Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 107
COG0179 266
COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxo
1e-34 pfam01557 207
pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA
2e-28 PRK10691 219
PRK10691, PRK10691, hypothetical protein; Provisio
3e-26 TIGR02303 245
TIGR02303, HpaG-C-term, 4-hydroxyphenylacetate deg
6e-26 PRK15203 429
PRK15203, PRK15203, 4-hydroxyphenylacetate degrada
1e-22 TIGR02305 205
TIGR02305, HpaG-N-term, 4-hydroxyphenylacetate deg
4e-18 PRK12764 500
PRK12764, PRK12764, hypothetical protein; Provisio
1e-13 PRK15203 429
PRK15203, PRK15203, 4-hydroxyphenylacetate degrada
0.004
>gnl|CDD|223257 COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
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Score = 118 bits (299), Expect = 1e-34
Identities = 45/92 (48%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 1 AKGQDTFTPISSVLPKSA-VPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIM 59
AKG DTF P+ + + DP N L L+V+ E+RQ+G+T DMIF IP LI+++S M
Sbjct: 164 AKGFDTFAPVGPWIVTKDEISDPQNLPLSLRVNGEVRQRGNTSDMIFSIPELIAYLSRFM 223
Query: 60 TLFEGDVILTGSPQGVGPVKAGQKTTAGIAGL 91
TL GDVILTG+P GVG +K G I G+
Sbjct: 224 TLEPGDVILTGTPSGVGFLKPGDVVEVEIEGI 255
>gnl|CDD|216570 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase family
Back Show alignment and domain information
Score = 101 bits (254), Expect = 2e-28
Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 1 AKGQDTFTPISSVL-PKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIM 59
AK D F P+ + + DP + EL L+V+ E+ Q GST DMIF LI+H+S +
Sbjct: 105 AKSFDGFAPLGPWIVTPDELGDPADLELRLRVNGELVQDGSTADMIFSPAELIAHLSRFL 164
Query: 60 TLFEGDVILTGSPQGVGP---VKAGQKTTAGIAGL 91
TL GD+ILTG+P G P ++ G I GL
Sbjct: 165 TLEPGDIILTGTPSGRAPALFLQPGDVVEVEIEGL 199
This family consists of fumarylacetoacetate (FAA) hydrolase, or fumarylacetoacetate hydrolase (FAH) and it also includes HHDD isomerase/OPET decarboxylase from E. coli strain W. FAA is the last enzyme in the tyrosine catabolic pathway, it hydrolyses fumarylacetoacetate into fumarate and acetoacetate which then join the citric acid cycle. Mutations in FAA cause type I tyrosinemia in humans this is an inherited disorder mainly affecting the liver leading to liver cirrhosis, hepatocellular carcinoma, renal tubular damages and neurologic crises amongst other symptoms. The enzymatic defect causes the toxic accumulation of phenylalanine/tyrosine catabolites. The E. coli W enzyme HHDD isomerase/OPET decarboxylase contains two copies of this domain and functions in fourth and fifth steps of the homoprotocatechuate pathway; here it decarboxylates OPET to HHDD and isomerises this to OHED. The final products of this pathway are pyruvic acid and succinic semialdehyde. This family also includes various hydratases and 4-oxalocrotonate decarboxylases which are involved in the bacterial meta-cleavage pathways for degradation of aromatic compounds. 2-hydroxypentadienoic acid hydratase, encoded by mhpD in E. coli, is involved in the phenylpropionic acid pathway of E. coli and catalyzes the conversion of 2-hydroxy pentadienoate to 4-hydroxy-2-keto-pentanoate and uses a Mn2+ co-factor. OHED hydratase encoded by hpcG in E. coli is involved in the homoprotocatechuic acid (HPC) catabolism. XylI in P. putida is a 4-Oxalocrotonate decarboxylase. Length = 207
>gnl|CDD|182650 PRK10691, PRK10691, hypothetical protein; Provisional
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Score = 96.3 bits (240), Expect = 3e-26
Identities = 42/91 (46%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 1 AKGQDTFTPISSVLPKSAVP-DPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIM 59
AK D PIS +P + DP N L L V+ E+RQQG+T DMI I LI+++S
Sbjct: 121 AKAFDNSCPISGFIPVAEFTGDPQNTTLGLSVNGEVRQQGNTADMIHPIVPLIAYMSRFF 180
Query: 60 TLFEGDVILTGSPQGVGPVKAGQKTTAGIAG 90
TL GDV+LTG+P+GVGP+++G + T G
Sbjct: 181 TLRAGDVVLTGTPEGVGPLQSGDELTVTFNG 211
>gnl|CDD|131356 TIGR02303, HpaG-C-term, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit
Back Show alignment and domain information
Score = 96.4 bits (240), Expect = 6e-26
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 1 AKGQDTFTPISS-VLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIM 59
K +DTFTPI ++ K V DP N L V+ E+ Q+G+T DMIF + LI ++S M
Sbjct: 144 VKNRDTFTPIGPWIVDKEDVEDPMNLWLRTYVNGELTQEGNTSDMIFSVAELIEYLSEFM 203
Query: 60 TLFEGDVILTGSPQGVGPVKAGQKTTAGIAGL 91
TL GDVILTG+P+G+ VK G I G+
Sbjct: 204 TLEPGDVILTGTPKGLSDVKPGDVVRLEIEGV 235
This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED). Length = 245
>gnl|CDD|185125 PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
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Score = 90.1 bits (223), Expect = 1e-22
Identities = 41/91 (45%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 2 KGQDTFTPISS-VLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMT 60
K +D TPI S ++PK A+PDP+N L V+ E+RQQG+T D+IF +P+LI+++S MT
Sbjct: 325 KSRDGLTPILSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMT 384
Query: 61 LFEGDVILTGSPQGVGPVKAGQKTTAGIAGL 91
L GD+I TG+P+G+ V G + + G+
Sbjct: 385 LNPGDMIATGTPKGLSDVVPGDEVVVEVEGV 415
>gnl|CDD|131358 TIGR02305, HpaG-N-term, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit
Back Show alignment and domain information
Score = 75.2 bits (185), Expect = 4e-18
Identities = 29/91 (31%), Positives = 47/91 (51%)
Query: 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMT 60
AK +D F PI +P SA+ +P ++ ++ + Q +T +++ LIS +S MT
Sbjct: 108 AKCRDGFCPIGPEVPLSAIGNPDELTIYTYINGKPAQSNNTSNLVRSAAQLISELSEFMT 167
Query: 61 LFEGDVILTGSPQGVGPVKAGQKTTAGIAGL 91
L GDV+L G+P+ V G + GL
Sbjct: 168 LNPGDVLLLGTPEARVEVGPGDRVRVEAEGL 198
This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED). Length = 205
>gnl|CDD|237193 PRK12764, PRK12764, hypothetical protein; Provisional
Back Show alignment and domain information
Score = 64.4 bits (157), Expect = 1e-13
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMT 60
+KG D FTPI L + DP + V+ E+ Q +T+D++F L++ +S ++T
Sbjct: 122 SKGGDGFTPIGPALISARGVDPAQLRVRTWVNGELVQDDTTEDLLFPFAQLVADLSQLLT 181
Query: 61 LFEGDVILTGSPQGVGPVKAG 81
L EGDVILTG+P G G
Sbjct: 182 LEEGDVILTGTPAGSSVAAPG 202
>gnl|CDD|185125 PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Back Show alignment and domain information
Score = 35.0 bits (80), Expect = 0.004
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMT 60
AK +D F PI + S V N ++ +++ +T D+ L+S +S T
Sbjct: 109 AKCRDGFCPIGETVALSNVD---NLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFAT 165
Query: 61 LFEGDVILTGSPQGVGPVKAGQK 83
L GD IL G+PQ ++ G +
Sbjct: 166 LNPGDAILLGTPQARVEIQPGDR 188
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
107
COG0179 266
MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-en
100.0 TIGR02303 245
HpaG-C-term 4-hydroxyphenylacetate degradation bif
99.97 PRK15203 429
4-hydroxyphenylacetate degradation bifunctional is
99.97 TIGR02305 205
HpaG-N-term 4-hydroxyphenylacetate degradation bif
99.96 PRK10691 219
hypothetical protein; Provisional
99.96 KOG1535 217
consensus Predicted fumarylacetoacetate hydralase
99.96 PRK12764 500
hypothetical protein; Provisional
99.96 PRK15203 429
4-hydroxyphenylacetate degradation bifunctional is
99.95 PF01557 218
FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase
99.95 PRK11342 262
mhpD 2-keto-4-pentenoate hydratase; Provisional
99.86 TIGR03220 255
catechol_dmpE 2-oxopent-4-enoate hydratase. Member
99.85 PLN02856 424
fumarylacetoacetase
99.82 TIGR01266 415
fum_ac_acetase fumarylacetoacetase. This enzyme ca
99.81 TIGR02312 267
HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. T
99.79 TIGR03218 263
catechol_dmpH 4-oxalocrotonate decarboxylase. Memb
99.74 COG3971 264
2-keto-4-pentenoate hydratase [Secondary metabolit
99.49 COG3970 379
Fumarylacetoacetate (FAA) hydrolase family protein
98.83 KOG2843 420
consensus Fumarylacetoacetase [Carbohydrate transp
97.52 PF11010 194
DUF2848: Protein of unknown function (DUF2848); In
97.01 PRK06488 65
sulfur carrier protein ThiS; Validated
89.97 PRK05659 66
sulfur carrier protein ThiS; Validated
88.6 PRK07696 67
sulfur carrier protein ThiS; Provisional
88.37 PRK07440 70
hypothetical protein; Provisional
88.08 PRK06083 84
sulfur carrier protein ThiS; Provisional
86.37 PRK08053 66
sulfur carrier protein ThiS; Provisional
86.34 PRK06944 65
sulfur carrier protein ThiS; Provisional
81.33
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
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Probab=100.00 E-value=3.9e-34 Score=210.43 Aligned_cols=101 Identities=47% Similarity=0.710 Sum_probs=96.6
Q ss_pred CCcCCCCcccCccc-cCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCeeCC
Q 039682 1 AKGQDTFTPISSVL-PKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVK 79 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i-~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l~ 79 (107)
+|+||++||+|||+ +.++..++.++++++++||+++|++++++|+|++++||+|+|+.++|+|||||+||||.|+++|+
T Consensus 164 aK~~d~~~Pigp~iv~~~e~~d~~~l~l~~~vNGe~~Q~g~t~~Mi~~i~~lI~~lS~~~tL~pGDvI~TGTP~Gvg~l~ 243 (266)
T COG0179 164 AKGFDTFAPVGPWIVTKDEISDPQNLPLSLRVNGEVRQRGNTSDMIFSIPELIAYLSRFMTLEPGDVILTGTPSGVGFLK 243 (266)
T ss_pred ccccCCCCCceeEEeccccCCCCccceEEEEECCEEEecCcHHHcccCHHHHHHHHhCCcccCCCCEEEeCCCCCcccCC
Confidence 79999999999997 56677788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECceeEEEEEEEec
Q 039682 80 AGQKTTAGIAGLLVVRFDNKKR 101 (107)
Q Consensus 80 ~Gd~v~~~i~g~G~l~~~v~~~ 101 (107)
+||+++++++|+|.++++|.+.
