Citrus Sinensis ID: 039697

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50----
Protein Sequence
MEKRFSLIQTIATAAAFSAVTAWYGFMFGRESARKDLEHLIEDLKRGNSPPPHS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccEHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MEKRFSLIQTIATAAAFSAVTAWYGFMFGRESARKDLEHLIEDlkrgnsppphs
Flexible Loop (DISEMBL)
MEKRFSLIQTIATAAAFSAVTAWYGFMFGRESARKDLEHLIedlkrgnsppphs
Low Complexity Region (SEG)
MEKRFSLIQtiataaafsavtaWYGFMFGRESARKDLEHLIEDLKRGNSPPPHS
Disordered region (IsUnstruct)
****FSLIQTIATAAAFSAVTAWYGFMFGRE***********************
Disordered Region (DISOPRED)
****FSL*QTIATAAAFSAVTAWYGFMFGRESARKDLE****************
Disordered Region (DISEMBL)
MEKRFSLIQTIATAAAFSAVTAWYGFMFGRESARKDLEHLIEDL**********
Disordered Region (DISPRO)
**KRFSLIQTIATAAAFSAVTAWYGFMFGRESARKDLEHLIEDLKR********
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEKRFSLIQTIATAAAFSAVTAWYGFMFGRESARKDLEHLIEDLKRGNSPPPHS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	54
449461285	60	PREDICTED: uncharacterized protein LOC10	1.0	0.9	0.666	5e-14
356563420	57	PREDICTED: uncharacterized protein LOC10	0.962	0.912	0.666	6e-14
297804476	57	hypothetical protein ARALYDRAFT_329817 [	1.0	0.947	0.649	1e-13
145333243	57	Putative membrane lipoprotein [Arabidops	1.0	0.947	0.649	3e-13
356511143	59	PREDICTED: uncharacterized protein LOC10	0.962	0.881	0.634	5e-13
255552938	58	conserved hypothetical protein [Ricinus	0.870	0.810	0.744	8e-13
224126589	63	predicted protein [Populus trichocarpa]	0.888	0.761	0.687	2e-12
225427368	57	PREDICTED: uncharacterized protein LOC10	0.981	0.929	0.642	4e-11
125556747	70	hypothetical protein OsI_24457 [Oryza sa	0.851	0.657	0.608	1e-09
357123743	65	PREDICTED: uncharacterized protein LOC10	0.870	0.723	0.574	3e-09

>gi|449461285|ref|XP_004148372.1| PREDICTED: uncharacterized protein LOC101212897 [Cucumis sativus] gi|449530889|ref|XP_004172424.1| PREDICTED: uncharacterized LOC101212897 [Cucumis sativus]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 46/60 (76%), Gaps = 6/60 (10%)

Query: 1  MEKRFSLIQTIATAAAFSAVTAWYGFMFGRESARKDLEHLIEDLKRGNSPP------PHS 54
          M K F+LIQT+ATA AFSA++ WYGFMFGRESARKDL  LI+DL+RG S P      PHS
Sbjct: 1  MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS 60

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563420|ref|XP_003549961.1| PREDICTED: uncharacterized protein LOC100787508 [Glycine max]

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 45/54 (83%), Gaps = 2/54 (3%)

Query: 1  MEKRFSLIQTIATAAAFSAVTAWYGFMFGRESARKDLEHLIEDLKRG--NSPPP 52
          MEK+ +L+QTIATA  FSA++ WYGFMFGRES+RK+L  LIEDL+ G  N+PPP
Sbjct: 1  MEKKMTLVQTIATAGVFSAISFWYGFMFGRESSRKELSQLIEDLRHGGENTPPP 54

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804476|ref|XP_002870122.1| hypothetical protein ARALYDRAFT_329817 [Arabidopsis lyrata subsp. lyrata] gi|297315958|gb|EFH46381.1| hypothetical protein ARALYDRAFT_329817 [Arabidopsis lyrata subsp. lyrata]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 45/57 (78%), Gaps = 3/57 (5%)

