Citrus Sinensis ID: 039604

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370---
MVEQTQSQTQNQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPPSKIPLRPRKIRKLSPDNGVDQASSSQPTESSKATSAKSTKSRAIQQQQQTLTVPRIIARPLSSEGEVEAAIRHLRNADRQLASLIDIHPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWRFVEAKGAPSSAAAVAAGAALPQPQQEEQQQPQLLDQINSLINIGYNDFHINS
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccHHHHHHccccHHHHHHHHHHHHHHHccccccHHHccccHHHHHHHHHcccccccHHHHHHHHHccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHcccccccccccHHHccHHHHHHHHHHHHcccccccccc
cccccccccccccccccccccccccccccHHHHHccccccccccccEEccccccccccccccccccccccEEEEcccccccccccccccccHHccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHEEEcccccccHHHHHcccccHHcccHHHHHEccccccEEcc
mveqtqsqtqnqpepqpepetqpppnqdsttalavipvqtetannatithanvtpqtssppskiplrprkirklspdngvdqasssqptesskatsaksTKSRAIQQQQQTltvpriiarplssegEVEAAIRHLRNADRQLASlidihppptfdsfhtpfLALTRSILYQQLAFKAGTSIYTRFIALCggeagvvpetvlalTPQQLRqigvsgrkasYLHDLARKYqngilsdsaivnmdDKSLFTMLTMVNGIGSWSVHMFMIFslhrpdvlpindlgvrKGVQLLYSleelprpsqmdqlcekwrpyrSVASWYLWRFVeakgapssaAAVAagaalpqpqqeeqqqpQLLDQINSLInigyndfhins
mveqtqsqtqnqpepqpepeTQPPPNQDSTTALAVIPVQTETANNATIthanvtpqtssppskiplrprkirklspdngvdqasssqptesskatsakstksraiqqqqqtltvpriiarplSSEGEVEAAIRHLRNADRQLASLIDIHPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYsleelprpsqmdqlcEKWRPYRSVASWYLWRFVEAKGAPSSAAAVAAGAALPQPQQEEQQQPQLLDQINSLINIGYNDFHINS
MVeqtqsqtqnqpepqpepetqpppnqDSTTALAVIPVQTETANNATITHANVTPQTSSPPSKIPLRPRKIRKLSPDNGVDQASSSQPTEsskatsakstksRAIQQQQQTLTVPRIIARPLSSEGEVEAAIRHLRNADRQLASLIDIHPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWRFVEAKgapssaaavaagaalpqpqqeeqqqpqlLDQINSLINIGYNDFHINS
********************************************************************************************************************II***********AAIRHLRNADRQLASLIDIHPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWRFVEAK*****************************DQINSLINIGYNDFH***
****************************************************************************************************************TVPRIIARPLSSEGEVEAAIRHLRNADRQLASLIDIHPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWRFVE***********************************SLINIGYNDFHI**
*****************************TTALAVIPVQTETANNATITHAN************PLRPRKIRKLS************************************LTVPRIIARPLSSEGEVEAAIRHLRNADRQLASLIDIHPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWRFVEAKG************************PQLLDQINSLINIGYNDFHINS
***************************************TETANNATITHANVTPQTSSPPSKIPLRPRKIRKLSPDNG*******************************TLTVPRIIARPLSSEGEVEAAIRHLRNADRQLASLIDIHPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWRFVEAKGAPSSAAAVAAGAALPQP***EQQQPQLLDQINSLINIGYNDFHINS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MVEQTQSQTQNQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPPSKIPLRPRKIRKLSPDNGVDQASSSQPTESSKATSAKSTKSRAIQQQQQTLTVPRIIARPLSSEGEVEAAIRHLRNADRQLASLIDIHPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWRFVEAKGAPSSAAAVAAGAALPQPQQEEQQQPQLLDQINSLINIGYNDFHINS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query373 2.2.26 [Sep-21-2011]
Q92383228 DNA-3-methyladenine glyco yes no 0.504 0.824 0.307 9e-23
O94468213 Probable DNA-3-methyladen no no 0.538 0.943 0.273 2e-22
O31544287 Putative DNA-3-methyladen yes no 0.544 0.707 0.294 3e-22
P37878303 DNA-3-methyladenine glyco no no 0.431 0.531 0.276 8e-13
P22134296 DNA-3-methyladenine glyco yes no 0.479 0.604 0.294 3e-11
Q10630496 Probable bifunctional tra yes no 0.386 0.290 0.264 0.0001
P04395282 DNA-3-methyladenine glyco N/A no 0.415 0.549 0.238 0.0006
>sp|Q92383|MAG1_SCHPO DNA-3-methyladenine glycosylase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mag1 PE=1 SV=1 Back     alignment and function desciption
 Score =  108 bits (269), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 4/192 (2%)

Query: 134 HLRNAD---RQLASLIDIHPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCG 190
           HL   D   ++L  L+  + P        P+  L R++  QQL  KA  +I+ RF ++  
Sbjct: 21  HLSGLDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRFKSISN 80

Query: 191 GEAGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGIL-SDSAIVNMDDKSLFTM 249
                 PE +  +  + +R  G S RK   L  +A    +G++ +      + ++ L   
Sbjct: 81  NGQFPTPEEIRDMDFEIMRACGFSARKIDSLKSIAEATISGLIPTKEEAERLSNEELIER 140

Query: 250 LTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWR 309
           LT + GIG W+V M +IFSL+R DV+P +DL +R G + L+ L ++P    + +  E   
Sbjct: 141 LTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPKIPTKMYVLKHSEICA 200

Query: 310 PYRSVASWYLWR 321
           P+R+ A+WYLW+
Sbjct: 201 PFRTAAAWYLWK 212
Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine or 7-methyladenine from the damaged DNA polymer formed by alkylation lesions. Can release ethylated and propylated bases from DNA in addition to 3-methyladenine.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: 2EC: 1
>sp|O94468|MAG2_SCHPO Probable DNA-3-methyladenine glycosylase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mag2 PE=1 SV=1 Back     alignment and function description
>sp|O31544|YFJP_BACSU Putative DNA-3-methyladenine glycosylase YfjP OS=Bacillus subtilis (strain 168) GN=yfjP PE=3 SV=1 Back     alignment and function description
>sp|P37878|3MGA_BACSU DNA-3-methyladenine glycosylase OS=Bacillus subtilis (strain 168) GN=alkA PE=1 SV=1 Back     alignment and function description
>sp|P22134|MAG_YEAST DNA-3-methyladenine glycosylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAG1 PE=1 SV=1 Back     alignment and function description
>sp|Q10630|ALKA_MYCTU Probable bifunctional transcriptional activator/DNA repair enzyme AlkA OS=Mycobacterium tuberculosis GN=alkA PE=3 SV=1 Back     alignment and function description
>sp|P04395|3MG2_ECOLI DNA-3-methyladenine glycosylase 2 OS=Escherichia coli (strain K12) GN=alkA PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query373
255538662369 DNA-3-methyladenine glycosylase, putativ 0.782 0.791 0.793 1e-140
356510199374 PREDICTED: probable DNA-3-methyladenine 0.919 0.917 0.663 1e-133
225458267363 PREDICTED: DNA-3-methyladenine glycosyla 0.930 0.955 0.663 1e-132
255644446351 unknown [Glycine max] 0.849 0.903 0.724 1e-130
356518850351 PREDICTED: DNA-3-methyladenine glycosyla 0.849 0.903 0.727 1e-130
224066215381 predicted protein [Populus trichocarpa] 0.839 0.821 0.729 1e-129
297844924 1262 predicted protein [Arabidopsis lyrata su 0.973 0.287 0.638 1e-125
224082864374 predicted protein [Populus trichocarpa] 0.970 0.967 0.668 1e-125
302142502351 unnamed protein product [Vitis vinifera] 0.780 0.829 0.674 1e-123
8778423 1314 F18O14.25 [Arabidopsis thaliana] 0.970 0.275 0.640 1e-123
>gi|255538662|ref|XP_002510396.1| DNA-3-methyladenine glycosylase, putative [Ricinus communis] gi|223551097|gb|EEF52583.1| DNA-3-methyladenine glycosylase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/310 (79%), Positives = 269/310 (86%), Gaps = 18/310 (5%)

Query: 57  TSSPPSKIP-LRPRKIRKLSPDNGVDQASSSQPTESSKATSAKSTKSRAIQQQQQTLTVP 115
           T++PP+KIP  RPRK+RKLSP+                 ++AKSTK++  Q +   +  P
Sbjct: 71  TATPPAKIPPSRPRKLRKLSPE-----------------SAAKSTKTKTPQPRALAVAPP 113

Query: 116 RIIARPLSSEGEVEAAIRHLRNADRQLASLIDIHPPPTFDSFHTPFLALTRSILYQQLAF 175
           RIIAR LS EGEVE AIRHLR AD  L+SLID+HPPPTFD+FHTPFLALTRSILYQQLAF
Sbjct: 114 RIIARSLSCEGEVENAIRHLREADPLLSSLIDLHPPPTFDTFHTPFLALTRSILYQQLAF 173

Query: 176 KAGTSIYTRFIALCGGEAGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSD 235
           KAGTSIYTRFI+LCGGEAGVVP+TVLALTPQQLRQIGVSGRKASYLHDLARKY NGILSD
Sbjct: 174 KAGTSIYTRFISLCGGEAGVVPDTVLALTPQQLRQIGVSGRKASYLHDLARKYHNGILSD 233

Query: 236 SAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEEL 295
           SAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLY+LE+L
Sbjct: 234 SAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYNLEDL 293

Query: 296 PRPSQMDQLCEKWRPYRSVASWYLWRFVEAKGAPSSAAAVAAGAALPQPQQEEQQQPQLL 355
           PRPSQMDQLCEKWRPYRSVASWYLWRFVEAKG+PSSA AVA GAAL Q  QE+ QQPQLL
Sbjct: 294 PRPSQMDQLCEKWRPYRSVASWYLWRFVEAKGSPSSAVAVATGAALTQQHQEDHQQPQLL 353

Query: 356 DQINSLINIG 365
           D INS++N+G
Sbjct: 354 DPINSILNLG 363

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356510199|ref|XP_003523827.1| PREDICTED: probable DNA-3-methyladenine glycosylase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|225458267|ref|XP_002282344.1| PREDICTED: DNA-3-methyladenine glycosylase 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255644446|gb|ACU22727.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356518850|ref|XP_003528090.1| PREDICTED: DNA-3-methyladenine glycosylase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|224066215|ref|XP_002302029.1| predicted protein [Populus trichocarpa] gi|222843755|gb|EEE81302.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297844924|ref|XP_002890343.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297336185|gb|EFH66602.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224082864|ref|XP_002306870.1| predicted protein [Populus trichocarpa] gi|222856319|gb|EEE93866.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|302142502|emb|CBI19705.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|8778423|gb|AAF79431.1|AC025808_13 F18O14.25 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query373
TAIR|locus:2025127394 AT1G75230 [Arabidopsis thalian 0.769 0.728 0.711 1.9e-106
TAIR|locus:2016457382 AT1G19480 [Arabidopsis thalian 0.769 0.751 0.684 5.4e-102
TAIR|locus:2077947273 AT3G50880 [Arabidopsis thalian 0.568 0.776 0.645 5.9e-76
ASPGD|ASPL0000073519391 AN4389 [Emericella nidulans (t 0.343 0.327 0.403 4.8e-28
POMBASE|SPAPB24D3.04c228 mag1 "DNA-3-methyladenine glyc 0.504 0.824 0.307 1e-22
POMBASE|SPBC23G7.11213 mag2 "DNA-3-methyladenine glyc 0.536 0.938 0.274 1.6e-22
UNIPROTKB|Q0BWS7213 HNE_3393 "Putative DNA-3-methy 0.536 0.938 0.315 1.5e-19
UNIPROTKB|Q5LRK0210 SPO2127 "DNA-3-methyladenine g 0.528 0.938 0.295 3e-16
TIGR_CMR|SPO_2127210 SPO_2127 "DNA-3-methyladenine 0.528 0.938 0.295 3e-16
TIGR_CMR|BA_3871303 BA_3871 "DNA-3-methyladenine g 0.335 0.412 0.293 8.9e-13
TAIR|locus:2025127 AT1G75230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
 Identities = 207/291 (71%), Positives = 232/291 (79%)