T Consensus 244 ~GD~v~~~iegiG~l~n~v~~~ 265 (266)
T COG0179 244 PGDVVEVEIEGIGELENTVVKE 265 (266)
T ss_pred CCCEEEEEecceeEEEEEEeeC
Confidence 9999999999999999999764
>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit
Back Show alignment and domain information
Probab=99.97 E-value=3.3e-31 Score=193.20 Aligned_cols=100 Identities=42% Similarity=0.598 Sum_probs=95.8
Q ss_pred CCcCCCCcccCcccc-CCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCeeCC
Q 039682 1 AKGQDTFTPISSVLP-KSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVK 79 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i~-~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l~ 79 (107)
+|+||+|+++|||+. ++++.|+.++.+++++||+.+|++++++|++++.+||+++|++++|+|||||+||||.++++++
T Consensus 144 aK~~D~~~plGp~i~t~~~~~d~~~l~i~l~vNGe~~q~g~t~~ml~~v~~Li~~ls~~~tL~pGDvIlTGTp~g~~~l~ 223 (245)
T TIGR02303 144 VKNRDTFTPIGPWIVDKEDVEDPMNLWLRTYVNGELTQEGNTSDMIFSVAELIEYLSEFMTLEPGDVILTGTPKGLSDVK 223 (245)
T ss_pred ccCCCCCEeeCCcCCCHHHcCCccccEEEEEECCEEEEecCHHHhccCHHHHHHHHhcCCCcCCCCEEEcCCCCCCeEcC
Confidence 699999999999974 6777789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECceeEEEEEEEe
Q 039682 80 AGQKTTAGIAGLLVVRFDNKK 100 (107)
Q Consensus 80 ~Gd~v~~~i~g~G~l~~~v~~ 100 (107)
+||+++++|+|+|+++|+|..
T Consensus 224 ~GD~v~~~i~glG~l~n~v~~ 244 (245)
T TIGR02303 224 PGDVVRLEIEGVGALENPIVS 244 (245)
T ss_pred CCCEEEEEEcCceeEEEEEEe
Confidence 999999999999999999973
This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Back Show alignment and domain information
Probab=99.97 E-value=1.8e-30 Score=201.73 Aligned_cols=98 Identities=23% Similarity=0.338 Sum_probs=93.4
Q ss_pred CCcCCCCcccCccccCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCeeCCC
Q 039682 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVKA 80 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l~~ 80 (107)
+|+||+|||+|||+.. .++.++.+++++||+++|++++++|+|++.++|+|+|++++|+|||+|+||||.|++++++
T Consensus 109 ~K~~D~~~p~Gp~i~~---~~~~~l~i~~~vNGe~~Q~~~t~~Mi~~~~~lis~lS~~~tL~pGDvI~TGTP~g~~~l~~ 185 (429)
T PRK15203 109 AKCRDGFCPIGETVAL---SNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFATLNPGDAILLGTPQARVEIQP 185 (429)
T ss_pred ccCCCCCcccCCeEEC---CCccceEEEEEECCEEEecCCHHHcCCCHHHHHHHHhCCCCcCCCCEEEcCCCCCceECCC
Confidence 6999999999999854 3578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEECceeEEEEEEEec
Q 039682 81 GQKTTAGIAGLLVVRFDNKKR 101 (107)
Q Consensus 81 Gd~v~~~i~g~G~l~~~v~~~ 101 (107)
||+++++++|+|+++|+|..+
T Consensus 186 GD~v~~~i~gig~l~n~v~~~ 206 (429)
T PRK15203 186 GDRVRVLAEGFPPLENPVVDE 206 (429)
T ss_pred CCEEEEEEeCeeEEEEEEEEc
Confidence 999999999999999999854
>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit
Back Show alignment and domain information
Probab=99.96 E-value=1.8e-29 Score=179.62 Aligned_cols=98 Identities=30% Similarity=0.451 Sum_probs=94.2
Q ss_pred CCcCCCCcccCccccCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCeeCCC
Q 039682 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVKA 80 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l~~ 80 (107)
+|+||+++++|||++.+++.|+.++.+++++||+.+|++++++|++++.++++|+|++++|+|||+|+||||++++++++
T Consensus 108 ~k~~dg~~~lGp~v~~~~~~d~~~~~~~l~vng~~~~~g~~~~~~~~~~~li~~ls~~~~L~aGdvI~TGT~~g~~~l~~ 187 (205)
T TIGR02305 108 AKCRDGFCPIGPEVPLSAIGNPDELTIYTYINGKPAQSNNTSNLVRSAAQLISELSEFMTLNPGDVLLLGTPEARVEVGP 187 (205)
T ss_pred hcccCCccccCCcccHHHcCCccccEEEEEECCEEEEeeCHHHhCcCHHHHHHHHhCCCCcCCCCEEEeCCCCCCeecCC
Confidence 59999999999998777777899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEECceeEEEEEE
Q 039682 81 GQKTTAGIAGLLVVRFDN 98 (107)
Q Consensus 81 Gd~v~~~i~g~G~l~~~v 98 (107)
||+++++|+|+|+++|+|
T Consensus 188 Gd~v~~~i~glG~l~n~v 205 (205)
T TIGR02305 188 GDRVRVEAEGLGELENPV 205 (205)
T ss_pred CCEEEEEEcCceeEEEeC
Confidence 999999999999999975
This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
>PRK10691 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.96 E-value=6.8e-29 Score=178.45 Aligned_cols=97 Identities=43% Similarity=0.634 Sum_probs=91.4
Q ss_pred CCcCCCCcccCccccCCCC-CCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCeeCC
Q 039682 1 AKGQDTFTPISSVLPKSAV-PDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVK 79 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i~~~~~-~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l~ 79 (107)
+|+||+++++|||++.++. .|+.++++++++||+.+|++++++|++++.++|+|+|++++|+|||+|+||||.++++++
T Consensus 121 ~K~~D~~~~~gp~i~~~~~~~d~~~l~i~l~vNG~~~q~g~~~~mi~~~~~lia~ls~~~tL~aGDvI~TGTp~g~~~l~ 200 (219)
T PRK10691 121 AKAFDNSCPISGFIPVAEFTGDPQNTTLGLSVNGEVRQQGNTADMIHPIVPLIAYMSRFFTLRAGDVVLTGTPEGVGPLQ 200 (219)
T ss_pred cccCCCCcCcCCcEEchhccCCccccEEEEEECCEEEEecCHHHhccCHHHHHHHHhcCCccCCCCEEEcCCCCCCEECC
Confidence 6999999999999854444 588999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECceeEEEEEE
Q 039682 80 AGQKTTAGIAGLLVVRFDN 98 (107)
Q Consensus 80 ~Gd~v~~~i~g~G~l~~~v 98 (107)
+||+++++|+|+ +++++|
T Consensus 201 ~GD~v~~~i~gl-~~~~~~ 218 (219)
T PRK10691 201 SGDELTVTFNGH-SLTTRV 218 (219)
T ss_pred CCCEEEEEEeCE-EEEEEe
Confidence 999999999999 888876
>KOG1535 consensus Predicted fumarylacetoacetate hydralase [General function prediction only]
Back Show alignment and domain information
Probab=99.96 E-value=2.6e-29 Score=176.65 Aligned_cols=100 Identities=56% Similarity=0.849 Sum_probs=97.2
Q ss_pred CCcCCCCcccCccccCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCeeCCC
Q 039682 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVKA 80 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l~~ 80 (107)
||+||+|+|+|++++.+.+.|+.++.+.+++||+.+|++++++|+|+++.+|+|+|++++|++||||+||||.|++++++
T Consensus 117 ~K~~Dtf~Pis~~vpk~~v~Dp~nl~L~l~VnG~~~Q~g~T~~mifkip~li~~is~~~tL~~GDvILTGTP~GVg~v~~ 196 (217)
T KOG1535|consen 117 GKGFDTFTPISAIVPKEKVPDPHNLWLWLRVNGETRQTGNTSLMIFKIPDLISRLSQIMTLEPGDVILTGTPEGVGEVKP 196 (217)
T ss_pred ccccCccCcccccccHHHCCCccceEEEEEEccEEEecCchhhheecHHHHHHHHhhheeecCCCEEEecCCCccccccC
Confidence 69999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEECceeEEEEEEEe
Q 039682 81 GQKTTAGIAGLLVVRFDNKK 100 (107)
Q Consensus 81 Gd~v~~~i~g~G~l~~~v~~ 100 (107)
||.+++++.+++.+.|.|.+
T Consensus 197 Gd~i~~ei~~l~~~~f~V~~ 216 (217)
T KOG1535|consen 197 GDVIQCELLELSDVCFKVEA 216 (217)
T ss_pred CCEEEeccccccceeEEEec
Confidence 99999999999999998875
