Citrus Sinensis ID: 039703

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
MKKPNHTSDNISQNPSASSKITFPPRKIRKLTTITPITKIAEIPVATAISTNSDNSPKIFKPLTFKGEVDIALRHLRDKDPLLATLIDAHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILPDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPGALKMEEVCEKWKPYRSVGSWYMWRLMEAKGVLPNVAKAAVTSVEAA
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccHHHHHHccccHHHHHHHHHHHHHHHccccccHHHccccHHHHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccc
cccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcccHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHccccc
mkkpnhtsdnisqnpsasskitfpprkirklttitpitkiaeipvataistnsdnspkifkpltfkGEVDIALRHLRDKDPLLATlidahrpptfessrspfLSLAKSILYQQLAYKAAKSIYTRFVALFngednilpdavlavsPQQLREIGVSYRKASYLRDLAEKytdgilsdesiveMDDVTMFKMLTSVKGIGAWSVHMFMIFSlhkpdvlpvgdlgvrkGLQVLYGlkelpgalkMEEVCekwkpyrsvGSWYMWRLMEAKGVLPNVAKAAVTSVEAA
mkkpnhtsdnisqnpsasskitfpprkirklttitpitkiaeipvataistnsdnspkiFKPLTFKGEVDIALRHLRDKDPLLATLIDahrpptfessrsPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILPDAVLAVSPQQLREIGVSYRKASYLRDLAEKytdgilsdesiVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLkelpgalkmeevcekwkpyRSVGSWYMWRLMEAKGVLPNVAKAAVTSVEAA
MKKPNHTSDNISQNPSASSKITFPPRKIRKLTTITPITKIAEIPVATAISTNSDNSPKIFKPLTFKGEVDIALRHLRDKDPLLATLIDAHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILPDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPGALKMEEVCEKWKPYRSVGSWYMWRLMEAKGVLPNVAKAAVTSVEAA
**************************KIRKLTTITPITKIAEIPVATAISTN****PKIFKPLTFKGEVDIALRHLRDKDPLLATLIDAH**********PFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILPDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPGALKMEEVCEKWKPYRSVGSWYMWRLMEAKGVLPNVAKA********
**********************************************************IFKPLTFKGEVDIALRHLRDKDPLLATLIDAHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILPDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPGALKMEEVCEKWKPYRSVGSWYMWRLMEAKGV***************
********************ITFPPRKIRKLTTITPITKIAEIPVATAISTNSDNSPKIFKPLTFKGEVDIALRHLRDKDPLLATLIDAHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILPDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPGALKMEEVCEKWKPYRSVGSWYMWRLMEAKGVLPNVAKAAVTSVEAA
*********************TFPPRKIRKLTTI**********************PKIFKPLTFKGEVDIALRHLRDKDPLLATLIDAHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILPDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPGALKMEEVCEKWKPYRSVGSWYMWRLMEAKGVLPNVAKAAVTSVEA*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKKPNHTSDNISQNPSASSKITFPPRKIRKLTTITPITKIAEIPVATAISTNSDNSPKIFKPLTFKGEVDIALRHLRDKDPLLATLIDAHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILPDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPGALKMEEVCEKWKPYRSVGSWYMWRLMEAKGVLPNVAKAAVTSVEAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query284 2.2.26 [Sep-21-2011]
Q92383228 DNA-3-methyladenine glyco yes no 0.676 0.842 0.311 8e-26
O31544287 Putative DNA-3-methyladen yes no 0.644 0.637 0.281 5e-20
O94468213 Probable DNA-3-methyladen no no 0.676 0.901 0.25 3e-18
P22134296 DNA-3-methyladenine glyco yes no 0.661 0.635 0.304 7e-16
P37878303 DNA-3-methyladenine glyco no no 0.573 0.537 0.255 2e-12
Q10630496 Probable bifunctional tra yes no 0.549 0.314 0.268 2e-07
P04395282 DNA-3-methyladenine glyco N/A no 0.507 0.510 0.230 0.0001
>sp|Q92383|MAG1_SCHPO DNA-3-methyladenine glycosylase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mag1 PE=1 SV=1 Back     alignment and function desciption
 Score =  117 bits (294), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 107/199 (53%), Gaps = 7/199 (3%)

Query: 68  EVDIALRHLRDKDPLLATLIDAHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFV 127
           + +I L  L +    L  L+  +RP      + P+  L +++  QQL  KAA +I+ RF 
Sbjct: 17  KAEIHLSGLDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRFK 76

Query: 128 ALFNGEDNILPDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGIL-SDESIVEMDDVT 186
           ++ N      P+ +  +  + +R  G S RK   L+ +AE    G++ + E    + +  
Sbjct: 77  SISNNGQFPTPEEIRDMDFEIMRACGFSARKIDSLKSIAEATISGLIPTKEEAERLSNEE 136

Query: 187 MFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPG---ALKME 243
           + + LT +KGIG W+V M +IFSL++ DV+P  DL +R G + L+ L ++P     LK  
Sbjct: 137 LIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPKIPTKMYVLKHS 196

Query: 244 EVCEKWKPYRSVGSWYMWR 262
           E+C    P+R+  +WY+W+
Sbjct: 197 EIC---APFRTAAAWYLWK 212
Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine or 7-methyladenine from the damaged DNA polymer formed by alkylation lesions. Can release ethylated and propylated bases from DNA in addition to 3-methyladenine.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: 2EC: 1
>sp|O31544|YFJP_BACSU Putative DNA-3-methyladenine glycosylase YfjP OS=Bacillus subtilis (strain 168) GN=yfjP PE=3 SV=1 Back     alignment and function description
>sp|O94468|MAG2_SCHPO Probable DNA-3-methyladenine glycosylase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mag2 PE=1 SV=1 Back     alignment and function description
>sp|P22134|MAG_YEAST DNA-3-methyladenine glycosylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAG1 PE=1 SV=1 Back     alignment and function description
>sp|P37878|3MGA_BACSU DNA-3-methyladenine glycosylase OS=Bacillus subtilis (strain 168) GN=alkA PE=1 SV=1 Back     alignment and function description
>sp|Q10630|ALKA_MYCTU Probable bifunctional transcriptional activator/DNA repair enzyme AlkA OS=Mycobacterium tuberculosis GN=alkA PE=3 SV=1 Back     alignment and function description
>sp|P04395|3MG2_ECOLI DNA-3-methyladenine glycosylase 2 OS=Escherichia coli (strain K12) GN=alkA PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
225430742329 PREDICTED: DNA-3-methyladenine glycosyla 0.919 0.793 0.633 2e-95
147792215353 hypothetical protein VITISV_009035 [Viti 0.968 0.779 0.623 1e-94
255561124280 DNA-3-methyladenine glycosylase, putativ 0.862 0.875 0.624 3e-87
302142502351 unnamed protein product [Vitis vinifera] 0.873 0.706 0.603 5e-87
225458267363 PREDICTED: DNA-3-methyladenine glycosyla 0.933 0.730 0.578 8e-87
356510199374 PREDICTED: probable DNA-3-methyladenine 0.926 0.703 0.561 3e-85
356518850351 PREDICTED: DNA-3-methyladenine glycosyla 0.908 0.735 0.552 1e-84
255644446351 unknown [Glycine max] 0.904 0.732 0.554 1e-84
255538662369 DNA-3-methyladenine glycosylase, putativ 0.915 0.704 0.560 4e-84
224066215381 predicted protein [Populus trichocarpa] 0.929 0.692 0.562 5e-84
>gi|225430742|ref|XP_002266618.1| PREDICTED: DNA-3-methyladenine glycosylase 1 [Vitis vinifera] gi|297735147|emb|CBI17509.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 176/278 (63%), Positives = 212/278 (76%), Gaps = 17/278 (6%)