Query:    38 VQTETANNATITHANVTP--QTSSPPSKIPLRPRKIRKLSPDNGVDQASSSQPTEXXXXX 95
             V     ++ TI    VT     SSPP+KIPLRPRKIRKLSPD+  D +    P       
Sbjct:    45 VSGSIVSSTTIEAPQVTELGNVSSPPTKIPLRPRKIRKLSPDD--DASDGFNPEHNLSQM 102

Query:    96 XXXXXXXRAIQQQQQTLTVPRIIARPLSSEGEVEAAIRHLRNADRQLASLIDIHPPPTFD 155
                    ++   Q +T+TVPRI AR L+ EGE+EAA+ HLR+ D  LASLIDIHPPPTF+
Sbjct:   103 TTTKPATKSKLSQSRTVTVPRIQARSLTCEGELEAALHHLRSVDPLLASLIDIHPPPTFE 162

Query:   156 SFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVLALTPQQLRQIGVSG 215
             +F TPFLAL RSILYQQLA KAG SIYTRF+ALCGGE GVVPE VL LTPQQLRQIGVSG
Sbjct:   163 TFQTPFLALIRSILYQQLAAKAGNSIYTRFVALCGGENGVVPENVLPLTPQQLRQIGVSG 222

Query:   216 RKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVL 275
             RKASYLHDLARKYQNGILSDS IVNMD+KSLFTMLTMVNGIGSWSVHMFMI SLHRPDVL
Sbjct:   223 RKASYLHDLARKYQNGILSDSGIVNMDEKSLFTMLTMVNGIGSWSVHMFMINSLHRPDVL 282

Query:   276 PINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWRFVEAK 326
             P+NDLGVRKGVQ+L  +E+LPRPS+M+QLCEKWRPYRSVASWYLWR +E+K
Sbjct:   283 PVNDLGVRKGVQMLNGMEDLPRPSKMEQLCEKWRPYRSVASWYLWRLIESK 333
GO:0003824 "catalytic activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006281 "DNA repair" evidence=IEA
GO:0006284 "base-excision repair" evidence=IEA;ISS
TAIR|locus:2016457 AT1G19480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077947 AT3G50880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000073519 AN4389 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPAPB24D3.04c mag1 "DNA-3-methyladenine glycosylase Mag1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
POMBASE|SPBC23G7.11 mag2 "DNA-3-methyladenine glycosidase Mag2" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q0BWS7 HNE_3393 "Putative DNA-3-methyladenine glycosylase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LRK0 SPO2127 "DNA-3-methyladenine glycosylase II, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2127 SPO_2127 "DNA-3-methyladenine glycosylase II, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3871 BA_3871 "DNA-3-methyladenine glycosidase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2.21LOW CONFIDENCE prediction!
3rd Layer3.2.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0003029501
hypothetical protein (382 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query373
COG0122285 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-o 7e-59
pfam00730144 pfam00730, HhH-GPD, HhH-GPD superfamily base excis 9e-35
cd00056158 cd00056, ENDO3c, endonuclease III; includes endonu 2e-30
smart00478149 smart00478, ENDO3c, endonuclease III 3e-14
PRK10308283 PRK10308, PRK10308, 3-methyl-adenine DNA glycosyla 7e-04
>gnl|CDD|223200 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  192 bits (489), Expect = 7e-59
 Identities = 80/221 (36%), Positives = 115/221 (52%), Gaps = 13/221 (5%)

Query: 114 VPRIIARPLSSEGEVEAAIRHLRNADRQLASLIDIHPPPTFDSF--------HTPFLALT 165
              + A       ++EAA+R L + D  LA +ID   P                PF AL 
Sbjct: 51  AGLVSASREPVAEDIEAALRRLFDLDPDLAPIIDALGPLPLLRAPGLRLPLAPDPFEALV 110

Query: 166 RSILYQQLAFKAGTSIYTRFIALCGGEAGVV-----PETVLALTPQQLRQIGVSGRKASY 220
           R+IL QQ++  A   I+ R ++L G    +      PE + A   + LR+ G+SGRKA Y
Sbjct: 111 RAILSQQVSVAAAAKIWARLVSLYGNALEIYHSFPTPEQLAAADEEALRRCGLSGRKAEY 170

Query: 221 LHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDL 280
           +  LAR    G L  S +  + D+     LT + GIG W+  MF++F L RPDV P +DL
Sbjct: 171 IISLARAAAEGELDLSELKPLSDEEAIEELTALKGIGPWTAEMFLLFGLGRPDVFPADDL 230

Query: 281 GVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWR 321
           G+R+ ++ LY L   P   ++ +L E+W PYRS A+ YLWR
Sbjct: 231 GLRRAIKKLYRLPTRPTEKEVRELAERWGPYRSYAALYLWR 271