>PRK12764 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.96 E-value=1.5e-28 Score=193.95 Aligned_cols=103 Identities=32% Similarity=0.509 Sum_probs=97.5
Q ss_pred CCcCCCCcccCccc-cCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCeeCC
Q 039682 1 AKGQDTFTPISSVL-PKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVK 79 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i-~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l~ 79 (107)
+|+||+++++|||+ +.+++ |+.++++++++||+++|++++++|+|++.+||+++|++++|+|||||+||||.|+++++
T Consensus 122 ~K~~Dg~~plGp~iv~~~~~-d~~~l~i~~~vNGe~~Q~g~t~dmi~~v~~LI~~lS~~~tL~pGDvIlTGTp~g~~~l~ 200 (500)
T PRK12764 122 SKGGDGFTPIGPALISARGV-DPAQLRVRTWVNGELVQDDTTEDLLFPFAQLVADLSQLLTLEEGDVILTGTPAGSSVAA 200 (500)
T ss_pred ccccCccEecCCCccCcccc-CccceEEEEEECCEEEEeccHHHhcCCHHHHHHHHhcCCCcCCCCEEEeCCCCCCeecC
Confidence 69999999999996 55665 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECce-------eEEEEEEEeccCC
Q 039682 80 AGQKTTAGIAGL-------LVVRFDNKKRRRP 104 (107)
Q Consensus 80 ~Gd~v~~~i~g~-------G~l~~~v~~~~~~ 104 (107)
+||+|+++|+|+ |+|.|+|..+.+|
T Consensus 201 pGD~v~~~i~gi~~~~~~~G~L~n~v~~~~~~ 232 (500)
T PRK12764 201 PGDVVEVEVDAPADGAPSTGRLVTRVVEGTTP 232 (500)
T ss_pred CCCEEEEEEcCCccCCCCcceEEEEEEeCCCC
Confidence 999999999999 9999999877655
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Back Show alignment and domain information
Probab=99.95 E-value=4.1e-28 Score=188.52 Aligned_cols=102 Identities=40% Similarity=0.663 Sum_probs=96.9
Q ss_pred CCcCCCCcccCccc-cCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCeeCC
Q 039682 1 AKGQDTFTPISSVL-PKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVK 79 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i-~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l~ 79 (107)
+|+||+++++|||+ +.+++.++.++.+++++||+.+|++++++|++++.++|+|+|++++|+|||+|+||||.|+++++
T Consensus 324 ~K~~d~~~plGp~~v~~d~~~d~~~l~i~l~vNG~~vq~g~t~~m~~~v~~li~~ls~~~tL~aGDvI~TGTp~g~~~l~ 403 (429)
T PRK15203 324 VKSRDGLTPILSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIATGTPKGLSDVV 403 (429)
T ss_pred eccCCCCcCCCCCEeChhhcCCccceEEEEEECCEEEEeeCHHHhccCHHHHHHHHhcCCCcCCCCEEEeCCCCCCeECC
Confidence 69999999999986 66767789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECceeEEEEEEEecc
Q 039682 80 AGQKTTAGIAGLLVVRFDNKKRR 102 (107)
Q Consensus 80 ~Gd~v~~~i~g~G~l~~~v~~~~ 102 (107)
+||+++++|+|+|+++|+|..++
T Consensus 404 pGD~v~~~i~glG~l~n~v~~~~ 426 (429)
T PRK15203 404 PGDEVVVEVEGVGRLVNRIVSEE 426 (429)
T ss_pred CCCEEEEEEcCceEEEEEEEecC
Confidence 99999999999999999997543
>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I
Back Show alignment and domain information
Probab=99.95 E-value=3.5e-28 Score=173.75 Aligned_cols=99 Identities=36% Similarity=0.532 Sum_probs=90.4
Q ss_pred CCcCCCCcccCccc-cCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCe---
Q 039682 1 AKGQDTFTPISSVL-PKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVG--- 76 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i-~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~--- 76 (107)
+|+||+++++||++ +++++.++.++++++++||+.+|++++++|+++|.++|+|+|++.+|+|||+|+||||+|+.
T Consensus 112 ~k~~~~~~~~Gp~~v~~~~~~~~~~~~~~l~vnG~~~~~~~~~~~~~~~~~ll~~ls~~~~L~aGdvI~TGt~~G~~~~~ 191 (218)
T PF01557_consen 112 DKSFDGSLVLGPWVVPPDELPDLRDLRLRLRVNGEVVQSGSTSDMLGDPAELLAWLSRGLTLRAGDVILTGTPTGVGARP 191 (218)
T ss_dssp HHSSTTCEEEEEEEEEHSSHSGTTSEEEEEEETTEEEEEEEGGGBSSSHHHHHHHHHTTS-B-TTEEEEEEESSTSEGSS
T ss_pred ccCcCcceeecccccccccccCcceEEEEEEECCEEEEeccchhHHhhHHHHHHHHhCCCCCCcceEEEcCCcCCCCccc
Confidence 48999999999997 77777778999999999999999999999999999999999999999999999999998754
Q ss_pred ---eCCCCCEEEEEE-CceeEEEEEEE
Q 039682 77 ---PVKAGQKTTAGI-AGLLVVRFDNK 99 (107)
Q Consensus 77 ---~l~~Gd~v~~~i-~g~G~l~~~v~ 99 (107)
++++||+|++++ +|+|+++++|+
T Consensus 192 ~~~~l~~Gd~v~~~~~~glG~l~~~v~ 218 (218)
T PF01557_consen 192 PPVPLQPGDRVEAEIDEGLGSLENTVA 218 (218)
T ss_dssp CCEEEBTT-EEEEEEETTTEEEEEEEE
T ss_pred ccccCCCCcEEEEEEECCEeEEEEEEC
Confidence 899999999999 99999999985
; InterPro: IPR002529 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the C-terminal domain of fumarylacetoacetase, as well as other domains that share a homologous sequence, including: 5-carboxymethyl-2-hydroxymuconate delta-isomerase (CHM isomerase; 5.3.3.10 from EC), which catalyses the conversion of 5-carboxymethyl-2-hydroxymuconate to 5-carboxy-2-oxohept-3-enedioate []. 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (OPET decarboxylase; 4.1.1.68 from EC), which catalyses the conversion of 5-oxopent-3-ene-1,2,5-tricarboxylate to 2-oxohept-3-enedioate and carbon dioxide. Bifunctional enzyme HpcE (OPET decarboxylase 4.1.1.68 from EC/HHDD isomerase 5.3.3.10 from EC), which is a duplication consisting of a tandem repeat of two FAH C-terminal-like domains. This enzyme is responsible for the degradation of 4-hydroxyphenylacetate, a product of tyrosine and phenylalanine metabolism also released by lignin catabolism []. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1SAW_B 3LZK_B 3S52_B 2WQT_Q 1SV6_C 2DFU_B 1WZO_D 3QDF_A 1GTT_B 1I7O_C ....
>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional
Back Show alignment and domain information
Probab=99.86 E-value=2.2e-21 Score=142.60 Aligned_cols=93 Identities=20% Similarity=0.166 Sum_probs=83.4
Q ss_pred CCcccCcccc-CCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHc-----CCccCCCCEEecCCCCCCeeCC
Q 039682 6 TFTPISSVLP-KSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISS-----IMTLFEGDVILTGSPQGVGPVK 79 (107)
Q Consensus 6 ~~~~~Gp~i~-~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~-----~~~L~~GdvI~TGt~~g~~~l~ 79 (107)
+..++|+.+. ++.+ |+.++.+++++||+.+|++++++|+++|.++|.|+++ +++|+|||+|+||||+++.+++
T Consensus 162 ~~~VlG~~~~~~~~~-d~~~~~~~l~vng~~~q~g~~~~~lg~p~~~l~~L~~~l~~~g~~L~aGdvV~TGt~~~~~~l~ 240 (262)
T PRK11342 162 GVYVIGGPAQRPAGL-DLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAVWLARKMASLGEPLRAGDIILTGALGPMVAVN 240 (262)
T ss_pred ceEEECCCcCCcccC-ChhhCEEEEEECCEEEEEEcHHHhccCHHHHHHHHHHHHHHcCCCcCCCCEEEcCCCCCCeeCC
Confidence 3457888754 3433 7889999999999999999999999999999999975 5799999999999999999999
Q ss_pred CCCEEEEEECceeEEEEEEE
Q 039682 80 AGQKTTAGIAGLLVVRFDNK 99 (107)
Q Consensus 80 ~Gd~v~~~i~g~G~l~~~v~ 99 (107)
+||+++++|+|+|++++++.
T Consensus 241 ~Gd~v~~~i~glG~v~~~~~ 260 (262)
T PRK11342 241 AGDRFEAHIEGIGSVAATFS 260 (262)
T ss_pred CCCEEEEEECCCceEEEEEe
Confidence 99999999999999999885
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase
Back Show alignment and domain information
Probab=99.85 E-value=4.3e-21 Score=140.63 Aligned_cols=91 Identities=21% Similarity=0.213 Sum_probs=78.5
Q ss_pred cccCccccCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHc-----CCccCCCCEEecCCCCCCeeCCCCC
Q 039682 8 TPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISS-----IMTLFEGDVILTGSPQGVGPVKAGQ 82 (107)
Q Consensus 8 ~~~Gp~i~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~-----~~~L~~GdvI~TGt~~g~~~l~~Gd 82 (107)
.++|+.+....-.++..+.+++++||+.+|++++++|+++|.++|.|+++ +++|+|||+|+||||++++++++||
T Consensus 160 ~V~g~~~~~~~~~~l~~~~~~l~vnG~~~~~g~~~~~lg~p~~~l~~L~~~l~~~g~~L~aGdiV~TGt~~g~~~v~~Gd 239 (255)
T TIGR03220 160 FVLGDTRVDPRKLDLALCGMVLEKNGEIVSTGAGAAALGSPVNAVAWLANTLGRLGIPLKAGEVILSGSLAALVPVKAGD 239 (255)
T ss_pred EEECCCcCCccccChhhCceEEEECCEEEeecchhhccCCHHHHHHHHHHHHHHcCCCCCCCCEEECCCCCCCeeCCCCC
Confidence 45566543221225667778999999999999999999999999999985 8999999999999999999999999
Q ss_pred EEEEEECceeEEEEEE
Q 039682 83 KTTAGIAGLLVVRFDN 98 (107)
Q Consensus 83 ~v~~~i~g~G~l~~~v 98 (107)
+++++|+|+|++++++
T Consensus 240 ~v~~~~~glG~v~~~~ 255 (255)
T TIGR03220 240 NLRVSIGGIGSCSVRF 255 (255)
T ss_pred EEEEEEcCCceEEEeC
Confidence 9999999999998864
Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
>PLN02856 fumarylacetoacetase
Back Show alignment and domain information
Probab=99.82 E-value=6.6e-20 Score=142.00 Aligned_cols=94 Identities=20% Similarity=0.251 Sum_probs=78.3
Q ss_pred CCcCCCCcccCccc-cCCCCC--------------------CCcceEEEEEE--------CCEEEEeeccchhccCHHHH
Q 039682 1 AKGQDTFTPISSVL-PKSAVP--------------------DPYNFELWLKV--------DREIRQQGSTKDMIFKIPYL 51 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i-~~~~~~--------------------~~~~~~~~l~v--------nG~~~~~~~~~~m~~~~~~l 51 (107)
+|+||++ +|||+ +.+++. +..++.+++++ ||+++|++++++|+|++.++
T Consensus 259 gKsF~t~--igPwIVt~dal~p~r~~~~~~dp~~l~yl~~~~~~~~~i~l~v~v~~nG~~ng~~~q~~nt~~M~ws~~ql 336 (424)
T PLN02856 259 GKSFATT--ISPWIVTLDALEPFRCDAPAQDPPPLPYLAEKNRKSYDISLEVAIKPAGQSKASVVCRSNFKHLYWTLAQQ 336 (424)
T ss_pred ccCCCCC--CcCeEEcccccccccccccccCcccccccccccccceeEEEEEEEeeCCcccceeEEcCCHHHcCCCHHHH
Confidence 6999876 99997 556552 11245555555 56899999999999999999
Q ss_pred HHH-HHcCCccCCCCEEecCCCCCCeeCCCCCEEEEEECceeEEEE
Q 039682 52 ISH-ISSIMTLFEGDVILTGSPQGVGPVKAGQKTTAGIAGLLVVRF 96 (107)
Q Consensus 52 i~~-ls~~~~L~~GdvI~TGt~~g~~~l~~Gd~v~~~i~g~G~l~~ 96 (107)
|+| +|++++|+|||+|+||||.|+.+++.|+.+|++++|...+++
T Consensus 337 Iah~~s~g~tL~pGDLi~TGTpsG~~~~~~G~llElt~~G~~p~~l 382 (424)
T PLN02856 337 LAHHTVNGCNLRPGDLLGSGTISGPEPGSLGCLLELTWAGSREVSL 382 (424)
T ss_pred HHHHHhCCeecCCCCEEEeCCCCCCccCCCCCEEEEEeCCccceEe
Confidence 996 589999999999999999999999999999999988776653
>TIGR01266 fum_ac_acetase fumarylacetoacetase
Back Show alignment and domain information
Probab=99.81 E-value=1e-19 Score=140.77 Aligned_cols=93 Identities=24% Similarity=0.292 Sum_probs=80.4
Q ss_pred CCcCCCCcccCccc-cCCCCCC---------C-------------cceEEEEEECCE------EEEeeccchhccCHHHH
Q 039682 1 AKGQDTFTPISSVL-PKSAVPD---------P-------------YNFELWLKVDRE------IRQQGSTKDMIFKIPYL 51 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i-~~~~~~~---------~-------------~~~~~~l~vnG~------~~~~~~~~~m~~~~~~l 51 (107)
+|+||++ +|||+ +.+++.+ + .++.+++++||+ .+|++++++|+|++.++
T Consensus 251 ~KsF~ts--igPwIVT~daL~p~r~~~~~~dp~pl~yL~~~~~~~~~l~l~v~vnge~~~~~~~~q~~~~~~M~ws~~ql 328 (415)
T TIGR01266 251 AKSFGTT--ISPWVVPIDALEPFRVPNPKQDPKPLPYLCHDAPYTFDINLEVSLKGEGMSEPATICRSNFKHMYWTMLQQ 328 (415)
T ss_pred cccCCCC--CcCeEeccccccccccccccccccccccccccCCCcceeEEEEEEecCcCcccceEEcCCHHhcCcCHHHH
Confidence 6999997 99997 5665421 1 267888899987 79999999999999999
Q ss_pred HHHHH-cCCccCCCCEEecCCCCCCeeCCCCCEEEEEECceeEEE
Q 039682 52 ISHIS-SIMTLFEGDVILTGSPQGVGPVKAGQKTTAGIAGLLVVR 95 (107)
Q Consensus 52 i~~ls-~~~~L~~GdvI~TGt~~g~~~l~~Gd~v~~~i~g~G~l~ 95 (107)
|+|+| ++++|+|||+|+||||.|+.+.+.|+.+++++.|...++
T Consensus 329 Iah~S~~g~tL~pGDLi~TGTpsG~~~~~~G~~lE~t~~g~~~v~ 373 (415)
T TIGR01266 329 LAHHSVNGCNLRPGDLLGSGTISGSEPGSFGSMLELSWKGKKPID 373 (415)
T ss_pred HHHHhcCCcccCCCCEEEeCCCCCCcccCCCcEEEEEeCCeeeee
Confidence 99999 799999999999999999999999999999998865543
This enzyme catalyzes the final step in the breakdown of tyrosine or phenylalanine to fumarate and acetoacetate.
>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase
Back Show alignment and domain information
Probab=99.79 E-value=1.1e-18 Score=128.75 Aligned_cols=91 Identities=15% Similarity=0.053 Sum_probs=81.3
Q ss_pred CcccCccc-cCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHH-----cCCccCCCCEEecCCCCCCeeCCC
Q 039682 7 FTPISSVL-PKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHIS-----SIMTLFEGDVILTGSPQGVGPVKA 80 (107)
Q Consensus 7 ~~~~Gp~i-~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls-----~~~~L~~GdvI~TGt~~g~~~l~~ 80 (107)
..++|+.. .++. .|+.++.+++.+||+.+++|.+++|+++|...|.||+ ++.+|+|||+|+|||++++.++++
T Consensus 170 ~~v~G~~~~~~~~-~dl~~~~~~l~~nG~~~~~g~~~~~lg~P~~al~wL~~~l~~~G~~L~aGdiV~TGs~~~~~~v~~ 248 (267)
T TIGR02312 170 GIVLGGRPVRPDA-LDLRWVGAILYRNGVVEETGLAAGVLNHPANGVAWLANKLAPWGETLEAGQVVLAGSFTRPVAARS 248 (267)
T ss_pred EEEECCCCCCccc-cChhhcccEEEECCEEEEEechhhhcCCHHHHHHHHHHHHHHcCCCCCCCCEEECCCCCCceecCC
Confidence 35888864 3443 4788889999999999999999999999998888886 577999999999999999999999
Q ss_pred CCEEEEEECceeEEEEEE
Q 039682 81 GQKTTAGIAGLLVVRFDN 98 (107)
Q Consensus 81 Gd~v~~~i~g~G~l~~~v 98 (107)
||+++++|+|+|++++++
T Consensus 249 G~~~~~~~~glG~v~~~f 266 (267)
T TIGR02312 249 GDTFHADYGPLGTISVRF 266 (267)
T ss_pred CCEEEEEEcCCceEEEEE
Confidence 999999999999999876
This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.
>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase
Back Show alignment and domain information
Probab=99.74 E-value=2.6e-17 Score=121.19 Aligned_cols=93 Identities=13% Similarity=0.100 Sum_probs=82.8
Q ss_pred CCcccCccccCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHH-----cCCccCCCCEEecCCCCCCeeCCC
Q 039682 6 TFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHIS-----SIMTLFEGDVILTGSPQGVGPVKA 80 (107)
Q Consensus 6 ~~~~~Gp~i~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls-----~~~~L~~GdvI~TGt~~g~~~l~~ 80 (107)
+..++||.....+..|+.++.+++++||+.++++.+++.+++|...+.||. ++..|++||+|+|||++++.++++
T Consensus 166 ~~~vlG~~~~~~~~~dl~~~~~~l~~~g~~v~~g~g~~~lG~P~~al~wL~~~l~~~G~~L~aG~iV~tGs~t~~~~v~~ 245 (263)
T TIGR03218 166 ARFVTGGRAANVEDLDLRTLGVVMEKNGEVVAMGAGAAVLGHPAAAVAMLANHLAERGEEIPAGSFIMSGGITEAVAVAP 245 (263)
T ss_pred ceEEECCCCCCccccCHhhCcEEEEECCEEEEeecccccCCCHHHHHHHHHHHHHHcCCCCCCCCEEECCcCcCceecCC
Confidence 455889986544345889999999999999999999999999998888885 588999999999999999999999
Q ss_pred CCEEEEEECceeEEEEEE
Q 039682 81 GQKTTAGIAGLLVVRFDN 98 (107)
Q Consensus 81 Gd~v~~~i~g~G~l~~~v 98 (107)
|++++++|+|+|++++++
T Consensus 246 G~~~~~~~~glG~v~~~f 263 (263)
T TIGR03218 246 GDSVTVRYQGLGSVSMRF 263 (263)
T ss_pred CCEEEEEECCCceEEEeC
Confidence 999999999999998864
Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc.
>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]
Back Show alignment and domain information
Probab=99.49 E-value=1.5e-13 Score=100.33 Aligned_cols=92 Identities=22% Similarity=0.199 Sum_probs=83.2
Q ss_pred cccCcc-ccCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHH-----cCCccCCCCEEecCCCCCCeeCCCC
Q 039682 8 TPISSV-LPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHIS-----SIMTLFEGDVILTGSPQGVGPVKAG 81 (107)
Q Consensus 8 ~~~Gp~-i~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls-----~~~~L~~GdvI~TGt~~g~~~l~~G 81 (107)
.++|+- +.++.+ |+.....++++||+.+..+..+..+.+|..-+.|++ ++.+|++||||+||+.+++.+.++|
T Consensus 166 ~ViG~~~~~~~~l-d~~~~~~~l~rng~~~e~g~~aavLghP~~a~~wLAn~~a~~G~~Lk~G~IVl~Gs~t~~v~~~~g 244 (264)
T COG3971 166 FVIGGRAVKPDDL-DLRNVGATLYRNGVEEETGVGAAVLGHPAAALAWLANKLAAYGVPLKAGDIVLTGSFTGPVPARPG 244 (264)
T ss_pred eEECCCCCCchhh-hhhhccceeeecCEEEEeeechhhcCCcHHHHHHHHHHHHHcCCCcccCcEEecCccCccccCCCC
Confidence 477865 455554 889999999999999999999999999999999996 6899999999999999999999999
Q ss_pred CEEEEEECceeEEEEEEEe
Q 039682 82 QKTTAGIAGLLVVRFDNKK 100 (107)
Q Consensus 82 d~v~~~i~g~G~l~~~v~~ 100 (107)
|+++++|.++|.+++++..
T Consensus 245 d~~h~~~~~lG~v~~~f~~ 263 (264)
T COG3971 245 DTFHADFGGLGAVSCVFVK 263 (264)
T ss_pred CEEEEEecCcCceEEeecC
Confidence 9999999999999998753
>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]
Back Show alignment and domain information
Probab=98.83 E-value=1.9e-08 Score=75.43 Aligned_cols=102 Identities=14% Similarity=0.056 Sum_probs=80.5
Q ss_pred CCcCCCCcccCccc-cCCCCCCCcceE---EEEEECCE--EEEee--ccchhccCHHHHHHHHH-cCCccCCCCEEecCC
Q 039682 1 AKGQDTFTPISSVL-PKSAVPDPYNFE---LWLKVDRE--IRQQG--STKDMIFKIPYLISHIS-SIMTLFEGDVILTGS 71 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i-~~~~~~~~~~~~---~~l~vnG~--~~~~~--~~~~m~~~~~~li~~ls-~~~~L~~GdvI~TGt 71 (107)
||-...+|++|||+ ..|+...+.+++ ++|.|.|+ ..-+| +.+.|..+|.+++.++. +......|-++++||
T Consensus 237 aKdnnasCaiGPfIrlfDe~f~~~dv~~a~vtLkv~gedgf~l~G~snm~~isR~p~~l~~Q~l~~~hqyPDG~~lflGT 316 (379)
T COG3970 237 AKDNNASCAIGPFIRLFDETFTIDDVKSAEVTLKVTGEDGFFLEGSSNMAEISRSPEELVIQALNRDHQYPDGFALFLGT 316 (379)
T ss_pred ccccCccccccceEEeecCCCChhhhhhceEEEEEEccCceEEeccccHHhhccCHHHHHHHHhccCCCCCCceeEEeee
Confidence 57778899999997 466555555444 99999887 34444 46789999999888665 788899999999999
Q ss_pred CCCCe---------e-CCCCCEEEEEECceeEEEEEEEecc
Q 039682 72 PQGVG---------P-VKAGQKTTAGIAGLLVVRFDNKKRR 102 (107)
Q Consensus 72 ~~g~~---------~-l~~Gd~v~~~i~g~G~l~~~v~~~~ 102 (107)
....+ + =+.||+||++...+|++.|.|+..+
T Consensus 317 mfaP~kDr~~~g~gfth~~gD~VeIStp~lG~Lin~V~~~d 357 (379)
T COG3970 317 MFAPGKDRGLKGLGFTHEVGDIVEISTPKLGTLINPVTTSD 357 (379)
T ss_pred eeccccccCCCCCCcccCCCCEEEEeccccceeeeeeeccC
Confidence 75333 1 3789999999999999999998754
>KOG2843 consensus Fumarylacetoacetase [Carbohydrate transport and metabolism]
Back Show alignment and domain information
Probab=97.52 E-value=9.3e-05 Score=55.63 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=49.5
Q ss_pred EEEEeeccchhccCHHHHHHHHH-cCCccCCCCEEecCCCCCCeeCCCCCEEEEEECceeEEE
Q 039682 34 EIRQQGSTKDMIFKIPYLISHIS-SIMTLFEGDVILTGSPQGVGPVKAGQKTTAGIAGLLVVR 95 (107)
Q Consensus 34 ~~~~~~~~~~m~~~~~~li~~ls-~~~~L~~GdvI~TGt~~g~~~l~~Gd~v~~~i~g~G~l~ 95 (107)
..+++.+...|.|.+.+-++|.+ .++.|+|||++.+||..|..+=.-|..+|..+.|-.+++
T Consensus 313 a~icKsNFKhlYWT~lQQlaHHtVnGCNLRpGDLlaSGTiSGpep~~yGSmLELsWkGtK~~~ 375 (420)
T KOG2843|consen 313 ALICKSNFKHLYWTPLQQLAHHTVNGCNLRPGDLLASGTISGPEPDSYGSMLELSWKGTKTLE 375 (420)
T ss_pred ceeecccchhhhhhHHHHhhhcccccccCCccceeccccccCCCCcchhhhhhhhhcCceeee
Confidence 36788889999999999999887 899999999999999998887555555555555544443
>PF11010 DUF2848: Protein of unknown function (DUF2848); InterPro: IPR021269 This bacterial family of proteins has no known function
Back Show alignment and domain information
Probab=97.01 E-value=0.0026 Score=45.25 Aligned_cols=81 Identities=17% Similarity=0.268 Sum_probs=62.5
Q ss_pred ccCcc-ccCCCC-CCCcceEEEEE--ECCE--EEEeeccchhccCHHHHHHHHH-cCCccCCCCEEecCCCCCCeeCCCC
Q 039682 9 PISSV-LPKSAV-PDPYNFELWLK--VDRE--IRQQGSTKDMIFKIPYLISHIS-SIMTLFEGDVILTGSPQGVGPVKAG 81 (107)
Q Consensus 9 ~~Gp~-i~~~~~-~~~~~~~~~l~--vnG~--~~~~~~~~~m~~~~~~li~~ls-~~~~L~~GdvI~TGt~~g~~~l~~G 81 (107)
|+++- +..+++ +.+..+.++.+ .||+ +.|+|+.+.| ..|.+|++.+. ....+.+|-++++||..-.+.++++
T Consensus 96 pva~~~W~~~dV~dhWD~l~Lrsw~~~dg~~~lYQeGtla~l-l~p~~ll~~~~~~~~~~~~g~~m~~GT~~~~g~~~~a 174 (194)
T PF11010_consen 96 PVAREAWRLDDVADHWDELELRSWITEDGERVLYQEGTLAAL-LPPADLLERLGEGRGDLPEGTAMFCGTVPAIGGIRPA 174 (194)
T ss_pred cchhhcCcHHHHHhhhhheeEEEEEeeCCCEEEEeecchhhc-CCHHHHHHhhhccCCCCCCCEEEEEeccccccCcccc
Confidence 55553 233332 24667777765 4554 8999999865 57999999998 6778999999999999888999999
Q ss_pred CEEEEEECc
Q 039682 82 QKTTAGIAG 90 (107)
Q Consensus 82 d~v~~~i~g 90 (107)
++.++++.+
T Consensus 175 ~~f~~eL~D 183 (194)
T PF11010_consen 175 DRFEMELED 183 (194)
T ss_pred ceEEEEEEc
Confidence 999999864
>PRK06488 sulfur carrier protein ThiS; Validated
Back Show alignment and domain information
Probab=89.97 E-value=0.73 Score=26.60 Aligned_cols=55 Identities=11% Similarity=0.166 Sum_probs=30.6
Q ss_pred EEEEECCEEEEeeccchhccCHHHHHHHHH---cCCccCCCCEEecCCCCCCeeCCCCCEEEE
Q 039682 27 LWLKVDREIRQQGSTKDMIFKIPYLISHIS---SIMTLFEGDVILTGSPQGVGPVKAGQKTTA 86 (107)
Q Consensus 27 ~~l~vnG~~~~~~~~~~m~~~~~~li~~ls---~~~~L~~GdvI~TGt~~g~~~l~~Gd~v~~ 86 (107)
|++++||+.++- ..+ ++.+|++++. +...+.--+-|..-+--.-.+++.||+|++
T Consensus 1 m~i~~Ng~~~~~---~~~--tl~~Ll~~l~~~~~~vavavN~~iv~~~~~~~~~L~dgD~Iei 58 (65)
T PRK06488 1 MKLFVNGETLQT---EAT--TLALLLAELDYEGNWLATAVNGELVHKEARAQFVLHEGDRIEI 58 (65)
T ss_pred CEEEECCeEEEc---CcC--cHHHHHHHcCCCCCeEEEEECCEEcCHHHcCccccCCCCEEEE
Confidence 478999998886 222 7888888773 111112111122211001235899999886
>PRK05659 sulfur carrier protein ThiS; Validated
Back Show alignment and domain information
Probab=88.60 E-value=1.1 Score=25.79 Aligned_cols=55 Identities=11% Similarity=0.201 Sum_probs=30.1
Q ss_pred EEEEECCEEEEeeccchhccCHHHHHHHHH---cCCccCC-CCEEecCCCCCCeeCCCCCEEEE
Q 039682 27 LWLKVDREIRQQGSTKDMIFKIPYLISHIS---SIMTLFE-GDVILTGSPQGVGPVKAGQKTTA 86 (107)
Q Consensus 27 ~~l~vnG~~~~~~~~~~m~~~~~~li~~ls---~~~~L~~-GdvI~TGt~~g~~~l~~Gd~v~~ 86 (107)
+++++||+.+.-... -++.+++..+. +...+.- |.+|- =.-..-..++.||+|++
T Consensus 1 m~i~vNG~~~~~~~~----~tl~~lL~~l~~~~~~vav~vNg~iv~-r~~~~~~~l~~gD~vei 59 (66)
T PRK05659 1 MNIQLNGEPRELPDG----ESVAALLAREGLAGRRVAVEVNGEIVP-RSQHASTALREGDVVEI 59 (66)
T ss_pred CEEEECCeEEEcCCC----CCHHHHHHhcCCCCCeEEEEECCeEeC-HHHcCcccCCCCCEEEE
Confidence 468999997754321 25777777663 1222211 22222 11113336999999986
>PRK07696 sulfur carrier protein ThiS; Provisional
Back Show alignment and domain information
Probab=88.37 E-value=1.2 Score=26.17 Aligned_cols=57 Identities=16% Similarity=0.224 Sum_probs=33.1
Q ss_pred EEEEECCEEEEeeccchhccCHHHHHHHHH---cCCccCCCCEEecCCCCCCeeCCCCCEEEE
Q 039682 27 LWLKVDREIRQQGSTKDMIFKIPYLISHIS---SIMTLFEGDVILTGSPQGVGPVKAGQKTTA 86 (107)
Q Consensus 27 ~~l~vnG~~~~~~~~~~m~~~~~~li~~ls---~~~~L~~GdvI~TGt~~g~~~l~~Gd~v~~ 86 (107)
|++++||+.+.-... .-++.++++++. +...+.--.-|..-.--.-..++.||++++
T Consensus 1 m~I~vNG~~~~~~~~---~~tv~~lL~~l~~~~~~vav~vN~~iv~r~~w~~~~L~~gD~iEI 60 (67)
T PRK07696 1 MNLKINGNQIEVPES---VKTVAELLTHLELDNKIVVVERNKDILQKDDHTDTSVFDGDQIEI 60 (67)
T ss_pred CEEEECCEEEEcCCC---cccHHHHHHHcCCCCCeEEEEECCEEeCHHHcCceecCCCCEEEE
Confidence 468999997643221 134777777663 333344333344433333446899999986
>PRK07440 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=88.08 E-value=1.8 Score=25.62 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=35.1
Q ss_pred EEEEEECCEEEEeeccchhccCHHHHHHHHH---cCCccCCCCEEecCCCCCCeeCCCCCEEEE
Q 039682 26 ELWLKVDREIRQQGSTKDMIFKIPYLISHIS---SIMTLFEGDVILTGSPQGVGPVKAGQKTTA 86 (107)
Q Consensus 26 ~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls---~~~~L~~GdvI~TGt~~g~~~l~~Gd~v~~ 86 (107)
.+.+++||+.+.-... -++.+|+..+. ++..+.--.-|..-+--.-..++.||+|++
T Consensus 4 ~m~i~vNG~~~~~~~~----~tl~~lL~~l~~~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEI 63 (70)
T PRK07440 4 PITLQVNGETRTCSSG----TSLPDLLQQLGFNPRLVAVEYNGEILHRQFWEQTQVQPGDRLEI 63 (70)
T ss_pred ceEEEECCEEEEcCCC----CCHHHHHHHcCCCCCeEEEEECCEEeCHHHcCceecCCCCEEEE
Confidence 5899999997664321 34677777653 344444444444433223346999999986
>PRK06083 sulfur carrier protein ThiS; Provisional
Back Show alignment and domain information
Probab=86.37 E-value=2.3 Score=26.26 Aligned_cols=62 Identities=8% Similarity=0.058 Sum_probs=35.6
Q ss_pred CCcceEEEEEECCEEEEeeccchhccCHHHHHHHHH---cCCccCCCCEEecCCCCCCeeCCCCCEEEE
Q 039682 21 DPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHIS---SIMTLFEGDVILTGSPQGVGPVKAGQKTTA 86 (107)
Q Consensus 21 ~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls---~~~~L~~GdvI~TGt~~g~~~l~~Gd~v~~ 86 (107)
......+.+++||+...-... -++.+||+++. +...+.--.-|..-.--.-..|+.||++++
T Consensus 13 ~~~~~~m~I~VNG~~~~~~~~----~tl~~LL~~l~~~~~~vAVevNg~iVpr~~w~~t~L~egD~IEI 77 (84)
T PRK06083 13 GAAMVLITISINDQSIQVDIS----SSLAQIIAQLSLPELGCVFAINNQVVPRSEWQSTVLSSGDAISL 77 (84)
T ss_pred CCCCceEEEEECCeEEEcCCC----CcHHHHHHHcCCCCceEEEEECCEEeCHHHcCcccCCCCCEEEE
Confidence 446678999999998775432 24778888763 122222111122211112335899999986
>PRK08053 sulfur carrier protein ThiS; Provisional
Back Show alignment and domain information
Probab=86.34 E-value=2.1 Score=24.81 Aligned_cols=56 Identities=11% Similarity=0.079 Sum_probs=31.7
Q ss_pred EEEEECCEEEEeeccchhccCHHHHHHHHHc---CCccCCCCEEecCCCCCCeeCCCCCEEEE
Q 039682 27 LWLKVDREIRQQGSTKDMIFKIPYLISHISS---IMTLFEGDVILTGSPQGVGPVKAGQKTTA 86 (107)
Q Consensus 27 ~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~---~~~L~~GdvI~TGt~~g~~~l~~Gd~v~~ 86 (107)
|.+++||+.+.-... -++.+|+.++.. .+.+.--+-|..-.--.-..+++||+|++
T Consensus 1 m~i~vNg~~~~~~~~----~tl~~ll~~l~~~~~~vaVavN~~iv~r~~w~~~~L~~gD~Iei 59 (66)
T PRK08053 1 MQILFNDQPMQCAAG----QTVHELLEQLNQLQPGAALAINQQIIPREQWAQHIVQDGDQILL 59 (66)
T ss_pred CEEEECCeEEEcCCC----CCHHHHHHHcCCCCCcEEEEECCEEeChHHcCccccCCCCEEEE
Confidence 468899998875332 247788877642 23333333333322112225889998875
>PRK06944 sulfur carrier protein ThiS; Provisional
Back Show alignment and domain information
Probab=81.33 E-value=5.9 Score=22.49 Aligned_cols=52 Identities=6% Similarity=0.064 Sum_probs=28.2
Q ss_pred EEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCE-EecCCCCC-----CeeCCCCCEEEE
Q 039682 27 LWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDV-ILTGSPQG-----VGPVKAGQKTTA 86 (107)
Q Consensus 27 ~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~Gdv-I~TGt~~g-----~~~l~~Gd~v~~ 86 (107)
|++++||+.+.-... -++.++++++... ++=. -.=|.... -..++.||+|++
T Consensus 1 m~i~vNg~~~~~~~~----~tl~~ll~~l~~~----~~~~v~vN~~~v~~~~~~~~~L~~gD~vei 58 (65)
T PRK06944 1 MDIQLNQQTLSLPDG----ATVADALAAYGAR----PPFAVAVNGDFVARTQHAARALAAGDRLDL 58 (65)
T ss_pred CEEEECCEEEECCCC----CcHHHHHHhhCCC----CCeEEEECCEEcCchhcccccCCCCCEEEE
Confidence 468999998764332 2467777766421 1111 11121111 124899999886
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 107
d1sawa_ 217
d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Hom
1e-30 d1gtta2 216
d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degra
4e-23 d1nkqa_ 257
d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker
2e-22 d1nr9a_ 221
d.177.1.1 (A:) Putative isomerase YcgM {Escherichi
4e-20 d1gtta1 213
d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degrada
1e-15 d1hyoa2 298
d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolas
1e-14 d1sv6a_ 261
d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD
1e-13
>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]} Length = 217
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: FAHD1 (Flj36880, YISKL)
species: Human (Homo sapiens) [TaxId: 9606]
Score = 105 bits (264), Expect = 1e-30
Identities = 52/100 (52%), Positives = 72/100 (72%)
Query: 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMT 60
AK P+S+ +PK +PDP+ +LWLKV+ E+RQ+G T MIF IPY+IS++S I+T
Sbjct: 115 AKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIIT 174
Query: 61 LFEGDVILTGSPQGVGPVKAGQKTTAGIAGLLVVRFDNKK 100
L EGD+ILTG+P+GVGPVK + AGI GL+ + F +K
Sbjct: 175 LEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEK 214
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Length = 216
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE
species: Escherichia coli [TaxId: 562]
Score = 86.5 bits (213), Expect = 4e-23
Identities = 35/77 (45%), Positives = 53/77 (68%)
Query: 15 PKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQG 74
PK A+PDP+N L V+ E+RQQG+T D+IF +P+LI+++S MTL GD+I TG+P+G
Sbjct: 126 PKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIATGTPKG 185
Query: 75 VGPVKAGQKTTAGIAGL 91
+ V G + + G+
Sbjct: 186 LSDVVPGDEVVVEVEGV 202
>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 257
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Hypothetical protein Ynl168c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 86.1 bits (212), Expect = 2e-22
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 1 AKGQDTFTPISSVLPKSAVPD-----PYNFELWLKVDREIRQQGSTKDMIFKIPYLISHI 55
+KG DTF PIS+++ + F + V+ ++RQ G T M+ + ++ HI
Sbjct: 140 SKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLMLHPLHKILQHI 199
Query: 56 SSIMTLFEGDVILTGSPQGVGPVKAGQKTTAGIAGL--LVVRFDNKKRRRPG 105
S++++L GD+ILTG+P GVG +K G + + +V + + RPG
Sbjct: 200 STMISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDMNFECENRPG 251
>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]} Length = 221
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Putative isomerase YcgM
species: Escherichia coli [TaxId: 562]
Score = 79.1 bits (194), Expect = 4e-20
Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 4 QDTFTPISSVLPKSA-VPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLF 62
D P+S +P + DP N L L V+ E RQQG+T DMI KI LI+++S TL
Sbjct: 125 FDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMIHKIVPLIAYMSKFFTLK 184
Query: 63 EGDVILTGSPQGVGPVKAGQKTTAGIAGL 91
GDV+LTG+P GVGP+++G + T G
Sbjct: 185 AGDVVLTGTPDGVGPLQSGDELTVTFDGH 213
>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Length = 213
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE
species: Escherichia coli [TaxId: 562]
Score = 66.9 bits (162), Expect = 1e-15
Identities = 17/76 (22%), Positives = 32/76 (42%)
Query: 20 PDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVK 79
+ N ++ +++ +T D+ L+S +S TL GD IL G+PQ ++
Sbjct: 125 SNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFATLNPGDAILLGTPQARVEIQ 184
Query: 80 AGQKTTAGIAGLLVVR 95
G + G +
Sbjct: 185 PGDRVRVLAEGFPPLE 200
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 298
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]
Score = 65.1 bits (158), Expect = 1e-14
Identities = 19/133 (14%), Positives = 37/133 (27%), Gaps = 30/133 (22%)
Query: 1 AKGQDTFTPISSVLP-----------------------KSAVPDPYNFELWL------KV 31
G+ T IS + + P ++ L +
Sbjct: 132 FLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMS 191
Query: 32 DREIRQQGSTKDMIFKIPYLISHISS-IMTLFEGDVILTGSPQGVGPVKAGQKTTAGIAG 90
+ + K M + + ++H S L GD++ +G+ G P G G
Sbjct: 192 QAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKG 251
Query: 91 LLVVRFDNKKRRR 103
+ + R
Sbjct: 252 TKAIDVGQGQTRT 264
>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD {Escherichia coli [TaxId: 562]} Length = 261
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 2-keto-4-pentenoate hydratase MhpD
species: Escherichia coli [TaxId: 562]
Score = 62.7 bits (151), Expect = 1e-13
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 7/101 (6%)
Query: 3 GQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIM--- 59
I + A D N + + + E G + + ++ M
Sbjct: 159 ASCGVYVIGGPAQRPAGLDLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAVWLARKMASL 218
Query: 60 --TLFEGDVILTGSPQGVGPVKAGQKTTAGIAGL--LVVRF 96
L GD+ILTG+ + V AG + A I G+ + F
Sbjct: 219 GEPLRTGDIILTGALGPMVAVNAGDRFEAHIEGIGSVAATF 259
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 107
d1sawa_ 217
FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [Tax
100.0 d1gtta1 213
4-hydroxyphenylacetate degradation bifunctional is
100.0 d1nr9a_ 221
Putative isomerase YcgM {Escherichia coli [TaxId:
99.97 d1gtta2 216
4-hydroxyphenylacetate degradation bifunctional is
99.97 d1nkqa_ 257
Hypothetical protein Ynl168c {Baker's yeast (Sacch
99.97 d1hyoa2 298
Fumarylacetoacetate hydrolase, FAH, C-terminal dom
99.85 d1sv6a_ 261
2-keto-4-pentenoate hydratase MhpD {Escherichia co
99.81 d1tygb_ 65
Thiamin biosynthesis sulfur carrier protein ThiS {
85.28
>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: FAHD1 (Flj36880, YISKL)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.3e-35 Score=207.60 Aligned_cols=102 Identities=51% Similarity=0.901 Sum_probs=98.5
Q ss_pred CCcCCCCcccCccccCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCeeCCC
Q 039682 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVKA 80 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l~~ 80 (107)
+|+||++|++|||++.+++.|+.++++++++||+++|++++++|+|+++++|+|+|++++|+|||||+||||.|++++++
T Consensus 115 ~K~~d~~~p~Gp~v~~d~~~d~~~l~i~~~VNGe~~Q~~~t~~mi~~~~eli~~lS~~~tL~pGDvI~TGTP~Gvg~l~~ 194 (217)
T d1sawa_ 115 AKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKE 194 (217)
T ss_dssp HHCSTTCEEECCCEETTSCSCTTSCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCBCTTCEEECCCCSCCEEECT
T ss_pred cccccCcCcceeEEEHHHCCCccceEEEEEECCEEEEeCChHHhcccHHHHHHHHhCCceECCCcEEEcCCCCCCccCCC
Confidence 59999999999999888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEECceeEEEEEEEecc
Q 039682 81 GQKTTAGIAGLLVVRFDNKKRR 102 (107)
Q Consensus 81 Gd~v~~~i~g~G~l~~~v~~~~ 102 (107)
||+|+++++|||+++|+|++.+
T Consensus 195 GD~v~~~i~glG~l~n~V~~~e 216 (217)
T d1sawa_ 195 NDEIEAGIHGLVSMTFKVEKPE 216 (217)
T ss_dssp TCEEEEEETTTEEEEEEEECCC
T ss_pred CCEEEEEECCeeeEEEEEeCCC
Confidence 9999999999999999998643
>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE
species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.4e-34 Score=200.22 Aligned_cols=101 Identities=25% Similarity=0.345 Sum_probs=94.8
Q ss_pred CCcCCCCcccCccccCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCeeCCC
Q 039682 1 AKGQDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVKA 80 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l~~ 80 (107)
+|+||+|||+|||+..+ ++.++++++++||+++|++++++|+|++++||+|+|++++|+|||+|+||||.|+.++++
T Consensus 109 ~K~~d~~~p~Gp~i~~~---~~~~l~i~~~vNGe~~Q~~~t~~mi~~~~~lI~~lS~~~tL~pGDvI~TGTP~g~~~l~~ 185 (213)
T d1gtta1 109 AKCRDGFCPIGETVALS---NVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFATLNPGDAILLGTPQARVEIQP 185 (213)
T ss_dssp HHCSTTCEEBCCCBCCS---CCTTCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCBCTTCEEECCCCSCCCEECT
T ss_pred cccceecccceeeEeec---cceeEEEEEEeccccccccccccccCCHHHHHHHHhCCCCcCCCCEEEeCCcCCCccCCC
Confidence 59999999999998643 557899999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEECceeEEEEEEEeccCC
Q 039682 81 GQKTTAGIAGLLVVRFDNKKRRRP 104 (107)
Q Consensus 81 Gd~v~~~i~g~G~l~~~v~~~~~~ 104 (107)
||+|+++++|+|+++|+|..+++-
T Consensus 186 GD~v~~~ieglG~l~n~Vv~e~~~ 209 (213)
T d1gtta1 186 GDRVRVLAEGFPPLENPVVDEREV 209 (213)
T ss_dssp TCEEEEEETTSCCEEEEEEEGGGC
T ss_pred CCEEEEEEcCceEEEEEEEecccc
Confidence 999999999999999999976543
>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Putative isomerase YcgM
species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=3.1e-32 Score=193.25 Aligned_cols=97 Identities=42% Similarity=0.596 Sum_probs=91.9
Q ss_pred CCcCCCCcccCccc-cCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCeeCC
Q 039682 1 AKGQDTFTPISSVL-PKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVK 79 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i-~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l~ 79 (107)
+|+||+||++|||+ +.++..++.++++++++||+++|++++++|+|+++++|+|+|++++|+|||+|+||||.|+++++
T Consensus 122 ~K~~d~~~p~Gp~i~~~~~~~d~~~l~i~~~vNGe~~Q~~~t~~Mi~~~~elI~~lS~~~tL~pGDiI~TGTP~Gvg~l~ 201 (221)
T d1nr9a_ 122 AKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMIHKIVPLIAYMSKFFTLKAGDVVLTGTPDGVGPLQ 201 (221)
T ss_dssp HHSSTTCEEECCBEEGGGCCSCGGGCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHTTTSCBCTTCEEECCCCSCCEEEC
T ss_pred CcccCCccccceeeeeeeccCCCcccEEEEEECCEEEEecccccccCCHHHHHHHHhCCCEECCCCEEEcCCCCCCccCC
Confidence 59999999999997 56667789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECceeEEEEEE
Q 039682 80 AGQKTTAGIAGLLVVRFDN 98 (107)
Q Consensus 80 ~Gd~v~~~i~g~G~l~~~v 98 (107)
+||+|+++++| +.+.++|
T Consensus 202 ~GD~v~~~ieG-~~l~n~v 219 (221)
T d1nr9a_ 202 SGDELTVTFDG-HSLTTRV 219 (221)
T ss_dssp TTCEEEEEETT-EEEEEEB
T ss_pred CCCEEEEEEEC-CEEEEEE
Confidence 99999999999 7788776
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE
species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=3.7e-31 Score=186.98 Aligned_cols=102 Identities=39% Similarity=0.658 Sum_probs=96.5
Q ss_pred CCcCCCCcccCccc-cCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCCeeCC
Q 039682 1 AKGQDTFTPISSVL-PKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGVGPVK 79 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i-~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~~~l~ 79 (107)
+|+||+++++|||+ +.+...|+.++++++++||+++|++++++|+|+++++|+|+|++++|+|||||+||||.|+++++
T Consensus 111 ~k~~~~~~~~~p~~~~~d~~~d~~~l~i~~~vNg~~~Q~~~t~~Mi~~~~~li~~lS~~~tL~pGDvI~TGTP~Gvg~l~ 190 (216)
T d1gtta2 111 VKSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIATGTPKGLSDVV 190 (216)
T ss_dssp HHSCTTCEEBCSCCEEGGGCSCTTSCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCBCTTCEEECCCCSCCCBCC
T ss_pred cccccccccccccccchhhcCCcCceEEEEEECCEEEecCcHHHhccCHHHHHHHHhCCCCcCCCCEEEeCCCCCccCCC
Confidence 38999999999996 56666789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECceeEEEEEEEecc
Q 039682 80 AGQKTTAGIAGLLVVRFDNKKRR 102 (107)
Q Consensus 80 ~Gd~v~~~i~g~G~l~~~v~~~~ 102 (107)
+||+|+++|+|+|+++|+|..++
T Consensus 191 ~GD~ve~~i~giG~L~n~vv~e~ 213 (216)
T d1gtta2 191 PGDEVVVEVEGVGRLVNRIVSEE 213 (216)
T ss_dssp TTCEEEEEETTTEEEEEEEEEHH
T ss_pred CCCEEEEEEcCceEEEEEEEecc
Confidence 99999999999999999998753
>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Hypothetical protein Ynl168c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.5e-30 Score=188.07 Aligned_cols=102 Identities=32% Similarity=0.604 Sum_probs=88.2
Q ss_pred CCcCCCCcccCccccCC-CCCC----CcceEEEEEECCEEEEeeccchhccCHHHHHHHHHcCCccCCCCEEecCCCCCC
Q 039682 1 AKGQDTFTPISSVLPKS-AVPD----PYNFELWLKVDREIRQQGSTKDMIFKIPYLISHISSIMTLFEGDVILTGSPQGV 75 (107)
Q Consensus 1 ~K~~d~~~~~Gp~i~~~-~~~~----~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls~~~~L~~GdvI~TGt~~g~ 75 (107)
+|+||++||+|||+..+ ...+ ...+++++++||+++|++++++|+|++.++|+|+|++++|+|||||+||||.|+
T Consensus 140 ~K~~d~~~Pigp~i~~~~~~~~~~~~~~~l~i~~~vNGe~~Q~~~t~~mi~~~~elIa~lS~~~tL~pGDlI~TGTP~Gv 219 (257)
T d1nkqa_ 140 SKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLMLHPLHKILQHISTMISLEPGDIILTGTPAGV 219 (257)
T ss_dssp HHHSTTCEEBCCCEEGGGGGGGTTCCTTTEEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCBCTTCEEECCCCSCC
T ss_pred ccccccccCccceEehhhhCccccccccceEEEEEECCEEeeeeeeeccCCCHHHHHHHHhCCCCcCCCCEEEcCCCCCc
Confidence 58999999999997433 2222 245789999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCEEEEEE----CceeEEEEEEEecc
Q 039682 76 GPVKAGQKTTAGI----AGLLVVRFDNKKRR 102 (107)
Q Consensus 76 ~~l~~Gd~v~~~i----~g~G~l~~~v~~~~ 102 (107)
++|++||+|+++| ++++++++.+..+.
T Consensus 220 g~l~~GD~v~~eI~~~~~~i~~~~~~~~~~~ 250 (257)
T d1nkqa_ 220 GELKPGDRVHCELLQNNDNIVDMNFECENRP 250 (257)
T ss_dssp EEECTTCEEEEEEEETTEEEEEEEEEEEECC
T ss_pred eeCCCCCEEEEEEEeCCCcEEEEEEEEeecC
Confidence 9999999999999 55666666665543
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.85 E-value=1.2e-21 Score=143.57 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=67.3
Q ss_pred cceEEEEE------ECCEEEEeeccchhccCHHHHHHH-HHcCCccCCCCEEecCCCCCCe-------------------
Q 039682 23 YNFELWLK------VDREIRQQGSTKDMIFKIPYLISH-ISSIMTLFEGDVILTGSPQGVG------------------- 76 (107)
Q Consensus 23 ~~~~~~l~------vnG~~~~~~~~~~m~~~~~~li~~-ls~~~~L~~GdvI~TGt~~g~~------------------- 76 (107)
.++.++++ +||+.+|++++++|+|++.++|+| +|++++|+|||+|+||||.|+.
T Consensus 177 ~dl~l~~~lng~~~~ng~~~q~~nt~dMif~~~e~Ia~~~S~~~tL~pGDlI~TGTP~G~~~~~~Gd~le~~~~G~~~i~ 256 (298)
T d1hyoa2 177 FDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAID 256 (298)
T ss_dssp ECCEEEEEEECTTCSSCEEEEEEETTCCSSCHHHHHHHHHTTSCCCCTTCEEECCCCCCSSGGGCCBHHHHTTTTTSCEE
T ss_pred ccceEEEEEEEEEeecCeEEecCcHHhcCCCHHHHHHHHHhCceeechhhEEEecCCCCCCCCCCCcEEEEEecccceee
Confidence 35666665 488999999999999999999998 5689999999999999998864
Q ss_pred --------eCCCCCEEEEEEC--------ceeEEEEEEEe
Q 039682 77 --------PVKAGQKTTAGIA--------GLLVVRFDNKK 100 (107)
Q Consensus 77 --------~l~~Gd~v~~~i~--------g~G~l~~~v~~ 100 (107)
+|++||+|+++.. |+|+++++|..
T Consensus 257 ~~~g~~~~~L~~GD~V~ie~~~~~~g~~igfG~~~~~v~p 296 (298)
T d1hyoa2 257 VGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLP 296 (298)
T ss_dssp CSTTCEESSCCTTCEEEEEEEEECSSCEEEEEEEEEEEEC
T ss_pred cCCCCCcccCCCCCEEEEEEEEcCCCceEeccceEEEEec
Confidence 6999999987765 89999999864
>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 2-keto-4-pentenoate hydratase MhpD
species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=5.3e-20 Score=130.94 Aligned_cols=96 Identities=21% Similarity=0.133 Sum_probs=85.8
Q ss_pred CCCCcccCccccCCCCCCCcceEEEEEECCEEEEeeccchhccCHHHHHHHHH-----cCCccCCCCEEecCCCCCCeeC
Q 039682 4 QDTFTPISSVLPKSAVPDPYNFELWLKVDREIRQQGSTKDMIFKIPYLISHIS-----SIMTLFEGDVILTGSPQGVGPV 78 (107)
Q Consensus 4 ~d~~~~~Gp~i~~~~~~~~~~~~~~l~vnG~~~~~~~~~~m~~~~~~li~~ls-----~~~~L~~GdvI~TGt~~g~~~l 78 (107)
+.+..++|+.++.++..++.+..+++++||+.++++++++++++|...|.||+ ++.+|++||+|+|||+++++++
T Consensus 160 ~~~~~v~g~~~~~~~~~d~~~~~v~l~~ng~~~~~g~~~~~~g~P~~al~wL~~~l~~~g~~L~~G~iV~TGs~~~~~~i 239 (261)
T d1sv6a_ 160 SCGVYVIGGPAQRPAGLDLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAVWLARKMASLGEPLRTGDIILTGALGPMVAV 239 (261)
T ss_dssp GEEEEEECSCCBCSTTCCCSSCEEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHHHHTTCCBCTTCEEEEEESSCCEEC
T ss_pred CcccccccCcccchhhhccccccceEEEeceeEEecccccccCChHHHHHHHHHHHHHcCCCCCCCCEEECCCCCCCEEC
Confidence 34566788887655556889999999999999999999999999998888775 5799999999999999999999
Q ss_pred CCCCEEEEEECceeEEEEEEE
Q 039682 79 KAGQKTTAGIAGLLVVRFDNK 99 (107)
Q Consensus 79 ~~Gd~v~~~i~g~G~l~~~v~ 99 (107)
++||+|+++|+|+|++++++.
T Consensus 240 ~~Gd~v~~~f~glG~vs~~ft 260 (261)
T d1sv6a_ 240 NAGDRFEAHIEGIGSVAATFS 260 (261)
T ss_dssp CTTCEEEEEETTTEEEEEEEC
T ss_pred CCCCEEEEEEcCCcEEEEEEe
Confidence 999999999999999999875
>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Thiamin biosynthesis sulfur carrier protein ThiS
species: Bacillus subtilis [TaxId: 1423]
Probab=85.28 E-value=0.78 Score=24.50 Aligned_cols=54 Identities=9% Similarity=-0.037 Sum_probs=31.4
Q ss_pred EEECCEEEEeeccchhccCHHHHHHHHH---cCCccCC-CCEEecCCCCCCeeCCCCCEEEE
Q 039682 29 LKVDREIRQQGSTKDMIFKIPYLISHIS---SIMTLFE-GDVILTGSPQGVGPVKAGQKTTA 86 (107)
Q Consensus 29 l~vnG~~~~~~~~~~m~~~~~~li~~ls---~~~~L~~-GdvI~TGt~~g~~~l~~Gd~v~~ 86 (107)
+++||+.++-. .-..++.+|+.++. +...+.- |++|--..+ .-..++.||+|++
T Consensus 2 I~vNG~~~~~~---~~~~tl~~LL~~l~~~~~~vAVevN~~iv~k~~~-~~~~L~~gD~IEI 59 (65)
T d1tygb_ 2 LQLNGKDVKWK---KDTGTIQDLLASYQLENKIVIVERNKEIIGKERY-HEVELCDRDVIEI 59 (65)
T ss_dssp EEETTEEECCS---SSCCBHHHHHHHTTCTTSCCEEEETTEEECGGGT-TTSBCCSSSEEEE
T ss_pred EEECCEEEEcC---CCcccHHHHHHHcCCCCCcEEEEECCEEcCHHHc-CcccCCCCCEEEE
Confidence 47899886632 22246788888775 3333333 333333333 3336899998886