Query: 1  MEKRFSLIQTIATAAAFSAVTAWYGFMFGRESARKDLEHLIEDLKRGNS---PPPHS 54
          M+K F+LIQT+A +  FSAV+ WYGFMFGRESARK+L  LIE+L+RG S    PPHS
Sbjct: 1  MQKSFTLIQTVAISGVFSAVSCWYGFMFGRESARKELGGLIEELRRGGSNSDSPPHS 57

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145333243|ref|NP_001078401.1| Putative membrane lipoprotein [Arabidopsis thaliana] gi|110736818|dbj|BAF00368.1| hypothetical protein [Arabidopsis thaliana] gi|332658447|gb|AEE83847.1| Putative membrane lipoprotein [Arabidopsis thaliana]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 44/57 (77%), Gaps = 3/57 (5%)

Query: 1  MEKRFSLIQTIATAAAFSAVTAWYGFMFGRESARKDLEHLIEDLKRGNS---PPPHS 54
          M+K FSLIQT+A +  FSAV+ WYGFMFGRESARK+L  LIE+L+RG S     PHS
Sbjct: 1  MQKSFSLIQTVAISGVFSAVSCWYGFMFGRESARKELGGLIEELRRGGSNSDSTPHS 57

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511143|ref|XP_003524289.1| PREDICTED: uncharacterized protein LOC100814347 [Glycine max]

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 42/52 (80%)

Query: 1  MEKRFSLIQTIATAAAFSAVTAWYGFMFGRESARKDLEHLIEDLKRGNSPPP 52
          MEK+ +L+QTIATA  FSA++ WYGFMFGRES+RK+L  LI+DL+ G   PP
Sbjct: 1  MEKKITLVQTIATAGVFSAISFWYGFMFGRESSRKELSDLIQDLRHGGGNPP 52

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552938|ref|XP_002517512.1| conserved hypothetical protein [Ricinus communis] gi|223543523|gb|EEF45054.1| conserved hypothetical protein [Ricinus communis]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 41/47 (87%)

Query: 1  MEKRFSLIQTIATAAAFSAVTAWYGFMFGRESARKDLEHLIEDLKRG 47
          M+K FSL+QT+ATA  FSAV+ WYGFMFGRESARK+L  LIEDL+RG
Sbjct: 1  MQKTFSLLQTVATAGVFSAVSFWYGFMFGRESARKELGDLIEDLRRG 47

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126589|ref|XP_002329592.1| predicted protein [Populus trichocarpa] gi|222870301|gb|EEF07432.1| predicted protein [Populus trichocarpa]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/48 (68%), Positives = 40/48 (83%)

Query: 1  MEKRFSLIQTIATAAAFSAVTAWYGFMFGRESARKDLEHLIEDLKRGN 48
          M + F+L+QT+ TA  FSAV+ WYGFMFGRESARK+L  LIEDL+RGN
Sbjct: 1  MGRSFTLVQTVTTAGVFSAVSYWYGFMFGRESARKELGDLIEDLRRGN 48

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427368|ref|XP_002282894.1| PREDICTED: uncharacterized protein LOC100242112 [Vitis vinifera] gi|297742191|emb|CBI33978.3| unnamed protein product [Vitis vinifera]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 42/56 (75%), Gaps = 3/56 (5%)

Query: 1  MEKRFSLIQTIATAAAFSAVTAWYGFMFGRESARKDLEHLIEDLKR---GNSPPPH 53
          M K F+LIQT+ATA  FSAV+ WYGFM GRESARK+L  LIEDL+R    +S  PH
Sbjct: 1  MAKGFTLIQTVATAGVFSAVSFWYGFMIGRESARKELSELIEDLRRQIPDSSSHPH 56

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125556747|gb|EAZ02353.1| hypothetical protein OsI_24457 [Oryza sativa Indica Group]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 37/46 (80%)

Query: 3  KRFSLIQTIATAAAFSAVTAWYGFMFGRESARKDLEHLIEDLKRGN 48
          K+ +L+QT+A A  FSAV+ WYGFMFGRESAR++L  +IEDL+ G 
Sbjct: 5  KKITLLQTVAFAGVFSAVSCWYGFMFGRESARRELGGIIEDLRSGG 50

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357123743|ref|XP_003563567.1| PREDICTED: uncharacterized protein LOC100837547 [Brachypodium distachyon]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 38/47 (80%)

Query: 3  KRFSLIQTIATAAAFSAVTAWYGFMFGRESARKDLEHLIEDLKRGNS 49
          K+ +L+QT+A A  FSAV+ WYGFMFGRESAR++L  +I+DL+  +S
Sbjct: 4  KKLTLLQTVAAAGVFSAVSCWYGFMFGRESARRELGGIIDDLRNSSS 50

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	54
TAIR|locus:4010713891	57	AT4G17085 "AT4G17085" [Arabido	1.0	0.947	0.543	5.2e-10

TAIR|locus:4010713891 AT4G17085 "AT4G17085" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 31/57 (54%), Positives = 35/57 (61%)

Query:     1 MEKRFSLIQXXXXXXXXXXXXXWYGFMFGRESARKDLEHLIEDLKRGNS---PPPHS 54
             M+K FSLIQ             WYGFMFGRESARK+L  LIE+L+RG S     PHS
Sbjct:     1 MQKSFSLIQTVAISGVFSAVSCWYGFMFGRESARKELGGLIEELRRGGSNSDSTPHS 57


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.139   0.440    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       54        41   0.00091  102 3  11 22  0.41    26
                                                     29  0.39    24


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  384 (41 KB)
  Total size of DFA:  64 KB (2060 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.16u 0.13s 6.29t   Elapsed:  00:00:01
  Total cpu time:  6.16u 0.13s 6.29t   Elapsed:  00:00:01
  Start:  Sat May 11 12:19:18 2013   End:  Sat May 11 12:19:19 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh1_pm.C_scaffold_7002044 annotation not avaliable (57 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	54
TIGR01708	143	typeII_sec_gspH general secretion pathway protein	91.74
COG2165	149	PulG Type II secretory pathway, pseudopilin PulG [	90.43
PRK10506	162	hypothetical protein; Provisional	88.92
PF00918	116	Gastrin: Gastrin/cholecystokinin family; InterPro:	88.07
PRK11469	188	hypothetical protein; Provisional	85.05
PF10960	71	DUF2762: Protein of unknown function (DUF2762); In	84.97
TIGR01710	134	typeII_sec_gspG general secretion pathway protein	83.65
PF08846	68	DUF1816: Domain of unknown function (DUF1816); Int	81.8
TIGR01711	192	gspJ general secretion pathway protein J. Both Gsp	81.28

>TIGR01708 typeII_sec_gspH general secretion pathway protein H

Probab=91.74  E-value=0.64  Score=28.06  Aligned_cols=44  Identities=20%  Similarity=0.234  Sum_probs=25.8

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHh
Q 039697            2 EKRFSLIQTIATAAAFSAVTAWYGFMFG----RESARKDLEHLIEDLK   45 (54)
Q Consensus         2 ~k~~tL~QTvatagvFSAvs~WYGFMfG----RESaRkeL~~lIedLr   45 (54)
                      ++.|||+..+.+-.+++.++..--..+.    +-..+++..++..+|+
T Consensus         3 ~~GFTLiEllvvlaIiail~~~~~~~~~~~~~~~~~~~~a~~l~~~l~   50 (143)
T TIGR01708         3 QSGFTLIELLVVLAIMGLVAAAAALSLVSHYGTKSLDQVAGRLAARLR   50 (143)
T ss_pred             CCcEEHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            5789999988777766655544434433    3344444444444443

This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=90.43  E-value=1.5  Score=24.63  Aligned_cols=21  Identities=19%  Similarity=0.401  Sum_probs=15.2

Q ss_pred             CcchhHHHHHHHHHHHHHHHH
Q 039697            1 MEKRFSLIQTIATAAAFSAVT   21 (54)
Q Consensus         1 m~k~~tL~QTvatagvFSAvs   21 (54)
                      +++.||||..+..-.+++.++
T Consensus         6 ~qrGFTLiElLVvl~Iigil~   26 (149)
T COG2165           6 KQRGFTLIELLVVLAIIGILA   26 (149)
T ss_pred             ccCCcchHHHHHHHHHHHHHH
Confidence            357899999887766666544

>PRK10506 hypothetical protein; Provisional

Probab=88.92  E-value=1.6  Score=27.70  Aligned_cols=30  Identities=20%  Similarity=0.423  Sum_probs=22.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039697            2 EKRFSLIQTIATAAAFSAVTAWYGFMFGRE   31 (54)
Q Consensus         2 ~k~~tL~QTvatagvFSAvs~WYGFMfGRE   31 (54)
                      ++.|||+.++.+-.+.+.+..+-..-|..-
T Consensus         8 ~~GFTLiEllvvl~Ii~il~~~a~p~~~~~   37 (162)
T PRK10506          8 QRGYTLIELLVVMTIVSILSAWGLYGWQRW   37 (162)
T ss_pred             CCCeeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            458999999888888877776655555543

>PF00918 Gastrin: Gastrin/cholecystokinin family; InterPro: IPR001651 Gastrin and cholecystokinin (CCK) are structurally and functionally related peptide hormones that function as hormonal regulators of various digestive processes and feeding behaviors

Probab=88.07  E-value=0.099  Score=33.21  Aligned_cols=12  Identities=58%  Similarity=1.088  Sum_probs=9.6

Q ss_pred             HHHH-hhhhhHHH
Q 039697           24 YGFM-FGRESARK   35 (54)
Q Consensus        24 YGFM-fGRESaRk   35 (54)
                      .|+| |||-||..
T Consensus        99 ~GWMDFGRRSAEE  111 (116)
T PF00918_consen   99 MGWMDFGRRSAEE  111 (116)
T ss_pred             Ccccccccccccc
Confidence            3988 99999853

They are known to induce gastric secretion, stimulate pancreatic secretion, increase blood circulation and water secretion in the stomach and intestine, and stimulate smooth muscle contraction. Originally found in the gut, these hormones have since been shown to be present in various parts of the nervous system. Like many other active peptides they are synthesized as larger protein precursors that are enzymatically converted to their mature forms. They are found in several molecular forms due to tissue-specific post-translational processing. The biological activity of gastrin and CCK is associated with the last five C-terminal residues. One or two positions downstream, there is a conserved sulphated tyrosine residue. The amphibian caerulein skin peptide, the cockroach leukosulphakinin I and II (LSK) peptides, Drosophila melanogaster (Fruit fly) putative CCK-homologs Drosulphakinins I and II, cionin, a Gallus gallus (Chicken) gastrin/cholecystokinin-like peptide and cionin, a neuropeptide from the protochordate Ciona intestinalis belong to the same family.; GO: 0005179 hormone activity, 0005576 extracellular region

>PRK11469 hypothetical protein; Provisional

Probab=85.05  E-value=3.7  Score=27.28  Aligned_cols=27  Identities=22%  Similarity=0.335  Sum_probs=24.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039697            5 FSLIQTIATAAAFSAVTAWYGFMFGRE   31 (54)
Q Consensus         5 ~tL~QTvatagvFSAvs~WYGFMfGRE   31 (54)
                      +..+.|....|+++.+.+|-|+..||-
T Consensus       131 ~~~~~~~~~ig~~s~~~~~~G~~lG~~  157 (188)
T PRK11469        131 VNIIATALAIGCATLIMSTLGMMVGRF  157 (188)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999993

>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli

Probab=84.97  E-value=3.3  Score=24.71  Aligned_cols=28  Identities=18%  Similarity=0.396  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 039697            6 SLIQTIATAAAFSAVTAWYGFMFGRESA   33 (54)
Q Consensus         6 tL~QTvatagvFSAvs~WYGFMfGRESa   33 (54)
                      .+++.+++=|+|++..+|-=|-.=++|-
T Consensus         4 ei~k~~~sQG~fA~LFv~Ll~yvlK~~~   31 (71)
T PF10960_consen    4 EIIKLALSQGIFAVLFVWLLFYVLKENK   31 (71)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHHhH
Confidence            3678889999999999999998888887

A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].

>TIGR01710 typeII_sec_gspG general secretion pathway protein G

Probab=83.65  E-value=4.6  Score=24.90  Aligned_cols=19  Identities=11%  Similarity=0.394  Sum_probs=13.6

Q ss_pred             chhHHHHHHHHHHHHHHHH
Q 039697            3 KRFSLIQTIATAAAFSAVT   21 (54)
Q Consensus         3 k~~tL~QTvatagvFSAvs   21 (54)
                      |.|||+..+..-.+++.+.
T Consensus         1 ~GFTLiEllivlaIigil~   19 (134)
T TIGR01710         1 RGFTLLEIMVVLVILGLLA   19 (134)
T ss_pred             CceeHHHHHHHHHHHHHHH
Confidence            4699999877766665553

This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes

Probab=81.80  E-value=0.35  Score=29.12  Aligned_cols=30  Identities=33%  Similarity=0.451  Sum_probs=26.5

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Q 039697           20 VTAWYGFMFGRESARKDLEHLIEDLKRGNS   49 (54)
Q Consensus        20 vs~WYGFMfGRESaRkeL~~lIedLr~g~~   49 (54)
                      +.+|||=...+++|...+.+-||||.+-++
T Consensus        21 ctYyFGPF~s~~eA~~~~~gyieDL~~Ega   50 (68)
T PF08846_consen   21 CTYYFGPFDSREEAEAALPGYIEDLESEGA   50 (68)
T ss_pred             EEEEeCCcCCHHHHHHHhccHHHHHHhhCc
Confidence            457899999999999999999999998655

>TIGR01711 gspJ general secretion pathway protein J

Probab=81.28  E-value=6.4  Score=25.79  Aligned_cols=20  Identities=20%  Similarity=0.551  Sum_probs=16.5

Q ss_pred             chhHHHHHHHHHHHHHHHHH
Q 039697            3 KRFSLIQTIATAAAFSAVTA   22 (54)
Q Consensus         3 k~~tL~QTvatagvFSAvs~   22 (54)
                      +.||||+.+.+-++|+.++.
T Consensus         1 ~GFTLiEllval~I~ail~~   20 (192)
T TIGR01711         1 RGFTLLELLVAIAIFASLSL   20 (192)
T ss_pred             CCccHHHHHHHHHHHHHHHH
Confidence            57999999988888887764

Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	54
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	80.77

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=80.77  E-value=0.59  Score=26.51  Aligned_cols=26  Identities=27%  Similarity=0.471  Sum_probs=22.5

Q ss_pred             hhhhhHHHHHHHHHHHHhcCCCCCCC
Q 039697           28 FGRESARKDLEHLIEDLKRGNSPPPH   53 (54)
Q Consensus        28 fGRESaRkeL~~lIedLr~g~~~~ph   53 (54)
                      .|.|.+.++|..+|+..+.++.++||
T Consensus        12 vGq~~~~~~L~~~i~~~~~~~~~~~~   37 (239)
T d1ixsb2          12 IGQERLKQKLRVYLEAAKARKEPLEH   37 (239)
T ss_dssp             CSCHHHHHHHHHHHHHHTTSSSCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCe
Confidence            58899999999999998887777766