Length = 285
>gnl|CDD|216088 pfam00730, HhH-GPD, HhH-GPD superfamily base excision DNA repair protein Back     alignment and domain information
>gnl|CDD|238013 cd00056, ENDO3c, endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>gnl|CDD|214684 smart00478, ENDO3c, endonuclease III Back     alignment and domain information
>gnl|CDD|236671 PRK10308, PRK10308, 3-methyl-adenine DNA glycosylase II; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 373
KOG1918254 consensus 3-methyladenine DNA glycosidase [Replica 100.0
COG0122285 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine 100.0
PRK10308283 3-methyl-adenine DNA glycosylase II; Provisional 100.0
TIGR00588310 ogg 8-oxoguanine DNA-glycosylase (ogg). All protei 100.0
cd00056158 ENDO3c endonuclease III; includes endonuclease III 99.97
COG0177211 Nth Predicted EndoIII-related endonuclease [DNA re 99.97
TIGR01083191 nth endonuclease III. This equivalog model identif 99.97
KOG2875323 consensus 8-oxoguanine DNA glycosylase [Replicatio 99.96
PRK10702211 endonuclease III; Provisional 99.96
PRK13913218 3-methyladenine DNA glycosylase; Provisional 99.95
smart00478149 ENDO3c endonuclease III. includes endonuclease III 99.95
TIGR01084275 mutY A/G-specific adenine glycosylase. This equiva 99.94
PRK10880 350 adenine DNA glycosylase; Provisional 99.92
PRK01229208 N-glycosylase/DNA lyase; Provisional 99.87
PRK13910 289 DNA glycosylase MutY; Provisional 99.83
COG2231215 Uncharacterized protein related to Endonuclease II 99.82
KOG1921286 consensus Endonuclease III [Replication, recombina 99.79
PF00730108 HhH-GPD: HhH-GPD superfamily base excision DNA rep 99.76
TIGR03252177 uncharacterized HhH-GPD family protein. This model 99.74
COG1194 342 MutY A/G-specific DNA glycosylase [DNA replication 99.66
KOG2457 555 consensus A/G-specific adenine DNA glycosylase [Re 98.81
COG1059210 Thermostable 8-oxoguanine DNA glycosylase [DNA rep 98.46
PF0063330 HHH: Helix-hairpin-helix motif; InterPro: IPR00044 97.55
PF07934117 OGG_N: 8-oxoguanine DNA glycosylase, N-terminal do 97.47
smart0027826 HhH1 Helix-hairpin-helix DNA-binding motif class 1 94.15
PRK13901196 ruvA Holliday junction DNA helicase RuvA; Provisio 91.41
PF06029116 AlkA_N: AlkA N-terminal domain; InterPro: IPR01031 90.31
PF1282664 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS 90.27
PRK14606188 ruvA Holliday junction DNA helicase RuvA; Provisio 90.08
PRK14601183 ruvA Holliday junction DNA helicase RuvA; Provisio 89.82
PRK14602203 ruvA Holliday junction DNA helicase RuvA; Provisio 89.11
PRK13844200 recombination protein RecR; Provisional 89.06
PRK00076196 recR recombination protein RecR; Reviewed 88.98
PRK14603197 ruvA Holliday junction DNA helicase RuvA; Provisio 88.86
TIGR00624179 tag DNA-3-methyladenine glycosylase I. This family 88.76
TIGR00615195 recR recombination protein RecR. This family is ba 88.69
PRK14604195 ruvA Holliday junction DNA helicase RuvA; Provisio 88.35
PF1452060 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU 87.45
COG0353198 RecR Recombinational DNA repair protein (RecF path 86.57
PF1471668 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HU 85.54
COG0632201 RuvA Holliday junction resolvasome, DNA-binding su 85.35
PRK14600186 ruvA Holliday junction DNA helicase RuvA; Provisio 84.74
PRK14605194 ruvA Holliday junction DNA helicase RuvA; Provisio 83.38
TIGR00084191 ruvA Holliday junction DNA helicase, RuvA subunit. 83.04
PF1452060 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU 82.99
smart00483 334 POLXc DNA polymerase X family. includes vertebrate 82.52
PF1173193 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd 82.46
PF1283665 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE 81.1
TIGR00084191 ruvA Holliday junction DNA helicase, RuvA subunit. 81.1
PF0237187 Transposase_20: Transposase IS116/IS110/IS902 fami 80.64
PRK14605194 ruvA Holliday junction DNA helicase RuvA; Provisio 80.34
cd00141307 NT_POLXc Nucleotidyltransferase (NT) domain of fam 80.24
>KOG1918 consensus 3-methyladenine DNA glycosidase [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-48  Score=357.71  Aligned_cols=225  Identities=47%  Similarity=0.788  Sum_probs=210.2

Q ss_pred             hhcchhhhhcCCCCCchhHHHHHHHHHhhChHHHHHHHhCCCCCcCCCCCHHHHHHHHHHhhccCHHHHHHHHHHHHHHh
Q 039604          110 QTLTVPRIIARPLSSEGEVEAAIRHLRNADRQLASLIDIHPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALC  189 (373)
Q Consensus       110 r~~~~~~~~~r~l~ld~Dl~~~~~~L~~~Dp~La~li~~~gg~r~~~~~dpfE~LV~aILsQQ~S~~aA~~i~~rL~~~~  189 (373)
                      |.+.+...-+.+++.....+..+.||.+.||.|..++..+.++++...+.||+.|+++|++||++.++|++|+.||+..|
T Consensus        25 r~~~v~~~~~~~~s~~~k~e~al~hl~~kd~~L~~lv~~~~p~~~~~~q~Pf~~LiraIlsQQLs~kAansI~~Rfvsl~  104 (254)
T KOG1918|consen   25 RPLEVILPEKYILSHEEKAEIALSHLDEKDPSLVKLVGNHEPLTFKETQTPFERLIRAILSQQLSGKAANSIYNRFVSLC  104 (254)
T ss_pred             CCcccccccccccccHHHHHHHHHhhhhcchHHHHHhcCCCCCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55666666667888889999999999999999999999999899988999999999999999999999999999999999


Q ss_pred             CC-CCCCCHHHHhcCChHHHHhcCCChhHHHHHHHHHHHHHcCC-CCchhhhCCChHHHHHHHhcCCCCCHHHHHHHHHH
Q 039604          190 GG-EAGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGI-LSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIF  267 (373)
Q Consensus       190 G~-~~~ptPe~La~l~~eeLr~~Gls~~KA~yI~~lA~~i~~G~-l~L~~L~~~~~ee~~~~L~sLpGIGpwTA~~vLLf  267 (373)
                      |+ ..|++|+.+..++.++|+.||||++|+.||+.+|+++.+|- .+.+.+.+|+.|++++.|+.++|||+||++|+|+|
T Consensus       105 ~g~~~~~~pe~i~~~~~~~lrkcG~S~rK~~yLh~lA~~~~ng~I~s~~~i~~mseEeL~~~LT~VKGIg~Wtv~MflIf  184 (254)
T KOG1918|consen  105 GGAEKFPTPEFIDPLDCEELRKCGFSKRKASYLHSLAEAYTNGYIPSKSGIEKMSEEELIERLTNVKGIGRWTVEMFLIF  184 (254)
T ss_pred             CCCcCCCCchhcCcCCHHHHHHhCcchhhHHHHHHHHHHHhcCCCCchHHHhhcCHHHHHHHHHhccCccceeeeeeeee
Confidence            98 56899999999999999999999999999999999999994 57778899999999999999999999999999999


Q ss_pred             hCCCCCccCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCCchHHHHHHHHHhhhhcCCCCchhh
Q 039604          268 SLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWRFVEAKGAPSSAAA  334 (373)
Q Consensus       268 ~lgrpDvfPv~D~~VrR~l~rlygl~~~~~~~e~~~l~e~w~Pyrg~a~~yLW~~~~~~~~~~~~~~  334 (373)
                      +|+|+||||++|++|+++++.+||+...+.+++|+++++.|+|||+++.||||+.++.+.-++...+
T Consensus       185 sL~R~DVmp~dDlgir~g~k~l~gl~~~p~~~evekl~e~~kpyRtvaawYlWki~~~~~~~k~~~~  251 (254)
T KOG1918|consen  185 SLHRPDVMPADDLGIRNGVKKLLGLKPLPLPKEVEKLCEKCKPYRTVAAWYLWKIIKLDITEKCSET  251 (254)
T ss_pred             ccCCCcccCchhhhHHHHHHHHhCCCCCCchHHHHHHhhhccchHHHHHHHHHhhhhhhccCCCccc
Confidence            9999999999999999999999999999999999999999999999999999999988776655543

>COG0122 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional Back     alignment and domain information
>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg) Back     alignment and domain information
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01083 nth endonuclease III Back     alignment and domain information
>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair] Back     alignment and domain information
>PRK10702 endonuclease III; Provisional Back     alignment and domain information
>PRK13913 3-methyladenine DNA glycosylase; Provisional Back     alignment and domain information
>smart00478 ENDO3c endonuclease III Back     alignment and domain information
>TIGR01084 mutY A/G-specific adenine glycosylase Back     alignment and domain information
>PRK10880 adenine DNA glycosylase; Provisional Back     alignment and domain information
>PRK01229 N-glycosylase/DNA lyase; Provisional Back     alignment and domain information
>PRK13910 DNA glycosylase MutY; Provisional Back     alignment and domain information
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1921 consensus Endonuclease III [Replication, recombination and repair] Back     alignment and domain information
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4 Back     alignment and domain information
>TIGR03252 uncharacterized HhH-GPD family protein Back     alignment and domain information
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair] Back     alignment and domain information
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ] Back     alignment and domain information
>PF07934 OGG_N: 8-oxoguanine DNA glycosylase, N-terminal domain; InterPro: IPR012904 The presence of 8-oxoguanine residues in DNA can give rise to G-C to T-A transversion mutations Back     alignment and domain information
>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1 Back     alignment and domain information
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PF06029 AlkA_N: AlkA N-terminal domain; InterPro: IPR010316 This domain is found at the N terminus of bacterial AlkA 3 Back     alignment and domain information
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B Back     alignment and domain information
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK13844 recombination protein RecR; Provisional Back     alignment and domain information
>PRK00076 recR recombination protein RecR; Reviewed Back     alignment and domain information
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>TIGR00624 tag DNA-3-methyladenine glycosylase I Back     alignment and domain information
>TIGR00615 recR recombination protein RecR Back     alignment and domain information
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A Back     alignment and domain information
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair] Back     alignment and domain information
>PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A Back     alignment and domain information
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit Back     alignment and domain information
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A Back     alignment and domain information
>smart00483 POLXc DNA polymerase X family Back     alignment and domain information
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria [] Back     alignment and domain information
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A Back     alignment and domain information
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit Back     alignment and domain information
>PF02371 Transposase_20: Transposase IS116/IS110/IS902 family; InterPro: IPR003346 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA Back     alignment and domain information
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query373
2h56_A233 Crystal Structure Of Dna-3-methyladenine Glycosidas 1e-24
3s6i_A228 Schizosaccaromyces Pombe 3-Methyladenine Dna Glycos 3e-24
4b21_A232 Unprecedented Sculpting Of Dna At Abasic Sites By D 5e-24
4hsb_A217 S. Pombe 3-methyladenine Dna Glycosylase-like Prote 5e-24
2yg9_A225 Structure Of An Unusual 3-Methyladenine Dna Glycosy 3e-22
2yg8_A225 Structure Of An Unusual 3-Methyladenine Dna Glycosy 1e-21
2jhj_A295 3-Methyladenine Dna-Glycosylase From Archaeoglobus 6e-06
2jhn_A295 3-Methyladenine Dna-Glycosylase From Archaeoglobus 6e-06
3ogd_A289 Alka Undamaged Dna Complex: Interrogation Of A G:c 8e-06
3oh6_A289 Alka Undamaged Dna Complex: Interrogation Of A C:g 9e-06
1mpg_A282 3-Methyladenine Dna Glycosylase Ii From Escherichia 1e-05
>pdb|2H56|A Chain A, Crystal Structure Of Dna-3-methyladenine Glycosidase (10174367) From Bacillus Halodurans At 2.55 A Resolution Length = 233 Back     alignment and structure 
Iteration: 1

