Citrus Sinensis ID: 039534

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
Protein Sequence
MAGTSTNLSRHLLCSMHSSSSSYYYNSKQTKSSSTPGKFRIFNRRNLTCSARLKSAPHKKKTASTSLQTSPPDPSRFSLSGSFSLINIIARLSDGFKFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIPWLVIRSV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHcEcccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEc
Coil and Loop (DISEMBL)
magtstnlSRHLLCSmhsssssyyynskqtkssstpgkfrifnrrnltcsarlksaphkkktastslqtsppdpsrfslsgsfSLINIIARLsdgfkfdelGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAvksqgsddgssqiDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSfgsgflmnimgipadspmrvpaenflnlrafgapPIVIALAAQGafrgfmdtktplyaigagnlinaiLDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLsdnvllmspdidgrRVVHYLKSGGLLIGRTIAVLLTMTLATSmaaregpipwlvirsv
Flexible Loop (DISEMBL)
magtstnlsrhlLCSMHSSSSSYYYNSkqtkssstpgkfrifnrRNLTcsarlksaphkkktastslqtsppdpsrfslSGSFSLINIIARLSDGFKFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLAtsmaaregpipwlvirsv
Low Complexity Region (SEG)
MAGTSTNLSRHLLCSMHsssssyyynskqtkssstPGKFRIFNRRNLTCSARLKSAPHKKKTASTSLQTSPPDPSRFSLSGSFSLINIIARLSDGFKFDELGLEIWsialpaalalaadpiaslidTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKsqgsddgssqIDHGVEQQGKKLLPSISTSlalaagigiaealalSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILifffhfgiggaaiaTVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIPWLVIRSV
Disordered region (IsUnstruct)
*****************************************F**************************************GSFSLINIIARLSDGFKFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVA******************************SISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIPWLVI***
Disordered Region (DISOPRED)
****************************************************************************************************L**EIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAV**************GVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIPWLVIRSV
Disordered Region (DISEMBL)
MAGTSTNLSRHLLCSMHS*****************PGKFRIFNRRNLTCSAR************************FSLSGSFSLINIIARLSDGFKFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEE*********************QGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIPWLVIRSV
Disordered Region (DISPRO)
******NLSRHLLCSMHSSSSS*Y********************************************************GSFSLINIIARLSDGFKFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIPWLVIRSV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGTSTNLSRHLLCSMHSSSSSYYYNSKQTKSSSTPGKFRIFNRRNLTCSARLKSAPHKKKTASTSLQTSPPDPSRFSLSGSFSLINIIARLSDGFKFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIPWLVIRSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	380	2.2.26 [Sep-21-2011]
Q84K71	521	MATE efflux family protei	yes	no	0.807	0.589	0.630	1e-100
Q9SVE7	560	MATE efflux family protei	no	no	0.7	0.475	0.503	3e-67
Q9SYD6	515	MATE efflux family protei	no	no	0.721	0.532	0.451	5e-58
Q9SFB0	526	MATE efflux family protei	no	no	0.752	0.543	0.421	4e-51
Q8W4G3	559	MATE efflux family protei	no	no	0.497	0.338	0.317	6e-14
Q945F0	543	Enhanced disease suscepti	no	no	0.497	0.348	0.284	6e-10
Q9WZS2	464	Probable multidrug resist	no	no	0.515	0.422	0.274	5e-06
Q58119	450	Uncharacterized transport	yes	no	0.460	0.388	0.306	8e-06
O34474	463	Probable multidrug resist	yes	no	0.344	0.282	0.297	0.0003
P76352	495	Uncharacterized transport	N/A	no	0.531	0.408	0.285	0.0004

>sp|Q84K71|MATE2_ARATH MATE efflux family protein 2, chloroplastic OS=Arabidopsis thaliana GN=DTX44 PE=2 SV=1

 Score =  365 bits (938), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/333 (63%), Positives = 251/333 (75%), Gaps = 26/333 (7%)

Query: 44  RRNLTCSARLKSAPHKKKTA-STSLQTSPPDPSRFSLSGSFSLINIIARLSDGFKFD--- 99
           RR + C    KS+P  +  A STS Q   P+  +  L+          +     K D   
Sbjct: 27  RRTIVC----KSSPRDESPAVSTSSQR--PEKQQNPLTSQ-------NKPDHDHKPDPGI 73

Query: 100 -ELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVP 158
            ++G+EI SIALPAALALAADPI SL+DTAFVGH+GS ELAAVGVSVSVFNLVSKLFNVP
Sbjct: 74  GKIGMEIMSIALPAALALAADPITSLVDTAFVGHIGSAELAAVGVSVSVFNLVSKLFNVP 133

Query: 159 LLNITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALAL 218
           LLN+TTSFVAEEQA+ ++  +D          +  KK+LPS+STSL LAAG+GIAEA+AL
Sbjct: 134 LLNVTTSFVAEEQAIAAKDDNDSI--------ETSKKVLPSVSTSLVLAAGVGIAEAIAL 185

Query: 219 SFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAI 278
           S GS FLM++M IP DSPMR+PAE FL LRA+GAPPIV+ALAAQGAFRGF DT TPLYA+
Sbjct: 186 SLGSDFLMDVMAIPFDSPMRIPAEQFLRLRAYGAPPIVVALAAQGAFRGFKDTTTPLYAV 245

Query: 279 GAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRV 338
            AGN++NA+LDPILIF   FGI GAA ATVISEYLIAFIL+WKL++NV+L+SP I   R 
Sbjct: 246 VAGNVLNAVLDPILIFVLGFGISGAAAATVISEYLIAFILLWKLNENVVLLSPQIKVGRA 305

Query: 339 VHYLKSGGLLIGRTIAVLLTMTLATSMAAREGP 371
             YLKSGGLLIGRT+A+L+  TLATS+AA+ GP
Sbjct: 306 NQYLKSGGLLIGRTVALLVPFTLATSLAAQNGP 338

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVE7|MATE3_ARATH MATE efflux family protein 3, chloroplastic OS=Arabidopsis thaliana GN=DTX45 PE=2 SV=2

 Score =  256 bits (653), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 136/270 (50%), Positives = 187/270 (69%), Gaps = 4/270 (1%)

Query: 104 EIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNIT 163
           E+  ++LPA    A DP+  L++TA++G LGSVEL + GVS+++FN +SKLFN+PLL++ 
Sbjct: 108 ELVMLSLPAIAGQAIDPLTLLMETAYIGRLGSVELGSAGVSMAIFNTISKLFNIPLLSVA 167

Query: 164 TSFVAEEQAVKSQGSDDGSSQIDHGVEQQG---KKLLPSISTSLALAAGIGIAEALALSF 220
           TSFVAE+ A K    D  S      +  QG   +K L S+ST+L LA GIGI EALALS 
Sbjct: 168 TSFVAEDIA-KIAAQDLASEDSQSDIPSQGLPERKQLSSVSTALVLAIGIGIFEALALSL 226

Query: 221 GSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGA 280
            SG  + +MGI + S M +PA  FL LRA GAP  V++LA QG FRGF DTKTP+Y +G 
Sbjct: 227 ASGPFLRLMGIQSMSEMFIPARQFLVLRALGAPAYVVSLALQGIFRGFKDTKTPVYCLGI 286

Query: 281 GNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVH 340
           GN +   L P+ I+ F  G+ GAAI++VIS+Y +A +++  L+  V+L+ P I   +   
Sbjct: 287 GNFLAVFLFPLFIYKFRMGVAGAAISSVISQYTVAILMLILLNKRVILLPPKIGSLKFGD 346

Query: 341 YLKSGGLLIGRTIAVLLTMTLATSMAAREG 370
           YLKSGG ++GRT++VL+TMT+ATSMAAR+G
Sbjct: 347 YLKSGGFVLGRTLSVLVTMTVATSMAARQG 376

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYD6|MATE1_ARATH MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2 SV=2

 Score =  225 bits (573), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 140/310 (45%), Positives = 191/310 (61%), Gaps = 36/310 (11%)

Query: 97  KFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFN 156
           KFDELGLEI  IALPAALAL ADPIASL+DTAF+G +G VELAAVGVS+++FN VS++  
Sbjct: 28  KFDELGLEIARIALPAALALTADPIASLVDTAFIGQIGPVELAAVGVSIALFNQVSRIAI 87

Query: 157 VPLLNITTSFVAEEQAVKSQGSD--DGSSQIDHGVEQ----------------------- 191
            PL++ITTSFVAEE A  SQ     D    I+ G+                         
Sbjct: 88  FPLVSITTSFVAEEDACSSQQDTVRDHKECIEIGINNPTEETIELIPEKHKDSLSDEFKT 147

Query: 192 -----------QGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVP 240
                        K+ +PS S++L +   +G+ +A+ L   +  L++ MG+  DSPM  P
Sbjct: 148 SSSIFSISKPPAKKRNIPSASSALIIGGVLGLFQAVFLISAAKPLLSFMGVKHDSPMMRP 207

Query: 241 AENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGI 300
           ++ +L+LR+ GAP ++++LAAQG FRGF DT TPL+A   G++ N ILDPI IF F  G+
Sbjct: 208 SQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILDPIFIFVFRLGV 267

Query: 301 GGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHYLKSGGLLIGRTIAVLLTMT 360
            GAA A VIS+YL+  IL+WKL   V + +      +   ++K+G LL+ R IAV   +T
Sbjct: 268 TGAATAHVISQYLMCGILLWKLMGQVDIFNMSTKHLQFCRFMKNGFLLLMRVIAVTFCVT 327

Query: 361 LATSMAAREG 370
           L+ S+AAREG
Sbjct: 328 LSASLAAREG 337

Citrate transporter critical for aluminum tolerance. Responsible for citrate exudation into the rhizosphere to protect roots from aluminum toxicity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SFB0|FRD3_ARATH MATE efflux family protein FRD3 OS=Arabidopsis thaliana GN=FRD3 PE=1 SV=1

 Score =  202 bits (513), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 137/325 (42%), Positives = 189/325 (58%), Gaps = 39/325 (12%)

Query: 88  IIARLSDGFKFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSV 147
           I   L   F  D  G EI  IA PAALALAADPIASLIDTAFVG LG+V+LAAVGVS+++
Sbjct: 20  IFKDLRHVFSRDTTGREILGIAFPAALALAADPIASLIDTAFVGRLGAVQLAAVGVSIAI 79

Query: 148 FNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQIDH------------GV------ 189
           FN  S++   PL+++TTSFVAEE  ++    +   + + H            G+      
Sbjct: 80  FNQASRITIFPLVSLTTSFVAEEDTMEKMKEEANKANLVHAETILVQDSLEKGISSPTSN 139

Query: 190 ---------------------EQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNI 228
                                 ++ K+ + + ST++ L   +G+ +A+ L F S  L+ +
Sbjct: 140 DTNQPQQPPAPDTKSNSGNKSNKKEKRTIRTASTAMILGLILGLVQAIFLIFSSKLLLGV 199

Query: 229 MGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAIL 288
           MG+  +SPM  PA  +L++RA GAP ++++LA QG FRGF DTKTPL+A    ++IN +L
Sbjct: 200 MGVKPNSPMLSPAHKYLSIRALGAPALLLSLAMQGIFRGFKDTKTPLFATVVADVINIVL 259

Query: 289 DPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHYLKSGGLL 348
           DPI IF    GI GAAIA VIS+Y +  IL   L+  V L+ P+    +   +LK+G LL
Sbjct: 260 DPIFIFVLRLGIIGAAIAHVISQYFMTLILFVFLAKKVNLIPPNFGDLQFGRFLKNGLLL 319

Query: 349 IGRTIAVLLTMTLATSMAAREGPIP 373
           + RTIAV    TLA +MAAR G  P
Sbjct: 320 LARTIAVTFCQTLAAAMAARLGTTP 344

Citrate transporter responsible for loading citrate into xylem tissues, which helps facilitate iron transport to shoots.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4G3|MATE4_ARATH MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana GN=DTX46 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 103/211 (48%), Gaps = 22/211 (10%)

Query: 111 PAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEE 170
           PAA      P+ SLIDTA +G   S+ELAA+G +  + + +   F    L++ TS +   
Sbjct: 125 PAAGLWLCGPLMSLIDTAVIGQGSSLELAALGPATVICDYLCYTFM--FLSVATSNLVAT 182

Query: 171 QAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMG 230
              + Q  D+   QI             SI   + LA G+ +   L   FGS  L    G
Sbjct: 183 SLAR-QDKDEVQHQI-------------SILLFIGLACGVTMM-VLTRLFGSWALTAFTG 227

Query: 231 IP-ADSPMRVPAEN-FLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAIL 288
           +  AD    VPA N ++ +R    P ++I   AQ A  G  D+  PL A+   + IN + 
Sbjct: 228 VKNAD---IVPAANKYVQIRGLAWPAVLIGWVAQSASLGMKDSWGPLKALAVASAINGVG 284

Query: 289 DPILIFFFHFGIGGAAIATVISEYLIAFILI 319
           D +L  F  +GI GAA AT++S+ + A++++
Sbjct: 285 DVVLCTFLGYGIAGAAWATMVSQVVAAYMMM 315

Arabidopsis thaliana (taxid: 3702)

>sp|Q945F0|EDS5_ARATH Enhanced disease susceptibility 5 OS=Arabidopsis thaliana GN=EDS5 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 97/225 (43%), Gaps = 36/225 (16%)

Query: 104 EIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNIT 163
           EI     PA       P+ SLIDT  +G   S+ELAA+G    + + +S +F    L++ 
Sbjct: 101 EIVKFTGPAMGMWICGPLMSLIDTVVIGQGSSIELAALGPGTVLCDHMSYVFM--FLSVA 158

Query: 164 TSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGI---------GIAE 214
           TS +      K Q   +   QI             S+   + L  G+         G   
Sbjct: 159 TSNMVATSLAK-QDKKEAQHQI-------------SVLLFIGLVCGLMMLLLTRLFGPWA 204

Query: 215 ALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTP 274
             A + G     NI  +PA       A  ++ +R    P I++ L AQ A  G  ++  P
Sbjct: 205 VTAFTRGK----NIEIVPA-------ANKYIQIRGLAWPFILVGLVAQSASLGMKNSWGP 253

Query: 275 LYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILI 319
           L A+ A  +IN + D IL  F   GI GAA AT  S+ + A++++
Sbjct: 254 LKALAAATIINGLGDTILCLFLGQGIAGAAWATTASQIVSAYMMM 298

Plays an essential function in the salicylic acid-dependent pathway of plant defense against pathogens. Might be part of the functional mechanism for the induction of salicylic acid biosynthesis. Might be a transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9WZS2|NORM_THEMA Probable multidrug resistance protein NorM OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=norM PE=3 SV=1

 Score = 52.8 bits (125), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 30/226 (13%)

Query: 100 ELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPL 159
           E+  E+  +ALPA        +  + DTAF+GH     ++ VG+S  VF +V        
Sbjct: 17  EIRKELIKLALPAMGENVLQMLFGMADTAFLGHYSWKAMSGVGLSNQVFWVV-------- 68

Query: 160 LNITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSI---STSLALAAGIGIAEAL 216
                      Q V    S   +  I + +    +K + S+   S  LA+  G+ +    
Sbjct: 69  -----------QVVLIAASMGATVTIANAIGAGNRKAVRSLAWNSVFLAIFTGVILT--- 114

Query: 217 ALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLY 276
           AL+  S  L+NI     +  +   A+ +L +   G+    I        RG  DT+TP+ 
Sbjct: 115 ALTPLSDVLINIFP-NLEGEIESSAKEYLKVILSGSMGFSIMAVFSAMLRGAGDTRTPMI 173

Query: 277 AIGAGNLINAILDPILIF----FFHFGIGGAAIATVISEYLIAFIL 318
             G  N +N  LD  +IF    F   G+ GAA+AT++S ++ A IL
Sbjct: 174 VTGLTNFLNIFLDYAMIFGKFGFPEMGVRGAAVATILSRFVGAGIL 219

Multidrug efflux pump.

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

>sp|Q58119|Y709_METJA Uncharacterized transporter MJ0709 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0709 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 93/199 (46%), Gaps = 24/199 (12%)

Query: 111 PAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPL-LNI-TTSFVA 168
           P  +A   + I SL+D+ +V  LG+  LAAVG S   F ++  ++ V   L+I  +S +A
Sbjct: 21  PIIVATFIESIYSLVDSIWVSGLGADALAAVGAS---FPILISIYAVSWGLSIGISSGIA 77

Query: 169 EEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNI 228
                K++   D  +  +H +              LAL AGI    A+  +  +  L ++
Sbjct: 78  RRVGAKNKEEADKVA--NHAI-------------ILALIAGILYIIAVYPNLDT--LFSL 120

Query: 229 MGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAIL 288
           MG   D   +  A  + ++   G     I  A  G FRG  +TK  + A   G L N IL
Sbjct: 121 MGTYGDC--KSLAIKYSSILVLGTVIFTICDALYGIFRGEGNTKIVMIASVIGTLTNIIL 178

Query: 289 DPILIFFFHFGIGGAAIAT 307
           DPI I+  + GI GA+ AT
Sbjct: 179 DPIFIYMLNLGISGASYAT 197

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|O34474|YOEA_BACSU Probable multidrug resistance protein YoeA OS=Bacillus subtilis (strain 168) GN=yoeA PE=3 SV=2

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 10/141 (7%)

Query: 177 GSDDGSSQI---DHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPA 233
           G   GSS +    +G + + ++L   + T+L     +G+  A+  S  +  ++ +MG P 
Sbjct: 75  GIGSGSSILIGQAYGAKNE-ERLKAVVGTTLTFTFLLGVVLAVIGSIFTLDILRLMGTP- 132

Query: 234 DSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILI 293
           ++ + V A N+  +  +  P + +  A     RG  D+KTP Y +    +IN  L P+LI
Sbjct: 133 ENVIHVSA-NYARILFYAMPFMFLYFAYTTFLRGTGDSKTPFYTLIVSTVINIALLPVLI 191

Query: 294 F----FFHFGIGGAAIATVIS 310
                F   GI G+A ATVIS
Sbjct: 192 LGMFGFPKLGIYGSAYATVIS 212

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P76352|YEEO_ECOLI Uncharacterized transporter YeeO OS=Escherichia coli (strain K12) GN=yeeO PE=3 SV=3

 Score = 46.2 bits (108), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 98/224 (43%), Gaps = 22/224 (9%)

Query: 104 EIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNIT 163
           EI  +A+P  +  A   +  ++ T  V  LG   +A VG++ S FN+V   F   +   T
Sbjct: 41  EITPLAVPIFMENACVLLMGVLSTFLVSWLGKDAMAGVGLADS-FNMVIMAFFAAIDLGT 99

Query: 164 TSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSG 223
           T  VA      S G  D   +      +Q   ++   +  LA          L   FG  
Sbjct: 100 TVVVAF-----SLGKRD--RRRARVATRQSLVIMTLFAVLLA---------TLIHHFGEQ 143

Query: 224 FLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNL 283
            +  + G  A + ++  A  +L L     P   I L   GA RG  +TK PL   G+ N+
Sbjct: 144 IIDFVAG-DATTEVKALALTYLELTVLSYPAAAITLIGSGALRGAGNTKIPLLINGSLNI 202

Query: 284 INAILDPILIF--FFHFGIG--GAAIATVISEYLIAFILIWKLS 323
           +N I+  ILI+  F   G+G  GA +   IS Y+ A  ++W L+
Sbjct: 203 LNIIISGILIYGLFSWPGLGFVGAGLGLTISRYIGAVAILWVLA 246

Escherichia coli (strain K12) (taxid: 83333)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
297735614	558	unnamed protein product [Vitis vinifera]	0.926	0.630	0.671	1e-119
359481267	561	PREDICTED: MATE efflux family protein 2,	0.926	0.627	0.664	1e-118
255571463	560	DNA-damage-inducible protein f, putative	0.934	0.633	0.671	1e-118
449461751	557	PREDICTED: MATE efflux family protein 2,	0.857	0.585	0.669	1e-100
356523356	535	PREDICTED: MATE efflux family protein 2,	0.778	0.553	0.692	1e-100
30687474	521	MATE efflux family protein [Arabidopsis	0.807	0.589	0.630	1e-98
3395439	539	hypothetical protein [Arabidopsis thalia	0.810	0.571	0.620	2e-98
297823717	543	mate efflux family protein [Arabidopsis	0.789	0.552	0.592	8e-97
357506191	566	MATE efflux family protein expressed [Me	0.726	0.487	0.719	3e-96
357153194	687	PREDICTED: MATE efflux family protein 2,	0.736	0.407	0.651	4e-96

>gi|297735614|emb|CBI18108.3| unnamed protein product [Vitis vinifera]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 262/390 (67%), Positives = 293/390 (75%), Gaps = 38/390 (9%)

Query: 5   STNLSRHLLCSMHSSSSSYYYNSKQTKSSSTPGKFRIFNRRNLTCSARLKSAPHK--KKT 62
           ++  S HLLC            S  T  SS   K       N  C+ R+++ P    +K 
Sbjct: 2   ASRFSHHLLC----------IRSPYTSPSSNSPKLV----TNPNCAVRVRAVPRTSPRKN 47

Query: 63  ASTSLQTS------PPDPSR-----------FSLSGSFSLINIIARLSDGFKFDELGLEI 105
            STSL+TS      P    R            +L GSFS++  I RL DGF  DELGLEI
Sbjct: 48  PSTSLETSSKELKHPISSKRGDRSDSNSSSVSTLFGSFSVL--IRRLRDGFGADELGLEI 105

Query: 106 WSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTS 165
            SIALPAALALAADPIASL+DTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTS
Sbjct: 106 LSIALPAALALAADPIASLVDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTS 165

Query: 166 FVAEEQAVKSQGSDDGSSQI--DHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSG 223
           FVAEEQA+ S+ S++ S QI  DH    + K LLPS+STSLALAAGIGIAEA+ALS GSG
Sbjct: 166 FVAEEQALVSK-SENESIQIGQDHVNGHKRKMLLPSVSTSLALAAGIGIAEAVALSVGSG 224

Query: 224 FLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNL 283
           FLMNIMGIP DSPMRVPAE FL LRAFGAPPIVIALAAQG FRGF DTKTPLYA+GAGNL
Sbjct: 225 FLMNIMGIPVDSPMRVPAEQFLTLRAFGAPPIVIALAAQGTFRGFKDTKTPLYAVGAGNL 284

Query: 284 INAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHYLK 343
           +NAILDPILIF    GIGGAAI+TVISEYLIAF+L+W+L+D V L+SP+IDG R+  YLK
Sbjct: 285 LNAILDPILIFLLGLGIGGAAISTVISEYLIAFVLLWELNDKVFLISPNIDGMRIAQYLK 344

Query: 344 SGGLLIGRTIAVLLTMTLATSMAAREGPIP 373
           SGGLLIGRT+AVL TMTLATSMAA+EGPIP
Sbjct: 345 SGGLLIGRTLAVLATMTLATSMAAKEGPIP 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481267|ref|XP_002264433.2| PREDICTED: MATE efflux family protein 2, chloroplastic [Vitis vinifera]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 261/393 (66%), Positives = 292/393 (74%), Gaps = 41/393 (10%)

Query: 5   STNLSRHLLCSMHSSSSSYYYNSKQTKSSSTPGKFRIFNRRNLTCSARLKSAPHK--KKT 62
           ++  S HLLC            S  T  SS   K       N  C+ R+++ P    +K 
Sbjct: 2   ASRFSHHLLC----------IRSPYTSPSSNSPKLV----TNPNCAVRVRAVPRTSPRKN 47

Query: 63  ASTSLQTS------PPDPSR-----------FSLSGSFSLINIIARLSDGFKFDELGLEI 105
            STSL+TS      P    R            +L GSFS++  I RL DGF  DELGLEI
Sbjct: 48  PSTSLETSSKELKHPISSKRGDRSDSNSSSVSTLFGSFSVL--IRRLRDGFGADELGLEI 105

Query: 106 WSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTS 165
            SIALPAALALAADPIASL+DTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTS
Sbjct: 106 LSIALPAALALAADPIASLVDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTS 165