Query: 7   TSDNISQNPSASSKITFPPRKIRKLTTITPITKIAEIPVATAISTNSDNSPKIFKPLTFK 66
           T+D+IS   S+SSK+ F  RKIRK+++            AT   ++  + P    PL+ +
Sbjct: 33  TADDISLQASSSSKLPFRSRKIRKISS-----------AATPSGSDGKSEP----PLSCE 77

Query: 67  GEVDIALRHLRDKDPLLATLIDAHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRF 126
           GE+D+ALRHL   DPLLA LI+ H+PPTF+S   PFL+LAKSILYQQLAYKAA SIYTRF
Sbjct: 78  GELDVALRHLTKSDPLLAALINTHQPPTFDSCHPPFLALAKSILYQQLAYKAATSIYTRF 137

Query: 127 VALFNGEDNILPDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVT 186
           VAL  GE  ++PDAVLA+SP QLR+IGVS RKA YL DLA KY  GILSD SI+ MDD +
Sbjct: 138 VALCGGEAGVVPDAVLALSPSQLRQIGVSGRKAGYLHDLASKYKTGILSDSSIMGMDDKS 197

Query: 187 MFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPGALKMEEVC 246
           +F MLT VKGIG+WSVHMFMIFSLH+PDVLPVGD+GVRKG+Q LYGL+ELP   +ME++C
Sbjct: 198 LFTMLTMVKGIGSWSVHMFMIFSLHRPDVLPVGDVGVRKGVQFLYGLEELPRPSQMEQLC 257

Query: 247 EKWKPYRSVGSWYMWRLMEAKGVLPNVAKAAVTSVEAA 284
           EKWKPYRSVGSWYMWR +EAKG  P  A+AAV  V+ A
Sbjct: 258 EKWKPYRSVGSWYMWRFVEAKGAPP--ARAAVALVDGA 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147792215|emb|CAN72984.1| hypothetical protein VITISV_009035 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255561124|ref|XP_002521574.1| DNA-3-methyladenine glycosylase, putative [Ricinus communis] gi|223539252|gb|EEF40845.1| DNA-3-methyladenine glycosylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302142502|emb|CBI19705.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225458267|ref|XP_002282344.1| PREDICTED: DNA-3-methyladenine glycosylase 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356510199|ref|XP_003523827.1| PREDICTED: probable DNA-3-methyladenine glycosylase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356518850|ref|XP_003528090.1| PREDICTED: DNA-3-methyladenine glycosylase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|255644446|gb|ACU22727.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255538662|ref|XP_002510396.1| DNA-3-methyladenine glycosylase, putative [Ricinus communis] gi|223551097|gb|EEF52583.1| DNA-3-methyladenine glycosylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224066215|ref|XP_002302029.1| predicted protein [Populus trichocarpa] gi|222843755|gb|EEE81302.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
TAIR|locus:2016457382 AT1G19480 [Arabidopsis thalian 0.792 0.589 0.632 3.2e-79
TAIR|locus:2025127394 AT1G75230 [Arabidopsis thalian 0.911 0.657 0.569 3.9e-76
TAIR|locus:2077947273 AT3G50880 [Arabidopsis thalian 0.848 0.882 0.598 7.3e-75
ASPGD|ASPL0000073519391 AN4389 [Emericella nidulans (t 0.450 0.327 0.395 1.8e-32
POMBASE|SPAPB24D3.04c228 mag1 "DNA-3-methyladenine glyc 0.676 0.842 0.311 2.2e-25
UNIPROTKB|Q0BWS7213 HNE_3393 "Putative DNA-3-methy 0.707 0.943 0.305 2.7e-20
POMBASE|SPBC23G7.11213 mag2 "DNA-3-methyladenine glyc 0.693 0.924 0.251 5.1e-19
CGD|CAL0000388354 orf19.3639 [Candida albicans ( 0.482 0.387 0.348 7.8e-18
UNIPROTKB|Q59Y10354 MAG1 "Putative uncharacterized 0.482 0.387 0.348 7.8e-18
SGD|S000000944296 MAG1 "3-methyl-adenine DNA gly 0.665 0.638 0.308 8e-18
TAIR|locus:2016457 AT1G19480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 752 (269.8 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
 Identities = 143/226 (63%), Positives = 182/226 (80%)

Query:    57 PKI-FKPLTFKGEVDIALRHLRDKDPLLATLIDAHRPPTFESSRSPFLSLAKSILYQQLA 115
             P+I  +PLT +GE++ A+ +LR+ DPLLA LID H PPTFES ++PFL+L ++ILYQQLA
Sbjct:   126 PRIQARPLTCEGELETAIHYLRNADPLLAALIDVHPPPTFESFKTPFLALIRNILYQQLA 185

Query:   116 YKAAKSIYTRFVALFNGEDNILPDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILS 175
              KA  SIYTRFV+L  GE+ ++P+ VL+++PQQLR+IGVS RKASYL DLA KY +GILS
Sbjct:   186 MKAGNSIYTRFVSLCGGENLVVPETVLSLNPQQLRQIGVSGRKASYLHDLARKYQNGILS 245

Query:   176 DESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKE 235
             D +I+ MD+ ++F MLT V GIG+WSVHMFMI SLH+PDVLPV DLGVRKG+Q+LYGL +
Sbjct:   246 DSAILNMDEKSLFTMLTMVNGIGSWSVHMFMINSLHRPDVLPVNDLGVRKGVQLLYGLDD 305