 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 95/183 (51%), Gaps = 1/183 (0%)
Query: 139 DRQLASLIDIHPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPE 198
           D +L   I+I       +   PF +L  SI+ QQL+ KA ++IY R   L GG A   PE
Sbjct: 30  DSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGG-ALEKPE 88
Query: 199 TVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGS 258
            +  ++ + LRQ GVS RK  Y+  +    ++G L  + +   +  ++   LT + GIG 
Sbjct: 89  QLYRVSDEALRQAGVSKRKIEYIRHVCEHVESGRLDFTELEGAEATTVIEKLTAIKGIGQ 148
Query: 259 WSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWY 318
           W+   F  FSL R DVL + D+G+++G + LY   E      +    + W PY +VA  Y
Sbjct: 149 WTAEXFXXFSLGRLDVLSVGDVGLQRGAKWLYGNGEGDGKKLLIYHGKAWAPYETVACLY 208
Query: 319 LWR 321
           LW+
Sbjct: 209 LWK 211
>pdb|3S6I|A Chain A, Schizosaccaromyces Pombe 3-Methyladenine Dna Glycosylase (Mag1) In Complex With Abasic-Dna. Length = 228 Back     alignment and structure
>pdb|4B21|A Chain A, Unprecedented Sculpting Of Dna At Abasic Sites By Dna Glycosylase Homolog Mag2 Length = 232 Back     alignment and structure
>pdb|4HSB|A Chain A, S. Pombe 3-methyladenine Dna Glycosylase-like Protein Mag2 Bound To Damaged Dna Length = 217 Back     alignment and structure
>pdb|2YG9|A Chain A, Structure Of An Unusual 3-Methyladenine Dna Glycosylase Ii ( Alka) From Deinococcus Radiodurans Length = 225 Back     alignment and structure
>pdb|2YG8|A Chain A, Structure Of An Unusual 3-Methyladenine Dna Glycosylase Ii ( Alka) From Deinococcus Radiodurans Length = 225 Back     alignment and structure
>pdb|2JHJ|A Chain A, 3-Methyladenine Dna-Glycosylase From Archaeoglobus Fulgidus Length = 295 Back     alignment and structure
>pdb|2JHN|A Chain A, 3-Methyladenine Dna-Glycosylase From Archaeoglobus Fulgidus Length = 295 Back     alignment and structure
>pdb|3OGD|A Chain A, Alka Undamaged Dna Complex: Interrogation Of A G:c Base Pair Length = 289 Back     alignment and structure
>pdb|3OH6|A Chain A, Alka Undamaged Dna Complex: Interrogation Of A C:g Base Pair Length = 289 Back     alignment and structure
>pdb|1MPG|A Chain A, 3-Methyladenine Dna Glycosylase Ii From Escherichia Coli Length = 282 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query373
2h56_A233 DNA-3-methyladenine glycosidase; 10174367, EC 3.2. 6e-87
3s6i_A228 DNA-3-methyladenine glycosylase 1; DNA glycosylase 3e-84
2yg9_A225 DNA-3-methyladenine glycosidase II, putative; hydr 2e-77
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 2e-61
1mpg_A282 ALKA, 3-methyladenine DNA glycosylase II; DNA repa 2e-58
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 7e-46
2xhi_A360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 1e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} Length = 233 Back     alignment and structure
 Score =  261 bits (669), Expect = 6e-87
 Identities = 63/196 (32%), Positives = 100/196 (51%), Gaps = 1/196 (0%)

Query: 129 EAAIRHLRNADRQLASLIDIHPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIAL 188
              ++ +   D +L   I+I       +   PF +L  SI+ QQL+ KA ++IY R   L
Sbjct: 20  SPEVKTIVAQDSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQL 79

Query: 189 CGGEAGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFT 248
            GG     PE +  ++ + LRQ GVS RK  Y+  +    ++G L  + +   +  ++  
Sbjct: 80  VGGAL-EKPEQLYRVSDEALRQAGVSKRKIEYIRHVCEHVESGRLDFTELEGAEATTVIE 138

Query: 249 MLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKW 308
            LT + GIG W+  MFM+FSL R DVL + D+G+++G + LY   E      +    + W
Sbjct: 139 KLTAIKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQRGAKWLYGNGEGDGKKLLIYHGKAW 198

Query: 309 RPYRSVASWYLWRFVE 324
            PY +VA  YLW+   
Sbjct: 199 APYETVACLYLWKAAG 214
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe} Length = 228 Back     alignment and structure
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A Length = 225 Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Length = 295 Back     alignment and structure
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A* Length = 282 Back     alignment and structure
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Length = 290 Back     alignment and structure
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Length = 360 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query373
4b21_A232 Probable DNA-3-methyladenine glycosylase 2; hydrol 100.0
3s6i_A228 DNA-3-methyladenine glycosylase 1; DNA glycosylase 100.0
2yg9_A225 DNA-3-methyladenine glycosidase II, putative; hydr 100.0
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 100.0
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 100.0
2h56_A233 DNA-3-methyladenine glycosidase; 10174367, EC 3.2. 100.0
2xhi_A360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 100.0
1mpg_A282 ALKA, 3-methyladenine DNA glycosylase II; DNA repa 100.0
1orn_A226 Endonuclease III; DNA repair, DNA glycosylase, [4F 99.97
1kea_A221 Possible G-T mismatches repair enzyme; DNA repair, 99.97
2abk_A211 Endonuclease III; DNA-repair, DNA glycosylase; 1.8 99.97
1kg2_A225 A/G-specific adenine glycosylase; DNA repair, hydr 99.96
1pu6_A218 3-methyladenine DNA glycosylase; helix-hairpin-hel 99.95
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 99.95
3n0u_A219 Probable N-glycosylase/DNA lyase; structural genom 99.94
3fsp_A 369 A/G-specific adenine glycosylase; protein-DNA comp 99.94
3n5n_X287 A/G-specific adenine DNA glycosylase; alpha-helice 99.93
3fhf_A214 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 99.92
4e9f_A161 Methyl-CPG-binding domain protein 4; HHH DNA glyco 99.86
3vdp_A212 Recombination protein RECR; zinc finger, DNA repai 90.23
1vdd_A228 Recombination protein RECR; helix-hairpin-helix, z 89.31
4glx_A586 DNA ligase; inhibitor, ligase-ligase inhibitor-DNA 86.91
4gfj_A685 Topoisomerase V; helix-hairpin-helix, DNA repair e 86.19
1s5l_U134 Photosystem II 12 kDa extrinsic protein; photosynt 85.48
2ztd_A212 Holliday junction ATP-dependent DNA helicase RUVA; 81.86
2bcq_A 335 DNA polymerase lambda; misalignment, extrahelical, 81.17
2ihm_A 360 POL MU, DNA polymerase MU; helix-turn-helix, trans 80.56
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A* Back     alignment and structure
Probab=100.00  E-value=4.9e-50  Score=377.39  Aligned_cols=206  Identities=27%  Similarity=0.538  Sum_probs=194.7

Q ss_pred             CCCCCchhHHHHHHHHHhhChHHHHHHHhCCCCCcC--CCCCHHHHHHHHHHhhccCHHHHHHHHHHHHHHhCCCC-CCC
Q 039604          120 RPLSSEGEVEAAIRHLRNADRQLASLIDIHPPPTFD--SFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEA-GVV  196 (373)
Q Consensus       120 r~l~ld~Dl~~~~~~L~~~Dp~La~li~~~gg~r~~--~~~dpfE~LV~aILsQQ~S~~aA~~i~~rL~~~~G~~~-~pt  196 (373)
                      .+|+||.|+++++++|.+.||.|+.+++.+|+++++  ...||||+||++||+||++++++.+++.+|+++||+.. ||+
T Consensus        18 ~~ldld~d~~~~~~~L~~~Dp~l~~li~~~~g~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPt   97 (232)
T 4b21_A           18 SHMSKDSDYKRAEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPT   97 (232)
T ss_dssp             ---CHHHHHHHHHHHHTTTCHHHHHHHHHHCSCCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCC
T ss_pred             CcCCCccCHHHHHHHHHhhCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCC
Confidence            479999999999999998899999999999998875  35699999999999999999999999999999999754 799


Q ss_pred             HHHHhcCChHHHHhcCCChhHHHHHHHHHHHHHcCCC-CchhhhCCChHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCcc
Q 039604          197 PETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGIL-SDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVL  275 (373)
Q Consensus       197 Pe~La~l~~eeLr~~Gls~~KA~yI~~lA~~i~~G~l-~L~~L~~~~~ee~~~~L~sLpGIGpwTA~~vLLf~lgrpDvf  275 (373)
                      |++|+.+++++|+.|||+++|++||+++|+++.+|.+ +++.|.+++++++++.|++|||||+|||+|||+|+||++|+|
T Consensus        98 pe~la~~~~e~Lr~~Gl~~~Ka~~l~~~A~~~~~g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~f  177 (232)
T 4b21_A           98 PKQIMETDVETLHECGFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIM  177 (232)
T ss_dssp             HHHHHTSCHHHHHTTTCCHHHHHHHHHHHHHHHTTCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCC
T ss_pred             HHHHHcCCHHHHHHcCCcHHHHHHHHHHHHHHHhCCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCee
Confidence            9999999999999999999999999999999999999 799999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCCchHHHHHHHHHhhhh
Q 039604          276 PINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWRFVEA  325 (373)
Q Consensus       276 Pv~D~~VrR~l~rlygl~~~~~~~e~~~l~e~w~Pyrg~a~~yLW~~~~~  325 (373)
                      |++|+||+|+++++||++..+++++++++.+.|+||||||++|||++++.
T Consensus       178 pv~D~~v~r~~~rl~~~~~~~~~~~~~~~~e~w~P~rs~A~~yLw~~~~~  227 (232)
T 4b21_A          178 PADDSTLKNEAKEFFGLSSKPQTEEVEKLTKPCKPYRTIAAWYLWQIPKL  227 (232)
T ss_dssp             CTTCHHHHHHHHHHTTCSSCCCHHHHHHHTGGGTTCHHHHHHHHHTGGGC
T ss_pred             eCccHHHHHHHHHHhCCCCCCCHHHHHHHHHHccCHHHHHHHHHHHcCcc
Confidence            99999999999999999888899999999999999999999999999874
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe} Back     alignment and structure
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A Back     alignment and structure
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Back     alignment and structure
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} Back     alignment and structure
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Back     alignment and structure
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A* Back     alignment and structure
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Back     alignment and structure
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2 Back     alignment and structure
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Back     alignment and structure
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A Back     alignment and structure
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Back     alignment and structure
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Back     alignment and structure
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} Back     alignment and structure
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* Back     alignment and structure
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens} Back     alignment and structure
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A* Back     alignment and structure
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A Back     alignment and structure
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D Back     alignment and structure
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A Back     alignment and structure
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli} Back     alignment and structure
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19} Back     alignment and structure
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus} Back     alignment and structure
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A Back     alignment and structure
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... Back     alignment and structure
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 373
d1mpga1183 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosyla 3e-36
d2noha1190 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Hum 8e-22
d1pu6a_217 a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III 7e-08
d1ngna_144 a.96.1.2 (A:) Mismatch-specific thymine glycosylas 1e-04
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Length = 183 Back     information, alignment and structure

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: DNA repair glycosylase, 2 C-terminal domains
domain: 3-Methyladenine DNA glycosylase II (gene alkA or aidA)
species: Escherichia coli [TaxId: 562]

 Score =  127 bits (321), Expect = 3e-36
 Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 21/182 (11%)

Query: 148 IHPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVP--------ET 199
           +  P   D     F    R+IL Q ++      +  R   L G      P        + 
Sbjct: 6   LRLPGCVD----AFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQR 61

Query: 200 VLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSW 259
           + A  PQ L+ +G+  ++A  L  LA     G L  +     D +     L    GIG W
Sbjct: 62  LAAADPQALKALGMPLKRAEALIHLANAALEGTLPMTI--PGDVEQAMKTLQTFPGIGRW 119

Query: 260 SVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYL 319
           + + F +      DV   +D  +++    +        P+Q+ +  E+W+P+RS A  ++
Sbjct: 120 TANYFALRGWQAKDVFLPDDYLIKQRFPGMT-------PAQIRRYAERWKPWRSYALLHI 172

Query: 320 WR 321
           W 
Sbjct: 173 WY 174
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Length = 190 Back     information, alignment and structure
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Length = 217 Back     information, alignment and structure
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 144 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query373
d1mpga1183 3-Methyladenine DNA glycosylase II (gene alkA or a 100.0
d2noha1190 8-oxoguanine glycosylase {Human (Homo sapiens) [Ta 100.0
d1pu6a_217 3-Methyladenine DNA glycosylase III (MagIII) {Heli 99.96
d2abka_211 Endonuclease III {Escherichia coli [TaxId: 562]} 99.93
d1keaa_217 Thymine-DNA glycosylase {Archaeon Methanobacterium 99.93
d1orna_214 Endonuclease III {Escherichia coli [TaxId: 562]} 99.93
d1kg2a_224 Catalytic domain of MutY {Escherichia coli [TaxId: 99.92
d1rrqa1221 Catalytic domain of MutY {Bacillus stearothermophi 99.91
d1ngna_144 Mismatch-specific thymine glycosylase domain of th 99.88
d2noha2124 8-oxoguanine glycosylase {Human (Homo sapiens) [Ta 94.04
d1cuka278 DNA helicase RuvA subunit, middle domain {Escheric 93.89
d1bvsa271 DNA helicase RuvA subunit, middle domain {Mycobact 93.74
d1ixra173 DNA helicase RuvA subunit, middle domain {Thermus 93.26
d1dgsa1181 NAD+-dependent DNA ligase, domain 3 {Thermus filif 91.25
d2i1qa160 DNA repair protein Rad51, N-terminal domain {Archa 90.4
d1vdda_199 Recombination protein RecR {Deinococcus radioduran 89.9
d1bvsa271 DNA helicase RuvA subunit, middle domain {Mycobact 88.28
d1cuka278 DNA helicase RuvA subunit, middle domain {Escheric 87.02
d1ixra173 DNA helicase RuvA subunit, middle domain {Thermus 86.75
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 85.45
d1x2ia168 ATP-dependent RNA helicase PF2015 {Pyrococcus furi 85.34
d1nkua_187 3-Methyladenine DNA glycosylase I (Tag) {Escherich 84.6
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 82.68
d1pzna161 DNA repair protein Rad51, N-terminal domain {Archa 82.65
d2bcqa176 DNA polymerase lambda {Human (Homo sapiens) [TaxId 82.51
d2fmpa182 DNA polymerase beta, N-terminal (8 kD)-domain {Hum 82.28
d2a1ja162 DNA repair endonuclease XPF {Human (Homo sapiens) 82.08
d2bcqa257 DNA polymerase lambda {Human (Homo sapiens) [TaxId 81.57
d1y88a159 Hypothetical protein AF1548, C-terminal domain {Ar 81.56
d1jmsa360 Terminal deoxynucleotidyl transferase {Mouse (Mus 81.06
d2bgwa170 DNA repair endonuclease XPF {Aeropyrum pernix [Tax 80.35
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: DNA repair glycosylase, 2 C-terminal domains
domain: 3-Methyladenine DNA glycosylase II (gene alkA or aidA)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.1e-43  Score=315.15  Aligned_cols=169  Identities=24%  Similarity=0.384  Sum_probs=156.7

Q ss_pred             hCCCCCcCCCCCHHHHHHHHHHhhccCHHHHHHHHHHHHHHhCCCC--------CCCHHHHhcCChHHHHhcCCChhHHH
Q 039604          148 IHPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEA--------GVVPETVLALTPQQLRQIGVSGRKAS  219 (373)
Q Consensus       148 ~~gg~r~~~~~dpfE~LV~aILsQQ~S~~aA~~i~~rL~~~~G~~~--------~ptPe~La~l~~eeLr~~Gls~~KA~  219 (373)
                      ..||+|+.+..||||+||++||+||+|+++|.++++||++.+|+..        ||+|+.|+++++++|+.||++++|++
T Consensus         2 ~~pGlRi~~~~dpfe~Lv~~Ii~Qqis~~aA~~i~~rl~~~~g~~~~~~~~~~~FPtp~~l~~~~~~~lr~~Gls~~Ka~   81 (183)
T d1mpga1           2 ARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKALGMPLKRAE   81 (183)
T ss_dssp             TCTTCCCCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHHHHTTSCHHHHH
T ss_pred             cCCCCcCCCCCCHHHHHHHHHHhchhhHHHHHHHHHHHHHHhCccccccccccCCCcHHHHHcCCHHHHHHcCCcHHHHH
Confidence            3589999888999999999999999999999999999999999753        79999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCchhhhCCChHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCccCCCCHHHHHHHHHHhcCCCCCCHH
Q 039604          220 YLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPS  299 (373)
Q Consensus       220 yI~~lA~~i~~G~l~L~~L~~~~~ee~~~~L~sLpGIGpwTA~~vLLf~lgrpDvfPv~D~~VrR~l~rlygl~~~~~~~  299 (373)
                      ||+.+|+++.+|.+++.  ..++++|+++.|++|||||||||+|||||+||++|+||++|++|++.++.+       +++
T Consensus        82 ~i~~~a~~~~~g~l~~~--~~~~~~e~~~~L~~l~GIGpwTAd~illf~lg~~dvfP~~D~~lr~~~~~l-------~~~  152 (183)
T d1mpga1          82 ALIHLANAALEGTLPMT--IPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFPGM-------TPA  152 (183)
T ss_dssp             HHHHHHHHHHHTCSCSS--CCSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCCTTCHHHHHHSTTC-------CHH
T ss_pred             HHHHHHHHHHcCchhhh--ccccHHHHHHHHHHhhcccHHHHHHHHHhhCCCCCccccchHHHHHHhhhC-------CHH
Confidence            99999999999998865  468889999999999999999999999999999999999999999877533       678


Q ss_pred             HHHHHHhhcCCchHHHHHHHHHhhhh
Q 039604          300 QMDQLCEKWRPYRSVASWYLWRFVEA  325 (373)
Q Consensus       300 e~~~l~e~w~Pyrg~a~~yLW~~~~~  325 (373)
                      +++++.+.|+||+||++||||+.++.
T Consensus       153 ~~~~~~~~~~Pyrs~a~~yLW~~~~~  178 (183)
T d1mpga1         153 QIRRYAERWKPWRSYALLHIWYTEGW  178 (183)
T ss_dssp             HHHHHHGGGTTCHHHHHHHHHTCTTC
T ss_pred             HHHHHHHhccCHHHHHHHHHHHhCCC
Confidence            99999999999999999999987553
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Back     information, alignment and structure
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]} Back     information, alignment and structure
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y88a1 a.60.4.3 (A:128-186) Hypothetical protein AF1548, C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure