+...+. ..++.++|++..+++...  .+...+++++..|+..+..+ ....+++...+++.++..
T Consensus        27 ~~~ty~el~~~~~~la~~L~-~~g~~~~~~v~v~~~n~~--~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~  103 (533)
T PRK07798         27 RRLTYAELEERANRLAHYLI-AQGLGPGDHVGIYARNRI--EYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVA  103 (533)
T ss_pred             ceeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCH--HHHHHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCE
Confidence            35788888777766665443 457889999888876443  33345788899999888775 477888999999999998


Q ss_pred             eeechHHHHHHH
Q 039504          121 AAVVPPLVLALA  132 (240)
Q Consensus       121 l~~~p~~~~~l~  132 (240)
                      ++........+.
T Consensus       104 ~~~~~~~~~~~~  115 (533)
T PRK07798        104 LVYEREFAPRVA  115 (533)
T ss_pred             EEEchhhHHHHH
Confidence            888776554443

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=85.52  E-value=5.9  Score=33.95  Aligned_cols=79  Identities=15%  Similarity=0.146  Sum_probs=60.3

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+. ..++.++|++..++|....  +...+++++..|+.++... ....+++...++..++.++
T Consensus        49 ~~Ty~~l~~~v~~la~~l~-~~G~~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l  125 (547)
T PRK06087         49 SYTYSALDHAASRLANWLL-AKGIEPGDRVAFQLPGWCE--FTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMF  125 (547)
T ss_pred             EEEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHH--HHHHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeEE
Confidence            4788888877766655444 4588999999988875543  3335789999999888775 4778889999999999887


Q ss_pred             eec
Q 039504          122 AVV  124 (240)
Q Consensus       122 ~~~  124 (240)
                      ++.
T Consensus       126 ~~~  128 (547)
T PRK06087        126 FAP  128 (547)
T ss_pred             EEe
Confidence            764

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=85.48  E-value=5.2  Score=34.32  Aligned_cols=88  Identities=16%  Similarity=0.080  Sum_probs=67.1

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|...+...+..+...+. ..++.+++++..+.+....+  ....++++..|+..+... ....+++...+++.+++.+
T Consensus        46 ~~Ty~el~~~v~~la~~L~-~~gi~~g~~V~v~~~n~~~~--~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l  122 (542)
T PRK06155         46 RWTYAEAARAAAAAAHALA-AAGVKRGDRVALMCGNRIEF--LDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLL  122 (542)
T ss_pred             cccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCChHH--HHHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEE
Confidence            5788888777766665443 45788999999888765443  335789999999888775 5788999999999999999


Q ss_pred             eechHHHHHHHh
Q 039504          122 AVVPPLVLALAK  133 (240)
Q Consensus       122 ~~~p~~~~~l~~  133 (240)
                      +........+.+
T Consensus       123 ~~~~~~~~~~~~  134 (542)
T PRK06155        123 VVEAALLAALEA  134 (542)
T ss_pred             EEChhhHHHHHH
Confidence            888776655433

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=85.48  E-value=4.5  Score=34.93  Aligned_cols=86  Identities=24%  Similarity=0.197  Sum_probs=65.3

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+. ..++.++|++..+.+....  +...+++++..|+..+... ....+.+...+++.+++.+
T Consensus        57 ~~Ty~ql~~~~~~~A~~L~-~~gi~~gd~V~l~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i  133 (573)
T PRK05605         57 TTTYAELGKQVRRAAAGLR-ALGVRPGDRVAIVLPNCPQ--HIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVA  133 (573)
T ss_pred             cccHHHHHHHHHHHHHHHH-HhCCCCCCEEEEECCCCHH--HHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEE
Confidence            4788888777766655443 4578899999988876543  3335788999999988775 5888999999999999999


Q ss_pred             eechHHHHHH
Q 039504          122 AVVPPLVLAL  131 (240)
Q Consensus       122 ~~~p~~~~~l  131 (240)
                      +........+
T Consensus       134 i~~~~~~~~~  143 (573)
T PRK05605        134 IVWDKVAPTV  143 (573)
T ss_pred             EechhhHHHH
Confidence            8877655544

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=85.44  E-value=11  Score=32.49  Aligned_cols=82  Identities=10%  Similarity=0.015  Sum_probs=62.4

Q ss_pred             eehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhccceeee
Q 039504           44 LTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSVAA  122 (240)
Q Consensus        44 ~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l~  122 (240)
                      +|...+...+..+...+.    -.++|++..++|....+  ...+++++..|+..+.... ...+++...+++.++++++
T Consensus        46 ~Ty~el~~~~~~lA~~L~----~~~gd~Val~~~n~~e~--~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii  119 (539)
T PRK06334         46 LSYNQVRKAVIALATKVS----KYPDQHIGIMMPASAGA--YIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVL  119 (539)
T ss_pred             ccHHHHHHHHHHHHHHHh----hccCCeEEEEcCCchHH--HHHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEE
Confidence            788888888777766443    25899999888865443  3357899999998888754 6778999999999999988


Q ss_pred             echHHHHHH
Q 039504          123 VVPPLVLAL  131 (240)
Q Consensus       123 ~~p~~~~~l  131 (240)
                      +....+..+
T Consensus       120 ~~~~~~~~~  128 (539)
T PRK06334        120 TSKQLMQHL  128 (539)
T ss_pred             ehHHHHHHH
Confidence            877665544

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=85.32  E-value=4  Score=35.08  Aligned_cols=85  Identities=21%  Similarity=0.138  Sum_probs=63.2

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|...+......+...+....++.++|++..+++....  +...+++++..|+..+... .+..+++...+++.+++.+
T Consensus        50 ~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~--~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~v  127 (560)
T PRK08751         50 TITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQ--YPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVL  127 (560)
T ss_pred             eeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHH--HHHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEE
Confidence            478888877776665543213578999999988875543  3335788999999998765 5788999999999999998


Q ss_pred             eechHHHH
Q 039504          122 AVVPPLVL  129 (240)
Q Consensus       122 ~~~p~~~~  129 (240)
                      +.......
T Consensus       128 i~~~~~~~  135 (560)
T PRK08751        128 VVIDNFGT  135 (560)
T ss_pred             EEcchhHH
Confidence            88765543

>PRK07514 malonyl-CoA synthase; Validated

Probab=85.22  E-value=5.6  Score=33.58  Aligned_cols=86  Identities=20%  Similarity=0.144  Sum_probs=64.3

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  120 (240)
                      ..+|...+...+..+...+. ..++.++|++...++...  .+...+++++..|+..+... .....++...+++.+++.
T Consensus        27 ~~~Ty~eL~~~~~~la~~L~-~~g~~~gd~v~i~~~~~~--e~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~  103 (504)
T PRK07514         27 LRYTYGDLDAASARLANLLV-ALGVKPGDRVAVQVEKSP--EALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPAL  103 (504)
T ss_pred             CEEcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCH--HHHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcE
Confidence            36788888777666555443 457899999998887553  33345788999998888775 478889999999999999


Q ss_pred             eeechHHHHH
Q 039504          121 AAVVPPLVLA  130 (240)
Q Consensus       121 l~~~p~~~~~  130 (240)
                      +...+.....
T Consensus       104 ii~~~~~~~~  113 (504)
T PRK07514        104 VVCDPANFAW  113 (504)
T ss_pred             EEEccchhHH
Confidence            8887765543

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=85.15  E-value=9.3  Score=33.05  Aligned_cols=88  Identities=16%  Similarity=0.075  Sum_probs=66.0

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  120 (240)
                      -.+|..++...+..+...+....+++++|++...++.....  ...+++++..|+..+... ....+.+...++..+++.
T Consensus        37 ~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~--~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~  114 (576)
T PRK05620         37 EQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEH--LEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEV  114 (576)
T ss_pred             EEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHH--HHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcE
Confidence            46788888887777666553235788999999888754432  235788888998888775 477899999999999999


Q ss_pred             eeechHHHHHH
Q 039504          121 AAVVPPLVLAL  131 (240)
Q Consensus       121 l~~~p~~~~~l  131 (240)
                      +++.+.....+
T Consensus       115 ~i~~~~~~~~~  125 (576)
T PRK05620        115 IVADPRLAEQL  125 (576)
T ss_pred             EEEChhhHHHH
Confidence            98877665543

>PRK13383 acyl-CoA synthetase; Provisional

Probab=85.10  E-value=5.7  Score=33.78  Aligned_cols=87  Identities=15%  Similarity=0.127  Sum_probs=65.1

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+. ..++.++|++...++..-  .+...+++++..|+..+..++ ...+.+...+++.+++.+
T Consensus        60 ~lTy~el~~~~~~la~~L~-~~gi~~g~~V~i~~~~~~--~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i  136 (516)
T PRK13383         60 ALSYRELQRATESLARRLT-RDGVAPGRAVGVMCRNGR--GFVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTV  136 (516)
T ss_pred             cEeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEECCCCH--HHHHHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEE
Confidence            4788888777766665444 347899999998886443  333357789999999988764 788999999999999999


Q ss_pred             eechHHHHHHH
Q 039504          122 AVVPPLVLALA  132 (240)
Q Consensus       122 ~~~p~~~~~l~  132 (240)
                      ...+.....+.
T Consensus       137 i~~~~~~~~~~  147 (516)
T PRK13383        137 VADNEFAERIA  147 (516)
T ss_pred             EEchhHHHHHH
Confidence            98776655543

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=85.04  E-value=3.2  Score=35.85  Aligned_cols=86  Identities=23%  Similarity=0.202  Sum_probs=65.5

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  120 (240)
                      ..+|..++...+..+...+. ..++.++|++...++....  +...+++++..|+..+... .+.++++...+++.+++.
T Consensus        72 ~~~Ty~el~~~v~~~A~~L~-~~gv~~gd~V~i~~~n~~~--~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~  148 (570)
T PRK04319         72 EKYTYKELKELSNKFANVLK-ELGVEKGDRVFIFMPRIPE--LYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKV  148 (570)
T ss_pred             eeecHHHHHHHHHHHHHHHH-HhCCCCCCEEEEECCCCHH--HHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcE
Confidence            35788888877766655443 4578999999988875543  3335789999999888764 578899999999999999


Q ss_pred             eeechHHHHH
Q 039504          121 AAVVPPLVLA  130 (240)
Q Consensus       121 l~~~p~~~~~  130 (240)
                      ++..+..+..
T Consensus       149 ii~~~~~~~~  158 (570)
T PRK04319        149 LITTPALLER  158 (570)
T ss_pred             EEEChhhhhc
Confidence            8887776543

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=85.02  E-value=8.8  Score=33.40  Aligned_cols=86  Identities=17%  Similarity=0.063  Sum_probs=63.4

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+. ..++.++|++..+++....  +...+++++..|+..+..+ ....+.+...+++.+++++
T Consensus        62 ~~Ty~eL~~~~~~la~~L~-~~g~~~gd~V~i~~~n~~~--~v~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l  138 (600)
T PRK08279         62 SISYAELNARANRYAHWAA-ARGVGKGDVVALLMENRPE--YLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHL  138 (600)
T ss_pred             cccHHHHHHHHHHHHHHHH-hcCCCCCCEEEEECCCCHH--HHHHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEE
Confidence            4788888777766555433 3578899999988875543  3346789999998888775 4677888999999999998


Q ss_pred             eechHHHHHH
Q 039504          122 AVVPPLVLAL  131 (240)
Q Consensus       122 ~~~p~~~~~l  131 (240)
                      +........+
T Consensus       139 i~~~~~~~~~  148 (600)
T PRK08279        139 IVGEELVEAF  148 (600)
T ss_pred             EEChHHHHHH
Confidence            8876554433

>PRK05850 acyl-CoA synthetase; Validated

Probab=84.78  E-value=11  Score=32.48  Aligned_cols=86  Identities=15%  Similarity=0.102  Sum_probs=63.9

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC----CCHHHHHHHHHhcc
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK----FEIGALLELIQRHR  117 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~  117 (240)
                      ..+|...+...+..+...+. ..+ .++|++..+++...  .+...+++++..|+..+..+.    ...+++...+++.+
T Consensus        34 ~~lty~eL~~~v~~~A~~L~-~~g-~~gd~V~l~~~n~~--~~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~  109 (578)
T PRK05850         34 ETLTWSQLYRRTLNVAEELR-RHG-STGDRAVILAPQGL--EYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTS  109 (578)
T ss_pred             eeecHHHHHHHHHHHHHHHH-HhC-CCCCEEEEEcCCcc--cHHHHHHHHHHcCceEEecCCCCccchHHHHHHHHHhcC
Confidence            46888888877766655444 234 57899988888554  344468899999999988863    35678999999999


Q ss_pred             ceeeeechHHHHHH
Q 039504          118 VSVAAVVPPLVLAL  131 (240)
Q Consensus       118 ~t~l~~~p~~~~~l  131 (240)
                      +.+++..+.....+
T Consensus       110 ~~~il~~~~~~~~~  123 (578)
T PRK05850        110 PSVVLTTSAVVDDV  123 (578)
T ss_pred             CCEEEEcHHHHHHH
Confidence            99999887766554

>PRK09088 acyl-CoA synthetase; Validated

Probab=84.66  E-value=8.6  Score=32.35  Aligned_cols=80  Identities=14%  Similarity=0.027  Sum_probs=60.2

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+. ..++.++|++..+++....  +...+++++..|+..+... ....+.+...+++.+++.+
T Consensus        22 ~~ty~~l~~~v~~~a~~l~-~~g~~~~~~v~i~~~~~~~--~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~i   98 (488)
T PRK09088         22 RWTYAELDALVGRLAAVLR-RRGCVDGERLAVLARNSVW--LVALHFACARVGAIYVPLNWRLSASELDALLQDAEPRLL   98 (488)
T ss_pred             EEEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHH--HHHHHHHHHHcCeEEEeeCccCCHHHHHHHHHhCCCCEE
Confidence            5788888777766555443 4578899999888875544  3335788999998888775 4788899999999999988


Q ss_pred             eech
Q 039504          122 AVVP  125 (240)
Q Consensus       122 ~~~p  125 (240)
                      +...
T Consensus        99 i~~~  102 (488)
T PRK09088         99 LGDD  102 (488)
T ss_pred             EEcc
Confidence            7654

>PRK13391 acyl-CoA synthetase; Provisional

Probab=84.27  E-value=11  Score=31.98  Aligned_cols=98  Identities=16%  Similarity=0.107  Sum_probs=69.8

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .|+.++.+...++       ..+|..++...+..+...+. ..++.+++++..+.+....  +...+++++..|...+..
T Consensus        10 ~p~~~a~~~~~~~-------~~~ty~~l~~~~~~la~~L~-~~g~~~~~~V~v~~~~~~~--~~~~~~a~~~~G~~~~~l   79 (511)
T PRK13391         10 TPDKPAVIMASTG-------EVVTYRELDERSNRLAHLFR-SLGLKRGDHVAIFMENNLR--YLEVCWAAERSGLYYTCV   79 (511)
T ss_pred             CCCceEEEecCCC-------CEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHH--HHHHHHHHHHhccEEecc
Confidence            3556666554443       24788888777766655444 3478889999888775543  333577899999888877


Q ss_pred             c-CCCHHHHHHHHHhccceeeeechHHHH
Q 039504          102 Q-KFEIGALLELIQRHRVSVAAVVPPLVL  129 (240)
Q Consensus       102 ~-~~~~~~~~~~i~~~~~t~l~~~p~~~~  129 (240)
                      + ......+...+++.++..+.+.+....
T Consensus        80 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~  108 (511)
T PRK13391         80 NSHLTPAEAAYIVDDSGARALITSAAKLD  108 (511)
T ss_pred             ccccCHHHHHHHHhccCCcEEEEchhhHH
Confidence            5 477889999999999998888775544

>PRK08315 AMP-binding domain protein; Validated

Probab=84.20  E-value=7.4  Score=33.41  Aligned_cols=81  Identities=14%  Similarity=0.099  Sum_probs=61.1

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|+.++......+...+. ..++.++|++..+.+....  +...+++++..|+..+..++ ....++...+++.+++.+
T Consensus        43 ~~Ty~~l~~~~~~~a~~L~-~~gi~~g~~V~i~~~~~~~--~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i  119 (559)
T PRK08315         43 RWTYREFNEEVDALAKGLL-ALGIEKGDRVGIWAPNVPE--WVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKAL  119 (559)
T ss_pred             EEcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCChH--HHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEE
Confidence            4788888777666555433 3578999999888775543  33467899999999988754 778889999999999988


Q ss_pred             eechH
Q 039504          122 AVVPP  126 (240)
Q Consensus       122 ~~~p~  126 (240)
                      +....
T Consensus       120 i~~~~  124 (559)
T PRK08315        120 IAADG  124 (559)
T ss_pred             EEecc
Confidence            77653

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=83.27  E-value=6.3  Score=33.87  Aligned_cols=85  Identities=16%  Similarity=0.124  Sum_probs=64.1

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  120 (240)
                      ..+|..++......+...+. ..++.++|++..+++.....-  ..+++++..|+..+... ....+++...+++.+++.
T Consensus        47 ~~lTy~~l~~~~~~~a~~L~-~~gi~~gd~V~i~~~n~~~~~--~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~  123 (557)
T PRK07059         47 KAITYGELDELSRALAAWLQ-SRGLAKGARVAIMMPNVLQYP--VAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEA  123 (557)
T ss_pred             ceeeHHHHHHHHHHHHHHHH-HhCCCCCCEEEEECCCCHHHH--HHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceE
Confidence            35788998887766665444 347899999998887554332  35689999999998775 467889999999999999


Q ss_pred             eeechHHHH
Q 039504          121 AAVVPPLVL  129 (240)
Q Consensus       121 l~~~p~~~~  129 (240)
                      ++....+..
T Consensus       124 vi~~~~~~~  132 (557)
T PRK07059        124 IVVLENFAT  132 (557)
T ss_pred             EEEchhhHH
Confidence            888765543

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=83.10  E-value=4.9  Score=34.67  Aligned_cols=81  Identities=21%  Similarity=0.151  Sum_probs=62.0

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+. ..++.++|++...++....+-  ..+++++..|+..+... ....+++...+++.+++.+
T Consensus        32 ~~Ty~el~~~~~~la~~L~-~~Gv~~gd~V~v~~~n~~~~~--~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i  108 (563)
T PLN02860         32 RRTGHEFVDGVLSLAAGLL-RLGLRNGDVVAIAALNSDLYL--EWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVML  108 (563)
T ss_pred             eeeHHHHHHHHHHHHHHHH-HhCCCCCCEEEEEcCCCHHHH--HHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCceEE
Confidence            4788888887766665444 458899999998887654333  35788899999888875 4788999999999999988


Q ss_pred             eechH
Q 039504          122 AVVPP  126 (240)
Q Consensus       122 ~~~p~  126 (240)
                      +....
T Consensus       109 ~~~~~  113 (563)
T PLN02860        109 VTDET  113 (563)
T ss_pred             EEecc
Confidence            87653

>PRK08162 acyl-CoA synthetase; Validated

Probab=82.98  E-value=6.2  Score=33.79  Aligned_cols=86  Identities=13%  Similarity=0.110  Sum_probs=65.7

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+. ..++.++|++....+....  +...+++++..|+..+... ....+++...+++.+++.+
T Consensus        43 ~~ty~~L~~~~~~~a~~L~-~~g~~~g~~v~i~~~~~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i  119 (545)
T PRK08162         43 RRTWAETYARCRRLASALA-RRGIGRGDTVAVLLPNIPA--MVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVL  119 (545)
T ss_pred             EEEHHHHHHHHHHHHHHHH-HhCCCCCCEEEEECCCchH--HHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEE
Confidence            5889998887776665444 3578899999988876543  3345788999998888775 4788999999999999999


Q ss_pred             eechHHHHHH
Q 039504          122 AVVPPLVLAL  131 (240)
Q Consensus       122 ~~~p~~~~~l  131 (240)
                      +..+.....+
T Consensus       120 ~~~~~~~~~~  129 (545)
T PRK08162        120 IVDTEFAEVA  129 (545)
T ss_pred             EEccchhhHH
Confidence            8877665443

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=82.39  E-value=6.7  Score=33.05  Aligned_cols=58  Identities=26%  Similarity=0.291  Sum_probs=43.0

Q ss_pred             ccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc----CCCHHHHHHHHHhccceeeeechHHH
Q 039504           66 LTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ----KFEIGALLELIQRHRVSVAAVVPPLV  128 (240)
Q Consensus        66 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~----~~~~~~~~~~i~~~~~t~l~~~p~~~  128 (240)
                      ..+||+++.--|.++.     ..-..-..|..++..+    +.+++.+-+.++++++..++.+|++-
T Consensus       176 ~~pGd~v~vE~PtY~~-----~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~q  237 (459)
T COG1167         176 LDPGDTVLVEDPTYPG-----ALQALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQ  237 (459)
T ss_pred             CCCCCEEEEcCCCcHH-----HHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCC
Confidence            3689999887775543     2234445677777653    48899999999999999999999763

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=82.19  E-value=9.9  Score=32.11  Aligned_cols=86  Identities=20%  Similarity=0.179  Sum_probs=62.8

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+. ..++.++|++....+.....  ...+++++..|+..+..+ .+....+...+++.+++.+
T Consensus        11 ~~ty~el~~~v~~~a~~L~-~~g~~~~~~V~i~~~~~~~~--~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~i   87 (502)
T PRK08276         11 VVTYGELEARSNRLAHGLR-ALGLREGDVVAILLENNPEF--FEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVL   87 (502)
T ss_pred             EEEHHHHHHHHHHHHHHHH-HhCCCCCCEEEEEeCCCHHH--HHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEE
Confidence            4777777776666555443 35788999999888755432  235788999998888775 4777888999999999988


Q ss_pred             eechHHHHHH
Q 039504          122 AVVPPLVLAL  131 (240)
Q Consensus       122 ~~~p~~~~~l  131 (240)
                      +........+
T Consensus        88 i~~~~~~~~~   97 (502)
T PRK08276         88 IVSAALADTA   97 (502)
T ss_pred             EEccchhhHH
Confidence            8877655443

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=82.14  E-value=6.6  Score=33.84  Aligned_cols=84  Identities=15%  Similarity=0.111  Sum_probs=62.4

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  120 (240)
                      ..+|..++......+...+....++.++|++..+++....  +...+++++..|+..+... ....+++...+++.++..
T Consensus        48 ~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e--~~~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~  125 (562)
T PRK12492         48 VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQ--YPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARA  125 (562)
T ss_pred             ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHH--HHHHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceE
Confidence            3578888877776666544322378899999988875443  3346789999998888775 477899999999999998


Q ss_pred             eeechHH
Q 039504          121 AAVVPPL  127 (240)
Q Consensus       121 l~~~p~~  127 (240)
                      +...+.+
T Consensus       126 ~i~~~~~  132 (562)
T PRK12492        126 LVYLNMF  132 (562)
T ss_pred             EEecccc
Confidence            8875543

>PRK12583 acyl-CoA synthetase; Provisional

Probab=81.89  E-value=12  Score=32.14  Aligned_cols=81  Identities=17%  Similarity=0.110  Sum_probs=61.3

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|...+...+..+...+. ..++.++|++..+.+....  +....++++..|+..+... .....++...+++.+++.+
T Consensus        45 ~~Ty~~l~~~~~~~a~~L~-~~gi~~g~~V~i~~~~~~~--~~~~~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i  121 (558)
T PRK12583         45 RYTWRQLADAVDRLARGLL-ALGVQPGDRVGIWAPNCAE--WLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWV  121 (558)
T ss_pred             EecHHHHHHHHHHHHHHHH-HhCCCCCCEEEEECCCChH--HHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEE
Confidence            4788888777766555433 3478899999888875443  3335788999999988765 4788999999999999988


Q ss_pred             eechH
Q 039504          122 AVVPP  126 (240)
Q Consensus       122 ~~~p~  126 (240)
                      ++.+.
T Consensus       122 i~~~~  126 (558)
T PRK12583        122 ICADA  126 (558)
T ss_pred             EEecc
Confidence            87653

>PRK13390 acyl-CoA synthetase; Provisional

Probab=81.83  E-value=18  Score=30.59  Aligned_cols=94  Identities=18%  Similarity=0.149  Sum_probs=66.4

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .|+.++.+....|       ..+|..++...+..+...+. ..++.++|++..+.+....  +...+++++..|+..+..
T Consensus        10 ~p~~~a~~~~~~~-------~~lTy~el~~~~~~la~~L~-~~gv~~gd~V~i~~~n~~~--~~~~~la~~~~Ga~~~~l   79 (501)
T PRK13390         10 APDRPAVIVAETG-------EQVSYRQLDDDSAALARVLY-DAGLRTGDVVALLSDNSPE--ALVVLWAALRSGLYITAI   79 (501)
T ss_pred             CCCCcEEEecCCC-------eEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEecc
Confidence            3566665542222       35888998887777665544 4578999999988875543  333578899999888876


Q ss_pred             c-CCCHHHHHHHHHhccceeeeech
Q 039504          102 Q-KFEIGALLELIQRHRVSVAAVVP  125 (240)
Q Consensus       102 ~-~~~~~~~~~~i~~~~~t~l~~~p  125 (240)
                      . ...+.++..++++.++..+....
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~i~~~  104 (501)
T PRK13390         80 NHHLTAPEADYIVGDSGARVLVASA  104 (501)
T ss_pred             ccCCCHHHHHHHHHhcCCcEEEEcc
Confidence            5 47788888888888888776644

>PRK07867 acyl-CoA synthetase; Validated

Probab=81.76  E-value=8.5  Score=32.96  Aligned_cols=85  Identities=13%  Similarity=-0.007  Sum_probs=63.1

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|...+...+..+...+....+..+++++..+++...  .+...+++++..|..++... ...++++...+++.+++.+
T Consensus        28 ~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l  105 (529)
T PRK07867         28 FTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTP--EFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLV  105 (529)
T ss_pred             EEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCH--HHHHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEE
Confidence            47888888887776665442235677888887777443  33345789999999998775 4778899999999999999


Q ss_pred             eechHHHH
Q 039504          122 AVVPPLVL  129 (240)
Q Consensus       122 ~~~p~~~~  129 (240)
                      +.......
T Consensus       106 i~~~~~~~  113 (529)
T PRK07867        106 LTESAHAE  113 (529)
T ss_pred             EECHhHHH
Confidence            88876554

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=81.53  E-value=9.8  Score=33.72  Aligned_cols=87  Identities=11%  Similarity=-0.061  Sum_probs=65.4

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+. ..++.++|++..+++...-  +....++++..|+..+... ...++++...++..+++++
T Consensus        76 ~~Ty~el~~~v~~lA~~L~-~~Gv~~gd~V~i~~~n~~e--w~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v  152 (660)
T PLN02430         76 WKTYKEVYEEVLQIGSALR-ASGAEPGSRVGIYGSNCPQ--WIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFV  152 (660)
T ss_pred             EEEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEE
Confidence            3688888887766665443 4588999999988875443  4445788999998888765 4788999999999999999


Q ss_pred             eechHHHHHHH
Q 039504          122 AVVPPLVLALA  132 (240)
Q Consensus       122 ~~~p~~~~~l~  132 (240)
                      ++....+..+.
T Consensus       153 ~~~~~~~~~~~  163 (660)
T PLN02430        153 FVQDKKIKELL  163 (660)
T ss_pred             EECHHHHHHHH
Confidence            98776544433

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=81.06  E-value=16  Score=31.48  Aligned_cols=81  Identities=21%  Similarity=0.204  Sum_probs=62.9

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|...+...+..+...+. ..++.++|++..+++...-+-  ..+++++..|+..+...+ ..+.++...++..++..+
T Consensus        38 ~~Ty~el~~~~~~~A~~L~-~~~v~~gdrVail~~N~~e~~--~~~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~  114 (534)
T COG0318          38 RLTYRELDRRANRLAAALQ-ALGVKPGDRVAILLPNSPEFL--IAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVL  114 (534)
T ss_pred             eeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHHH--HHHHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEE
Confidence            6888898888777665444 234789999998888654433  357899999999988864 678889999999999988


Q ss_pred             eechH
Q 039504          122 AVVPP  126 (240)
Q Consensus       122 ~~~p~  126 (240)
                      +....
T Consensus       115 ~~~~~  119 (534)
T COG0318         115 ITSAE  119 (534)
T ss_pred             EEccc
Confidence            88776

>PRK06178 acyl-CoA synthetase; Validated

Probab=80.66  E-value=9.2  Score=32.97  Aligned_cols=87  Identities=18%  Similarity=0.104  Sum_probs=64.8

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+. ..++.+++++...++....  +...+++++..|+..+... ......+...+++.++..+
T Consensus        58 ~~Ty~~l~~~~~~la~~L~-~~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~i  134 (567)
T PRK06178         58 VITYAELDELSDRFAALLR-QRGVGAGDRVAVFLPNCPQ--FHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVL  134 (567)
T ss_pred             eeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCcH--HHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEE
Confidence            5788888777666554443 3478899999888876543  3335788899998888765 4778899999999999999


Q ss_pred             eechHHHHHHH
Q 039504          122 AVVPPLVLALA  132 (240)
Q Consensus       122 ~~~p~~~~~l~  132 (240)
                      .........+.
T Consensus       135 i~~~~~~~~l~  145 (567)
T PRK06178        135 LALDQLAPVVE  145 (567)
T ss_pred             EEccchHHHHH
Confidence            98887665443

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=80.62  E-value=23  Score=29.73  Aligned_cols=83  Identities=17%  Similarity=0.092  Sum_probs=62.1

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|...+...+..+...+. ..++.++|++...++-...  +...+++++..|+..+..+. ....++...+++.++..+
T Consensus        27 ~~Ty~el~~~~~~~a~~L~-~~g~~~~~~v~i~~~~~~~--~~~~~la~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~v  103 (483)
T PRK03640         27 KVTFMELHEAVVSVAGKLA-ALGVKKGDRVALLMKNGME--MILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCL  103 (483)
T ss_pred             eeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHH--HHHHHHHHHhCCcEEEecCcCCCHHHHHHHHHhCCCCEE
Confidence            5788888777766554433 3568899999988876544  33467899999999988864 788889999999998887


Q ss_pred             eechHHH
Q 039504          122 AVVPPLV  128 (240)
Q Consensus       122 ~~~p~~~  128 (240)
                      .......
T Consensus       104 i~~~~~~  110 (483)
T PRK03640        104 ITDDDFE  110 (483)
T ss_pred             EEcchhh
Confidence            7655443

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=80.38  E-value=9.4  Score=32.36  Aligned_cols=87  Identities=17%  Similarity=0.189  Sum_probs=63.9

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+. ..++.++|++..+.|....  +....++++..|+..+... .....++..++++.+++.+
T Consensus        11 ~~Ty~el~~~~~~la~~l~-~~g~~~g~~V~v~~~~~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i   87 (509)
T PRK12406         11 RRSFDELAQRAARAAGGLA-ALGVRPGDCVALLMRNDFA--FFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVL   87 (509)
T ss_pred             eecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEE
Confidence            4677777666655554433 4578899999988875543  3345788899999888875 4778899999999999999


Q ss_pred             eechHHHHHHH
Q 039504          122 AVVPPLVLALA  132 (240)
Q Consensus       122 ~~~p~~~~~l~  132 (240)
                      +........+.
T Consensus        88 ~~~~~~~~~~~   98 (509)
T PRK12406         88 IAHADLLHGLA   98 (509)
T ss_pred             EEccchhhhhh
Confidence            88776665443

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=80.19  E-value=11  Score=36.58  Aligned_cols=100  Identities=16%  Similarity=0.069  Sum_probs=66.7

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .|+.++.+...+..........+|..++...+..+...+. ..++.+++++..+++-...  +...+++++..|+..+..
T Consensus       249 ~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~-~~gv~~g~~V~i~~~~~~~--~i~~~lA~l~~G~~~vpl  325 (1389)
T TIGR03443       249 HPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLL-KTGIKRGDVVMIYAYRGVD--LVVAVMGVLKAGATFSVI  325 (1389)
T ss_pred             CCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHH-HhCCCCCCEEEEEecCCHH--HHHHHHHHHhhCcEEecc
Confidence            3566666543221101112345888888887766665443 3578899999988875543  333678999999998887


Q ss_pred             cC-CCHHHHHHHHHhccceeeeec
Q 039504          102 QK-FEIGALLELIQRHRVSVAAVV  124 (240)
Q Consensus       102 ~~-~~~~~~~~~i~~~~~t~l~~~  124 (240)
                      ++ ..++++...+++.++..++..
T Consensus       326 dp~~p~~~~~~~l~~~~~~~li~~  349 (1389)
T TIGR03443       326 DPAYPPARQTIYLSVAKPRALIVI  349 (1389)
T ss_pred             CCCCcHHHHHHHHHhcCCCEEEEe
Confidence            65 667788888888888877654

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=80.18  E-value=7.4  Score=33.37  Aligned_cols=85  Identities=12%  Similarity=-0.049  Sum_probs=62.8

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  120 (240)
                      ..+|..++...+..+...+. ..++.++|++..+++.....-  ..+++++..|+..+... ....+.+..++++.++..
T Consensus        38 ~~~Ty~el~~~v~~la~~L~-~~g~~~gd~v~i~~~~~~~~~--~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~  114 (542)
T PRK06018         38 VRTTYAQIHDRALKVSQALD-RDGIKLGDRVATIAWNTWRHL--EAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRV  114 (542)
T ss_pred             eEEEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCchHHH--HHHHHHHhcCeEeeccccccCHHHHHHHHhccCCCE
Confidence            35788888877766665444 457899999998877554333  35678888998888775 477889999999999998


Q ss_pred             eeechHHHH
Q 039504          121 AAVVPPLVL  129 (240)
Q Consensus       121 l~~~p~~~~  129 (240)
                      +++......
T Consensus       115 i~~~~~~~~  123 (542)
T PRK06018        115 VITDLTFVP  123 (542)
T ss_pred             EEEccccHH
Confidence            887654433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		1e-95
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		5e-91
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		6e-26
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		3e-25
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		3e-25
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		3e-25
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		1e-24
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-24
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-24
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-24
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		1e-15
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		5e-14
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		5e-14
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		6e-14
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		6e-13
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		8e-13
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		4e-12
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		3e-11
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		2e-10
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		2e-09
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		3e-09
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		1e-08
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		5e-07
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		2e-06
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		3e-06
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		3e-06
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		3e-06
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		4e-06
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		5e-06
3fcc_A	512	Crystal Structure Of Dlta Protein In Complex With A		9e-06
3dhv_A	512	Crystal Structure Of Dlta Protein In Complex With D		1e-05
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		1e-05
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		1e-05
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		5e-05
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		1e-04
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		2e-04
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		3e-04
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		5e-04

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score =  345 bits (886), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 161/239 (67%), Positives = 198/239 (82%)
Query: 2   CLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGEN 61
           CLHF+ L++ADE++ P+V I PDD VALP+SSGTTGLPKGV+LTHK LITSVAQQVDG+N
Sbjct: 156 CLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN 215
Query: 62  PNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXX 121
           PNLY  + DV+LCVLP+FHIY+LNS++LC LR GA +L+M KFEIG+LL LI++++VS  
Sbjct: 216 PNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIA 275
Query: 122 XXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181
                      K+P +  +DLSS+R++ SG APLGKELED +R++ PQA LGQGYGMTEA
Sbjct: 276 PVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEA 335
Query: 182 GPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           GPVL+MCL FAK+PF  K G+CGTVVRNAE+K++DPETGASLP NQPGEICIRG QIMK
Sbjct: 336 GPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMK 394

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score =  330 bits (845), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 161/242 (66%), Positives = 189/242 (78%), Gaps = 3/242 (1%)
Query: 2   CLHFTVLSEADEDQ---IPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVD 58
           CL FT L+++  +    I  V I PDD VALP+SSGTTGLPKGV+LTHK L+TSVAQQVD
Sbjct: 200 CLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVD 259
Query: 59  GENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRV 118
           GENPNLY  + DV+LCVLP+FHIY+LNS++LC LR GA +L+M KFEI  LLELIQR +V
Sbjct: 260 GENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKV 319
Query: 119 SXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM 178
           +             K+     YDLSSIRVV SGAAPLGKELEDA+ ++ P A LGQGYGM
Sbjct: 320 TVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGM 379
Query: 179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQI 238
           TEAGPVL+M LGFAK+PFP KSG+CGTVVRNAE+K++DP+TG SL  NQPGEICIRG QI
Sbjct: 380 TEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQI 439
Query: 239 MK 240
           MK
Sbjct: 440 MK 441

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score =  114 bits (284), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 116/229 (50%), Gaps = 6/229 (2%)
Query: 12  DEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDV 71
           + D IP+          +  SSG+TGLPKGV LTHK++    +   D    N  + +   
Sbjct: 212 EYDYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPD-TA 270
Query: 72  VLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXX 131
           +L V+P  H + + + L   L  G  ++LM +FE    L  +Q +++             
Sbjct: 271 ILTVIPFHHGFGMFTTL-GYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFF 329
Query: 132 XKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGF 191
            K+ +V  YDLS++  + SG APL KE+ +A+  R     + QGYG+TE    + +    
Sbjct: 330 AKSTLVDKYDLSNLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIII---- 385
Query: 192 AKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
             +    K G+CG VV     K++D +TG +L  NQ GE+C++GP IMK
Sbjct: 386 TPRGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMK 434

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 119/232 (51%), Gaps = 15/232 (6%)
Query: 12  DEDQIPEVAIEPDDPVALPF-SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGD 70
           + D +PE + + D  +AL   SSG+TGLPKGV L H++     +   D    N  + +  
Sbjct: 178 EYDFVPE-SFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPD-T 235
Query: 71  VVLCVLPLFH---IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXX 127
            +L V+P  H   +++    L+C  R    V+LM +FE    L  +Q +++         
Sbjct: 236 AILSVVPFHHGFGMFTTLGYLICGFR----VVLMYRFEEELFLRSLQDYKIQSALLVPTL 291
Query: 128 XXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSM 187
                K+ ++  YDLS++  + SG APL KE+ +A+  R     + QGYG+TE    + +
Sbjct: 292 FSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI 351
Query: 188 CLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
                 +P     G+ G VV   E KV+D +TG +L  NQ GE+C+RGP IM
Sbjct: 352 TPEGDDKP-----GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIM 398

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 119/232 (51%), Gaps = 15/232 (6%)
Query: 12  DEDQIPEVAIEPDDPVALPF-SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGD 70
           + D +PE + + D  +AL   SSG+TGLPKGV L H++     +   D    N  + +  
Sbjct: 178 EYDFVPE-SFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPD-T 235
Query: 71  VVLCVLPLFH---IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXX 127
            +L V+P  H   +++    L+C  R    V+LM +FE    L  +Q +++         
Sbjct: 236 AILSVVPFHHGFGMFTTLGYLICGFR----VVLMYRFEEELFLRSLQDYKIQSALLVPTL 291
Query: 128 XXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSM 187
                K+ ++  YDLS++  + SG APL KE+ +A+  R     + QGYG+TE    + +
Sbjct: 292 FSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI 351
Query: 188 CLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
                 +P     G+ G VV   E KV+D +TG +L  NQ GE+C+RGP IM
Sbjct: 352 TPEGDDKP-----GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIM 398

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 119/232 (51%), Gaps = 15/232 (6%)
Query: 12  DEDQIPEVAIEPDDPVALPF-SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGD 70
           + D +PE + + D  +AL   SSG+TGLPKGV L H++     +   D    N  + +  
Sbjct: 183 EYDFVPE-SFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPD-T 240
Query: 71  VVLCVLPLFH---IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXX 127
            +L V+P  H   +++    L+C  R    V+LM +FE    L  +Q +++         
Sbjct: 241 AILSVVPFHHGFGMFTTLGYLICGFR----VVLMYRFEEELFLRSLQDYKIQSALLVPTL 296
Query: 128 XXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSM 187
                K+ ++  YDLS++  + SG APL KE+ +A+  R     + QGYG+TE    + +
Sbjct: 297 FSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI 356
Query: 188 CLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
                 +P     G+ G VV   E KV+D +TG +L  NQ GE+C+RGP IM
Sbjct: 357 TPEGDDKP-----GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIM 403

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 117/227 (51%), Gaps = 9/227 (3%)
Query: 14  DQIPEVAIEPDDPVALPF-SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVV 72
           D +PE + + D  +AL   SSG+TGLPKGV L H++L    +   D    N  +     +
Sbjct: 185 DFVPE-SFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHARDPIFGN-QIAPDTAI 242
Query: 73  LCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXX 132
           L V+P  H + + + L   L +G  V+LM +FE    L  +Q +++              
Sbjct: 243 LSVVPFHHGFGMFTTL-GYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFLA 301
Query: 133 KNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFA 192
           K+ ++  YDLS++  + SG APL KE+ +A+  R     + QGYG+TE    + +     
Sbjct: 302 KSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPKGD 361
Query: 193 KQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
            +P     G+ G VV   E KV+D +TG +L  NQ GE+ +RGP IM
Sbjct: 362 DKP-----GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPMIM 403

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 14/226 (6%)
Query: 19  VAIEPDDPVALPF-SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLP 77
           V ++  + VAL   SSG+TGLPKGV LTH++++T  +   D    N  ++ G  VL V+P
Sbjct: 186 VEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGN-QVSPGTAVLTVVP 244
Query: 78  LFH---IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKN 134
             H   +++    L+C  R    V+++ KF+    L+ +Q ++ +             K+
Sbjct: 245 FHHGFGMFTTLGYLICGFR----VVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS 300
Query: 135 PMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQ 194
            ++  YDLS++  + SG APL KE+ +A+  R     + QGYG+TE    + +      +
Sbjct: 301 ELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDK 360
Query: 195 PFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           P     G+ G VV   + KVID +T  SL  N+ GE+C++GP +MK
Sbjct: 361 P-----GASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMK 401

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 14/226 (6%)
Query: 19  VAIEPDDPVALPF-SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLP 77
           V ++  + VAL   SSG+TGLPKGV LTH++++T  +   D    N  ++ G  VL V+P
Sbjct: 186 VEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGN-QVSPGTAVLTVVP 244
Query: 78  LFH---IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKN 134
             H   +++    L+C  R    V+++ KF+    L+ +Q ++ +             K+
Sbjct: 245 FHHGFGMFTTLGYLICGFR----VVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS 300
Query: 135 PMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQ 194
            ++  YDLS++  + SG APL KE+ +A+  R     + QGYG+TE    + +      +
Sbjct: 301 ELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDK 360
Query: 195 PFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           P     G+ G VV   + KVID +T  SL  N+ GE+C++GP +MK
Sbjct: 361 P-----GASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMK 401

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 14/226 (6%)
Query: 19  VAIEPDDPVALPF-SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLP 77
           V ++  + VAL   SSG+TGLPKGV LTH++++T  +   D    N  ++ G  VL V+P
Sbjct: 186 VEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGN-QVSPGTAVLTVVP 244
Query: 78  LFH---IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKN 134
             H   +++    L+C  R    V+++ KF+    L+ +Q ++ +             K+
Sbjct: 245 FHHGFGMFTTLGYLICGFR----VVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNKS 300
Query: 135 PMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQ 194
            ++  YDLS++  + SG APL KE+ +A+  R     + QGYG+TE    + +      +
Sbjct: 301 ELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDK 360
Query: 195 PFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           P     G+ G VV   + KVID +T  SL  N+ GE+C++GP +MK
Sbjct: 361 P-----GASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMK 401

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 97/217 (44%), Gaps = 12/217 (5%)
Query: 24  DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS 83
           DD  A+ ++SGTTG  KG  L+H +L ++    VD        T  DV++  LP++H + 
Sbjct: 155 DDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVD----YWRFTPDDVLIHALPIYHTHG 210
Query: 84  LNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLS 143
           L      +L A    + + KF+   +L+L  R  V              ++P +      
Sbjct: 211 LFVASNVTLFARGSXIFLPKFDPDKILDLXARATV--LXGVPTFYTRLLQSPRLTKETTG 268
Query: 144 SIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSC 203
             R+ +SG+APL  +      ++   A+L + YG TE     S      + P     G+ 
Sbjct: 269 HXRLFISGSAPLLADTHREWSAKTGHAVL-ERYGXTETNXNTSNPYDGDRVP-----GAV 322
Query: 204 GTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           G  +     +V DPETG  LP    G I ++GP + K
Sbjct: 323 GPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFK 359

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 96/216 (44%), Gaps = 12/216 (5%)
Query: 24  DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS 83
           DD  A+ ++SGTTG   G +L+H +L ++    VD        T  DV++  LP++H + 
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVD----YWRFTPDDVLIHALPIYHTHG 210
Query: 84  LNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLS 143
           L      +L A   ++ +  F+   +L+L+ R  V              ++P +      
Sbjct: 211 LFVASNVTLFARGSMIFLPXFDPDXILDLMARATV--LMGVPTFYTRLLQSPRLTXETTG 268
Query: 144 SIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSC 203
            +R+ +SG+APL  +      +    A+L + YGMTE     S      + P     G+ 
Sbjct: 269 HMRLFISGSAPLLADTHREWSAXTGHAVL-ERYGMTETNMNTSNPYDGDRVP-----GAV 322
Query: 204 GTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
           G  +     +V DPETG  LP    G I + GP + 
Sbjct: 323 GPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVF 358

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 96/216 (44%), Gaps = 12/216 (5%)
Query: 24  DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS 83
           DD  A+ ++SGTTG   G +L+H +L ++    VD        T  DV++  LP++H + 
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVD----YWRFTPDDVLIHALPIYHTHG 210
Query: 84  LNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLS 143
           L      +L A   ++ +  F+   +L+L+ R  V              ++P +      
Sbjct: 211 LFVASNVTLFARGSMIFLPXFDPDXILDLMARATV--LMGVPTFYTRLLQSPRLTXETTG 268
Query: 144 SIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSC 203
            +R+ +SG+APL  +      +    A+L + YGMTE     S      + P     G+ 
Sbjct: 269 HMRLFISGSAPLLADTHREWSAXTGHAVL-ERYGMTETNMNTSNPYDGDRVP-----GAV 322
Query: 204 GTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
           G  +     +V DPETG  LP    G I + GP + 
Sbjct: 323 GPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVF 358

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 96/216 (44%), Gaps = 12/216 (5%)
Query: 24  DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS 83
           DD  A+ ++SGTTG   G +L+H +L ++    VD        T  DV++  LP++H + 
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVD----YWRFTPDDVLIHALPIYHTHG 210
Query: 84  LNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLS 143
           L      +L A   ++ +  F+   +L+L+ R  V              ++P +      
Sbjct: 211 LFVASNVTLFARGSMIFLPXFDPDXILDLMARATV--LMGVPTFYTRLLQSPRLTXETTG 268
Query: 144 SIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSC 203
            +R+ +SG+APL  +      +    A+L + YGMTE     S      + P     G+ 
Sbjct: 269 HMRLFISGSAPLLADTHREWSAXTGHAVL-ERYGMTETNMNTSNPYDGDRVP-----GAV 322
Query: 204 GTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
           G  +     +V DPETG  LP    G I + GP + 
Sbjct: 323 GPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVF 358

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 21/235 (8%)
Query: 9   SEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSL---ITSVAQQVDGENPNLY 65
           + ADE   P V    DD + + ++SGTTG PKGVV TH+S+    +S A  +D       
Sbjct: 144 AAADE---PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID------- 193
Query: 66  LTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXX 125
           +   D +L  LP+FH+ +L +V+  ++R G  ++ M +F+   +  LI   RV       
Sbjct: 194 VRYRDRLLLPLPMFHVAALTTVIFSAMR-GVTLISMPQFDATKVWSLIVEERVCIGGAVP 252
Query: 126 XXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVL 185
                  + P  A+ D    R  ++G AP+ + L     ++  + +  QGY +TE+    
Sbjct: 253 AILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIEVV--QGYALTESCGGG 310
Query: 186 SMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           ++ L    +    K+GS G      ++ V   + G    H + GE+ I+   ++K
Sbjct: 311 TLLL---SEDALRKAGSAGRATMFTDVAV-RGDDGVIREHGE-GEVVIKSDILLK 360

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 21/235 (8%)
Query: 9   SEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSL---ITSVAQQVDGENPNLY 65
           + ADE   P V    DD + + ++SGTTG PKGVV TH+S+    +S A  +D       
Sbjct: 158 AAADE---PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID------- 207
Query: 66  LTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXX 125
           +   D +L  LP+FH+ +L +V+  ++R G  ++ M +F+   +  LI   RV       
Sbjct: 208 VRYRDRLLLPLPMFHVAALTTVIFSAMR-GVTLISMPQFDATKVWSLIVEERVCIGGAVP 266
Query: 126 XXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVL 185
                  + P  A+ D    R  ++G AP+ + L     ++  + +  QGY +TE+    
Sbjct: 267 AILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIEVV--QGYALTESCGGG 324
Query: 186 SMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           ++ L    +    K+GS G      ++ V   + G    H + GE+ I+   ++K
Sbjct: 325 TLLL---SEDALRKAGSAGRATMFTDVAV-RGDDGVIREHGE-GEVVIKSDILLK 374

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 114/239 (47%), Gaps = 36/239 (15%)
Query: 16  IPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCV 75
           +PE   +  DP  + ++SGTTG PKG V+  ++L T++    D        T  DV++  
Sbjct: 147 VPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADA----WQWTGEDVLVQG 202
Query: 76  LPLFHIYSLNSVLLCSLRAGAGVLLMQKFEI-GALLEL-----------IQRHRVSXXXX 123
           LPLFH++ L   +L  LR G  V  + +F   GA  EL              HR++    
Sbjct: 203 LPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDGATMLFGVPTMYHRIAETLP 262
Query: 124 XXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGP 183
                     +P +A   L+  R+++SG+A L     + + +   + ++ + YGMTE   
Sbjct: 263 A---------DPELAKA-LAGARLLVSGSAALPVHDHERIAAATGRRVI-ERYGMTET-- 309
Query: 184 VLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETG---ASLPHNQPGEICIRGPQIM 239
           +++  +    +P   ++G+ G  +   EL++++ E G   A+L     GEI +RGP + 
Sbjct: 310 LMNTSVRADGEP---RAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLF 364

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 111/256 (43%), Gaps = 28/256 (10%)
Query: 4   HFTVLSEADED---QIPEVAIEPDDPVALP--------FSSGTTGLPKGVVLTHKSLI-- 50
           HF V+ E   +      E   E  DPV +P        +++GTTGLPKGVV +H++L+  
Sbjct: 145 HFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLH 204
Query: 51  TSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALL 110
           +  A  VDG      L+  DVVL V+P+FH+ +       +L     VL   + +  +L+
Sbjct: 205 SLAASLVDGTA----LSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLV 260
Query: 111 ELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQA 170
           EL     V+                    + L ++R ++ G +   + L    R      
Sbjct: 261 ELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSL--IARFERMGV 318
Query: 171 ILGQGYGMTEAGPVL------SMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLP 224
            + QGYG+TE  PV+      S     +++   T     G  +    L+V D E G  +P
Sbjct: 319 EVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVP 377
Query: 225 HNQP--GEICIRGPQI 238
            +    GE+ ++GP I
Sbjct: 378 KDGKALGEVQLKGPWI 393

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 101/237 (42%), Gaps = 20/237 (8%)
Query: 14  DQIPEVAIEPDDPVAL-PFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVV 72
           +    V + P++ VAL P++ GTTG PKGV LTH +L  +  Q          L++ D +
Sbjct: 169 EDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATG----LSHXDTI 224
Query: 73  LCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHR--VSXXXXXXXXXXX 130
           +   P FH      V L  +  G   ++   F    L E I++++   S           
Sbjct: 225 VGCXPXFHSAEFGLVNL-XVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLV 283
Query: 131 XXKNPMVADYDLSSIRVVLSGAAPLGKELEDAL------RSRVPQAILGQGYGMTEAGPV 184
                    YD S ++V  +GA P+   L + L      +   P+    Q +G TEA P 
Sbjct: 284 NTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPX 343
Query: 185 LSMCLGFAKQPFP-TKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           ++        P    KS + G    + ELKVI  E G  L   + GEI IRGP I K
Sbjct: 344 VT-----TNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFK 395

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 100/235 (42%), Gaps = 19/235 (8%)
Query: 6   TVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLY 65
           TV+ +     I   +   DD  ++ F+SGTTG  K V  T ++   S      G   +L 
Sbjct: 145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAI----GCKESLG 200
Query: 66  LTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXX 125
                  L VLP++HI  L SVLL ++  G  V ++ KF    +L +I+  R++      
Sbjct: 201 FDRDTNWLSVLPIYHISGL-SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVP 259
Query: 126 XXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVL 185
                  +  +   Y+L   +++L GA      +E AL+  +P   +   +GMTE     
Sbjct: 260 QTLNWLMQQGLHEPYNLQ--KILLGGAKLSATMIETALQYNLP---IYNSFGMTET---C 311
Query: 186 SMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           S  L    +    +  + G    N ++K+ +P           GE+ I+G  +M 
Sbjct: 312 SQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH------GELMIKGANVMN 360

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 91/215 (42%), Gaps = 11/215 (5%)
Query: 24  DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS 83
           DD     +SSG+TG PKG V TH +L  +         P L +   DVV     LF  Y 
Sbjct: 183 DDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYA---KPILGIAENDVVFSAAKLFFAYG 239
Query: 84  LNSVLLCSLRAGAGVLLM-QKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDL 142
           L + L   L  GA  +LM ++    A+   +  HR +              +P +     
Sbjct: 240 LGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARAD 299
Query: 143 SSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGS 202
            +IR+  S    L +E+ +   +     IL  G G TE      + +  + +    + G+
Sbjct: 300 VAIRICTSAGEALPREIGERFTAHFGCEIL-DGIGSTEM-----LHIFLSNRAGAVEYGT 353
Query: 203 CGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQ 237
            G  V   E+++ D E G ++P  + G++ I+GP 
Sbjct: 354 TGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPS 387

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 17/209 (8%)
Query: 32  SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCS 91
           ++   G P+G +++  +L+ + +  VD       LT  DV L +LPLFH+  L  ++L  
Sbjct: 168 TAAVGGRPRGALISQGNLLIAQSSLVDAWR----LTEADVNLGMLPLFHVTGLG-LMLTL 222
Query: 92  LRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSG 151
            +AG   ++  KF+       I+ H+V+                  A   L+S+R V   
Sbjct: 223 QQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQ--AAPAQLASLRAVTGL 280
Query: 152 AAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAE 211
             P   E  +   +  P A     +G +E   + +        P+  +  S G  +    
Sbjct: 281 DTP---ETIERFEATCPNATFWATFGQSETSGLSTFA------PYRDRPKSAGRPLFWRT 331
Query: 212 LKVIDPETGASLPHNQPGEICIRGPQIMK 240
           + V+D E    LP  + GEI +RGP + K
Sbjct: 332 VAVVDAED-RPLPPGEVGEIVLRGPTVFK 359

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 22  EPDDPVALPFSSGTTGLPKGVVLTHK---SLITSVAQQVDGENPNLYLTNGDVVLCVLPL 78
           EP  P  + ++SGTTGLPK  ++  +   S +  ++ QV      L     +VVL ++PL
Sbjct: 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGLMPL 205
Query: 79  FHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMV- 137
           +H+    +VL+ +L      +++++F     L+L+Q+ +V+                   
Sbjct: 206 YHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHA 265
Query: 138 -ADYDLSSIR-VVLSGAAPLGKELEDALRSRVPQAILGQ---GYGMTEAGPVLSM 187
            +   L S+R V  +GA      + DA+   V Q + G+   GYG TEA   L M
Sbjct: 266 GSSLKLDSLRHVTFAGAT-----MPDAVLETVHQHLPGEKVNGYGTTEAMNSLYM 315

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 19/175 (10%)
Query: 22  EPDDPVALPFSSGTTGLPKGVVLTHK---SLITSVAQQVDGENPNLYLTNGDVVLCVLPL 78
           EP  P  + ++SGTTGLPK  ++  +   S +  ++ QV      L     +VVL ++PL
Sbjct: 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGLMPL 205
Query: 79  FHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMV- 137
           +H+    +VL+ +L      +++++F     L+L+Q+ +V+                   
Sbjct: 206 YHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHA 265
Query: 138 -ADYDLSSIR-VVLSGAAPLGKELEDALRSRVPQAILGQ---GYGMTEAGPVLSM 187
            +   L S+R V  +GA      + DA+   V Q + G+    YG TEA   L M
Sbjct: 266 GSSLKLDSLRHVTFAGAT-----MPDAVLETVHQHLPGEKVNAYGTTEAMNSLYM 315

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 22  EPDDPVALPFSSGTTGLPKGVVLTHK---SLITSVAQQVDGENPNLYLTNGDVVLCVLPL 78
           EP  P  + ++SGTTGLPK  ++  +   S +  ++ QV      L     +VVL ++PL
Sbjct: 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGLMPL 205
Query: 79  FHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVS 119
           +H+    +VL+ +L      +++++F     L+L+Q+ +V+
Sbjct: 206 YHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVT 246

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 21/221 (9%)
Query: 23  PDDPVAL-PFSSGTTGLPKGVVLTHKSLITSV--AQQVDGENPNLYLTNGDVVLCVLPLF 79
           P D VA    S G+TG PK +  TH     SV  + ++ G N N  L      LC LP  
Sbjct: 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRL------LCALPAP 242
Query: 80  HIYSLNSV-LLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVA 138
           H + L+S   L  L AG  V++    E      +IQRH+V+             +     
Sbjct: 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQY 302
Query: 139 DYDLSSIRVVLSGAAPLGKELEDALRSRVPQAI---LGQGYGMTEAGPVLSMCLGFAKQP 195
              + S++++  G    G    ++L  +VP+ +   L Q +GM E     +      +Q 
Sbjct: 303 KDQIQSLKLLQVG----GASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQI 358
Query: 196 FPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP 236
           F T+     +   + E+K++D E    +P  + G +  RGP
Sbjct: 359 FTTQGRPISS---DDEIKIVD-EQYREVPEGEIGMLATRGP 395

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 22  EPDDPVALPFSSGTTGLPKGVVLTHK---SLITSVAQQVDGENPNLYLTNGDVVLCVLPL 78
           EP  P  + ++SGTTGLPK  ++  +   S +  ++ QV      L     +VVL ++PL
Sbjct: 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGLMPL 205
Query: 79  FHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVS 119
           +H+    +VL+ +L      +++++F     L+L+Q+ +V+
Sbjct: 206 YHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT 246

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 22  EPDDPVALPFSSGTTGLPKGVVLTHK---SLITSVAQQVDGENPNLYLTNGDVVLCVLPL 78
           EP  P  + ++SGTTGLPK  ++  +   S +  ++ QV      L     +VVL ++PL
Sbjct: 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGLMPL 205
Query: 79  FHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVS 119
           +H+    +VL+ +L      +++++F     L+L+Q+ +V+
Sbjct: 206 YHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT 246

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 17/165 (10%)
Query: 7   VLSEADEDQIPE--VAIE---PDDPVALPFSSGTTGLPKGVVLTHKSLITSV-AQQVDGE 60
           VLS A    +PE  VA++   P+D   L ++SG+T  P+GV++TH+ +  ++ A   DG 
Sbjct: 153 VLSHAWFKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDG- 211
Query: 61  NPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV--LLMQKFEIGAL--LELIQRH 116
              + L  GD  +  LP +H   L   LL  +     V  L  Q F    L  L+LI ++
Sbjct: 212 ---IKLRPGDRCVSWLPFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKN 268
Query: 117 R--VSXXXXXXXXXXXXXKNPM-VADYDLSSIRVVLSGAAPLGKE 158
           R  VS              N   +A+ DLS  RV   GA P+  E
Sbjct: 269 RGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAE 313

>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 89/225 (39%), Gaps = 9/225 (4%)
Query: 17  PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVL 76
           PE A++ D+   + ++SG+TG PKGV +T+  L++     V+  N    L  G V L   
Sbjct: 137 PEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFN----LQTGQVFLNQA 192
Query: 77  PLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPM 136
           P     S+  +   SL  G  +  + K  I    +L      S                M
Sbjct: 193 PFSFDLSVMDI-YPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLM 251
Query: 137 VADYD---LSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAK 193
            A +    L +++  L     L  E+   L  R P+A +   YG TEA   ++      +
Sbjct: 252 EASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEE 311
Query: 194 QPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQI 238
                KS   G    +  L +I  E G   P  + GEI I GP +
Sbjct: 312 VLDQYKSLPVGYCKSDCRL-LIMKEDGTIAPDGEKGEIVIVGPSV 355

>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 89/225 (39%), Gaps = 9/225 (4%)
Query: 17  PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVL 76
           PE A++ D+   + ++SG+TG PKGV +T+  L++     V+  N    L  G V L   
Sbjct: 137 PEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFN----LQTGQVFLNQA 192
Query: 77  PLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPM 136
           P     S+  +   SL  G  +  + K  I    +L      S                M
Sbjct: 193 PFSFDLSVMDI-YPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLM 251
Query: 137 VADYD---LSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAK 193
            A +    L +++  L     L  E+   L  R P+A +   YG TEA   ++      +
Sbjct: 252 EASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEE 311
Query: 194 QPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQI 238
                KS   G    +  L +I  E G   P  + GEI I GP +
Sbjct: 312 VLDQYKSLPVGYCKSDCRL-LIMKEDGTIAPDGEKGEIVIVGPSV 355

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 22  EPDDPVALPFSSGTTGLPKGVVLTHKSLITSV---AQQVDGENPNLYLTNGDVVLCVLPL 78
           EP  P  + ++SGTTGLPK  ++  ++  + V   + QV      L     +VVL + PL
Sbjct: 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQV-----GLRHGRHNVVLGLXPL 205
Query: 79  FHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVS 119
           +H+    +VL+ +L      +++++F     L+L+Q+ +V+
Sbjct: 206 YHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT 246

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 74/171 (43%), Gaps = 16/171 (9%)
Query: 15  QIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLC 74
           ++PEV  +  D   L  S G+TGL K +  TH   I S+ + V+      +L +  V L 
Sbjct: 175 KLPEV--KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE----VCWLDHSTVYLA 228
Query: 75  VLPLFHIYSLNSV-LLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXK 133
            LP+ H Y L+S  +L  L AG  V+L           LI+R +V+              
Sbjct: 229 ALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMD 288
Query: 134 NPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILG----QGYGMTE 180
                  DLSS++V+  G A    E      +R  +A+ G    Q +GM E
Sbjct: 289 AASSRRDDLSSLQVLQVGGAKFSAEA-----ARRVKAVFGCTLQQVFGMAE 334

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 92/225 (40%), Gaps = 19/225 (8%)
Query: 23  PDDPVA-LPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 81
           P D VA    S GTTG PK +  TH     SV + V+        T     LC +P  H 
Sbjct: 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE----ICQFTQQTRYLCAIPAAHN 237
Query: 82  YSLNSV-LLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVAD- 139
           Y+++S   L    AG  V+L           LI++H+V+             +  +  + 
Sbjct: 238 YAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES 297
Query: 140 -YDLSSIRVVLSGAAPLGKELEDALRSRVPQAI---LGQGYGMTEAGPVLSMCLGFAKQP 195
              L+S++++  G    G  L   L +R+P  I   L Q +GM E G V    L  + + 
Sbjct: 298 RAQLASLKLLQVG----GARLSATLAARIPAEIGCQLQQVFGMAE-GLVNYTRLDDSAEK 352
Query: 196 FPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
                G    +  + E+ V D E G  LP  + G +  RGP   +
Sbjct: 353 IIHTQGY--PMCPDDEVWVADAE-GNPLPQGEVGRLMTRGPYTFR 394

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 74/171 (43%), Gaps = 16/171 (9%)
Query: 15  QIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLC 74
           ++PEV  +  D   L  S G+TGL K +  TH   I S+ + V+      +L +  V L 
Sbjct: 175 KLPEV--KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE----VCWLDHSTVYLA 228
Query: 75  VLPLFHIYSLNSV-LLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXK 133
            LP  H Y L+S  +L  L AG  V+L           LI+R +V+              
Sbjct: 229 ALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAXVWXD 288
Query: 134 NPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILG----QGYGMTE 180
                  DLSS++V+  G A    E      +R  +A+ G    Q +G  E
Sbjct: 289 AASSRRDDLSSLQVLQVGGAKFSAEA-----ARRVKAVFGCTLQQVFGXAE 334

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 17  PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCV 75
           P  AI+P+DP  + ++SGTTG PKG + TH + I  + + VD     +  ++ D  L V
Sbjct: 600 PATAIDPNDPAYIMYTSGTTGKPKGNITTHAN-IQGLVKHVD----YMAFSDQDTFLSV 653

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 87/217 (40%), Gaps = 17/217 (7%)
Query: 17  PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSL----ITSVAQQVDGENPNLYLTNGDVV 72
           P   ++ +DP+ L ++SG+TG PKGV  +        + ++    D    +++ T GD+ 
Sbjct: 255 PCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIG 314
Query: 73  LCVLPLFHIYSLNSVLL--CSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXX 130
                  H Y +   LL  C+     G      +      ++I  H+V+           
Sbjct: 315 WIT---GHTYVVYGPLLYGCATLVFEGTPAYPNYS--RYWDIIDEHKVTQFYVAPTALRL 369
Query: 131 XXK--NPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILG--QGYGMTEAGPVLS 186
             +  +  + ++ L S+R + S   P+  E+ +    ++ +  +     Y  TE+G  L 
Sbjct: 370 LKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLV 429
Query: 187 MCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASL 223
             L  A    P K GS        +  V+DP TG  L
Sbjct: 430 TPL--AGGVTPMKPGSASFPFFGIDAVVLDPNTGEEL 464

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/256 (20%), Positives = 99/256 (38%), Gaps = 40/256 (15%)
Query: 19  VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPL 78
            +I+ +D   L ++SG+T  PKGV ++H +L+ ++ +     + N    +  ++   LP 
Sbjct: 162 TSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXN----DETIIFSWLPP 217
Query: 79  FHIYSLNSVLLCSLRAGAGVLLMQKFEI----GALLELIQRHRVSXXXXXXXXXXXXXKN 134
            H   L   +L  +  G   +    F       + L+ I +++ +             K 
Sbjct: 218 HHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKR 277
Query: 135 ---PMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG-----YGMTEAGPVLS 186
                    DLSS     +GA P+ +E  +       +    +      YG+ EA  +++
Sbjct: 278 IREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQAFKEFGFRKEAFYPCYGLAEATLLVT 337
Query: 187 --------MCLGFAKQPF--------------PTKSGSCGTVVRNAELKVIDPETGASLP 224
                     L  AK+ F                K  S G  ++  E+K+IDP+T     
Sbjct: 338 GGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQ--EVKIIDPDTLIPCD 395
Query: 225 HNQPGEICIRGPQIMK 240
            +Q GEI ++   + K
Sbjct: 396 FDQVGEIWVQSNSVAK 411

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-128
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-125
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-111
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-109
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-106
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-73
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	2e-69
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	7e-69
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	2e-68
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	1e-66
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	2e-65
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	1e-63
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	1e-62
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	9e-62
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	4e-60
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	4e-37
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	1e-36
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	2e-35
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	3e-34
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	1e-31
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	4e-31
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-29
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-18
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	2e-18
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-17
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	6e-17
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	6e-17
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	7e-14
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	1e-12
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	4e-09
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	7e-09
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	1e-08

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  373 bits (959), Expect = e-128
 Identities = 167/240 (69%), Positives = 210/240 (87%)

Query: 1   NCLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE 60
            CLHF+ L++ADE++ P+V I PDD VALP+SSGTTGLPKGV+LTHK LITSVAQQVDG+
Sbjct: 155 GCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGD 214

Query: 61  NPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSV 120
           NPNLY  + DV+LCVLP+FHIY+LNS++LC LR GA +L+M KFEIG+LL LI++++VS+
Sbjct: 215 NPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSI 274

Query: 121 AAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE 180
           A VVPP+++++AK+P +  +DLSS+R++ SG APLGKELED +R++ PQA LGQGYGMTE
Sbjct: 275 APVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE 334

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           AGPVL+MCL FAK+PF  K G+CGTVVRNAE+K++DPETGASLP NQPGEICIRG QIMK
Sbjct: 335 AGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMK 394

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  376 bits (968), Expect = e-125
 Identities = 170/243 (69%), Positives = 201/243 (82%), Gaps = 3/243 (1%)

Query: 1   NCLHFTVLSEADEDQ---IPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQV 57
            CL FT L+++  +    I  V I PDD VALP+SSGTTGLPKGV+LTHK L+TSVAQQV
Sbjct: 199 GCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQV 258

Query: 58  DGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHR 117
           DGENPNLY  + DV+LCVLP+FHIY+LNS++LC LR GA +L+M KFEI  LLELIQR +
Sbjct: 259 DGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCK 318

Query: 118 VSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG 177
           V+VA +VPP+VLA+AK+     YDLSSIRVV SGAAPLGKELEDA+ ++ P A LGQGYG
Sbjct: 319 VTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYG 378

Query: 178 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQ 237
           MTEAGPVL+M LGFAK+PFP KSG+CGTVVRNAE+K++DP+TG SL  NQPGEICIRG Q
Sbjct: 379 MTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQ 438

Query: 238 IMK 240
           IMK
Sbjct: 439 IMK 441

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  329 bits (845), Expect = e-111
 Identities = 75/239 (31%), Positives = 122/239 (51%), Gaps = 8/239 (3%)

Query: 3   LHFTVLSEADEDQIPEVAIEP-DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGEN 61
           +               V ++  +    +  SSG+TGLPKGV LTH++++T  +   D   
Sbjct: 170 IKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY 229

Query: 62  PNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVA 121
            N  ++ G  VL V+P  H + +    L  L  G  V+++ KF+    L+ +Q ++ +  
Sbjct: 230 GN-QVSPGTAVLTVVPFHHGFGMF-TTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSV 287

Query: 122 AVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181
            +VP L   L K+ ++  YDLS++  + SG APL KE+ +A+  R     + QGYG+TE 
Sbjct: 288 ILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET 347

Query: 182 GPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
              + +           K G+ G VV   + KVID +T  SL  N+ GE+C++GP +MK
Sbjct: 348 TSAIIITP-----EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMK 401

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  324 bits (833), Expect = e-109
 Identities = 78/232 (33%), Positives = 115/232 (49%), Gaps = 7/232 (3%)

Query: 9   SEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTN 68
              + D +PE          +  SSG+TGLPKGV L H++     +   D    N     
Sbjct: 175 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQI-IP 233

Query: 69  GDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLV 128
              +L V+P  H + +    L  L  G  V+LM +FE    L  +Q +++  A +VP L 
Sbjct: 234 DTAILSVVPFHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 292

Query: 129 LALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMC 188
              AK+ ++  YDLS++  + SG APL KE+ +A+  R     + QGYG+TE    + + 
Sbjct: 293 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT 352

Query: 189 LGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
                     K G+ G VV   E KV+D +TG +L  NQ GE+C+RGP IM 
Sbjct: 353 P-----EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMS 399

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  315 bits (809), Expect = e-106
 Identities = 70/249 (28%), Positives = 114/249 (45%), Gaps = 18/249 (7%)

Query: 1   NCLHFTVLSEADEDQIPEVAIEP-DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDG 59
                + + ++  +    V + P +D   +P++ GTTG+PKGV+LTH +L  +  Q    
Sbjct: 156 EVNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVA 215

Query: 60  ENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVS 119
                  ++ D ++  +P+FH      V L  +  G   ++M  F    L E I++++ +
Sbjct: 216 TGL----SHMDTIVGCMPMFHSAEFGLVNLM-VTVGNEYVVMGMFNQEMLAENIEKYKGT 270

Query: 120 VAAVVPPLVLALAKN--PMVADYDLSSIRVVLSGAAPLGKELEDALRSR------VPQAI 171
            +  VPP +  L          YD S ++V  +GA P+   L + L          P+  
Sbjct: 271 FSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLR 330

Query: 172 LGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEI 231
             Q +GMTEA P+++            KS + G  + + ELKVI  E G  L   + GEI
Sbjct: 331 HNQIWGMTEACPMVTTNPPLR----LDKSTTQGVPMSDIELKVISLEDGRELGVGESGEI 386

Query: 232 CIRGPQIMK 240
            IRGP I K
Sbjct: 387 VIRGPNIFK 395

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  231 bits (591), Expect = 1e-73
 Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 12/236 (5%)

Query: 5   FTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNL 64
            T  +    +    +    DD  A+ ++SGTTG  KG +L+H +L ++    VD      
Sbjct: 136 LTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDY----W 191

Query: 65  YLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVV 124
             T  DV++  LP++H + L      +L A   ++ + KF+   +L+L+ R   +V   V
Sbjct: 192 RFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMAR--ATVLMGV 249

Query: 125 PPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPV 184
           P     L ++P +       +R+ +SG+APL  +      ++   A+L + YGMTE    
Sbjct: 250 PTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVL-ERYGMTETNMN 308

Query: 185 LSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
            S              G+ G  +     +V DPETG  LP    G I ++GP + K
Sbjct: 309 TSNPY-----DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFK 359

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  220 bits (562), Expect = 2e-69
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 17/230 (7%)

Query: 11  ADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGD 70
           A +           D   +  ++   G P+G +++  +L+ + +  VD       LT  D
Sbjct: 147 ASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDA----WRLTEAD 202

Query: 71  VVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLA 130
           V L +LPLFH+  L  ++L   +AG   ++  KF+       I+ H+V+V A   P++  
Sbjct: 203 VNLGMLPLFHVTGLG-LMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGN 261

Query: 131 LAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLG 190
           +      A   L+S+R V     P   E  +   +  P A     +G +E   + +    
Sbjct: 262 ILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFA-- 314

Query: 191 FAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
               P+  +  S G  +    + V+D E    LP  + GEI +RGP + K
Sbjct: 315 ----PYRDRPKSAGRPLFWRTVAVVDAE-DRPLPPGEVGEIVLRGPTVFK 359

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  219 bits (559), Expect = 7e-69
 Identities = 59/243 (24%), Positives = 108/243 (44%), Gaps = 16/243 (6%)

Query: 3   LHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENP 62
           L    +       +PE   +  DP  + ++SGTTG PKG V+  ++L T++    D    
Sbjct: 134 LERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADA--- 190

Query: 63  NLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAA 122
               T  DV++  LPLFH++ L   +L  LR G  V  + +F        +     ++  
Sbjct: 191 -WQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLF 248

Query: 123 VVPPLVLALAKNPMV---ADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT 179
            VP +   +A+           L+  R+++SG+A L     + + +   + ++ + YGMT
Sbjct: 249 GVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVI-ERYGMT 307

Query: 180 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETG--ASLPHNQPGEICIRGPQ 237
           E     S+           ++G+ G  +   EL++++ +    A+L     GEI +RGP 
Sbjct: 308 ETLMNTSVRA-----DGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPN 362

Query: 238 IMK 240
           +  
Sbjct: 363 LFT 365

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  218 bits (557), Expect = 2e-68
 Identities = 59/236 (25%), Positives = 111/236 (47%), Gaps = 12/236 (5%)

Query: 5   FTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNL 64
                 +     P V    DD + + ++SGTTG PKGVV TH+S+ ++ +         +
Sbjct: 151 LAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAS----TI 206

Query: 65  YLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVV 124
            +   D +L  LP+FH+ +L +V+  ++  G  ++ M +F+   +  LI   RV +   V
Sbjct: 207 DVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAV 265

Query: 125 PPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPV 184
           P ++  + + P  A+ D    R  ++G AP+ + L     ++     + QGY +TE+   
Sbjct: 266 PAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGG 323

Query: 185 LSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
            ++ L    +    K+GS G      ++ V   + G    H + GE+ I+   ++K
Sbjct: 324 GTLLLS---EDALRKAGSAGRATMFTDVAVRGDD-GVIREHGE-GEVVIKSDILLK 374

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  213 bits (544), Expect = 1e-66
 Identities = 52/235 (22%), Positives = 100/235 (42%), Gaps = 16/235 (6%)

Query: 11  ADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGD 70
           +    I +   EP  P  + ++SGTTGLPK  ++  ++  + V          L     +
Sbjct: 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFM--STQVGLRHGRHN 197

Query: 71  VVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLA 130
           VVL ++PL+H+    +VL+ +L      +++++F     L+L+Q+ +V+     P  + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257

Query: 131 LAKNPMVA--DYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMC 188
           LA     A     L S+R V    A +   + + +   +P   +   YG TEA   L M 
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMR 316

Query: 189 LGFAKQPFPTKSGSCGTVVRNAELKVIDPETGAS--LPHNQPGEICIRGP-QIMK 240
                     K+G+       +E++++    G    + + + GE+ +        
Sbjct: 317 --------QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFV 363

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  210 bits (536), Expect = 2e-65
 Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 19/237 (8%)

Query: 4   HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPN 63
           + TV+ +     I   +   DD  ++ F+SGTTG  K V  T ++   S     +    +
Sbjct: 143 NETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE----S 198

Query: 64  LYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAV 123
           L        L VLP++HI  L+ VLL ++  G  V ++ KF    +L +I+  R++  ++
Sbjct: 199 LGFDRDTNWLSVLPIYHISGLS-VLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISL 257

Query: 124 VPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGP 183
           VP  +  L +  +   Y+L  I     G A L   + +          +   +GMTE   
Sbjct: 258 VPQTLNWLMQQGLHEPYNLQKIL---LGGAKLSATMIETALQY--NLPIYNSFGMTETCS 312

Query: 184 VLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
                     +    +  + G    N ++K+ +P           GE+ I+G  +M 
Sbjct: 313 QFLTATP---EMLHARPDTVGMPSANVDVKIKNPNKE------GHGELMIKGANVMN 360

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  205 bits (525), Expect = 1e-63
 Identities = 64/239 (26%), Positives = 99/239 (41%), Gaps = 11/239 (4%)

Query: 3   LHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENP 62
             F  L +A        A   DD     +SSG+TG PKG V TH +L  +         P
Sbjct: 162 PLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAK---P 218

Query: 63  NLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM-QKFEIGALLELIQRHRVSVA 121
            L +   DVV     LF  Y L + L   L  GA  +LM ++    A+   +  HR +V 
Sbjct: 219 ILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVF 278

Query: 122 AVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181
             VP L   +  +P +      +IR+  S    L +E+ +   +     IL  G G TE 
Sbjct: 279 YGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEIL-DGIGSTEM 337

Query: 182 GPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
             +         +    + G+ G  V   E+++ D E G ++P  + G++ I+GP    
Sbjct: 338 LHIFLSN-----RAGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAV 390

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  203 bits (519), Expect = 1e-62
 Identities = 61/239 (25%), Positives = 99/239 (41%), Gaps = 12/239 (5%)

Query: 4   HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPN 63
            F  L +   + +    ++  D   L  S G+TGL K +  TH   I S+ + V+     
Sbjct: 162 EFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE----V 217

Query: 64  LYLTNGDVVLCVLPLFHIYSLNSV-LLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAA 122
            +L +  V L  LP+ H Y L+S  +L  L AG  V+L           LI+R +V++ A
Sbjct: 218 CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITA 277

Query: 123 VVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAG 182
           +VPPL +           DLSS++V+  G A    E    +++      L Q +GM E  
Sbjct: 278 LVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG-CTLQQVFGMAEGL 336

Query: 183 PVLSMCLGFAKQPFPTKSGSCGTVVR-NAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
              +        P      + G  +    E +V D      +   + G +  RGP  ++
Sbjct: 337 VNYT----RLDDPEEIIVNTQGKPMSPYDESRVWDD-HDRDVKPGETGHLLTRGPYTIR 390

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  201 bits (513), Expect = 9e-62
 Identities = 52/238 (21%), Positives = 93/238 (39%), Gaps = 12/238 (5%)

Query: 5   FTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNL 64
              +    E  +   +   D+      S G+TG PK +  TH     SV    +      
Sbjct: 172 LDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAE----IC 227

Query: 65  YLTNGDVVLCVLPLFHIYSLNSV-LLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAV 123
            L +   +LC LP  H + L+S   L  L AG  V++    E      +IQRH+V++A++
Sbjct: 228 GLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASL 287

Query: 124 VPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGP 183
           VP  V+   +        + S++++  G A   + L   +   +   +  Q +GM E   
Sbjct: 288 VPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQ-QVFGMAEGLV 346

Query: 184 VLSMCLGFAKQPFPTKSGSCGT-VVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
             +               + G  +  + E+K++D      +P  + G +  RGP    
Sbjct: 347 NYT----RLDDSDEQIFTTQGRPISSDDEIKIVDE-QYREVPEGEIGMLATRGPYTFC 399

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  198 bits (506), Expect = 4e-60
 Identities = 58/240 (24%), Positives = 92/240 (38%), Gaps = 14/240 (5%)

Query: 5   FTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNL 64
                    +         D+      S GTTG PK +  TH     SV + V+      
Sbjct: 165 LQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE----IC 220

Query: 65  YLTNGDVVLCVLPLFHIYSLNSV-LLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAV 123
             T     LC +P  H Y+++S   L    AG  V+L           LI++H+V+V A+
Sbjct: 221 QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTAL 280

Query: 124 VPPLVLAL--AKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181
           VPP V     A     +   L+S++++  G A L   L   + + +   +  Q +GM E 
Sbjct: 281 VPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQ-QVFGMAEG 339

Query: 182 GPVLSMCLGFAKQPFPTKSGSCGTVVR-NAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
               +               + G  +  + E+ V D E G  LP  + G +  RGP   +
Sbjct: 340 LVNYT----RLDDSAEKIIHTQGYPMCPDDEVWVADAE-GNPLPQGEVGRLMTRGPYTFR 394

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score =  132 bits (333), Expect = 4e-37
 Identities = 39/244 (15%), Positives = 75/244 (30%), Gaps = 29/244 (11%)

Query: 13  EDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVV 72
            + +P+  +  D    +  S GTTG PK VV     +   ++ ++ G        +G+  
Sbjct: 81  ANLVPQ-GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNT- 138

Query: 73  LCVLPLF-HIYSLNSVLLCSLRAGAGVLL---------------------MQKFEIGALL 110
           L  +P   HI    +        G    +                          +  + 
Sbjct: 139 LAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQ 198

Query: 111 ELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRV-PQ 169
             +    +      PP++  L K P V      S+  +  G   L  +    + S + P 
Sbjct: 199 NTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPD 258

Query: 170 AILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPG 229
                 YG T A  V    L        ++     +        V+D  T  ++ + + G
Sbjct: 259 CEFSASYGSTSALGVSRSLLI----TSESQQVIYDSFSPFITYDVVDSITAQTVEYGERG 314

Query: 230 EICI 233
            + +
Sbjct: 315 NVIV 318

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  134 bits (339), Expect = 1e-36
 Identities = 49/237 (20%), Positives = 89/237 (37%), Gaps = 14/237 (5%)

Query: 2   CLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGEN 61
            L+F  L          V     +  A+ F+SGT+GLPK    ++ SL            
Sbjct: 184 WLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTG 243

Query: 62  PNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLL--MQKFEIGALLELIQRHRVS 119
               L   D++  +     I ++   L+     GA   +  + KF+   +L+ +  + + 
Sbjct: 244 ----LQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIK 299

Query: 120 VAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT 179
                 P+V  +     ++ Y    ++  ++    L  E  +  R++    I  + YG T
Sbjct: 300 SMM-GAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIR-ESYGQT 357

Query: 180 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP 236
           E G    +           K G  GT     ++++ID + G  LP    G+I IR  
Sbjct: 358 ETGLTCMVSKT-----MKIKPGYMGTAASCYDVQIIDDK-GNVLPPGTEGDIGIRVK 408

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  130 bits (330), Expect = 2e-35
 Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 25/245 (10%)

Query: 8   LSEADED-QIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKS--LITSVAQQVDGENPNL 64
           L E  +  ++PE          + +++GTTGLPKGVV +H++  L +  A  VDG     
Sbjct: 164 LGEEADPVRVPE-----RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA--- 215

Query: 65  YLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVV 124
            L+  DVVL V+P+FH+ +       +L     VL   + +  +L+EL     V+  A V
Sbjct: 216 -LSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGV 274

Query: 125 PPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSR-VPQAILGQGYGMTEAGP 183
           P + LALA       + L ++R ++ G +   + L        V    + QGYG+TE  P
Sbjct: 275 PTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVE---VRQGYGLTETSP 331

Query: 184 VLSMCL---GFAKQPFPTKS---GSCGTVVRNAELKVIDPETGASLPHN--QPGEICIRG 235
           V+                K       G  +    L+V D E G  +P +    GE+ ++G
Sbjct: 332 VVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEE-GRPVPKDGKALGEVQLKG 390

Query: 236 PQIMK 240
           P I  
Sbjct: 391 PWITG 395

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  126 bits (319), Expect = 3e-34
 Identities = 48/275 (17%), Positives = 92/275 (33%), Gaps = 39/275 (14%)

Query: 2   CLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVD--G 59
            +   +L     +       E      L ++SG+T  P GVV++H+++  +  Q +    
Sbjct: 161 IIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYF 220

Query: 60  ENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEI----GALLELIQR 115
            + +        ++  LP +H   L   +   +  G   +L             + L+  
Sbjct: 221 ADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMAS 280

Query: 116 HRVSVAAVVPP----LVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRV---- 167
              + +A  P     L      +  +A  DL +I  +LSG+  +          R     
Sbjct: 281 DFHAFSA-APNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFN 339

Query: 168 --PQAILGQGYGMTEA-----------GPVL------SMCLGFAKQPFPTKSG---SCGT 205
              + I    Y + EA            P        S+  G AK      +    S   
Sbjct: 340 LQERVIRP-SYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYM- 397

Query: 206 VVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
           + R+  ++++D +T    P    GEI + G  +  
Sbjct: 398 LPRSPIVRIVDSDTCIECPDGTVGEIWVHGDNVAN 432

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  120 bits (304), Expect = 1e-31
 Identities = 50/275 (18%), Positives = 100/275 (36%), Gaps = 44/275 (16%)

Query: 2   CLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGEN 61
            +    +           +I+ +D   L ++SG+T  PKGV+++H +L+ ++ +      
Sbjct: 145 AIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTS-- 202

Query: 62  PNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEI----GALLELIQRHR 117
              ++ +  ++   LP  H   L   +L  +  G   ++M  F       + L+ I +++
Sbjct: 203 --FHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYK 260

Query: 118 VSVAAVVPP----LVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRV------ 167
            +++   P       +   +       DLSS     +GA P+ +E  +            
Sbjct: 261 ATISG-SPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFR 319

Query: 168 PQAILGQGYGMTEA-----------GPVL------SMCLGFAKQPFPTKSG-----SCGT 205
            +A     YG+ EA                                    G     S G 
Sbjct: 320 KEAFYP-CYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGN 378

Query: 206 VVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
            ++  E+K+IDP+T      +Q GEI ++   + K
Sbjct: 379 PIQ--EVKIIDPDTLIPCDFDQVGEIWVQSNSVAK 411

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  114 bits (287), Expect = 2e-29
 Identities = 47/237 (19%), Positives = 89/237 (37%), Gaps = 26/237 (10%)

Query: 9   SEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTN 68
           S   E    EV+ + +D   + FSSGT G PK V   +      +   +  +     + +
Sbjct: 210 SPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYP---LGHILTAKYW-QNVED 265

Query: 69  GDVVLCVLPLFH-----IYSLNSVLLCSLRAGAGVLL--MQKFEIGALLELIQRHRVSVA 121
             +   V             +   L     AG  V +    +FE   +LE   ++ V+  
Sbjct: 266 DGLHYTV-----ADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTF 320

Query: 122 AVVPPLVL-ALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE 180
              PP +   L K   ++ Y+ S+++  +    PL  E+ +         ++ +G+G TE
Sbjct: 321 C-APPTIYRFLIKED-LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLM-EGFGQTE 377

Query: 181 AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQ 237
               ++            K GS G      +++++D + G      + GEI I   +
Sbjct: 378 TVVTIATFPW-----MEPKPGSIGKPTPGYKIELMDRD-GRLCEVGEEGEIVINTME 428

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 82.6 bits (205), Expect = 2e-18
 Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 13/233 (5%)

Query: 11  ADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGD 70
           A+       +++ DD   + F+SGTTG PKGV ++H +L++     ++  +    +    
Sbjct: 132 AEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIE--DAAFDVPKQP 189

Query: 71  VVLCVLPLFHIYSLN-SV--LLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSVAAVV 124
            +L        YS + SV     +L  G  +  + K    +   L   I +  V +    
Sbjct: 190 QML----AQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTST 245

Query: 125 PPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPV 184
           P        +       + ++         L       L  R P A +   YG TEA   
Sbjct: 246 PSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVA 305

Query: 185 LSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQ 237
           LS      +          G    ++   +ID + G  L   + GEI + GP 
Sbjct: 306 LSAIEITREMVDNYTRLPIGYPKPDSPTYIIDED-GKELSSGEQGEIIVTGPA 357

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 82.7 bits (205), Expect = 2e-18
 Identities = 38/252 (15%), Positives = 82/252 (32%), Gaps = 31/252 (12%)

Query: 4   HFTVLSEADEDQIPEVAIEPDDPVALPFS----------SGTTGLPKGVVLTHKS---LI 50
              VL   ++  I  ++ +    +   +           SG+TG PKGV ++  +     
Sbjct: 145 ETKVLDTKNQSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFS 204

Query: 51  TSVAQQVDGENPNLY-LTNGDVVLCVLPLFHIYSLN-SV--LLCSLRAGAGVLLMQKFEI 106
            +  + +    P    L      L         + +  +  +  + R G   +  ++  +
Sbjct: 205 DAWGKLIGNVAPKSLELGGVGKFL----CLASRAFDVHIGEMFLAWRFGLCAVTGERLSM 260

Query: 107 G-ALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRS 165
              L    +   V+ A +VP L+      P     D   +  +  G   +    +    S
Sbjct: 261 LDDLPRTFRELGVTHAGIVPSLLDQTGLVPE----DAPHLVYLGVGGEKMTPRTQQIWSS 316

Query: 166 RVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPH 225
              +  L   YG TE     ++     +    + +   G  + ++   V+ P +   +  
Sbjct: 317 S-DRVALVNVYGPTEV----TIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKK 371

Query: 226 NQPGEICIRGPQ 237
              GE+ I G  
Sbjct: 372 GMAGELVIEGSL 383

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 78.7 bits (195), Expect = 4e-17
 Identities = 49/227 (21%), Positives = 92/227 (40%), Gaps = 15/227 (6%)

Query: 17  PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVL 76
            +  ++  +   + ++SG+TG PKGV ++  +L +           +  ++ G + L   
Sbjct: 136 QDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICA----DFPVSGGKIFL--- 188

Query: 77  PLFHIYSLN-SV--LLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSVAAVVPPLVLA 130
                +S + SV  L   L++G  +  + K    +   L E +++  ++V    P  V  
Sbjct: 189 -NQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQM 247

Query: 131 LAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLG 190
              +P  +   L      +     L   +  AL  R P+A +   YG TEA   ++    
Sbjct: 248 CLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEI 307

Query: 191 FAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQ 237
                  ++S   G    +  + ++D E G  LP  + GEI I GP 
Sbjct: 308 TNDVISRSESLPVGFAKPDMNIFIMDEE-GQPLPEGEKGEIVIAGPS 353

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 78.3 bits (194), Expect = 6e-17
 Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 19/229 (8%)

Query: 17  PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLI-TSVAQQVDGENPNLY-LTNGDVVLC 74
           PE A++ D+   + ++SG+TG PKGV +T+  L+  +            + L  G V L 
Sbjct: 137 PEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAV------EDFNLQTGQVFL- 189

Query: 75  VLPLFHIYSLN-SV--LLCSLRAGAGVLLMQKFEI---GALLELIQRHRVSVAAVVPPLV 128
                  +S + SV  +  SL  G  +  + K  I     L   +++  + V    P   
Sbjct: 190 ---NQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFA 246

Query: 129 LALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMC 188
                    ++  L +++  L     L  E+   L  R P+A +   YG TEA   ++  
Sbjct: 247 EMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGI 306

Query: 189 LGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQ 237
               +     KS   G    +  L ++  + G   P  + GEI I GP 
Sbjct: 307 HVTEEVLDQYKSLPVGYCKSDCRLLIMKED-GTIAPDGEKGEIVIVGPS 354

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 78.4 bits (194), Expect = 6e-17
 Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 32/233 (13%)

Query: 17  PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVL 76
           P  AI+P+DP  + ++SGTTG PKG + TH ++   V          +  ++ D  L   
Sbjct: 600 PATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHV-----DYMAFSDQDTFL--- 651

Query: 77  PLFHIYSLN-SV--LLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSVAAVVPPLVLA 130
                Y+ +        S+   A +++  +    +   L +LI +  V+V      L   
Sbjct: 652 -SVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNL 710

Query: 131 LAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLG 190
           L       +  +  +R +L G               +    L   YG TE   V +    
Sbjct: 711 LTD---AGEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEG-TVFATAHV 766

Query: 191 FAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQP------GEICIRGPQ 237
               P    S   G  + NA + +++         +Q       GE+CI G  
Sbjct: 767 VHDLPDSISSLPIGKPISNASVYILN-------EQSQLQPFGAVGELCISGMG 812

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 69.5 bits (171), Expect = 7e-14
 Identities = 48/239 (20%), Positives = 70/239 (29%), Gaps = 30/239 (12%)

Query: 10  EADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNG 69
            A    +       D    + FSSGTTG PK +  TH  +      Q       L     
Sbjct: 150 PAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLGQ-----SFLAFAPQ 204

Query: 70  DVVLCVLPLFHIYSLN-SV--LLCSLRAGAGVLLMQK--FEIGALLELIQRHRVSVAAVV 124
              L    +    S + +   +  +L  G   +L      + G L +LI       A + 
Sbjct: 205 MRFL----VNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLT 260

Query: 125 PPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPV 184
             L   L          L  +R +L+G   L          R P+  L  GYG TE    
Sbjct: 261 ASLFNTLVDLDPDC---LGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTEN-TT 316

Query: 185 LSMCLGFAKQPFPTKSGSCGTVVRNAELKVID------PETGASLPHNQPGEICIRGPQ 237
            + C               G  +    + ++D       E          GEI   G  
Sbjct: 317 FTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDR------AGEIVAFGAG 369

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 66.0 bits (162), Expect = 1e-12
 Identities = 47/231 (20%), Positives = 90/231 (38%), Gaps = 38/231 (16%)

Query: 17  PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVL 76
             V  +  D   + ++SGTTG PKG +L HK +        +    +L +T  D +    
Sbjct: 175 LHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFEN----SLNVTEKDRIG--- 227

Query: 77  PLFHIYSLN-SV--LLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSVAAVVPPLVLA 130
             F   S + SV  +  +L  GA + ++ K    +     + I +  ++V  + P  V+ 
Sbjct: 228 -QFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVH 286

Query: 131 LAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLG 190
           L          + SI+ +++  +     L +  + +V        YG TE   + +    
Sbjct: 287 LDPE------RILSIQTLITAGSATSPSLVNKWKEKVT---YINAYGPTET-TICATTWV 336

Query: 191 FAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQP------GEICIRG 235
             K+         G  ++N ++ ++D        + Q       GE+CI G
Sbjct: 337 ATKETIGHSV-PIGAPIQNTQIYIVD-------ENLQLKSVGEAGELCIGG 379

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 55/235 (23%), Positives = 83/235 (35%), Gaps = 48/235 (20%)

Query: 20  AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLY---LTNGDVVLCVL 76
           A+  D    +  SSGTTG P  V  T   +        +    ++       GD V    
Sbjct: 86  AVPQDRISRIHASSGTTGKPTVVGYTAADI----DTWANLVARSIRAAGARRGDKVHVSY 141

Query: 77  PL--------FHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLV 128
                      H Y      L  +  G G    Q       ++LIQ  R  +  V P  +
Sbjct: 142 GYGLFTGGLGAH-YGAERAGLTVIPFGGGQTEKQ-------VQLIQDFRPDIIMVTPSYM 193

Query: 129 LALAK--NPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILG----QGYGMTEAG 182
           L++A        D   SS+R+ + GA P      + +R  + +  +G      YG++E  
Sbjct: 194 LSIADEIERQGLDPVQSSLRIGIFGAEPWT----NDMRVAI-EQRMGIDAVDIYGLSEV- 247

Query: 183 PVLSMCLGFAKQPFPTKSGSCGTVVRNAE----LKVIDPETGASLPHNQPGEICI 233
               M  G A           G  +   E     ++IDPETG  LP  + GE+  
Sbjct: 248 ----MGPGVA---SECVETKDGPTI--WEDHFYPEIIDPETGEVLPDGELGELVF 293

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 50/228 (21%), Positives = 83/228 (36%), Gaps = 59/228 (25%)

Query: 32  SSGTTGLPKGVVLTHKSL---ITSVAQQVDGENPNLY---LTNGDVVLCVLPL------- 78
           SSGTTG P  +V +   L      VA+        LY   +   DV              
Sbjct: 94  SSGTTGNPTVIVHSQHDLDSWANLVAR-------CLYMVGIRKTDVFQNSSGYGMFTGGL 146

Query: 79  -FHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVP--PLVLALAKNP 135
            F  Y    +   ++ A AG    Q       ++ I   + +    +P   + LA     
Sbjct: 147 GFQ-YGAERLGCLTVPAAAGNSKRQ-------IKFISDFKTTALHAIPSYAIRLAEVFQE 198

Query: 136 MVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILG----QGYGMTE-AGPVLSM-CL 189
              D   ++++ ++ GA P      D  R ++ + +L       +GMTE  GP ++  C 
Sbjct: 199 EGIDPRETTLKTLVIGAEPHT----DEQRRKI-ERMLNVKAYNSFGMTEMNGPGVAFEC- 252

Query: 190 GFAKQPFPTKSGSCGTVVRNAE----LKVIDPETGASLPHNQPGEICI 233
                         G      E    +++IDPETG  +P  + GE+ +
Sbjct: 253 ----------QEQNGMHF--WEDCYLVEIIDPETGEPVPEGEIGELVL 288

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 53/234 (22%), Positives = 84/234 (35%), Gaps = 46/234 (19%)

Query: 20  AIEPDDPVALPFSSGTTGLPKGVVLTHKSL---ITSVAQQVDGENPNLY---LTNGDVVL 73
           A+  +  V +  SSGTTG P  V  T + +       A+       ++       GD + 
Sbjct: 88  AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTAR-------SIRAAGGRPGDTLH 140

Query: 74  CVLPL--------FHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVP 125
                         H Y    +    +    G    Q       ++LI+     +  V P
Sbjct: 141 NAFGYGLFTGGLGIH-YGAERLGCMVVPMSGGQTEKQ-------VQLIRDFEPKIILVTP 192

Query: 126 PLVLALAK--NPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGP 183
             +L L         D   SS+++ + GA P  + L + + +RV        YG++E   
Sbjct: 193 SYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGLSEV-- 249

Query: 184 VLSMCLGFAKQPFPTKSGSCGTVVRNAE----LKVIDPETGASLPHNQPGEICI 233
              M  G A +   TK    G V+   E     ++IDP TG  LP    GE+  
Sbjct: 250 ---MGPGVACECVETK---DGPVI--WEDHFYPEIIDPVTGEVLPDGSQGELVF 295

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	97.3
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	97.13
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	93.11
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	92.83
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	92.79
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	92.77
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	91.94
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	91.91
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	91.69
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	91.53
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	91.11
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	90.68
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	90.56
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	90.51
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	90.06
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	89.7
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	89.39
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	89.36
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	89.36
3ezx_A	215	MMCP 1, monomethylamine corrinoid protein 1; N ter	89.22
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	88.46
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	88.23
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	88.15
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	87.44
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	84.85
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	84.68
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	84.36
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	83.68
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	82.85

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=5e-43  Score=293.12  Aligned_cols=237  Identities=70%  Similarity=1.183  Sum_probs=205.8

Q ss_pred             chhhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhh
Q 039504            4 HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS   83 (240)
Q Consensus         4 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g   83 (240)
                      .++++.+......+....+++|+++|+|||||||.||+|.++|+++...+..........+.+.++|++++.+|++|.++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~  237 (536)
T 3ni2_A          158 HFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYA  237 (536)
T ss_dssp             ETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHH
T ss_pred             CHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHH
Confidence            45555554444445556788999999999999999999999999998887766554444557889999999999999999


Q ss_pred             hHHHHHHHhhcCceEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHH
Q 039504           84 LNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDAL  163 (240)
Q Consensus        84 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~  163 (240)
                      +...++.++..|+++++.+++++..+++.++++++|++.++|+++..+.+........++++|.+++||+++++++.+++
T Consensus       238 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~  317 (536)
T 3ni2_A          238 LNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTV  317 (536)
T ss_dssp             HHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHH
T ss_pred             HHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHH
Confidence            97678899999999999999999999999999999999999999999999887777788999999999999999999999


Q ss_pred             HHhCCCCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          164 RSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       164 ~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ++.|+++++++.||+||++.++..+............+++|+|+++++++|+|++++++++.|+.|||+|+||++++
T Consensus       318 ~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~  394 (536)
T 3ni2_A          318 RAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMK  394 (536)
T ss_dssp             HHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCS
T ss_pred             HHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccch
Confidence            99998999999999999987765543333334455678999999999999999999999999999999999999874

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=2.4e-40  Score=277.47  Aligned_cols=210  Identities=34%  Similarity=0.546  Sum_probs=184.9

Q ss_pred             CCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC
Q 039504           24 DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK  103 (240)
Q Consensus        24 ~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~  103 (240)
                      +|+++++|||||||.||+|.++|+++............ .+++.++|++++.+|++|.+++...++.++ .|+++++.++
T Consensus       192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~  269 (548)
T 2d1s_A          192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY-GNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTK  269 (548)
T ss_dssp             TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT-SCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCC
T ss_pred             CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh-ccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCC
Confidence            89999999999999999999999999888776654321 246789999999999999999875567777 9999999989


Q ss_pred             CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccccccc
Q 039504          104 FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGP  183 (240)
Q Consensus       104 ~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~  183 (240)
                      ++++.+++.++++++|++.++|++++.|.+........++++|.+++||+++++++.+++++.|+++++++.||+||++.
T Consensus       270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~  349 (548)
T 2d1s_A          270 FDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTS  349 (548)
T ss_dssp             CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSS
T ss_pred             CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccc
Confidence            99999999999999999999999999999877665667889999999999999999999999998889999999999987


Q ss_pred             chhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          184 VLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ++..+.     ......+++|+|.|+++++|+|++++++++.|+.|||+|+||.+++
T Consensus       350 ~~~~~~-----~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~  401 (548)
T 2d1s_A          350 AIIITP-----EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMK  401 (548)
T ss_dssp             EEEECC-----TTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCS
T ss_pred             eeeecC-----cccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhh
Confidence            655431     1234567899999999999999888999999999999999999874

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=3.1e-40  Score=293.08  Aligned_cols=224  Identities=73%  Similarity=1.193  Sum_probs=198.6

Q ss_pred             CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504           17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGA   96 (240)
Q Consensus        17 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~   96 (240)
                      +.....++|+++|+|||||||.||+|.++|+++...+..........+.+.++|++++.+|++|.+++...++.++..|+
T Consensus       218 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~  297 (979)
T 3tsy_A          218 DSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGA  297 (979)
T ss_dssp             CCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTC
T ss_pred             CcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCc
Confidence            34457789999999999999999999999999998877665544445678899999999999999999767889999999


Q ss_pred             eEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccc
Q 039504           97 GVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGY  176 (240)
Q Consensus        97 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  176 (240)
                      ++++.+++++..+++.++++++|++.++|+++..|.+........++++|.+++||+++++++.+++.+.|+++++++.|
T Consensus       298 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~Y  377 (979)
T 3tsy_A          298 AILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGY  377 (979)
T ss_dssp             EEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECE
T ss_pred             EEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeee
Confidence            99999999999999999999999999999999999998777777889999999999999999999999999999999999


Q ss_pred             cccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          177 GMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       177 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      |+||++.++..+............+++|+|+++++++|+|++++++++.|++|||+|+||.+++
T Consensus       378 G~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~  441 (979)
T 3tsy_A          378 GMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMK  441 (979)
T ss_dssp             ECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCS
T ss_pred             chhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccc
Confidence            9999987665543333333445678899999999999999999999999999999999999874

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=1.5e-39  Score=272.95  Aligned_cols=212  Identities=35%  Similarity=0.526  Sum_probs=181.8

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .++|+++|+|||||||.||+|.++|.++............ ..++.++|++++.+|++|.+++. ..+.++..|+++++.
T Consensus       188 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~~  265 (550)
T 3rix_A          188 RDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF-GNQIIPDTAILSVVPFHHGFGMF-TTLGYLICGFRVVLM  265 (550)
T ss_dssp             TTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT-SCCCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEEC
T ss_pred             CCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhc-cccCCCCcEEEEechHHHHHHHH-HHHHHHHcCCEEEEe
Confidence            3578999999999999999999999999887766554321 24678999999999999999987 577889999999999


Q ss_pred             cCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccccc
Q 039504          102 QKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA  181 (240)
Q Consensus       102 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~  181 (240)
                      +++++..+++.++++++|++.++|++++.|.+........++++|.+++||+++++++.+++++.|+...+++.||+||+
T Consensus       266 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~  345 (550)
T 3rix_A          266 YRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTET  345 (550)
T ss_dssp             SSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGG
T ss_pred             CCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCcc
Confidence            99999999999999999999999999999999877777788999999999999999999999999955569999999999


Q ss_pred             ccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          182 GPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      +..+..+.     ......+++|+|.|+++++|+|++++++++.|+.|||+|+||++++
T Consensus       346 ~~~~~~~~-----~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~  399 (550)
T 3rix_A          346 TSAILITP-----EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMS  399 (550)
T ss_dssp             SSEEEECC-----TTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCS
T ss_pred             ccceecCC-----CCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcch
Confidence            87765542     2234568899999999999999989999999999999999999874

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=1.4e-39  Score=270.29  Aligned_cols=212  Identities=29%  Similarity=0.459  Sum_probs=186.1

Q ss_pred             CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504           17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGA   96 (240)
Q Consensus        17 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~   96 (240)
                      ......++|+++|+|||||||.||+|.++|.++.........    .+++.++|+++..+|++|.+++....+.++..|+
T Consensus       148 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~  223 (503)
T 4fuq_A          148 ATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVD----YWRFTPDDVLIHALPIYHTHGLFVASNVTLFARG  223 (503)
T ss_dssp             CCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTC
T ss_pred             CcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHH----HhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCC
Confidence            344667899999999999999999999999999988877666    4567999999999999999998756788899999


Q ss_pred             eEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccc
Q 039504           97 GVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGY  176 (240)
Q Consensus        97 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  176 (240)
                      ++++.+.+++..+++.++  ++|++.++|+++..+.+........++++|.+++||+++++++.+++.+.+ +.++++.|
T Consensus       224 ~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~Y  300 (503)
T 4fuq_A          224 SMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERY  300 (503)
T ss_dssp             EEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECC
T ss_pred             EEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceE
Confidence            999999999999999998  899999999999999998777777788999999999999999999999998 78999999


Q ss_pred             cccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          177 GMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       177 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      |+||++..+...     .......+++|+|+|+++++|+|+++++++|.|+.|||+|+||++++
T Consensus       301 G~TE~~~~~~~~-----~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~  359 (503)
T 4fuq_A          301 GMTETNMNTSNP-----YDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFK  359 (503)
T ss_dssp             EETTTEECBCCC-----SSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCC
T ss_pred             cccccCcccccC-----CCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhh
Confidence            999998654322     22344567899999999999999999999999999999999999874

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=1.7e-39  Score=270.29  Aligned_cols=231  Identities=22%  Similarity=0.280  Sum_probs=193.7

Q ss_pred             chhhHhhcCCCC-CCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhh
Q 039504            4 HFTVLSEADEDQ-IPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIY   82 (240)
Q Consensus         4 ~~~~l~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~   82 (240)
                      .++++....... .......++|+++|+|||||||.||+|.++|.++.........    .+++.++|+++..+|++|..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~  197 (511)
T 3e7w_A          122 SAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICA----DFPVSGGKIFLNQAPFSFDL  197 (511)
T ss_dssp             EHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHH----HSTTTTTCEEEECSCTTSTH
T ss_pred             cHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH----hcCCCccceEEEeCCccHHH
Confidence            344554433222 2234567899999999999999999999999999988877665    44678999999999999998


Q ss_pred             hhHHHHHHHhhcCceEEEccC---CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHH
Q 039504           83 SLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKEL  159 (240)
Q Consensus        83 g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~  159 (240)
                      ++. .++.++..|+++++.+.   +++..+++.++++++|++.++|++++.+..........++++|.++++|+++++++
T Consensus       198 ~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~  276 (511)
T 3e7w_A          198 SVM-DLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSV  276 (511)
T ss_dssp             HHH-HHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHH
T ss_pred             HHH-HHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHH
Confidence            876 68889999999999875   78999999999999999999999999999887766777889999999999999999


Q ss_pred             HHHHHHhCCCCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504          160 EDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM  239 (240)
Q Consensus       160 ~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~  239 (240)
                      .+++.+.|+++++++.||+||++..+..+.............++|+|.|+++++|+| +++++++.|+.|||+|+||.++
T Consensus       277 ~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~  355 (511)
T 3e7w_A          277 AKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVS  355 (511)
T ss_dssp             HHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSC
T ss_pred             HHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccC
Confidence            999999998999999999999987665432111111223456799999999999999 6699999999999999999987


Q ss_pred             C
Q 039504          240 K  240 (240)
Q Consensus       240 ~  240 (240)
                      +
T Consensus       356 ~  356 (511)
T 3e7w_A          356 R  356 (511)
T ss_dssp             C
T ss_pred             h
Confidence            4

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=1.3e-38  Score=266.19  Aligned_cols=226  Identities=27%  Similarity=0.370  Sum_probs=181.3

Q ss_pred             chhhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHH-HHHHHhhhcCCCCCccccCCcEEEEecchHHhh
Q 039504            4 HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSL-ITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIY   82 (240)
Q Consensus         4 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l-~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~   82 (240)
                      .++++.+...........+++|+++++|||||||.||+|.++|.++ .........    .+++.++|+++..+|++|.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~  238 (529)
T 2v7b_A          163 LFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKP----ILGIAENDVVFSAAKLFFAY  238 (529)
T ss_dssp             BHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCC----CCCCCTTCEEEESSCTTSHH
T ss_pred             chhhhhccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhh----ccCCCCCcEEEEeecHHHHH
Confidence            3555555333333344567899999999999999999999999998 444443332    45788999999999999999


Q ss_pred             hhHHHHHHHhhcCceEEEc-cCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHH
Q 039504           83 SLNSVLLCSLRAGAGVLLM-QKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELED  161 (240)
Q Consensus        83 g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~  161 (240)
                      ++...++.++..|+++++. +.+++..+++.++++++|++.++|+++..+.+..........++|.+++||+++++++.+
T Consensus       239 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~  318 (529)
T 2v7b_A          239 GLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGE  318 (529)
T ss_dssp             HHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHH
T ss_pred             HHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHH
Confidence            9876678899999999987 578999999999999999999999999999887544332134799999999999999999


Q ss_pred             HHHHhCCCCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          162 ALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       162 ~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ++++.| ++++++.||+||++.++..+.     ......+++|+|.++++++|+| ++++++|.|+.|||+|+||.+++
T Consensus       319 ~~~~~~-g~~i~~~YG~TE~~~~~~~~~-----~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~  390 (529)
T 2v7b_A          319 RFTAHF-GCEILDGIGSTEMLHIFLSNR-----AGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAV  390 (529)
T ss_dssp             HHHHHH-SCCEEEEEECTTTSSEEEECC-----TTCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCC
T ss_pred             HHHHHh-CCceeeeEchhhcCceeeccc-----cCCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCccc
Confidence            999998 899999999999976554331     1124567899999999999999 67999999999999999999874

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=4.9e-39  Score=274.26  Aligned_cols=229  Identities=21%  Similarity=0.295  Sum_probs=188.4

Q ss_pred             chhhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHh-hhcCCCCCccccCCcEEEEecchHHhh
Q 039504            4 HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQ-QVDGENPNLYLTNGDVVLCVLPLFHIY   82 (240)
Q Consensus         4 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~   82 (240)
                      .|+++.+..........++++|+++|+|||||||.||+|.++|.++...... ...    .+++.++|++++.+|++|+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~  311 (652)
T 1pg4_A          236 WWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKY----VFDYHPGDIYWCTADVGWVT  311 (652)
T ss_dssp             EHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHH
T ss_pred             eHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHH----hcCCCCCCEEEEccCCeeee
Confidence            3566665444334445567899999999999999999999999998766533 222    34678999999999999999


Q ss_pred             hhHHHHHHHhhcCceEEEccC----CCHHHHHHHHHhccceeeeechHHHHHHHhCCC--CCCCCccchhhhhccCCCCC
Q 039504           83 SLNSVLLCSLRAGAGVLLMQK----FEIGALLELIQRHRVSVAAVVPPLVLALAKNPM--VADYDLSSIRVVLSGAAPLG  156 (240)
Q Consensus        83 g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~~~~lr~v~~~G~~~~  156 (240)
                      ++...++.++..|+++++.++    +++..+++.++++++|++.++|++++.|.+...  ....+++++|.++++||+++
T Consensus       312 g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~  391 (652)
T 1pg4_A          312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPIN  391 (652)
T ss_dssp             HHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCC
T ss_pred             chHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCC
Confidence            986578899999999999864    689999999999999999999999999998754  23456789999999999999


Q ss_pred             HHHHHHHHHhCC--CCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEe
Q 039504          157 KELEDALRSRVP--QAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR  234 (240)
Q Consensus       157 ~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~  234 (240)
                      +++.+++.+.++  ++++++.||+||++..+....   ........+++|+|+++++++|+| +++++++.|+.|||+|+
T Consensus       392 ~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~---~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~  467 (652)
T 1pg4_A          392 PEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL---PGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVIT  467 (652)
T ss_dssp             HHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCC---TTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEEC
T ss_pred             HHHHHHHHHHhCCCCCcEEccccCcccccceecCC---CCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEc
Confidence            999999999983  288999999999986654431   111234568999999999999999 66999999999999999


Q ss_pred             C--CCCCC
Q 039504          235 G--PQIMK  240 (240)
Q Consensus       235 ~--~~~~~  240 (240)
                      |  |++++
T Consensus       468 g~~p~~~~  475 (652)
T 1pg4_A          468 DSWPGQAR  475 (652)
T ss_dssp             SCCTTCCC
T ss_pred             cCCCchhh
Confidence            9  67763

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=3.4e-39  Score=268.63  Aligned_cols=217  Identities=24%  Similarity=0.318  Sum_probs=185.1

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      .....++|+++++|||||||.||+|.++|.++.........    .+++.++|+++..+|++|..++. .++.++..|++
T Consensus       138 ~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~  212 (512)
T 3fce_A          138 EHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE----DFNLQTGQVFLNQAPFSFDLSVM-DIYPSLVTGGT  212 (512)
T ss_dssp             GGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHH----HTTCCSSCEEEECSCTTSGGGHH-HHHHHHHTTCE
T ss_pred             cccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHH----hcCCCCCCEEEEeCCccHhHHHH-HHHHHHhCCCE
Confidence            44567899999999999999999999999999988877665    44678999999999999999986 68899999999


Q ss_pred             EEEccC---CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccc
Q 039504           98 VLLMQK---FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ  174 (240)
Q Consensus        98 ~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  174 (240)
                      +++.++   +++..+++.++++++|++.++|++++.+..........++++|.++++|+++++++.+++.+.|+++++++
T Consensus       213 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~  292 (512)
T 3fce_A          213 LWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMN  292 (512)
T ss_dssp             EEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE
T ss_pred             EEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEe
Confidence            999876   78999999999999999999999999999887777778889999999999999999999999998999999


Q ss_pred             cccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          175 GYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       175 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      .||+||++..+................++|+|.++++++|+| +++++++.|+.|||+|+||++++
T Consensus       293 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~  357 (512)
T 3fce_A          293 TYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSV  357 (512)
T ss_dssp             EECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCS
T ss_pred             CcccChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccCh
Confidence            999999987665432111001122456799999999999999 77999999999999999999874

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=3.6e-38  Score=265.68  Aligned_cols=225  Identities=20%  Similarity=0.254  Sum_probs=186.2

Q ss_pred             cchhhHhhcCCCCCCC----CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecch
Q 039504            3 LHFTVLSEADEDQIPE----VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPL   78 (240)
Q Consensus         3 ~~~~~l~~~~~~~~~~----~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~   78 (240)
                      .++.++.+........    ....++|+++++|||||||.||+|.++|.++.........    ..++.+++++++..|+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  275 (580)
T 3etc_A          200 IDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKY----WQNVEDDGLHYTVADS  275 (580)
T ss_dssp             EEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHT----TSCCCTTCEEEECCCT
T ss_pred             ccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHH----hhCCCCCceEEEeCCh
Confidence            3455555544433221    3577899999999999999999999999988777655443    3467899999999999


Q ss_pred             HHhhhhHHHHHHHhhcCceEEEc--cCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCC
Q 039504           79 FHIYSLNSVLLCSLRAGAGVLLM--QKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLG  156 (240)
Q Consensus        79 ~~~~g~~~~~~~~l~~G~~~v~~--~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~  156 (240)
                      .|..+.+..++.++..|+++++.  ..+++..+++.++++++|++.++|++++.|.+. .....+++++|.+++|||+++
T Consensus       276 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~  354 (580)
T 3etc_A          276 GWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLN  354 (580)
T ss_dssp             TSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTTCCEEEECSSCCC
T ss_pred             HHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCccceEEEEccCCCC
Confidence            99888876788899999999887  569999999999999999999999999999886 334557789999999999999


Q ss_pred             HHHHHHHHHhCCCCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeC-
Q 039504          157 KELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRG-  235 (240)
Q Consensus       157 ~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~-  235 (240)
                      +++.+++.+.+ ++++++.||+||++..+....     ......+++|+|.|+++++|+| +++++++.|+.|||+|+| 
T Consensus       355 ~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-----~~~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~  427 (580)
T 3etc_A          355 PEVFNRFLEFT-GIKLMEGFGQTETVVTIATFP-----WMEPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTM  427 (580)
T ss_dssp             HHHHHHHHHHH-SCCCEEEECCTTSSCCEECCT-----TSCCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECT
T ss_pred             HHHHHHHHHHh-CCeEecccccccccceeecCC-----CCCCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecC
Confidence            99999999988 889999999999986554431     2234668999999999999999 569999999999999997 


Q ss_pred             ----CCCC
Q 039504          236 ----PQIM  239 (240)
Q Consensus       236 ----~~~~  239 (240)
                          +.++
T Consensus       428 ~g~~~~~~  435 (580)
T 3etc_A          428 EGKPVGLF  435 (580)
T ss_dssp             TCCCTTCC
T ss_pred             CCCCCeee
Confidence                5665

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=4.7e-38  Score=264.55  Aligned_cols=223  Identities=21%  Similarity=0.277  Sum_probs=184.7

Q ss_pred             chhhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHH--HHHhhhcCCCCCccccCCcEEEEecchHHh
Q 039504            4 HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLIT--SVAQQVDGENPNLYLTNGDVVLCVLPLFHI   81 (240)
Q Consensus         4 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~--~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~   81 (240)
                      .++++.+............++|+++|+|||||||.||+|.++|. +..  ..... .    .+++.++|+++..+|++|.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~----~~~~~~~d~~~~~~p~~~~  259 (570)
T 3c5e_A          186 NFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-G----WTGLQASDIMWTISDTGWI  259 (570)
T ss_dssp             EHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-T----TTSCCTTCEEEECCCTTSH
T ss_pred             cHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-h----hcCCCCCceEEEcCchHHH
Confidence            35555554443334445678999999999999999999999999 444  33222 2    4578899999999999999


Q ss_pred             hhhHHHHHHHhhcCceEEEcc--CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHH
Q 039504           82 YSLNSVLLCSLRAGAGVLLMQ--KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKEL  159 (240)
Q Consensus        82 ~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~  159 (240)
                      .++...++.++..|+++++.+  .+++..+++.++++++|++.++|++++.|.+.. .....++++|.+++||+++++++
T Consensus       260 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~  338 (570)
T 3c5e_A          260 LNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPET  338 (570)
T ss_dssp             HHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHH
T ss_pred             HHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHH
Confidence            998767888999999998876  689999999999999999999999999998863 33446789999999999999999


Q ss_pred             HHHHHHhCCCCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEe-----
Q 039504          160 EDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR-----  234 (240)
Q Consensus       160 ~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~-----  234 (240)
                      .+++++.+ ++++++.||+||++..+....     ......+++|+|.++++++|+| ++++++|.|+.|||+|+     
T Consensus       339 ~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-----~~~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~  411 (570)
T 3c5e_A          339 LENWRAQT-GLDIRESYGQTETGLTCMVSK-----TMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIR  411 (570)
T ss_dssp             HHHHHHHH-SCCCEEEEEETTTEEEEECCT-----TSCCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBC
T ss_pred             HHHHHHHh-CCchhhccchhhcccceecCc-----ccccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCC
Confidence            99999988 889999999999986554321     1234567899999999999999 66999999999999999     


Q ss_pred             CCCCCC
Q 039504          235 GPQIMK  240 (240)
Q Consensus       235 ~~~~~~  240 (240)
                      ||++++
T Consensus       412 g~~v~~  417 (570)
T 3c5e_A          412 PIGIFS  417 (570)
T ss_dssp             CTTCCC
T ss_pred             Cchhhc
Confidence            888764

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=5e-39  Score=269.65  Aligned_cols=228  Identities=30%  Similarity=0.456  Sum_probs=190.8

Q ss_pred             chhhHhhcCCCCCCCCCCCC-CCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhh
Q 039504            4 HFTVLSEADEDQIPEVAIEP-DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIY   82 (240)
Q Consensus         4 ~~~~l~~~~~~~~~~~~~~~-~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~   82 (240)
                      .++++..............+ +|+++|+|||||||.||+|.++|.++.........    .+++.++|+++..+|++|..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~  234 (549)
T 3g7s_A          159 SLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAV----ATGLSHMDTIVGCMPMFHSA  234 (549)
T ss_dssp             CHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHH----HHCCCTTCEEECCSCTTSHH
T ss_pred             CHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHH----HcCCCCCCEEEEeCcHHHHH
Confidence            45555555444434444445 89999999999999999999999999988877665    45678999999999999999


Q ss_pred             hhHHHHHHHhhcCceEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCC--CCccchhhhhccCCCCCHHHH
Q 039504           83 SLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVAD--YDLSSIRVVLSGAAPLGKELE  160 (240)
Q Consensus        83 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~--~~~~~lr~v~~~G~~~~~~~~  160 (240)
                      ++.. ++.++..|+++++.+.+++..+++.++++++|++.++|++++.|.+......  ..++++|.+++||+++++++.
T Consensus       235 ~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~  313 (549)
T 3g7s_A          235 EFGL-VNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALV  313 (549)
T ss_dssp             HHHH-HTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHH
T ss_pred             HHHH-HHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHH
Confidence            9874 7888999999999999999999999999999999999999999987644333  567899999999999999999


Q ss_pred             HHHHHh----CC--CCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEe
Q 039504          161 DALRSR----VP--QAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR  234 (240)
Q Consensus       161 ~~~~~~----~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~  234 (240)
                      +++.+.    ++  ++++++.||+||++.++.....    .......++|+|.++++++|+|++++++++.|+.|||+|+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~----~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~  389 (549)
T 3g7s_A          314 EKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP----LRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIR  389 (549)
T ss_dssp             HHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCG----GGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEE
T ss_pred             HHHHHHHHhhcCCccccccceEeccccchhhhcCCc----cccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEE
Confidence            999988    52  3899999999999877655421    1123567899999999999999899999999999999999


Q ss_pred             CCCCCC
Q 039504          235 GPQIMK  240 (240)
Q Consensus       235 ~~~~~~  240 (240)
                      ||++++
T Consensus       390 g~~v~~  395 (549)
T 3g7s_A          390 GPNIFK  395 (549)
T ss_dssp             STTSCS
T ss_pred             Ccchhh
Confidence            999874

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=3.5e-39  Score=269.98  Aligned_cols=212  Identities=28%  Similarity=0.406  Sum_probs=180.6

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHH-HHHHHhhcCce
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNS-VLLCSLRAGAG   97 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~l~~G~~   97 (240)
                      ....++|+++++|||||||.||+|.++|+++.........    .+++.++|++++.+|++|.+++.. .++.++..|++
T Consensus       177 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~  252 (539)
T 1mdb_A          177 PEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE----VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGR  252 (539)
T ss_dssp             CCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH----HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCE
T ss_pred             CCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH----hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCE
Confidence            4567899999999999999999999999999888776655    446789999999999999999874 57899999999


Q ss_pred             EEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccc
Q 039504           98 VLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG  177 (240)
Q Consensus        98 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  177 (240)
                      +++.+.+++..+++.++++++|++.++|++++.+.+........++++|.+++||+++++++.+++++.+ ++++++.||
T Consensus       253 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG  331 (539)
T 1mdb_A          253 VVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFG  331 (539)
T ss_dssp             EEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEE
T ss_pred             EEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEc
Confidence            9999999999999999999999999999999999876554556788999999999999999999999998 799999999


Q ss_pred             ccccccchhhccCCCCCCCCCCCCccccccCC-ceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          178 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRN-AELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       178 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~-~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      +||++..+...    .........++|+|+++ .+++|+| +++++++.|+.|||+|+||++++
T Consensus       332 ~TE~~~~~~~~----~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~  390 (539)
T 1mdb_A          332 MAEGLVNYTRL----DDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIR  390 (539)
T ss_dssp             CTTSCEEECCT----TSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCS
T ss_pred             CCCCcccccCC----CCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccch
Confidence            99965332211    01111233678999976 4799999 67999999999999999999874

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=2.9e-39  Score=267.15  Aligned_cols=218  Identities=19%  Similarity=0.260  Sum_probs=174.0

Q ss_pred             CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccC------CcEEEEecchHHhhhhHHHHHH
Q 039504           17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTN------GDVVLCVLPLFHIYSLNSVLLC   90 (240)
Q Consensus        17 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~------~d~~l~~~p~~~~~g~~~~~~~   90 (240)
                      ......++|+++|+|||||||.||+|.++|.++.........    .+.+.+      +|+++..+|++|.+++...++.
T Consensus       176 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~  251 (480)
T 3t5a_A          176 TFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMS----GYFADTDGIPPPNSALVSWLPFYHDMGLVIGICA  251 (480)
T ss_dssp             CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHH----HHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHH
T ss_pred             CCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHH----HhccccccCCCCCCeEEEeCCCcCccHHHHHHHH
Confidence            345567889999999999999999999999999887766554    223444      8999999999999998767899


Q ss_pred             HhhcCceEEEccCC----CHHHHHHHHHhccceeeeechHHHHHHHhC----CCCCCCCccchhhhhccCCCCCHHHHHH
Q 039504           91 SLRAGAGVLLMQKF----EIGALLELIQRHRVSVAAVVPPLVLALAKN----PMVADYDLSSIRVVLSGAAPLGKELEDA  162 (240)
Q Consensus        91 ~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~----~~~~~~~~~~lr~v~~~G~~~~~~~~~~  162 (240)
                      ++..|+++++.++.    ++..+++.++++++| +.++|+++..++..    .......++++|.+++||+++++++.++
T Consensus       252 ~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~  330 (480)
T 3t5a_A          252 PILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKR  330 (480)
T ss_dssp             HHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHH
T ss_pred             HHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHH
Confidence            99999999998753    899999999999999 88999998887763    2234567889999999999999999999


Q ss_pred             HHHhC-----CCCcccccccccccccchhhccCCCCC--------------------CCCCCCCccccccCCceEEEeeC
Q 039504          163 LRSRV-----PQAILGQGYGMTEAGPVLSMCLGFAKQ--------------------PFPTKSGSCGTVVRNAELKVIDP  217 (240)
Q Consensus       163 ~~~~~-----~~~~i~~~yG~tE~~~~~~~~~~~~~~--------------------~~~~~~~~~G~~~~~~~v~i~d~  217 (240)
                      +++.|     +++++++.||+||++.+++........                    .......++|+|++ ++++|+|+
T Consensus       331 ~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~  409 (480)
T 3t5a_A          331 FADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDS  409 (480)
T ss_dssp             HHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEET
T ss_pred             HHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcC
Confidence            99998     346899999999998776554211100                    00123458999999 99999998


Q ss_pred             CCCCCCCCCCCceEEEeCCCCCC
Q 039504          218 ETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       218 ~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      +++++++.|++|||+|+||++++
T Consensus       410 ~~g~~~~~g~~GEl~v~g~~v~~  432 (480)
T 3t5a_A          410 DTCIECPDGTVGEIWVHGDNVAN  432 (480)
T ss_dssp             TTTEECCTTBCEEEEEESTTSCC
T ss_pred             CCCcCCCCCCEEEEEEeCCcccc
Confidence            88999999999999999999975

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=3.3e-38  Score=269.45  Aligned_cols=232  Identities=21%  Similarity=0.290  Sum_probs=188.2

Q ss_pred             chhhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhh
Q 039504            4 HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS   83 (240)
Q Consensus         4 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g   83 (240)
                      .|+++.+......++..++++|+++|+|||||||.||+|.++|.++..........   .+++.++|++++..|++|+.+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~g  318 (663)
T 1ry2_A          242 DWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRY---TFDTHQEDVFFTAGDIGWITG  318 (663)
T ss_dssp             EHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHH---HSCCCSSCEEEECSCTTSHHH
T ss_pred             cHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHH---hcCCCCCcEEEEcCCcHHhhh
Confidence            35555554443344556778999999999999999999999999987665432211   346789999999999999999


Q ss_pred             hHHHHHHHhhcCceEEEccC----CCHHHHHHHHHhccceeeeechHHHHHHHhCCCC--CCCCccchhhhhccCCCCCH
Q 039504           84 LNSVLLCSLRAGAGVLLMQK----FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV--ADYDLSSIRVVLSGAAPLGK  157 (240)
Q Consensus        84 ~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~lr~v~~~G~~~~~  157 (240)
                      ....++.++..|+++++.++    .++..+++.|+++++|++.++|++++.|.+....  ...+++++|.++++||++++
T Consensus       319 ~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~  398 (663)
T 1ry2_A          319 HTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAA  398 (663)
T ss_dssp             HHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCH
T ss_pred             hHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCH
Confidence            86578899999999998764    6899999999999999999999999999887542  34567899999999999999


Q ss_pred             HHHHHHHHhCC--CCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCC-CCCceEEEe
Q 039504          158 ELEDALRSRVP--QAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPH-NQPGEICIR  234 (240)
Q Consensus       158 ~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~-g~~Gel~v~  234 (240)
                      ++++++.+.++  ++++++.||+||++..+......  .......+++|+|+++++++|+|++++++++. |+.|||+|+
T Consensus       399 ~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~  476 (663)
T 1ry2_A          399 EVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAG--GVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVK  476 (663)
T ss_dssp             HHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTT--TCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEES
T ss_pred             HHHHHHHHHhCCCCceEEEeECCccccCeeeccCCC--CCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEe
Confidence            99999999883  28999999999998665543110  11234568999999999999999658999998 999999999


Q ss_pred             CC--CCCC
Q 039504          235 GP--QIMK  240 (240)
Q Consensus       235 ~~--~~~~  240 (240)
                      ||  ++++
T Consensus       477 g~~p~~~~  484 (663)
T 1ry2_A          477 AAWPSFAR  484 (663)
T ss_dssp             SCCTTSCC
T ss_pred             cCCCchhc
Confidence            94  6653

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=1.7e-38  Score=266.13  Aligned_cols=212  Identities=25%  Similarity=0.347  Sum_probs=182.3

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHH-HHHHHhhcCce
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNS-VLLCSLRAGAG   97 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~l~~G~~   97 (240)
                      ....++|+++++|||||||.||+|.++|.++.........    .+++.++|++++.+|++|.+++.. .++.++..|++
T Consensus       186 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~  261 (544)
T 3o83_A          186 SSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAE----ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGC  261 (544)
T ss_dssp             CCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCE
T ss_pred             ccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHH----HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCE
Confidence            4567899999999999999999999999999988877666    456899999999999999988863 47889999999


Q ss_pred             EEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccc
Q 039504           98 VLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG  177 (240)
Q Consensus        98 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  177 (240)
                      +++.+.+++..+++.++++++|++.++|++++.+.+........++++|.+++||+++++++.+++++.+ ++++++.||
T Consensus       262 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~YG  340 (544)
T 3o83_A          262 VVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFG  340 (544)
T ss_dssp             EEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEEEE
T ss_pred             EEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEeeec
Confidence            9999999999999999999999999999999999887666566778999999999999999999999998 899999999


Q ss_pred             ccccccchhhccCCCCCCCCCCCCcccccc-CCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          178 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVV-RNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       178 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      +||++..+...    .........++|+|+ ++++++|+| +++++++.|+.|||+|+||.+++
T Consensus       341 ~TE~~~~~~~~----~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~  399 (544)
T 3o83_A          341 MAEGLVNYTRL----DDSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFC  399 (544)
T ss_dssp             CTTSCEEECCT----TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCS
T ss_pred             cccccceeecC----CCchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcch
Confidence            99987543321    111112335789996 899999999 78999999999999999999874

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=100.00  E-value=1.8e-38  Score=254.11  Aligned_cols=204  Identities=19%  Similarity=0.196  Sum_probs=169.1

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecch-HHhhhhHHHHHHHhhcCceE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPL-FHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~   98 (240)
                      .+.++++++++|||||||.||+|.++|.++............ ..++.++|+++..+|+ +|..++. ..+.++..|+ .
T Consensus        87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~-~~~~~~~d~~l~~~p~g~~~~g~~-~~~~~~~~G~-~  163 (369)
T 3hgu_A           87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQ-HRPGRPSGNTLAAIPTGPHIVGAI-NKERALRLGG-M  163 (369)
T ss_dssp             TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTT-TSTTCCCCEEEECSCCTTCHHHHH-HHHHHHHTTS-C
T ss_pred             cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHH-hhCCCCcceEEEecCCCchhhhHH-HHHHHHHcCC-E
Confidence            457889999999999999999999999999888775443222 5578999999999999 8988887 4555688888 6


Q ss_pred             EEccCCCHH-----------------------HHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCC
Q 039504           99 LLMQKFEIG-----------------------ALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPL  155 (240)
Q Consensus        99 v~~~~~~~~-----------------------~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~  155 (240)
                      ++...+++.                       .+++.++++++|++.++|+++..|++........++++|.+++||+++
T Consensus       164 v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l  243 (369)
T 3hgu_A          164 FFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTEL  243 (369)
T ss_dssp             EECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCC
T ss_pred             EECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccC
Confidence            666677887                       888899999999999999999999887443334567899999999999


Q ss_pred             CHHHHHHHH-HhCCCCcccccccccccccchhhccCCCCCCCCCCCCccccc------cCCceEEEeeCCCCCCCCCCCC
Q 039504          156 GKELEDALR-SRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTV------VRNAELKVIDPETGASLPHNQP  228 (240)
Q Consensus       156 ~~~~~~~~~-~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~------~~~~~v~i~d~~~~~~~~~g~~  228 (240)
                      +++++++++ +.||++++++.||+||++.++..+.          ..++|++      .|+++++|+|+++++++|.|+.
T Consensus       244 ~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~----------~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~  313 (369)
T 3hgu_A          244 NLDEIKFIASEILPDCEFSASYGSTSALGVSRSLL----------ITSESQQVIYDSFSPFITYDVVDSITAQTVEYGER  313 (369)
T ss_dssp             CHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECC----------BCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCE
T ss_pred             CHHHHHHHHHHhCCCcEEEcccCchhhhcceeccc----------cccCCCcccccCCCCCeEEEEECCCCCcCCCCCCc
Confidence            999999999 9998899999999999986654331          1147888      9999999999878999999999


Q ss_pred             ceEEEeCC
Q 039504          229 GEICIRGP  236 (240)
Q Consensus       229 Gel~v~~~  236 (240)
                      |||+|++.
T Consensus       314 GEl~vt~l  321 (369)
T 3hgu_A          314 GNVIVTHL  321 (369)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEc
Confidence            99999974

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=9.3e-38  Score=260.52  Aligned_cols=220  Identities=22%  Similarity=0.261  Sum_probs=183.5

Q ss_pred             CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504           17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGA   96 (240)
Q Consensus        17 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~   96 (240)
                      ......++|+++++|||||||.||+|.++|.++...........  .+++.++++++...|++|..++. .++.++..|+
T Consensus       138 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~  214 (521)
T 3l8c_A          138 RTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA--AFDVPKQPQMLAQPPYSFDLSVM-YWAPTLALGG  214 (521)
T ss_dssp             CSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT--TTCCCSSCEEECCSCTTSGGGHH-HHHHHHHTTC
T ss_pred             cCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc--ccCCCCCCeEEecCCccHHHHHH-HHHHHHhcCC
Confidence            34567789999999999999999999999999988776654421  24678899999999999988876 6788899999


Q ss_pred             eEEEccC---CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccc
Q 039504           97 GVLLMQK---FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILG  173 (240)
Q Consensus        97 ~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~  173 (240)
                      ++++.+.   .++..+++.+.+++++++.++|+++..+..........++++|.++++|+++++++.+++.+.|++++++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~  294 (521)
T 3l8c_A          215 TLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKII  294 (521)
T ss_dssp             EEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEE
T ss_pred             EEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEE
Confidence            9998875   4899999999999999999999999999888776677788999999999999999999999999899999


Q ss_pred             ccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          174 QGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       174 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      +.||+||++.++..+.............++|+|.|+++++|+| +++++++.|+.|||+|+||++++
T Consensus       295 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~  360 (521)
T 3l8c_A          295 NAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSK  360 (521)
T ss_dssp             EEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCS
T ss_pred             eCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccCh
Confidence            9999999987665432111111123456799999999999999 67999999999999999999874

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=4.4e-38  Score=262.11  Aligned_cols=223  Identities=26%  Similarity=0.447  Sum_probs=185.1

Q ss_pred             hhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhH
Q 039504            6 TVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLN   85 (240)
Q Consensus         6 ~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~   85 (240)
                      .++........+.....++|+++|+|||||||.||+|.++|.++.........    .+++.++|+++..+|++|..++.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~~  227 (517)
T 3r44_A          152 AERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAS----TIDVRYRDRLLLPLPMFHVAALT  227 (517)
T ss_dssp             HHHHHHCCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHH----HSCCCTTCEEEECSCTTSHHHHH
T ss_pred             HHHhhccCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHH----hcCCCCCCEEEEeCchHHHHHHH
Confidence            33444444444556678899999999999999999999999999988877665    44688999999999999999988


Q ss_pred             HHHHHHhhcCceEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHH
Q 039504           86 SVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRS  165 (240)
Q Consensus        86 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~  165 (240)
                      ..++..+ .|+++++.+.+++..+++.++++++|++.++|++++.|.+........++++|.+++||+++++++.+++.+
T Consensus       228 ~~~~~~~-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~  306 (517)
T 3r44_A          228 TVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAA  306 (517)
T ss_dssp             HHHHHHH-HTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred             HHHHHHh-cCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHh
Confidence            5455555 999999999999999999999999999999999999998876555567789999999999999999999998


Q ss_pred             hCCCCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          166 RVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       166 ~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      .  ++++++.||+||++..+.....   .......+++|+|.++++++|+| +++++++.| .|||+|+||.+++
T Consensus       307 ~--~~~~~~~YG~TE~~~~~~~~~~---~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~  374 (517)
T 3r44_A          307 K--NIEVVQGYALTESCGGGTLLLS---EDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLK  374 (517)
T ss_dssp             T--TCEEEEEEECGGGTTCEEEECG---GGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCS
T ss_pred             c--CCcEEEeecccccccceeecCC---ccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhh
Confidence            6  7899999999999876554321   12234567899999999999999 678999999 8999999999874

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=1.9e-37  Score=257.65  Aligned_cols=208  Identities=23%  Similarity=0.325  Sum_probs=175.7

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccc--cCCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYL--TNGDVVLCVLPLFHIYSLNSVLLCSLRAGA   96 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~   96 (240)
                      ....++|+++++|||||||.||+|.++|+++.........    .+++  .++|++++.+|++|..++...++.++..|+
T Consensus       148 ~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~----~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~  223 (504)
T 1t5h_X          148 PQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST----QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDG  223 (504)
T ss_dssp             CCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHH----TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTC
T ss_pred             CCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHH----hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCc
Confidence            4567899999999999999999999999999888776655    3345  788999999999999998656889999999


Q ss_pred             eEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCC--CCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccc
Q 039504           97 GVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPM--VADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ  174 (240)
Q Consensus        97 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  174 (240)
                      ++++.+.+++..+++.++++++|++.++|++++.|.+...  .....++++|.+++||+++++++.+++++.+ +.++++
T Consensus       224 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~  302 (504)
T 1t5h_X          224 TYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVN  302 (504)
T ss_dssp             EEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEE
T ss_pred             eEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceee
Confidence            9999999999999999999999999999999999987642  2344678999999999999999999999999 688999


Q ss_pred             cccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCC---CCCCCCCCceEEEe-CCCCCC
Q 039504          175 GYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETG---ASLPHNQPGEICIR-GPQIMK  240 (240)
Q Consensus       175 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~---~~~~~g~~Gel~v~-~~~~~~  240 (240)
                      .||+||++ .+....       ....+++|+|.++++++|+|. .+   ++++.|+.|||+|+ ||.+++
T Consensus       303 ~YG~TE~~-~~~~~~-------~~~~~~~g~p~~~~~~~i~~~-~~~~~~~~~~g~~GEl~v~gg~~~~~  363 (504)
T 1t5h_X          303 IYGTTEAM-NSLYMR-------QPKTGTEMAPGFFSEVRIVRI-GGGVDEIVANGEEGELIVAASDSAFV  363 (504)
T ss_dssp             EEEETTTE-EEEEEE-------SCSSSSEEBCCTTCCEEEECT-TSCTTCBCCTTCCEEEEEECCTTSCC
T ss_pred             eecccccc-cccccc-------CCCCCccccCCCCCceeEEec-cCCCCCcCCCCCcceEEEeCCceeec
Confidence            99999993 322221       234578899999999999994 45   89999999999999 888763

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=4.5e-38  Score=266.11  Aligned_cols=218  Identities=22%  Similarity=0.331  Sum_probs=183.4

Q ss_pred             CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504           17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGA   96 (240)
Q Consensus        17 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~   96 (240)
                      .....+++|+++|+|||||||.||+|.++|.++.........    .+++.++|++++.+|++|..|+...++.++..|+
T Consensus       160 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~  235 (590)
T 3kxw_A          160 QPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT----SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGI  235 (590)
T ss_dssp             CCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTC
T ss_pred             CCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH----hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCc
Confidence            345677899999999999999999999999999998877766    4567899999999999999999866889999999


Q ss_pred             eEEEccCC----CHHHHHHHHHhccceeeeechHHHHHHHhCCC---CCCCCccchhhhhccCCCCCHHHHHHHHHhCC-
Q 039504           97 GVLLMQKF----EIGALLELIQRHRVSVAAVVPPLVLALAKNPM---VADYDLSSIRVVLSGAAPLGKELEDALRSRVP-  168 (240)
Q Consensus        97 ~~v~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~---~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~-  168 (240)
                      ++++.+++    ++..+++.++++++|++.++|++++.+.+...   .....++++|.+++||+++++++.+++.+.|+ 
T Consensus       236 ~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~  315 (590)
T 3kxw_A          236 QAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKE  315 (590)
T ss_dssp             EEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGG
T ss_pred             eEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHH
Confidence            99998765    89999999999999999999999998877533   23456789999999999999999999999873 


Q ss_pred             ----CCcccccccccccccchhhccCCCC----------------------CCCCCCCCccccccCCceEEEeeCCCCCC
Q 039504          169 ----QAILGQGYGMTEAGPVLSMCLGFAK----------------------QPFPTKSGSCGTVVRNAELKVIDPETGAS  222 (240)
Q Consensus       169 ----~~~i~~~yG~tE~~~~~~~~~~~~~----------------------~~~~~~~~~~G~~~~~~~v~i~d~~~~~~  222 (240)
                          +.++++.||+||++.+++.......                      ........++|+|.++  ++|+|++++++
T Consensus       316 ~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~  393 (590)
T 3kxw_A          316 FGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIP  393 (590)
T ss_dssp             GTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCB
T ss_pred             cCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcC
Confidence                4579999999999877654321100                      1112234578999998  88999888999


Q ss_pred             CCCCCCceEEEeCCCCCC
Q 039504          223 LPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       223 ~~~g~~Gel~v~~~~~~~  240 (240)
                      ++.|++|||+|+||++++
T Consensus       394 ~~~g~~GEl~v~g~~v~~  411 (590)
T 3kxw_A          394 CDFDQVGEIWVQSNSVAK  411 (590)
T ss_dssp             CCTTBCEEEEEESTTSCC
T ss_pred             CCCCCEEEEEEeCCcccc
Confidence            999999999999999874

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=6.3e-37  Score=259.60  Aligned_cols=212  Identities=21%  Similarity=0.226  Sum_probs=178.1

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ....++|+++|+|||||||.||+|.++|.++.+.+.. ..    .+++.++|+++..+|++|..++. .++.++..|+++
T Consensus       159 ~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~----~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~  232 (620)
T 4dg8_A          159 PCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QS----FLAFAPQMRFLVNSPLSFDAATL-EIWGALLNGGCC  232 (620)
T ss_dssp             CCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CG----GGTTCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEE
T ss_pred             CCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HH----hhCCCCCCEEEEECccCHHHHHH-HHHHHHhcCCEE
Confidence            3456899999999999999999999999998776543 22    45678999999999999999987 588899999999


Q ss_pred             EEcc--CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccc
Q 039504           99 LLMQ--KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGY  176 (240)
Q Consensus        99 v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  176 (240)
                      ++.+  .+++..+++.++++++|++.++|++++.|.+..   ...++++|.+++|||++++++.+++.+.+++++++|.|
T Consensus       233 v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y  309 (620)
T 4dg8_A          233 VLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGY  309 (620)
T ss_dssp             EECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred             EeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeE
Confidence            9864  589999999999999999999999999998743   23577899999999999999999998888889999999


Q ss_pred             cccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          177 GMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       177 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      |+||++.+++..... .........++|+|+++++++|+|++....+|.|++|||+|+||++++
T Consensus       310 G~TE~~~~~~~~~~~-~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~  372 (620)
T 4dg8_A          310 GPTENTTFTCCHVVT-DDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQ  372 (620)
T ss_dssp             CCGGGCSCSEEEECC-TGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCS
T ss_pred             chhhhhhheEEEecc-ccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEecccccc
Confidence            999998765543221 122234557899999999999999554444899999999999999875

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=8.3e-37  Score=257.19  Aligned_cols=212  Identities=23%  Similarity=0.286  Sum_probs=179.2

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      .....++|+++|+|||||||.||+|.++|.++....... .    ..++.++|+++..+|++|..+.. .++.++..|++
T Consensus       208 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~----~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~  281 (570)
T 4gr5_A          208 ATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-D----YAGFGPDEVFLQCSPVSWDAFGL-ELFGALLFGAR  281 (570)
T ss_dssp             CCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-C----SSCCSTTCEEEECSCTTSSTHHH-HHHHHHTTTCE
T ss_pred             CCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-h----hcCCCCCCEEEEecCccHHHHHH-HHHHHHhcCCE
Confidence            345678999999999999999999999999987655431 2    45788999999999998876655 67889999999


Q ss_pred             EEEcc--CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccc
Q 039504           98 VLLMQ--KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG  175 (240)
Q Consensus        98 ~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  175 (240)
                      +++.+  .+++..+++.++++++|++.++|++++.|.+...   ..++++|.+++||++++.++.+++.+.++++++++.
T Consensus       282 ~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~  358 (570)
T 4gr5_A          282 CVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNG  358 (570)
T ss_dssp             EEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEE
T ss_pred             EEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEe
Confidence            99876  4799999999999999999999999999987643   357889999999999999999999999988999999


Q ss_pred             ccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          176 YGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       176 yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ||+||++.++....... ........++|+|+++++++|+| +++++++.|++|||+|+||.+++
T Consensus       359 YG~TE~~~~~~~~~~~~-~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~  421 (570)
T 4gr5_A          359 YGPAESMGFTTHHAVVA-GDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAH  421 (570)
T ss_dssp             ECCGGGCSCSEEEECCG-GGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCC
T ss_pred             echhhheeeeeeeeecc-cccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccch
Confidence            99999987655432211 11233456799999999999999 67999999999999999999874

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=5.8e-37  Score=256.66  Aligned_cols=216  Identities=29%  Similarity=0.451  Sum_probs=176.1

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ...+++|+++|+|||||||.||+|.++|+++.........  ...+++.++|++++.+|++|.+++. ..+.++..|+++
T Consensus       171 ~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~--~~~~~~~~~d~~l~~~p~~h~~~~~-~~~~~l~~G~~~  247 (541)
T 1v25_A          171 VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASL--VDGTALSEKDVVLPVVPMFHVNAWC-LPYAATLVGAKQ  247 (541)
T ss_dssp             CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTS--TTTTCCCTTCEEEECSCTTSHHHHT-HHHHHHHHTCEE
T ss_pred             ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhh--cccccCCCCCEEEEeccchhhhHHH-HHHHHHhcCceE
Confidence            3456789999999999999999999999998776654211  1134678999999999999999986 567888999999


Q ss_pred             EEccC-CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccc
Q 039504           99 LLMQK-FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG  177 (240)
Q Consensus        99 v~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  177 (240)
                      ++.+. +++..+++.++++++|++.++|++++.|.+........++++|.+++||+++++++.+++ +.+ ++++++.||
T Consensus       248 v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~YG  325 (541)
T 1v25_A          248 VLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQGYG  325 (541)
T ss_dssp             EECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEEEE
T ss_pred             EeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCceeeccc
Confidence            98864 799999999999999999999999999987655445567899999999999999999999 667 899999999


Q ss_pred             ccccccchhhccCCCC-CCC-----CCCCCccccccCCceEEEeeCCCCCCCCC-C-CCceEEEeCCCCCC
Q 039504          178 MTEAGPVLSMCLGFAK-QPF-----PTKSGSCGTVVRNAELKVIDPETGASLPH-N-QPGEICIRGPQIMK  240 (240)
Q Consensus       178 ~tE~~~~~~~~~~~~~-~~~-----~~~~~~~G~~~~~~~v~i~d~~~~~~~~~-g-~~Gel~v~~~~~~~  240 (240)
                      +||++.++..+..... ...     .....++|+|+|+++++|+| +++++++. | +.|||+|+||.+++
T Consensus       326 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~  395 (541)
T 1v25_A          326 LTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITG  395 (541)
T ss_dssp             CGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBS
T ss_pred             ccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhc
Confidence            9999876654321100 000     01246899999999999999 56888985 3 68999999999874

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=3.4e-37  Score=256.47  Aligned_cols=207  Identities=26%  Similarity=0.422  Sum_probs=173.2

Q ss_pred             CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504           17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGA   96 (240)
Q Consensus        17 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~   96 (240)
                      ......++|+++|+|||||||.||+|.++|.++.........    .+++.++|+++..+|++|.+++...+...+..|.
T Consensus       153 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~  228 (509)
T 3ivr_A          153 SAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVD----AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGA  228 (509)
T ss_dssp             CCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCE
T ss_pred             CcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHH----hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCc
Confidence            345677899999999999999999999999999988877666    4468999999999999999999854444555555


Q ss_pred             eEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccc
Q 039504           97 GVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGY  176 (240)
Q Consensus        97 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  176 (240)
                      .++. ..+++..+++.++++++|++.++|+++..+.+..  ....++++|.++.+|++   ++.+++.+.++++++++.|
T Consensus       229 ~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~Y  302 (509)
T 3ivr_A          229 SVIA-AKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATF  302 (509)
T ss_dssp             EEEC-SSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEE
T ss_pred             EEEe-cccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEccc
Confidence            5554 4899999999999999999999999999998876  34467789999999987   8899999999899999999


Q ss_pred             cccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          177 GMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       177 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      |+||++.++..+..      ......+|+|.++++++|+| +++++++.|+.|||+|+||++++
T Consensus       303 G~TE~~~~~~~~~~------~~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~  359 (509)
T 3ivr_A          303 GQSETSGLSTFAPY------RDRPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFK  359 (509)
T ss_dssp             EEGGGTEEEEEEEG------GGSTTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCC
T ss_pred             CccccccccccCcc------ccCCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccc
Confidence            99999877655421      12234589999999999999 55999999999999999999874

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=2.1e-37  Score=257.24  Aligned_cols=211  Identities=27%  Similarity=0.421  Sum_probs=178.0

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      ....+++|+++++|||||||.||+|.++|.++.........    .+++.++|+++..+|++|..++...++.++..|++
T Consensus       149 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~  224 (505)
T 3nyq_A          149 EDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALAD----AWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGS  224 (505)
T ss_dssp             CCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHH----HHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCE
T ss_pred             CCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHH----HhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCE
Confidence            34567889999999999999999999999999988877665    44678999999999999999987678899999999


Q ss_pred             EEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCC---CCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccc
Q 039504           98 VLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVA---DYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ  174 (240)
Q Consensus        98 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~---~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  174 (240)
                      +++.+++++..+++.+ ++++|++.++|+++..+.+.....   ...++++|.+++||+++++++.+++.+.+ ++++++
T Consensus       225 ~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~  302 (505)
T 3nyq_A          225 VRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIE  302 (505)
T ss_dssp             EEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEE
T ss_pred             EEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeec
Confidence            9999999999999999 889999999999999998743322   23456789999999999999999999998 889999


Q ss_pred             cccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCC---CCCceEEEeCCCCCC
Q 039504          175 GYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPH---NQPGEICIRGPQIMK  240 (240)
Q Consensus       175 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~---g~~Gel~v~~~~~~~  240 (240)
                      .||+||++..+...     ........++|+|.++++++|+| +++++++.   |++|||+|+||++++
T Consensus       303 ~YG~TE~~~~~~~~-----~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~  365 (505)
T 3nyq_A          303 RYGMTETLMNTSVR-----ADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFT  365 (505)
T ss_dssp             EEEETTTEEEEECC-----TTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCC
T ss_pred             ccchhhcccccccC-----CCCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhh
Confidence            99999998665443     22234567899999999999999 56888876   899999999999874

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=7.3e-37  Score=259.66  Aligned_cols=223  Identities=26%  Similarity=0.364  Sum_probs=184.1

Q ss_pred             HhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHH-
Q 039504            8 LSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNS-   86 (240)
Q Consensus         8 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-   86 (240)
                      ...............++|+++|+|||||||.||+|.++|.++...+.....    .+++.++|++++.+|++|.+++.. 
T Consensus       168 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~----~~~~~~~~~~l~~~p~~~~~~~~~~  243 (617)
T 3rg2_A          168 AINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE----ICQFTQQTRYLCAIPAAHNYAMSSP  243 (617)
T ss_dssp             HHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH----HHTCCTTCEEEECSCTTSHHHHHSS
T ss_pred             hhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHH----hcCCCCcceEEEeccchhhhhhhHH
Confidence            333333333445567899999999999999999999999999988877665    456789999999999999888763 


Q ss_pred             HHHHHhhcCceEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCC--CCCccchhhhhccCCCCCHHHHHHHH
Q 039504           87 VLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVA--DYDLSSIRVVLSGAAPLGKELEDALR  164 (240)
Q Consensus        87 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~--~~~~~~lr~v~~~G~~~~~~~~~~~~  164 (240)
                      .++.++..|+++++.+..++..+++.++++++|++.++|+++..+.+.....  ...++++|.+++|||++++++.+++.
T Consensus       244 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~  323 (617)
T 3rg2_A          244 GSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIP  323 (617)
T ss_dssp             HHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHH
T ss_pred             HHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHH
Confidence            5788999999999998899999999999999999999999999887743322  23678999999999999999999999


Q ss_pred             HhCCCCcccccccccccccchhhccCCCCCCCCCCCCcccccc-CCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          165 SRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVV-RNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       165 ~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      +.+ +++++|.||+||++..+...    .........++|+|. ++.++.|+| ++++++|.|++|||+|+||++++
T Consensus       324 ~~~-~~~~~~~YG~tE~~~~~~~~----~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~  394 (617)
T 3rg2_A          324 AEI-GCQLQQVFGMAEGLVNYTRL----DDSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFR  394 (617)
T ss_dssp             HHT-CSEEEEEEEETTEEEEECCT----TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCS
T ss_pred             HHh-CCcEEEEeccCcceeecccC----CCcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccc
Confidence            998 89999999999987543322    011111234789997 788999999 77999999999999999999874

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=1e-36  Score=248.99  Aligned_cols=210  Identities=19%  Similarity=0.162  Sum_probs=172.8

Q ss_pred             CCCCC-CCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           19 VAIEP-DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        19 ~~~~~-~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      ..+.+ +|+++++|||||||.||+|.++|.++..........+. ..++.++|+++..+|+.|..+....++.++..|++
T Consensus        80 ~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~  158 (436)
T 3qov_A           80 VAGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLY-MVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL  158 (436)
T ss_dssp             CCSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHH-HTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred             ccCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHH-HcCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence            34556 88999999999999999999999998776554422111 23678999999999987766666577889999999


Q ss_pred             EEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCC--ccchhhhhccCCCCCHHHHHHHHHhCCCCccccc
Q 039504           98 VLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYD--LSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG  175 (240)
Q Consensus        98 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~--~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  175 (240)
                      +++.+.++++.+++.++++++|++.++|+++..|.+.....+..  ++++|.+++||+++++++++++++.| ++++++.
T Consensus       159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~  237 (436)
T 3qov_A          159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNS  237 (436)
T ss_dssp             EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEE
T ss_pred             EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEec
Confidence            99998899999999999999999999999999998765443333  67899999999999999999999999 8999999


Q ss_pred             ccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCC
Q 039504          176 YGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQ  237 (240)
Q Consensus       176 yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~  237 (240)
                      ||+||+++.+.....       ......+.+.+++.++|+|+++++++++|+.|||+|+|+.
T Consensus       238 YG~TE~~~~~~~~~~-------~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~  292 (436)
T 3qov_A          238 FGMTEMNGPGVAFEC-------QEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD  292 (436)
T ss_dssp             EEEGGGTEEEEEEEC-------TTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESS
T ss_pred             CcchhhcCCeeEEec-------CCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccC
Confidence            999999544222211       1123367777899999999999999999999999999854

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=7.6e-36  Score=250.79  Aligned_cols=204  Identities=21%  Similarity=0.313  Sum_probs=168.7

Q ss_pred             CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      ...++|+++++|||||||.||+|.++|+++.........    .+++.++|+++..+|++|..++. .++.++..|++++
T Consensus       178 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v  252 (563)
T 1amu_A          178 PSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFEN----SLNVTEKDRIGQFASISFDASVW-EMFMALLTGASLY  252 (563)
T ss_dssp             CCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHH----TSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred             CCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHH----hcCCCCCCEEEEeCCccHHHHHH-HHHHHHHCCCEEE
Confidence            456789999999999999999999999999887766655    45678999999999999998886 6778999999999


Q ss_pred             EccC---CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccc
Q 039504          100 LMQK---FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGY  176 (240)
Q Consensus       100 ~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  176 (240)
                      +.+.   +++..+++.++++++|++.++|+++..+...      .++++|.+++||+++++++.+++++.   +++++.|
T Consensus       253 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~Y  323 (563)
T 1amu_A          253 IILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VTYINAY  323 (563)
T ss_dssp             ECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEE
T ss_pred             EcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---CeEEEEE
Confidence            8865   7899999999999999999999998877542      35789999999999999999999873   6899999


Q ss_pred             cccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          177 GMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       177 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      |+||++..+......  ........++|+|+|+++++|+| +++++++.|+.|||+|+||++++
T Consensus       324 G~TE~~~~~~~~~~~--~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~  384 (563)
T 1amu_A          324 GPTETTICATTWVAT--KETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLAR  384 (563)
T ss_dssp             CCGGGSSCSEEEECC--SSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCC
T ss_pred             CcCHHhHhheeeecc--cccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhCh
Confidence            999998665543211  11123456899999999999999 67999999999999999999874

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=6.8e-36  Score=248.18  Aligned_cols=203  Identities=25%  Similarity=0.413  Sum_probs=174.3

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV   98 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~   98 (240)
                      ...+++|+++++|||||||.||+|.++|.++.........    .+++.++|++++.+|++|.+++. .++.++..|+++
T Consensus       158 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~~  232 (501)
T 3ipl_A          158 TSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE----SLGFDRDTNWLSVLPIYHISGLS-VLLRAVIEGFTV  232 (501)
T ss_dssp             CCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH----HTCCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEE
T ss_pred             cCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH----hhCCCccCEEEEeCcHHHHHHHH-HHHHHHHcCceE
Confidence            3467899999999999999999999999999888877665    44678999999999999999997 578899999999


Q ss_pred             EEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccc
Q 039504           99 LLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM  178 (240)
Q Consensus        99 v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  178 (240)
                      ++.++++++.+++.++++++|++.++|++++.|.+.......   ++|.+++||+++++++.+++.+ + ++++++.||+
T Consensus       233 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---~lr~i~~gG~~l~~~~~~~~~~-~-~~~~~~~YG~  307 (501)
T 3ipl_A          233 RIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPY---NLQKILLGGAKLSATMIETALQ-Y-NLPIYNSFGM  307 (501)
T ss_dssp             EECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCT---TCCEEEECSSCCCHHHHHHHHH-T-TCCEEEEEEE
T ss_pred             EeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcC---cccEEEEeCCCCCHHHHHHHHH-h-CCCEeccccc
Confidence            999999999999999999999999999999999887654332   7899999999999999999988 4 8899999999


Q ss_pred             cccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       179 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ||++..+..+..   ........++|+|.++++++|+|++      .|+.|||+|+|+.+++
T Consensus       308 TE~~~~~~~~~~---~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~  360 (501)
T 3ipl_A          308 TETCSQFLTATP---EMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMN  360 (501)
T ss_dssp             GGGTEEEEEECH---HHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCS
T ss_pred             cccccceeecCc---cccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhh
Confidence            999865444311   1112356789999999999999954      5678999999999874

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=2.1e-35  Score=241.38  Aligned_cols=210  Identities=24%  Similarity=0.237  Sum_probs=168.8

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecch-HHhhhhHHHHHHHhhcCc
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPL-FHIYSLNSVLLCSLRAGA   96 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~~l~~G~   96 (240)
                      ...+.++++++++|||||||.||+|.++|.++..........+. .++++++|+++..+|+ +|..++. ..+.++..|+
T Consensus        84 ~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~G~  161 (437)
T 2y27_A           84 MFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIR-AAGARRGDKVHVSYGYGLFTGGLG-AHYGAERAGL  161 (437)
T ss_dssp             TCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHH-HTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHTTC
T ss_pred             cccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH-HcCCCCCCEEEEcccccccccchH-HHHHHHHcCC
Confidence            34567789999999999999999999999998766543322110 2467899999999998 5666665 5788899999


Q ss_pred             eEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCC--ccchhhhhccCCCCCHHHHHHHHHhCCCCcccc
Q 039504           97 GVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYD--LSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ  174 (240)
Q Consensus        97 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~--~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  174 (240)
                      ++++.+.++++.+++.++++++|++.++|+++..|.+.....+..  ++++|.+++||+++++++++++++.| ++++++
T Consensus       162 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~  240 (437)
T 2y27_A          162 TVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVD  240 (437)
T ss_dssp             EEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEE
T ss_pred             EEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEe
Confidence            999888889999999999999999999999999998764433332  46899999999999999999999998 899999


Q ss_pred             cccccccccc-hhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCC
Q 039504          175 GYGMTEAGPV-LSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQ  237 (240)
Q Consensus       175 ~yG~tE~~~~-~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~  237 (240)
                      .||+||+++. +....    ..   .....+.+.+++.++|+|++++++++.|+.|||+|+|..
T Consensus       241 ~YG~TE~~g~~~~~~~----~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t  297 (437)
T 2y27_A          241 IYGLSEVMGPGVASEC----VE---TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLT  297 (437)
T ss_dssp             EEEETTTTEEEEEECC----TT---TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS
T ss_pred             cCCchhhcCCeeEEec----CC---CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecCC
Confidence            9999998432 22211    10   111356677899999999888999999999999999843

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=3.1e-35  Score=240.72  Aligned_cols=209  Identities=22%  Similarity=0.231  Sum_probs=167.5

Q ss_pred             CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecch-HHhhhhHHHHHHHhhcCce
Q 039504           19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPL-FHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~   97 (240)
                      ..+.++++++++|||||||.||+|.++|.++..........+. .+++.++|+++..+|+ +|..++. ..+.++..|++
T Consensus        87 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~-~~~~~~~d~~l~~~~~~~~~~~~~-~~~~~~~~G~~  164 (443)
T 2y4o_A           87 FAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIR-AAGGRPGDTLHNAFGYGLFTGGLG-IHYGAERLGCM  164 (443)
T ss_dssp             CSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHH-HTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHHTCE
T ss_pred             cCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH-HcCCCCCCEEEEeccCcccccHHH-HHHHHHHcCCE
Confidence            4457789999999999999999999999998765543322110 2467899999999998 4555554 67888999999


Q ss_pred             EEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCC--ccchhhhhccCCCCCHHHHHHHHHhCCCCccccc
Q 039504           98 VLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYD--LSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG  175 (240)
Q Consensus        98 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~--~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  175 (240)
                      +++.+.++++.+++.++++++|++.++|+++..|++.....+..  ++++|.+++||+++++++++++++.| ++++++.
T Consensus       165 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~  243 (443)
T 2y4o_A          165 VVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDI  243 (443)
T ss_dssp             EECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEE
T ss_pred             EEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEec
Confidence            99988889999999999999999999999999998764433332  47899999999999999999999999 8999999


Q ss_pred             ccccccccc-hhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCC
Q 039504          176 YGMTEAGPV-LSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQ  237 (240)
Q Consensus       176 yG~tE~~~~-~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~  237 (240)
                      ||+||+++. +....    .   ......+.+.+++.++|+|+++++++++|+.|||+|+|..
T Consensus       244 YG~TE~~g~~~~~~~----~---~~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t  299 (443)
T 2y4o_A          244 YGLSEVMGPGVACEC----V---ETKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLT  299 (443)
T ss_dssp             EEETTTTEEEEEEEC----T---TTCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS
T ss_pred             cCchhhcCCeEEecc----C---CCCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCC
Confidence            999997432 22211    1   0111245567899999999888999999999999999843

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=1.5e-34  Score=262.66  Aligned_cols=212  Identities=24%  Similarity=0.313  Sum_probs=178.6

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      .....|+|+++|+|||||||.||||.++|+++.+. .....    .+++.++|+++...|+.|..+.+ .++.++..|++
T Consensus       601 ~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~----~~~~~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~  674 (1304)
T 2vsq_A          601 ATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVD----YMAFSDQDTFLSVSNYAFDAFTF-DFYASMLNAAR  674 (1304)
T ss_dssp             CCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCC----SSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCE
T ss_pred             CCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHH----hcCCCCCCEEEEECCccHHHHHH-HHHHHHHcCCE
Confidence            34567899999999999999999999999998765 33222    55788999999999998887776 67889999999


Q ss_pred             EEEccC---CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccc
Q 039504           98 VLLMQK---FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ  174 (240)
Q Consensus        98 ~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  174 (240)
                      +++.+.   .++..+.+.++++++|++.++|++++.+.+..   ...++++|.+++|||++++++.+++.+.+++.+++|
T Consensus       675 l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n  751 (1304)
T 2vsq_A          675 LIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLIN  751 (1304)
T ss_dssp             EEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEE
T ss_pred             EEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEE
Confidence            999864   79999999999999999999999999998653   224578999999999999999999999887789999


Q ss_pred             cccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          175 GYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       175 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      .||+||++..+....... ........++|+|+++++++|+| ++++++|.|++|||+|+|++|++
T Consensus       752 ~YG~TE~~~~~~~~~~~~-~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~  815 (1304)
T 2vsq_A          752 CYGPTEGTVFATAHVVHD-LPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSK  815 (1304)
T ss_dssp             EECCGGGSSCSEEEECCC-CCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCC
T ss_pred             eEChhHHhHHheeeeccC-ccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCc
Confidence            999999987665442211 11223456899999999999999 66999999999999999999975

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=1.7e-34  Score=242.91  Aligned_cols=213  Identities=18%  Similarity=0.184  Sum_probs=171.9

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcC----CCCCccccCCcEEEEecchHHhhhhHHHHHHHhh
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDG----ENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLR   93 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~----~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~   93 (240)
                      .....++++++|+|||||||.||+|.++|.++......+...    ....+.+...+++++..|+.|..++. .++.++.
T Consensus       169 ~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~  247 (562)
T 3ite_A          169 LNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIG-EMFLAWR  247 (562)
T ss_dssp             CCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHH-HHHHHHH
T ss_pred             ccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHH-HHHHHHh
Confidence            344567889999999999999999999999998776553321    11123467789999999998887776 5678889


Q ss_pred             cCceEEEccCCC-HHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcc
Q 039504           94 AGAGVLLMQKFE-IGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAIL  172 (240)
Q Consensus        94 ~G~~~v~~~~~~-~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i  172 (240)
                      .|+++++.+.+. +..+++.++++++|++.++|++++.+...    ...++++|.+++||+++++++.+++++.+ ++++
T Consensus       248 ~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~  322 (562)
T 3ite_A          248 FGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSSSD-RVAL  322 (562)
T ss_dssp             TTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTTCS-SCEE
T ss_pred             cccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhhCC-CcEE
Confidence            999998876543 57788999999999999999999887443    34677899999999999999999999877 8999


Q ss_pred             cccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          173 GQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       173 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      ++.||+||++..+.....    .......++|+|.++++++|+|++++++++.|+.|||+|+||.+++
T Consensus       323 ~~~YG~TE~~~~~~~~~~----~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~  386 (562)
T 3ite_A          323 VNVYGPTEVTIGCSAGRI----LPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVAN  386 (562)
T ss_dssp             EEEECCGGGCSCSEEEEC----CTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCC
T ss_pred             EEeeccchheeeeeeeee----cCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccch
Confidence            999999999876655421    1233457899999999999999888999999999999999999874

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=4.6e-33  Score=221.52  Aligned_cols=188  Identities=21%  Similarity=0.230  Sum_probs=157.2

Q ss_pred             CCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC
Q 039504           24 DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK  103 (240)
Q Consensus        24 ~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~  103 (240)
                      +|+++|+|||||||.||+|.++|+++.........    .++++++|++++.+|++|++|+. .++.++..|+++++.++
T Consensus        37 d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~gl~-~~~~~l~~g~~~~~~~~  111 (358)
T 4gs5_A           37 GAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGK----ALSLGPGTRALVCLNVGYIAGLM-MLVRGMELDWELTVTEP  111 (358)
T ss_dssp             TCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEEECC
T ss_pred             CCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHH----HhCCCCCCEEEEECChHHHHHHH-HHHHHHHhCcEEEecCc
Confidence            68999999999999999999999999988877666    45689999999999999999987 56777888888877654


Q ss_pred             -CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccccccc
Q 039504          104 -FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAG  182 (240)
Q Consensus       104 -~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~  182 (240)
                       .+   .++.++++++|++.++|++++.|++.... ...++++|.+++||+++++++.+++++.  ++++++.||+||++
T Consensus       112 ~~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~  185 (358)
T 4gs5_A          112 TAN---PLAGLDHADFDFVAMVPMQLQSILENSAT-SGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETV  185 (358)
T ss_dssp             CSC---TTTTCSSCCCSEEEECHHHHHHHHHCTTT-GGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGS
T ss_pred             ccc---HHHHHHHhCCeEEEcChHHHHHhhccccc-cccCCcceEEEEcccCCCchheeccccc--CceEEecccccccc
Confidence             33   36678899999999999999999987654 4478899999999999999999999874  78999999999998


Q ss_pred             cchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCC
Q 039504          183 PVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQI  238 (240)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~  238 (240)
                      ..+.....     .....+.+|.+.|++.+.+.+           .|||+++|+.+
T Consensus       186 ~~~~~~~~-----~~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~  225 (358)
T 4gs5_A          186 SHVALKAL-----NGPEASELYVFLPGIQYGVDE-----------RGCLHISGAVT  225 (358)
T ss_dssp             SEEEEEEC-----SSTTCCSCEEECTTCEEEECT-----------TSEEEEESGGG
T ss_pred             ceeecccc-----cccccceeeccCCCeEEEecC-----------cCceEEecccc
Confidence            76665422     233457889999999887744           39999998753

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=97.30  E-value=0.00033  Score=58.48  Aligned_cols=31  Identities=29%  Similarity=0.287  Sum_probs=25.5

Q ss_pred             CCCCCcEEEecCCCCC-CCCceeeeehHHHHH
Q 039504           21 IEPDDPVALPFSSGTT-GLPKGVVLTHKSLIT   51 (240)
Q Consensus        21 ~~~~~~~~i~~TSGtT-G~pk~v~~s~~~l~~   51 (240)
                      ..++.+.+...||||| |.+|.+++|...+..
T Consensus        90 L~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~  121 (581)
T 4eql_A           90 ISARTITGFLLSSGTSGGAQKMMPWNNKYLDN  121 (581)
T ss_dssp             TCSSCCCEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred             cCCCCCCeEEeCCCCCCCCccccccCHHHHHH
Confidence            4566667888899999 679999999998755

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=97.13  E-value=0.0003  Score=58.94  Aligned_cols=32  Identities=22%  Similarity=0.141  Sum_probs=26.5

Q ss_pred             CCCCCCcEEEecCCCCC-CCCceeeeehHHHHH
Q 039504           20 AIEPDDPVALPFSSGTT-GLPKGVVLTHKSLIT   51 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtT-G~pk~v~~s~~~l~~   51 (240)
                      .+.++.+.+...||||| |.||.+++|...+..
T Consensus        95 il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~  127 (609)
T 4b2g_A           95 ILSAHPISEFLTSSGTSAGERKLMPTIQEELDR  127 (609)
T ss_dssp             SSCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred             ccCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence            34566777899999999 789999999998755

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=93.11  E-value=0.43  Score=39.58  Aligned_cols=98  Identities=16%  Similarity=0.156  Sum_probs=71.8

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .|+.++.+....|       -.+|...+......+...+. ..++.++|++..+++....  +...+++++..|+..+..
T Consensus        35 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~--~~~~~la~~~~Gav~vpl  104 (536)
T 3ni2_A           35 HSSKPCLINGANG-------DVYTYADVELTARRVASGLN-KIGIQQGDVIMLFLPSSPE--FVLAFLGASHRGAIITAA  104 (536)
T ss_dssp             STTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEEC
T ss_pred             CCCceEEEECCCC-------CEEEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHH--HHHHHHHHHHhCCEEecc
Confidence            3566666543222       35788888887766665443 3588999999998886543  334678999999998887


Q ss_pred             cC-CCHHHHHHHHHhccceeeeechHHHH
Q 039504          102 QK-FEIGALLELIQRHRVSVAAVVPPLVL  129 (240)
Q Consensus       102 ~~-~~~~~~~~~i~~~~~t~l~~~p~~~~  129 (240)
                      .+ ...+++...+++.++.++++......
T Consensus       105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~  133 (536)
T 3ni2_A          105 NPFSTPAELAKHAKASRAKLLITQACYYE  133 (536)
T ss_dssp             CTTCCHHHHHHHHHHHTEEEEEECGGGTH
T ss_pred             CCCCCHHHHHHHHHhcCCEEEEEChHHHH
Confidence            64 78899999999999999988765443

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=92.83  E-value=0.79  Score=38.06  Aligned_cols=101  Identities=13%  Similarity=0.050  Sum_probs=73.2

Q ss_pred             CCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc
Q 039504           23 PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ  102 (240)
Q Consensus        23 ~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~  102 (240)
                      |+.++.+....+     ....+|..++...+..+...+. ..++.++|++..+++....  +...+++++..|+..+...
T Consensus        32 p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~  103 (541)
T 1v25_A           32 GRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLR-ALGVGVGDRVATLGFNHFR--HLEAYFAVPGMGAVLHTAN  103 (541)
T ss_dssp             TTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECC
T ss_pred             CCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHH--HHHHHHHHHhcCcEEEecC
Confidence            455565543211     2346889998887766655443 4578999999998885543  3346789999999998876


Q ss_pred             -CCCHHHHHHHHHhccceeeeechHHHHHH
Q 039504          103 -KFEIGALLELIQRHRVSVAAVVPPLVLAL  131 (240)
Q Consensus       103 -~~~~~~~~~~i~~~~~t~l~~~p~~~~~l  131 (240)
                       ....+++...+++.++.++++.+.....+
T Consensus       104 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~  133 (541)
T 1v25_A          104 PRLSPKEIAYILNHAEDKVLLFDPNLLPLV  133 (541)
T ss_dssp             TTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred             cccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence             47889999999999999999887765444

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=92.79  E-value=0.78  Score=38.17  Aligned_cols=104  Identities=9%  Similarity=0.068  Sum_probs=73.7

Q ss_pred             CCCcEEEecCCC-CCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           23 PDDPVALPFSSG-TTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        23 ~~~~~~i~~TSG-tTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      |+.++++....+ ..+.  .-.+|...+......+...+. ..++.++|++..+++-...  +...+++++..|+..+..
T Consensus        33 p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl  107 (549)
T 3g7s_A           33 GEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGIS-RKGVRKGEHVGVCIPNSID--YVMTIYALWRVAATPVPI  107 (549)
T ss_dssp             TTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEC
T ss_pred             CCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHH--HHHHHHHHHHhCCEEEcc
Confidence            556666554321 1122  245788888877766655443 4578999999998886543  334678999999999888


Q ss_pred             cC-CCHHHHHHHHHhccceeeeechHHHHHH
Q 039504          102 QK-FEIGALLELIQRHRVSVAAVVPPLVLAL  131 (240)
Q Consensus       102 ~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l  131 (240)
                      .+ ...+++..++++.+++.+++.......+
T Consensus       108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~  138 (549)
T 3g7s_A          108 NPMYKSFELEHILNDSEATTLVVHSMLYENF  138 (549)
T ss_dssp             CTTCCHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred             CCCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence            64 7788999999999999998887655544

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=92.77  E-value=0.53  Score=38.69  Aligned_cols=86  Identities=15%  Similarity=0.071  Sum_probs=67.4

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~  120 (240)
                      ..+|..++...+..+...+. ..++.++|++..+++....  +...+++++..|+..+..++ ...+++...+++.++.+
T Consensus        30 ~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~  106 (509)
T 3ivr_A           30 VRLTHRDYLARAERLASGLL-RDGVHTGDRVAILSQNCSE--MIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSV  106 (509)
T ss_dssp             EEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSCHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEE
T ss_pred             cEEcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHH--HHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceE
Confidence            46899999888776665443 3578999999998886543  33467899999999998864 78899999999999999


Q ss_pred             eeechHHHHH
Q 039504          121 AAVVPPLVLA  130 (240)
Q Consensus       121 l~~~p~~~~~  130 (240)
                      +++.......
T Consensus       107 vi~~~~~~~~  116 (509)
T 3ivr_A          107 VVAGTDYRDI  116 (509)
T ss_dssp             EEECSTTHHH
T ss_pred             EEECcchhhh
Confidence            9988766554

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=91.94  E-value=0.27  Score=40.97  Aligned_cols=88  Identities=13%  Similarity=0.053  Sum_probs=67.8

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  120 (240)
                      ..+|...+......+...+. ..++.++|++..+++....  +...+++++..|+..+... ....+++...+++.++++
T Consensus        49 ~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~  125 (550)
T 3rix_A           49 VNITYAEYFEMSVRLAEAMK-RYGLNTNHRIVVCSENSLQ--FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV  125 (550)
T ss_dssp             CEEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEEECSSCTT--THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred             cEeEHHHHHHHHHHHHHHHH-HhCCCCCCEEEEEcCCccc--HHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeE
Confidence            35889998887776665443 4578999999998885433  3346789999999998876 478899999999999999


Q ss_pred             eeechHHHHHHH
Q 039504          121 AAVVPPLVLALA  132 (240)
Q Consensus       121 l~~~p~~~~~l~  132 (240)
                      +++....+..+.
T Consensus       126 vi~~~~~~~~~~  137 (550)
T 3rix_A          126 VFVSKKGLQKIL  137 (550)
T ss_dssp             EEECGGGHHHHH
T ss_pred             EEEcHHHHHHHH
Confidence            998876655443

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=91.91  E-value=1.2  Score=36.18  Aligned_cols=106  Identities=15%  Similarity=0.092  Sum_probs=75.3

Q ss_pred             CCCCcEEEecCC--CCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504           22 EPDDPVALPFSS--GTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL   99 (240)
Q Consensus        22 ~~~~~~~i~~TS--GtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v   99 (240)
                      .|+.++++....  +.+|  ....+|..++...+..+...+. ..+. ++|++..+++....  +...+++++..|+..+
T Consensus        37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~-~~g~-~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~v  110 (480)
T 3t5a_A           37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELS-RCGS-TGDRVVISAPQGLE--YVVAFLGALQAGRIAV  110 (480)
T ss_dssp             STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHT-TSSC-TTCEEEEECCSSHH--HHHHHHHHHHTTCEEE
T ss_pred             CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHH-hcCC-CCCEEEEEcCCcHH--HHHHHHHHHHhCcEEE
Confidence            356666665432  2222  3357899999888877776655 3455 89999988875543  3346789999999988


Q ss_pred             EccC----CCHHHHHHHHHhccceeeeechHHHHHHHh
Q 039504          100 LMQK----FEIGALLELIQRHRVSVAAVVPPLVLALAK  133 (240)
Q Consensus       100 ~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~  133 (240)
                      ....    ...+++..++++.++.+++........+..
T Consensus       111 pl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~  148 (480)
T 3t5a_A          111 PLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ  148 (480)
T ss_dssp             EECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred             eeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence            8753    456788999999999999998876665544

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=91.69  E-value=0.71  Score=38.68  Aligned_cols=104  Identities=19%  Similarity=0.194  Sum_probs=74.9

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .|+.++.+....  .|  ....+|...+...+..+...+...+++.++|++..+++....  +...+++++..|+..+..
T Consensus        56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Ga~~vpl  129 (570)
T 3c5e_A           56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE--WWLVILGCIRAGLIFMPG  129 (570)
T ss_dssp             SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH--HHHHHHHHHHHTCEEEEC
T ss_pred             CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCeEEEec
Confidence            456666655321  11  235689999888877666655433388999999998886543  334578999999998887


Q ss_pred             cC-CCHHHHHHHHHhccceeeeechHHHHHH
Q 039504          102 QK-FEIGALLELIQRHRVSVAAVVPPLVLAL  131 (240)
Q Consensus       102 ~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l  131 (240)
                      .. ...+++...+++.++..+++.+.....+
T Consensus       130 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~  160 (570)
T 3c5e_A          130 TIQMKSTDILYRLQMSKAKAIVAGDEVIQEV  160 (570)
T ss_dssp             CTTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred             CCCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence            64 7788999999999999998877665544

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=91.53  E-value=1.1  Score=36.80  Aligned_cols=87  Identities=24%  Similarity=0.195  Sum_probs=64.3

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~  120 (240)
                      ..+|..++......+...+. ..++.++|++..+++....  +...+++++..|+..+..++ ...+++...+++.+++.
T Consensus        28 ~~~Ty~el~~~~~~~A~~L~-~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~  104 (504)
T 1t5h_X           28 LRLTHAELRARVEAVAARLH-ADGLRPQQRVAVVAPNSAD--VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTA  104 (504)
T ss_dssp             EEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSCHH--HHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSE
T ss_pred             ceeEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHH--HHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcE
Confidence            46899998887766655443 3578999999998886543  33467899999999888764 77889999999999998


Q ss_pred             eee--chHHHHHH
Q 039504          121 AAV--VPPLVLAL  131 (240)
Q Consensus       121 l~~--~p~~~~~l  131 (240)
                      ++.  .+.....+
T Consensus       105 ~i~~~~~~~~~~~  117 (504)
T 1t5h_X          105 AVIAVGRQVADAI  117 (504)
T ss_dssp             EEECC--CHHHHH
T ss_pred             EEEecchhhhhhh
Confidence            887  55544443

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=91.11  E-value=1.2  Score=38.14  Aligned_cols=100  Identities=21%  Similarity=0.227  Sum_probs=71.7

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .|+.++++.... ..|  ....+|..++...+..+...+....++.++|++..++|....  +...+++++..|+..+..
T Consensus        95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e--~v~a~lA~~~~Gav~vpl  169 (663)
T 1ry2_A           95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPE--AIITLLAISRIGAIHSVV  169 (663)
T ss_dssp             CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHH--HHHHHHHHHHTTCEEEEC
T ss_pred             CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEEee
Confidence            356666665422 112  234688999888877766544313478999999999986543  333578999999888887


Q ss_pred             c-CCCHHHHHHHHHhccceeeeechH
Q 039504          102 Q-KFEIGALLELIQRHRVSVAAVVPP  126 (240)
Q Consensus       102 ~-~~~~~~~~~~i~~~~~t~l~~~p~  126 (240)
                      . .+..+++...+++.++.++++...
T Consensus       170 ~~~~~~~~l~~~l~~~~~~~li~~~~  195 (663)
T 1ry2_A          170 FAGFSSNSLRDRINDGDSKVVITTDE  195 (663)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred             CCCCCHHHHHHHHHhcCCeEEEEccc
Confidence            5 588999999999999998887543

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=90.68  E-value=1.3  Score=37.03  Aligned_cols=86  Identities=14%  Similarity=0.035  Sum_probs=65.5

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~  120 (240)
                      ..+|...+...+..+...+. ..++.++|++..+++....  +...+++++..|+..+...+ ...+++..++++.++..
T Consensus        63 ~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~  139 (563)
T 1amu_A           63 EQLTYHELNVKANQLARIFI-EKGIGKDTLVGIMMEKSID--LFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARM  139 (563)
T ss_dssp             EEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSE
T ss_pred             ceecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCE
Confidence            35888888877766555433 3478999999988886543  33467899999999988764 77889999999999999


Q ss_pred             eeechHHHHH
Q 039504          121 AAVVPPLVLA  130 (240)
Q Consensus       121 l~~~p~~~~~  130 (240)
                      ++..+.....
T Consensus       140 li~~~~~~~~  149 (563)
T 1amu_A          140 LLTQKHLVHL  149 (563)
T ss_dssp             EEECGGGHHH
T ss_pred             EEEcCchhhh
Confidence            9887765443

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=90.56  E-value=0.66  Score=38.34  Aligned_cols=85  Identities=14%  Similarity=0.087  Sum_probs=65.2

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+. ..++.++|++..+++....  +...+++++..|+..+.... ..++++...+++.++..+
T Consensus        48 ~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v  124 (529)
T 2v7b_A           48 STTYGELEERARRFASALR-TLGVHPEERILLVMLDTVA--LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAV  124 (529)
T ss_dssp             EEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSTH--HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEE
T ss_pred             CccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHH--HHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEE
Confidence            5888888887766655443 4578999999998886543  33457899999999888764 788999999999999998


Q ss_pred             eechHHHHH
Q 039504          122 AVVPPLVLA  130 (240)
Q Consensus       122 ~~~p~~~~~  130 (240)
                      ++.+.....
T Consensus       125 i~~~~~~~~  133 (529)
T 2v7b_A          125 IASGALVQN  133 (529)
T ss_dssp             EEEGGGHHH
T ss_pred             EechhhhhH
Confidence            887765443

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=90.51  E-value=1.3  Score=37.23  Aligned_cols=97  Identities=13%  Similarity=0.093  Sum_probs=72.0

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .|+.++++.....  |  ....+|...+......+...+. ..++.++|++..+++....  +...+++++..|+..+..
T Consensus        69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~-~~Gv~~Gd~V~l~~~~~~e--~~~~~lA~~~~Gav~vpl  141 (580)
T 3etc_A           69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFV-KHGIGKGDYVMLTLKSRYD--FWYCMLGLHKLGAIAVPA  141 (580)
T ss_dssp             CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECTTCTH--HHHHHHHHHHHTCEEEEC
T ss_pred             CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHH--HHHHHHHHHhCCEEEEeC
Confidence            4677777654321  1  2356888888887766665443 4588999999998885443  444678999999999887


Q ss_pred             c-CCCHHHHHHHHHhccceeeeech
Q 039504          102 Q-KFEIGALLELIQRHRVSVAAVVP  125 (240)
Q Consensus       102 ~-~~~~~~~~~~i~~~~~t~l~~~p  125 (240)
                      . ....+++...+++.++..+++..
T Consensus       142 ~~~~~~~~l~~~l~~~~~~~ii~~~  166 (580)
T 3etc_A          142 THMLKTRDIVYRIEKAGLKMIVCIA  166 (580)
T ss_dssp             CTTCCHHHHHHHHHHHTCCEEEEES
T ss_pred             CccCCHHHHHHHHHhcCCCEEEEec
Confidence            6 47889999999999999888754

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=90.06  E-value=0.79  Score=41.14  Aligned_cols=96  Identities=17%  Similarity=0.141  Sum_probs=70.7

Q ss_pred             CCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc
Q 039504           23 PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ  102 (240)
Q Consensus        23 ~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~  102 (240)
                      |+.++.+...+|       ..+|..++......+...+. ..++.++|++..+++....  +...+++++..|+..+...
T Consensus        75 pd~~Al~~~~~~-------~~~TY~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~ns~e--~~v~~lA~~~~Ga~~vpl~  144 (979)
T 3tsy_A           75 ATKPCLINGPTG-------HVYTYSDVHVISRQIAANFH-KLGVNQNDVVMLLLPNCPE--FVLSFLAASFRGATATAAN  144 (979)
T ss_dssp             TTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECSSCHH--HHHHHHHHHHHTCEEEEEC
T ss_pred             CCCeEEEECCCC-------cEEEHHHHHHHHHHHHHHHH-HcCCCCcCEEEEEeCCCHH--HHHHHHHHHHcCCEEEeeC
Confidence            566666543222       35788888887766655443 4578999999998886533  3346789999999988876


Q ss_pred             -CCCHHHHHHHHHhccceeeeechHHH
Q 039504          103 -KFEIGALLELIQRHRVSVAAVVPPLV  128 (240)
Q Consensus       103 -~~~~~~~~~~i~~~~~t~l~~~p~~~  128 (240)
                       ...++++...+++.++.++++.....
T Consensus       145 ~~~~~~~l~~~l~~~~~~~vi~~~~~~  171 (979)
T 3tsy_A          145 PFFTPAEIAKQAKASNTKLIITEARYV  171 (979)
T ss_dssp             TTSCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred             CCCCHHHHHHHHHHcCCeEEEEChHHH
Confidence             47889999999999999998876543

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=89.70  E-value=1.7  Score=37.11  Aligned_cols=97  Identities=18%  Similarity=0.166  Sum_probs=69.5

Q ss_pred             CCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc
Q 039504           23 PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ  102 (240)
Q Consensus        23 ~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~  102 (240)
                      |+.++++.... .+|  ....+|...+...+..+...+. ..++.++|++..++|.....  ...+++++..|+..+...
T Consensus        90 pd~~Al~~~~~-~~~--~~~~lTY~eL~~~v~~lA~~L~-~~Gv~~Gd~V~i~~~~~~e~--vva~lA~~~~Gav~vpl~  163 (652)
T 1pg4_A           90 GDRTAIIWEGD-DTS--QSKHISYRELHRDVCRFANTLL-DLGIKKGDVVAIYMPMVPEA--AVAMLACARIGAVHSVIF  163 (652)
T ss_dssp             TTSEEEEEECS-STT--CEEEEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEECC
T ss_pred             CCceEEEEEcC-CCC--ceeEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHHH--HHHHHHHHHcCcEEEecC
Confidence            55566654321 112  2346889998887776665443 45789999999999865443  335788999998888875


Q ss_pred             -CCCHHHHHHHHHhccceeeeech
Q 039504          103 -KFEIGALLELIQRHRVSVAAVVP  125 (240)
Q Consensus       103 -~~~~~~~~~~i~~~~~t~l~~~p  125 (240)
                       .+.++++...+++.++.++++..
T Consensus       164 ~~~~~~~l~~~l~~~~~~~li~~~  187 (652)
T 1pg4_A          164 GGFSPEAVAGCIIDSSSRLVITAD  187 (652)
T ss_dssp             TTSCHHHHHHHHHHHTCSEEEEES
T ss_pred             CCCCHHHHHHHHHhcCCCEEEEcC
Confidence             58889999999999999887753

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=89.39  E-value=1.7  Score=36.33  Aligned_cols=81  Identities=20%  Similarity=0.193  Sum_probs=63.5

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|...+...+..+...+. ..++.++|++..+++....  +...+++++..|+..+...+ ...+++..++++.++.++
T Consensus       100 ~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~  176 (570)
T 4gr5_A          100 ELTYGALNERANRLAHRLV-GLGVAPGTLVGVHLERGFD--MVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLL  176 (570)
T ss_dssp             EEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred             cEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHH--HHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEE
Confidence            5889998887776665443 3578999999998886543  33467899999999988864 788999999999999988


Q ss_pred             eechH
Q 039504          122 AVVPP  126 (240)
Q Consensus       122 ~~~p~  126 (240)
                      ++...
T Consensus       177 i~~~~  181 (570)
T 4gr5_A          177 VTSRP  181 (570)
T ss_dssp             EECTT
T ss_pred             Eecch
Confidence            87654

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=89.36  E-value=0.68  Score=38.54  Aligned_cols=87  Identities=9%  Similarity=0.010  Sum_probs=66.3

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  120 (240)
                      ..+|..++...+..+...+. ..++.++|++..+++....  +...+++++..|+..+... ....+++...+++.++.+
T Consensus        51 ~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~e--~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~  127 (548)
T 2d1s_A           51 VDYSYAEYLEKSCCLGKALQ-NYGLVVDGRIALCSENCEE--FFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTI  127 (548)
T ss_dssp             CEEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEEECSSCTT--THHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSE
T ss_pred             CEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchh--HHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeE
Confidence            35888888887766655443 3578999999998885543  3346789999999888876 478899999999999999


Q ss_pred             eeechHHHHHH
Q 039504          121 AAVVPPLVLAL  131 (240)
Q Consensus       121 l~~~p~~~~~l  131 (240)
                      +++.+.....+
T Consensus       128 vi~~~~~~~~~  138 (548)
T 2d1s_A          128 VFSSKKGLDKV  138 (548)
T ss_dssp             EEECTTTHHHH
T ss_pred             EEEcHHHHHHH
Confidence            99877655443

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=89.36  E-value=1.3  Score=36.53  Aligned_cols=96  Identities=14%  Similarity=0.109  Sum_probs=70.3

Q ss_pred             CCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc
Q 039504           23 PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ  102 (240)
Q Consensus        23 ~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~  102 (240)
                      |+.++++..  +     +...+|..++......+...+. ..++.++|++..+++....  +...+++++..|+..+..+
T Consensus        30 p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~   99 (517)
T 3r44_A           30 PRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLT-ALGIAKGDRVALLMPNSVE--FCCLFYGAAKLGAVAVPIN   99 (517)
T ss_dssp             TTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEECC
T ss_pred             CCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHH-HcCCCCcCEEEEEcCCCHH--HHHHHHHHHHhCcEEEecC
Confidence            566666553  1     1246889998887766655443 4578999999999886543  3346789999999999886


Q ss_pred             C-CCHHHHHHHHHhccceeeeechHHH
Q 039504          103 K-FEIGALLELIQRHRVSVAAVVPPLV  128 (240)
Q Consensus       103 ~-~~~~~~~~~i~~~~~t~l~~~p~~~  128 (240)
                      + ...+++..++++.++.++++.....
T Consensus       100 ~~~~~~~l~~~l~~~~~~~vi~~~~~~  126 (517)
T 3r44_A          100 TRLAAPEVSFILSDSGSKVVIYGAPSA  126 (517)
T ss_dssp             TTSCHHHHHHHHHHHTCSEEEECGGGH
T ss_pred             cccCHHHHHHHHHhcCceEEEECCchH
Confidence            4 7788999999999999888766543

>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}

Probab=89.22  E-value=4.3  Score=29.25  Aligned_cols=94  Identities=13%  Similarity=0.112  Sum_probs=57.6

Q ss_pred             CCcEEEEecch-HHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceeeee--c----hHH--HHHHHhCCCC
Q 039504           68 NGDVVLCVLPL-FHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVAAV--V----PPL--VLALAKNPMV  137 (240)
Q Consensus        68 ~~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~--~----p~~--~~~l~~~~~~  137 (240)
                      .+.+++.+.+- .|..|....-...-..|..++... ...++++.+.++++++.++..  +    +++  +..+.+..+.
T Consensus        92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~  171 (215)
T 3ezx_A           92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNE  171 (215)
T ss_dssp             CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHH
Confidence            34445544443 577787755556667788887765 578899999999999997666  2    221  2233332222


Q ss_pred             CCCCccchhhhhccCCCCCHHHHHHH
Q 039504          138 ADYDLSSIRVVLSGAAPLGKELEDAL  163 (240)
Q Consensus       138 ~~~~~~~lr~v~~~G~~~~~~~~~~~  163 (240)
                      .+.. +.++ +++||.+++++..+.+
T Consensus       172 ~~~~-~~v~-v~vGG~~~~~~~a~~i  195 (215)
T 3ezx_A          172 EKLR-DSVK-CMFGGAPVSDKWIEEI  195 (215)
T ss_dssp             TTCG-GGSE-EEEESSSCCHHHHHHH
T ss_pred             cCCC-CCCE-EEEECCCCCHHHHHHh
Confidence            1110 1233 6789999997765543

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=88.46  E-value=0.14  Score=42.89  Aligned_cols=32  Identities=28%  Similarity=0.365  Sum_probs=26.2

Q ss_pred             CCCCCCcEEEecCCCCC-CCCceeeeehHHHHH
Q 039504           20 AIEPDDPVALPFSSGTT-GLPKGVVLTHKSLIT   51 (240)
Q Consensus        20 ~~~~~~~~~i~~TSGtT-G~pk~v~~s~~~l~~   51 (240)
                      -+.++.+.+...||||| |.+|.+++|...+..
T Consensus        94 iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~  126 (581)
T 4epl_A           94 ILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN  126 (581)
T ss_dssp             SSSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred             ccCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence            34566677888899999 779999999998755

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=88.23  E-value=1.8  Score=35.88  Aligned_cols=92  Identities=18%  Similarity=0.088  Sum_probs=68.3

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .|+.++.+..         .-.+|..++......+...+. ..++.++|++..+++....  +...+++++..|+..+..
T Consensus        43 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~Gav~vpl  110 (544)
T 3o83_A           43 HPHSLAIICG---------ERQLSYIELDRLSTNLATRLA-EKGLGKGDTALVQLPNVAE--FYIVFFALLKAGVVVLNA  110 (544)
T ss_dssp             CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEECCCSSHH--HHHHHHHHHHHTCEEEEC
T ss_pred             CCCceEEEcC---------CCceeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEECCCCHH--HHHHHHHHHHhCcEEecC
Confidence            3566666531         245889998887766665443 4578999999988875543  334678999999988877


Q ss_pred             c-CCCHHHHHHHHHhccceeeeech
Q 039504          102 Q-KFEIGALLELIQRHRVSVAAVVP  125 (240)
Q Consensus       102 ~-~~~~~~~~~~i~~~~~t~l~~~p  125 (240)
                      . ....+++...+++.++.++++..
T Consensus       111 ~~~~~~~~l~~~l~~~~~~~li~~~  135 (544)
T 3o83_A          111 LYSHRQYELNAFIKQIQPKLLIGSR  135 (544)
T ss_dssp             CTTCCHHHHHHHHHHHCCSEEEEET
T ss_pred             CCCCCHHHHHHHHHhcCeeEEEEcc
Confidence            5 47788999999999999888765

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=88.15  E-value=1.4  Score=36.20  Aligned_cols=82  Identities=16%  Similarity=0.123  Sum_probs=63.6

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++......+...+. ..++.++|++..+++....  +...+++++..|+..+...+ ...+++..++++.++.++
T Consensus        28 ~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~v  104 (503)
T 4fuq_A           28 KISYAELVARAGRVANVLV-ARGLQVGDRVAAQTEKSVE--ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIV  104 (503)
T ss_dssp             EEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSCHH--HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEE
T ss_pred             EEEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHH--HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEE
Confidence            4888888887766655443 3478999999998886543  33467899999999988864 788999999999999998


Q ss_pred             eechHH
Q 039504          122 AVVPPL  127 (240)
Q Consensus       122 ~~~p~~  127 (240)
                      ++.+..
T Consensus       105 i~~~~~  110 (503)
T 4fuq_A          105 VCDPSK  110 (503)
T ss_dssp             EECGGG
T ss_pred             EECchh
Confidence            887643

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=87.44  E-value=3.2  Score=34.70  Aligned_cols=102  Identities=12%  Similarity=0.061  Sum_probs=73.1

Q ss_pred             CCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc
Q 039504           23 PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ  102 (240)
Q Consensus        23 ~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~  102 (240)
                      |+.++++....+     ..-.+|...+...+..+...+. ..++.++|++..+++....  +...+++++..|+..+...
T Consensus        25 p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~-~~gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~   96 (590)
T 3kxw_A           25 PNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQ-AEGAKPGDRVLLLFAPGLP--LIQAFLGCLYAGCIAVPIY   96 (590)
T ss_dssp             TTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEEC
T ss_pred             CCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCchh--HHHHHHHHHHhCcEEEEec
Confidence            566666543311     2356899998887776655443 3478999999998886543  3346789999999998876


Q ss_pred             CC----CHHHHHHHHHhccceeeeechHHHHHHH
Q 039504          103 KF----EIGALLELIQRHRVSVAAVVPPLVLALA  132 (240)
Q Consensus       103 ~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~  132 (240)
                      +.    ..+++...++..++.++.........+.
T Consensus        97 ~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~  130 (590)
T 3kxw_A           97 PPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT  130 (590)
T ss_dssp             CCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred             CCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence            53    3467788899999999998888776654

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=84.85  E-value=1.7  Score=35.80  Aligned_cols=80  Identities=13%  Similarity=0.046  Sum_probs=61.0

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+. ..++.++|++..+++....  +...+++++..|+..+... ....+++..++++.++..+
T Consensus        29 ~~Ty~el~~~~~~lA~~L~-~~g~~~gd~V~i~~~n~~~--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~i  105 (521)
T 3l8c_A           29 RRTYGQLKRDSDSIAAFID-SLALLAKSPVLVFGAQTYD--MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLI  105 (521)
T ss_dssp             EEEHHHHHHHHHHHHHHHH-HTCCCTTCCEEEEECSSHH--HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEE
T ss_pred             eecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEE
Confidence            4788888887766655443 4578899999988875443  3346789999999888875 5788999999999999988


Q ss_pred             eech
Q 039504          122 AVVP  125 (240)
Q Consensus       122 ~~~p  125 (240)
                      ++..
T Consensus       106 i~~~  109 (521)
T 3l8c_A          106 IAIE  109 (521)
T ss_dssp             EESS
T ss_pred             EecC
Confidence            7643

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=84.68  E-value=2.7  Score=34.49  Aligned_cols=79  Identities=9%  Similarity=0.064  Sum_probs=59.6

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+. ..++.++|++..+++....  +...+++++..|+..+... ....+++..++++.++..+
T Consensus        26 ~~Ty~el~~~~~~lA~~L~-~~g~~~gd~V~i~~~n~~e--~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~  102 (512)
T 3fce_A           26 KITYKQLKEDSDALAHWIS-SEYPDDRSPIMVYGHMQPE--MIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLL  102 (512)
T ss_dssp             EEEHHHHHHHHHHHHHHHH-HHSTTCCCCEEEEESSCHH--HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEE
T ss_pred             eEEHHHHHHHHHHHHHHHH-HhCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEE
Confidence            5788888887766655443 3477899999888775433  3346789999999888875 4788999999999998887


Q ss_pred             eec
Q 039504          122 AVV  124 (240)
Q Consensus       122 ~~~  124 (240)
                      +..
T Consensus       103 i~~  105 (512)
T 3fce_A          103 LSA  105 (512)
T ss_dssp             EES
T ss_pred             Eec
Confidence            764

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=84.36  E-value=2.9  Score=34.33  Aligned_cols=81  Identities=11%  Similarity=0.074  Sum_probs=60.8

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  120 (240)
                      -.+|..++...+..+...+....+..+++++..+++....  +...+++++..|+..+... ....+++...+++.++++
T Consensus        25 ~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~  102 (511)
T 3e7w_A           25 QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPH--MIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAEL  102 (511)
T ss_dssp             EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHH--HHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCE
T ss_pred             ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHH--HHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCE
Confidence            4589999988877766655434567788988877764432  3346789999999888875 578899999999999998


Q ss_pred             eeec
Q 039504          121 AAVV  124 (240)
Q Consensus       121 l~~~  124 (240)
                      ++..
T Consensus       103 li~~  106 (511)
T 3e7w_A          103 LIHA  106 (511)
T ss_dssp             EEES
T ss_pred             EEec
Confidence            8763

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=82.85  E-value=2.4  Score=35.09  Aligned_cols=81  Identities=15%  Similarity=0.139  Sum_probs=61.8

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  120 (240)
                      ..+|..++......+...+. ..++.++|++..+++....  +...+++++..|+..+... ....+++...+++.++..
T Consensus        49 ~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~  125 (539)
T 1mdb_A           49 THWSYRELDTRADRLAAGFQ-KLGIQQKDRVVVQLPNIKE--FFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAA  125 (539)
T ss_dssp             EEEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEECCCSSHH--HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSE
T ss_pred             CcccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHH--HHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCE
Confidence            46889888887766655443 4578999999988885543  3346789999999888765 477889999999999998


Q ss_pred             eeech
Q 039504          121 AAVVP  125 (240)
Q Consensus       121 l~~~p  125 (240)
                      ++...
T Consensus       126 vi~~~  130 (539)
T 1mdb_A          126 YIIPD  130 (539)
T ss_dssp             EEEES
T ss_pred             EEecc
Confidence            88754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	2e-53
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	2e-40
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	2e-31
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	4e-29
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	1e-16
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	1e-16
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	5e-12

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  180 bits (457), Expect = 2e-53
 Identities = 48/242 (19%), Positives = 92/242 (38%), Gaps = 15/242 (6%)

Query: 3   LHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENP 62
           L +  L E    +    A+  +DP+ + ++SG+TG PKGV+ T    +   A        
Sbjct: 231 LWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK---Y 287

Query: 63  NLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFE----IGALLELIQRHRV 118
                 GD+  C   +  +   + +L   L  GA  L+ +          + +++ +H+V
Sbjct: 288 VFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQV 347

Query: 119 SVAAVVPPLVLALAKNP--MVADYDLSSIRVVLSGAAPLGKELEDALRSRV--PQAILGQ 174
           ++    P  + AL       +   D SS+R++ S   P+  E  +    ++   +  +  
Sbjct: 348 NILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVD 407

Query: 175 GYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR 234
            +  TE G  +   L         K+GS        +  ++D E G        G + I 
Sbjct: 408 TWWQTETGGFMITPLP---GAIELKAGSATRPFFGVQPALVDNE-GHPQEGATEGNLVIT 463

Query: 235 GP 236
             
Sbjct: 464 DS 465

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  144 bits (364), Expect = 2e-40
 Identities = 50/245 (20%), Positives = 93/245 (37%), Gaps = 14/245 (5%)

Query: 1   NCLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGE 60
             L +    +  +   P   ++ +DP+ L ++SG+TG PKGV  +    +      +   
Sbjct: 216 RDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTM--- 272

Query: 61  NPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFE----IGALLELIQRH 116
                    DV      +  I     V+   L  G   L+ +            ++I  H
Sbjct: 273 RYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEH 332

Query: 117 RVSVAAVVPPLVLALAK--NPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAI--L 172
           +V+   V P  +  L +  +  + ++ L S+R + S   P+  E+ +    ++ +    +
Sbjct: 333 KVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPI 392

Query: 173 GQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASL-PHNQPGEI 231
              Y  TE+G  L   L  A    P K GS        +  V+DP TG  L   +  G +
Sbjct: 393 VDTYWQTESGSHLVTPL--AGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVL 450

Query: 232 CIRGP 236
            ++  
Sbjct: 451 AVKAA 455

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  118 bits (297), Expect = 2e-31
 Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 13/245 (5%)

Query: 4   HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPN 63
            +    EA  ++   V +       + +++GTTGLPKGVV +H++L+         +   
Sbjct: 149 GYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA 208

Query: 64  LYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAV 123
           L  +  DVVL V+P+FH+ +       +L     VL   + +  +L+EL     V+  A 
Sbjct: 209 L--SEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAG 266

Query: 124 VPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGP 183
           VP + LALA       + L ++R ++ G +   + L         +    QGYG+TE  P
Sbjct: 267 VPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVR--QGYGLTETSP 324

Query: 184 VLSMCL------GFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHN--QPGEICIRG 235
           V+            +++   T     G  +    L+V D E G  +P +    GE+ ++G
Sbjct: 325 VVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEE-GRPVPKDGKALGEVQLKG 383

Query: 236 PQIMK 240
           P I  
Sbjct: 384 PWITG 388

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  111 bits (279), Expect = 4e-29
 Identities = 76/232 (32%), Positives = 115/232 (49%), Gaps = 7/232 (3%)

Query: 9   SEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTN 68
              + D +PE          +  SSG+TGLPKGV L H++     +   D    N  +  
Sbjct: 172 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGN-QIIP 230

Query: 69  GDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLV 128
              +L V+P  H + + + L   +     VL M +FE    L  +Q +++  A +VP L 
Sbjct: 231 DTAILSVVPFHHGFGMFTTLGYLICGFRVVL-MYRFEEELFLRSLQDYKIQSALLVPTLF 289

Query: 129 LALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMC 188
              AK+ ++  YDLS++  + SG APL KE+ +A+  R     + QGYG+TE    + + 
Sbjct: 290 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT 349

Query: 189 LGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
                     K G+ G VV   E KV+D +TG +L  NQ GE+C+RGP IM 
Sbjct: 350 -----PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMS 396

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 76.2 bits (186), Expect = 1e-16
 Identities = 51/238 (21%), Positives = 91/238 (38%), Gaps = 10/238 (4%)

Query: 4   HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPN 63
            F  L +   + +    ++  D   L  S G+TGL K +  TH   I S+ + V      
Sbjct: 162 EFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSV----EV 217

Query: 64  LYLTNGDVVLCVLPLFHIYSLNSVLLCSL-RAGAGVLLMQKFEIGALLELIQRHRVSVAA 122
            +L +  V L  LP+ H Y L+S  +  +  AG  V+L           LI+R +V++ A
Sbjct: 218 CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITA 277

Query: 123 VVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAG 182
           +VPPL +           DLSS++V+  G A    E    +++     +           
Sbjct: 278 LVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEG-- 335

Query: 183 PVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
               +       P      + G  +   +   +  +    +   + G +  RGP  ++
Sbjct: 336 ---LVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIR 390

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 76.1 bits (186), Expect = 1e-16
 Identities = 40/241 (16%), Positives = 88/241 (36%), Gaps = 18/241 (7%)

Query: 2   CLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGEN 61
            +      +  E     V  +  D   + ++SGTTG PKG +L HK +        +  N
Sbjct: 144 EIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLN 203

Query: 62  PNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK--FEIGALLELIQRHRVS 119
                   D +     +    S+  + +  L   +  ++++    +     + I +  ++
Sbjct: 204 VTEK----DRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEIT 259

Query: 120 VAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMT 179
           V  + P           +    + SI+ +++  +     L +  + +V        YG T
Sbjct: 260 VITLPP------TYVVHLDPERILSIQTLITAGSATSPSLVNKWKEKVT---YINAYGPT 310

Query: 180 EAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
           E     +  +  A +     S   G  ++N ++ ++D E        + GE+CI G  + 
Sbjct: 311 ETTICATTWV--ATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLA 367

Query: 240 K 240
           +
Sbjct: 368 R 368

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 62.7 bits (151), Expect = 5e-12
 Identities = 50/232 (21%), Positives = 91/232 (39%), Gaps = 11/232 (4%)

Query: 10  EADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNG 69
            +    I +   EP  P  + ++SGTTGLPK  ++  ++  + V                
Sbjct: 139 YSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHG--RH 196

Query: 70  DVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSV--AAVVPPL 127
           +VVL ++PL+H+    +VL+ +L      +++++F     L+L+Q+ +V+   A      
Sbjct: 197 NVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLD 256

Query: 128 VLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSM 187
            LA A     +   L S+R V    A +   + + +   +P       YG TEA   L M
Sbjct: 257 ALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEK-VNIYGTTEAMNSLYM 315

Query: 188 CLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
                         S   +VR      I       + + + GE+ +      
Sbjct: 316 RQPKTGTEMAPGFFSEVRIVR------IGGGVDEIVANGEEGELIVAASDSA 361

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	99.98
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.96
d1amua_	514	Phenylalanine activating domain of gramicidin synt	99.95
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.89
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	94.13
d1amua_	514	Phenylalanine activating domain of gramicidin synt	93.92
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	93.66
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	93.65
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	93.41
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	93.2
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	90.58
d3bula2	156	Methionine synthase, C-terminal domain {Escherichi	88.52

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=2.4e-38  Score=267.51  Aligned_cols=225  Identities=20%  Similarity=0.273  Sum_probs=186.1

Q ss_pred             hhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhH
Q 039504            6 TVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLN   85 (240)
Q Consensus         6 ~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~   85 (240)
                      ++..+.......+..++++|+++|+|||||||.||+|.++|.+++.........   .++++++|++++.+|++|+.++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~  310 (643)
T d1pg4a_         234 RDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKY---VFDYHPGDIYWCTADVGWVTGHS  310 (643)
T ss_dssp             HHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHH
T ss_pred             hhhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHH---hhCCCCCCEEEEeCChHHHHHHH
Confidence            344444555556667789999999999999999999999999976554433221   34678999999999999999987


Q ss_pred             HHHHHHhhcCceEEEccC----CCHHHHHHHHHhccceeeeechHHHHHHHhCCCC--CCCCccchhhhhccCCCCCHHH
Q 039504           86 SVLLCSLRAGAGVLLMQK----FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV--ADYDLSSIRVVLSGAAPLGKEL  159 (240)
Q Consensus        86 ~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~lr~v~~~G~~~~~~~  159 (240)
                      ..++.++..|+++++.++    .++..++++++++++|++.++|++++.|++....  ...++++||.++++|+++++++
T Consensus       311 ~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~  390 (643)
T d1pg4a_         311 YLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEA  390 (643)
T ss_dssp             HTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHH
T ss_pred             HHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHH
Confidence            677889999999998653    5889999999999999999999999999887543  3456789999999999999999


Q ss_pred             HHHHHHhCC--CCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCC
Q 039504          160 EDALRSRVP--QAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQ  237 (240)
Q Consensus       160 ~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~  237 (240)
                      .+++.+.++  ++++++.||+||++..+...   .........+++|+|+++++++|+| +++++++.|+.|||+|+|+.
T Consensus       391 ~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~---~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~g~~Gel~v~~~~  466 (643)
T d1pg4a_         391 WEWYWKKIGKEKCPVVDTWWQTETGGFMITP---LPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSW  466 (643)
T ss_dssp             HHHHHHHTTTTCSCEEEEBCCGGGSSCSBCC---CTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSCC
T ss_pred             HHHHHHHhCCCCceEEEeechhhccceEEec---CCCccCCCCCccccccCCCEEEEEC-CCCCCCCCCceEEEEEecCC
Confidence            999999984  47799999999998765442   1122345678999999999999999 66999999999999999953

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=2e-34  Score=239.22  Aligned_cols=216  Identities=35%  Similarity=0.514  Sum_probs=181.5

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      .....++++++++|||||||.||+|.++|+++............ ...+.+.++++..+|++|..+.. ..+..+..++.
T Consensus       181 ~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~  258 (541)
T d1lcia_         181 ESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF-GNQIIPDTAILSVVPFHHGFGMF-TTLGYLICGFR  258 (541)
T ss_dssp             CCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT-SCCCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCE
T ss_pred             cccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcc-ccccccccccccccccccccccc-ccccccccccc
Confidence            34456688999999999999999999999999877665544332 44678899999999999998887 56677778888


Q ss_pred             EEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccc
Q 039504           98 VLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG  177 (240)
Q Consensus        98 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  177 (240)
                      .+.....+.......+.+++++.+..+|.++..+..........++++|.+++||++++++..+++.+.++..++++.||
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG  338 (541)
T d1lcia_         259 VVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYG  338 (541)
T ss_dssp             EEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEEC
T ss_pred             cccccccccchhHHHHhhhhccccccCccccccccccccccccccccceEEEecccccccccccccccccCCceeeecCC
Confidence            88888899999999999999999999999999999988888888899999999999999999999999996678999999


Q ss_pred             ccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          178 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       178 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      +||++..++..     .......+++|+|+|+++++|+|+|++++++.|++|||+|+|+++++
T Consensus       339 ~TE~~~~~~~~-----~~~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~  396 (541)
T d1lcia_         339 LTETTSAILIT-----PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMS  396 (541)
T ss_dssp             CGGGSSCSEEC-----CCC---CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCS
T ss_pred             ccccCceEEec-----CcccCCCCccccccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCC
Confidence            99998876664     23345667899999999999999999999999999999999999874

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-33  Score=239.05  Aligned_cols=220  Identities=22%  Similarity=0.318  Sum_probs=179.6

Q ss_pred             CCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhc
Q 039504           15 QIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRA   94 (240)
Q Consensus        15 ~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~   94 (240)
                      .......+++|+++|+|||||||.||+|+++|.++..........   .+.+.++|++++.+|++|+.+....++.++..
T Consensus       230 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~---~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~  306 (640)
T d1ry2a_         230 YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRY---TFDTHQEDVFFTAGDIGWITGHTYVVYGPLLY  306 (640)
T ss_dssp             CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHH---HSCCCSSCEEEECSCTTSHHHHHHTTHHHHHH
T ss_pred             ccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHh---hcCCCcccceeeccchhhhhhHHHHHHHHHHh
Confidence            334556778999999999999999999999999987765443321   23578999999999999999987678889999


Q ss_pred             CceEEEccC----CCHHHHHHHHHhccceeeeechHHHHHHHhCCCC--CCCCccchhhhhccCCCCCHHHHHHHHHhCC
Q 039504           95 GAGVLLMQK----FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV--ADYDLSSIRVVLSGAAPLGKELEDALRSRVP  168 (240)
Q Consensus        95 G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~  168 (240)
                      |+++++.+.    .++..+++.++++++|++.++|++++.|.+....  ...++++||.++++|+++++++.+++.+.++
T Consensus       307 G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g  386 (640)
T d1ry2a_         307 GCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIG  386 (640)
T ss_dssp             TSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTS
T ss_pred             CCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHHHHhcC
Confidence            998888654    4889999999999999999999999999876543  4567889999999999999999999999985


Q ss_pred             C--CcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCC-CCCCCceEEEeC--CCCC
Q 039504          169 Q--AILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASL-PHNQPGEICIRG--PQIM  239 (240)
Q Consensus       169 ~--~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~-~~g~~Gel~v~~--~~~~  239 (240)
                      .  ..+++.||+||++..+.....  .......++++|+|+|+++++|+|+++++.+ +.++.|||+|++  |+++
T Consensus       387 ~~~~~i~~~yg~te~~~~~~~~~~--~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~  460 (640)
T d1ry2a_         387 KNEIPIVDTYWQTESGSHLVTPLA--GGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFA  460 (640)
T ss_dssp             CSSSCEEECBCCTTTCSCSEECCT--TTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSC
T ss_pred             CCcceEEeeecccccccccccccC--CCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcc
Confidence            3  568999999999876554321  1223456789999999999999997766655 456679999998  4554

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=99.98  E-value=4.3e-32  Score=224.91  Aligned_cols=219  Identities=28%  Similarity=0.411  Sum_probs=175.4

Q ss_pred             CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504           17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGA   96 (240)
Q Consensus        17 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~   96 (240)
                      ......++++++++|||||||.||+|.++|.++..........  ........|+++..+|++|..++...+...+..|.
T Consensus       162 ~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~--~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~  239 (534)
T d1v25a_         162 DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLV--DGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAK  239 (534)
T ss_dssp             CCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTST--TTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCE
T ss_pred             cccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhh--cccccccccccccccchhhhccccccceeeeecce
Confidence            3456678899999999999999999999999997665443332  14467889999999999999888854544444444


Q ss_pred             eEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccc
Q 039504           97 GVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGY  176 (240)
Q Consensus        97 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  176 (240)
                      .+...+.+++..+..++.++++|++.++|+++..+..........++++|.+++||+++++++.+++++.  +.++++.|
T Consensus       240 ~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--~~~i~~~y  317 (534)
T d1v25a_         240 QVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGY  317 (534)
T ss_dssp             EEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHT--TCEEEEEE
T ss_pred             eeeccccccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCCCCHHHHHHHHHh--CCeeeeec
Confidence            4444566999999999999999999999999999988766667788999999999999999999998865  78999999


Q ss_pred             cccccccchhhccCCCCCCC------CCCCCccccccCCceEEEeeCCCCCCCCC--CCCceEEEeCCCCCC
Q 039504          177 GMTEAGPVLSMCLGFAKQPF------PTKSGSCGTVVRNAELKVIDPETGASLPH--NQPGEICIRGPQIMK  240 (240)
Q Consensus       177 G~tE~~~~~~~~~~~~~~~~------~~~~~~~G~~~~~~~v~i~d~~~~~~~~~--g~~Gel~v~~~~~~~  240 (240)
                      |+||++.++...........      ....+++|+|+|+++++|+| +++++++.  |+.|||+|+||++++
T Consensus       318 G~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~  388 (534)
T d1v25a_         318 GLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITG  388 (534)
T ss_dssp             ECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBS
T ss_pred             cccccccceeecccCccccccCccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccc
Confidence            99999987765421110000      01235899999999999999 56888876  679999999999874

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.96  E-value=6.8e-29  Score=205.40  Aligned_cols=215  Identities=26%  Similarity=0.364  Sum_probs=177.6

Q ss_pred             CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHH-HHHHhhcC
Q 039504           17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSV-LLCSLRAG   95 (240)
Q Consensus        17 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~-~~~~l~~G   95 (240)
                      ......++|+++++|||||||.||+|.++|.++.........    .+.+.++|++++..|+.|.+++... ....+..|
T Consensus       175 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g  250 (536)
T d1mdba_         175 KLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE----VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAG  250 (536)
T ss_dssp             CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH----HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTT
T ss_pred             CCCccCccchHHhhhcccccccceeccccccccccccccccc----ccccccccccccccccccccceeecccccccccc
Confidence            445677899999999999999999999999999998877666    4568999999999999999887633 44445557


Q ss_pred             ceEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccc
Q 039504           96 AGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG  175 (240)
Q Consensus        96 ~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  175 (240)
                      .+++..+.+++..+++.+++++++.+..+|..+..+..........++++|.+++||+++++.+.+++.+.+ +......
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~  329 (536)
T d1mdba_         251 GRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQV  329 (536)
T ss_dssp             CEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEE
T ss_pred             ccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhhcc-Cceeeec
Confidence            888888889999999999999999999999999988887666667788999999999999999999999999 6778888


Q ss_pred             ccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          176 YGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       176 yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      |+.+|....+....    .......+++|.|.++....+++.+++++++.++.|||+|+|+.+++
T Consensus       330 ~~~~~~~~~~~~~~----~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~  390 (536)
T d1mdba_         330 FGMAEGLVNYTRLD----DPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIR  390 (536)
T ss_dssp             EECTTSCEEECCTT----SCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCS
T ss_pred             cccccccccccccc----cccccccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCcccc
Confidence            88888765444321    11223346889998766655555588999999999999999999874

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=99.95  E-value=9.1e-27  Score=191.79  Aligned_cols=206  Identities=20%  Similarity=0.305  Sum_probs=165.6

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      ..+..++|+++++|||||||.||++.++|.++.........    .+.....|+++...|++|..++. .++.++..|+.
T Consensus       160 ~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~~~~  234 (514)
T d1amua_         160 HVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFEN----SLNVTEKDRIGQFASISFDASVW-EMFMALLTGAS  234 (514)
T ss_dssp             CCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHH----TSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCE
T ss_pred             CCCCCcccceEEEEccCCCCCcccccccccccccccccccc----cccccccccccceeccccccccc-ccccccccccc
Confidence            34566889999999999999999999999999988877776    55689999999999999999887 56777777878


Q ss_pred             EEEccC---CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccc
Q 039504           98 VLLMQK---FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ  174 (240)
Q Consensus        98 ~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  174 (240)
                      ++....   .+....++.+..+..+.+...|.....      .....+.++|.++++|+++++++.+++.+   +..+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~G~~~~~~~~~~~~~---~~~~~~  305 (514)
T d1amua_         235 LYIILKDTINDFVKFEQYINQKEITVITLPPTYVVH------LDPERILSIQTLITAGSATSPSLVNKWKE---KVTYIN  305 (514)
T ss_dssp             EEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTT------SCTTTCCSCSEEEEESSCCCHHHHHHHTT---TSEEEE
T ss_pred             ccccccccccchhhhhhhhhhhhcccccceeeeccc------ccccccccccEEEEecccCCHHHhhhhcc---ceeEEE
Confidence            877653   677888999999999999998876553      23346788999999999999999887766   678999


Q ss_pred             cccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          175 GYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       175 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      .||+||++.++......  ........+.|.+.+...+.+.| +++++++.|+.|||+|+||.+++
T Consensus       306 ~yG~tE~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~d-~~~~~~~~g~~GEl~v~~~~~~~  368 (514)
T d1amua_         306 AYGPTETTICATTWVAT--KETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLAR  368 (514)
T ss_dssp             EECCGGGSSCSEEEECC--SSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCC
T ss_pred             eeccccCceeeeecccc--ccccCcccccccceeeeeEeeec-ccceecCCCCeeEEEEccCcccc
Confidence            99999999876554322  22233456789999999999999 78999999999999999999874

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=99.89  E-value=1.9e-22  Score=164.83  Aligned_cols=213  Identities=22%  Similarity=0.294  Sum_probs=166.1

Q ss_pred             CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504           17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGA   96 (240)
Q Consensus        17 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~   96 (240)
                      .....+++++++++|||||||.||++.++|.++...........  .......++++..+|+.+..+.....+.+...+.
T Consensus       146 ~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  223 (503)
T d3cw9a1         146 EDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV--GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDG  223 (503)
T ss_dssp             CCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTS--CCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTC
T ss_pred             ccccchhhhhhhhcccccccccccccccccchhhhhhhhccccc--cccccccccccccCcccccccccccccccccccc
Confidence            34567789999999999999999999999999988876665432  2245667889999999888777766777888888


Q ss_pred             eEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCC--CCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccc
Q 039504           97 GVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPM--VADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ  174 (240)
Q Consensus        97 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  174 (240)
                      .++..+.+++..++..+.+++++.+..+|..+..+.....  .....++++|.+++||++++++...++...+ +..+.+
T Consensus       224 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~-~~~~~~  302 (503)
T d3cw9a1         224 TYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVN  302 (503)
T ss_dssp             EEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHC-CSEEEE
T ss_pred             ccccccccChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEeccccccccccccccccc-cccccc
Confidence            8999999999999999999999999999998887655322  2344567899999999999999999999998 678999


Q ss_pred             cccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCC
Q 039504          175 GYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQI  238 (240)
Q Consensus       175 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~  238 (240)
                      .||++|++..+.....     ........+.+.+...+.+.+ +.++.++.|+.|++.+.+...
T Consensus       303 ~yg~~e~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~g~~~~~~~~~  360 (503)
T d3cw9a1         303 IYGTTEAMNSLYMRQP-----KTGTEMAPGFFSEVRIVRIGG-GVDEIVANGEEGELIVAASDS  360 (503)
T ss_dssp             EEEETTTEEEEEEESC-----SSSSEEBCCTTCCEEEECTTS-CTTCBCCTTCCEEEEEECCTT
T ss_pred             cccccccceeeeeccc-----cccccccccccccceeeeeec-ccCcccCCCcccccccccccc
Confidence            9999999876655421     122222333333444444444 778999999999999887654

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=94.13  E-value=0.17  Score=39.83  Aligned_cols=103  Identities=13%  Similarity=0.044  Sum_probs=76.5

Q ss_pred             CCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc
Q 039504           23 PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ  102 (240)
Q Consensus        23 ~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~  102 (240)
                      |+.++++...+|.     .-.+|..++...+..+...+. ..+++++|++..+++....  +...+++++..|+..+...
T Consensus        25 pd~~av~~~~~g~-----~~~~Ty~el~~~~~~~A~~L~-~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vpl~   96 (534)
T d1v25a_          25 GRKEVVSRLHTGE-----VHRTTYAEVYQRARRLMGGLR-ALGVGVGDRVATLGFNHFR--HLEAYFAVPGMGAVLHTAN   96 (534)
T ss_dssp             TTCEEEEECTTSC-----EEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECC
T ss_pred             CCCeEEEEecCCc-----eEEEcHHHHHHHHHHHHHHHH-HCCcCCCCEEEEEeCCCHH--HHHHHHHHHHhCcEEEecC
Confidence            5666766655542     234788888888776665544 4578999999988886543  3346889999999998876


Q ss_pred             -CCCHHHHHHHHHhccceeeeechHHHHHHHh
Q 039504          103 -KFEIGALLELIQRHRVSVAAVVPPLVLALAK  133 (240)
Q Consensus       103 -~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~  133 (240)
                       ....+++...++..++..+.........+..
T Consensus        97 ~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~  128 (534)
T d1v25a_          97 PRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA  128 (534)
T ss_dssp             TTSCHHHHHHHHHHHTCSEEEECGGGHHHHHH
T ss_pred             CCCCHHHHHHHHHhhccccccccchhhhhHHH
Confidence             4788999999999999998887766655443

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=93.92  E-value=0.17  Score=39.54  Aligned_cols=100  Identities=12%  Similarity=0.054  Sum_probs=76.8

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .|+.+|++..  |       -.+|..++...+..+...+. ..++.++|++..+++....+  ....++++..|+..+..
T Consensus        36 ~Pd~~Al~~~--~-------~~~Ty~eL~~~v~~lA~~L~-~~Gv~~gd~Vai~~~n~~~~--v~~~la~~~~G~v~v~l  103 (514)
T d1amua_          36 RPNNVAIVCE--N-------EQLTYHELNVKANQLARIFI-EKGIGKDTLVGIMMEKSIDL--FIGILAVLKAGGAYVPI  103 (514)
T ss_dssp             CTTSEEEEET--T-------EEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEEC
T ss_pred             CCCCeEEEEC--C-------eeEcHHHHHHHHHHHHHHHH-HcCcCCcCEEEEEeCCCHHH--HHHHHHHHHhCcEEEEe
Confidence            4677777641  1       35899999888877665443 45889999999888865543  34678999999999887


Q ss_pred             c-CCCHHHHHHHHHhccceeeeechHHHHHHHh
Q 039504          102 Q-KFEIGALLELIQRHRVSVAAVVPPLVLALAK  133 (240)
Q Consensus       102 ~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~  133 (240)
                      . ....+.+...+++.+++.++........+..
T Consensus       104 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~  136 (514)
T d1amua_         104 DIEYPKERIQYILDDSQARMLLTQKHLVHLIHN  136 (514)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT
T ss_pred             CCCCCHHHHHHHHhccCCcEEEEehhhhhhhhh
Confidence            5 5888999999999999999988877776654

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=93.66  E-value=0.088  Score=40.81  Aligned_cols=94  Identities=24%  Similarity=0.207  Sum_probs=68.6

Q ss_pred             CCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc
Q 039504           23 PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ  102 (240)
Q Consensus        23 ~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~  102 (240)
                      |+.++.+.-.+|.       .+|...+...+..+...+. ..++.++|++..+++....  +...+++++..|+..+..+
T Consensus        16 pd~~al~~~~~~~-------~~Ty~el~~~~~~~a~~L~-~~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~v~vpi~   85 (503)
T d3cw9a1          16 PDHCALAVPARGL-------RLTHAELRARVEAVAARLH-ADGLRPQQRVAVVAPNSAD--VVIAILALHRLGAVPALLN   85 (503)
T ss_dssp             TTSEEEEEGGGTE-------EEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSCHH--HHHHHHHHHHHTCEEEEEC
T ss_pred             CCCeEEEECCCCc-------EEeHHHHHHHHHHHHHHHH-HcCcCCCCEEEEEeCCCHH--HHHHHHHHHHhCcEEEEeC
Confidence            4666666654442       4788888877766655443 4578999999988875443  3345788999999888875


Q ss_pred             -CCCHHHHHHHHHhccceeeeechH
Q 039504          103 -KFEIGALLELIQRHRVSVAAVVPP  126 (240)
Q Consensus       103 -~~~~~~~~~~i~~~~~t~l~~~p~  126 (240)
                       ...++++..++++.++..++....
T Consensus        86 ~~~~~~~i~~~l~~~~~~~~i~~~~  110 (503)
T d3cw9a1          86 PRLKSAELAELIKRGEMTAAVIAVG  110 (503)
T ss_dssp             TTSCHHHHHHHHHHTTCSEEEESSC
T ss_pred             CCCCHHHHHHHHHhcCCcEEEeecc
Confidence             578899999999999998876543

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=93.65  E-value=0.047  Score=43.12  Aligned_cols=89  Identities=12%  Similarity=0.063  Sum_probs=69.3

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  120 (240)
                      ..+|...+...+..+...+. ..++.++|++..+++...  .+...+++++..|+..+... ....+++...++..++++
T Consensus        46 ~~lTy~el~~~~~~lA~~L~-~~Gi~~Gd~Vai~~~ns~--e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~  122 (541)
T d1lcia_          46 VNITYAEYFEMSVRLAEAMK-RYGLNTNHRIVVCSENSL--QFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV  122 (541)
T ss_dssp             CEEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEEECSSCS--STHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred             eEeeHHHHHHHHHHHHHHHH-HcCcCCCCEEEEEeCCCH--HHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceE
Confidence            35788998888877665544 568899999998887543  33346788999999888875 588899999999999999


Q ss_pred             eeechHHHHHHHh
Q 039504          121 AAVVPPLVLALAK  133 (240)
Q Consensus       121 l~~~p~~~~~l~~  133 (240)
                      ++.....+..+.+
T Consensus       123 vi~~~~~~~~~~~  135 (541)
T d1lcia_         123 VFVSKKGLQKILN  135 (541)
T ss_dssp             EEECGGGHHHHHH
T ss_pred             Eeeeccccccchh
Confidence            9998877665544

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=93.41  E-value=0.18  Score=41.03  Aligned_cols=97  Identities=18%  Similarity=0.165  Sum_probs=71.5

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .++.+|.|.... .++.  ...+|..+|...+..+...+. ..++.+||++..++|....+-  ..+++++..|+..+..
T Consensus        85 ~~d~~Ali~~~~-~~~~--~~~~TY~eL~~~v~~~A~~L~-~~Gv~~Gd~V~i~~~n~~e~i--v~~lA~~~~Gav~v~l  158 (643)
T d1pg4a_          85 NGDRTAIIWEGD-DTSQ--SKHISYRELHRDVCRFANTLL-DLGIKKGDVVAIYMPMVPEAA--VAMLACARIGAVHSVI  158 (643)
T ss_dssp             HTTSEEEEEECS-STTC--EEEEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEEECCSSHHHH--HHHHHHHHHTCEEEEC
T ss_pred             CCCCEEEEEEec-CCCC--ceEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEecccchHHH--HHHHHHHHhCeEEEec
Confidence            356666665432 2232  235788888888877666544 568999999999998655433  3578899999988887


Q ss_pred             c-CCCHHHHHHHHHhccceeeeec
Q 039504          102 Q-KFEIGALLELIQRHRVSVAAVV  124 (240)
Q Consensus       102 ~-~~~~~~~~~~i~~~~~t~l~~~  124 (240)
                      . .+.++.+...+++.++.++++.
T Consensus       159 ~~~~~~~~l~~~l~~~~~~~li~~  182 (643)
T d1pg4a_         159 FGGFSPEAVAGCIIDSSSRLVITA  182 (643)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEEE
T ss_pred             CCCCCHHHHHHHHHhcCCCEEEEc
Confidence            5 5899999999999999988864

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.20  E-value=0.21  Score=40.40  Aligned_cols=99  Identities=20%  Similarity=0.192  Sum_probs=72.1

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .|+.+|.+... ..+|.-  ..+|..++...+..+...+...+++.+||++..++|....  +...+++++..|+..+..
T Consensus        72 ~pd~~Ali~~~-~~~g~~--~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpi  146 (640)
T d1ry2a_          72 TPNKKAIIFEG-DEPGQG--YSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPE--AIITLLAISRIGAIHSVV  146 (640)
T ss_dssp             CTTSEEEEEEC-SSTTCC--EEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHH--HHHHHHHHHHTTCEEEEC
T ss_pred             CCCCEEEEEEe-cCCCCe--eEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHH--HHHHHHHhccCceEeecC
Confidence            56777776543 223322  4678888888877766554324689999999999885443  334678999999998887


Q ss_pred             c-CCCHHHHHHHHHhccceeeeech
Q 039504          102 Q-KFEIGALLELIQRHRVSVAAVVP  125 (240)
Q Consensus       102 ~-~~~~~~~~~~i~~~~~t~l~~~p  125 (240)
                      . .+.++++...+++.++..+++..
T Consensus       147 ~~~~~~~~l~~~~~~~~~~~~~~~~  171 (640)
T d1ry2a_         147 FAGFSSNSLRDRINDGDSKVVITTD  171 (640)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred             CCCCCHHHHHHHHHhhhccccccch
Confidence            5 58889999999999998887754

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=90.58  E-value=0.42  Score=37.28  Aligned_cols=79  Identities=15%  Similarity=0.142  Sum_probs=61.8

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+. ..+++++|++..++|....  +...+++++..|+..+...+ ...+++...+++.++..+
T Consensus        50 ~~Ty~el~~~v~~~A~~L~-~~Gv~~gd~V~i~~~n~~~--~~v~~lA~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~  126 (536)
T d1mdba_          50 HWSYRELDTRADRLAAGFQ-KLGIQQKDRVVVQLPNIKE--FFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAY  126 (536)
T ss_dssp             EEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEECCCSSHH--HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEE
T ss_pred             eEcHHHHHHHHHHHHHHHH-HcCcCCcCEEEEEeCCCHH--HHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccceE
Confidence            5899999888877665443 4578999999988886543  33467899999999988754 788899999999998877


Q ss_pred             eec
Q 039504          122 AVV  124 (240)
Q Consensus       122 ~~~  124 (240)
                      +..
T Consensus       127 ~~~  129 (536)
T d1mdba_         127 IIP  129 (536)
T ss_dssp             EEE
T ss_pred             ecc
Confidence            664

>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methionine synthase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.52  E-value=1.2  Score=28.81  Aligned_cols=91  Identities=16%  Similarity=0.149  Sum_probs=57.7

Q ss_pred             cCCcEEEEecch-HHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceeeeechH------HHHHHHhCCCCC
Q 039504           67 TNGDVVLCVLPL-FHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVAAVVPP------LVLALAKNPMVA  138 (240)
Q Consensus        67 ~~~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~------~~~~l~~~~~~~  138 (240)
                      +.+.+++.+.+- .|..|....-...-..|..++... ...++++++.++++++.++..+..      .++.+.+..+..
T Consensus         5 ~~gkivi~tv~gD~HdiG~~iv~~~l~~~G~~Vi~LG~~~p~e~~~~~~~~~~~d~i~lS~l~~~~~~~~~~~~~~l~~~   84 (156)
T d3bula2           5 TNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQ   84 (156)
T ss_dssp             CSCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHHHHHHT
T ss_pred             cCCEEEEEeeCCChhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhhCCCEEEEecccccchHHHHHHHHHHHhc
Confidence            456666655553 677777644445556788877765 588999999999999998776432      222333322222


Q ss_pred             CCCccchhhhhccCCCCCHHHHH
Q 039504          139 DYDLSSIRVVLSGAAPLGKELED  161 (240)
Q Consensus       139 ~~~~~~lr~v~~~G~~~~~~~~~  161 (240)
                      +.   +. .+++||.+++.+...
T Consensus        85 g~---~~-~vivGG~~~~~~~~~  103 (156)
T d3bula2          85 GF---TI-PLLIGGATTSKAHTA  103 (156)
T ss_dssp             TC---CS-CEEEESTTCCHHHHH
T ss_pred             cc---cc-eEEEecccccchHHH
Confidence            21   12 367889888876544