Query: 166 FVAEEQAVKSQGSDDGSSQIDHGV-----EQQGKKLLPSISTSLALAAGIGIAEALALSF 220
           FVAEEQA+ S+ S++ S QI  G        + K LLPS+STSLALAAGIGIAEA+ALS 
Sbjct: 166 FVAEEQALVSK-SENESIQIGQGTFYHVNGHKRKMLLPSVSTSLALAAGIGIAEAVALSV 224

Query: 221 GSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGA 280
           GSGFLMNIMGIP DSPMRVPAE FL LRAFGAPPIVIALAAQG FRGF DTKTPLYA+GA
Sbjct: 225 GSGFLMNIMGIPVDSPMRVPAEQFLTLRAFGAPPIVIALAAQGTFRGFKDTKTPLYAVGA 284

Query: 281 GNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVH 340
           GNL+NAILDPILIF    GIGGAAI+TVISEYLIAF+L+W+L+D V L+SP+IDG R+  
Sbjct: 285 GNLLNAILDPILIFLLGLGIGGAAISTVISEYLIAFVLLWELNDKVFLISPNIDGMRIAQ 344

Query: 341 YLKSGGLLIGRTIAVLLTMTLATSMAAREGPIP 373
           YLKSGGLLIGRT+AVL TMTLATSMAA+EGPIP
Sbjct: 345 YLKSGGLLIGRTLAVLATMTLATSMAAKEGPIP 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571463|ref|XP_002526679.1| DNA-damage-inducible protein f, putative [Ricinus communis] gi|223533979|gb|EEF35701.1| DNA-damage-inducible protein f, putative [Ricinus communis]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 260/387 (67%), Positives = 301/387 (77%), Gaps = 32/387 (8%)

Query: 4   TSTNLSRHLLCSMHSSSSSYYYNSKQTKSSSTPGKFRIFNRRNLTCSARLK-SAP---HK 59
           T+  LS++L+ ++HS  S+Y +   Q+  +  P            CS RL+ +AP   HK
Sbjct: 3   TTILLSQNLV-TVHSFQSNYTFPKSQSLIT-IP-----------KCSVRLRPTAPKSSHK 49

Query: 60  KKTASTSL---------QTSPPDPSRFSLSGSFSLINIIARLSDGFKFDELGLEIWSIAL 110
           K T STSL         +   P PS  SL  SFS    ++RL DGF+ DE+G+EI SIAL
Sbjct: 50  KTTTSTSLETELKPSVSREQEPTPSTSSLLHSFS--RFVSRLRDGFRVDEIGIEILSIAL 107

Query: 111 PAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEE 170
           PAALALAADPIASL+DTAF+GH G+VELAAVGVSVSVFNLVSKLFNVPLLN+TTSFVAEE
Sbjct: 108 PAALALAADPIASLVDTAFIGHTGAVELAAVGVSVSVFNLVSKLFNVPLLNVTTSFVAEE 167

Query: 171 QAVKSQGSDDGSSQIDHGV----EQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLM 226
           QA+ S+   + +S I   +    ++QGK  LP++STSLALAAG+GIAEA+AL FGSGFLM
Sbjct: 168 QALLSKAKANNTSGIIISLYFENQEQGKAYLPAVSTSLALAAGVGIAEAIALFFGSGFLM 227

Query: 227 NIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINA 286
           NIMGIP DSPMR+PAENFL  RAFGAPPIVIALAAQG FRGF DTKTPLYAIGAGNL+NA
Sbjct: 228 NIMGIPVDSPMRIPAENFLTWRAFGAPPIVIALAAQGTFRGFKDTKTPLYAIGAGNLLNA 287

Query: 287 ILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHYLKSGG 346
           ILDPILIF F FGIGGAAIATV SEYLIAF+L+W+L+  V L+SP+IDGRRVV YL SGG
Sbjct: 288 ILDPILIFTFGFGIGGAAIATVTSEYLIAFVLLWELNGKVSLISPNIDGRRVVSYLNSGG 347

Query: 347 LLIGRTIAVLLTMTLATSMAAREGPIP 373
           LLIGRTIAVLLTMTLATSMAAREGPIP
Sbjct: 348 LLIGRTIAVLLTMTLATSMAAREGPIP 374

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461751|ref|XP_004148605.1| PREDICTED: MATE efflux family protein 2, chloroplastic-like [Cucumis sativus] gi|449518737|ref|XP_004166392.1| PREDICTED: MATE efflux family protein 2, chloroplastic-like [Cucumis sativus]

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 225/336 (66%), Positives = 259/336 (77%), Gaps = 10/336 (2%)

Query: 44  RRNLTCSARLKSAPHKKKTASTSLQTSPPDPSRFSLSGSFSLINIIARLSDG-FKFDELG 102
            RNLT S+ LKS   + K+  +S Q  P  P   S S SF L   + R  D  FKFDEL 
Sbjct: 44  HRNLTTSS-LKSPLEESKSTPSSDQVPPNRPDNNS-SKSF-LSASVNRFRDAAFKFDELA 100

Query: 103 LEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNI 162
           L+I +IALPAALALAADPIASLIDTAFVGH+GS ELAA+GVS SVFNLVSKLFNVPLLNI
Sbjct: 101 LDILAIALPAALALAADPIASLIDTAFVGHIGSTELAAIGVSASVFNLVSKLFNVPLLNI 160

Query: 163 TTSFVAEEQAVKSQGSDDGSSQID-----HGVEQQGKKLLPSISTSLALAAGIGIAEALA 217
           TTSFVAEEQA+ +   +    Q D      G + + KKLL S+STSLALA G+GIAEA+ 
Sbjct: 161 TTSFVAEEQALIN-ADEKNIVQTDIGNYTFGFKTREKKLLSSVSTSLALATGLGIAEAVM 219

Query: 218 LSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYA 277
           LS GSG LM+IMGIP DS MR PAE FL+LRAFGAPPIVIALAAQG FRGF DTKTPLYA
Sbjct: 220 LSLGSGTLMDIMGIPVDSSMRAPAEQFLSLRAFGAPPIVIALAAQGTFRGFKDTKTPLYA 279

Query: 278 IGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRR 337
             AGNL+NA+LDP+LIFF  FGIGGAAIATVISEYLIAF+L+W+L+  +      IDG R
Sbjct: 280 TAAGNLLNAVLDPLLIFFCGFGIGGAAIATVISEYLIAFVLLWRLNGEISFTLSSIDGGR 339

Query: 338 VVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIP 373
           +  YL+SGGLL+ RT+AVL+T+TLATSMAAREGP+P
Sbjct: 340 IARYLQSGGLLMARTLAVLVTLTLATSMAAREGPVP 375

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523356|ref|XP_003530306.1| PREDICTED: MATE efflux family protein 2, chloroplastic-like [Glycine max]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/309 (69%), Positives = 247/309 (79%), Gaps = 13/309 (4%)

Query: 66  SLQTSPPDPSRFSLSGSFSLINIIARLSDG-FKFDELGLEIWSIALPAALALAADPIASL 124
           SLQ S P P   S S      +++   S+G FKFDELG+EI  IALPAALALAADPIASL
Sbjct: 59  SLQPSSPKPPYNSSS------SLLRHFSNGWFKFDELGMEIVLIALPAALALAADPIASL 112

Query: 125 IDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQ 184
           IDTAFVGH+G+VELAAVGVS SVFNLVSK FNVPLLN+TTSFVAEEQA+  +  +    +
Sbjct: 113 IDTAFVGHIGAVELAAVGVSASVFNLVSKAFNVPLLNVTTSFVAEEQALIRKEEESILRK 172

Query: 185 IDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENF 244
                  Q KKLLPS+STSLALAA +GIAE + L+ GSG LMNIMGIPADSPMR PAE F
Sbjct: 173 ------DQSKKLLPSVSTSLALAATLGIAETVVLTLGSGILMNIMGIPADSPMRGPAEQF 226

Query: 245 LNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAA 304
           L LRAFGAP IV+ALAAQG FRGF+DTKTPLYA+G GN +NAILDPILIF F  GIGGAA
Sbjct: 227 LTLRAFGAPAIVLALAAQGTFRGFLDTKTPLYAVGVGNFLNAILDPILIFLFGLGIGGAA 286

Query: 305 IATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATS 364
           +ATVISEYLIAFIL+WKLSD VLL+  + DGR+   YLKSGGL+  RT+AV +T+TL+TS
Sbjct: 287 VATVISEYLIAFILLWKLSDKVLLIPSEFDGRKFFSYLKSGGLVSARTLAVFITVTLSTS 346

Query: 365 MAAREGPIP 373
           +AA++GPIP
Sbjct: 347 VAAQQGPIP 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30687474|ref|NP_181367.2| MATE efflux family protein [Arabidopsis thaliana] gi|75146798|sp|Q84K71.1|MATE2_ARATH RecName: Full=MATE efflux family protein 2, chloroplastic; AltName: Full=Protein DTX44; Flags: Precursor gi|28393220|gb|AAO42040.1| unknown protein [Arabidopsis thaliana] gi|28973233|gb|AAO63941.1| unknown protein [Arabidopsis thaliana] gi|330254430|gb|AEC09524.1| MATE efflux family protein [Arabidopsis thaliana]

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 210/333 (63%), Positives = 251/333 (75%), Gaps = 26/333 (7%)

Query: 44  RRNLTCSARLKSAPHKKKTA-STSLQTSPPDPSRFSLSGSFSLINIIARLSDGFKFD--- 99
           RR + C    KS+P  +  A STS Q   P+  +  L+          +     K D   
Sbjct: 27  RRTIVC----KSSPRDESPAVSTSSQR--PEKQQNPLTSQ-------NKPDHDHKPDPGI 73

Query: 100 -ELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVP 158
            ++G+EI SIALPAALALAADPI SL+DTAFVGH+GS ELAAVGVSVSVFNLVSKLFNVP
Sbjct: 74  GKIGMEIMSIALPAALALAADPITSLVDTAFVGHIGSAELAAVGVSVSVFNLVSKLFNVP 133

Query: 159 LLNITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALAL 218
           LLN+TTSFVAEEQA+ ++  +D          +  KK+LPS+STSL LAAG+GIAEA+AL
Sbjct: 134 LLNVTTSFVAEEQAIAAKDDNDSI--------ETSKKVLPSVSTSLVLAAGVGIAEAIAL 185

Query: 219 SFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAI 278
           S GS FLM++M IP DSPMR+PAE FL LRA+GAPPIV+ALAAQGAFRGF DT TPLYA+
Sbjct: 186 SLGSDFLMDVMAIPFDSPMRIPAEQFLRLRAYGAPPIVVALAAQGAFRGFKDTTTPLYAV 245

Query: 279 GAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRV 338
            AGN++NA+LDPILIF   FGI GAA ATVISEYLIAFIL+WKL++NV+L+SP I   R 
Sbjct: 246 VAGNVLNAVLDPILIFVLGFGISGAAAATVISEYLIAFILLWKLNENVVLLSPQIKVGRA 305

Query: 339 VHYLKSGGLLIGRTIAVLLTMTLATSMAAREGP 371
             YLKSGGLLIGRT+A+L+  TLATS+AA+ GP
Sbjct: 306 NQYLKSGGLLIGRTVALLVPFTLATSLAAQNGP 338

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3395439|gb|AAC28771.1| hypothetical protein [Arabidopsis thaliana]

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 206/332 (62%), Positives = 251/332 (75%), Gaps = 24/332 (7%)

Query: 44  RRNLTCSARLKSAPHKKKTASTSLQTSPPDPSRFSLSGSFSLINIIARLSDGFKFD---- 99
           RR + C    KS+P + ++ + S  +  P+  +  L+          +     K D    
Sbjct: 27  RRTIVC----KSSP-RDESPAVSTSSQRPEKQQNPLTSQ-------NKPDHDHKPDPGIG 74

Query: 100 ELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPL 159
           ++G+EI SIALPAALALAADPI SL+DTAFVGH+GS ELAAVGVSVSVFNLVSKLFNVPL
Sbjct: 75  KIGMEIMSIALPAALALAADPITSLVDTAFVGHIGSAELAAVGVSVSVFNLVSKLFNVPL 134

Query: 160 LNITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALS 219
           LN+TTSFVAEEQA+ ++  +D          +  KK+LPS+STSL LAAG+GIAEA+ALS
Sbjct: 135 LNVTTSFVAEEQAIAAKDDNDSI--------ETSKKVLPSVSTSLVLAAGVGIAEAIALS 186

Query: 220 FGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIG 279
            GS FLM++M IP DSPMR+PAE FL LRA+GAPPIV+ALAAQGAFRGF DT TPLYA+ 
Sbjct: 187 LGSDFLMDVMAIPFDSPMRIPAEQFLRLRAYGAPPIVVALAAQGAFRGFKDTTTPLYAVV 246

Query: 280 AGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVV 339
           AGN++NA+LDPILIF   FGI GAA ATVISEYLIAFIL+WKL++NV+L+SP I   R  
Sbjct: 247 AGNVLNAVLDPILIFVLGFGISGAAAATVISEYLIAFILLWKLNENVVLLSPQIKVGRAN 306

Query: 340 HYLKSGGLLIGRTIAVLLTMTLATSMAAREGP 371
            YLKSGGLLIGRT+A+L+  TLATS+AA+ GP
Sbjct: 307 QYLKSGGLLIGRTVALLVPFTLATSLAAQNGP 338

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823717|ref|XP_002879741.1| mate efflux family protein [Arabidopsis lyrata subsp. lyrata] gi|297325580|gb|EFH56000.1| mate efflux family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  360 bits (923), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 211/356 (59%), Positives = 250/356 (70%), Gaps = 56/356 (15%)

Query: 44  RRNLTCSARLKSAPHKKKTASTS-----------LQTSPPDPSRFSLSGSFSLINIIARL 92
           RR + C    KS+P  +  A T+           +++  PDP      G           
Sbjct: 33  RRTIFC----KSSPRDESPAVTASSRRPEKQQNLVESPKPDPDHKPEPG----------- 77

Query: 93  SDGFKFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVS 152
                  ++G+EI SIALPAALALAADPI SL+DTAFVGH+GS ELAAVGVSVSVFNLVS
Sbjct: 78  -----IGKIGMEIMSIALPAALALAADPITSLVDTAFVGHIGSAELAAVGVSVSVFNLVS 132

Query: 153 KLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGI 212
           KLFNVPLLN+TTSFVAEEQA+ ++  DD  S       +  KK+LPS+STSL LAAG+GI
Sbjct: 133 KLFNVPLLNVTTSFVAEEQAIAAK--DDSDSI------ETSKKVLPSVSTSLVLAAGVGI 184

Query: 213 AEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTK 272
           AEA+ALS GS FLM++M IP DSPMR+PAE FL LRA+GAPPIV+ALAAQGAFRGF DT 
Sbjct: 185 AEAIALSLGSDFLMDVMAIPFDSPMRIPAEQFLRLRAYGAPPIVVALAAQGAFRGFKDTT 244

Query: 273 TPLYAIG-----------------AGNLINAILDPILIFFFHFGIGGAAIATVISEYLIA 315
           TPLYA+G                 AGN++NAILDPILIF   FGI GAA ATVISEYLIA
Sbjct: 245 TPLYAVGKSMTDIYMIVNCCYFNLAGNVLNAILDPILIFVLGFGISGAAAATVISEYLIA 304

Query: 316 FILIWKLSDNVLLMSPDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGP 371
           FIL+WKL++NV+L+SP I   R   YLKSGGLLIGRT+A+L+  TLATS+AA+ GP
Sbjct: 305 FILLWKLNENVVLLSPQIKVGRANQYLKSGGLLIGRTVALLVPFTLATSLAAQNGP 360

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506191|ref|XP_003623384.1| MATE efflux family protein expressed [Medicago truncatula] gi|355498399|gb|AES79602.1| MATE efflux family protein expressed [Medicago truncatula]

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 200/278 (71%), Positives = 229/278 (82%), Gaps = 2/278 (0%)

Query: 96  FKFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLF 155
           FKFDELG+++ SIALPAA+ALAADPIASLIDTAFVGH+G+VELAAVGVS SVFNLVSK+F
Sbjct: 110 FKFDELGMDMLSIALPAAVALAADPIASLIDTAFVGHIGAVELAAVGVSASVFNLVSKVF 169

Query: 156 NVPLLNITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEA 215
           NVPLLNITTSFVAEEQA+  +  +   ++ +   E+  KKLL S+STSL LAAG+GIAE 
Sbjct: 170 NVPLLNITTSFVAEEQALIGKEEESEQAEENGKSER--KKLLSSVSTSLVLAAGLGIAET 227

Query: 216 LALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPL 275
           +ALS GSG LM I+GI ADSP+R PAE+FL LRAFGA PIVIALAAQG FRGF DTKTPL
Sbjct: 228 VALSLGSGPLMTILGIAADSPIREPAEHFLTLRAFGALPIVIALAAQGTFRGFKDTKTPL 287

Query: 276 YAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDG 335
           YA+GAGN +  ILDPILIF    GI GAAIATVISEYLIAFIL+W LS  VLL+  D DG
Sbjct: 288 YAVGAGNFLVVILDPILIFLCGLGISGAAIATVISEYLIAFILLWNLSGKVLLIPFDFDG 347

Query: 336 RRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIP 373
            +   YLKSGGLLI RT+AV +TMTL TS+AA +GPIP
Sbjct: 348 AKFFSYLKSGGLLIARTLAVFITMTLTTSLAANQGPIP 385

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357153194|ref|XP_003576370.1| PREDICTED: MATE efflux family protein 2, chloroplastic-like [Brachypodium distachyon]

 Score =  357 bits (917), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 187/287 (65%), Positives = 234/287 (81%), Gaps = 7/287 (2%)

Query: 92  LSDGFKFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLV 151
           L D F+ D +G++I  IA PA +ALAADP+ +L+DTAFVGH+GSVELAAVGVS+SVFNLV
Sbjct: 225 LLDWFRLDSVGMDILGIAAPAVVALAADPVTALVDTAFVGHIGSVELAAVGVSISVFNLV 284

Query: 152 SKLFNVPLLNITTSFVAEEQAVKSQGS-----DDGSSQIDHGVEQQGKKLLPSISTSLAL 206
           SKLFNVPLLN+TTSFVAE+QAV +  S     D+ SS  +   E+  +K LP++STSLAL
Sbjct: 285 SKLFNVPLLNVTTSFVAEQQAVDASPSGVGERDELSSTQEQAAEK--RKFLPAVSTSLAL 342

Query: 207 AAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFR 266
           AAGIG+ E +AL  GSG LM+I+GIP DSPMR PAE FL LRA+GAPP++++LAAQGAFR
Sbjct: 343 AAGIGLMEMVALIAGSGMLMDIVGIPVDSPMRAPAEQFLTLRAYGAPPVIVSLAAQGAFR 402

Query: 267 GFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNV 326
           GFMDTKTPLYA+GAGNL+NAILD I IF    G+ GAA+ATV SEYL AFIL+WKL++ +
Sbjct: 403 GFMDTKTPLYAVGAGNLVNAILDAIFIFPLGLGVSGAALATVTSEYLAAFILLWKLNNEL 462

Query: 327 LLMSPDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIP 373
           +L S D+ G  ++ YLKSG LLIGRTIAV+L ++L+TS+AAR+GP+P
Sbjct: 463 VLFSWDVIGGDIIRYLKSGALLIGRTIAVILPLSLSTSLAARQGPVP 509

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
TAIR|locus:2057135	521	AT2G38330 "AT2G38330" [Arabido	0.818	0.596	0.519	2.5e-74
TAIR|locus:2121783	560	AT4G38380 [Arabidopsis thalian	0.639	0.433	0.433	1.4e-48
TAIR|locus:2008236	515	AT1G51340 [Arabidopsis thalian	0.384	0.283	0.431	1.2e-43
TAIR|locus:2077477	526	FRD3 "FERRIC REDUCTASE DEFECTI	0.405	0.292	0.428	9.6e-41

TAIR|locus:2057135 AT2G38330 "AT2G38330" [Arabidopsis thaliana (taxid:3702)]

 Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
 Identities = 171/329 (51%), Positives = 209/329 (63%)

Query:    44 RRNLTCSARLKSAPHKKKTA-STSLQTSPPDPSRFSLSGSFSLINIIARLSDGFKFDELG 102
             RR + C    KS+P  +  A STS Q   P+  +  L+ S +  +   +   G    ++G
Sbjct:    27 RRTIVC----KSSPRDESPAVSTSSQR--PEKQQNPLT-SQNKPDHDHKPDPGI--GKIG 77

Query:   103 LEIWXXXXXXXXXXXXXXXXXXXXTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNI 162
             +EI                     TAFVGH+GS ELAAVGVSVSVFNLVSKLFNVPLLN+
Sbjct:    78 MEIMSIALPAALALAADPITSLVDTAFVGHIGSAELAAVGVSVSVFNLVSKLFNVPLLNV 137

Query:   163 TTSFVAEEQAVKXXXXXXXXXXIDHGVEQQGKKLLPSISTSXXXXXXXXXXXXXXXSFGS 222
             TTSFVAEEQA+            D+   +  KK+LPS+STS               S GS
Sbjct:   138 TTSFVAEEQAIAAKD--------DNDSIETSKKVLPSVSTSLVLAAGVGIAEAIALSLGS 189

Query:   223 GFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGN 282
              FLM++M IP DSPMR+PAE FL LRA+GAPPIV+ALAAQGAFRGF DT TPLYA+ AGN
Sbjct:   190 DFLMDVMAIPFDSPMRIPAEQFLRLRAYGAPPIVVALAAQGAFRGFKDTTTPLYAVVAGN 249

Query:   283 LINAILDPILXXXXXXXXXXXXXXTVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHYL 342
             ++NA+LDPIL              TVISEYLIAFIL+WKL++NV+L+SP I   R   YL
Sbjct:   250 VLNAVLDPILIFVLGFGISGAAAATVISEYLIAFILLWKLNENVVLLSPQIKVGRANQYL 309

Query:   343 KSGGLLIGRTIAVLLTMTLATSMAAREGP 371
             KSGGLLIGRT+A+L+  TLATS+AA+ GP
Sbjct:   310 KSGGLLIGRTVALLVPFTLATSLAAQNGP 338

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2121783 AT4G38380 [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 107/247 (43%), Positives = 149/247 (60%)

Query:   127 TAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKXXXXXXXXXXID 186
             TA++G LGSVEL + GVS+++FN +SKLFN+PLL++ TSFVAE+ A K            
Sbjct:   131 TAYIGRLGSVELGSAGVSMAIFNTISKLFNIPLLSVATSFVAEDIA-KIAAQDLASEDSQ 189

Query:   187 HGVEQQG---KKLLPSISTSXXXXXXXXXXXXXXXSFGSGFLMNIMGIPADSPMRVPAEN 243
               +  QG   +K L S+ST+               S  SG  + +MGI + S M +PA  
Sbjct:   190 SDIPSQGLPERKQLSSVSTALVLAIGIGIFEALALSLASGPFLRLMGIQSMSEMFIPARQ 249

Query:   244 FLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILXXXXXXXXXXX 303
             FL LRA GAP  V++LA QG FRGF DTKTP+Y +G GN +   L P+            
Sbjct:   250 FLVLRALGAPAYVVSLALQGIFRGFKDTKTPVYCLGIGNFLAVFLFPLFIYKFRMGVAGA 309

Query:   304 XXXTVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLAT 363
                +VIS+Y +A +++  L+  V+L+ P I   +   YLKSGG ++GRT++VL+TMT+AT
Sbjct:   310 AISSVISQYTVAILMLILLNKRVILLPPKIGSLKFGDYLKSGGFVLGRTLSVLVTMTVAT 369

Query:   364 SMAAREG 370
             SMAAR+G
Sbjct:   370 SMAARQG 376

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2008236 AT1G51340 [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
 Identities = 63/146 (43%), Positives = 91/146 (62%)

Query:   225 LMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLI 284
             L++ MG+  DSPM  P++ +L+LR+ GAP ++++LAAQG FRGF DT TPL+A   G++ 
Sbjct:   192 LLSFMGVKHDSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVT 251

Query:   285 NAILDPILXXXXXXXXXXXXXXTVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHYLKS 344
             N ILDPI                VIS+YL+  IL+WKL   V + +      +   ++K+
Sbjct:   252 NIILDPIFIFVFRLGVTGAATAHVISQYLMCGILLWKLMGQVDIFNMSTKHLQFCRFMKN 311

Query:   345 GGLLIGRTIAVLLTMTLATSMAAREG 370
             G LL+ R IAV   +TL+ S+AAREG
Sbjct:   312 GFLLLMRVIAVTFCVTLSASLAAREG 337

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2077477 FRD3 "FERRIC REDUCTASE DEFECTIVE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 9.6e-41, Sum P(2) = 9.6e-41
 Identities = 66/154 (42%), Positives = 91/154 (59%)

Query:   220 FGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIG 279
             F S  L+ +MG+  +SPM  PA  +L++RA GAP ++++LA QG FRGF DTKTPL+A  
Sbjct:   191 FSSKLLLGVMGVKPNSPMLSPAHKYLSIRALGAPALLLSLAMQGIFRGFKDTKTPLFATV 250

Query:   280 AGNLINAILDPILXXXXXXXXXXXXXXTVISEYLIAFILIWKLSDNVLLMSPDIDGRRVV 339
               ++IN +LDPI                VIS+Y +  IL   L+  V L+ P+    +  
Sbjct:   251 VADVINIVLDPIFIFVLRLGIIGAAIAHVISQYFMTLILFVFLAKKVNLIPPNFGDLQFG 310

Query:   340 HYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIP 373
              +LK+G LL+ RTIAV    TLA +MAAR G  P
Sbjct:   311 RFLKNGLLLLARTIAVTFCQTLAAAMAARLGTTP 344

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005215 "transporter activity" evidence=ISS

GO:0006879 "cellular iron ion homeostasis" evidence=IMP

GO:0015137 "citrate transmembrane transporter activity" evidence=IDA

GO:0071281 "cellular response to iron ion" evidence=IEP

GO:0071369 "cellular response to ethylene stimulus" evidence=IEP

GO:0071732 "cellular response to nitric oxide" evidence=IEP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	380
cd13136	424	cd13136, MATE_DinF_like, DinF and similar proteins	1e-61
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	8e-35
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	2e-30
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	4e-29
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	3e-26
cd13133	438	cd13133, MATE_like_7, Uncharacterized subfamily of	1e-21
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	1e-17
cd13140	435	cd13140, MATE_like_1, Uncharacterized subfamily of	2e-17
cd13142	444	cd13142, MATE_like_12, Uncharacterized subfamily o	1e-16
cd13143	426	cd13143, MATE_MepA_like, Subfamily of the multidru	2e-16
cd13144	434	cd13144, MATE_like_4, Uncharacterized subfamily of	3e-16
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	1e-15
cd13147	441	cd13147, MATE_MJ0709_like, Uncharacterized subfami	6e-15
cd13149	434	cd13149, MATE_like_2, Uncharacterized subfamily of	9e-15
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	3e-14
pfam01554	161	pfam01554, MatE, MatE	1e-12
PRK10367	441	PRK10367, PRK10367, DNA-damage-inducible SOS respo	2e-11
cd13139	448	cd13139, MATE_like_14, Uncharacterized subfamily o	7e-11
cd13135	429	cd13135, MATE_like_9, Uncharacterized subfamily of	2e-10
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	6e-10
cd13145	440	cd13145, MATE_like_5, Uncharacterized subfamily of	7e-10
PRK10189	478	PRK10189, PRK10189, MATE family multidrug exporter	1e-09
cd13141	443	cd13141, MATE_like_13, Uncharacterized subfamily o	1e-09
cd13148	441	cd13148, MATE_like_3, Uncharacterized subfamily of	4e-09
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	6e-09
PRK01766	456	PRK01766, PRK01766, multidrug efflux protein; Revi	2e-08
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	2e-07
TIGR01695	502	TIGR01695, mviN, integral membrane protein MviN	2e-06
COG0728	518	COG0728, MviN, Uncharacterized membrane protein, p	6e-06
cd13146	433	cd13146, MATE_like_6, Uncharacterized subfamily of	8e-06
cd13123	420	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of	4e-05
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	8e-05
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	9e-05
cd13128	402	cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu	2e-04
cd13142	444	cd13142, MATE_like_12, Uncharacterized subfamily o	3e-04
cd13124	434	cd13124, MATE_SpoVB_like, Stage V sporulation prot	4e-04
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	0.001
PRK09575	453	PRK09575, vmrA, multidrug efflux pump VmrA; Review	0.002
pfam03023	452	pfam03023, MVIN, MviN-like protein	0.002

>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score =  203 bits (519), Expect = 1e-61
 Identities = 89/276 (32%), Positives = 138/276 (50%), Gaps = 26/276 (9%)

Query: 104 EIWSIALPAALALAADPIASLIDTAFVGHLGS-VELAAVGVSVSVFNLVSKLFNVPLLNI 162
           EI ++ALPA L+    P+  L+DTA VGHLGS   L AV +  ++FN +  LF    +  
Sbjct: 4   EILALALPAILSNITVPLLGLVDTAVVGHLGSAAYLGAVALGTTIFNTLFWLFGFLRMG- 62

Query: 163 TTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGS 222
           TT  VA  QA+ +   ++                +  +  +L LA  IG+   L  S   
Sbjct: 63  TTGLVA--QALGAGDREE---------------AIALLVRALLLALAIGLLLILLQSPLL 105

Query: 223 GFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGN 282
              + ++G  A + +   A  +L +R  GAP +++   A G FRG  DT+TPL     GN
Sbjct: 106 ALALLLLG--ASAAVAALARQYLRIRILGAPAVLLNYVATGWFRGLQDTRTPLILQIVGN 163

Query: 283 LINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVH-- 340
           ++N +LDP+ +F   +G+ GAA+ATVI++YL A + +W L   V L+   +  R      
Sbjct: 164 VVNIVLDPLFVFGLGWGVAGAALATVIAQYLGALLGLWLLRRRVRLLGKSLSRRLPSKAA 223

Query: 341 ---YLKSGGLLIGRTIAVLLTMTLATSMAAREGPIP 373
                K    +  RT+A+L      T++AAR G + 
Sbjct: 224 LKRLFKLNRDIFIRTLALLAAFLFFTALAARLGDVI 259

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score =  130 bits (330), Expect = 8e-35
 Identities = 89/272 (32%), Positives = 129/272 (47%), Gaps = 31/272 (11%)

Query: 111 PAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEE 170
           PA LA    P+  L+DTAFVGHLG V+LAAV +  S   +      + L   TT+ VA+ 
Sbjct: 1   PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLG-SSVFMFLFSILMGLGTATTALVAQA 59

Query: 171 QAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMG 230
               +                  ++L      SL LA  +G+   L   F    L+++MG
Sbjct: 60  VGAGNY-----------------QRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMG 102

Query: 231 IPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDP 290
             AD  +   A+++L +   G P  ++    +G  RG  DTKTP+Y    GN+IN IL+ 
Sbjct: 103 --ADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNY 160

Query: 291 ILIF--FFHFGIGGAAIATVISEYLIAFILIWKLSD-------NVLLMSPDIDGRRVVHY 341
           ILIF  F   GI GAA+ATVIS +L+  +L++ +            L+ PD +   +   
Sbjct: 161 ILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEV--LKRL 218

Query: 342 LKSGGLLIGRTIAVLLTMTLATSMAAREGPIP 373
           LK G  +  R I   L+  L   + AR G I 
Sbjct: 219 LKLGLPIAFRVILESLSFALLALLVARLGSIA 250

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score =  120 bits (303), Expect = 2e-30
 Identities = 69/223 (30%), Positives = 108/223 (48%), Gaps = 24/223 (10%)

Query: 104 EIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNIT 163
            IWS+A P  L      +  L+D   VG LG+  +AAVG++  V  L+  L    L   T
Sbjct: 2   RIWSLAWPVILENLLQTLVGLVDVFMVGRLGAEAIAAVGLATQVLWLLLVLNMA-LGTGT 60

Query: 164 TSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSG 223
            + V+  Q+    G+ D             ++   ++  SL LA  + +  AL     + 
Sbjct: 61  VALVS--QSY---GAGDY------------ERARRALGQSLLLALLLSLPLALLGLLFAE 103

Query: 224 FLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNL 283
            L+ ++G  AD  +   A  +L +   G P   ++L    A RG  DTKTP+Y +   N+
Sbjct: 104 PLLRLLG--ADPEVIALALTYLRIVLLGIPFFFLSLVGNAALRGAGDTKTPMYIMIIVNV 161

Query: 284 INAILDPILIF----FFHFGIGGAAIATVISEYLIAFILIWKL 322
           +N +LD +LIF    F   G+ GAA+ATVIS  + A +L++ L
Sbjct: 162 LNIVLDYVLIFGLWGFPGLGVAGAALATVISRVVGALLLLFLL 204

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score =  116 bits (294), Expect = 4e-29
 Identities = 85/283 (30%), Positives = 137/283 (48%), Gaps = 28/283 (9%)

Query: 97  KFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFN 156
            F ++   +  +A+P  L      +  L+DT  VGHLG+  LAAVG++  +F L+  +F 
Sbjct: 11  PFKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFI 70

Query: 157 VPLLNITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEAL 216
             L   TT  VA     ++ G+ D             KK    +   L LA  +G+  A+
Sbjct: 71  G-LGTGTTVLVA-----QAIGAGDR------------KKAKRVLGQGLLLALLLGLLLAI 112

Query: 217 ALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLY 276
            L F +  L+ ++G PA+  +   A  +L +   GAP  +++    G  RG  DTKTP+Y
Sbjct: 113 LLLFFAEPLLRLLGAPAE--VLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170

Query: 277 AIGAGNLINAILDPILIF--FFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPD-- 332
            +  GNL+N +L+ +LIF  F   G+ GAA+ATVI+ ++ A +L+  L     L+S    
Sbjct: 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKK 230

Query: 333 ----IDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGP 371
                D + +   L+ G  +   +++  L   L T   AR G 
Sbjct: 231 KLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGT 273

Length = 455

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score =  108 bits (273), Expect = 3e-26
 Identities = 55/203 (27%), Positives = 86/203 (42%), Gaps = 25/203 (12%)

Query: 123 SLIDTAFVGHLGSVE-LAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQ--GSD 179
           +L+D   VG    V  LAAV     +  L        L  I          + SQ  G+ 
Sbjct: 23  NLVDLLIVGQFLGVAALAAVSNGSPIIFL--------LTAIGMGLSMGGTILISQYIGAK 74

Query: 180 DGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRV 239
           D             +K   ++ T L L   +GI   +     +  ++ +M  PA+     
Sbjct: 75  DE------------EKAKKAVGTLLVLFLILGIVLTILGLLFAPPILRLMNTPAEI--LE 120

Query: 240 PAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFG 299
            A ++L +   G P I    A     RG  D+KTPLY +    ++N ILD + I  FH G
Sbjct: 121 LAVSYLRICFLGIPFIFGYNAYSAILRGLGDSKTPLYFVIIACVLNIILDLLFIAVFHMG 180

Query: 300 IGGAAIATVISEYLIAFILIWKL 322
           + GAA+ATVI++ +   + ++ L
Sbjct: 181 VAGAALATVIAQAISVLLALYYL 203

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 95.3 bits (238), Expect = 1e-21
 Identities = 59/222 (26%), Positives = 91/222 (40%), Gaps = 26/222 (11%)

Query: 104 EIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNIT 163
           EI  IALP  L++ +  +    D AF+G L  V LAA G +  V      +    L +  
Sbjct: 6   EILKIALPLVLSMLSQTVMGFTDRAFLGRLSEVALAASGPA-GVLYFAILMLFFGLSSGV 64

Query: 164 TSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSG 223
             FVA  Q               +G   +  ++   +   L  +  +    AL  +  + 
Sbjct: 65  QVFVA--QY--------------NG-AGRYSRIGRVLWQGLYFSLLLAPLLALLSALAAP 107

Query: 224 FLMNIMGIPADSPMRVPAE-NFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGN 282
            L  ++G    SP     E  +  +R  GAP  ++  A +  F G   T+  + A     
Sbjct: 108 LLFLLLG---HSPEVQALEVEYFRIRILGAPFSLLGAALRAFFSGIGRTRVVMVANLVMV 164

Query: 283 LINAILDPILIF----FFHFGIGGAAIATVISEYLIAFILIW 320
           ++N +LD  LIF    F   GI GAAIATVI+E +     + 
Sbjct: 165 VVNIVLDYALIFGKLGFPAMGIAGAAIATVIAEAVSLLFFLL 206

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 83.7 bits (208), Expect = 1e-17
 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 33/225 (14%)

Query: 104 EIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNIT 163
            +  +ALP  +A  A      +DT   G LG+ +LAAV +  S++  V   F + LL   
Sbjct: 4   ALLRLALPILIAQLAQMAMGFVDTVMAGRLGADDLAAVALGSSLWFPVF-TFGMGLLLAV 62

Query: 164 TSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSG 223
           T  VA+                 HG   + +++  ++   L LA  + +   L L   + 
Sbjct: 63  TPLVAQA----------------HGAGDR-RRIRRAVRQGLWLALLLSLPLMLLLWL-AP 104

Query: 224 FLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMD----TKTPLYAIG 279
            ++ +MG   +  +   A  +L   A+G PP ++        R F+D    T+  +    
Sbjct: 105 PILPLMGQEPE--VAAIARGYLLALAWGIPPALLFQ----VLRSFLDALGRTRPAMVITL 158

Query: 280 AGNLINAILDPILIF----FFHFGIGGAAIATVISEYLIAFILIW 320
              ++N  L+ +LIF        G  GA +AT I  +L+   L +
Sbjct: 159 LALVLNIPLNYVLIFGKFGLPALGGAGAGLATAIVYWLMFLALAF 203

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 83.0 bits (206), Expect = 2e-17
 Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 25/205 (12%)

Query: 123 SLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGS 182
           +L D  +VG LGS  +AAVG +   F           + +  +       +   G+    
Sbjct: 25  NLTDMFWVGRLGSDAVAAVGTA-GFF-----------VWLAYALAL----LSKIGAQVKV 68

Query: 183 SQ-IDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPA 241
           SQ I    E++ +K       +L L   +GI   L L   +  L+    +  D+ +   A
Sbjct: 69  SQSIGAKDEKEARKY---ARNALQLNLLLGILYGLLLLLFAKPLIGFFNL-GDAEVISLA 124

Query: 242 ENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIF----FFH 297
             +L + A G     +     G F    D+KTP      G ++N ILDP+LIF    F  
Sbjct: 125 ITYLRIVALGLIFSFLNPVFTGIFNALGDSKTPFIINAIGLVLNIILDPLLIFGFGPFPA 184

Query: 298 FGIGGAAIATVISEYLIAFILIWKL 322
            G+ GAA+ATV+++ ++  + ++ L
Sbjct: 185 LGVAGAALATVLAQAIVFLLFLYAL 209

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 435

>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 80.3 bits (199), Expect = 1e-16
 Identities = 61/220 (27%), Positives = 97/220 (44%), Gaps = 25/220 (11%)

Query: 108 IALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFV 167
           +A P  ++       +L DT ++G LG+  +AA  +S  +  L         +++     
Sbjct: 16  LAWPIIVSNLLQVAYNLADTFWLGRLGADAVAAPSISWPLIFL--------FISLGGGLT 67

Query: 168 AEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMN 227
               A+ +Q    G+   D   +  G+     I  SL LA  +G             L+ 
Sbjct: 68  VAGTALVAQ--YTGAGDYDKANKVAGQTFSFVIILSLILAV-LGYI------LSRPLLLL 118

Query: 228 IMGIPAD-SPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINA 286
           ++G P +  P+   A  +L +   G P + I        RG  DTKTP+  +    L+N 
Sbjct: 119 LIGAPEEVYPL---ALAYLRIIFLGLPFMFIFFVFNSLLRGIGDTKTPMKIMFGSVLLNV 175

Query: 287 ILDPILIF----FFHFGIGGAAIATVISEYLIAFILIWKL 322
           ILDP+LIF    F   G+ GAA+ATVIS  + A I ++ L
Sbjct: 176 ILDPLLIFGIGPFPGLGVAGAALATVISRGIAAVIGLYLL 215

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 444

>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA

 Score = 79.9 bits (198), Expect = 2e-16
 Identities = 52/217 (23%), Positives = 96/217 (44%), Gaps = 21/217 (9%)

Query: 105 IWSIALPAALALAADPIASLIDTAFVGHL-GSVELAAVGVSVSVFNLVSKLFNVPLLNIT 163
               ALPA + +  + + +++D  FVGH  G++ LAAV +   +  L+  L  +    I 
Sbjct: 6   FLKFALPAIIGMLVNGLYNIVDGIFVGHGVGALALAAVNLVFPIIMLLMALGLM----IG 61

Query: 164 TSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSG 223
               +        G  + +++I               ST+L L+  +G+   +       
Sbjct: 62  VGGASLISRRLGAGDREKANRI--------------FSTALLLSLILGLLLTILGLLFLD 107

Query: 224 FLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNL 283
            L+ ++G  A   +   A ++L +   GAP  +++       R     K  +  +  G +
Sbjct: 108 PLLRLLG--ASGELLPYAVDYLRIILLGAPFTILSSVLNNLLRAEGKPKLAMLGMLIGAV 165

Query: 284 INAILDPILIFFFHFGIGGAAIATVISEYLIAFILIW 320
           +N ILDP+ IF    GI GAA+ATVI++ +   +L+ 
Sbjct: 166 LNIILDPLFIFVLGLGIAGAALATVIAQLISLLLLLL 202

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump. Length = 426

>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 79.6 bits (197), Expect = 3e-16
 Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 24/237 (10%)

Query: 105 IWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITT 164
           + ++++PA +++    + +++D+ FV  LG   L AV ++  + NL+  +  V       
Sbjct: 10  LLTMSIPAMISMLFQALYNIVDSIFVARLGENALTAVSLAFPIQNLMIAV-AVGTGVGVN 68

Query: 165 SFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGF 224
           + ++     +S G  D             K+   + +  L LA    +   L   FG   
Sbjct: 69  ALLS-----RSLGEKDQ------------KEANKAANNGLLLALLSYLLFLLLGLFGVKP 111

Query: 225 LMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLI 284
              +     D  +      +L+     +  +   +  +   +   +T TP+ A   G +I
Sbjct: 112 FFRLFT--DDPEILEYGYAYLSWCVIFSFGMFFQILCEKVLQSTGNTITPMIAQLIGAII 169

Query: 285 NAILDPILIFFFH----FGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRR 337
           N ILDPILIF        GI GAAIATVI + L  F+  + L      + PD+   R
Sbjct: 170 NIILDPILIFGLFGFPAMGIAGAAIATVIGQILAMFLAFFFLLRKNKDVQPDLRLFR 226

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 434

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 77.5 bits (192), Expect = 1e-15
 Identities = 64/280 (22%), Positives = 118/280 (42%), Gaps = 35/280 (12%)

Query: 103 LEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNI 162
           L ++++A P  + L    +   IDT  +       +AAVGV+  +  L+  +F+   ++ 
Sbjct: 3   LSLFALAWPIFIELLLQMLLGTIDTFMLSRYSDNAVAAVGVANQILFLLILIFSF--IST 60

Query: 163 TTSFVAEEQAVKSQ--GSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSF 220
            TS +       +Q  G+            +  KK       +L     +G+  +L L F
Sbjct: 61  GTSILI------AQYLGA------------KDKKKARQIAGVALLFNLLLGLVFSLLLLF 102

Query: 221 GSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGA 280
               L+ +MG+P +  +      +L +         ++L      R    TK P+Y    
Sbjct: 103 FGAELLRLMGLPPE--LLALGSTYLRIVGGSLFLQALSLTLSAILRSHGRTKIPMYVSLI 160

Query: 281 GNLINAILDPILIF-FFHF---GIGGAAIATVIS---EYLIAFILIWKLSDNVLLMSPD- 332
            N++N + + +LIF +F     G+ G AI+TVIS     ++ FIL+++    +     D 
Sbjct: 161 MNILNIVGNYLLIFGWFGLPKLGVAGVAISTVISRAVGLVLLFILLFR-KLKIRFRLKDL 219

Query: 333 --IDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREG 370
                + +   LK G    G  ++  L+ T+ T+  AR G
Sbjct: 220 RPFPKKLLKKILKIGLPSAGEELSYNLSQTVITAFIARLG 259

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709

 Score = 75.3 bits (186), Expect = 6e-15
 Identities = 56/216 (25%), Positives = 98/216 (45%), Gaps = 23/216 (10%)

Query: 105 IWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITT 164
           I  +++P  +A+    + +L+D  +V  LG+  LAA+G    +F +        ++ +  
Sbjct: 11  IIKLSIPMIIAMLLQTLYNLVDAIWVAGLGADALAAIGFVFPLFMI--------IIGLGN 62

Query: 165 SFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSI-STSLALAAGIGIAEALALSFGSG 223
                       G    SS I   +  + K+   +    S+ L   I I   + L     
Sbjct: 63  GL--------GAG---ASSAISRRIGAKDKEGADNAAVHSILLGLIISIILTIVLLPFLE 111

Query: 224 FLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNL 283
            ++ +MG      +   A ++  +   G+  ++    A G  RG  DTK  +YA+ AG++
Sbjct: 112 PILVLMG---AGEVLDLAVDYGRIIFLGSIFLIFNNVAYGILRGEGDTKRAMYAMVAGSI 168

Query: 284 INAILDPILIFFFHFGIGGAAIATVISEYLIAFILI 319
           +N ILDPI I+    GI GAA ATVIS  + + +L+
Sbjct: 169 LNIILDPIFIYTLGLGIAGAAWATVISMLISSLVLL 204

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 441

>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 75.0 bits (185), Expect = 9e-15
 Identities = 61/209 (29%), Positives = 90/209 (43%), Gaps = 28/209 (13%)

Query: 108 IALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFV 167
           + LP    + A  I +L DT FVG LG+ ELAA+             F  P++    S  
Sbjct: 14  LTLPMIFGILAMLIFNLTDTFFVGKLGTKELAAIS------------FTFPVVLFLNSL- 60

Query: 168 AEEQAVKSQGSDDG-SSQIDHGVEQQGKKLLPSIST-SLALAAGIGIAEALALSFGSGFL 225
                  + G   G S+ I   +    +     ++T SL L+  + +  +L   F    L
Sbjct: 61  -------TIGLGIGASAVISRAIGAGDRNKAKRLATDSLILSLLLSVIVSLLGLFTIPPL 113

Query: 226 MNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLIN 285
            +++G  A   +      ++ +   G   +V+ +      R   DTK P   +    L+N
Sbjct: 114 FSLLG--ASGEILPLIVEYMAIWYLGLVFLVLPMVGNAIIRATGDTKRPSLVMLGAALVN 171

Query: 286 AILDPILIFFF----HFGIGGAAIATVIS 310
            ILDPILIF F      GI GAAIATVIS
Sbjct: 172 VILDPILIFGFGPIPGMGIAGAAIATVIS 200

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 434

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 62/215 (28%), Positives = 105/215 (48%), Gaps = 23/215 (10%)

Query: 109 ALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVA 168
           A P  L++    + +L+DT F+G L    LAAVG++  +  L+  L    L   T++ ++
Sbjct: 1   AAPLLLSMLLQTLYNLVDTFFLGRLLGDALAAVGLAFPLIALLIALGVG-LSVGTSALIS 59

Query: 169 EEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNI 228
           +               I  G E++ +++L     S+ LA  +G+  A  L F S  ++++
Sbjct: 60  QA--------------IGAGDEEKARRVL---VQSIVLAILLGLLLAALLLFFSPLILSL 102

Query: 229 MGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAIL 288
           +G  A+  +   A  +L +   G P   +     G  +G  DT+T +      NL+N +L
Sbjct: 103 LG--AEEEVIELAATYLTILILGLPITFLGAVLSGILQGEGDTRTAMIISVLSNLLNILL 160

Query: 289 DPILIFFF---HFGIGGAAIATVISEYLIAFILIW 320
           DP+LIF       GI GAA+ATVIS  + A +L+ 
Sbjct: 161 DPLLIFGLGPPELGIAGAALATVISYVIGALLLLI 195

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|190033 pfam01554, MatE, MatE

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 20/181 (11%)

Query: 111 PAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEE 170
           P  L      + SLIDT FVGHLG+V LAAV ++ S+ +L+  +F + L    T+ V   
Sbjct: 1   PIILENLLQSLYSLIDTLFVGHLGAVALAAVSIANSIASLIF-MFLLGLSTALTTLVG-- 57

Query: 171 QAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMG 230
           QA+       G+           K+   ++   L L+  I +  AL +      ++++  
Sbjct: 58  QAL-------GAGNF--------KRAGVALRQGLILSLLISLPIALLIILFREPILSLFT 102

Query: 231 IPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDP 290
              D  +   A  +L + A G P + +     G  RG  DTK PLY      L+N  L+ 
Sbjct: 103 --QDEEVLELASKYLRILALGIPFLSLQFVLSGFLRGAGDTKPPLYINLISLLLNIPLNY 160

Query: 291 I 291
           +
Sbjct: 161 L 161

The MatE domain. Length = 161

>gnl|CDD|182413 PRK10367, PRK10367, DNA-damage-inducible SOS response protein; Provisional

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 67/230 (29%), Positives = 99/230 (43%), Gaps = 40/230 (17%)

Query: 105 IWSIALPAALALAADPIASLIDTAFVGHLGS-VELA--AVGVSVSVFNLVSKLFNVPLLN 161
           +W +ALP   +    P+  L+DTA +GHL S V L   AVG + + F  +  LF   L  
Sbjct: 11  LWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLF---LRM 67

Query: 162 ITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIA------EA 215
            TT   A+    K+              +   + L+  +   LAL AG  IA        
Sbjct: 68  STTGLTAQAFGAKNP-------------QALARALVQPL--LLALGAGALIALLRTPLID 112

Query: 216 LALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPL 275
           LAL    G             +   A  FL +R   AP  +  L   G   G    + P+
Sbjct: 113 LALHIVGG----------SEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPV 162

Query: 276 YAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEY---LIAFILIWKL 322
             +  GN++N +LD  L+   H  + GAA+ATVI+EY   LI  +++ K+
Sbjct: 163 ILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKV 212

Length = 441

>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 63.0 bits (154), Expect = 7e-11
 Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 26/211 (12%)

Query: 105 IWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITT 164
           I+ +A+P  L +  + + +++D  FV  LG++ +A VG++ SV  +V  +  + L    T
Sbjct: 16  IFLLAIPMVLEMVMESLFAVVDLYFVSRLGALAIATVGLTESVLTIVYSI-AIGLSMAAT 74

Query: 165 SFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGF 224
           + VA     K               E  G   + +I   +AL+  + I        G  F
Sbjct: 75  ALVARRIGEKDP-------------EGAGFAAVQAILLGVALSLILSIL-------GYFF 114

Query: 225 LMNIMGIPADSPMRVP-AENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNL 283
             +I+ +   SP  +     +  +   G   I++     G FRG  D    + ++   N 
Sbjct: 115 AEDILSLMGASPAVIAEGYGYTRIMFGGNGFIMLLFLINGIFRGAGDAAIAMRSLWLANG 174

Query: 284 INAILDPILIF----FFHFGIGGAAIATVIS 310
           +N ILDP+ IF        G+ GAAIAT I 
Sbjct: 175 LNIILDPLFIFGLGPIPAMGVTGAAIATTIG 205

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 448

>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 58/222 (26%), Positives = 95/222 (42%), Gaps = 28/222 (12%)

Query: 104 EIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFN-LVSKLFNVPL-LN 161
           +I  IA+P  L      +  L+D AF+G +     +AVG   + FN +   L ++ +   
Sbjct: 2   KINHIAIPLILQNLVSQLQMLVDRAFLGRISIRYYSAVGNVTTPFNTITGFLGSISIGFT 61

Query: 162 ITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFG 221
           I  S        +S G+ D             K++     +S+   + IG+   L   FG
Sbjct: 62  ILGS--------QSVGAKD------------IKRINDYAISSIVYNSIIGVILFLLWLFG 101

Query: 222 SGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAG 281
           +  +  + G   D  +   + N++ + +     + I        +G  +TK  +Y     
Sbjct: 102 ARIIFVLFG--VDGQILGYSINYVRIFSIYLLLLGILFTFSSILQGIGETKPIMYGGIIK 159

Query: 282 NLINAILDPILIF----FFHFGIGGAAIATVISEYLIAFILI 319
           NL+N ILD +LIF    F   GI GAAIAT I+  L   IL+
Sbjct: 160 NLLNVILDYVLIFGNFGFPRLGIIGAAIATTIANVLNLIILV 201

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 429

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score = 59.9 bits (146), Expect = 6e-10
 Identities = 47/218 (21%), Positives = 83/218 (38%), Gaps = 22/218 (10%)

Query: 103 LEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNI 162
            ++  +A P  L        S++   FVGHLG +ELAA  ++ S  N+      + L + 
Sbjct: 3   KKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLASA 62

Query: 163 TTSFVAEEQAVKSQGSDDGSSQIDH-GVEQQGKKLLPSISTSLALAAGIGIAEALALSFG 221
             +     QA        G+      GV  Q      ++   L     I +     L   
Sbjct: 63  LDTLCG--QAF-------GAKNYKLVGVYLQR-----ALVILLLCCVPISL-----LWLN 103

Query: 222 SGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAG 281
           +  ++ ++G   +      A  +L     G     +    +   +        +Y     
Sbjct: 104 TEPILLLLGQDPEIARL--AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVA 161

Query: 282 NLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILI 319
            L+N +L+ +L+F    G  GAA+AT IS +LI  +L+
Sbjct: 162 LLLNILLNYLLVFVLGLGFIGAALATSISYWLIVVLLL 199

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 59.9 bits (146), Expect = 7e-10
 Identities = 52/242 (21%), Positives = 108/242 (44%), Gaps = 29/242 (11%)

Query: 105 IWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITT 164
           I  +A+PA++    + + +++DT F G + +  LAA+ +S  +F ++     V +   TT
Sbjct: 11  IRKLAIPASVGFFFNTMFNVVDTFFAGKISTEALAALSLSFPIFFIIIA-IGVGIGTGTT 69

Query: 165 SFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGF 224
           + +       + G+ D          ++ ++     +  L+    + I   +   F +  
Sbjct: 70  ALIG-----NALGAGD---------RRKARRY---AAQGLSFGIILAILLTVIGLFAAPP 112

Query: 225 LMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLI 284
           L  ++G  A+      A  ++++   G+   ++     G      DTK+    +  G  +
Sbjct: 113 LFRLLG--AEGDYLDLALEYMDVIFAGSIFFLLNFGLNGILNAQGDTKSYRNFLIIGFFL 170

Query: 285 NAILDPILIF----FFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVH 340
           N ILDP+ IF        G+ G A+AT+IS+++  F L++K     +  S  I G R+  
Sbjct: 171 NIILDPLFIFGGGGIPAMGVSGIALATIISQFIGMFYLLYK-----VRKSGIISGCRLRD 225

Query: 341 YL 342
           ++
Sbjct: 226 FI 227

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 440

>gnl|CDD|182293 PRK10189, PRK10189, MATE family multidrug exporter; Provisional

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 61/223 (27%), Positives = 97/223 (43%), Gaps = 22/223 (9%)

Query: 104 EIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNIT 163
           EI  +A+P  +      +  ++ T  V  LG   +A VG++ S FN+V   F   +   T
Sbjct: 30  EITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADS-FNMVIMAFFAAIDLGT 88

Query: 164 TSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSG 223
           T  VA      S G  D             ++   +   SL +     +  A+ + F   
Sbjct: 89  TVVVA-----FSLGKRDR------------RRARAAARQSLVIMTLFAVLLAVLIHFFGE 131

Query: 224 FLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNL 283
            +++++   A   ++  A  +L L  +  P   I L   GA RG  +TK PL   G  N+
Sbjct: 132 QIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLINGGMNI 191

Query: 284 INAILDPILIF--FFHFGIG--GAAIATVISEYLIAFILIWKL 322
           +N I+  ILI+  F   G+G  GA +   IS Y+ A  +IW L
Sbjct: 192 LNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVL 234

Length = 478

>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 60/223 (26%), Positives = 93/223 (41%), Gaps = 31/223 (13%)

Query: 105 IWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNI-T 163
           I S+ALP A+ +    +  L+D  FVG LG   LA V ++ +V   V  L  V  LN+ T
Sbjct: 13  IISMALPIAIGMIIQTLYFLVDLYFVGQLGDAALAGVSLAGNVMFFVMALTQV--LNVGT 70

Query: 164 TSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSG 223
            + V+   AV  +   + ++  +                SL LAA +G+   +       
Sbjct: 71  AALVS--HAVGRKDQGEANAVFNQ---------------SLLLAAVLGLVVLVLGYLFGR 113

Query: 224 FLMNIMGIPADSPMRVPAENFLN--LRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAG 281
             +  +   AD+     A  +L   + +     I+  L A  A RG    K  +      
Sbjct: 114 LYLETLA--ADAATVEAATTYLYWFIPSLALQFILTVLGA--ALRGTGIVKPFMVIQILA 169

Query: 282 NLINAILDPILIF----FFHFGIGGAAIATVISEYLIAFILIW 320
            L+N IL PILI         G+ GA +A+ IS   IA +L+ 
Sbjct: 170 VLLNIILAPILITGWGTGRALGVAGAGLASSIS-VAIAVVLLL 211

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 443

>gnl|CDD|240553 cd13148, MATE_like_3, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 63/272 (23%), Positives = 107/272 (39%), Gaps = 28/272 (10%)

Query: 109 ALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVA 168
           ALP  LAL    +  L +T FVG LG+  LA V +   +  L   + N  +    +S +A
Sbjct: 18  ALPNILALLVQTLVGLAETYFVGQLGTDALAGVALVFPLLMLTQMMSNGAMGGGVSSAIA 77

Query: 169 EEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNI 228
             +A+ +   +   + + H                L +A   G+  +L        L  +
Sbjct: 78  --RALGAGDRERAEALVWHA---------------LVIALAGGLVFSLLFLLFGPALYRL 120

Query: 229 MGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAIL 288
           +G   ++     A  + N+   GA  I +      A RG  + + P      G ++   L
Sbjct: 121 LGGRGEA--LDAALAYSNVLFSGAILIWLVNLLAAALRGTGNMRVPALVTLVGAVVQIPL 178

Query: 289 DPILIFFF----HFGIGGAAIATVISEYLIAFILIWKLSD-----NVLLMSPDIDGRRVV 339
            P LI  +      G+ GAA+A V+   L A +L+  L+       + L +  ++ R   
Sbjct: 179 SPGLILGWGPLPRLGVAGAAVAAVLYYALAALVLLRYLASGRSRLRLRLRALRLERRLFR 238

Query: 340 HYLKSGGLLIGRTIAVLLTMTLATSMAAREGP 371
             L+ G L     +   LT+ L T +  R G 
Sbjct: 239 DILRVGLLAALSPLQTNLTVLLLTGLVGRFGT 270

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 441

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 57.1 bits (139), Expect = 6e-09
 Identities = 49/230 (21%), Positives = 88/230 (38%), Gaps = 26/230 (11%)

Query: 95  GFKFD-ELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSK 153
           GF+ D ++  ++  I LPA L      +  L+  A V   G+  LAA  + + + +L   
Sbjct: 217 GFRLDRKIIKKLLRIGLPAGLEQLLRSLGFLVLLAIVASYGTAALAAYQIGLRIESLA-- 274

Query: 154 LFNVPL--LNITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIG 211
              +P    ++  S +         G + G+   D    + GK        +L L     
Sbjct: 275 --FMPGFGFSMAASTLV--------GQNLGAGDPD-EARRYGK-------RALRLGVLFM 316

Query: 212 IAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDT 271
               L L   +  L ++     D  +      +L + A   P + I+    GA RG  DT
Sbjct: 317 GLLGLLLFIFAPPLASLFT--PDPEVIELGVLYLRIVALSQPFLAISFVLSGALRGAGDT 374

Query: 272 KTPLYAIGAGNLINAI-LDPILIFFFHFGIGGAAIATVISEYLIAFILIW 320
           + PL        +  + L  +L F    G+ G  +A  +   + A +L++
Sbjct: 375 RPPLIINLISMWLVRLPLAYLLGFVLGLGLTGIWLAMFVDTIVRAILLLY 424

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 32/221 (14%)

Query: 108 IALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFV 167
           +ALP  LA  A      +DT   G + + +LAAV +  S++  V  LF   LL   T  V
Sbjct: 17  LALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVI-LFGHGLLLALTPIV 75

Query: 168 AEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMN 227
           A  Q   +   +  + Q+     +QG          L LA  + +   L L      ++N
Sbjct: 76  A--QLNGAGRRERIAHQV-----RQG----------LWLALFLSVLIMLVLYNAVPPILN 118

Query: 228 IMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMD----TKTPLYAIGAGNL 283
           +M +  +  +   A  +L+   +G P  ++        R F+D    TK  +     G L
Sbjct: 119 MMNL--EPEVADIAVGYLHALLWGIPAYLLYQ----VLRSFIDGLGKTKPTMVIGFLGLL 172

Query: 284 INAILDPILIF----FFHFGIGGAAIATVISEYLIAFILIW 320
           IN  L+ I I+    F   G  G  +AT I  +++   ++ 
Sbjct: 173 INIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLI 213

Length = 456

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 50/220 (22%), Positives = 81/220 (36%), Gaps = 26/220 (11%)

Query: 104 EIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNI- 162
           EI  + LP  L   ++ +  L+ T FV  LG+V LAA G+++ + +       +P   I 
Sbjct: 242 EILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIAS----FIFMPPFGIA 297

Query: 163 --TTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSF 220
              T  V   Q +       G+        +  +        +L L+  I +  AL L  
Sbjct: 298 QAVTILVG--QNL-------GAGNYKR-ARRAAR-------LALKLSLLIALLIALLLLL 340

Query: 221 GSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGA 280
               ++++     D  +   A   L + A   P   I     G  RG  D K P      
Sbjct: 341 FREPIISLFT--TDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLL 398

Query: 281 GNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIW 320
                 +    L+ FF  G+ G  I   +S  L A +L+ 
Sbjct: 399 SYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLL 438

Length = 455

>gnl|CDD|233536 TIGR01695, mviN, integral membrane protein MviN

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 50/246 (20%), Positives = 90/246 (36%), Gaps = 28/246 (11%)

Query: 83  FSLINIIARLSDGFKFDELGL-EIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAV 141
             L      L   F F + GL     + LP  L  +A  I  LI+TA    L    ++A+
Sbjct: 202 PFLRKAGFLLKPRFNFRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSAL 261

Query: 142 GVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSIS 201
             +  ++ L   +F + L  +    ++                  H  E    +L   ++
Sbjct: 262 YYANRIYQLPLGIFGISLSTVLLPKLSR-----------------HASEGNWNELRDLLN 304

Query: 202 TSLALAAGIGIAEALALSFGSGFLMNIM---GI--PADSPMRVPAENFLNLRAFGAPPIV 256
             + L+  + I  +  L   S  +++++   G     D+ M       L     G     
Sbjct: 305 QGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATI---LAAYGLGLIFYS 361

Query: 257 IALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAF 316
           +      AF    DT+TP        ++NA+L   L+  F  G+ G A+AT  +  + + 
Sbjct: 362 LQKVLLRAFYARKDTRTPFINSVISVVLNALLS--LLLIFPLGLVGIALATSAASMVSSV 419

Query: 317 ILIWKL 322
           +L   L
Sbjct: 420 LLYLML 425

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD , the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII [Unknown function, General]. Length = 502

>gnl|CDD|223800 COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only]

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 52/259 (20%), Positives = 88/259 (33%), Gaps = 22/259 (8%)

Query: 109 ALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVA 168
            LPA L ++   I  LIDTA    L    ++ +  +  ++ L   +F V L  +     +
Sbjct: 238 MLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVL--LPS 295

Query: 169 EEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNI 228
             +   +    +    +D G+          ++  L L A  G+   LA    S      
Sbjct: 296 LSRHAANGDWPEFLKLLDWGLR---------LTLLLTLPASAGLL-VLAEPIVSLLFERG 345

Query: 229 MGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAIL 288
                D  M   A   L   + G  P  +       F    DTKTP+       ++N +L
Sbjct: 346 AFTAEDVLMTAEA---LAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISLVVNILL 402

Query: 289 DPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHYLKSGGLL 348
           +  L+     G  G A+AT ++ ++ A +L +      L         R         LL
Sbjct: 403 N--LLLIPPLGHVGLALATSLAAWVNALLLYYL-----LRKRLVYLPGRGWGLFLILKLL 455

Query: 349 IGRTIAVLLTMTLATSMAA 367
           +   I     + L      
Sbjct: 456 LASAIMAAALLALLHLAQR 474

Length = 518

>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 25/63 (39%), Positives = 39/63 (61%)

Query: 251 GAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVIS 310
           G P I++     G  +G   TK  + A+  G ++N +LDPILIF F  G+ GAA+ATV++
Sbjct: 139 GVPFIMLIGVLMGVLQGEGRTKYMMMAMLIGTVVNIVLDPILIFVFDMGVKGAALATVLA 198

Query: 311 EYL 313
           + +
Sbjct: 199 QAI 201

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 433

>gnl|CDD|240528 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score = 44.8 bits (107), Expect = 4e-05
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 249 AFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATV 308
           A G P   +      AF    DTKTP+        +N +L+ +LI     G  G A+AT 
Sbjct: 346 ALGLPAFALVKLLSRAFYALKDTKTPVKIAVIAVAVNILLNLLLIKPL--GHVGLALATS 403

Query: 309 ISEYLIAFILIWKL 322
           +S ++ A +L+  L
Sbjct: 404 LSAWVNALLLLVLL 417

Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 420

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 44.0 bits (105), Expect = 8e-05
 Identities = 56/230 (24%), Positives = 91/230 (39%), Gaps = 28/230 (12%)

Query: 96  FKFD-ELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKL 154
           F+FD E+  EI  I LP+AL  +   I+ LI  + V   G V  AA G+      + S  
Sbjct: 217 FRFDKEILKEILKIGLPSALQQSLVSISFLIINSIVNSYGVVASAAYGI---ANKINSFA 273

Query: 155 FNVP--LLNITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGI 212
           F  P  +    ++FVA  Q +       G+ +I+        +    + T + ++  IG+
Sbjct: 274 FLPPSAIGQAVSTFVA--QNI-------GAGKIE--------RAKKGLRTGIIISLIIGL 316

Query: 213 AEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTK 272
              L + F +  L+ +    +D  +      +L + +       I     G FRG   TK
Sbjct: 317 IIILLVFFFAPQLLGLFT--SDPEVIEIGAEYLRIYSIDYILFGILFVFNGLFRGLGKTK 374

Query: 273 TPLYAIGAGNLINAILDPILIF--FFHFGIGGAAIATVISEYLIAFILIW 320
            P+  I    L    +    +       G+ G  +A  IS  L A I I 
Sbjct: 375 FPMI-ISILRLWLVRIPLAYLLSRLTGLGLFGIWLAMPISNILSAIICII 423

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 42/239 (17%), Positives = 77/239 (32%), Gaps = 22/239 (9%)

Query: 83  FSLINIIARLSDGFKFD-ELGLEIWSIALPAALALAADPIASLIDTAFVGHL-GSVELAA 140
                I+       K D EL   +  I LP+A+  +   +  LI  A V    G+  LAA
Sbjct: 198 RKGKKILKFKLSLLKPDLELLRRLLRIGLPSAIQNSLLSLGLLIIVAIVAAFGGAAALAA 257

Query: 141 VGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSI 200
             V+  + +L      + L       V +                         +     
Sbjct: 258 YTVAFRIASLAFMPA-LGLAQAALPVVGQNL-----------------GAGNFDRARRIT 299

Query: 201 STSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALA 260
             +L +   IG    L +      ++++     +      A ++L + A     + I   
Sbjct: 300 WVALLIGLLIGAVLGLLILLFPEPILSLFTNDPEFLEL--AVSYLRILAIYYLFVGIGYV 357

Query: 261 AQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILI 319
            Q  F+    T   L        +  +    ++ +   G+ G  +A VIS  L A +L+
Sbjct: 358 LQAGFQAAGRTLKSLIVSLLSYWVVRLPLAYVLAYLGLGLYGIWLALVISLILAALVLL 416

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 249 AFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATV 308
           A+G   I +        +     K  L  +  G L+N IL+ +LI    +GI GAAIAT+
Sbjct: 330 AWGFLFIFLNGIFGSILQAIGKQKLTLKILLIGALLNVILNLLLIP--KYGIIGAAIATL 387

Query: 309 ISEYLIAFILIWKLS 323
           ISE++I  +L++ L 
Sbjct: 388 ISEFIIFILLLYLLK 402

Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 402

>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 64/234 (27%), Positives = 99/234 (42%), Gaps = 26/234 (11%)

Query: 91  RLSDGFKFD-ELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFN 149
            L D  K D E   +I+ I LP+++  +A  +   + TA V   G+V +AA G+   + +
Sbjct: 225 SLRD-LKPDWEWLKKIFRIGLPSSIEQSARALGFTVMTALVAGFGTVVVAAYGIGNRIIS 283

Query: 150 LVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAG 209
           LV  L    L   T++ V   Q +       G+ QID   E+  KK       +L +   
Sbjct: 284 LVF-LPAFGLARATSTMVG--QNL-------GAGQIDRA-EEIVKK------AALLIFLI 326

Query: 210 IGIAEALALSFGSGFLMNIMGIPADSPMRVP-AENFLNLRAFGAPPIVIALAAQGAFRGF 268
           + I   LA  F       I+ +  + P  +    +FL + A   P   +     GAFRG 
Sbjct: 327 LVIGGVLAFLFAE----PIVRVFINDPEVIKEGADFLRIVAPSFPFFGLFQVINGAFRGS 382

Query: 269 MDTKTPLY-AIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFI-LIW 320
             T T +  +I    +I   L  +L +    G+ G  IA  IS  + A I L W
Sbjct: 383 GHTLTAMIISILRLWVIRIPLAYLLAYVLGLGVTGIWIAMAISNIVAALIALAW 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 444

>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins

 Score = 42.1 bits (100), Expect = 4e-04
 Identities = 56/237 (23%), Positives = 93/237 (39%), Gaps = 48/237 (20%)

Query: 100 ELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVS-------VFN-LV 151
           E+  E+ S A+P  L+    P+  LID+  V       L A G+S S       +     
Sbjct: 221 EILKELLSYAIPITLSSLILPLLQLIDSFTVPRR----LQAAGLSESEATALYGILTGRA 276

Query: 152 SKLFNVPLLNITTSF-------VAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSL 204
             L  +P + I T+        ++E  A                     K+L   I+ +L
Sbjct: 277 QPLVQLPTV-IATALSTSLVPAISEAYAKG-----------------DKKELRRRINQAL 318

Query: 205 ALAAGIGIAEALALSFGSGFLMNIM-GIPADSPMRVPAENFLNLRAFGAPPIVIALAAQG 263
            L   IG+  A+ L+  +  +  ++ G      +       L + A     + +      
Sbjct: 319 RLTLLIGLPAAVGLAVLAEPINTLLFGDSEGGLI-------LQILAPSILFLSLQQVTAA 371

Query: 264 AFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIW 320
             +G    K P+  +  G L+  +L+ +LI    FGI GAAIATVI  +L+A +L  
Sbjct: 372 ILQGLGKVKIPVINLLIGLLVKIVLNYVLIP--IFGIYGAAIATVIG-FLVAALLNL 425

The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 434

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 53/223 (23%), Positives = 80/223 (35%), Gaps = 27/223 (12%)

Query: 104 EIWSIALPAALALAADPIASLIDTA--FVGHLGSVELAAVGVSVSVFNLVSKLFNVPL-L 160
           E+  + LP  L +  +   SL       +G LG+  LAA  +     N  S LF VPL +
Sbjct: 230 ELLRLGLPIGLTIFFE--VSLFAAVALLMGRLGTTVLAAHQI---ALNFASLLFMVPLGI 284

Query: 161 NITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSF 220
           ++  + V    A+                         +    L L  G     AL L  
Sbjct: 285 SMAAT-VRVGFAL---------------GAGDPADARRAGLVGLGLGVGFAALTALLLLL 328

Query: 221 GSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLY-AIG 279
               +  +     D  +   A + L   A       I + A GA RG+ DT+ P   A+ 
Sbjct: 329 FPEQIAGL--YTNDPAVIALAASLLVFAALFQLFDGIQVVAAGALRGYKDTRVPFLLALI 386

Query: 280 AGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKL 322
           +   I   L  +L F    G  G  I  +I   L A +L+W+ 
Sbjct: 387 SYWGIGLPLGYLLAFTTGLGAFGVWIGLIIGLALAAILLLWRF 429

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|236576 PRK09575, vmrA, multidrug efflux pump VmrA; Reviewed

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 10/127 (7%)

Query: 191 QQGKKLLPS----ISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLN 246
           ++G+  L      ++T L L   +G   ++ L   +   +   G  A+      A  ++ 
Sbjct: 79  KRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQG--AEGRTLELALQYIQ 136

Query: 247 LRAFGAPPIVIALAAQGAFR--GFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAA 304
           +  +G    + A+A     R     +  T L  IGA  LIN +LD + I +  +G+ GAA
Sbjct: 137 VLIWGCLFTLGAIALPFLLRNDESPNLATGLMVIGA--LINIVLDYLFIGWLDWGLTGAA 194

Query: 305 IATVISE 311
           IAT +++
Sbjct: 195 IATALAQ 201

Length = 453

>gnl|CDD|217323 pfam03023, MVIN, MviN-like protein

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 27/230 (11%)

Query: 98  FDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNV 157
            D+      ++ALP  L ++   +  LIDTA    L    ++ +  +  ++ L   +F V
Sbjct: 193 RDKGVKRFLALALPTLLGVSVSQLNLLIDTALASFLAEGSISYLYYADRIYQLPLGIFGV 252

Query: 158 PLLNITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALA 217
            +  +    ++                  H  +    + L  +  ++ L   + I  +  
Sbjct: 253 SVSTVLLPRLSR-----------------HAKDGDWDEFLDLLDQAIRLTLLLMIPASFG 295

Query: 218 LSFGSGFLMNIM---GI--PADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTK 272
           L   S  +++++   G   P D          L   A G  P  +       F    DTK
Sbjct: 296 LLVLSDPIVSVLYERGAFSPEDVTATAGV---LAAYALGLIPYALVKLLSRVFYAREDTK 352

Query: 273 TPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKL 322
           TP        ++N +L   L+     G+ G A+AT +S ++    L + L
Sbjct: 353 TPFKISLISAVLNILLS--LLLLPPLGVVGLALATSLSAWINLVFLYYIL 400

Deletion of the mviN virulence gene in Salmonella enterica serovar. Typhimurium greatly reduces virulence in a mouse model of typhoid-like disease. Open reading frames encoding homologues of MviN have since been identified in a variety of bacteria, including pathogens and non-pathogens and plant-symbionts. In the nitrogen-fixing symbiont Rhizobium tropici, mviN is required for motility. The MviM protein is predicted to be membrane-associated. Length = 452

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	380
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	100.0
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	100.0
PRK00187	464	multidrug efflux protein NorA; Provisional	100.0
PRK10189	478	MATE family multidrug exporter; Provisional	100.0
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.98
PRK01766	456	multidrug efflux protein; Reviewed	99.97
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.92
PRK00187	464	multidrug efflux protein NorA; Provisional	99.91
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.9
PRK01766	456	multidrug efflux protein; Reviewed	99.89
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.87
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.87
PRK10189	478	MATE family multidrug exporter; Provisional	99.87
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.86
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.82
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.79
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	99.78
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.76
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.76
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.75
PRK15099	416	O-antigen translocase; Provisional	99.74
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.74
PRK15099	416	O-antigen translocase; Provisional	99.68
PRK10459	492	colanic acid exporter; Provisional	99.67
COG2244	480	RfbX Membrane protein involved in the export of O-	99.66
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.45
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.23
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.21
PRK10459	492	colanic acid exporter; Provisional	99.06
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	99.05
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	98.84
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	98.78
KOG1347	473	consensus Uncharacterized membrane protein, predic	98.66
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	98.47
COG2244	480	RfbX Membrane protein involved in the export of O-	98.37
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	98.09
KOG2864	530	consensus Nuclear division RFT1 protein [Cell cycl	98.05
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	96.66
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	94.33
COG4267	467	Predicted membrane protein [Function unknown]	93.88
COG4267	467	Predicted membrane protein [Function unknown]	87.33

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=100.00  E-value=1.2e-34  Score=287.04  Aligned_cols=260  Identities=30%  Similarity=0.451  Sum_probs=239.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhcc
Q 039534           98 FDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQG  177 (380)
Q Consensus        98 ~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~  177 (380)
                      .++..|+++++++|++++++++.+++.+|++++||++++++||.++++++.++.        .....++..+..++++|+
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~--------~~~~~gl~~g~~~liaq~   83 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI--------IAIFIGLGTGTTVLVAQA   83 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH--------HHHHHHHHHhHHHHHHHH
Confidence            556789999999999999999999999999999999999999999999998887        444666777778899999


Q ss_pred             CCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHH
Q 039534          178 SDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVI  257 (380)
Q Consensus       178 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l  257 (380)
                      +|++|+          +++++..++++.+.++++++..++.+.+.++++.+++.+  +|+.+.+.+|+++..++.|+..+
T Consensus        84 ~Ga~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~--~~v~~~a~~Yl~i~~~~~~~~~~  151 (455)
T COG0534          84 IGAGDR----------KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAP--AEVLELAAEYLRIILLGAPFALL  151 (455)
T ss_pred             HcCCch----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HhHHHHHHHHHHHHHHHHHHHHH
Confidence            999988          999999999999999999999999999999999999964  44999999999999999999999


Q ss_pred             HHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHh-hc-CChhHHHHHHHHHHHHHHHHHHHHHhcccc---c---c
Q 039534          258 ALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFF-FH-FGIGGAAIATVISEYLIAFILIWKLSDNVL---L---M  329 (380)
Q Consensus       258 ~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~-~~-~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~---~---~  329 (380)
                      +.++.+++|+.||+|.+++++++++++|+++||+|+++ ++ +|+.|+++||.+++++.+++.+++++++++   .   .
T Consensus       152 ~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~  231 (455)
T COG0534         152 SFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKK  231 (455)
T ss_pred             HHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhh
Confidence            99999999999999999999999999999999999999 57 999999999999999999999999877663   1   2


Q ss_pred             CCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHccCchhhhhhh
Q 039534          330 SPDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIPWLVIR  378 (380)
Q Consensus       330 ~~~~~~~~~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~lG~~~~~~~~  378 (380)
                      .++++++.++++++.|.|..++++++...+.+++.+.+++|+++ .+++
T Consensus       232 ~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~-lAa~  279 (455)
T COG0534         232 LLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVA-LAAY  279 (455)
T ss_pred             ccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHH-HHHH
Confidence            24788899999999999999999999999999999999999888 4444

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=100.00  E-value=3.6e-31  Score=261.84  Aligned_cols=258  Identities=24%  Similarity=0.340  Sum_probs=226.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccC
Q 039534          100 ELGLEIWSIALPAALALAADPIASLIDTAFVGHL-GSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGS  178 (380)
Q Consensus       100 ~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~l-g~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~  178 (380)
                      +..|+++++++|.++++++..+++.+|+.++|++ |++++||++++.++.++...        ...++..+.+++++|++
T Consensus         6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~--------~~~~~~~g~~~lvsq~~   77 (441)
T PRK10367          6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFM--------LLLFLRMSTTGLTAQAF   77 (441)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHh
Confidence            3469999999999999999999999999999998 66789999999988877632        23445556678999999


Q ss_pred             CCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHH
Q 039534          179 DDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIA  258 (380)
Q Consensus       179 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~  258 (380)
                      |++|+          +++++..++++.++++++++..++...+.++++.+++.  |+|+.+.+.+|+++.+++.|+..++
T Consensus        78 Ga~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~--~~~v~~~a~~Yl~i~~~~~~~~~~~  145 (441)
T PRK10367         78 GAKNP----------QALARALVQPLLLALGAGALIALLRTPLIDLALHIVGG--SEAVLEQARRFLEIRWLSAPASLAN  145 (441)
T ss_pred             CCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988          99999999999999999999998888899999999985  5679999999999999999999999


Q ss_pred             HHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcccccc--C---CCC
Q 039534          259 LAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLM--S---PDI  333 (380)
Q Consensus       259 ~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~~--~---~~~  333 (380)
                      .++.+++||.||++.++++++++.++|+++|++|++++++|+.|+++||.+++++.+++.+++++++++..  +   .+.
T Consensus       146 ~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~  225 (441)
T PRK10367        146 LVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKT  225 (441)
T ss_pred             HHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhh
Confidence            99999999999999999999999999999999999988999999999999999999888777765533211  1   122


Q ss_pred             Ch-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHccCchhhhhhh
Q 039534          334 DG-RRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIPWLVIR  378 (380)
Q Consensus       334 ~~-~~~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~lG~~~~~~~~  378 (380)
                      ++ +.++++++.|.|...+...+..++.+.+.+++++|+++ .++.
T Consensus       226 ~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~a-lAa~  270 (441)
T PRK10367        226 AWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDI-IAVN  270 (441)
T ss_pred             hhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHH
Confidence            22 35789999999999999999999999999999999987 4444

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=100.00  E-value=2.4e-30  Score=257.80  Aligned_cols=257  Identities=19%  Similarity=0.162  Sum_probs=226.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhcc
Q 039534           98 FDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQG  177 (380)
Q Consensus        98 ~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~  177 (380)
                      +++..|+++++++|.++++++..+...+|+++++++|++++||++++.++.++..        ....++..+.+++++|+
T Consensus         5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~--------~~~~gl~~~~~~i~aq~   76 (464)
T PRK00187          5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVS--------IFCVGVIAAVGTLVAIR   76 (464)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence            4456799999999999999999999999999999999999999999999877763        33456666778899999


Q ss_pred             CCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHH
Q 039534          178 SDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVI  257 (380)
Q Consensus       178 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l  257 (380)
                      +|++|+          +++++.+++++.+.+.++++..++++ +.++++.++++  |+|+.+.+.+|+++.+++.|+..+
T Consensus        77 ~Ga~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~--~~ev~~~~~~Yl~i~~~~~~~~~l  143 (464)
T PRK00187         77 HGAGDI----------EGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQ--APQNVDAAMQFLHLLPFALPGYLS  143 (464)
T ss_pred             hcCCCh----------hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998          99999999999999999998877655 67999999985  577999999999999999999999


Q ss_pred             HHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhh----cCChhHHHHHHHHHHHHHHHHHHHHHhccccc--cC-
Q 039534          258 ALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFF----HFGIGGAAIATVISEYLIAFILIWKLSDNVLL--MS-  330 (380)
Q Consensus       258 ~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~----~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~--~~-  330 (380)
                      ...+++++|+.||+++++++++++.++|+++||+|+++.    ++|+.|+++|+.+++++..++++++++++++.  .+ 
T Consensus       144 ~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~  223 (464)
T PRK00187        144 FMALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPL  223 (464)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhh
Confidence            999999999999999999999999999999999999763    58999999999999998887776666543321  11 


Q ss_pred             ----CCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHccCchhhh
Q 039534          331 ----PDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIPWL  375 (380)
Q Consensus       331 ----~~~~~~~~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~lG~~~~~  375 (380)
                          .+.+++.++++++.++|..++.+.+...+.+.+.+++++|+++.+
T Consensus       224 ~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alA  272 (464)
T PRK00187        224 RKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLA  272 (464)
T ss_pred             hccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence                245677899999999999999999999999999999999998854

>PRK10189 MATE family multidrug exporter; Provisional

Probab=100.00  E-value=2.4e-30  Score=258.36  Aligned_cols=258  Identities=21%  Similarity=0.257  Sum_probs=229.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCC
Q 039534          100 ELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSD  179 (380)
Q Consensus       100 ~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g  179 (380)
                      +.+|+++++++|.++++++..+.+.+|+.+++++|++++||++++.++..+.        .....+++.+.+++++|++|
T Consensus        26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~--------~~~~~gl~~g~~~lvsq~~G   97 (478)
T PRK10189         26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI--------MAFFAAIDLGTTVVVAFSLG   97 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhc
Confidence            4489999999999999999999999999999999999999999999997765        33456677777889999999


Q ss_pred             CCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHH
Q 039534          180 DGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIAL  259 (380)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~  259 (380)
                      ++|+          +++++..++++.+++.++++.+++.+.++++++.++.++.|+|+.+.+.+|+++..++.|+..++.
T Consensus        98 a~~~----------~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~  167 (478)
T PRK10189         98 KRDR----------RRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITL  167 (478)
T ss_pred             CCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998          999999999999999999999998999999999999633468899999999999999999999999


Q ss_pred             HHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhh----cCChhHHHHHHHHHHHHHHHHHHHHHhcc-cccc--C--
Q 039534          260 AAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFF----HFGIGGAAIATVISEYLIAFILIWKLSDN-VLLM--S--  330 (380)
Q Consensus       260 ~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~----~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~-~~~~--~--  330 (380)
                      ++.+++||.||++.++++++++.++|++++++|+++.    ++|+.|+++|+.+++++..++.++++.++ ++..  +  
T Consensus       168 ~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~  247 (478)
T PRK10189        168 IGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLK  247 (478)
T ss_pred             HHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeec
Confidence            9999999999999999999999999999999999863    79999999999999999988876666432 2111  1  


Q ss_pred             ---CCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHccCchhhh
Q 039534          331 ---PDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIPWL  375 (380)
Q Consensus       331 ---~~~~~~~~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~lG~~~~~  375 (380)
                         .+.+++.++++++.|.|..++.+.+...+.+.+.+++++|+++.+
T Consensus       248 ~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~A  295 (478)
T PRK10189        248 SYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIA  295 (478)
T ss_pred             cccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence               124678899999999999999999999999999999999998743

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.98  E-value=4.9e-30  Score=255.04  Aligned_cols=261  Identities=16%  Similarity=0.191  Sum_probs=231.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhh
Q 039534           97 KFDELGLEIWSIALPAALALAADPIASLIDTAFVGHL-GSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKS  175 (380)
Q Consensus        97 ~~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~l-g~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va  175 (380)
                      .+++..|+++++++|..++++...+++.+|+.++|++ |++++++++++.++.++..        ....++..+.+++++
T Consensus         6 ~~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~--------~~~~~~~~g~~~lvs   77 (453)
T PRK09575          6 MNQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIIL--------GIGLMVGMGTGSLLS   77 (453)
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH--------HHHHHHhccHHHHHH
Confidence            4456779999999999999999999999999999995 9999999999999887763        234455556678999


Q ss_pred             ccCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHH
Q 039534          176 QGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPI  255 (380)
Q Consensus       176 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~  255 (380)
                      |++|++|+          |++++.+++++.+.+.++++++++.+.++++++.+++.  |+++.+.+.+|+++.+++.|+.
T Consensus        78 q~~Ga~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~--~~~~~~~~~~yl~i~~~~~~~~  145 (453)
T PRK09575         78 IKRGEGDL----------EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGA--EGRTLELALQYIQVLIWGCLFT  145 (453)
T ss_pred             HHhcCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--ChhhHHHHHHHHHHHHHHHHHH
Confidence            99999988          99999999999999999999999999999999999985  5669999999999999999999


Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhccccccC-----
Q 039534          256 VIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMS-----  330 (380)
Q Consensus       256 ~l~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~~~-----  330 (380)
                      .++.....++|+.||++.+++.++++.++|+++|++|++.+++|+.|+++|+.+++++..++.+++++++++..+     
T Consensus       146 ~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~  225 (453)
T PRK09575        146 LGAIALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKE  225 (453)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeecc
Confidence            999999999999999999999999999999999999999889999999999999999999988777765443322     


Q ss_pred             CCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHccCchhhhhh
Q 039534          331 PDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIPWLVI  377 (380)
Q Consensus       331 ~~~~~~~~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~lG~~~~~~~  377 (380)
                      ++++++.+++.++.|.|..++...+...+.+.+.+.+++|+....++
T Consensus       226 ~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa  272 (453)
T PRK09575        226 LRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGA  272 (453)
T ss_pred             CCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            24567778999999999999999999999999999999997533443

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.97  E-value=1.5e-28  Score=244.75  Aligned_cols=258  Identities=19%  Similarity=0.238  Sum_probs=228.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhc
Q 039534           97 KFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQ  176 (380)
Q Consensus        97 ~~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~  176 (380)
                      +.++.+|+++++++|.+++++..++.+.+|..+++++|++++++++++.++..+.        .....++..+.++.++|
T Consensus         6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~--------~~~~~g~~~a~~~~vs~   77 (456)
T PRK01766          6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV--------ILFGHGLLLALTPIVAQ   77 (456)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence            4456689999999999999999999999999999999999999999887765544        33355666777899999


Q ss_pred             cCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHH
Q 039534          177 GSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIV  256 (380)
Q Consensus       177 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~  256 (380)
                      ++|++|+          +++++.+++++.+.+.++++++++++.+++++..+++.  |+++.+.+..|+++.+++.|+..
T Consensus        78 ~~g~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~~~~~yl~i~~~~~~~~~  145 (456)
T PRK01766         78 LNGAGRR----------ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNL--EPEVADIAVGYLHALLWGIPAYL  145 (456)
T ss_pred             HhcCCCh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988          99999999999999999999999999999999999985  57789999999999999999999


Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHh----hcCChhHHHHHHHHHHHHHHHHHHHHHhcccccc---
Q 039534          257 IALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFF----FHFGIGGAAIATVISEYLIAFILIWKLSDNVLLM---  329 (380)
Q Consensus       257 l~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~----~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~~---  329 (380)
                      ++.++++++|+.||++++++.++++.++|+++|++|+++    +.+|+.|+++|+.+++++..++.+++++++++..   
T Consensus       146 ~~~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~  225 (456)
T PRK01766        146 LYQVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFR  225 (456)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHH
Confidence            999999999999999999999999999999999999864    3689999999999999999998888876544311   


Q ss_pred             ---C-CCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHccCchhh
Q 039534          330 ---S-PDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIPW  374 (380)
Q Consensus       330 ---~-~~~~~~~~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~lG~~~~  374 (380)
                         + .+.+++.++++++.+.|...+.+.+...+.+.+.+++++|+++.
T Consensus       226 ~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~l  274 (456)
T PRK01766        226 LFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTV  274 (456)
T ss_pred             hhccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHH
Confidence               1 23567789999999999999999999999999999999998773

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.92  E-value=7.2e-23  Score=195.97  Aligned_cols=244  Identities=36%  Similarity=0.489  Sum_probs=216.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCCCCcccccchh
Q 039534          111 PAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQIDHGVE  190 (380)
Q Consensus       111 P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~~~~~~~~~~~  190 (380)
                      |.++++++..+...+|+.+++++|++++++++++.++.++.        .....++..+..+.+++++|++|+       
T Consensus         1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~--------~~~~~~i~~~~~~~~s~~~g~~~~-------   65 (342)
T TIGR00797         1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL--------FSILMGLGTATTALVAQAVGAGNY-------   65 (342)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH--------HHHHHHHHHhHHHHHHHHHCCCCh-------
Confidence            78899999999999999999999999999999998776655        334566777788999999998887       


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCC
Q 039534          191 QQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMD  270 (380)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~l~g~g~  270 (380)
                         +++++..++.+.+.+.++++.+++.+.+++++..+++.  |++..+.+..|++++++..++..++....+++|+.||
T Consensus        66 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~  140 (342)
T TIGR00797        66 ---QRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGA--DGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGD  140 (342)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence               89999999999999999999999999999999999874  4568889999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHH-hhc-CChhHHHHHHHHHHHHHHHHHHHHHhccccc-----cCCCCChHHHHHHHH
Q 039534          271 TKTPLYAIGAGNLINAILDPILIF-FFH-FGIGGAAIATVISEYLIAFILIWKLSDNVLL-----MSPDIDGRRVVHYLK  343 (380)
Q Consensus       271 ~~~~~~~~i~~~~i~i~l~~~li~-~~~-~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~l~  343 (380)
                      ++.+++..+++.++++++++++++ .++ +|+.|+++++.+++++..++.+++.+|+++.     .+.+++++.++++++
T Consensus       141 ~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~  220 (342)
T TIGR00797       141 TKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLK  220 (342)
T ss_pred             chHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHH
Confidence            999999999999999999999987 567 8899999999999999998887777653221     124567788999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHccCchhh
Q 039534          344 SGGLLIGRTIAVLLTMTLATSMAAREGPIPW  374 (380)
Q Consensus       344 ~~~p~~~~~l~~~~~~~~~~~~~~~lG~~~~  374 (380)
                      .+.|.+...+..++...+.+.+++.+|+.+.
T Consensus       221 ~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v  251 (342)
T TIGR00797       221 LGLPIAFRVILESLSFALLALLVARLGSIAL  251 (342)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            9999999999999999999999999997653

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.91  E-value=1.6e-22  Score=201.65  Aligned_cols=210  Identities=18%  Similarity=0.125  Sum_probs=189.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhc
Q 039534           97 KFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQ  176 (380)
Q Consensus        97 ~~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~  176 (380)
                      .+++.+|+++++++|..++++++.....+|..+++++|++++|+++++.++..+.        .....+++.+.+++++|
T Consensus       230 ~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~--------~~~~~gi~~a~~~lvgq  301 (464)
T PRK00187        230 PSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA--------FMVPVGLSYAVTMRVGQ  301 (464)
T ss_pred             CCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence            3456789999999999999999999999999999999999999999999988876        33456677777889999


Q ss_pred             cCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCc---ccHHHHHHHHHHHHHhHH
Q 039534          177 GSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADS---PMRVPAENFLNLRAFGAP  253 (380)
Q Consensus       177 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~a~~~l~~~~~~~~  253 (380)
                      ++|++|+          +++++..++++.+++.++++++++++.+++++..++..++|+   |+.+.+..|+++.+++.+
T Consensus       302 ~~Ga~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~  371 (464)
T PRK00187        302 HYGAGRL----------LEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFEL  371 (464)
T ss_pred             HHcCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            9999998          999999999999999999999999999999999999632233   688999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHH-HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhc
Q 039534          254 PIVIALAAQGAFRGFMDTKTPLYAIGAGN-LINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSD  324 (380)
Q Consensus       254 ~~~l~~~~~~~l~g~g~~~~~~~~~i~~~-~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~  324 (380)
                      +.+++.++.+++||.||++.++++++++. ++|+++++++++.+++|+.|+++++.+++++..++.....+.
T Consensus       372 ~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~  443 (464)
T PRK00187        372 FDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW  443 (464)
T ss_pred             hhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998 999999999998888999999999999999988777655543

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.90  E-value=1.6e-22  Score=199.71  Aligned_cols=253  Identities=21%  Similarity=0.160  Sum_probs=231.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccC
Q 039534           99 DELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGS  178 (380)
Q Consensus        99 ~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~  178 (380)
                      +.+.|++++++.|.++..+.++..+.+++.++||+|+.++++.+++....+...       .++..++.++++++.+|++
T Consensus        24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~-------~s~~~gl~~aletlcgQa~   96 (473)
T KOG1347|consen   24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITG-------VSILLGLQLALDTLCGQAF   96 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccc-------hHHhhccchhhhcchHhhh
Confidence            455699999999999999999999999999999999999999999999988854       5667777888889999999


Q ss_pred             CCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHH
Q 039534          179 DDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIA  258 (380)
Q Consensus       179 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~  258 (380)
                      |++++          +......+++..+....++|++. +|.+.++|+..++++  |++...+..|.+++.++.+.+...
T Consensus        97 ga~~~----------~~lg~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~--~~i~~~a~~y~~~~ip~~~a~~~~  163 (473)
T KOG1347|consen   97 GAKKF----------TALGVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQD--PDISRDAGSYAFMLIPGLFSYAVS  163 (473)
T ss_pred             ccccc----------chhhHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCC--hhHHHHHhhhHhhhcchhhhhHHH
Confidence            99999          99999999999999999999999 788999999999975  669999999999999999999999


Q ss_pred             HHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhccccccC---CCCCh
Q 039534          259 LAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMS---PDIDG  335 (380)
Q Consensus       259 ~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~~~---~~~~~  335 (380)
                      ..+..++|+|+++.+..++..++.++|+.++|++++.+++|+.|++++..+++++.......|+........   ..++.
T Consensus       164 ~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~~  243 (473)
T KOG1347|consen  164 FPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGEF  243 (473)
T ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHhh
Confidence            999999999999999999999999999999999999999999999999999999999999888865442111   12237


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHccCc
Q 039534          336 RRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGP  371 (380)
Q Consensus       336 ~~~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~lG~  371 (380)
                      ++++++++.++|...+.+.|++.++++..+.|.+|.
T Consensus       244 ~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~n  279 (473)
T KOG1347|consen  244 DSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGN  279 (473)
T ss_pred             hhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCC
Confidence            789999999999999999999999999999999997

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.89  E-value=1.8e-21  Score=193.95  Aligned_cols=292  Identities=15%  Similarity=0.096  Sum_probs=223.6

Q ss_pred             hhhhccCCCcccccCCccccCCCCCcccccccccccccccccCCCCCCCCCCCccCCCCCCCCcccccCc---hhhhhH-
Q 039534           13 LCSMHSSSSSYYYNSKQTKSSSTPGKFRIFNRRNLTCSARLKSAPHKKKTASTSLQTSPPDPSRFSLSGS---FSLINI-   88 (380)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-   88 (380)
                      +..+..+.+++..+.++++.|...+......+....+.+.....+.+. -...........+........   ..+.+. 
T Consensus       143 ~~~~~~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~-~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~  221 (456)
T PRK01766        143 AYLLYQVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPE-LGGVGCGVATAIVYWVMFLAMLIYIKRARRF  221 (456)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc-cccccHHHHHHHHHHHHHHHHHHHHHhChhh
Confidence            345667778899999999999999888876655544332211000000 001111000000000000000   011110 


Q ss_pred             --HHHhhc-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 039534           89 --IARLSD-GFKFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTS  165 (380)
Q Consensus        89 --~~~~~~-~~~~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~  165 (380)
                        .+..++ ...+++.+|+++++++|..++.+.+.+...++..+++++|++++|+++++.++.++.        .....+
T Consensus       222 ~~~~~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~--------~~~~~g  293 (456)
T PRK01766        222 RDFRLFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL--------FMLPLS  293 (456)
T ss_pred             hHHHhhccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH--------HHHHHH
Confidence              000111 123456789999999999999999999999999999999999999999999987776        233556


Q ss_pred             hhhhhHHHhhccCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHH
Q 039534          166 FVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFL  245 (380)
Q Consensus       166 l~~~~~~~va~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l  245 (380)
                      ++.+.++.++|++|++|+          +++++..+.++.+++.++++++++++.+++++..+|.  +|+|+.+.+..|+
T Consensus       294 l~~a~~~~v~~~~Ga~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~--~d~~v~~~~~~~l  361 (456)
T PRK01766        294 LAMALTIRVGFELGAGRT----------LDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYT--DDPEVVALASHLL  361 (456)
T ss_pred             HHHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence            666677899999999998          9999999999999999999999999999999999997  4688999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHhccCCchHHHHHHHHHH-HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhc
Q 039534          246 NLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGN-LINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSD  324 (380)
Q Consensus       246 ~~~~~~~~~~~l~~~~~~~l~g~g~~~~~~~~~i~~~-~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~  324 (380)
                      ++.++..++.+++.+..+++||.||++.++++++++. ++++++.+++.+.+++|+.|+++|+.+++++..++.++++++
T Consensus       362 ~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~  441 (456)
T PRK01766        362 LFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK  441 (456)
T ss_pred             HHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988 789999999988778999999999999999999988877765


Q ss_pred             c
Q 039534          325 N  325 (380)
Q Consensus       325 ~  325 (380)
                      .
T Consensus       442 ~  442 (456)
T PRK01766        442 L  442 (456)
T ss_pred             H
Confidence            4

>TIGR01695 mviN integral membrane protein MviN

Probab=99.87  E-value=9.3e-20  Score=183.56  Aligned_cols=289  Identities=18%  Similarity=0.100  Sum_probs=217.9

Q ss_pred             hhhhccCCCcccccCCccccCCCCCcccccccccccccccccCCCCCCCCCCCccCCCCCCCCcccccC---chhhhhHH
Q 039534           13 LCSMHSSSSSYYYNSKQTKSSSTPGKFRIFNRRNLTCSARLKSAPHKKKTASTSLQTSPPDPSRFSLSG---SFSLINII   89 (380)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~   89 (380)
                      +.++.+..+++..+.++.+.|+..+..................   +.....  ..-+.-.+.......   ...+..  
T Consensus       136 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~---g~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~--  208 (502)
T TIGR01695       136 LISLAAVFGGILNARKRFFIPSFSPILFNIGVILSLLFFDWNY---GQYSLA--LAIGVLIGGVAQLLIQLPFLRKAG--  208 (502)
T ss_pred             HHHHHHHHHHHHhccCeeHHHHHHHHHHHHHHHHHHHHHHccc---chHHHH--HHHHHHHHHHHHHHHHHHHHHHCC--
Confidence            4566777788899999999998888877655433221111100   000000  000000000000000   000000  


Q ss_pred             HHhhccc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 039534           90 ARLSDGF-KFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVA  168 (380)
Q Consensus        90 ~~~~~~~-~~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~  168 (380)
                      .+.+... .+++..|+++++++|..++++...+...+|+.+.+.+|.+++++++.+.++.++..       .....++..
T Consensus       209 ~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~-------~~~~~~i~~  281 (502)
T TIGR01695       209 FLLKPRFNFRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPL-------GIFGISLST  281 (502)
T ss_pred             CcccCcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence            0111111 24567899999999999999999999999999977789889999999888877653       223556777


Q ss_pred             hhHHHhhccCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCC--CcccHHHHHHHHH
Q 039534          169 EEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPA--DSPMRVPAENFLN  246 (380)
Q Consensus       169 ~~~~~va~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~a~~~l~  246 (380)
                      ...|.+++++|++|.          +++++.+++++.....+++|++++++.+++++..++++++  |+|....+..+++
T Consensus       282 ~~~P~~s~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~  351 (502)
T TIGR01695       282 VLLPKLSRHASEGNW----------NELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILA  351 (502)
T ss_pred             HHHHHHHHHHhcCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence            789999999988887          9999999999999999999999999999999999997643  5667888999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhccc
Q 039534          247 LRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNV  326 (380)
Q Consensus       247 ~~~~~~~~~~l~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~  326 (380)
                      +++++.++..++..+..++++.||++.+++.++++.++|++++++++..  +|+.|+++|+.+++.+..++..++++|+.
T Consensus       352 ~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~~  429 (502)
T TIGR01695       352 AYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRRL  429 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999764  89999999999999999998888887664


Q ss_pred             c
Q 039534          327 L  327 (380)
Q Consensus       327 ~  327 (380)
                      +
T Consensus       430 ~  430 (502)
T TIGR01695       430 K  430 (502)
T ss_pred             C
Confidence            3

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.87  E-value=3e-20  Score=184.88  Aligned_cols=207  Identities=14%  Similarity=0.091  Sum_probs=185.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCh-hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhc
Q 039534           98 FDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGS-VELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQ  176 (380)
Q Consensus        98 ~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~-~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~  176 (380)
                      +++..|+++++++|..++.....+...+...+++++|+ +++|+++++.++.++.        .....+++.+.+++++|
T Consensus       229 ~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~--------~~~~~gi~~a~~~lvg~  300 (453)
T PRK09575        229 NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY--------YLVAEGIAEGMQPPVSY  300 (453)
T ss_pred             CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH--------HHHHHHHHHhhHHHHHH
Confidence            45678999999999999999999999999999999996 5899999999888776        33467777778999999


Q ss_pred             cCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHH
Q 039534          177 GSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIV  256 (380)
Q Consensus       177 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~  256 (380)
                      ++|++|+          |++++..++++.+++..+++.+++++.+++++..+|.. +|+|+.+.+..|+++.+++.|+..
T Consensus       301 ~~Ga~~~----------~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~-~~~~v~~~~~~~l~i~~~~~~~~~  369 (453)
T PRK09575        301 YFGARQY----------DNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNS-GDSELIAETIVGIRLHLFAMFLDG  369 (453)
T ss_pred             HhcCCCh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcC-CChHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999          99999999999999999999999999999999999974 357799999999999999999999


Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcc
Q 039534          257 IALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDN  325 (380)
Q Consensus       257 l~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~  325 (380)
                      ++.+..+++||.||++.++++++...++++++.+++...  +|+.|+++|+.+++++..++.+++++++
T Consensus       370 ~~~~~~~~~~~~g~~~~~~~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~~  436 (453)
T PRK09575        370 FLVLASAYFMAVNQGGKALFISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWRD  436 (453)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998888899988877543  8999999999999999988887766554

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.87  E-value=6.1e-20  Score=183.53  Aligned_cols=210  Identities=14%  Similarity=0.153  Sum_probs=190.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhcc
Q 039534           98 FDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQG  177 (380)
Q Consensus        98 ~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~  177 (380)
                      +.+.+|+++++++|..++.+...+...+-+.+++++|++++||++++.++.++.        .....+++.+.+++++|+
T Consensus       254 ~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~--------~~~~~gi~~A~~~lvg~~  325 (478)
T PRK10189        254 NFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI--------NLPGNALGSASTIITGTR  325 (478)
T ss_pred             CHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence            446789999999999999999999999999999999999999999999998776        334667777889999999


Q ss_pred             CCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHH
Q 039534          178 SDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVI  257 (380)
Q Consensus       178 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l  257 (380)
                      +|++|.          +++++..+.+..+++..++.++++++.+++++..+|.  +|+|+.+.+..++++.++..|+.++
T Consensus       326 ~Ga~~~----------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt--~d~~v~~~~~~~l~~~~~~~~~~~~  393 (478)
T PRK10189        326 LGKGQI----------AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYT--QDPDVKHVVKILIWLNALFMPIWAA  393 (478)
T ss_pred             hCCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998          9999999999999999999999999999999999997  4688999999999999999999999


Q ss_pred             HHHHHHHHhccCCchHHHHHHHHHH-HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 039534          258 ALAAQGAFRGFMDTKTPLYAIGAGN-LINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVL  327 (380)
Q Consensus       258 ~~~~~~~l~g~g~~~~~~~~~i~~~-~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~  327 (380)
                      +.+..+++||.||++.++++++++. ++.+++.+++....++|+.|.+++..+++.+..++.++.+++.++
T Consensus       394 ~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W  464 (478)
T PRK10189        394 SWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRW  464 (478)
T ss_pred             HHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence            9999999999999999999999886 678888888877678999999999999999999888877766544

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.86  E-value=4.1e-20  Score=183.37  Aligned_cols=211  Identities=24%  Similarity=0.266  Sum_probs=194.0

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhh
Q 039534           96 FKFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKS  175 (380)
Q Consensus        96 ~~~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va  175 (380)
                      ..+++..|+++++++|..++++.+.....+-+.+++++|++.+||++++.++..+.        .....+++.+.+++++
T Consensus       234 ~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~--------~~~~~gi~~a~~~lvG  305 (455)
T COG0534         234 KPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI--------FMPPFGIAQAVTILVG  305 (455)
T ss_pred             CCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence            45668899999999999999999999999999999999999999999999999887        4446777778899999


Q ss_pred             ccCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHH
Q 039534          176 QGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPI  255 (380)
Q Consensus       176 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~  255 (380)
                      |++|++|+          +++++..+.+..+++.+++..+++++++++++..+|..  |+|+.+.+..++++.++..++.
T Consensus       306 ~~~Ga~~~----------~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~--~~~v~~~~~~~l~i~~~~~~~~  373 (455)
T COG0534         306 QNLGAGNY----------KRARRAARLALKLSLLIALLIALLLLLFREPIISLFTT--DPEVIALAVILLLIAALFQPFD  373 (455)
T ss_pred             HHhCCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999          99999999999999999999999999999999999985  4889999999999999999999


Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHHH-HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 039534          256 VIALAAQGAFRGFMDTKTPLYAIGAGN-LINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVL  327 (380)
Q Consensus       256 ~l~~~~~~~l~g~g~~~~~~~~~i~~~-~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~  327 (380)
                      +.+.+..+++||.||++.++++++++. ++.+++.+++.+.. +|..|.+++..+++.+..++..++++++++
T Consensus       374 ~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~  445 (455)
T COG0534         374 GIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRW  445 (455)
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999987 56788777777655 999999999999999999999888876544

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.82  E-value=5.9e-18  Score=169.83  Aligned_cols=211  Identities=18%  Similarity=0.224  Sum_probs=175.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----ChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHh
Q 039534           99 DELGLEIWSIALPAALALAADPIASLIDTAFVGHL----GSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVK  174 (380)
Q Consensus        99 ~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~l----g~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~v  174 (380)
                      ++.+|+++++++|..++++...+.+.+|+.+++++    |.....+.+..+...++...+..+| ..+..++..+..|..
T Consensus       221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~~  299 (488)
T TIGR02900       221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPDI  299 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999983    2211222233222222333333344 455777888889999


Q ss_pred             hccCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHH
Q 039534          175 SQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPP  254 (380)
Q Consensus       175 a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~  254 (380)
                      ++++|++|+          ++.++.+++...+...+++|.++++..+++++..+++.++      .+..+++++++..++
T Consensus       300 s~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~------~~~~~l~i~~~~~~~  363 (488)
T TIGR02900       300 SEAMAKKNY----------SSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP------DAGNFIRVLAPSFPF  363 (488)
T ss_pred             HHHHHcCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------chHHHHHHHHHHHHH
Confidence            999888877          8999999999999999999999999999999999997432      378899999999999


Q ss_pred             HHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhccc
Q 039534          255 IVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNV  326 (380)
Q Consensus       255 ~~l~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~  326 (380)
                      ..++.....++++.||+|.+++.++++.++|++++++++..+.+|+.|+++|+.+++.+..++..++.+|..
T Consensus       364 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~~  435 (488)
T TIGR02900       364 LYFSAPLQSILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKNI  435 (488)
T ss_pred             HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999988545699999999999999999999888887643

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.79  E-value=1.6e-16  Score=157.81  Aligned_cols=211  Identities=22%  Similarity=0.258  Sum_probs=187.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhcc
Q 039534           98 FDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQG  177 (380)
Q Consensus        98 ~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~  177 (380)
                      .++..|++++...|..+......+...+|+.+.+.+++.++++++.+.++.++...++       ..++.+...|..++.
T Consensus       193 ~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~-------~~~i~tv~~P~ls~~  265 (451)
T PF03023_consen  193 RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIF-------AVSISTVVFPKLSRL  265 (451)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence            3445899999999999999999999999999999999999999999999999876444       445555556777776


Q ss_pred             CCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCC--CCCcccHHHHHHHHHHHHHhHHHH
Q 039534          178 SDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGI--PADSPMRVPAENFLNLRAFGAPPI  255 (380)
Q Consensus       178 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~a~~~l~~~~~~~~~~  255 (380)
                      ..++|.          ++.++.+++.+...+++.+|++++++.+++++..++++  .-|.|-.+....++++++++.|+.
T Consensus       266 ~~~~d~----------~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~  335 (451)
T PF03023_consen  266 AAEGDW----------EEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFY  335 (451)
T ss_pred             HhcCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence            555555          99999999999999999999999999999999999863  345566788999999999999999


Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 039534          256 VIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVL  327 (380)
Q Consensus       256 ~l~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~  327 (380)
                      .++..+.+.+.++||+|.|+++++++.++|++++++++..  +|..|.++|+.++.++.+++.+++++|+.+
T Consensus       336 ~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~~~  405 (451)
T PF03023_consen  336 ALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRRLG  405 (451)
T ss_pred             HHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999888775  899999999999999999999888877654

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=99.78  E-value=1.2e-18  Score=148.59  Aligned_cols=161  Identities=28%  Similarity=0.391  Sum_probs=151.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCCCCcccccchh
Q 039534          111 PAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQIDHGVE  190 (380)
Q Consensus       111 P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~~~~~~~~~~~  190 (380)
                      |..+++++..+.+.+|+.+++++|++++++++++..+.++..        ....+++.+.++.++|++|++|+       
T Consensus         1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~--------~~~~g~~~a~~~~~s~~~G~~~~-------   65 (162)
T PF01554_consen    1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILF--------MLIFGLATALQILISQNIGAGDY-------   65 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHH--------HHHHHHHHHHHHHHCCCCCSSST-------
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--------hhcccccccccceeecccccccc-------
Confidence            899999999999999999999999999999999999998874        34677777889999999999998       


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCC
Q 039534          191 QQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMD  270 (380)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~l~g~g~  270 (380)
                         +++++.+++++.+.+.++++.+++++.+.+++..+++.  |+++.+.+.+|+++..+..|+..+.....+++||.||
T Consensus        66 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  140 (162)
T PF01554_consen   66 ---KRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGN--DPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGR  140 (162)
T ss_dssp             ---TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSS--TTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCST
T ss_pred             ---cccccccccccccchhcccchhhhhhhHHHHHHHHhhh--hHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCc
Confidence               99999999999999999999999999999999999985  4669999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHH-HHHHHHHHH
Q 039534          271 TKTPLYAIGAGN-LINAILDPI  291 (380)
Q Consensus       271 ~~~~~~~~i~~~-~i~i~l~~~  291 (380)
                      ++.+++.++++. ++|++++|+
T Consensus       141 ~~~~~~~~~~~~~~~~i~l~yl  162 (162)
T PF01554_consen  141 TKIAMYISIISFWIINIPLAYL  162 (162)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHhC
Confidence            999999999999 999999885

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>TIGR01695 mviN integral membrane protein MviN

Probab=99.76  E-value=1e-15  Score=154.15  Aligned_cols=249  Identities=14%  Similarity=0.073  Sum_probs=189.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhc-cChhhH-HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCCCC
Q 039534          105 IWSIALPAALALAADPIASLIDTAFVGH-LGSVEL-AAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGS  182 (380)
Q Consensus       105 il~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~l-aa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~~~  182 (380)
                      ++|-+.-.++.++...+++.+|..++++ +|+++. ++++++.++.++...++.      ..++..+..+...+   +++
T Consensus         2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~------~~g~~~a~i~~~~~---~~~   72 (502)
T TIGR01695         2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFA------EGAFNSAFVPVFTK---AKK   72 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHH---HHh
Confidence            4567778889999999999999999999 899999 799999988877643322      11223322333333   332


Q ss_pred             cccccchhhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHHH
Q 039534          183 SQIDHGVEQQGKKLLPSISTSLALAAG-IGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAA  261 (380)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~  261 (380)
                      .        + |+.++.+..+...... .++...++.+++++++..++....|++..+.+..|+++++++.|+..+....
T Consensus        73 ~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~  143 (502)
T TIGR01695        73 K--------E-KEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVF  143 (502)
T ss_pred             h--------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2        1 4666666666665554 4444567788899999998842234557788999999999999999999999


Q ss_pred             HHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHH--HHHHHHHHHHHHHHHHHHhcccccc--CCCCChHH
Q 039534          262 QGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAA--IATVISEYLIAFILIWKLSDNVLLM--SPDIDGRR  337 (380)
Q Consensus       262 ~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa--~a~~is~~~~~~l~~~~~~~~~~~~--~~~~~~~~  337 (380)
                      ++++|+.||.+.+++.+++..++++...+++  ..++|..|++  +++.+++.+..++.+++++|++...  +++++++.
T Consensus       144 ~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (502)
T TIGR01695       144 GGILNARKRFFIPSFSPILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFNFRDPG  221 (502)
T ss_pred             HHHHhccCeeHHHHHHHHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCCCCChh
Confidence            9999999999999999999988887743333  3469999998  9999999999888877766543222  23345678


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHccCchh
Q 039534          338 VVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIP  373 (380)
Q Consensus       338 ~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~lG~~~  373 (380)
                      +++.++.+.|..+..+.......+-..+.+.+|+.+
T Consensus       222 ~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~  257 (502)
T TIGR01695       222 LKRFLKLFLPTTLGSSASQITLLINTALASFLEIGS  257 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence            999999999999999999998888888877777755

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.76  E-value=1.6e-16  Score=157.43  Aligned_cols=200  Identities=13%  Similarity=0.090  Sum_probs=167.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCC
Q 039534          100 ELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSD  179 (380)
Q Consensus       100 ~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g  179 (380)
                      +..|++++++.|..++++.......+-+.+++++|++++||++++.++..+.        .....+++.+.+++++|++|
T Consensus       229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~--------~~~~~gl~~a~~~lvg~~~G  300 (441)
T PRK10367        229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFT--------AYALDGFAYAVEAHSGQAYG  300 (441)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH--------HHHHHhHHHHHHHHHHHHHc
Confidence            4679999999999999999999999999999999999999999999998887        34467777788999999999


Q ss_pred             CCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHH
Q 039534          180 DGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIAL  259 (380)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~  259 (380)
                      ++|.          +++++..++++.+++..++.++++++.+++++..+|.  +|+|+.+.+..++++.++..+......
T Consensus       301 a~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt--~d~~v~~~~~~~l~i~~~~~~~~~~~~  368 (441)
T PRK10367        301 ARDG----------SQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLT--SLPQIQQLADRYLIWQVILPLVGVWCY  368 (441)
T ss_pred             CCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999          9999999999999999999999999999999999997  478899999999999987633332444


Q ss_pred             HHHHHHhccC---CchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcc
Q 039534          260 AAQGAFRGFM---DTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDN  325 (380)
Q Consensus       260 ~~~~~l~g~g---~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~  325 (380)
                      ...++++|.+   |++.++++++++..+    .++..  +.+|+.|.++|..+++.+..++..+++++.
T Consensus       369 ~~~~~~~g~lrg~dt~~~~~~~~~~~~~----~~~~~--~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~  431 (441)
T PRK10367        369 LLDGMFIGATRAAEMRNSMAVAAAGFAL----TLLTL--PWLGNHGLWLALTVFLALRGLSLAAIWRRH  431 (441)
T ss_pred             HHHHHhhCccchHHHHHHHHHHHHHHHH----HHHHH--HHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555   599999999887543    11122  258999999999999999998887766544

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.75  E-value=7.3e-16  Score=154.67  Aligned_cols=240  Identities=14%  Similarity=0.156  Sum_probs=192.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhc-cChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCCCCcc
Q 039534          106 WSIALPAALALAADPIASLIDTAFVGH-LGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQ  184 (380)
Q Consensus       106 l~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~~~~~  184 (380)
                      +|-+.|.+++++...+.+.+|..+++| +|+++.++++.+..+.++...+..       .++..+....++|..|++|+ 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~-------~Gl~~a~~~~is~~~~~~~~-   73 (488)
T TIGR02900         2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTT-------GGLPVAISKFVAEASAKNDR-   73 (488)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHh-------CCcHHHHHHHHHHHHhccch-
Confidence            366899999999999999999999999 799999999999888777654332       23444556688887777666 


Q ss_pred             cccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 039534          185 IDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGA  264 (380)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~  264 (380)
                               +++++.+..++.+.+..+++++++++.+++++...++++++      ...+++++++..|+..+....+.+
T Consensus        74 ---------~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~  138 (488)
T TIGR02900        74 ---------KNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDER------SLYSLLVICPAMPFIALSSVLKGY  138 (488)
T ss_pred             ---------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChh------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     88999999999999999999999899999999887764322      345788999999999999999999


Q ss_pred             HhccCCchHHHHHHHHHHHHHHHHHHHHHHh-----hcCChhHHHHHHHHHHHHHHHHHHHHHhccccc-cC------CC
Q 039534          265 FRGFMDTKTPLYAIGAGNLINAILDPILIFF-----FHFGIGGAAIATVISEYLIAFILIWKLSDNVLL-MS------PD  332 (380)
Q Consensus       265 l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~-----~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~-~~------~~  332 (380)
                      +|+.+|.+..++.++++.++|+.++..++..     ..+|+.|+++++.+++++..++.+++.+|+++. .+      .+
T Consensus       139 l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (488)
T TIGR02900       139 FQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKS  218 (488)
T ss_pred             HhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCc
Confidence            9999999999999999999998877666542     246788999999999999998877665443221 11      12


Q ss_pred             CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Q 039534          333 IDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAR  368 (380)
Q Consensus       333 ~~~~~~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~  368 (380)
                      .+++.+++.++.+.|..++.+.......+-+.+.++
T Consensus       219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~  254 (488)
T TIGR02900       219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQ  254 (488)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            335678999999999999999988887766655544

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PRK15099 O-antigen translocase; Provisional

Probab=99.74  E-value=1.9e-15  Score=148.83  Aligned_cols=242  Identities=15%  Similarity=0.081  Sum_probs=186.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhc-cChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCCCCcc
Q 039534          106 WSIALPAALALAADPIASLIDTAFVGH-LGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQ  184 (380)
Q Consensus       106 l~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~~~~~  184 (380)
                      +|-+.-.....+...+.+.+-...+.+ +|+++.+.++....+..+...+..++       +..+....++|+  ++   
T Consensus         4 ~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G-------~~~a~~~~ia~~--~~---   71 (416)
T PRK15099          4 AKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAG-------IFNGVTKYVAQY--HD---   71 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCC-------ccceeeeeHHhc--CC---
Confidence            444555566677777777777777777 89999988888887777665433332       222223345553  22   


Q ss_pred             cccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 039534          185 IDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGA  264 (380)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~  264 (380)
                             |+++.++.+..++.+.+..++.++++++.+.+++...++.++|      -..++.+..+..++..+.....++
T Consensus        72 -------~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  138 (416)
T PRK15099         72 -------QPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD------YQGVVRAVALIQMGIAWANLLLAI  138 (416)
T ss_pred             -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   5588899999999999999999999999999999998874322      346677777777788889999999


Q ss_pred             HhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcccc----ccCCCCChHHHHH
Q 039534          265 FRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVL----LMSPDIDGRRVVH  340 (380)
Q Consensus       265 l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~  340 (380)
                      +|+.||++.++..++++.++|+.+ +++++. ..|+.|+++|+.+++.+..+..+++++|+++    +.+++++++.+++
T Consensus       139 lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~  216 (416)
T PRK15099        139 LKGFRDAAGNALSLIVGSLIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWDNGLAGQ  216 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCCHHHHHH
Confidence            999999999999999999999887 444443 2499999999999999988877766654432    1245667888999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHH-ccCchhh
Q 039534          341 YLKSGGLLIGRTIAVLLTMTLATSMAA-REGPIPW  374 (380)
Q Consensus       341 ~l~~~~p~~~~~l~~~~~~~~~~~~~~-~lG~~~~  374 (380)
                      .++.|.|...+++..++...+.+.+++ .+|+++.
T Consensus       217 ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~v  251 (416)
T PRK15099        217 LGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEV  251 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHh
Confidence            999999999999999999999998885 8887763

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.74  E-value=4.2e-15  Score=146.75  Aligned_cols=232  Identities=18%  Similarity=0.167  Sum_probs=193.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCC
Q 039534          100 ELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSD  179 (380)
Q Consensus       100 ~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g  179 (380)
                      +..|++.+...|.++......+...+|+.+.+.+.+...+.+..+.+++++...++       ..++.+.+.|..++...
T Consensus       229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGif-------gvai~tvllP~lSr~~~  301 (518)
T COG0728         229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIF-------GVALSTVLLPSLSRHAA  301 (518)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHhh
Confidence            56799999999999999999999999999999999889999999999988876444       45566667888888766


Q ss_pred             CCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCC--CCcccHHHHHHHHHHHHHhHHHHHH
Q 039534          180 DGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIP--ADSPMRVPAENFLNLRAFGAPPIVI  257 (380)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~a~~~l~~~~~~~~~~~l  257 (380)
                      ++|.          ++.++..++++++++++.+|+++++..+++|+...+++.  -+++-.......++.++++.+++.+
T Consensus       302 ~~~~----------~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L  371 (518)
T COG0728         302 NGDW----------PEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFAL  371 (518)
T ss_pred             cCCh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHH
Confidence            6655          899999999999999999999999999999999998642  2344567788899999999999999


Q ss_pred             HHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhccccccCCCCChHH
Q 039534          258 ALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRR  337 (380)
Q Consensus       258 ~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~~~~~~~~~~  337 (380)
                      ..++...+.+.+|+|.|+++.+++.++|+.+|..++..  +|..|.++|+.++.++++.++++.++|+..... ...|..
T Consensus       372 ~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~-~~~~~~  448 (518)
T COG0728         372 VKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRLVYLP-GRGWGL  448 (518)
T ss_pred             HHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cchhhH
Confidence            99999999999999999999999999999999777664  888999999999999999999888877765443 333333


Q ss_pred             HHHHHHhhHHHHHHH
Q 039534          338 VVHYLKSGGLLIGRT  352 (380)
Q Consensus       338 ~~~~l~~~~p~~~~~  352 (380)
                      .. ..|..+-.+++.
T Consensus       449 ~~-~~k~~l~~~i~~  462 (518)
T COG0728         449 FL-ILKLLLASAIMA  462 (518)
T ss_pred             HH-HHHHHHHHHHHH
Confidence            33 344433333333

>PRK15099 O-antigen translocase; Provisional

Probab=99.68  E-value=1.8e-14  Score=141.97  Aligned_cols=200  Identities=14%  Similarity=0.011  Sum_probs=170.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhc
Q 039534           98 FDELGLEIWSIALPAALALAADPIASLIDTAFVG-HLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQ  176 (380)
Q Consensus        98 ~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig-~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~  176 (380)
                      +++.+|+++++++|..++++..++.+.+|+.+++ ++|.+++++++.+.++.+...       .....++..+.+|.+++
T Consensus       210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~-------~~~~~~~~~a~~P~~s~  282 (416)
T PRK15099        210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYL-------QFITASFSVYLLPTLSR  282 (416)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence            4567899999999999999999999999999997 699999999999999977542       23355666677889888


Q ss_pred             cCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHH
Q 039534          177 GSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIV  256 (380)
Q Consensus       177 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~  256 (380)
                      .   +|+          ++.++.+++.....+.++++++++++++++++..++..+    -+..+.+++++++++.++..
T Consensus       283 ~---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~----~~~~~~~~~~~l~~~~~l~~  345 (416)
T PRK15099        283 L---TEK----------RDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSN----KFTAMRDLFAWQLVGDVLKV  345 (416)
T ss_pred             c---CCh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHHH
Confidence            3   333          778888999999999999999999999999999999853    24558889999999999988


Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHh
Q 039534          257 IALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLS  323 (380)
Q Consensus       257 l~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~  323 (380)
                      .+..+...+-..++++..+...+...++++++++++++.  +|..|+++++.+++.+..++..+...
T Consensus       346 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~  410 (416)
T PRK15099        346 GAYVFGYLVIAKASLRFYILAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFL  410 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888877777788889989999999999999999999875  89999999999999999987765543

>PRK10459 colanic acid exporter; Provisional

Probab=99.67  E-value=6.4e-14  Score=140.97  Aligned_cols=202  Identities=12%  Similarity=-0.007  Sum_probs=169.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhcc
Q 039534           99 DELGLEIWSIALPAALALAADPIASLIDTAFVGH-LGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQG  177 (380)
Q Consensus        99 ~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~  177 (380)
                      ++..|++++++.|.+.+++...+.+.+|+.++|+ +|.++++.++.+.++.++...       .....+.....|..++.
T Consensus       203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~-------~i~~~i~~v~~P~~s~~  275 (492)
T PRK10459        203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPM-------KINPIITRVAFPVFAKI  275 (492)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHh
Confidence            4567999999999999999999999999999999 788899999999888766532       22333444456666662


Q ss_pred             CCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHH
Q 039534          178 SDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVI  257 (380)
Q Consensus       178 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l  257 (380)
                        ++          |+++.++.+++...+...+++|+++++..+++++..+++++    -+..+...++++++...+..+
T Consensus       276 --~~----------~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~----~~~~a~~~l~il~~~~~~~~~  339 (492)
T PRK10459        276 --QD----------DTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGE----KWNSAIPILQLLCIVGLLRSV  339 (492)
T ss_pred             --cC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCh----hHHhHHHHHHHHHHHHHHHHH
Confidence              22          45888999999999999999999999999999999988752    267789999999999999999


Q ss_pred             HHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcc
Q 039534          258 ALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDN  325 (380)
Q Consensus       258 ~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~  325 (380)
                      ......++++.||+|.+++.+++..+++++..+++..  .+|+.|+++|+.+++.+..++..++.+|+
T Consensus       340 ~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~~  405 (492)
T PRK10459        340 GNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIKP  405 (492)
T ss_pred             HHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998888886666654  48999999999999999988888877553

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=99.66  E-value=4.3e-14  Score=141.67  Aligned_cols=187  Identities=24%  Similarity=0.239  Sum_probs=166.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhcc
Q 039534           99 DELGLEIWSIALPAALALAADPIASLIDTAFVGH-LGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQG  177 (380)
Q Consensus        99 ~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~  177 (380)
                      ++.+|++++.++|..+.++...+.+.+|+.++++ +|.++++.++.+..+....        ..+.+++...+.|..++.
T Consensus       209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~--------~~~~~~l~~~l~P~~s~~  280 (480)
T COG2244         209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL--------LIVASALNRVLFPALSRA  280 (480)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence            5788999999999999999999999999999999 7888899888776666655        455677778888999997


Q ss_pred             CCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHH
Q 039534          178 SDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVI  257 (380)
Q Consensus       178 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l  257 (380)
                      +.+++.          ++.++...+.+.+...+++|..+++..+++++..++++++.    ..+...+++++++.++..+
T Consensus       281 ~~~~~~----------~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~----~~~~~~l~il~~~~~~~~~  346 (480)
T COG2244         281 YAEGDR----------KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY----ASAAPILQLLALAGLFLSL  346 (480)
T ss_pred             HHcCcH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc----cchhHHHHHHHHHHHHHHH
Confidence            766655          88889999999999999999999999999999999986432    3388999999999999999


Q ss_pred             HHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 039534          258 ALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVIS  310 (380)
Q Consensus       258 ~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is  310 (380)
                      .......+++.|+++..++.+.++.++|++++++++..  +|+.|++.++ .+
T Consensus       347 ~~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~  396 (480)
T COG2244         347 VSLTSSLLQALGKQRLLLLISLISALLNLILNLLLIPR--FGLIGAAIAT-AS  396 (480)
T ss_pred             HHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence            99999999999999999999999999999999999875  8999999999 44

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.45  E-value=9.4e-11  Score=116.57  Aligned_cols=224  Identities=16%  Similarity=0.078  Sum_probs=181.2

Q ss_pred             cChh-hHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHH
Q 039534          133 LGSV-ELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIG  211 (380)
Q Consensus       133 lg~~-~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (380)
                      +|.. +.+|+.++.++.++...++.      ..++.+...|...+.. ++          |+++.++..+..+.+...+.
T Consensus         5 fG~s~~~Daf~~A~~ip~~l~~l~~------~gal~~~~IP~~~~~~-~~----------~~~~~~~f~~~~~~~~~~~~   67 (451)
T PF03023_consen    5 FGASAEADAFFVAFTIPNFLRSLLA------GGALSAAFIPVFSKAR-EK----------GEEEARRFISTLLTILLIIS   67 (451)
T ss_pred             hcCCchhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHh-cc----------CHHHHHHHHHHHHHHHHHHH
Confidence            6765 57789999998888754432      1234455567777743 23          45888888888888888899


Q ss_pred             HHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHH
Q 039534          212 IAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPI  291 (380)
Q Consensus       212 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~  291 (380)
                      +.++++.+++++++..++....|++..+.+.+++++++|..++..+..++.+++|+.+|...+....++.++.-++  .+
T Consensus        68 ~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~--~~  145 (451)
T PF03023_consen   68 LLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIIL--SL  145 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHH--HH
Confidence            9999999999999999997666788999999999999999999999999999999999999999988888776555  33


Q ss_pred             HHHhhcCC---hhHHHHHHHHHHHHHHHHHHHHHhccccccCC--CCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 039534          292 LIFFFHFG---IGGAAIATVISEYLIAFILIWKLSDNVLLMSP--DIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMA  366 (380)
Q Consensus       292 li~~~~~G---i~Gaa~a~~is~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~p~~~~~l~~~~~~~~~~~~~  366 (380)
                      ++.....|   +.+.++|..++..+..++.+.+.+|.....++  +++.++.+++++...|..+..........+-..++
T Consensus       146 ~~~~~~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~la  225 (451)
T PF03023_consen  146 LLLSNSWGQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRDPNLKRFLKLAIPLLLSSSISQINILVDRALA  225 (451)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344577   89999999999999999998888876654444  44556789999999999999999998888888899


Q ss_pred             HccCchhhh
Q 039534          367 AREGPIPWL  375 (380)
Q Consensus       367 ~~lG~~~~~  375 (380)
                      +.+++-..+
T Consensus       226 S~l~~G~vs  234 (451)
T PF03023_consen  226 SFLGEGSVS  234 (451)
T ss_pred             hCCCccHHH
Confidence            888876633

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.23  E-value=2.3e-08  Score=99.28  Aligned_cols=254  Identities=14%  Similarity=0.055  Sum_probs=190.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cChh-hHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCC
Q 039534          103 LEIWSIALPAALALAADPIASLIDTAFVGH-LGSV-ELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDD  180 (380)
Q Consensus       103 k~il~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~-~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~  180 (380)
                      +.++|-++-.....++.-+.+.+-..++.. +|.. ..+|+.++.++.|...-++.-|      +++++..|.-.+...+
T Consensus         7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaeg------afs~aFVPv~~~~~~~   80 (518)
T COG0728           7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEG------AFSSAFVPVLAEAKKK   80 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhch------hHhhhhhHHHHHHHHc
Confidence            566677777777778888888886666655 8985 5679999999999998776543      2444445666663322


Q ss_pred             CCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCC-CcccHHHHHHHHHHHHHhHHHHHHHH
Q 039534          181 GSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPA-DSPMRVPAENFLNLRAFGAPPIVIAL  259 (380)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~a~~~l~~~~~~~~~~~l~~  259 (380)
                      +          ++++.++.......+...+.+..+++..++.+++.+.+..+. |++....+....+++.|..++..+..
T Consensus        81 ~----------~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~a  150 (518)
T COG0728          81 E----------GEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSA  150 (518)
T ss_pred             c----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            2          225555555555556777777778878889999996665443 33333368888999999999999999


Q ss_pred             HHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--ChHH
Q 039534          260 AAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDI--DGRR  337 (380)
Q Consensus       260 ~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~~~~~~--~~~~  337 (380)
                      ...++||..++...+.+.-+.-++.-|....++......-..+.+||+.++-++..++.+..++|.....++++  +.++
T Consensus       151 l~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~~~  230 (518)
T COG0728         151 LFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKDPG  230 (518)
T ss_pred             HHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCchh
Confidence            99999999999999999888777766644454444322236788999999999999999999988765555444  4468


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHccCch
Q 039534          338 VVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPI  372 (380)
Q Consensus       338 ~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~lG~~  372 (380)
                      .+++++.-.|..+......+...+-+.+++.+.+-
T Consensus       231 lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~G  265 (518)
T COG0728         231 LKRFLKLMLPALLGVSISQINLLIDTAIASFLAEG  265 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999888899888443

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.21  E-value=2.3e-10  Score=109.47  Aligned_cols=212  Identities=15%  Similarity=0.078  Sum_probs=146.3

Q ss_pred             hhhhccCCCcccccCCccccCCCCCcccccccccccccccc-cCCCCCCCCCCCccCCCCCCCCcccccCch---hhhhH
Q 039534           13 LCSMHSSSSSYYYNSKQTKSSSTPGKFRIFNRRNLTCSARL-KSAPHKKKTASTSLQTSPPDPSRFSLSGSF---SLINI   88 (380)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~   88 (380)
                      +.+++.|.+++..+.++.+.+...+..+........+.+.. ..+ . .  .......+...+.........   .++..
T Consensus       124 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g-~-~--g~~g~~~~~~~~~~~~~~~~~~~~~~~~~  199 (342)
T TIGR00797       124 AYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFG-F-L--GIVGAALATVISYWLMFLLLLYYIKKAKK  199 (342)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhHHHHhcCcc-c-c--ccHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            44567777888888899999988888776655543322211 100 0 0  000000000000000000000   00000


Q ss_pred             HH-H-hhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 039534           89 IA-R-LSDGFKFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSF  166 (380)
Q Consensus        89 ~~-~-~~~~~~~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l  166 (380)
                      .+ + .+....+++..|+++++++|.+++++...+...+|+.+++++|++++++++++.++.++.        .....++
T Consensus       200 ~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~--------~~~~~~~  271 (342)
T TIGR00797       200 IGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLL--------FMPAFGF  271 (342)
T ss_pred             cccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence            00 0 001123456789999999999999999999999999999999999999999998887765        2334556


Q ss_pred             hhhhHHHhhccCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHH
Q 039534          167 VAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLN  246 (380)
Q Consensus       167 ~~~~~~~va~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~  246 (380)
                      ..+.+|..++++|++|.          +++++..++++...+.++++.+++++++++++.+++.+  |+++.+.+..+++
T Consensus       272 ~~a~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~--~~~~~~~~~~~~~  339 (342)
T TIGR00797       272 GIAVSILVGQALGAGDP----------KRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTN--DPEVLELAAIYLI  339 (342)
T ss_pred             HHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence            67778899999888877          99999999999999999999999999999999999984  5778899988887


Q ss_pred             HH
Q 039534          247 LR  248 (380)
Q Consensus       247 ~~  248 (380)
                      +.
T Consensus       340 ~~  341 (342)
T TIGR00797       340 FV  341 (342)
T ss_pred             Hh
Confidence            64

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PRK10459 colanic acid exporter; Provisional

Probab=99.06  E-value=1.3e-07  Score=95.27  Aligned_cols=235  Identities=12%  Similarity=0.079  Sum_probs=166.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCCC
Q 039534          103 LEIWSIALPAALALAADPIASLIDTAFVGH-LGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDG  181 (380)
Q Consensus       103 k~il~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~~  181 (380)
                      ++..+-+.-..+.++...+.+.+....+.+ +|+++.+.++.+..+.++...+..+|+..          +.+.+    +
T Consensus         5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~----------aii~~----~   70 (492)
T PRK10459          5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGA----------SIIQR----Q   70 (492)
T ss_pred             HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHH----------HHHhc----c
Confidence            455666677788888888889998888888 89999999999998888776554443211          12221    1


Q ss_pred             CcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHHH
Q 039534          182 SSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAA  261 (380)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~  261 (380)
                      +.        ++    +.......+.+..++.++++.+.+++++..+++.   |+    ....+++.++..++..+....
T Consensus        71 ~~--------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~  131 (492)
T PRK10459         71 DI--------SH----LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHN---PE----LAPLIKTLSLAFVIIPIGQQF  131 (492)
T ss_pred             cC--------CH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---hh----hHHHHHHHHHHHHHHHHhhHH
Confidence            11        11    2344556666777777777777788887766542   22    445788888888888888899


Q ss_pred             HHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhccccccCCCCChHHHHHH
Q 039534          262 QGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHY  341 (380)
Q Consensus       262 ~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  341 (380)
                      ..++|+..+.+......++..++...+...+.. .++|+.+..++..++..+..++..+..++ +...+++++++.+++.
T Consensus       132 ~~~l~r~~~f~~~a~~~~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~k~l  209 (492)
T PRK10459        132 RALLQKELEFNKLAKIEISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IYRPALHFSLASVKPN  209 (492)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccceecHHHHHHH
Confidence            999999999999888888888777776655544 36899999999999998877655433333 2223334567788999


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHcc-Cch
Q 039534          342 LKSGGLLIGRTIAVLLTMTLATSMAARE-GPI  372 (380)
Q Consensus       342 l~~~~p~~~~~l~~~~~~~~~~~~~~~l-G~~  372 (380)
                      ++.+.|.....+...+...+-..+.+++ |+.
T Consensus       210 l~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~  241 (492)
T PRK10459        210 LSFGAWQTAERIINYLNTNIDTILIGRILGAE  241 (492)
T ss_pred             HhhhHHHHHHHHHHHHHhcCchhhhhHhhchH
Confidence            9999999998888777666555554443 443

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=99.05  E-value=3.4e-07  Score=83.98  Aligned_cols=234  Identities=15%  Similarity=0.095  Sum_probs=153.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhc-cChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCCCCccc
Q 039534          107 SIALPAALALAADPIASLIDTAFVGH-LGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQI  185 (380)
Q Consensus       107 ~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~~~~~~  185 (380)
                      |-+.-....++...+.+.+-..++.+ +|.++.+.+++...+.++...+..+|       +.....-..++    .+.  
T Consensus         3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G-------~~~~~~r~~~~----~~~--   69 (273)
T PF01943_consen    3 KNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLG-------LSQAIVRFIAE----YKD--   69 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHH----hhh--
Confidence            44455677788888888888888888 89999999999988888775443333       22212223333    111  


Q ss_pred             ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039534          186 DHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAF  265 (380)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~l  265 (380)
                            |+++.+..........+..++.+..     ...+...++.+ +     ....+........++.........++
T Consensus        70 ------~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (273)
T PF01943_consen   70 ------KKELRSAYFSSVLFLLLIFSLIFLL-----ILLIASFFGNP-S-----LSLILIILALLILILSSLSSVFSGLL  132 (273)
T ss_pred             ------hHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHcCCc-h-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  1133333444343333333333222     22222244422 2     22333333333335788888999999


Q ss_pred             hccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhccccccCCCCChHHHHHHHHhh
Q 039534          266 RGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHYLKSG  345 (380)
Q Consensus       266 ~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  345 (380)
                      ++.++.+...+.+++..++.+++..+++.. ..++.+..++..+++.+..++..++.+|+.+..+...+++..++.++.+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (273)
T PF01943_consen  133 QGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLRPRFSFFSKKFFKEILRFG  211 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHH
Confidence            999999999999999988888766666654 3448899999999999998888888876554333344578899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCc
Q 039534          346 GLLIGRTIAVLLTMTLATSMAAREGP  371 (380)
Q Consensus       346 ~p~~~~~l~~~~~~~~~~~~~~~lG~  371 (380)
                      .|.....+........-..+.+.+-+
T Consensus       212 ~~~~~~~~~~~~~~~~d~~ii~~~~g  237 (273)
T PF01943_consen  212 LPLFLSSLLSWLYSQIDRLIIGYFLG  237 (273)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhCC
Confidence            99999999888888777766666633

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=98.84  E-value=7.4e-08  Score=80.46  Aligned_cols=81  Identities=31%  Similarity=0.406  Sum_probs=75.8

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhc
Q 039534          245 LNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSD  324 (380)
Q Consensus       245 l~~~~~~~~~~~l~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~  324 (380)
                      +++++++.++..+......++++.||++..++.++++.++|+++++++++  ++|..|+++|+.+++.+..++..++.+|
T Consensus         2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k   79 (146)
T PF14667_consen    2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK   79 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999976  4999999999999999999999998887


Q ss_pred             ccc
Q 039534          325 NVL  327 (380)
Q Consensus       325 ~~~  327 (380)
                      +.+
T Consensus        80 ~~~   82 (146)
T PF14667_consen   80 KIG   82 (146)
T ss_pred             HhC
Confidence            654

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=98.78  E-value=1.2e-05  Score=73.05  Aligned_cols=215  Identities=13%  Similarity=0.123  Sum_probs=139.9

Q ss_pred             HHHHHHHhhhc-cChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCCCCcccccchhhhhhhhhHHH
Q 039534          122 ASLIDTAFVGH-LGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSI  200 (380)
Q Consensus       122 ~~~id~~~ig~-lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~~~~~~~~~~~~~~~~~~~~~  200 (380)
                      .+.+-..++.| +|.++.+.++....+..+...+..+|       +    .....+. .++          |+++.++..
T Consensus         3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g-------~----~~~~~~~-~~~----------~~~~~~~~~   60 (251)
T PF13440_consen    3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLG-------L----RQSLVRS-AAR----------DKQDIRSLL   60 (251)
T ss_pred             HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHH-------H----HHHHHHh-hcc----------CHHHHHHHH
Confidence            45666777778 89999999998888877765443322       1    1122221 112          335566666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCchHHHHHHHH
Q 039534          201 STSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGA  280 (380)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~l~g~g~~~~~~~~~i~  280 (380)
                      ..........++...++    ...+..+++   +    .....++...++..++..+.....+++++.+|.+......++
T Consensus        61 ~~~~~~~~~~~~~~~~~----~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  129 (251)
T PF13440_consen   61 RFSLLVSLLLAVILAIL----AILIAYFFG---D----PELFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIV  129 (251)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHhC---C----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            66555544444443332    222223333   2    124556777778889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhccccccCCCCChHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039534          281 GNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHYLKSGGLLIGRTIAVLLTMT  360 (380)
Q Consensus       281 ~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~l~~~~~~~  360 (380)
                      ..++.+.+..++... +.+..+..++..++..+..+....+.+++.   +.+.+.+. .+..+.+.|.....+..+....
T Consensus       130 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  204 (251)
T PF13440_consen  130 RSLLRLLLLVLLLYL-GLNLWSILLAFIISALLALLISFYLLRRKL---RLSFKFSW-RRLLKYGLPFSLSSLLSWLLSQ  204 (251)
T ss_pred             HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHhcccc---CCCchhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            888875544444433 348889999999998887766655443222   22222223 3478999999999988888887


Q ss_pred             HHHHHHHc-cCchhh
Q 039534          361 LATSMAAR-EGPIPW  374 (380)
Q Consensus       361 ~~~~~~~~-lG~~~~  374 (380)
                      .-..+++. +|+++.
T Consensus       205 ~~~~li~~~l~~~~~  219 (251)
T PF13440_consen  205 IDRLLIGYFLGPEAV  219 (251)
T ss_pred             HHHHHHHHHcCHHHH
Confidence            77777777 766653

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=98.66  E-value=2.8e-08  Score=98.78  Aligned_cols=204  Identities=19%  Similarity=0.157  Sum_probs=168.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCh--hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhc
Q 039534           99 DELGLEIWSIALPAALALAADPIASLIDTAFVGHLGS--VELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQ  176 (380)
Q Consensus        99 ~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~--~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~  176 (380)
                      .+.+++++++++|..++-.+++....+-....|.++.  .++++.++.........        +...++..+..+.+++
T Consensus       243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~--------~~~~~~~~a~strv~n  314 (473)
T KOG1347|consen  243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHL--------MIPGAFSAAVSTRVSN  314 (473)
T ss_pred             hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH--------HHhhhhhhhHHHHHHH
Confidence            4567899999999999999999999999999999986  46777777666655542        2233566666779999


Q ss_pred             cCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHH
Q 039534          177 GSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIV  256 (380)
Q Consensus       177 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~  256 (380)
                      .+|+++.          ++.+.....++...+.++...+..++...+.+..+|.  +|+|+.+...+...+++....+..
T Consensus       315 eLGag~p----------~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift--~~~ev~~~va~~~pll~~~~~~~~  382 (473)
T KOG1347|consen  315 ELGAGKP----------KRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFT--NSKEVLDLVADLTPLLALSILLNA  382 (473)
T ss_pred             HHcCCCh----------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999988          8888888889888899999999999999999999998  467899999999999999999999


Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHHH-HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 039534          257 IALAAQGAFRGFMDTKTPLYAIGAGN-LINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKL  322 (380)
Q Consensus       257 l~~~~~~~l~g~g~~~~~~~~~i~~~-~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~  322 (380)
                      ...++++..+|.|.++...++++.+. ++.+++..++-+..++|..|.+++...+..+......+..
T Consensus       383 ~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~  449 (473)
T KOG1347|consen  383 LQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVT  449 (473)
T ss_pred             chhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHhe
Confidence            99999999999999999999988765 5556655655555689999999999998555555544443

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=98.47  E-value=0.00039  Score=64.21  Aligned_cols=244  Identities=14%  Similarity=0.040  Sum_probs=142.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCh---hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhc
Q 039534          100 ELGLEIWSIALPAALALAADPIASLIDTAFVGHLGS---VELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQ  176 (380)
Q Consensus       100 ~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~---~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~  176 (380)
                      ..+++++++-+|+.++.+...+...+-+.-+.+-.+   +.+|+++++..+.-...        +....+-.....++.+
T Consensus         8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~--------sp~~~~~~igl~~V~s   79 (345)
T PF07260_consen    8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFA--------SPLSMFHHIGLVFVNS   79 (345)
T ss_pred             chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh--------ChhhhhHHHHHHHhcc
Confidence            446899999999999999999988888887776332   34889998887765542        2222222222223322


Q ss_pred             cCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HH----HcHHHHHHhcCCCCCcccHHHHHHHHHHHHHh
Q 039534          177 GSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALA-LS----FGSGFLMNIMGIPADSPMRVPAENFLNLRAFG  251 (380)
Q Consensus       177 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~  251 (380)
                           ++          +  ++.   .+......+...+.+ ..    -++..++.-+.+ -++++.+.++..+.++.+.
T Consensus        80 -----~r----------s--rr~---~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhg-Vs~~va~~tr~a~l~L~ll  138 (345)
T PF07260_consen   80 -----KR----------S--RRK---AVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHG-VSPSVAEKTRRAFLYLTLL  138 (345)
T ss_pred             -----hh----------h--hHH---HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhC-CCHHHHHHHHHHHHHHHHH
Confidence                 11          1  111   111112233333222 12    233444443332 4577999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhh-------cCChhHHHHHHHHHHHHHHHHHHH-HHh
Q 039534          252 APPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFF-------HFGIGGAAIATVISEYLIAFILIW-KLS  323 (380)
Q Consensus       252 ~~~~~l~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~-------~~Gi~Gaa~a~~is~~~~~~l~~~-~~~  323 (380)
                      ..+.++.....+++-=.+++......++...+.-+++...++...       -.|+.|...+..+ +.-...+.+| .++
T Consensus       139 Pfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~v-r~t~v~LGy~~~i~  217 (345)
T PF07260_consen  139 PFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAV-RFTIVCLGYYQSIH  217 (345)
T ss_pred             HHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence            999999999999888555555555545444444444334444211       1233333322222 1111122222 222


Q ss_pred             ccccccCC--CCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc-cCchh
Q 039534          324 DNVLLMSP--DIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAR-EGPIP  373 (380)
Q Consensus       324 ~~~~~~~~--~~~~~~~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~-lG~~~  373 (380)
                      .+......  +.+....++++++..|..........+--+++.+++| +|..+
T Consensus       218 ~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~  270 (345)
T PF07260_consen  218 DIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQ  270 (345)
T ss_pred             hhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence            22222211  2334468999999999999999999999999999999 55543

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=98.37  E-value=0.00017  Score=72.28  Aligned_cols=233  Identities=17%  Similarity=0.130  Sum_probs=146.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCCC
Q 039534          103 LEIWSIALPAALALAADPIASLIDTAFVGH-LGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDG  181 (380)
Q Consensus       103 k~il~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~~  181 (380)
                      +++.|-+.-....++...+.+.+-...+.+ +|+++.+.++.+..+.++...+..+|       +.....-.++++..++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G-------~~~ai~r~ia~~~~~~   78 (480)
T COG2244           6 KKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFG-------LPAAITREIAEYREKG   78 (480)
T ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcC-------CcHHHHHHHHHhhccc
Confidence            667788888888899999999998888888 89999999999888888876544333       2222222444422111


Q ss_pred             CcccccchhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHH
Q 039534          182 SSQIDHGVEQQGKKLLPS-ISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALA  260 (380)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~  260 (380)
                      ++          ...... ....+......+++.....+...+.         +    ......+++..+..++......
T Consensus        79 ~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~~~~~~~  135 (480)
T COG2244          79 EY----------LLLILLSVLLLLLLALILLLLLLLIAYLLAPI---------D----PVLALLLRILSLALLLLPLSSV  135 (480)
T ss_pred             HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------C----hhhHHHHHHHHHHHHHHHHHHH
Confidence            11          222222 2223323333222222222111111         1    1255667888999999999999


Q ss_pred             HHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHh-ccccccCCCCC--hHH
Q 039534          261 AQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLS-DNVLLMSPDID--GRR  337 (380)
Q Consensus       261 ~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~-~~~~~~~~~~~--~~~  337 (380)
                      ..+++|+.++.+......+.. ..-+.....+..   ....++.|+..++......+..++.. ++++..+..++  ++.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (480)
T COG2244         136 LRGLFQGFGRFGPLALSIVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRFSLAL  211 (480)
T ss_pred             HHHHHHHHhhcccchhHHHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHH
Confidence            999999999999999985444 111111122211   34566777777777776666655553 23323333344  678


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcc
Q 039534          338 VVHYLKSGGLLIGRTIAVLLTMTLATSMAARE  369 (380)
Q Consensus       338 ~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~l  369 (380)
                      +++.++.+.|.....+.......+=..+.+..
T Consensus       212 ~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~  243 (480)
T COG2244         212 LKELLRFGLPLLLSSLLNFLFTNIDTLLLGLF  243 (480)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888877777655544

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=98.09  E-value=0.0003  Score=71.34  Aligned_cols=215  Identities=13%  Similarity=0.028  Sum_probs=160.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cC-hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccC
Q 039534          102 GLEIWSIALPAALALAADPIASLIDTAFVGH--LG-SVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGS  178 (380)
Q Consensus       102 ~k~il~~a~P~~~~~l~~~l~~~id~~~ig~--lg-~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~  178 (380)
                      -+++++++...+.+.+.-.+.+--|++.+..  +. .++-+.|++..++-.++.=++.-|+=       -..-..-++..
T Consensus       252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiE-------Es~~~~Fsk~l  324 (549)
T PF04506_consen  252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIE-------ESSRLYFSKLL  324 (549)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHH-------HHHHHHHHHHh
Confidence            4889999999999999999999999999999  44 45788899988888887655554522       12233444443


Q ss_pred             CCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHH
Q 039534          179 DDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIA  258 (380)
Q Consensus       179 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~  258 (380)
                      ..++.- +.-.+++.++..+.+...+++...+++.+..+....++.++.+++++.=  ....+...+++.+.-+|++++|
T Consensus       325 ~~~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w--~~~~~~~~l~~yc~yi~~la~N  401 (549)
T PF04506_consen  325 SRDNSK-KKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRW--SSTSAPSLLRAYCYYIPFLAIN  401 (549)
T ss_pred             cccCch-hhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcc--cCCCchHHHHHHHHHHHHHHHc
Confidence            333220 0001224466777888888888899988888888888889998864311  2233688899999999999999


Q ss_pred             HHHHHHHhccCCchHHHHHH---HHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 039534          259 LAAQGAFRGFMDTKTPLYAI---GAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVL  327 (380)
Q Consensus       259 ~~~~~~l~g~g~~~~~~~~~---i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~  327 (380)
                      -++-+++++..+.+.....+   ++..++.+..+++|+.. ++|..|-.+|..+...+..+...+++++..+
T Consensus       402 Gi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~~  472 (549)
T PF04506_consen  402 GITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRYFR  472 (549)
T ss_pred             cHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999998876655543   34446667778888876 7999999999999999999888888866543

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.05  E-value=0.00051  Score=66.20  Aligned_cols=223  Identities=13%  Similarity=0.054  Sum_probs=155.9

Q ss_pred             hHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cChhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 039534           87 NIIARLSDGFKFDELGLEIWSIALPAALALAADPIASLIDTAFVGH---LGSVELAAVGVSVSVFNLVSKLFNVPLLNIT  163 (380)
Q Consensus        87 ~~~~~~~~~~~~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~---lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~  163 (380)
                      +.+++..+.......-++..++..-.+.+.++-.+.+-=|.+++..   ..-.+-|.+.+..++-.++.-++.-|     
T Consensus       223 dllpk~~~n~~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~P-----  297 (530)
T KOG2864|consen  223 DLLPKVSENERGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRP-----  297 (530)
T ss_pred             hhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhCh-----
Confidence            3344433333333445788888889999999999999999999986   23234444555544444444333333     


Q ss_pred             hhhhhhhHHHhhccCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHH
Q 039534          164 TSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAEN  243 (380)
Q Consensus       164 ~~l~~~~~~~va~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~  243 (380)
                        +=-......+|....++.       +|.++..+.+...+.+...+|+.++.+....+++++.+.++++=  ....+..
T Consensus       298 --IEEss~~~FA~~ls~~~q-------e~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kw--ss~~~~~  366 (530)
T KOG2864|consen  298 --IEESSYIYFARLLSRDNQ-------ENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKW--SSGGGSL  366 (530)
T ss_pred             --hHHHHHHHHHHHhhccch-------hhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccc--cCCCchH
Confidence              222223345554433332       47788888999999999999988888888889999998876422  2234668


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhccCCchHHHHH---HHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHH
Q 039534          244 FLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYA---IGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIW  320 (380)
Q Consensus       244 ~l~~~~~~~~~~~l~~~~~~~l~g~g~~~~~~~~---~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~  320 (380)
                      .+++.|.-+|+.++|.+.-++.++.++.+.....   .++..++.++++|+++..  +|..|--+|.++...+..+....
T Consensus       367 lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~  444 (530)
T KOG2864|consen  367 LLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLR  444 (530)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999998877655543   445567778899999876  67788888888888777777766


Q ss_pred             HHhcccc
Q 039534          321 KLSDNVL  327 (380)
Q Consensus       321 ~~~~~~~  327 (380)
                      ++++..+
T Consensus       445 fI~~~yr  451 (530)
T KOG2864|consen  445 FIRHYYR  451 (530)
T ss_pred             HHHHHhc
Confidence            6665443

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=96.66  E-value=0.011  Score=53.89  Aligned_cols=72  Identities=21%  Similarity=0.148  Sum_probs=60.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhc
Q 039534           98 FDELGLEIWSIALPAALALAADPIASLIDTAFVGH-LGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQ  176 (380)
Q Consensus        98 ~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~  176 (380)
                      +++..|++++.+.|..++.+...+...+|+.++++ .|.++++.++++.++.....        ....++.....|..++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~--------~~~~~~~~~~~P~~s~  271 (273)
T PF01943_consen  200 SKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAIS--------FLLSSISTVLFPRLSR  271 (273)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence            36788999999999999999999999999999999 78889999999999888773        3345555556677665


Q ss_pred             c
Q 039534          177 G  177 (380)
Q Consensus       177 ~  177 (380)
                      .
T Consensus       272 l  272 (273)
T PF01943_consen  272 L  272 (273)
T ss_pred             h
Confidence            3

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=94.33  E-value=0.35  Score=43.44  Aligned_cols=67  Identities=16%  Similarity=0.190  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhc
Q 039534          103 LEIWSIALPAALALAADPIASLIDTAFVGH-LGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQ  176 (380)
Q Consensus       103 k~il~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~  176 (380)
                      ++.++.+.|..+..+...+.+.+|.++++. +|.++++.++++.++.+....       ...+++.....|..+|
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~-------~~~~~i~~~~~p~lar  250 (251)
T PF13440_consen  183 RRLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPAS-------LLSSAISSVFFPKLAR  250 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhC
Confidence            348999999999999999999999999999 999999999999988876531       3344454444555544

>COG4267 Predicted membrane protein [Function unknown]

Probab=93.88  E-value=6.4  Score=37.83  Aligned_cols=122  Identities=16%  Similarity=0.160  Sum_probs=81.0

Q ss_pred             ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039534          186 DHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAF  265 (380)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~l  265 (380)
                      ++.-|+|.+++..-+.-...++...+..++..+          +..++|.   +..  |=...+.....+...-....++
T Consensus        90 D~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~v----------f~~~~~~---si~--yk~l~~~~FV~m~~~Wi~~iFl  154 (467)
T COG4267          90 DCLFEKKQRKILPSYIGVILLVTLVAGVIGLIV----------FFVNNQY---SIV--YKILACALFVGMSLVWILMIFL  154 (467)
T ss_pred             HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHh----------hhhcCch---hHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence            344455667777766666655555554444311          1111221   112  2222333445555556677889


Q ss_pred             hccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcc
Q 039534          266 RGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDN  325 (380)
Q Consensus       266 ~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~  325 (380)
                      .|..|-+...+.-.+|.++...+..++-.   .++.|..++..++..+..++...++.|.
T Consensus       155 S~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~  211 (467)
T COG4267         155 SGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRY  211 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            99999999999999999998888777654   6899999999999999998887777554

>COG4267 Predicted membrane protein [Function unknown]

Probab=87.33  E-value=29  Score=33.54  Aligned_cols=117  Identities=13%  Similarity=0.098  Sum_probs=76.5

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCC
Q 039534          191 QQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMD  270 (380)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~l~g~g~  270 (380)
                      ++++++...+++.+.-.+-+-..+++.....++.+..+++-      .+.--+..++-..+.........+-.+.--..+
T Consensus       317 ~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~l------S~~~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~  390 (467)
T COG4267         317 NNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGL------SEYYLDLFYVDVLGVSCQIVFMSLLNIFLYFDY  390 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46777888888888888878888888888999999999984      233444445555554444444444444444566


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHh-hcCChhHHHHHHHHHHHH
Q 039534          271 TKTPLYAIGAGNLINAILDPILIFF-FHFGIGGAAIATVISEYL  313 (380)
Q Consensus       271 ~~~~~~~~i~~~~i~i~l~~~li~~-~~~Gi~Gaa~a~~is~~~  313 (380)
                      -+..+.....-++.|-++.+++... +++--.|..+|..+.-.+
T Consensus       391 r~i~l~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv  434 (467)
T COG4267         391 RRIALELTALFLISNGILTFIFLELGPGYYGVGFFLASFLYVLV  434 (467)
T ss_pred             hhhhhhhhhHHHHHhHHHHHHHHHhCccceehHHHHHHHHHHHH
Confidence            6777777777778888888877642 344444555555444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	380
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	4e-22

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score = 96.2 bits (240), Expect = 4e-22
 Identities = 44/221 (19%), Positives = 84/221 (38%), Gaps = 25/221 (11%)

Query: 104 EIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNIT 163
            +  +A P  +A  A      +DT   G + ++++AAV ++ S++     LF V LL   
Sbjct: 13  NLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSI-LFGVGLLMAL 71

Query: 164 TSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSG 223
              VA  Q   +        ++  G               L LA  + +     L   + 
Sbjct: 72  VPVVA--QLNGAGRQHKIPFEVHQG---------------LILALLVSVPIIAVLFQ-TQ 113

Query: 224 FLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNL 283
           F++  M +     M      +++   F  P  ++  A +    G   TK  +     G L
Sbjct: 114 FIIRFMDVEEA--MATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLL 171

Query: 284 INAILDPILIF----FFHFGIGGAAIATVISEYLIAFILIW 320
           +N  L+ I ++        G  G  +AT I  +++  +L++
Sbjct: 172 LNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLF 212

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	380
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.94
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.88

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.94  E-value=8.5e-26  Score=222.75  Aligned_cols=256  Identities=17%  Similarity=0.262  Sum_probs=225.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccC
Q 039534           99 DELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGS  178 (380)
Q Consensus        99 ~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~  178 (380)
                      ++..|++++.++|.+++++...+++.+|+.+++++|++++++++++.++..+.        .....++..+..+.+++++
T Consensus         8 ~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~--------~~~~~g~~~~~~~~is~~~   79 (460)
T 3mkt_A            8 KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS--------ILFGVGLLMALVPVVAQLN   79 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH--------HHHHHHHHHHHGGGCTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence            35679999999999999999999999999999999999999999999986654        2334556667788999999


Q ss_pred             CCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHH
Q 039534          179 DDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIA  258 (380)
Q Consensus       179 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~  258 (380)
                      |++|+          ++.++.+++++.+.++++++++++ +.+.+++..+++.  |++..+.+..|+++++++.++..+.
T Consensus        80 g~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~  146 (460)
T 3mkt_A           80 GAGRQ----------HKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDV--EEAMATKTVGYMHAVIFAVPAYLLF  146 (460)
T ss_dssp             SSSST----------TTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSS--TTHHHHHHHHHHTTGGGHHHHHHHH
T ss_pred             cCCCh----------hHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98888          899999999999999999998875 7888999988874  5678899999999999999999999


Q ss_pred             HHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHh-h---cCChhHHHHHHHHHHHHHHHHHHHHHhccccccC----
Q 039534          259 LAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFF-F---HFGIGGAAIATVISEYLIAFILIWKLSDNVLLMS----  330 (380)
Q Consensus       259 ~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~-~---~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~~~----  330 (380)
                      ....+++|+.||++.+++.++++.++|+++++++++. +   ++|+.|+++|+.+++++..++.+++++++++..+    
T Consensus       147 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~  226 (460)
T 3mkt_A          147 QALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVF  226 (460)
T ss_dssp             HHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCS
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhh
Confidence            9999999999999999999999999999999999975 3   7999999999999999999998888876544221    


Q ss_pred             ---CCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHccCchhhh
Q 039534          331 ---PDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIPWL  375 (380)
Q Consensus       331 ---~~~~~~~~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~lG~~~~~  375 (380)
                         .+.+++.++++++.+.|...+.+.+...+.+.+.+++++|+++.+
T Consensus       227 ~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va  274 (460)
T 3mkt_A          227 ETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVA  274 (460)
T ss_dssp             CCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHH
T ss_pred             hcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHH
Confidence               245677789999999999999999999999999999999887743

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.88  E-value=2.4e-21  Score=190.82  Aligned_cols=291  Identities=14%  Similarity=0.036  Sum_probs=223.0

Q ss_pred             hhhhccCCCcccccCCccccCCCCCcccccccccccccccccCCCCCCCCCCCccCCCCCCCCcccccCchhhhhHHHHh
Q 039534           13 LCSMHSSSSSYYYNSKQTKSSSTPGKFRIFNRRNLTCSARLKSAPHKKKTASTSLQTSPPDPSRFSLSGSFSLINIIARL   92 (380)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (380)
                      +.++..+.+++..+.++++.|...+....+.+....+.+.....+.++. ...........+   ......-..-...+.
T Consensus       142 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~-g~~g~a~a~~i~---~~~~~~~~~~~~~~~  217 (460)
T 3mkt_A          142 AYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPEL-GGVGCGVATAIV---YWIMLLLLLFYIVTS  217 (460)
T ss_dssp             HHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCC-HHHHHHHHHHHH---HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccc-chhhHHHHHHHH---HHHHHHHHHHHHHhC
Confidence            4456667788999999999999888888777666443322110000000 000000000000   000000000000000


Q ss_pred             ---------hc-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 039534           93 ---------SD-GFKFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNI  162 (380)
Q Consensus        93 ---------~~-~~~~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~  162 (380)
                               ++ ...+++..|+++++++|..++.+...+...+|+.+++++|++++++++++.++.++..        ..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~--------~~  289 (460)
T 3mkt_A          218 KRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVF--------MF  289 (460)
T ss_dssp             SSCCCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHH--------HH
T ss_pred             cchhhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH--------HH
Confidence                     00 1234566799999999999999999999999999999999999999999999988873        34


Q ss_pred             hhhhhhhhHHHhhccCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHH
Q 039534          163 TTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAE  242 (380)
Q Consensus       163 ~~~l~~~~~~~va~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~  242 (380)
                      ..+++.+.+|.+++++|++|.          +++++..+++..+.+.++++++++++++++++..++..  |+++.+.+.
T Consensus       290 ~~~~~~a~~p~i~~~~g~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~~~~  357 (460)
T 3mkt_A          290 PMSIGAAVSIRVGHKLGEQDT----------KGAAIAANVGLMTGLATACITALLTVLFREQIALLYTE--NQVVVALAM  357 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCC----------CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC--CSTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHH
Confidence            667778889999999999988          99999999999999999999999999999999999874  567899999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhccCCchHHHHHHHHHH-HHHHHHHHHHHHh----hc-CChhHHHHHHHHHHHHHHH
Q 039534          243 NFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGN-LINAILDPILIFF----FH-FGIGGAAIATVISEYLIAF  316 (380)
Q Consensus       243 ~~l~~~~~~~~~~~l~~~~~~~l~g~g~~~~~~~~~i~~~-~i~i~l~~~li~~----~~-~Gi~Gaa~a~~is~~~~~~  316 (380)
                      .++++++++.++.+++.+..+++++.||++.++++++++. ++|+++++++++.    ++ +|+.|+++|+.+++.+..+
T Consensus       358 ~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~  437 (460)
T 3mkt_A          358 QLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAAL  437 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988 9999999999886    56 9999999999999999988


Q ss_pred             HHHHHHhcccc
Q 039534          317 ILIWKLSDNVL  327 (380)
Q Consensus       317 l~~~~~~~~~~  327 (380)
                      +..++++|+.+
T Consensus       438 ~~~~~~~~~~~  448 (460)
T 3mkt_A          438 MLGQRLYWLQK  448 (460)
T ss_dssp             HHHSSSSSSCC
T ss_pred             HHHHHHHHHHH
Confidence            87776655433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00