Query:   236 LPGALKMEEVCEKWKPYRSVGSWYMWRLMEAKGVLPNVAKAAVTSV 281
             LP   +ME+ C KW+PYRSVGSWYMWRL+EAK    + A AA  S+
Sbjct:   306 LPRPSQMEQHCAKWRPYRSVGSWYMWRLIEAKSTSTSAAVAAGVSL 351
GO:0003824 "catalytic activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006281 "DNA repair" evidence=IEA
GO:0006284 "base-excision repair" evidence=IEA;ISS
TAIR|locus:2025127 AT1G75230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077947 AT3G50880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000073519 AN4389 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPAPB24D3.04c mag1 "DNA-3-methyladenine glycosylase Mag1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q0BWS7 HNE_3393 "Putative DNA-3-methyladenine glycosylase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
POMBASE|SPBC23G7.11 mag2 "DNA-3-methyladenine glycosidase Mag2" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
CGD|CAL0000388 orf19.3639 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59Y10 MAG1 "Putative uncharacterized protein MAG1" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
SGD|S000000944 MAG1 "3-methyl-adenine DNA glycosylase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2.21LOW CONFIDENCE prediction!
3rd Layer3.2.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0003029501
hypothetical protein (382 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
COG0122285 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-o 5e-53
pfam00730144 pfam00730, HhH-GPD, HhH-GPD superfamily base excis 3e-33
cd00056158 cd00056, ENDO3c, endonuclease III; includes endonu 2e-29
smart00478149 smart00478, ENDO3c, endonuclease III 1e-15
PRK10308283 PRK10308, PRK10308, 3-methyl-adenine DNA glycosyla 0.003
TIGR00588310 TIGR00588, ogg, 8-oxoguanine DNA-glycosylase (ogg) 0.004
>gnl|CDD|223200 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  173 bits (441), Expect = 5e-53
 Identities = 76/210 (36%), Positives = 111/210 (52%), Gaps = 13/210 (6%)

Query: 72  ALRHLRDKDPLLATLIDAHRPPTFESSR--------SPFLSLAKSILYQQLAYKAAKSIY 123
           ALR L D DP LA +IDA  P     +          PF +L ++IL QQ++  AA  I+
Sbjct: 68  ALRRLFDLDPDLAPIIDALGPLPLLRAPGLRLPLAPDPFEALVRAILSQQVSVAAAAKIW 127

Query: 124 TRFVALFNGEDNIL-----PDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDES 178
            R V+L+     I      P+ + A   + LR  G+S RKA Y+  LA    +G L    
Sbjct: 128 ARLVSLYGNALEIYHSFPTPEQLAAADEEALRRCGLSGRKAEYIISLARAAAEGELDLSE 187

Query: 179 IVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPG 238
           +  + D    + LT++KGIG W+  MF++F L +PDV P  DLG+R+ ++ LY L   P 
Sbjct: 188 LKPLSDEEAIEELTALKGIGPWTAEMFLLFGLGRPDVFPADDLGLRRAIKKLYRLPTRPT 247

Query: 239 ALKMEEVCEKWKPYRSVGSWYMWRLMEAKG 268
             ++ E+ E+W PYRS  + Y+WR   A  
Sbjct: 248 EKEVRELAERWGPYRSYAALYLWRYARATT 277

Length = 285
>gnl|CDD|216088 pfam00730, HhH-GPD, HhH-GPD superfamily base excision DNA repair protein Back     alignment and domain information
>gnl|CDD|238013 cd00056, ENDO3c, endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>gnl|CDD|214684 smart00478, ENDO3c, endonuclease III Back     alignment and domain information
>gnl|CDD|236671 PRK10308, PRK10308, 3-methyl-adenine DNA glycosylase II; Provisional Back     alignment and domain information
>gnl|CDD|211589 TIGR00588, ogg, 8-oxoguanine DNA-glycosylase (ogg) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 284
KOG1918254 consensus 3-methyladenine DNA glycosidase [Replica 100.0
COG0122285 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine 100.0
PRK10308283 3-methyl-adenine DNA glycosylase II; Provisional 100.0
TIGR00588310 ogg 8-oxoguanine DNA-glycosylase (ogg). All protei 100.0
cd00056158 ENDO3c endonuclease III; includes endonuclease III 100.0
KOG2875323 consensus 8-oxoguanine DNA glycosylase [Replicatio 99.97
TIGR01083191 nth endonuclease III. This equivalog model identif 99.97
COG0177211 Nth Predicted EndoIII-related endonuclease [DNA re 99.96
PRK13913218 3-methyladenine DNA glycosylase; Provisional 99.96
smart00478149 ENDO3c endonuclease III. includes endonuclease III 99.96
PRK10702211 endonuclease III; Provisional 99.95
TIGR01084275 mutY A/G-specific adenine glycosylase. This equiva 99.94
PRK10880 350 adenine DNA glycosylase; Provisional 99.91
PRK01229208 N-glycosylase/DNA lyase; Provisional 99.88
COG2231215 Uncharacterized protein related to Endonuclease II 99.84
PRK13910 289 DNA glycosylase MutY; Provisional 99.84
KOG1921286 consensus Endonuclease III [Replication, recombina 99.82
PF00730108 HhH-GPD: HhH-GPD superfamily base excision DNA rep 99.81
TIGR03252177 uncharacterized HhH-GPD family protein. This model 99.79
COG1194 342 MutY A/G-specific DNA glycosylase [DNA replication 99.73
KOG2457 555 consensus A/G-specific adenine DNA glycosylase [Re 98.75
COG1059210 Thermostable 8-oxoguanine DNA glycosylase [DNA rep 98.45
PF0063330 HHH: Helix-hairpin-helix motif; InterPro: IPR00044 97.78
PF07934117 OGG_N: 8-oxoguanine DNA glycosylase, N-terminal do 97.7
smart0027826 HhH1 Helix-hairpin-helix DNA-binding motif class 1 95.41
PRK13901196 ruvA Holliday junction DNA helicase RuvA; Provisio 95.0
PF06029116 AlkA_N: AlkA N-terminal domain; InterPro: IPR01031 94.55
PRK10353187 3-methyl-adenine DNA glycosylase I; Provisional 94.44
PF03352179 Adenine_glyco: Methyladenine glycosylase; InterPro 94.41
PF1452060 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU 94.18
TIGR00624179 tag DNA-3-methyladenine glycosylase I. This family 93.87
PF1282664 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS 93.23
PRK14601183 ruvA Holliday junction DNA helicase RuvA; Provisio 93.11
PRK02515132 psbU photosystem II complex extrinsic protein prec 92.83
PRK14606188 ruvA Holliday junction DNA helicase RuvA; Provisio 92.77
PRK14603197 ruvA Holliday junction DNA helicase RuvA; Provisio 92.21
TIGR00084191 ruvA Holliday junction DNA helicase, RuvA subunit. 92.0
PRK14604195 ruvA Holliday junction DNA helicase RuvA; Provisio 91.87
PRK14605194 ruvA Holliday junction DNA helicase RuvA; Provisio 91.86
PRK14602203 ruvA Holliday junction DNA helicase RuvA; Provisio 91.68
TIGR00615195 recR recombination protein RecR. This family is ba 91.65
PRK00076196 recR recombination protein RecR; Reviewed 91.63
PRK13844200 recombination protein RecR; Provisional 91.54
COG0632201 RuvA Holliday junction resolvasome, DNA-binding su 91.23
TIGR00575652 dnlj DNA ligase, NAD-dependent. The member of this 91.02
smart00483 334 POLXc DNA polymerase X family. includes vertebrate 90.81
PRK14600186 ruvA Holliday junction DNA helicase RuvA; Provisio 90.39
COG0353198 RecR Recombinational DNA repair protein (RecF path 90.25
PRK07956665 ligA NAD-dependent DNA ligase LigA; Validated 90.19
PF1283665 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE 89.94
cd00141 307 NT_POLXc Nucleotidyltransferase (NT) domain of fam 89.54
TIGR01259120 comE comEA protein. This model describes the ComEA 88.87
PF1173193 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd 88.45
PF1452060 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU 87.45
PRK08609 570 hypothetical protein; Provisional 87.33
COG1555149 ComEA DNA uptake protein and related DNA-binding p 87.17
PRK14973936 DNA topoisomerase I; Provisional 86.99
PF0237187 Transposase_20: Transposase IS116/IS110/IS902 fami 86.93
PRK08097562 ligB NAD-dependent DNA ligase LigB; Reviewed 86.33
PRK14350669 ligA NAD-dependent DNA ligase LigA; Provisional 86.04
PRK13482352 DNA integrity scanning protein DisA; Provisional 85.47
TIGR00084191 ruvA Holliday junction DNA helicase, RuvA subunit. 83.41
PRK14351689 ligA NAD-dependent DNA ligase LigA; Provisional 82.63
PF1039152 DNA_pol_lambd_f: Fingers domain of DNA polymerase 82.15
PF1471668 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HU 82.13
PRK00116192 ruvA Holliday junction DNA helicase RuvA; Reviewed 81.78
PRK14605194 ruvA Holliday junction DNA helicase RuvA; Provisio 81.71
PRK00024224 hypothetical protein; Reviewed 81.61
PF0311866 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha cha 81.56
>KOG1918 consensus 3-methyladenine DNA glycosidase [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-48  Score=340.89  Aligned_cols=209  Identities=47%  Similarity=0.829  Sum_probs=198.4

