Citrus Sinensis ID: 039694

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MDPSKASTALAPSKSSTDSKPKDRDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRLKSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWLAKSGLIDPKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGDGYKEEEQRMKKLKAKKLMKKLSIVQDLADGLMALADIRDGKGMLF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEc
Coil and Loop (DISEMBL)
mdpskastalapsksstdskpkdrDFLNHLEAYLAKRDGVDKLLKLSRYATKIILAssvlpetlpltgrlksfessvglsrkaFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWLAksglidpkqsrslQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGDGYKEEEQRMKKLKAKKLMKKLSIVQDLADGLMALADIRDGKGMLF
Flexible Loop (DISEMBL)
mdpskastalapsksstdskpkdrDFLNHLEAYLAKRDGVDKLLKLSRYATKiilassvlpetlpltgrLKSFESSVGLSRKAFRLGKFVQDVNALRnshldslsrEDLILSVIAYGGEGLYYFVEQFIWLAKSGLIDPKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEiaisrgdgykEEEQRMKKLKAKKLMKKLSIVQDLADGLMALADIRDGKGMLF
Low Complexity Region (SEG)
MDPSKASTALApsksstdskpkdRDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRLKSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWLAKSGLIDPKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGDGYKEEEQRmkklkakklmkklSIVQDLADGLMALADIRDGKGMLF
Disordered region (IsUnstruct)
*************************FLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRLKSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWLAKSGLIDPKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRG*******************KKLSIVQDLADGLMALAD*********
Disordered Region (DISOPRED)
*************************FLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRLKSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWLAKSGLIDPKQSRSLQKISAWAEFIGYIGSISLKFRDLKMI******************************LKAKKLMKKLSIVQDLADGLMALADIRDGKGMLF
Disordered Region (DISEMBL)
**********************DRDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRLKSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWLAKSGLIDPKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGDGYKEEEQRMKKLKAKKLMKKLSIVQDLADGLMALADIRDGKGMLF
Disordered Region (DISPRO)
********************PKDRDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRLKSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWLAKSGLIDPKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGDGYKEEEQRMKKLKAKKLMKKLSIVQDLADGLMALADIRDGKGMLF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPSKASTALAPSKSSTDSKPKDRDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRLKSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWLAKSGLIDPKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGDGYKEEEQRMKKLKAKKLMKKLSIVQDLADGLMALADIRDGKGMLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	235	2.2.26 [Sep-21-2011]
Q9FZF1	248	Peroxisomal membrane prot	yes	no	0.910	0.862	0.708	5e-82
Q10MN2	242	Peroxisomal membrane prot	yes	no	0.863	0.838	0.517	8e-53
A2XFQ8	242	Peroxisomal membrane prot	N/A	no	0.863	0.838	0.517	8e-53
Q10MN3	254	Peroxisomal membrane prot	no	no	0.880	0.814	0.457	3e-42
Q7XU74	222	Peroxisomal membrane prot	no	no	0.795	0.842	0.348	1e-25
Q01IH3	222	Peroxisomal membrane prot	N/A	no	0.795	0.842	0.348	1e-25
Q9STY0	227	Peroxisomal membrane prot	no	no	0.817	0.845	0.352	1e-19
O80845	236	Peroxisomal membrane prot	no	no	0.774	0.771	0.227	0.0001
Q5VRJ8	233	Peroxisomal membrane prot	no	no	0.493	0.497	0.271	0.0006

>sp|Q9FZF1|PX11A_ARATH Peroxisomal membrane protein 11A OS=Arabidopsis thaliana GN=PEX11A PE=1 SV=1

 Score =  303 bits (777), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 153/216 (70%), Positives = 186/216 (86%), Gaps = 2/216 (0%)

Query: 19  SKPKDRDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRLKSFESSVG 78
           +KPKDRDFLNHLE YL+KRDGVDKLLK+SRYATKIILASS++PET  +  RLKSFESSVG
Sbjct: 10  TKPKDRDFLNHLETYLSKRDGVDKLLKISRYATKIILASSLIPETRSIIPRLKSFESSVG 69

Query: 79  LSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWLAKSGLID 138
           +SRKAFRLGKFVQD+NALR+S  DS    +L+L +IAYGGEGLYYFVEQFIWL KSGLID
Sbjct: 70  VSRKAFRLGKFVQDINALRSSRWDS--NHELVLLIIAYGGEGLYYFVEQFIWLTKSGLID 127

Query: 139 PKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGDGYKEEEQR 198
            K S+ LQKISAWAE +GY+GS+S+K RDL+ + ++E+C+ASTIEI++SRG     E+++
Sbjct: 128 AKHSKWLQKISAWAELVGYVGSVSIKIRDLRKLNDEESCVASTIEISVSRGLACDGEDEK 187

Query: 199 MKKLKAKKLMKKLSIVQDLADGLMALADIRDGKGML 234
           MK +K KK +K LSI+QDLADGLM +ADIRDGKG+L
Sbjct: 188 MKMIKEKKTLKVLSILQDLADGLMTIADIRDGKGVL 223

Involved in peroxisomal proliferation. Promotes peroxisomal duplication, aggregation or elongation without fission.
Arabidopsis thaliana (taxid: 3702)

>sp|Q10MN2|PX113_ORYSJ Peroxisomal membrane protein 11-3 OS=Oryza sativa subsp. japonica GN=PEX11-3 PE=2 SV=1

 Score =  206 bits (525), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 116/224 (51%), Positives = 162/224 (72%), Gaps = 21/224 (9%)

Query: 16  STDSK-----PKDRDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRL 70
           S+DS+     P  RDFL H+EAYL++RDGVDKLLK+SRYA ++ LA+  LP     + RL
Sbjct: 10  SSDSRKPAAHPPPRDFLVHVEAYLSRRDGVDKLLKISRYAARLALAAGPLPPA--ASARL 67

Query: 71  KSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIW 130
           KSFESSVGLSRKAFRLGKFVQ+VNALR +H          ++++AYGGEG+YYF+EQF+W
Sbjct: 68  KSFESSVGLSRKAFRLGKFVQNVNALR-AH----PHPPPAVALLAYGGEGVYYFLEQFVW 122

Query: 131 LAKSGLIDPKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGD 190
           LAK+GL+       LQ++SAWAE +GY+GSI++K       LE+   L S++++ +   +
Sbjct: 123 LAKAGLLPAHLLPRLQRLSAWAELLGYVGSITIK-------LEEIGKLESSVKMRLK--E 173

Query: 191 GYKEEEQRMKKLKAKKLMKKLSIVQDLADGLMALADIRDGKGML 234
           G +EE   ++ L+ K L+K++S+VQD+AD +MAL D+ DGKG+L
Sbjct: 174 GCREESDVVRTLRVKLLLKRMSVVQDVADAVMALGDVTDGKGLL 217

Involved in peroxisomal proliferation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XFQ8|PX113_ORYSI Peroxisomal membrane protein 11-3 OS=Oryza sativa subsp. indica GN=PEX11-3 PE=2 SV=1

 Score =  206 bits (525), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 116/224 (51%), Positives = 162/224 (72%), Gaps = 21/224 (9%)

Query: 16  STDSK-----PKDRDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRL 70
           S+DS+     P  RDFL H+EAYL++RDGVDKLLK+SRYA ++ LA+  LP     + RL
Sbjct: 10  SSDSRKPAAHPPPRDFLVHVEAYLSRRDGVDKLLKISRYAARLALAAGPLPPA--ASARL 67

Query: 71  KSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIW 130
           KSFESSVGLSRKAFRLGKFVQ+VNALR +H          ++++AYGGEG+YYF+EQF+W
Sbjct: 68  KSFESSVGLSRKAFRLGKFVQNVNALR-AH----PHPPPAVALLAYGGEGVYYFLEQFVW 122

Query: 131 LAKSGLIDPKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGD 190
           LAK+GL+       LQ++SAWAE +GY+GSI++K       LE+   L S++++ +   +
Sbjct: 123 LAKAGLLPAHLLPRLQRLSAWAELLGYVGSITIK-------LEEIGKLESSVKMRLK--E 173

Query: 191 GYKEEEQRMKKLKAKKLMKKLSIVQDLADGLMALADIRDGKGML 234
           G +EE   ++ L+ K L+K++S+VQD+AD +MAL D+ DGKG+L
Sbjct: 174 GCREESDVVRTLRVKLLLKRMSVVQDVADAVMALGDVTDGKGLL 217

Involved in peroxisomal proliferation.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q10MN3|PX112_ORYSJ Peroxisomal membrane protein 11-2 OS=Oryza sativa subsp. japonica GN=PEX11-2 PE=2 SV=1

 Score =  171 bits (434), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/221 (45%), Positives = 142/221 (64%), Gaps = 14/221 (6%)

Query: 19  SKPK--DRDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLP--LTGRLKSFE 74
           S+P+   RD L H+EAYL++RDGVD LLK+S YA ++ LA +     LP   T RL+SFE
Sbjct: 18  SRPRLPCRDILVHIEAYLSRRDGVDNLLKVSLYAARLALALAAGQPPLPHAATARLRSFE 77

Query: 75  SSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWLAKS 134
           SSVGLSRKAFRLGKFVQ +NALR +          +L ++AYGG+G+Y F+EQF WLAK+
Sbjct: 78  SSVGLSRKAFRLGKFVQSINALRAAAYHPHPHVHPLLVLLAYGGQGVYNFLEQFAWLAKA 137

Query: 135 GLIDPK-QSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGDGYK 193
           GL+  +   R L +I  WA+ + ++GSI++K       LE+ A L   +E  +  G G  
Sbjct: 138 GLLPARLLPRRLHRIGVWAQLLAHVGSIAIK-------LEEVAELECGVEARLEEGCG-- 188

Query: 194 EEEQRMKKLKAKKLMKKLSIVQDLADGLMALADIRDGKGML 234
           EE + ++ L  K L+K +S+VQD+ D  M + D+   KG+L
Sbjct: 189 EESEVVRTLSRKLLLKLMSLVQDMVDSAMTVGDVTGRKGLL 229

Involved in peroxisomal proliferation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XU74|PX114_ORYSJ Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. japonica GN=PEX11-4 PE=2 SV=2

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 121/204 (59%), Gaps = 17/204 (8%)

Query: 25  DFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLP-LTGRLKSFESSVGLSRKA 83
           D L+ L  +LAKRDG+DKL+K  +Y +K  LA      + P L GR K++E+S GLSRKA
Sbjct: 5   DTLDKLVVFLAKRDGIDKLVKTFQYVSK--LAHWAAESSSPGLAGRAKNWETSAGLSRKA 62

Query: 84  FRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWLAKSGLIDPKQSR 143
           FR G+F+  +N LR +       E   L+V+A  GE +Y+F + F WL++ G++D   +R
Sbjct: 63  FRTGRFLTGLNGLRRA-----PGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLDAWLAR 117

Query: 144 SLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGDGYKEEEQRMKKLK 203
            +  ISA+ E +GY+  I++    ++  L  E  L           +G K++++ +KK++
Sbjct: 118 RMSFISAFGESVGYVFFIAMDLIMIRRGLRQERKLLR---------EGGKDKDKEVKKIR 168

Query: 204 AKKLMKKLSIVQDLADGLMALADI 227
             ++M+ ++   ++AD ++ +ADI
Sbjct: 169 MDRVMRLMATAANVADLVIGIADI 192

Involved in peroxisomal proliferation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q01IH3|PX114_ORYSI Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. indica GN=PEX11-4 PE=2 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 121/204 (59%), Gaps = 17/204 (8%)

Query: 25  DFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLP-LTGRLKSFESSVGLSRKA 83
           D L+ L  +LAKRDG+DKL+K  +Y +K  LA      + P L GR K++E+S GLSRKA
Sbjct: 5   DTLDKLVVFLAKRDGIDKLVKTFQYVSK--LAHWAAESSSPGLAGRAKNWETSAGLSRKA 62

Query: 84  FRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWLAKSGLIDPKQSR 143
           FR G+F+  +N LR +       E   L+V+A  GE +Y+F + F WL++ G++D   +R
Sbjct: 63  FRTGRFLTGLNGLRRA-----PGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLDAWLAR 117

Query: 144 SLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGDGYKEEEQRMKKLK 203
            +  ISA+ E +GY+  I++    ++  L  E  L           +G K++++ +KK++
Sbjct: 118 RMSFISAFGESVGYVFFIAMDLIMIRRGLRQERKLLR---------EGGKDKDKEVKKIR 168

Query: 204 AKKLMKKLSIVQDLADGLMALADI 227
             ++M+ ++   ++AD ++ +ADI
Sbjct: 169 MDRVMRLMATAANVADLVIGIADI 192

Involved in peroxisomal proliferation.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9STY0|PX11B_ARATH Peroxisomal membrane protein 11B OS=Arabidopsis thaliana GN=PEX11B PE=1 SV=1

 Score = 96.7 bits (239), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 113/207 (54%), Gaps = 15/207 (7%)

Query: 25  DFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTG-RLKSFESSVGLSRKA 83
           D ++ L  +LAKRDG+DKL+K  +Y  K  LA   +  T P    R K +E + GLSRKA
Sbjct: 4   DTVDKLVVFLAKRDGIDKLVKTFQYVAK--LACWHVEATRPEAADRFKKWEVASGLSRKA 61

Query: 84  FRLGKFVQDVNALR-NSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWLAKSGLIDPKQS 142
           FR G+ +   NALR N     + R    L+V+A  GE +Y+F + F+WL++ G ID K +
Sbjct: 62  FRTGRSLTGFNALRRNPGATPMIR---FLAVLANSGEMVYFFFDHFLWLSRIGSIDAKLA 118

Query: 143 RSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGDGYKEE-EQRMKK 201
           + +  ISA+ E  GY   I +    +K  L+    L  +        D  KEE   ++ +
Sbjct: 119 KKMSFISAFGESFGYTFFIIIDCIFIKQRLKSLKKLQHST-------DEPKEEIGAKISE 171

Query: 202 LKAKKLMKKLSIVQDLADGLMALADIR 228
           ++   +M+ + I  ++AD L+ALA+I 
Sbjct: 172 IRGDIVMRLMGISANVADLLIALAEIH 198

Involved in peroxisomal proliferation. Promotes peroxisomal duplication, aggregation or elongation without fission.

Arabidopsis thaliana (taxid: 3702)

>sp|O80845|PX11D_ARATH Peroxisomal membrane protein 11D OS=Arabidopsis thaliana GN=PEX11D PE=1 SV=2

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 92/202 (45%), Gaps = 20/202 (9%)

Query: 33  YLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRLKSFESSVGLSRKAFRLGKFVQD 92
           YL K +  DKL +  +Y +K +             G  ++ + S  L+RK FRL KFV D
Sbjct: 18  YLNKAEARDKLCRAIQYGSKFLSGGQ--------PGTAQNVDKSTSLARKVFRLFKFVND 69

Query: 93  VNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWLAKSGLIDPKQ-SRSLQKISAW 151
           ++ L +          ++L          + F++Q +WL +SG+   K+ +  L +IS +
Sbjct: 70  LHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAELLGRISLF 129

Query: 152 AEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGDGYKEEEQRMKKLKAKKLMKKL 211
                 + +  ++  ++  +          IE  +  G+ Y++E+ R K  K+ +  + L
Sbjct: 130 CWMGSSVCTTLVEVGEMGRLSSS----MKKIEKGLKNGNKYQDEDYRAKLKKSNE--RSL 183

Query: 212 SIVQD-----LADGLMALADIR 228
           ++++      +A GL+ LA  +
Sbjct: 184 ALIKSAMDIVVAAGLLQLAPTK 205

Involved in peroxisomal proliferation. Promotes peroxisomal duplication, aggregation or elongation without fission.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5VRJ8|PX115_ORYSJ Peroxisomal membrane protein 11-5 OS=Oryza sativa subsp. japonica GN=PEX11-5 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 13/129 (10%)

Query: 33  YLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRLKSFESSVGLSRKAFRLGKFVQD 92
           YL K +  DK+ +  +Y +K +  S+  P      G  ++ + S  L+RK FRL KFV D
Sbjct: 17  YLNKAEARDKICRAIQYGSKFV--SNGQP------GPAQNVDKSTSLARKVFRLFKFVND 68

Query: 93  VNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWLAKSGLIDPKQ-SRSLQKISAW 151
           ++AL +          ++L          + F++Q +W  ++G+   K+ +  L KI+  
Sbjct: 69  LHALISPPAKGTPLPLILLGKSKNALLSTFLFLDQIVWAGRTGIYKNKERAEFLSKIA-- 126

Query: 152 AEFIGYIGS 160
             F  ++GS
Sbjct: 127 --FYCFLGS 133

Involved in peroxisomal proliferation.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
224136566	255	predicted protein [Populus trichocarpa]	0.978	0.901	0.747	3e-93
225458358	260	PREDICTED: peroxisomal membrane protein	0.978	0.884	0.741	3e-92
224067371	269	predicted protein [Populus trichocarpa]	0.965	0.843	0.742	1e-91
225458360	260	PREDICTED: peroxisomal membrane protein	0.978	0.884	0.754	2e-91
255538568	261	peroxisomal biogenesis factor, putative	0.982	0.885	0.706	1e-90
449470003	247	PREDICTED: peroxisomal membrane protein	0.919	0.874	0.737	3e-90
449496059	247	PREDICTED: peroxisomal membrane protein	0.919	0.874	0.737	1e-89
21536511	248	unknown [Arabidopsis thaliana] gi|563684	0.910	0.862	0.708	2e-80
18401872	248	peroxisomal membrane protein 11A [Arabid	0.910	0.862	0.708	3e-80
297852372	248	peroxisomal biogenesis factor 11 family	0.940	0.891	0.694	3e-79

>gi|224136566|ref|XP_002326892.1| predicted protein [Populus trichocarpa] gi|222835207|gb|EEE73642.1| predicted protein [Populus trichocarpa]

 Score =  347 bits (889), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 175/234 (74%), Positives = 198/234 (84%), Gaps = 4/234 (1%)

Query: 1   MDPSKASTALAPSKSSTDSKPKDRDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVL 60
           MDP  + T    + +   +K   RDFLNHLE YLAKRDGVDKLLK+SRYATKIILASSVL
Sbjct: 1   MDPKPSPTP--QNANEIPNKQGQRDFLNHLEVYLAKRDGVDKLLKISRYATKIILASSVL 58

Query: 61  PETLPLTGRLKSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEG 120
           PETL +T RLKSFESSVGLSRKAFRLGKFVQDVNALR SH DS  ++++ILS IAYGGEG
Sbjct: 59  PETLIVTKRLKSFESSVGLSRKAFRLGKFVQDVNALRGSHFDS--KQEIILSFIAYGGEG 116

Query: 121 LYYFVEQFIWLAKSGLIDPKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLAS 180
           LYYFVEQF+WLAKSGLID K S+SL KISAWAEF+GYIGSISLKFRDLK + EDE CL S
Sbjct: 117 LYYFVEQFVWLAKSGLIDSKHSKSLGKISAWAEFVGYIGSISLKFRDLKKLSEDEVCLES 176

Query: 181 TIEIAISRGDGYKEEEQRMKKLKAKKLMKKLSIVQDLADGLMALADIRDGKGML 234
           ++EIA++RG G +EEE+R+ KL+ KKLMKKLSIVQD ADGLMALADIRDG+G  
Sbjct: 177 SVEIAVTRGVGRQEEERRLWKLREKKLMKKLSIVQDFADGLMALADIRDGRGQF 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458358|ref|XP_002281733.1| PREDICTED: peroxisomal membrane protein 11A [Vitis vinifera]

 Score =  343 bits (880), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 172/232 (74%), Positives = 198/232 (85%), Gaps = 2/232 (0%)

Query: 3   PSKASTALAPSKSSTDSKPKDRDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPE 62
           PS  +++  P  S T S   +RDFLNHLEAYLAKRDGVDKLLK+SRYAT+IILASS+LPE
Sbjct: 6   PSNLASSQNPKSSITKSVSNNRDFLNHLEAYLAKRDGVDKLLKISRYATRIILASSLLPE 65

Query: 63  TLPLTGRLKSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEGLY 122
           TL L  RLKSFESSVG+SRKAFRLGKFVQD+NALRN+  DS  +ED+ILS+IAYGGEGLY
Sbjct: 66  TLTLNRRLKSFESSVGVSRKAFRLGKFVQDLNALRNTCFDS--KEDVILSIIAYGGEGLY 123

Query: 123 YFVEQFIWLAKSGLIDPKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTI 182
            F+EQF+W  KSGLID K SR+LQKISAWAEF+GYIGSISLK RDLK I EDE+ L STI
Sbjct: 124 MFIEQFVWFVKSGLIDAKHSRNLQKISAWAEFVGYIGSISLKIRDLKRINEDESRLLSTI 183

Query: 183 EIAISRGDGYKEEEQRMKKLKAKKLMKKLSIVQDLADGLMALADIRDGKGML 234
           EI+ISRG  Y EE ++++K+K K+LMK+LSIVQDLADGLMALADIRDGKG L
Sbjct: 184 EISISRGLKYDEEAKKIQKMKEKRLMKRLSIVQDLADGLMALADIRDGKGRL 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067371|ref|XP_002302475.1| predicted protein [Populus trichocarpa] gi|222844201|gb|EEE81748.1| predicted protein [Populus trichocarpa]

 Score =  342 bits (876), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 173/233 (74%), Positives = 200/233 (85%), Gaps = 6/233 (2%)

Query: 1   MDPSKASTALAPSKSS-TDSKPKDRDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSV 59
           MDP  + T   P  S+ T +KP+ RDFLNHLE YLAKRDGVDKLLK+SRYATKIILASS+
Sbjct: 1   MDPRPSPT---PQNSNQTPNKPRQRDFLNHLEVYLAKRDGVDKLLKISRYATKIILASSL 57

Query: 60  LPETLPLTGRLKSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGE 119
           LPETL LT RLKSFESSVGLSRKAFRLGKFVQDVNALR+S  D+  +++ ILS+IAYGGE
Sbjct: 58  LPETLILTKRLKSFESSVGLSRKAFRLGKFVQDVNALRDSPFDT--KQETILSIIAYGGE 115

Query: 120 GLYYFVEQFIWLAKSGLIDPKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLA 179
           GLYYFVEQF+WLAKSGLID K S+SL K+SAWAEF+GYIGSISLKFRDLK + EDE CL 
Sbjct: 116 GLYYFVEQFVWLAKSGLIDSKHSKSLGKVSAWAEFVGYIGSISLKFRDLKKLSEDEVCLE 175

Query: 180 STIEIAISRGDGYKEEEQRMKKLKAKKLMKKLSIVQDLADGLMALADIRDGKG 232
           S+I ++++RG G +E E+R+ KL+ KKLMKKLSIVQD ADGLMALADIRDG+G
Sbjct: 176 SSIGVSVTRGVGCQEGERRLWKLREKKLMKKLSIVQDFADGLMALADIRDGRG 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458360|ref|XP_002281759.1| PREDICTED: peroxisomal membrane protein 11A [Vitis vinifera] gi|302142451|emb|CBI19654.3| unnamed protein product [Vitis vinifera]

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 175/232 (75%), Positives = 195/232 (84%), Gaps = 2/232 (0%)

Query: 3   PSKASTALAPSKSSTDSKPKDRDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPE 62
           PS  + +  P  S T S   DRDFLNHLEAYLAKRDGVDKLLK+SRYATKIILASS+LPE
Sbjct: 6   PSNLAFSQNPKSSITKSVSNDRDFLNHLEAYLAKRDGVDKLLKISRYATKIILASSLLPE 65

Query: 63  TLPLTGRLKSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEGLY 122
           TL L  RLKSFESSVG+SRKAFRLGKFVQD+NALRNS  DS  +ED+ILS+IAYGGEGLY
Sbjct: 66  TLTLNRRLKSFESSVGVSRKAFRLGKFVQDLNALRNSCFDS--KEDVILSIIAYGGEGLY 123

Query: 123 YFVEQFIWLAKSGLIDPKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTI 182
            FVEQF+W  KSGLID K SR+LQKISAWA F+G+IGSISLK RDLK I EDE+ L STI
Sbjct: 124 MFVEQFVWFVKSGLIDAKHSRNLQKISAWAGFVGHIGSISLKIRDLKRINEDESRLLSTI 183

Query: 183 EIAISRGDGYKEEEQRMKKLKAKKLMKKLSIVQDLADGLMALADIRDGKGML 234
           EI+ISRG  Y EE +++ KLK K+LMK+LSIVQDLADGLMALADIRDGKG L
Sbjct: 184 EISISRGLKYDEEAKKIHKLKEKRLMKRLSIVQDLADGLMALADIRDGKGRL 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538568|ref|XP_002510349.1| peroxisomal biogenesis factor, putative [Ricinus communis] gi|223551050|gb|EEF52536.1| peroxisomal biogenesis factor, putative [Ricinus communis]

 Score =  338 bits (867), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 166/235 (70%), Positives = 201/235 (85%), Gaps = 4/235 (1%)

Query: 2   DPSKAST-ALAPSKSSTDSKP-KDRDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSV 59
           D SK +T +  P+   T + P K++DFLNHLE YLAKRDGVDKLLK+SRYA+KIILAS+ 
Sbjct: 4   DTSKTATESQKPAIPKTLAPPSKEKDFLNHLETYLAKRDGVDKLLKISRYASKIILASNT 63

Query: 60  LPETLPLTGRLKSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGE 119
           LPETL LT RLKSFESSVGLSRKAFRLGKFVQD+N++RNSH D+  +++++LS+IAYGGE
Sbjct: 64  LPETLILTQRLKSFESSVGLSRKAFRLGKFVQDINSIRNSHFDT--KQEVVLSIIAYGGE 121

Query: 120 GLYYFVEQFIWLAKSGLIDPKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLA 179
           GLYYFVEQF+WL K+GLID K ++ L KISAWAEF+GYIGSIS+K RDLK + E+E CL 
Sbjct: 122 GLYYFVEQFVWLVKAGLIDGKHTKKLGKISAWAEFVGYIGSISIKLRDLKKLNENEVCLG 181

Query: 180 STIEIAISRGDGYKEEEQRMKKLKAKKLMKKLSIVQDLADGLMALADIRDGKGML 234
           S+IE+A  RG+G++EEE+RM+KL+ KKLMKKLSI QD ADGLMALADIRDGKG L
Sbjct: 182 SSIEVAAVRGNGFEEEEKRMRKLREKKLMKKLSIAQDFADGLMALADIRDGKGRL 236

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470003|ref|XP_004152708.1| PREDICTED: peroxisomal membrane protein 11A-like [Cucumis sativus]

 Score =  337 bits (863), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 163/221 (73%), Positives = 191/221 (86%), Gaps = 5/221 (2%)

Query: 12  PSKSSTDSKPKDRDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRLK 71
           P  SST+   K RDF NHLEAYLAKRDGVDKLLK+SRY TKIIL+SS + E+ PLT RLK
Sbjct: 5   PPPSSTE---KQRDFFNHLEAYLAKRDGVDKLLKISRYTTKIILSSSAISESHPLTQRLK 61

Query: 72  SFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWL 131
           SFESSVG+SRKAFRLGKF+QD+NALRNSH +S   ++ +L+++AYGGEG YYFVEQFIWL
Sbjct: 62  SFESSVGVSRKAFRLGKFIQDLNALRNSHFES--NQEFLLALLAYGGEGFYYFVEQFIWL 119

Query: 132 AKSGLIDPKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGDG 191
           AKSGLID + S  LQKISAWAE IGYIGSISLKFRDL  ILEDEACL ++IEIA++RG G
Sbjct: 120 AKSGLIDKRHSSRLQKISAWAELIGYIGSISLKFRDLNRILEDEACLKASIEIAVNRGIG 179

Query: 192 YKEEEQRMKKLKAKKLMKKLSIVQDLADGLMALADIRDGKG 232
           ++EEE++MKKL+AK+LMKKLSIVQD ADG MA+AD+RDG G
Sbjct: 180 HREEEEKMKKLRAKRLMKKLSIVQDFADGFMAVADVRDGNG 220

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496059|ref|XP_004160026.1| PREDICTED: peroxisomal membrane protein 11A-like [Cucumis sativus]

 Score =  335 bits (859), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 163/221 (73%), Positives = 190/221 (85%), Gaps = 5/221 (2%)

Query: 12  PSKSSTDSKPKDRDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRLK 71
           P  SST+   K RDF NHLEAYLAKRDGVDKLLK+SRY TKIIL+SS + E+ PLT RLK
Sbjct: 5   PPPSSTE---KQRDFFNHLEAYLAKRDGVDKLLKISRYTTKIILSSSAISESHPLTQRLK 61

Query: 72  SFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWL 131
           SFESSVG+SRKAFRLGKF+QD+NALRNSH +S   ++ +L+++AYGGEG YYFVEQFIWL
Sbjct: 62  SFESSVGVSRKAFRLGKFIQDLNALRNSHFES--NQEFLLALLAYGGEGFYYFVEQFIWL 119

Query: 132 AKSGLIDPKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGDG 191
           AKSGLID + S  LQKISAWAE IGYIGSISLKFRDL  ILEDEACL ++IEIA++RG G
Sbjct: 120 AKSGLIDKRHSSRLQKISAWAELIGYIGSISLKFRDLNRILEDEACLKASIEIAVNRGIG 179

Query: 192 YKEEEQRMKKLKAKKLMKKLSIVQDLADGLMALADIRDGKG 232
           ++EEE++MKKL+AK LMKKLSIVQD ADG MA+AD+RDG G
Sbjct: 180 HREEEEKMKKLRAKMLMKKLSIVQDFADGFMAVADVRDGNG 220

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536511|gb|AAM60843.1| unknown [Arabidopsis thaliana] gi|56368451|emb|CAD58677.1| putative PEX11-3 protein [Arabidopsis thaliana]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 153/216 (70%), Positives = 186/216 (86%), Gaps = 2/216 (0%)

Query: 19  SKPKDRDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRLKSFESSVG 78
           +KPKDRDFLNHLE YL+KRDGVDKLLK+SRYATKIILASS++PET  +  RLKSFESSVG
Sbjct: 10  TKPKDRDFLNHLETYLSKRDGVDKLLKISRYATKIILASSLIPETRSIIPRLKSFESSVG 69

Query: 79  LSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWLAKSGLID 138
           +SRKAFRLGKFVQD+NALR+S  DS    +L+L +IAYGGEGLYYFVEQFIWL KSGLID
Sbjct: 70  VSRKAFRLGKFVQDINALRSSRWDS--NHELVLLIIAYGGEGLYYFVEQFIWLTKSGLID 127

Query: 139 PKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGDGYKEEEQR 198
            K S+ LQKISAWAE +GY+GS+S+K RDL+ + ++E+C+ASTIEI++SRG     E+++
Sbjct: 128 AKHSKWLQKISAWAELVGYVGSVSIKIRDLRKLNDEESCVASTIEISVSRGLACDGEDEK 187

Query: 199 MKKLKAKKLMKKLSIVQDLADGLMALADIRDGKGML 234
           MK +K KK +K LSI+QDLADGLM +ADIRDGKG+L
Sbjct: 188 MKMIKEKKTLKVLSILQDLADGLMTIADIRDGKGVL 223

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401872|ref|NP_564514.1| peroxisomal membrane protein 11A [Arabidopsis thaliana] gi|75173415|sp|Q9FZF1.1|PX11A_ARATH RecName: Full=Peroxisomal membrane protein 11A; AltName: Full=Peroxin-11A; Short=AtPEX11a gi|9802590|gb|AAF99792.1|AC012463_9 T2E6.18 [Arabidopsis thaliana] gi|87116582|gb|ABD19655.1| At1g47750 [Arabidopsis thaliana] gi|110742371|dbj|BAE99108.1| hypothetical protein [Arabidopsis thaliana] gi|332194087|gb|AEE32208.1| peroxisomal membrane protein 11A [Arabidopsis thaliana]

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 153/216 (70%), Positives = 186/216 (86%), Gaps = 2/216 (0%)

Query: 19  SKPKDRDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRLKSFESSVG 78
           +KPKDRDFLNHLE YL+KRDGVDKLLK+SRYATKIILASS++PET  +  RLKSFESSVG
Sbjct: 10  TKPKDRDFLNHLETYLSKRDGVDKLLKISRYATKIILASSLIPETRSIIPRLKSFESSVG 69

Query: 79  LSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWLAKSGLID 138
           +SRKAFRLGKFVQD+NALR+S  DS    +L+L +IAYGGEGLYYFVEQFIWL KSGLID
Sbjct: 70  VSRKAFRLGKFVQDINALRSSRWDS--NHELVLLIIAYGGEGLYYFVEQFIWLTKSGLID 127

Query: 139 PKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGDGYKEEEQR 198
            K S+ LQKISAWAE +GY+GS+S+K RDL+ + ++E+C+ASTIEI++SRG     E+++
Sbjct: 128 AKHSKWLQKISAWAELVGYVGSVSIKIRDLRKLNDEESCVASTIEISVSRGLACDGEDEK 187

Query: 199 MKKLKAKKLMKKLSIVQDLADGLMALADIRDGKGML 234
           MK +K KK +K LSI+QDLADGLM +ADIRDGKG+L
Sbjct: 188 MKMIKEKKTLKVLSILQDLADGLMTIADIRDGKGVL 223

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852372|ref|XP_002894067.1| peroxisomal biogenesis factor 11 family protein [Arabidopsis lyrata subsp. lyrata] gi|297339909|gb|EFH70326.1| peroxisomal biogenesis factor 11 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 157/226 (69%), Positives = 189/226 (83%), Gaps = 5/226 (2%)

Query: 9   ALAPSKSSTDSKPKDRDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTG 68
           A AP K +   KPKDRDFLNHLE YLAKRDGVDKLLK+SRYATKIILASS++PE+  +  
Sbjct: 3   AKAPEKIT---KPKDRDFLNHLETYLAKRDGVDKLLKISRYATKIILASSLIPESRSIIP 59

Query: 69  RLKSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQF 128
           RLKSFESSVG+SRKAFRLGKFVQD+NALR+S  DS    +L+L +IAYGGEGLYYFVEQF
Sbjct: 60  RLKSFESSVGVSRKAFRLGKFVQDINALRSSRWDS--NHELVLLLIAYGGEGLYYFVEQF 117

Query: 129 IWLAKSGLIDPKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISR 188
           IWL KSGLID K S+ LQKISAWAE +GY+GS+SLK RDL+ + ++E C+ASTIEI++SR
Sbjct: 118 IWLTKSGLIDAKHSKWLQKISAWAELVGYVGSVSLKVRDLRKLNDEERCVASTIEISVSR 177

Query: 189 GDGYKEEEQRMKKLKAKKLMKKLSIVQDLADGLMALADIRDGKGML 234
           G     ++++MK +K KK +K LSI+QDLADGLM +ADIRDGKG+L
Sbjct: 178 GLACDGDDEKMKMIKEKKTLKVLSILQDLADGLMTVADIRDGKGVL 223

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
TAIR|locus:2202430	248	PEX11A "AT1G47750" [Arabidopsi	0.889	0.842	0.672	1.8e-71
TAIR|locus:2099590	227	PEX11B "AT3G47430" [Arabidopsi	0.544	0.563	0.414	4e-19
UNIPROTKB|Q00317	256	PEX11B "Peroxisomal membrane p	0.595	0.546	0.301	4.3e-06
UNIPROTKB|Q00316	256	PEX11A "Peroxisomal membrane p	0.629	0.578	0.291	5.7e-06
TAIR|locus:2050694	236	PEX11D "AT2G45740" [Arabidopsi	0.655	0.652	0.251	6.2e-05
FB|FBgn0034058	241	Pex11 "Peroxin 11" [Drosophila	0.4	0.390	0.343	0.00015
TAIR|locus:2198150	235	PEX11C "AT1G01820" [Arabidopsi	0.655	0.655	0.239	0.00044

TAIR|locus:2202430 PEX11A "AT1G47750" [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 142/211 (67%), Positives = 172/211 (81%)

Query:    24 RDFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRLKSFESSVGLSRKA 83
             RDFLNHLE YL+KRDGVDKLLK+SRYATKIILASS++PET  +  RLKSFESSVG+SRKA
Sbjct:    15 RDFLNHLETYLSKRDGVDKLLKISRYATKIILASSLIPETRSIIPRLKSFESSVGVSRKA 74

Query:    84 FRLGKFVQDVNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWLAKSGLIDPKQSR 143
             FRLGKFVQD+NALR+S  DS    +L+L +IAYGGEGLYYFVEQFIWL KSGLID K S+
Sbjct:    75 FRLGKFVQDINALRSSRWDS--NHELVLLIIAYGGEGLYYFVEQFIWLTKSGLIDAKHSK 132

Query:   144 SLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGDGYKEEEQRXXXXX 203
              LQKISAWAE +GY+GS+S+K RDL+ + ++E+C+ASTIEI++SRG     E+++     
Sbjct:   133 WLQKISAWAELVGYVGSVSIKIRDLRKLNDEESCVASTIEISVSRGLACDGEDEKMKMIK 192

Query:   204 XXXXXXXXSIVQDLADGLMALADIRDGKGML 234
                     SI+QDLADGLM +ADIRDGKG+L
Sbjct:   193 EKKTLKVLSILQDLADGLMTIADIRDGKGVL 223

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=IEA;IDA

GO:0016559 "peroxisome fission" evidence=IEA;ISS;IMP

GO:0007031 "peroxisome organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005777 "peroxisome" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

TAIR|locus:2099590 PEX11B "AT3G47430" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 56/135 (41%), Positives = 80/135 (59%)

Query:    25 DFLNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLP-LTGRLKSFESSVGLSRKA 83
             D ++ L  +LAKRDG+DKL+K  +Y  K  LA   +  T P    R K +E + GLSRKA
Sbjct:     4 DTVDKLVVFLAKRDGIDKLVKTFQYVAK--LACWHVEATRPEAADRFKKWEVASGLSRKA 61

Query:    84 FRLGKFVQDVNALR-NSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWLAKSGLIDPKQS 142
             FR G+ +   NALR N     + R    L+V+A  GE +Y+F + F+WL++ G ID K +
Sbjct:    62 FRTGRSLTGFNALRRNPGATPMIR---FLAVLANSGEMVYFFFDHFLWLSRIGSIDAKLA 118

Query:   143 RSLQKISAWAEFIGY 157
             + +  ISA+ E  GY
Sbjct:   119 KKMSFISAFGESFGY 133

GO:0003674 "molecular_function" evidence=ND

GO:0005778 "peroxisomal membrane" evidence=ISS;IDA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

GO:0016559 "peroxisome fission" evidence=IEA;ISS;IMP

GO:0007031 "peroxisome organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005777 "peroxisome" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

UNIPROTKB|Q00317 PEX11B "Peroxisomal membrane protein PMP30B" [Candida boidinii (taxid:5477)]

 Score = 125 (49.1 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 48/159 (30%), Positives = 78/159 (49%)

Query:    35 AKRDGVDKLLK-LSRYATKIILASSVLPETLPLTGRLKSFESSVGLSRKAFRLGKFVQDV 93
             A R+ + +LL+ L R+ T      +   ET+ L   +K  +SS+G+SRK  R   F++++
Sbjct:    23 ASREKLLRLLQYLCRFLTFYTFKRNFNIETIQL---IKKIQSSIGISRKPLR---FLKNL 76

Query:    94 NALRNSHLDSLSREDLILSVIAYG------GEGLYYFVEQFIWLAKSGLIDPKQSRSL-- 145
               L+N  L+ +   +L+ S +  G      G  LY+  +   WL   GL+  K S SL  
Sbjct:    77 PHLKN--LNKIYSNELLDSTLKIGDLIKNFGYALYFQFDTLQWLKLLGLLTSKNSGSLYF 134

Query:   146 --QKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTI 182
                K++A    IG  GSI    R+LK+  +    L + I
Sbjct:   135 KIDKLAANFWLIGLTGSIITDLRNLKISYDSNKALLNEI 173

GO:0005779 "integral to peroxisomal membrane" evidence=ISS

GO:0007031 "peroxisome organization" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

UNIPROTKB|Q00316 PEX11A "Peroxisomal membrane protein PMP30A" [Candida boidinii (taxid:5477)]

 Score = 124 (48.7 bits), Expect = 5.7e-06, P = 5.7e-06
 Identities = 49/168 (29%), Positives = 82/168 (48%)

Query:    35 AKRDGVDKLLK-LSRYATKIILASSVLPETLPLTGRLKSFESSVGLSRKAFRLGKFVQDV 93
             A R+ + +LL+ L R+ T      ++  ET+ L   +K  +SS+ +SRK  R   F++++
Sbjct:    23 ASREKLLRLLQYLCRFLTYYTFRRNINIETIQL---IKKIQSSIAISRKPLR---FLKNL 76

Query:    94 NALRNSHLDSLSREDLILSVIAYG------GEGLYYFVEQFIWLAKSGLIDPKQSRSL-- 145
               L+N  L+ +   +L+ S I  G      G  LY+  +   WL   GL+  K S +L  
Sbjct:    77 PHLKN--LNKIYSNELLDSTIRIGDLIKNFGYALYFQFDTLQWLKLLGLLTSKNSGALYF 134

Query:   146 --QKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGDG 191
                K++A    IG  GSI    R+LK+  +    L + I  +  + DG
Sbjct:   135 KVDKLAANFWLIGLTGSIITDLRNLKISYDSNKALLNEIN-SQEKTDG 181

GO:0005779 "integral to peroxisomal membrane" evidence=ISS

GO:0007031 "peroxisome organization" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2050694 PEX11D "AT2G45740" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 6.2e-05, P = 6.2e-05
 Identities = 42/167 (25%), Positives = 79/167 (47%)

Query:    33 YLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRLKSFESSVGLSRKAFRLGKFVQD 92
             YL K +  DKL +  +Y +K +  S   P      G  ++ + S  L+RK FRL KFV D
Sbjct:    18 YLNKAEARDKLCRAIQYGSKFL--SGGQP------GTAQNVDKSTSLARKVFRLFKFVND 69

Query:    93 VNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWLAKSGLIDPKQ-SRSLQKISAW 151
             ++ L +          ++L          + F++Q +WL +SG+   K+ +  L +IS +
Sbjct:    70 LHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAELLGRISLF 129

Query:   152 AEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGDGYKEEEQR 198
               ++G   S+     ++  +    + +   IE  +  G+ Y++E+ R
Sbjct:   130 C-WMG--SSVCTTLVEVGEMGRLSSSMKK-IEKGLKNGNKYQDEDYR 172

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=IEA;IDA

GO:0016559 "peroxisome fission" evidence=IEA;ISS;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0007031 "peroxisome organization" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IDA

FB|FBgn0034058 Pex11 "Peroxin 11" [Drosophila melanogaster (taxid:7227)]

 Score = 112 (44.5 bits), Expect = 0.00015, P = 0.00015
 Identities = 35/102 (34%), Positives = 54/102 (52%)

Query:    39 GVDKLLKLSRYATKIILASSVLPETLP-LTGRLKSFESSVGLSRKAFRLGKFVQDV--NA 95
             G DK+ +L +YA++ +  S     + P L    K+ E  +   RK  R GK V DV   A
Sbjct:    13 GRDKIARLIQYASRAMWDSLESANSNPALVDNFKTVEYILSTFRKLLRFGKCV-DVFYGA 71

Query:    96 LRNSHLDSLS-REDLILSVIAYGGEGLYYFVEQFIWLAKSGL 136
             L+  H   L+ R  L LS ++   + L+ F + F+WLA++GL
Sbjct:    72 LKTIHHPDLNIRVTLTLSKLS---QSLFLFADHFLWLARTGL 110

GO:0007031 "peroxisome organization" evidence=ISS;IMP

GO:0016559 "peroxisome fission" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

TAIR|locus:2198150 PEX11C "AT1G01820" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 0.00044, P = 0.00044
 Identities = 40/167 (23%), Positives = 79/167 (47%)

Query:    33 YLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRLKSFESSVGLSRKAFRLGKFVQD 92
             YL K +  DK+ +  +Y +K +  S   P      G  ++ + +  L+RK FRL KFV D
Sbjct:    17 YLNKAEARDKICRAIQYGSKFL--SDGQP------GTAQNVDKNTSLARKVFRLFKFVND 68

Query:    93 VNALRNSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWLAKSGLI-DPKQSRSLQKISAW 151
             ++AL +          ++L          + F++Q +WL ++G+  D +++  L +IS +
Sbjct:    69 LHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDKERAEILGRISLF 128

Query:   152 AEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGDGYKEEEQR 198
               ++G   S+     ++  +    A +   +E  I   D ++ E+ R
Sbjct:   129 C-WMG--SSVCTSLVEVGELGRLSASIKK-LEKEIGNKDKHQNEQYR 171


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      235       210   0.00080  112 3  11 22  0.49    32
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  145 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.18u 0.11s 18.29t   Elapsed:  00:00:01
  Total cpu time:  18.18u 0.11s 18.29t   Elapsed:  00:00:01
  Start:  Sat May 11 12:09:23 2013   End:  Sat May 11 12:09:24 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=IEA;IDA

GO:0016559 "peroxisome fission" evidence=IEA;ISS;IMP

GO:0007031 "peroxisome organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005777 "peroxisome" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FZF1	PX11A_ARATH	No assigned EC number	0.7083	0.9106	0.8629	yes	no
A2XFQ8	PX113_ORYSI	No assigned EC number	0.5178	0.8638	0.8388	N/A	no
Q10MN2	PX113_ORYSJ	No assigned EC number	0.5178	0.8638	0.8388	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00400171 hypothetical protein (255 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	235
pfam05648	225	pfam05648, PEX11, Peroxisomal biogenesis factor 11	1e-42

>gnl|CDD|218675 pfam05648, PEX11, Peroxisomal biogenesis factor 11 (PEX11)

 Score =  143 bits (364), Expect = 1e-42
 Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 16/208 (7%)

Query: 27  LNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLP---LTGRLKSFESSVGLSRKA 83
           L+HL  +L    G DKLL+  +YA++  L +  L        L  RLK+ ES   LSRK 
Sbjct: 1   LDHLVRFLDSTVGRDKLLRTLQYASR--LLAWYLYRKGSSPELIARLKNLESQFSLSRKL 58

Query: 84  FRLGKFVQDVNALR----NSHLDSLSREDLILSVIAYGGEGLYYFVEQFIWLAKSGLIDP 139
            RLGKF++ + A      N   D + R   +L+V+   G  LY   +  +WLAK GL+  
Sbjct: 59  LRLGKFLEHLQAAAKYYDNKLPDPVLR---LLAVLRNLGYALYLPFDHILWLAKIGLLKV 115

Query: 140 KQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGDGYKEEEQRM 199
           K ++   +IS+     G + S+    R+L+ + E E  L    +           E + +
Sbjct: 116 KNAKRWSRISSRFWLFGLLLSLVRDLRELRQLQEKEKKLKKEKD----SEGESTSERKLL 171

Query: 200 KKLKAKKLMKKLSIVQDLADGLMALADI 227
           KK+  K+    L +V++L D  +AL  +
Sbjct: 172 KKILKKRPAALLDLVKNLCDLFIALNSL 199

This family consists of several peroxisomal biogenesis factor 11 (PEX11) proteins from several eukaryotic species. The PEX11 peroxisomal membrane proteins promote peroxisome division in multiple eukaryotes. Length = 225

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
PF05648	223	PEX11: Peroxisomal biogenesis factor 11 (PEX11)	100.0
KOG4186	233	consensus Peroxisomal biogenesis protein (peroxin)	100.0

>PF05648 PEX11: Peroxisomal biogenesis factor 11 (PEX11)

Probab=100.00  E-value=4e-39  Score=272.91  Aligned_cols=195  Identities=28%  Similarity=0.440  Sum_probs=166.1

Q ss_pred             HHHHHHHhcCcchHHHHHHHHHHHHHHHHhcccCC-CChhHhHHHHHHHHhhhhHHHHHHhccchHHHHHHHhcccCCC-
Q 039694           27 LNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLP-ETLPLTGRLKSFESSVGLSRKAFRLGKFVQDVNALRNSHLDSL-  104 (235)
Q Consensus        27 l~~~~~~l~t~~GRDK~lR~lQY~s~l~~~~~~~~-~~~~~~~~~~~l~~~ls~aRk~fRl~k~l~~l~~l~~~~~~~~-  104 (235)
                      |+++++|+++++||||++|++||+++|++|++.+. ++++..++++++++++|++||+||+||++++++.+.+....+. 
T Consensus         1 l~~~~~~l~~~~GrDK~~r~~qy~~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~aRk~~Rl~k~l~~l~~~~~~~~~~~~   80 (223)
T PF05648_consen    1 LDHFVRFLSSTDGRDKLLRLLQYSSKFLAWYLARRGPSKELSKRLKALSSQLSDARKLFRLGKFLPMLQAARKYIKKKPS   80 (223)
T ss_pred             CHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHhhhHHHHHHHHccHHHHHHHHHhhccCCc
Confidence            58999999999999999999999999999988654 3678899999999999999999999999999997765422221 


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 039694          105 SREDLILSVIAYGGEGLYYFVEQFIWLAKSGLIDPKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEI  184 (235)
Q Consensus       105 ~~~~~~l~~l~~~~~~~Y~~~D~i~wl~~~gi~~~~~~~~~~~~s~~fWl~~lv~si~~~~~~L~~l~~~e~~l~~~~~~  184 (235)
                      ......+.+++++++++|+++||++|++++|+++.+..+++.++|++||++++++++++++++++.+.+++++.++..  
T Consensus        81 d~~~~~l~~l~~~~~~~y~~~D~~~wl~~~gl~~~~~~~~~~~~s~~~W~~~l~~~l~~~~~~l~~~~~~~~~~~~~~--  158 (223)
T PF05648_consen   81 DQVLRILEILSNLFMFLYYLLDNLVWLSKLGLLPNKSKKKWSRWSNRFWFASLVLSLVRDLRELRRLRQKERSLKKQL--  158 (223)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--
Confidence            124567777889999999999999999999999998766999999999999999999999999999988877765432  


Q ss_pred             HhhcCCCchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhccc
Q 039694          185 AISRGDGYKEEEQRMKKLKAKKLMKKLSIVQDLADGLMALADI  227 (235)
Q Consensus       185 ~~~~~~~~~~~~~~l~~l~~~r~~~~l~lv~d~~D~~i~~~~i  227 (235)
                          .++++.++.++++++++++...+++++|+||+++|++++
T Consensus       159 ----~~~~~~~~~~l~~~~~~~~~~~l~lv~~~~D~~~~~~~l  197 (223)
T PF05648_consen  159 ----KEKDENEEEKLKKLRKERRALLLDLVKNLCDLIIAVHWL  197 (223)
T ss_pred             ----ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                111222233467889999999999999999999999998

>KOG4186 consensus Peroxisomal biogenesis protein (peroxin) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.6e-34  Score=239.29  Aligned_cols=199  Identities=24%  Similarity=0.316  Sum_probs=159.0

Q ss_pred             HHHHHHHhcCcchHHHHHHHHHHHHHHHHhcccCCCChhHhHHHHHHHHhhhhHHHHHHhccchHHHHHHHhc---ccCC
Q 039694           27 LNHLEAYLAKRDGVDKLLKLSRYATKIILASSVLPETLPLTGRLKSFESSVGLSRKAFRLGKFVQDVNALRNS---HLDS  103 (235)
Q Consensus        27 l~~~~~~l~t~~GRDK~lR~lQY~s~l~~~~~~~~~~~~~~~~~~~l~~~ls~aRk~fRl~k~l~~l~~l~~~---~~~~  103 (235)
                      +|++++|+++++||||+||.+||.|+|++|++. .++|+++++++++++++|.+||+||+||++++++++.+.   +.++
T Consensus         1 ~d~lv~~ln~~~gRDKl~RalQY~akll~~~l~-~~~p~~a~~~~kles~~S~~RK~~Rl~k~l~~~~~~~~~~~~~~~~   79 (233)
T KOG4186|consen    1 LDHLVRFLNSAAGRDKLCRALQYVAKLLSWHLE-AGSPELAKRLKKLESQLSLARKVLRLGKDLNMFQAALQYGLVPLGT   79 (233)
T ss_pred             CcHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhc-cCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccCCCCC
Confidence            479999999999999999999999999999887 468999999999999999999999999999999966554   2222


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039694          104 LSREDLILSVIAYGGEGLYYFVEQFIWLAKSGLIDPKQSRSLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIE  183 (235)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~Y~~~D~i~wl~~~gi~~~~~~~~~~~~s~~fWl~~lv~si~~~~~~L~~l~~~e~~l~~~~~  183 (235)
                      . .+.+++.+++|+.+.+|+++||+.|++++|+++.+. ++|...+...|.+++..++.++++++..+++ .++-....+
T Consensus        80 ~-~~lr~~~~l~n~~~~~Y~~~D~v~Wl~~~gi~~~~~-~~~~~~~~~~w~~sl~l~~~r~~~~~~~~~r-~~~~~k~~~  156 (233)
T KOG4186|consen   80 D-NVLRLLGVLKNLAFALYLFLDHVLWLARTGIIPVKS-ERWKISRISLWLLSLGLNLCRDMYEVFELQR-LSSSIKKKT  156 (233)
T ss_pred             c-chhhHHHHHhHHHHHHHHHHHHHHHHHHhCCcccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccccccc
Confidence            2 136788888999999999999999999999999985 8999999999999999999999999555432 221111111


Q ss_pred             HHhhcCCCchHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHhhccccCCC
Q 039694          184 IAISRGDGYKEEEQRMKKLKA--KKLMKKLSIVQDLADGLMALADIRDGK  231 (235)
Q Consensus       184 ~~~~~~~~~~~~~~~l~~l~~--~r~~~~l~lv~d~~D~~i~~~~i~~~~  231 (235)
                      .+.++  .++++.+.+++.+.  .++.+.++..++.||..+|.+.+..++
T Consensus       157 ~~~~~--~~e~~~~~l~~~~~~~~~~~l~l~~~~~~~~~~ipl~~L~~~k  204 (233)
T KOG4186|consen  157 KSISS--GDEEDREKLQAQQLDQNHRLLLLSADFNAADSALPLGQLGPGK  204 (233)
T ss_pred             cCCCC--ccHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhhhccCcCc
Confidence            10111  12333444555444  488899999999999999998887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	235
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 39/250 (15%), Positives = 80/250 (32%), Gaps = 63/250 (25%)

Query: 22  KDRDF---LNHLEAYLAKRDGVDKLLK--------------LSRYATKII---------- 54
            + D     +  ++ L+K + +D ++               L     +++          
Sbjct: 31  DNFDCKDVQDMPKSILSKEE-IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89

Query: 55  ----LASSVLPETLPLTGRLKSFESSVG-LSRKAFRLGKF----VQDVNALRNSHLDSLS 105
               L S +  E    +   + +      L        K+    +Q    LR   L  L 
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ-ALLELR 148

Query: 106 REDLILSVIAYG--GEGLYYFVEQFIWLAKSGLIDPK-QSRSLQKISAWAEFIGYIGSIS 162
                  V+  G  G G     +   W+A    +  K Q +   KI  W        S  
Sbjct: 149 PAKN---VLIDGVLGSG-----KT--WVALDVCLSYKVQCKMDFKI-FWLNL-KNCNSP- 195

Query: 163 LKFRDLKMILEDEACLASTIEIA-ISRGDGYKEEEQRMKKLKAKKLMKKLSIVQDLADGL 221
                +  +L+    L   I+    SR D     + R+  ++A+   ++L   +   + L
Sbjct: 196 ---ETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAEL--RRLLKSKPYENCL 247

Query: 222 MALADIRDGK 231
           + L ++++ K
Sbjct: 248 LVLLNVQNAK 257

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 3e-05
 Identities = 33/264 (12%), Positives = 73/264 (27%), Gaps = 78/264 (29%)

Query: 1   MDP---SKASTALAPSKSSTDSKPKDRDFL---NHLEAYLAKRD--------GVD---KL 43
           +DP   S++  +          + + R  L    +    L   +          +   K+
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 44  LKLSRYATKIILASSVLPETLPLTGRLKSFES--SVGLSRKAFRLGKFVQDVNALRNSHL 101
           L  +R+       S+     + L     +        L      L K++       +   
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL------LLKYL-------DCRP 315

Query: 102 DSLSRED-----LILSVIAYGGEGL-----------YYFVEQFIWLAKSGL--IDPKQSR 143
             L RE        LS+I    E +           +   ++   + +S L  ++P + R
Sbjct: 316 QDLPREVLTTNPRRLSII---AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 144 SLQKISAWAEFIGYIGSISLKFRDLKMILEDEACLASTIEIAISRGDGYKEEEQRMKKLK 203
            +                   F  L +           + + I       +    + KL 
Sbjct: 373 KM-------------------FDRLSVFPPSAHIPTILLSL-IWFDVIKSDVMVVVNKLH 412

Query: 204 AKKLMKKLSIVQDLADGLMALADI 227
              L++K        +  +++  I
Sbjct: 413 KYSLVEK-----QPKESTISIPSI 431

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00