Q ss_pred             CCCCCchhHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCCHHHHHHHHHHhcccCHHHHHHHHHHHHHHhCC-CCCCCHH
Q 039703           61 KPLTFKGEVDIALRHLRDKDPLLATLIDAHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNG-EDNILPD  139 (284)
Q Consensus        61 ~~l~l~~d~~~~~~~l~~~Dp~l~~li~~~~g~r~~~~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~G~-~~~p~Pe  139 (284)
                      ..++.....+.+++||...||.|..++.-+.++++...+.||+.|+++|++||++.++|+.|++||+..||+ ..||+|+
T Consensus        35 ~~~s~~~k~e~al~hl~~kd~~L~~lv~~~~p~~~~~~q~Pf~~LiraIlsQQLs~kAansI~~Rfvsl~~g~~~~~~pe  114 (254)
T KOG1918|consen   35 YILSHEEKAEIALSHLDEKDPSLVKLVGNHEPLTFKETQTPFERLIRAILSQQLSGKAANSIYNRFVSLCGGAEKFPTPE  114 (254)
T ss_pred             cccccHHHHHHHHHhhhhcchHHHHHhcCCCCCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCch
Confidence            347777889999999999999999999999988888889999999999999999999999999999999998 6799999


Q ss_pred             HHhcCCHHHHHhcCCChHHHHHHHHHHHHHHcCC-CChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHhCCCCCcccc
Q 039703          140 AVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGI-LSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPV  218 (284)
Q Consensus       140 ~la~~~~e~Lr~~Gl~~rKA~~I~~lA~~i~~g~-l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~l~r~dvfPv  218 (284)
                      .+..++.++||.||||.||+.||+.+|+++.+|. .+.+.+.+|+.|++++.|+.++|||+||++|+|+|+|+|+||||+
T Consensus       115 ~i~~~~~~~lrkcG~S~rK~~yLh~lA~~~~ng~I~s~~~i~~mseEeL~~~LT~VKGIg~Wtv~MflIfsL~R~DVmp~  194 (254)
T KOG1918|consen  115 FIDPLDCEELRKCGFSKRKASYLHSLAEAYTNGYIPSKSGIEKMSEEELIERLTNVKGIGRWTVEMFLIFSLHRPDVMPA  194 (254)
T ss_pred             hcCcCCHHHHHHhCcchhhHHHHHHHHHHHhcCCCCchHHHhhcCHHHHHHHHHhccCccceeeeeeeeeccCCCcccCc
Confidence            9999999999999999999999999999999994 578888899999999999999999999999999999999999999


Q ss_pred             cChHHHHHHHHHhCCCCCCCHHHHHHHHHhcCChhHHHHHHHHHhhhhcCC
Q 039703          219 GDLGVRKGLQVLYGLKELPGALKMEEVCEKWKPYRSVGSWYMWRLMEAKGV  269 (284)
Q Consensus       219 ~D~~v~r~~~rly~~~~~~~~~~~~~~~e~~~Pyrs~a~~yLw~~~~~~~~  269 (284)
                      +|++|+++++.+||+...+.+.+++++++.|.|||+.++||||+..+.+..
T Consensus       195 dDlgir~g~k~l~gl~~~p~~~evekl~e~~kpyRtvaawYlWki~~~~~~  245 (254)
T KOG1918|consen  195 DDLGIRNGVKKLLGLKPLPLPKEVEKLCEKCKPYRTVAAWYLWKIIKLDIT  245 (254)
T ss_pred             hhhhHHHHHHHHhCCCCCCchHHHHHHhhhccchHHHHHHHHHhhhhhhcc
Confidence            999999999999999999999999999999999999999999999887653

>COG0122 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional Back     alignment and domain information
>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg) Back     alignment and domain information
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair] Back     alignment and domain information
>TIGR01083 nth endonuclease III Back     alignment and domain information
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13913 3-methyladenine DNA glycosylase; Provisional Back     alignment and domain information
>smart00478 ENDO3c endonuclease III Back     alignment and domain information
>PRK10702 endonuclease III; Provisional Back     alignment and domain information
>TIGR01084 mutY A/G-specific adenine glycosylase Back     alignment and domain information
>PRK10880 adenine DNA glycosylase; Provisional Back     alignment and domain information
>PRK01229 N-glycosylase/DNA lyase; Provisional Back     alignment and domain information
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13910 DNA glycosylase MutY; Provisional Back     alignment and domain information
>KOG1921 consensus Endonuclease III [Replication, recombination and repair] Back     alignment and domain information
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4 Back     alignment and domain information
>TIGR03252 uncharacterized HhH-GPD family protein Back     alignment and domain information
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair] Back     alignment and domain information
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ] Back     alignment and domain information
>PF07934 OGG_N: 8-oxoguanine DNA glycosylase, N-terminal domain; InterPro: IPR012904 The presence of 8-oxoguanine residues in DNA can give rise to G-C to T-A transversion mutations Back     alignment and domain information
>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1 Back     alignment and domain information
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PF06029 AlkA_N: AlkA N-terminal domain; InterPro: IPR010316 This domain is found at the N terminus of bacterial AlkA 3 Back     alignment and domain information
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional Back     alignment and domain information
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3 Back     alignment and domain information
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A Back     alignment and domain information
>TIGR00624 tag DNA-3-methyladenine glycosylase I Back     alignment and domain information
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B Back     alignment and domain information
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional Back     alignment and domain information
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit Back     alignment and domain information
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>TIGR00615 recR recombination protein RecR Back     alignment and domain information
>PRK00076 recR recombination protein RecR; Reviewed Back     alignment and domain information
>PRK13844 recombination protein RecR; Provisional Back     alignment and domain information
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00575 dnlj DNA ligase, NAD-dependent Back     alignment and domain information
>smart00483 POLXc DNA polymerase X family Back     alignment and domain information
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated Back     alignment and domain information
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A Back     alignment and domain information
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases Back     alignment and domain information
>TIGR01259 comE comEA protein Back     alignment and domain information
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria [] Back     alignment and domain information
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A Back     alignment and domain information
>PRK08609 hypothetical protein; Provisional Back     alignment and domain information
>COG1555 ComEA DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14973 DNA topoisomerase I; Provisional Back     alignment and domain information
>PF02371 Transposase_20: Transposase IS116/IS110/IS902 family; InterPro: IPR003346 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA Back     alignment and domain information
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed Back     alignment and domain information
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>PRK13482 DNA integrity scanning protein DisA; Provisional Back     alignment and domain information
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit Back     alignment and domain information
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains Back     alignment and domain information
>PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A Back     alignment and domain information
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed Back     alignment and domain information
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK00024 hypothetical protein; Reviewed Back     alignment and domain information
>PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
3s6i_A228 Schizosaccaromyces Pombe 3-Methyladenine Dna Glycos 6e-27
2h56_A233 Crystal Structure Of Dna-3-methyladenine Glycosidas 8e-26
2yg9_A225 Structure Of An Unusual 3-Methyladenine Dna Glycosy 9e-25
2yg8_A225 Structure Of An Unusual 3-Methyladenine Dna Glycosy 4e-24
4hsb_A217 S. Pombe 3-methyladenine Dna Glycosylase-like Prote 2e-19
4b21_A232 Unprecedented Sculpting Of Dna At Abasic Sites By D 3e-19
2jhn_A295 3-Methyladenine Dna-Glycosylase From Archaeoglobus 1e-10
2jhj_A295 3-Methyladenine Dna-Glycosylase From Archaeoglobus 2e-10
3oh6_A289 Alka Undamaged Dna Complex: Interrogation Of A C:g 7e-06
3ogd_A289 Alka Undamaged Dna Complex: Interrogation Of A G:c 8e-06
1mpg_A282 3-Methyladenine Dna Glycosylase Ii From Escherichia 9e-06
3i0w_A290 Crystal Structure Of Clostridium Acetobutylicum 8-O 7e-04
3i0x_A291 Crystal Structure Of Clostridium Acetobutylicum 8-O 7e-04
3f10_A292 Crystal Structure Of Clostridium Acetobutylicum 8-O 7e-04
>pdb|3S6I|A Chain A, Schizosaccaromyces Pombe 3-Methyladenine Dna Glycosylase (Mag1) In Complex With Abasic-Dna. Length = 228 Back     alignment and structure 
Iteration: 1

 Score =  117 bits (294), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 107/199 (53%), Gaps = 7/199 (3%)
Query: 68  EVDIALRHLRDKDPLLATLIDAHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFV 127
           + +I L  L +    L  L+  +RP      + P+  L +++  QQL  KAA +I+ RF 
Sbjct: 17  KAEIHLSGLDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRFK 76
Query: 128 ALFNGEDNILPDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGIL-SDESIVEMDDVT 186
           ++ N      P+ +  +  + +R  G S RK   L+ +AE    G++ + E    + +  
Sbjct: 77  SISNNGQFPTPEEIRDMDFEIMRACGFSARKIDSLKSIAEATISGLIPTKEEAERLSNEE 136
Query: 187 MFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPG---ALKME 243
           + + LT +KGIG W+V M +IFSL++ DV+P  DL +R G + L+ L ++P     LK  
Sbjct: 137 LIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPKIPTKMYVLKHS 196
Query: 244 EVCEKWKPYRSVGSWYMWR 262
           E+C    P+R+  +WY+W+
Sbjct: 197 EIC---APFRTAAAWYLWK 212
>pdb|2H56|A Chain A, Crystal Structure Of Dna-3-methyladenine Glycosidase (10174367) From Bacillus Halodurans At 2.55 A Resolution Length = 233 Back     alignment and structure
>pdb|2YG9|A Chain A, Structure Of An Unusual 3-Methyladenine Dna Glycosylase Ii ( Alka) From Deinococcus Radiodurans Length = 225 Back     alignment and structure
>pdb|2YG8|A Chain A, Structure Of An Unusual 3-Methyladenine Dna Glycosylase Ii ( Alka) From Deinococcus Radiodurans Length = 225 Back     alignment and structure
>pdb|4HSB|A Chain A, S. Pombe 3-methyladenine Dna Glycosylase-like Protein Mag2 Bound To Damaged Dna Length = 217 Back     alignment and structure
>pdb|4B21|A Chain A, Unprecedented Sculpting Of Dna At Abasic Sites By Dna Glycosylase Homolog Mag2 Length = 232 Back     alignment and structure
>pdb|2JHN|A Chain A, 3-Methyladenine Dna-Glycosylase From Archaeoglobus Fulgidus Length = 295 Back     alignment and structure
>pdb|2JHJ|A Chain A, 3-Methyladenine Dna-Glycosylase From Archaeoglobus Fulgidus Length = 295 Back     alignment and structure
>pdb|3OH6|A Chain A, Alka Undamaged Dna Complex: Interrogation Of A C:g Base Pair Length = 289 Back     alignment and structure
>pdb|3OGD|A Chain A, Alka Undamaged Dna Complex: Interrogation Of A G:c Base Pair Length = 289 Back     alignment and structure
>pdb|1MPG|A Chain A, 3-Methyladenine Dna Glycosylase Ii From Escherichia Coli Length = 282 Back     alignment and structure
>pdb|3I0W|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA CONTAINING CYTOSINE Opposite To 8-Oxog Length = 290 Back     alignment and structure
>pdb|3I0X|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA CONTAINING ADENINE Opposite To 8-Oxog Length = 291 Back     alignment and structure
>pdb|3F10|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine Dna Glycosylase In Complex With 8-Oxoguanosine Length = 292 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
2h56_A233 DNA-3-methyladenine glycosidase; 10174367, EC 3.2. 1e-84
3s6i_A228 DNA-3-methyladenine glycosylase 1; DNA glycosylase 2e-81
2yg9_A225 DNA-3-methyladenine glycosidase II, putative; hydr 3e-73
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 1e-61
1mpg_A282 ALKA, 3-methyladenine DNA glycosylase II; DNA repa 7e-56
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 2e-44
2xhi_A360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 4e-28
1pu6_A218 3-methyladenine DNA glycosylase; helix-hairpin-hel 4e-05
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} Length = 233 Back     alignment and structure
 Score =  252 bits (645), Expect = 1e-84
 Identities = 68/194 (35%), Positives = 103/194 (53%), Gaps = 1/194 (0%)

Query: 72  ALRHLRDKDPLLATLIDAHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFN 131
            ++ +  +D  L   I+        +  +PF SL  SI+ QQL+ KAA +IY R   L  
Sbjct: 22  EVKTIVAQDSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLV- 80

Query: 132 GEDNILPDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKML 191
           G     P+ +  VS + LR+ GVS RK  Y+R + E    G L    +   +  T+ + L
Sbjct: 81  GGALEKPEQLYRVSDEALRQAGVSKRKIEYIRHVCEHVESGRLDFTELEGAEATTVIEKL 140

Query: 192 TSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPGALKMEEVCEKWKP 251
           T++KGIG W+  MFM+FSL + DVL VGD+G+++G + LYG  E  G   +    + W P
Sbjct: 141 TAIKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQRGAKWLYGNGEGDGKKLLIYHGKAWAP 200

Query: 252 YRSVGSWYMWRLME 265
           Y +V   Y+W+   
Sbjct: 201 YETVACLYLWKAAG 214
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe} Length = 228 Back     alignment and structure
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A Length = 225 Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Length = 295 Back     alignment and structure
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A* Length = 282 Back     alignment and structure
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Length = 290 Back     alignment and structure
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Length = 360 Back     alignment and structure
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Length = 218 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
4b21_A232 Probable DNA-3-methyladenine glycosylase 2; hydrol 100.0
3s6i_A228 DNA-3-methyladenine glycosylase 1; DNA glycosylase 100.0
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 100.0
2yg9_A225 DNA-3-methyladenine glycosidase II, putative; hydr 100.0
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 100.0
2h56_A233 DNA-3-methyladenine glycosidase; 10174367, EC 3.2. 100.0
2xhi_A360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 100.0
1mpg_A282 ALKA, 3-methyladenine DNA glycosylase II; DNA repa 100.0
1orn_A226 Endonuclease III; DNA repair, DNA glycosylase, [4F 99.97
2abk_A211 Endonuclease III; DNA-repair, DNA glycosylase; 1.8 99.97
1kea_A221 Possible G-T mismatches repair enzyme; DNA repair, 99.97
1kg2_A225 A/G-specific adenine glycosylase; DNA repair, hydr 99.97
1pu6_A218 3-methyladenine DNA glycosylase; helix-hairpin-hel 99.96
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 99.96
3n0u_A219 Probable N-glycosylase/DNA lyase; structural genom 99.95
3fsp_A 369 A/G-specific adenine glycosylase; protein-DNA comp 99.94
3n5n_X287 A/G-specific adenine DNA glycosylase; alpha-helice 99.93
3fhf_A214 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 99.93
4e9f_A161 Methyl-CPG-binding domain protein 4; HHH DNA glyco 99.89
4glx_A586 DNA ligase; inhibitor, ligase-ligase inhibitor-DNA 93.34
2fmp_A 335 DNA polymerase beta; nucleotidyl transferase, tran 92.8
1s5l_U134 Photosystem II 12 kDa extrinsic protein; photosynt 92.7
3vdp_A212 Recombination protein RECR; zinc finger, DNA repai 92.68
1vdd_A 228 Recombination protein RECR; helix-hairpin-helix, z 92.09
2bcq_A 335 DNA polymerase lambda; misalignment, extrahelical, 91.57
2ihm_A 360 POL MU, DNA polymerase MU; helix-turn-helix, trans 91.19
2ztd_A212 Holliday junction ATP-dependent DNA helicase RUVA; 90.96
4gfj_A685 Topoisomerase V; helix-hairpin-helix, DNA repair e 90.94
3arc_U97 Photosystem II 12 kDa extrinsic protein; PSII, mem 90.8
1dgs_A667 DNA ligase; AMP complex, NAD+-dependent; HET: DNA 89.74
2ofk_A183 3-methyladenine DNA glycosylase I, constitutive; D 89.35
2jg6_A186 DNA-3-methyladenine glycosidase; 3-methyladenine-D 88.82
1ixr_A191 Holliday junction DNA helicase RUVA; heterooligome 88.46
1jms_A 381 Terminal deoxynucleotidyltransferase; polymerase; 88.41
3c1y_A377 DNA integrity scanning protein DISA; DNA damage, D 87.3
1cuk_A203 RUVA protein; DNA repair, SOS response, DNA-bindin 87.05
2owo_A671 DNA ligase; protein-DNA complex, ligase-DNA comple 86.87
2edu_A98 Kinesin-like protein KIF22; kinesin-like DNA bindi 86.84
3b0x_A 575 DNA polymerase beta family (X family); structural 85.25
1x2i_A75 HEF helicase/nuclease; alpha helix, helix-hairpin- 85.11
2w9m_A 578 Polymerase X; SAXS, DNA repair, DNA polymerase, DN 84.6
2duy_A75 Competence protein comea-related protein; helix-ha 83.43
2duy_A75 Competence protein comea-related protein; helix-ha 83.22
1z00_A89 DNA excision repair protein ERCC-1; helix-hairpin- 82.96
2ztd_A212 Holliday junction ATP-dependent DNA helicase RUVA; 82.08
1x2i_A75 HEF helicase/nuclease; alpha helix, helix-hairpin- 80.67
2a1j_A63 DNA repair endonuclease XPF; XPF, xeroderma pigmen 80.6
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A* Back     alignment and structure
Probab=100.00  E-value=1.2e-52  Score=377.44  Aligned_cols=207  Identities=24%  Similarity=0.492  Sum_probs=194.9

Q ss_pred             CCCCCchhHHHHHHHHHhcCchHHHHHHHcCCCCCC--CCCCHHHHHHHHHHhcccCHHHHHHHHHHHHHHhCCCC-CCC
Q 039703           61 KPLTFKGEVDIALRHLRDKDPLLATLIDAHRPPTFE--SSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGED-NIL  137 (284)
Q Consensus        61 ~~l~l~~d~~~~~~~l~~~Dp~l~~li~~~~g~r~~--~~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~G~~~-~p~  137 (284)
                      .+|++|.|+++++++|...||.|+.+++++||+|++  ...||||+||++||+||++++++.++++||+++||+.. ||+
T Consensus        18 ~~ldld~d~~~~~~~L~~~Dp~l~~li~~~~g~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPt   97 (232)
T 4b21_A           18 SHMSKDSDYKRAEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPT   97 (232)
T ss_dssp             ---CHHHHHHHHHHHHTTTCHHHHHHHHHHCSCCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCC
T ss_pred             CcCCCccCHHHHHHHHHhhCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCC
Confidence            469999999999999988899999999999998875  35699999999999999999999999999999999754 899


Q ss_pred             HHHHhcCCHHHHHhcCCChHHHHHHHHHHHHHHcCCC-ChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHhCCCCCcc
Q 039703          138 PDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGIL-SDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVL  216 (284)
Q Consensus       138 Pe~la~~~~e~Lr~~Gl~~rKA~~I~~lA~~i~~g~l-~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~l~r~dvf  216 (284)
                      |++|+++++++|++|||+++|++||+++|+.+.+|.+ +++.|.++++++++++|++|||||+|||+|||+|+|+++|+|
T Consensus        98 pe~la~~~~e~Lr~~Gl~~~Ka~~l~~~A~~~~~g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~f  177 (232)
T 4b21_A           98 PKQIMETDVETLHECGFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIM  177 (232)
T ss_dssp             HHHHHTSCHHHHHTTTCCHHHHHHHHHHHHHHHTTCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCC
T ss_pred             HHHHHcCCHHHHHHcCCcHHHHHHHHHHHHHHHhCCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCee
Confidence            9999999999999999999999999999999999999 799999999999999999999999999999999999999999


Q ss_pred             cccChHHHHHHHHHhCCCCCCCHHHHHHHHHhcCChhHHHHHHHHHhhhhc
Q 039703          217 PVGDLGVRKGLQVLYGLKELPGALKMEEVCEKWKPYRSVGSWYMWRLMEAK  267 (284)
Q Consensus       217 Pv~D~~v~r~~~rly~~~~~~~~~~~~~~~e~~~Pyrs~a~~yLw~~~~~~  267 (284)
                      |++|+||+|+++++|+.+..+++++++++.+.|+||||||++|||++++..
T Consensus       178 pv~D~~v~r~~~rl~~~~~~~~~~~~~~~~e~w~P~rs~A~~yLw~~~~~~  228 (232)
T 4b21_A          178 PADDSTLKNEAKEFFGLSSKPQTEEVEKLTKPCKPYRTIAAWYLWQIPKLH  228 (232)
T ss_dssp             CTTCHHHHHHHHHHTTCSSCCCHHHHHHHTGGGTTCHHHHHHHHHTGGGC-
T ss_pred             eCccHHHHHHHHHHhCCCCCCCHHHHHHHHHHccCHHHHHHHHHHHcCccc
Confidence            999999999999999998888999999999999999999999999988753
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe} Back     alignment and structure
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Back     alignment and structure
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Back     alignment and structure
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} Back     alignment and structure
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Back     alignment and structure
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A* Back     alignment and structure
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Back     alignment and structure
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Back     alignment and structure
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2 Back     alignment and structure
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A Back     alignment and structure
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Back     alignment and structure
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Back     alignment and structure
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} Back     alignment and structure
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* Back     alignment and structure
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens} Back     alignment and structure
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A* Back     alignment and structure
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A Back     alignment and structure
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli} Back     alignment and structure
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... Back     alignment and structure
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus} Back     alignment and structure
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D Back     alignment and structure
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A Back     alignment and structure
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... Back     alignment and structure
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} Back     alignment and structure
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A Back     alignment and structure
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19} Back     alignment and structure
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U* Back     alignment and structure
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A* Back     alignment and structure
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A* Back     alignment and structure
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A Back     alignment and structure
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2 Back     alignment and structure
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A* Back     alignment and structure
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A* Back     alignment and structure
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A Back     alignment and structure
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli} Back     alignment and structure
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7 Back     alignment and structure
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A* Back     alignment and structure
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5 Back     alignment and structure
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans} Back     alignment and structure
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7 Back     alignment and structure
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7 Back     alignment and structure
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 Back     alignment and structure
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A Back     alignment and structure
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5 Back     alignment and structure
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 284
d1mpga1183 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosyla 2e-36
d2noha1190 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Hum 2e-21
d1pu6a_217 a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III 1e-11
d1ngna_144 a.96.1.2 (A:) Mismatch-specific thymine glycosylas 8e-06
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Length = 183 Back     information, alignment and structure

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: DNA repair glycosylase, 2 C-terminal domains
domain: 3-Methyladenine DNA glycosylase II (gene alkA or aidA)
species: Escherichia coli [TaxId: 562]

 Score =  126 bits (317), Expect = 2e-36
 Identities = 38/187 (20%), Positives = 70/187 (37%), Gaps = 20/187 (10%)

Query: 91  RPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILP--------DAVL 142
           R P        F    ++IL Q ++   A  +  R   L+    +  P          + 
Sbjct: 7   RLP---GCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLA 63

Query: 143 AVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSV 202
           A  PQ L+ +G+  ++A  L  LA    +G L      +++     K L +  GIG W+ 
Sbjct: 64  AADPQALKALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQA--MKTLQTFPGIGRWTA 121

Query: 203 HMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPGALKMEEVCEKWKPYRSVGSWYMWR 262
           + F +      DV    D  +++    +          ++    E+WKP+RS    ++W 
Sbjct: 122 NYFALRGWQAKDVFLPDDYLIKQRFPGMT-------PAQIRRYAERWKPWRSYALLHIWY 174

Query: 263 LMEAKGV 269
               +  
Sbjct: 175 TEGWQPD 181
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Length = 190 Back     information, alignment and structure
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Length = 217 Back     information, alignment and structure
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 144 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
d1mpga1183 3-Methyladenine DNA glycosylase II (gene alkA or a 100.0
d2noha1190 8-oxoguanine glycosylase {Human (Homo sapiens) [Ta 100.0
d1pu6a_217 3-Methyladenine DNA glycosylase III (MagIII) {Heli 99.97
d2abka_211 Endonuclease III {Escherichia coli [TaxId: 562]} 99.93
d1orna_214 Endonuclease III {Escherichia coli [TaxId: 562]} 99.93
d1keaa_217 Thymine-DNA glycosylase {Archaeon Methanobacterium 99.92
d1kg2a_224 Catalytic domain of MutY {Escherichia coli [TaxId: 99.91
d1ngna_144 Mismatch-specific thymine glycosylase domain of th 99.9
d1rrqa1221 Catalytic domain of MutY {Bacillus stearothermophi 99.9
d1ixra173 DNA helicase RuvA subunit, middle domain {Thermus 95.98
d1cuka278 DNA helicase RuvA subunit, middle domain {Escheric 95.96
d1bvsa271 DNA helicase RuvA subunit, middle domain {Mycobact 95.73
d2noha2124 8-oxoguanine glycosylase {Human (Homo sapiens) [Ta 94.76
d2i1qa160 DNA repair protein Rad51, N-terminal domain {Archa 94.32
d1dgsa1181 NAD+-dependent DNA ligase, domain 3 {Thermus filif 93.81
d1nkua_187 3-Methyladenine DNA glycosylase I (Tag) {Escherich 93.64
d1vdda_199 Recombination protein RecR {Deinococcus radioduran 92.46
d1pzna161 DNA repair protein Rad51, N-terminal domain {Archa 91.78
d1bvsa271 DNA helicase RuvA subunit, middle domain {Mycobact 90.77
d3bzka190 Transcriptional accessory factor Tex {Pseudomonas 90.72
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 90.47
d2axtu198 Photosystem II 12 kDa extrinsic protein PsbU {Ther 90.36
d2edua191 KIF22, C-terminal domain {Human (Homo sapiens) [Ta 90.24
d2bgwa170 DNA repair endonuclease XPF {Aeropyrum pernix [Tax 89.84
d1ixra173 DNA helicase RuvA subunit, middle domain {Thermus 89.71
d1cuka278 DNA helicase RuvA subunit, middle domain {Escheric 89.54
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 89.5
d1szpa164 DNA repair protein Rad51, N-terminal domain {Baker 89.49
d2a1jb178 DNA excision repair protein ERCC-1 {Human (Homo sa 89.38
d1x2ia168 ATP-dependent RNA helicase PF2015 {Pyrococcus furi 89.33
d2i1qa160 DNA repair protein Rad51, N-terminal domain {Archa 89.0
d1szpa164 DNA repair protein Rad51, N-terminal domain {Baker 88.31
d1pzna161 DNA repair protein Rad51, N-terminal domain {Archa 87.85
d1x2ia168 ATP-dependent RNA helicase PF2015 {Pyrococcus furi 87.81
d2a1ja162 DNA repair endonuclease XPF {Human (Homo sapiens) 87.3
d1y88a159 Hypothetical protein AF1548, C-terminal domain {Ar 86.89
d2fmpa257 DNA polymerase beta {Human (Homo sapiens) [TaxId: 86.77
d1jmsa360 Terminal deoxynucleotidyl transferase {Mouse (Mus 86.72
d2bcqa257 DNA polymerase lambda {Human (Homo sapiens) [TaxId 86.47
d2bgwa170 DNA repair endonuclease XPF {Aeropyrum pernix [Tax 85.64
d1b22a_70 DNA repair protein Rad51, N-terminal domain {Human 85.2
d2a1ja162 DNA repair endonuclease XPF {Human (Homo sapiens) 82.11
d2duya165 Uncharacterized protein TTHA1967 {Thermus thermoph 81.08
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: DNA repair glycosylase, 2 C-terminal domains
domain: 3-Methyladenine DNA glycosylase II (gene alkA or aidA)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.8e-46  Score=320.15  Aligned_cols=170  Identities=22%  Similarity=0.364  Sum_probs=157.7

Q ss_pred             HcCCCCCCCCCCHHHHHHHHHHhcccCHHHHHHHHHHHHHHhCCC--------CCCCHHHHhcCCHHHHHhcCCChHHHH
Q 039703           89 AHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGE--------DNILPDAVLAVSPQQLREIGVSYRKAS  160 (284)
Q Consensus        89 ~~~g~r~~~~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~G~~--------~~p~Pe~la~~~~e~Lr~~Gl~~rKA~  160 (284)
                      ..||+|+++..||||+||++||+||+|+++|.++++||++.||+.        .||+|++|+.+++++|++||++++|++
T Consensus         2 ~~pGlRi~~~~dpfe~Lv~~Ii~Qqis~~aA~~i~~rl~~~~g~~~~~~~~~~~FPtp~~l~~~~~~~lr~~Gls~~Ka~   81 (183)
T d1mpga1           2 ARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKALGMPLKRAE   81 (183)
T ss_dssp             TCTTCCCCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHHHHTTSCHHHHH
T ss_pred             cCCCCcCCCCCCHHHHHHHHHHhchhhHHHHHHHHHHHHHHhCccccccccccCCCcHHHHHcCCHHHHHHcCCcHHHHH
Confidence            468999998899999999999999999999999999999999975        389999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHhCCCCCcccccChHHHHHHHHHhCCCCCCCHH
Q 039703          161 YLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPGAL  240 (284)
Q Consensus       161 ~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~l~r~dvfPv~D~~v~r~~~rly~~~~~~~~~  240 (284)
                      ||+.+|+.+.+|.+++.  ..++.+|+++.|++|||||+|||+|||||+||++|+||++|++|+++++.+       +++
T Consensus        82 ~i~~~a~~~~~g~l~~~--~~~~~~e~~~~L~~l~GIGpwTAd~illf~lg~~dvfP~~D~~lr~~~~~l-------~~~  152 (183)
T d1mpga1          82 ALIHLANAALEGTLPMT--IPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFPGM-------TPA  152 (183)
T ss_dssp             HHHHHHHHHHHTCSCSS--CCSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCCTTCHHHHHHSTTC-------CHH
T ss_pred             HHHHHHHHHHcCchhhh--ccccHHHHHHHHHHhhcccHHHHHHHHHhhCCCCCccccchHHHHHHhhhC-------CHH
Confidence            99999999999998765  358899999999999999999999999999999999999999999876433       678


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhhhhc
Q 039703          241 KMEEVCEKWKPYRSVGSWYMWRLMEAK  267 (284)
Q Consensus       241 ~~~~~~e~~~Pyrs~a~~yLw~~~~~~  267 (284)
                      +++++.+.|+||+||+++|||+.++..
T Consensus       153 ~~~~~~~~~~Pyrs~a~~yLW~~~~~~  179 (183)
T d1mpga1         153 QIRRYAERWKPWRSYALLHIWYTEGWQ  179 (183)
T ss_dssp             HHHHHHGGGTTCHHHHHHHHHTCTTCC
T ss_pred             HHHHHHHhccCHHHHHHHHHHHhCCCC
Confidence            999999999999999999999976654
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Back     information, alignment and structure
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure
>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]} Back     information, alignment and structure
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]} Back     information, alignment and structure
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y88a1 a.60.4.3 (A:128-186) Hypothetical protein AF1548, C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure